ID   CR1-4_DR    repbase;    DNA;    ZEB; 1902 BP.
XX
AC   .
XX
DT   05-JUN-2002 (Rel. 7.05, Created)
DT   05-JUN-2002 (Rel. 7.05, Last updated, Version 1)
XX
DE   CR1-4_DR is a CR1-like non-LTR retrotransposon - a consensus.
XX
KW   CR1 clad; CR1-4_DR; ORF2; Non-LTR retrotransposon;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-1902
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-4_DR, a family of CR1-like non-LTR retrotransposons in
RT   zebrafish.";
RL   Repbase Reports 2(5), 6-6 (2002).
XX
CC   [1] (Consensus)
XX
CC   CR1-4_DR is a family of CR1-like non-LTR retrotransposons and it
CC   was active in zebrafish recently. CR1-4_DR copies are ~5%
CC   divergent
CC   from the consensus sequence. There are ~100 copies
CC   of CR1-4_DR present in the zebrafish genome.
CC   The 5' portion is incomplete; the consensus was built from
CC   five copies.
CC   The consensus encodes CR1-4_DRp, a 566-aa portion of the reverse
CC   transcriptase.
CC   CR1-4_DRp (positions 2-1696):
CC   XLCNSFLTFFETKIKNIHHQLHSNSSAPDFSQHVSEIITHFSFDTFTLPSTAEIVGHIRKSKTTNCLLDP
CC   LPTCLVKTCLPSLSTLITNIIHKSLDSGSVPSLFKTAVITPVLKNLELIHPIWPTTDQFPNLPFVSKILE
CC   KCVASQIHNYLSINNLFELFQSGFRPNHSTETALVRITNDLLLAADSGLLSILILLDLSAAFDMVLHEVL
CC   LNRLASLGISGTLLLWFKSYLEDRTQYVQIKDFKSRSQIVTTGVPQGSVLGPLLFIIYLLPLGHIFRKYN
CC   IQFHCYADNTQLYLSTKPSCSFPPSALSRCLAEIKIWLSANFLKLNSDKTEALLIGTKSVLDKADNFTID
CC   IDNSTIFPSVQVKSLGVILDSTLSFEGHINNITRTAYFHVRNITRLRPSLTTNNTAIFIHALVTSRLDYC
CC   NALLSGLPSKLLRQKLQLVQNHAARVISRTPSHEHVTPLLYQLHWLPVKYRIDFKILLLTFKALHNLAPQ
CC   YLTELLHIYTPSRTLRSANNFTLVPPRTRLSTMGDRSFSSMAPRLWNSLPLDLRSSDSLHTFKSRLKTHL
CC   FKQAFL
CC   There is only a ~60% identity between CR1-4_DR and other CR1-like
CC   elements from zebrafish.
XX
SQ   Sequence 1902 BP; 509 A; 461 C; 277 G; 655 T; 0 other;
     gttgtgtaac agcttcctga ctttttttga aacaaaaatt aagaacattc atcatcaatt        60
     acattcaaat agttcagccc ctgacttcag ccaacatgtt tctgaaatca ttacacattt       120
     ctcttttgat acttttacct taccatctac cgctgaaata gttggtcata tacggaaatc       180
     caaaaccacc aactgcctgc ttgatcctct tcctacatgc ttagttaaga cctgtcttcc       240
     atcattgtcc acactgatta ctaacattat tcacaaatca ctggattctg gatctgtccc       300
     atctttattt aaaactgctg taatcacccc agtactaaaa aacctggagc tgattcatcc       360
     aatttggcca actacagacc aatttccaaa tttgccattt gtctcaaaaa tacttgaaaa       420
     atgtgttgcg tctcaaatcc ataactatct ctctattaac aatttgtttg agctcttcca       480
     gtctggtttt cgtcccaacc acagcactga gactgctctt gtcaggatta ctaatgatct       540
     actactggca gcagactctg gtttactgtc aattcttatt ctcctggact tgagtgcagc       600
     ttttgacatg gttttgcacg aggttctttt gaataggctt gcctcactag ggatctctgg       660
     cacccttctt ttatggttta agtcatatct cgaagatcgt actcagtatg ttcaaattaa       720
     agattttaag tcaagatcgc agattgtcac tactggtgtc ccacagggtt ctgtactggg       780
     tccactcctg tttatcatat atctactgcc tcttggtcac attttcagaa aatacaacat       840
     acaatttcac tgttatgctg acaacactca actctacctg tccaccaagc cctcctgttc       900
     ttttcctcct tctgctttaa gcagatgttt agctgaaata aaaatctggc tttcagctaa       960
     ctttttaaaa ttaaacagcg acaaaactga agcccttctc atcggcacta aaagtgtttt      1020
     ggataaagct gataatttca caatagacat tgataacagc acaatttttc cctctgtgca      1080
     ggtaaagagt ttgggtgtca tcttggatag cacactctca tttgaaggtc acattaataa      1140
     tattacacgt actgcatatt tccacgtgcg taatatcact cgtctccgcc cttctctcac      1200
     aactaataac acagccattt ttatccacgc attagttact tcacgtcttg actactgtaa      1260
     tgcacttctt tctggacttc cttccaaact tctccgtcaa aaactccaac tggttcagaa      1320
     ccatgcagct cgtgtcatct ctaggacccc atctcacgag cacgtcacac cactcctcta      1380
     tcagcttcac tggcttccag taaagtatcg tattgatttt aaaatattac ttctaacttt      1440
     caaggcactt cataatctcg ctcctcaata tctcaccgaa cttctccata tttacacccc      1500
     ttctcgtacc cttagatcag ccaacaactt caccctggta ccacctcgca ctcgattgag      1560
     cacaatggga gacagatcct ttagctctat ggctcctcgg ctatggaact cgcttcccct      1620
     agatctaagg agcagtgata gtcttcacac ttttaaatcc cgtctaaaga cccatctttt      1680
     taagcaggct tttctttaac aatttttttt gtcatgtttt ttattatgtt cttttatatt      1740
     cgctattgcg ttttaacctg tttggtcaat gattgttttt agtaatgttt aatttgtttt      1800
     agcatgtctg ttgatgctta ttgtaaggcg accttgggtg tcttgaaagg cgccatttac      1860
     aaataaaatg aattattatt attattatta ttattattat ta                         1902
//
ID   Gypsy-21-I_DR repbase;    DNA;    ZEB; 6426 BP.
XX
AC   .
XX
DT   11-FEB-2005 (Rel. 10.01, Created)
DT   11-FEB-2005 (Rel. 10.01, Last updated, Version 1)
XX
DE   An internal portion of the Gypsy-21_DR LTR retrotransposon - a
DE   consensus sequence.
XX
KW   GYPSY superfamily; Gypsy-21-I_DR; Gypsy-21-LTR_DR; Gypsy-21_DR;
KW   LTR retrotransposon; endogenous retrovirus; gag; integrase;
KW   protease; reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-6426
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-21_DR, a family of LTR retrotransposons from zebrafish.";
RL   Repbase Reports 5(1), 15-15 (2005).
XX
CC   [1] (Consensus)
XX
CC   Gypsy-21-I_DR is an internal portion of the Gypsy-21_DR
CC   LTR retrotransposon that belongs to the Gypsy superfamily.
CC   Its long terminal repeat is deposited in Repbase
CC   as Gypsy-21-LTR_DR. The consensus sequence was reconstructed
CC   based on multiple alignment of five proviral copies (they are
CC   less than 1% divergent from the consensus sequence).
CC   Gypsy-21_DR retrotransposons are characterized by 4-bp
CC   target site duplications. The internal portion contains two
CC   ORFs encoding the 562-aa Gypsy-21_DR1p gag (pos. 86-1771)
CC   and 1585-aa Gypsy-21_DR2p pol proteins (pos. 1672-6426)
CC   composed of the protease, reverse transcriptase, and integrase
CC   domains. The second protein, including the protease domain,
CC   does not start from Met. Presumably, the gag-pol fusion protein
CC   is formed originally due to a ribosomal frame shift.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy-21_DR1p"
FT                 /translation="MEIIEQENIKVPNSLIVSGTTDTESDIDLTEHLGKYG
FT                 CINRIVRIDSPGSPHHKNVIVEYESGSAVKILEPQLPFIFENPHQADIQYE
FT                 IKALSSIYVETVTTSATKGYMEKLKSIAKLSGRRFEDLLQEELSKCREPVA
FT                 QADDDTTDVASDLRSGIPQVNPAQGSQEMPMGAAFVPLVGTNVPNVNPPEI
FT                 QRVVVEHIVKSEEATSHMHAPLKLRFFSGRSPRPANEVDYEIWHNSVELML
FT                 QDPAVSDLVRSRKIIDSLLPPASDIVRTLGLHATPRAYLDLLDSAFGTVED
FT                 GDELFAKFLSTMQNAGEKPSQFLQRLQVALAQAIRRGGVPSSEADRHLVRQ
FT                 FCRGCWDDALISELQLEQKKANPPSFSELLLLLRTAEDKISTKELRMRKHL
FT                 GASKLRTSSYSVCASSDEVVSTQTIVSDLKKQIAELQNQVEGLTKAKKQAQ
FT                 CAPEGRVCDLQKQVVGLKGQIVEAKPSKSAKTQSATRMNKTQSVQTNLSEV
FT                 VSSVPLKQLSKPKPWYCFHCGEDSHIASTCDRDANPALVAAKRKLLKERQS
FT                 SWEAQMGSSHRTPLK"
FT   CDS           0..0
FT                 /product="Gypsy-21_DR2p"
FT                 /translation="CKSCLGSCQKKAFKRAAVVLGGTNGVIPSHSFKIESA
FT                 PVVGQTGAEKCSRRPKNSKFCNHHASSRSKPFILPKGLVGAKCTAEVSIAG
FT                 QKCSVLFDTGSQVTTVSQTYYEQNLSHLEIKPLEHLEVEAANGQFVPYLGY
FT                 VEIDVVFPKEFLGAEITLTTLALVTADTSSNVQSPVLIGTNTLDLAYEAQF
FT                 DSEVAQPSHVLPYGFKVVMNVLRHRFKLKTNSMIGLVRAQGTKPEVVPAGQ
FT                 TLVLEGSINSRELSSDKWVLMEAPLQSSLPGGLLCASSLVTLSQRSFQKIP
FT                 VILKNETEHDILVPAKSVIAELYSLQSVNVKEPATESNSQGKELPPYTLDF
FT                 GDSPIPNEWKERISQKLCAMSDVFALHDLDFGKTDKVTHRIRLHDQTPFKQ
FT                 RARPIHPQDFDAVRKHLQELLDAGVIRESESPFSSPIVVVRKKNGDVRLCV
FT                 DYRKLNLQTIKDAYALPNLEETFSALTGSRWFSVLDLKSGYYQIEVEESDK
FT                 HKTAFVCPLGFWEFNRMPQGVTNAPSTFQRLMERCMSDVHLKEVVVFLDDL
FT                 IVFSDTLEEHERRLLRVLHRLREFGLKLSLEKCRFFQTSVKYLGHIVSSSG
FT                 VETDPDKVAALKTWPVPKNLKELRSFLGFSGYYRRFIRDYAAIVKPLNDLT
FT                 SGYPPHRKSSKVRERRDYHNPKEPFGSRWSANCQKAFEAIIEALTTAPVLG
FT                 FADPKLPYVLHTDASTVGLGAALYQEQEGQLKVIAYASRGLSRSEARYPAH
FT                 KLEFLALKWAVTEKFYDYLYGNQFTVVTDSNPLTYVLTSAKLDSTSYRWLS
FT                 ALSAFSFKLQYRAGKQNIDADSLSRLPHGALKNDVASQKEQERIRQFALNH
FT                 LFDDVQTMSPEVIQAICDKHIVYCKSVDCGVTPMTLVESLAIHVDAIPGSF
FT                 DHDENNFGCPVVPTFGENDLKEKQRSDPIIREVIVQLETGETIPPLVRKEL
FT                 PMLSLLMRELSKLELQNGILYRRRHDGDTITYQLVLPESLRSMVLTCLHDD
FT                 MGHLGVDRTLDLVRSRFYWPKMLVDIERKIRTCPRCVCRKSLPDHAAPLVN
FT                 IQVTRPLELVCMDFLSIEPDSRNTKDVLVITDFFTKYAVAVPTCNQKSRTV
FT                 AKALWENFIVHYGIPEKLHSDQGADFESKTIKELCELMGIHKIRTTPYHPR
FT                 GNPVERFNRTLLNMLGTLKKCDKVHWSSFVKPLVHAYNCTKHDSTGFSPYE
FT                 LMFGRQPRLPIDLAFDVPLNREEYKTHSQFVHDLKCRLKKTYDLAMKSTAK
FT                 VGERNKARFDKHVVESVLDIGDRVLVKNVHLRGKQKLADKWESLVYVVVKR
FT                 AGDLPVYTVKPEGKEGPLRTLHRDLLLPCDLLQLPEEVLALPSTRKRPPTR
FT                 KNPCNKVQDQVDFDSDDDDSSLELMHSDLLIPTNITFTEVYEAGTGPQTEV
FT                 PSIPIVQDTVGHISTENLPVSADSPIECLPEIENFQIDNAPTLNVLPVDDP
FT                 DVVESDENLPAEVPVNLGDQQIPVEETVKVSEHETETKKHENDGNVIRKSD
FT                 RVRQKPRIFTYPELGNPLVSIVQSLFQSLSTAVTDSIIENNSFTKAADAVV
FT                 TQPVSFMHRDVHRVNGGGA"
XX
SQ   Sequence 6426 BP; 1825 A; 1292 C; 1508 G; 1801 T; 0 other;
     gtttggcgag ccagccagga gcagtaagta gagagtgact atagtaagaa atcagacata        60
     tttaaataga ctttacaacg taaagatgga aatcattgaa caggagaaca ttaaggttcc       120
     aaattctctt attgtaagcg gaactacaga cacagagagt gatattgatc tgaccgagca       180
     tctaggtaaa tatgggtgca taaatagaat tgtccgcatt gacagtcctg ggtcccccca       240
     tcacaaaaat gtgatagttg aatatgagag tggaagtgca gtgaaaatcc tagagcccca       300
     gttaccattc atttttgaaa atccacatca ggctgatatt cagtatgaga tcaaagcttt       360
     gtccagtatt tatgttgaaa ccgtcactac tagtgccacc aagggctata tggaaaagtt       420
     gaaaagcatt gcaaagctta gtggtaggcg ttttgaggac ctcttacaag aagagctttc       480
     taaatgcagg gaacccgtag cacaggctga tgacgatact acagatgttg cctctgattt       540
     gcgctcaggt attcctcaag ttaaccctgc tcaggggagc caggaaatgc ctatgggtgc       600
     tgcatttgtt ccattagttg ggacgaatgt tcctaatgta aatcccccag agatacagcg       660
     tgttgtagtt gagcatattg tgaagagtga agaagctact tctcacatgc atgctcctct       720
     caagctaaga ttcttttctg ggcggtcccc tcgtccagcg aatgaggtag attatgagat       780
     ttggcacaac agtgtagaac tcatgctaca agacccagcc gtgtctgatt tagtcagatc       840
     tagaaaaatt attgacagcc ttctacctcc agcatcagac attgtgagga cgctaggtct       900
     gcatgcaacg cctagagctt atcttgatct tttagattca gctttcggaa cggtggagga       960
     tggtgacgaa ctctttgcta agttcttgag cacaatgcag aatgcaggag agaagccatc      1020
     acagttttta cagcgattgc aagtagctct tgcacaggct attagaagag gtggtgtgcc      1080
     ctctagtgag gctgatcgac acttagtaag acaattctgt aggggttgtt gggacgatgc      1140
     cctcatttca gaattacaac tagaacaaaa gaaggccaat cccccttcct tctcagaatt      1200
     gttattactg ttgcgaacag cagaagacaa aattagcaca aaagagctcc gtatgagaaa      1260
     acatcttggt gcatccaagc tgcgaacatc ctcttactct gtgtgcgctt catcggatga      1320
     ggttgtatcg actcagacta ttgtttcaga tttgaaaaag caaattgcag agcttcagaa      1380
     ccaagttgag ggtttaacga aagctaaaaa gcaagctcag tgtgctccag agggcagggt      1440
     ttgtgacttg caaaagcaag tagtagggtt gaagggtcaa attgttgaag ctaagccaag      1500
     caagtctgca aaaactcaat ctgctactag gatgaacaaa acccagtccg tgcaaacaaa      1560
     cttgagtgaa gttgtaagca gtgtccctct taagcagctg agtaaaccta agccctggta      1620
     ctgctttcac tgcggtgaag acagtcatat tgcttctaca tgtgatcgtg atgcaaatcc      1680
     tgccttggta gctgccaaaa gaaagctttt aaaagagcgg cagtcgtcct gggaggcaca      1740
     aatggggtca tcccatcgca ctcctttaaa atagaatcag ctccagttgt gggacaaacg      1800
     ggggctgaaa aatgtagcag gcgtcccaag aatagtaaat tttgcaatca ccatgctagc      1860
     agtagaagca aaccttttat tttgcctaag ggcttggtag gggcaaaatg cactgctgaa      1920
     gtctctatag cgggtcaaaa gtgtagtgtt ctttttgaca caggttcgca ggtaaccact      1980
     gtttctcaga cctattatga acagaatttg tctcatctag agataaaacc gcttgaacat      2040
     cttgaggtgg aagctgcaaa tggacagttt gttccgtatc tgggctatgt tgagattgat      2100
     gtagtgttcc caaaagaatt ccttggagca gagatcacac ttaccactct tgctttggtc      2160
     actgcagata ctagcagtaa tgtccagtct cctgttctta ttggtacaaa cacccttgac      2220
     ttagcctatg aagcccagtt tgattctgaa gtagcccagc cttcacatgt attaccgtat      2280
     ggattcaaag tcgtcatgaa tgttctcaga caccgattca agctaaaaac caatagcatg      2340
     attggacttg ttcgagccca gggtacaaag cctgaagttg tccctgcagg acaaactctt      2400
     gtgcttgagg gttcaataaa ttccagagag ctttcctctg ataagtgggt tctgatggag      2460
     gctcctcttc agtcttcctt gcctggaggt cttttgtgtg catcttctct tgtcactctt      2520
     tcccagagat catttcagaa aatcccagtg atcctgaaaa atgaaactga gcatgacatt      2580
     ttagttcctg caaagagtgt cattgcagaa ttgtattcac tgcagagtgt gaatgttaaa      2640
     gaacctgcca cagagtccaa cagtcagggt aaagagttac caccgtacac tttggatttt      2700
     ggtgactcac caatacctaa tgagtggaag gagagaattt cacaaaagtt gtgtgcgatg      2760
     tcagatgttt ttgctcttca tgatttagat ttcggcaaga ctgataaagt gacgcatcgc      2820
     ataaggctac atgaccaaac cccatttaaa cagagagctc gccccattca cccgcaagat      2880
     tttgatgctg tgcggaaaca tctgcaggag ttattagatg ccggtgtcat ccgggagtcg      2940
     gagtcccctt tttcttcacc gatcgtagtt gttcggaaga agaatgggga tgtccgtctc      3000
     tgtgttgact accgtaaact taacctgcaa acgatcaaag atgcttacgc tttgccaaat      3060
     ttggaggaaa ctttttccgc tcttactggt tctcgttggt tctctgtttt ggacctcaaa      3120
     tctggttatt accagatcga ggttgaggag tccgataagc acaaaaccgc ttttgtctgt      3180
     ccgttaggtt tctgggagtt caatcgaatg ccgcaagggg ttacgaatgc tcccagtacc      3240
     tttcaaagac tgatggaacg gtgtatgagc gatgttcatt taaaagaggt cgttgttttt      3300
     ctggatgact tgatagtgtt ttctgacacc ttagaggagc acgagcgtag gttgttgaga      3360
     gtgttgcatc gcttgcggga gtttgggttg aagctttctc tggaaaaatg cagatttttt      3420
     cagacttctg tgaaatatct tgggcacata gtgtctagca gtggtgtaga gaccgatcca      3480
     gacaaggttg cggcactgaa aacttggcct gttccgaaaa acctgaagga actcagatca      3540
     tttttaggtt tttcagggta ttaccgcaga tttattcgcg attatgctgc cattgtgaag      3600
     cctttaaatg atttgacgtc agggtatccg ccacatagaa agagctctaa agttagggaa      3660
     cggagagatt accacaatcc caaagagccc tttgggagcc gttggtctgc aaattgtcag      3720
     aaagcgtttg aagccatcat cgaagcactt actactgctc cagtgcttgg ttttgccgat      3780
     cctaaacttc cgtatgtttt acatacggac gccagcactg tggggttggg agcggctttg      3840
     taccaggagc aagaagggca gttaaaagta attgcttatg ccagccgtgg actttctcga      3900
     agtgaagccc gttatcccgc tcataaatta gagtttttgg cccttaaatg ggcggtaact      3960
     gaaaaattct acgattatct gtacggtaac caatttactg tagttaccga cagtaatcca      4020
     cttacttatg tattaacctc ggctaagtta gattctacga gctacaggtg gctttccgct      4080
     ctttcagcat tttcctttaa attgcagtac agagctggaa aacagaacat agatgctgac      4140
     agtttgtcca gacttcctca tggtgcttta aaaaatgatg ttgcatctca gaaggaacag      4200
     gaacgaattc gtcaatttgc actgaaccac ctgtttgatg atgtccagac catgtcacct      4260
     gaagtcattc aggccatatg tgataagcac attgtctatt gcaagtccgt ggattgtggt      4320
     gttactccta tgactttagt tgagtccctt gcaatccatg ttgatgcaat cccaggcagt      4380
     tttgatcatg atgagaataa ttttggttgt ccggtagtgc caacatttgg agagaatgat      4440
     ttaaaagaaa aacaaagatc tgaccccatt atccgtgaag tcattgtcca gttagaaaca      4500
     ggtgagacaa tccctccttt agtacggaaa gaacttccta tgctctcttt gcttatgagg      4560
     gaactcagta agttggagtt gcaaaatgga atcctctatc ggaggaggca tgatggagat      4620
     accatcactt atcagctagt tcttcctgag tctttgcgta gtatggtttt gacatgtcta      4680
     catgatgaca tggggcattt gggtgtagat cgtacactgg accttgtgag atctaggttt      4740
     tattggccta aaatgcttgt ggatattgaa agaaagatcc ggacctgccc taggtgtgtg      4800
     tgtcgtaaat ctttaccaga tcatgctgca cccttggtta atattcaagt gactcgaccc      4860
     cttgagctag tgtgtatgga ttttttgtcc attgaaccag attcccgaaa caccaaagat      4920
     gtgctggtta tcacagattt ctttaccaag tatgcggttg ctgttccaac ttgtaatcag      4980
     aagtcgcgta cagtggctaa agctctttgg gagaatttta tagttcatta tggaattcct      5040
     gaaaaattac acagtgatca aggggccgac tttgagtcaa agactataaa agaactatgc      5100
     gaattgatgg gaattcataa gattaggaca accccttacc accccagggg gaaccccgtc      5160
     gaacgattca accgtactct tttaaacatg ctcggtacgt tgaaaaaatg tgacaaagta      5220
     cattggagta gttttgtgaa acctcttgtt cacgcgtata actgcaccaa gcatgattcc      5280
     actgggttta gcccctatga attaatgttt ggacggcagc cgcggttacc tatagatttg      5340
     gcatttgatg ttccgctgaa cagagaggag tacaaaactc attcgcagtt tgtgcatgat      5400
     ttgaagtgta ggttgaaaaa aacgtatgat ttggcaatga aaagtactgc taaagttgga      5460
     gaaagaaaca aagctcgttt cgataagcat gttgttgaat ctgttttaga cattggggat      5520
     agggtcctgg taaaaaacgt gcacttgagg ggaaaacaga agttggcaga caagtgggaa      5580
     tcacttgtat atgttgttgt gaaaagagcg ggtgatctcc cagtgtacac tgtcaagcca      5640
     gagggtaaag aaggccctct aagaacgctt cacagagacc ttttactgcc ttgtgatttg      5700
     ttacagttac ctgaggaagt acttgcgttg cccagtactc ggaaacgtcc tccaactcgt      5760
     aaaaacccct gtaacaaagt acaagaccag gtagattttg actctgatga tgatgacagc      5820
     agcttagagc tgatgcacag tgatctttta ataccgacga acataacgtt tactgaggtt      5880
     tatgaagctg gaaccgggcc acaaactgag gttccctcaa ttccaatagt tcaagacact      5940
     gtcggtcaca tttcaactga aaatctacct gtttcagcag acagtccgat cgaatgttta      6000
     cctgaaatag agaattttca aatagacaat gcacctacct tgaatgttct acctgttgat      6060
     gatccagatg ttgtggagtc tgatgaaaac ttacctgcag aggttcctgt caatttaggt      6120
     gaccagcaaa tacctgtaga ggaaactgta aaagttagtg agcatgaaac tgaaacgaag      6180
     aaacatgaaa atgatggtaa tgttatcagg aagtctgata gagttaggca gaaaccacgg      6240
     atttttactt atcctgaatt gggtaacccg ttggtctcta tagtgcagtc tctttttcag      6300
     agtcttagca cggctgtgac tgactccatc attgaaaaca acagctttac aaaggcagct      6360
     gatgcagtag tcacacagcc tgttagtttc atgcacagag acgtgcatag agttaacggg      6420
     ggaggg                                                                 6426
//
ID   Gypsy-15-I_DR repbase;    DNA;    ZEB; 6739 BP.
XX
AC   .
XX
DT   11-FEB-2005 (Rel. 10.01, Created)
DT   11-FEB-2005 (Rel. 10.01, Last updated, Version 1)
XX
DE   An internal portion of the Gypsy-15_DR LTR retrotransposon - a
DE   consensus sequence.
XX
KW   GYPSY superfamily; Gypsy-15-I_DR; Gypsy-15-LTR_DR; Gypsy-15_DR;
KW   LTR retrotransposon; endogenous retrovirus; gag; integrase;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-6739
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-15_DR, a family of LTR retrotransposons from zebrafish.";
RL   Repbase Reports 5(1), 3-3 (2005).
XX
CC   [1] (Consensus)
XX
CC   Gypsy-15-I_DR is an internal portion of the Gypsy-15_DR
CC   LTR retrotransposon that belongs to the Gypsy superfamily.
CC   Its long terminal repeat is deposited in Repbase
CC   as Gypsy-15-LTR_DR. Gypsy-15_DR is characterized by
CC   4-bp target site duplications. The internal portion encodes
CC   two proteins: the 628-aa gag Gypsy-15_DR1p (pos. 112-1995) and
CC   1554-aa Gypsy-15_DR2p polyprotein (pos. 2022-6683) composed
CC   of the protease, reverse transcriptase, and integrase
CC   domains. PBS is complementary to Arg-tRNA. The internal
CC   portion is flanked by 99% identical LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           112..1995
FT                 /product="Gypsy-15_DR1p"
FT                 /translation="MDVVRRENITVANSLIVSGLTLTELDNELEAYLLRYG
FT                 SIRRNVIIDDPASDFHKLLIVEFNENSAFQTLHPHLPLTLGSLSDPSITFR
FT                 VRALAAVCDPPVVSTATEGYLEQLKAIAKESGRPFQTVLQEELEKLKETHS
FT                 VDQTLAESQKIEVADTQSRDNTLISESPNVAEIDPQDSESKNPTKNRIIYV
FT                 SPPLPETTADDNLTTVFPSSSTNIMGDPQVQRMVVEHVVKTSDAMMSQQTS
FT                 IRLRVFSGKSPRPPNEPDYDTWRASVDYLLNDPSISDLHRTRKILDSLLPP
FT                 AADVVKHVRPPALPAVYLELLESVYGSVEDGDELLAKLMGTFQNQNEKSSD
FT                 YLHRLQVLLSAVIRRGGIKESERDRYLLKQFCRGCWDSRLIVDLQLEKKEG
FT                 QLLTFAELTILIRTQEDKNASKEERMRKHFGMTKPANVYPKTRAISNQVSA
FT                 CACDVSSTYSSEAGSLKKQVAEIQAQVATLKQSPDKKSIKGQSERAELVAL
FT                 KRTVEDLCVQVAAVKASVAEGLKGNNPEQSEIARLQRQVAELQAQGIVQKA
FT                 YQAPHMQRSPGTEIGRALKKEPLRTNRPRPGYCFRCGDDGHLAVNCENPAN
FT                 PPKVEEKRLKLREQQHQWDILHGRPAQFLN"
FT   CDS           0..0
FT                 /product="Gypsy-15_DR2p"
FT                 /translation="MEAKLYNSRPGCYKQIPELSQTTVSFKHLPKGLVGTK
FT                 CTAQVTIGGMEVNCLLDTGSQVTTIPHSFYKAHLSDFPLEPLKNLLEVEGA
FT                 NGQAVPYLGYIELTLKFPKEFIGAEVEVPTLALVVPDLTSFSQILVGTNSL
FT                 DVLYGKCAQDCAADVKSSFPGYQAVLKVLEARWRQASSETLGYVKFKGNSP
FT                 EIVPAGGMVVLEGQAHFNGPHTEKLVTLEPPSVPLPNGLLIASCLHTSPNK
FT                 RLSKLSVLLRNTTQTDIAVPPKVMLAEIHAIQSVLNQHHQSSDAKAEESIP
FT                 TCANLTFDFGDSLPTTWKERITKLLNSMPEVFSLHDLDFGHTKKVKHQIKL
FT                 NDETPFKQRARPIHPQDIDAVRRHLQELLVTGVIRESDSPFASPIVVVRKK
FT                 DGSVRLCVDFRKLNAQTIKDAYALPNLEEAFSTLTGSKWFSVLDLKSGFYQ
FT                 IEMEEVDKAKTAFVCPLGFWEFNRMPQGITNAPSTFQRIMERCMGDLNRKQ
FT                 VLVFIDDLIVFSDTLEEHESRLLQVLNRLKEYGLKLSPEKCRFFQTSVKYL
FT                 GHIVSHNGVETDPAKVEALKTWPRPRNLKELRSFLGFAGYYRRFVRDFSKI
FT                 VKPLTDLTAGYPPLRKSCNTKQKDCEYFNPKAEFDTRWTTDCQDAFDSIID
FT                 NLTSAPILGFANPKHPYVLHTDASTTGLGAALYQEQEGQLRVIAYASRGLT
FT                 KGESRYPAHKLEFLALKWAVTSKFNDYLYGAEFTVVTDSNPLTYILTSAKL
FT                 DATSYRWLSSLSTYNFKLQYRAGSQNQDADGLSRRPHGELVDDLTSLKERE
FT                 RIRQFTLHHLMESEDESPVVMAEVVKAICEKHQVVGSPQGLHCIPSVTLVE
FT                 SLTHCVDVLPYEFQHEDEHGLPSLPHLSQAALAELQRKDPELKIVIERVES
FT                 GVKPCKLRELSSAVSLWLKEWKRLELRSNVLYRKRQEHGASSYQLALPTSL
FT                 RNTVLQSLHDDMGHLGIERTLDLVRTRFFWPKMSHAVVQKVKTCERCVRRK
FT                 TPPEKAAPLVNIQTSRPLELVCIDFLSLEPDQSNTKNILVITDHFTKYAMA
FT                 IPTRNQTAQTVAKSLWDHFLIHYGFPEKLHSDQGADFESRTVKELCKVAGI
FT                 HKVRTTPYHPRGNPVERFNRTLLQMLGTLENERKSRWKEYVKPLVHAYNCT
FT                 RHDTTGYTPYELMFGRQPRLPVDLAFGLPVDTPNKSHSQYVENLKNRLRES
FT                 YEMATKNAGKIAERNKQRFDKHVVALTLEEGDRVLVRNVRLRGKHKLADKW
FT                 EQNVHVVVKKAHNLPVYTVKPEGKDGPLRTLHRDLLLPCGFLQSNKLVEPP
FT                 KQKPARKPLTRFSLNNEMQESDLISENSESEEEHIVSNVPEGTLSFETQII
FT                 VGPEYIPVGESGVSLTVLDPAVEDVSVPESVVSNPEEPAKKHLPGVEPVEK
FT                 ETNELIEVEKNSNALESSNTVPFVLTEKNSELEQSSELWSESPDQTAKNVL
FT                 DSFEWETEQNLIPSNVGHTEILQNEQPTCNEPDDILLRRSQRERRPPKKFE
FT                 YPQLGNPLTLVIQSLLQGLDTALCSSLEKSVVAPVRHL"
XX
SQ   Sequence 6739 BP; 2013 A; 1449 C; 1549 G; 1728 T; 0 other;
     gtaaagttgg cgagccagcc aggagtctaa ttattgcagc aagggtgtca aacgacaaga        60
     aaaagggaat tgtatcagta gcaaaccgtt ttaaaaattt gagctgtcat aatggatgtc       120
     gtaagacgag aaaatataac tgtagcgaac tctctcatag taagcggtct aacgttaact       180
     gagttagata atgagctgga agcatatttg ctgagatacg gctctatccg tcgcaacgtg       240
     ataattgatg acccagcatc agactttcac aagctgctga ttgtggagtt taatgaaaac       300
     tctgcgtttc aaactttgca tccccatttg cccctgactt tgggaagtct ttctgatcca       360
     agcattacct ttcgggtacg cgctttagcc gctgtgtgtg acccacctgt cgttagcact       420
     gccactgaag ggtaccttga gcaattgaag gccatagcca aagagagtgg aaggcctttc       480
     caaaccgtgt tgcaggagga gttagagaaa cttaaagaaa ctcattcagt agaccaaact       540
     ctagcagaat ctcaaaagat agaggttgct gacacacagt ctagagataa cactctgatt       600
     tctgagtcac ctaatgtagc agagatagac ccccaagatt ccgaatccaa aaacccaacc       660
     aagaatagaa tcatttatgt gtccccgcct ttacccgaaa ctaccgctga tgataacctt       720
     acaacagttt ttccttcctc ttcgacaaac ataatgggcg atccccaggt tcaaagaatg       780
     gtagttgagc atgtagtaaa aacgagtgat gccatgatgt ctcagcagac atccattcgt       840
     cttagggtct tttcagggaa gagtccccgc ccccctaacg aacctgatta tgacacctgg       900
     cgtgccagtg ttgactattt gcttaatgac ccatctattt cagacctgca tagaacacgt       960
     aaaatcctgg acagtctctt acctccagcc gcagatgtag ttaaacatgt gcgtccccca      1020
     gcccttcctg ctgtctatct tgagttgctg gagtccgttt atggttctgt tgaagatgga      1080
     gacgaactgt tagcaaaact aatgggtact tttcagaatc aaaatgaaaa atcatccgac      1140
     tatctccatc gccttcaagt cctgttaagc gcagtaatca ggcgaggtgg tataaaagag      1200
     agtgaacgtg accgttatct tttaaaacag ttctgtagag ggtgctggga tagccgcctc      1260
     attgttgatc ttcagcttga gaaaaaagag ggccagttac ttaccttcgc tgaattaacc      1320
     atactaattc gaactcagga agacaaaaat gcttctaagg aggagcgtat gaggaaacac      1380
     tttgggatga caaagccagc aaatgtttac ccaaagacac gagctatctc aaaccaagtg      1440
     tcagcttgtg catgcgacgt gtctagcact tatagttccg aagcaggatc tttaaagaaa      1500
     caagtcgcag aaattcaagc tcaagtcgcc actttaaaac agtctcctga taaaaagagt      1560
     attaaaggtc aatcagaaag ggctgagtta gttgctttaa agaggactgt tgaagacctt      1620
     tgcgttcagg tggctgctgt aaaagcatct gttgctgagg gactaaaagg gaacaatcca      1680
     gagcaatcag aaattgccag attgcagcga caggtagcag agctacaagc acaaggtatt      1740
     gtacagaaag catatcaagc tcctcatatg cagagatccc ctggaactga aattggcaga      1800
     gctctcaaga aagagccttt aagaactaac agacctaggc cagggtactg ttttcgatgc      1860
     ggagatgatg ggcatttggc agtcaactgt gaaaaccctg caaatcctcc aaaagttgag      1920
     gaaaagcggc tcaagctgag agagcagcag catcagtggg atatcctaca tggaagaccc      1980
     gcccagtttt taaactaggt gaggtctcta tagcggggca tatggaggcc aaactttata      2040
     atagccgccc tggatgttat aaacagatac ccgagctcag tcaaaccact gtgtctttca      2100
     aacatttacc caaaggtctg gtaggaacca aatgtacagc ccaagtcacc attgggggga      2160
     tggaggtaaa ctgcctttta gacacggggt cgcaggtcac cacaataccc cattcgtttt      2220
     acaaagcaca tttatctgat ttccctttgg agcccttgaa aaatctactg gaggtagaag      2280
     gagctaatgg acaggctgtg ccatatttag ggtacatcga acttacctta aaattcccca      2340
     aagaattcat cggggcagag gttgaggttc ctacattagc tttagttgtt ccagatttaa      2400
     ccagtttttc ccaaatttta gttggaacaa actcgttaga tgtgctttat ggtaaatgtg      2460
     ctcaagattg tgcagctgat gtcaagtcta gttttcctgg ctatcaagct gtgcttaaag      2520
     tgttggaagc tagatggagg caggccagca gtgaaaccct tggttatgta aaattcaagg      2580
     gaaactcccc tgagatagta cctgcaggag gaatggtggt gttagagggt caagcccatt      2640
     ttaatggtcc ccacacagaa aaactggtaa cactcgaacc accctccgtt cctttgccca      2700
     atggtcttct tattgctagt tgcttgcaca catcaccgaa taaacgtctt tccaagctgt      2760
     cagttctgtt aagaaatacc acgcaaactg acatagcagt tcctcctaaa gtcatgttag      2820
     ccgagattca tgctattcaa agtgtcctga accagcatca tcagagttca gatgctaaag      2880
     ctgaagagtc aatacccacc tgtgccaact taacatttga ctttggcgac tctctgccca      2940
     cgacctggaa agaaaggata acaaaactgt taaactctat gccggaagtt ttctccctgc      3000
     atgatttgga ttttggtcac acaaagaagg tcaagcacca aataaagtta aacgacgaga      3060
     caccattcaa acaaagggcc aggcccatac atccccaaga catagacgct gtgaggaggc      3120
     acctccaaga gttgctagtt actggtgtta tccgggagtc tgattctcca tttgcttcac      3180
     ccatagttgt tgtccggaaa aaggatggct cagtgcggct atgtgttgac ttccggaagc      3240
     taaatgcaca gacaataaaa gacgcctatg cgttaccaaa tttagaggag gctttctcca      3300
     cactgacggg ctcaaaatgg ttttctgtgc tcgatctgaa gtctgggttt tatcaaatag      3360
     agatggagga agttgataag gccaagactg catttgtctg tccacttggc ttctgggagt      3420
     tcaaccgtat gccgcaggga attacaaatg cccctagcac ctttcaaagg attatggaac      3480
     ggtgcatggg agatctaaat cggaagcaag tccttgtctt tattgatgac ctcattgttt      3540
     tttctgatac tttagaggaa catgagtccc ggttgttgca agtcctaaac cgacttaagg      3600
     agtatggatt gaaattgtca cctgagaagt gccggttctt ccaaacctca gtgaagtacc      3660
     ttggccacat tgtttctcac aatggggtgg aaacagaccc tgcaaaggta gaagctttaa      3720
     agacctggcc aaggccaaga aacctaaaag agctaaggtc ctttttaggc ttcgctggat      3780
     attacaggag gtttgtgcgt gacttttcaa agatagttaa accgttaact gaccttactg      3840
     caggatatcc tcctcttaga aagagttgta acacgaagca gaaagactgt gaatatttca      3900
     atcccaaagc ggaatttgac actcgatgga ctacagactg tcaggatgca tttgactcca      3960
     taatcgacaa tctcacatct gcacctatat tgggctttgc aaaccccaaa catccctatg      4020
     tgctacacac cgatgcaagt accaccgggc tcggtgcagc tttgtaccaa gaacaagagg      4080
     ggcagctgcg agtcatagct tatgctagta gagggttgac taaaggtgag agcaggtacc      4140
     ctgcacataa acttgaattt ttagcgctaa aatgggctgt aacttccaag tttaatgact      4200
     acctttacgg tgcagaattt actgttgtga cagatagcaa ccctctaaca tatatattaa      4260
     cttcggcaaa acttgacgct accagttacc gctggttgtc cagtctatcg acttataatt      4320
     ttaagctgca gtacagggca gggagtcaaa accaagatgc agatggtctc tctcgaaggc      4380
     cacatggtga gcttgtggat gacctaacct cactaaaaga gagggaaagg attaggcaat      4440
     tcactttgca ccatcttatg gagtcagaag atgagtcacc tgttgtgatg gcagaagtag      4500
     tgaaagcgat ctgcgaaaag catcaagtag ttgggtcacc ccaaggactc cattgtatcc      4560
     cttcggttac tttggttgag tctcttaccc actgtgtgga tgtccttcca tacgagttcc      4620
     agcatgagga tgaacatggt ctcccaagtc tccctcatct ctcacaagct gctttggcag      4680
     agttgcagag aaaggatcca gagttgaaaa ttgtcattga aagagtggaa agtggggtta      4740
     agccttgtaa gttaagggaa ctatcttctg ctgtgagctt atggttaaag gaatggaagc      4800
     gtcttgagtt gaggagtaat gttctgtaca gaaagaggca ggaacacgga gcttcatcat      4860
     accagttggc tttacctacc tcacttagaa acaccgtatt acagagtctc catgatgaca      4920
     tgggtcatct tggtattgaa cgaacactgg atcttgtgag gacaagattc ttttggccga      4980
     aaatgtctca tgcagtggta cagaaggtaa aaacctgtga acgctgtgtt cggcggaaaa      5040
     cacctcctga aaaagcagct cctttggtta atattcaaac aagtaggccc cttgagttgg      5100
     tgtgcattga tttcctatcc ttagagccgg accaaagcaa cactaagaac attctggtca      5160
     tcactgacca ttttacaaag tatgctatgg ccatacctac tcgaaaccaa actgcccaaa      5220
     cagttgcaaa aagtctttgg gaccacttct taatacacta tgggtttccc gagaagctgc      5280
     atagtgacca aggagccgac tttgagtcac gtactgtcaa ggagctgtgt aaggttgcag      5340
     gaatacacaa ggtcagaaca accccatacc atcctagggg gaatccagtg gaacgattta      5400
     atcgtacact gctccaaatg cttggaacac tggaaaatga gaggaaatct aggtggaagg      5460
     agtatgtaaa acccctagtg catgcctata attgcaccag gcatgacaca actggatata      5520
     ctccctacga gctcatgttt gggcgacaac ctcgtcttcc tgttgacttg gcattcgggt      5580
     tgccagtgga cactcccaac aagtctcact cacagtatgt ggaaaacttg aagaatcgtt      5640
     tacgtgaaag ttacgagatg gctaccaaaa atgctggaaa gattgcagaa cgtaacaagc      5700
     aaaggtttga caagcatgta gttgccttaa ctctggaaga aggtgaccga gttctagtga      5760
     ggaatgtgcg tttgcgaggc aaacataaat tagctgacaa atgggagcaa aatgttcatg      5820
     ttgttgtcaa gaaagcacat aacctaccgg tgtatactgt caaaccagaa ggaaaggatg      5880
     gtccgttacg aactttacac cgtgacctct tgttaccctg tggatttttg caatcaaata      5940
     agcttgtaga accaccaaaa cagaaaccag ccaggaagcc tctaaccaga ttttccctta      6000
     acaatgagat gcaggaatca gacttaattt ccgaaaactc agaatctgag gaggaacaca      6060
     tcgtcagtaa tgtgcctgaa ggaacattaa gttttgaaac tcaaattatt gttggtcctg      6120
     agtacatacc agttggggag tctggtgtta gcttaacagt cctcgatcct gctgtggaag      6180
     acgtgtctgt tccggaatct gtagtaagta atccagaaga acctgcaaag aaacacttac      6240
     ctggtgtgga acctgtggaa aaagaaacaa atgagttaat tgaagtagaa aaaaattcca      6300
     atgcacttga gtcaagtaac actgtgccat ttgtcctgac tgagaaaaac tcagagttgg      6360
     agcaatcctc agagctttgg agtgagtccc ctgatcaaac agccaagaat gtgctagata      6420
     gttttgagtg ggaaactgaa caaaatctga tacccagcaa tgtgggacat actgaaattt      6480
     tgcagaatga gcaacccact tgtaatgaac cagatgatat tttactcaga cgatcacaga      6540
     gggagcgacg gcctcccaag aagtttgaat atccccagtt agggaatcca cttaccttag      6600
     ttatacagtc tttgttacaa ggccttgata cagctctctg ttcttcttta gagaagtcag      6660
     ttgttgctcc agtgcgtcat ctgtgaatac tgtttgctgt gcaatgcaaa gggacttgca      6720
     tgtattcgag aggggaggg                                                   6739
//
ID   TZF28       repbase;    DNA;    ZEB; 1613 BP.
XX
AC   U51227;
XX
DT   10-APR-1997 (Rel. 3, Created)
DT   10-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Danio rerio transposon Tzf.28.
XX
KW   DNA transposon; TZF28.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-1613
RA   Lam L.W., Lee S.T., Gilbert W.;
RT   "Active Transposition in Zebrafish.";
RL   Unpublished.
XX
RN   [2]
RP   1-1613
RA   Lam L.W., Lee S.T., Gilbert W.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (13-MAR-1996)Wan L. Lam,
RL   Molecular and Cellular Biology, Harvard University, 16 Divinity
RL   Avenue, Cambridge, MA 02138, USA.
XX
DR   GenBank; U51227; Positions       1    1613.
XX
SQ   Sequence 1613 BP; 531 A; 305 C; 337 G; 440 T; 0 other;
     tacagtgtat ccgcaaagta ttcatagcgc ttcacttttt ccacattttt tatgttacag        60
     ccttattcca attccaaaat ggattaaatt aatttatttc atcaacattc tacccacaat       120
     accccataat gacaatgtga aaaaaatttt tttttttaat tattgcataa aaaaaaaaaa       180
     gctgaaaaat cacatgtaca taagtattca cagcttttgc agtgaagcta aattgagctc       240
     aggtacgttc tgtttcaagt gttcattctt gaaatgtttc agacaggtta attggaattt       300
     cacctgtggt aaattaagtt gatttggaca tgatttgaaa aggcatacac ctgtctatat       360
     aaggtcccag ggttgacagt gcatgtcaaa gcacaaacca aacatgaaga caaaggaatt       420
     gtctgcagac ctccgataca ggattgtcgt caaggcacaa ggctggggaa ggttacagaa       480
     aaaatttctg ctgctctgaa agttccaatg agcacagcga cctccatcat ccatgtggaa       540
     gatgtttgga accaccagga ctcttactag agctggccag ccatctaagc taagtgatca       600
     ggagagaagg gccttagtta gggaggtgat caataactca atggtcactc tgtctagctc       660
     cagccatctt ctatggagag aggagaacct tacagaagga caaccatctg tgcagcaatc       720
     caccaatcag gcctgtatgg tagattagcc agtgttaacc actcctcgtc tggaatttgc       780
     aaaaaggcat ctgaaggatt ctcacaccat aagaaacaaa attctctggt ctgatgagac       840
     taaaattgaa ctctttagag tgaatgccag gcgttacttt tggagaattc aggcaccgct       900
     catcaccagg ctaacaccat cactacagtg aagcatggtg gtggcatgca tcaagctgtg       960
     gggatgtttt ttcagcagca tgaaatggaa gactagtcag aatagaggga agatgaatga      1020
     agcaatgtac agagacatcc tgaagtgaaa accttcttca gagtaatctt gatttcagac      1080
     tggggtgacg gtttatcttc cagcaggaca atgaccgaaa gcacactgcc aaaatatcag      1140
     tggagtggct tcacaacaac tcgatgaata ccttaagtga accagccaga gcccagacct      1200
     aaatcctttt gaatatctct gaagagatgt aaaatggctg tacaccgtcg cttcccatcc      1260
     aacctgatag agtttgagag gtactgcaaa gaggaatggg cacaaattct caatgacagg      1320
     tgagccaagc tgtggcatga tattcaaaaa gagttgaggc tgtagttgct gccaaagatg      1380
     catcaacaaa gtattgagca aagactgtac atttttatat gaacgtgatt ttttgaccct      1440
     tttaatttta ataaatttga aacaatttca aaaaatgttt tttcacattg gcattatggg      1500
     caactgtgtg tagaatgttg aggaaataaa tgaaattaat ccgtttttga ataaggtaaa      1560
     aaggtggaaa aaaatgaggt agaattatga tatcactttc ccgatgcact gca             1613
//
ID   Tc1-4_DR    repbase;    DNA;    ZEB; 1572 BP.
XX
AC   .
XX
DT   11-JUL-2002 (Rel. 7.06, Created)
DT   11-JUL-2002 (Rel. 7.06, Last updated, Version 1)
XX
DE   Tc1-4_DR is an autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; TIR;
KW   Autonomous DNA transposon; TA target site; Tc1 superfamily;
KW   Dr000076; Dr000078; Tc1-4_DR.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1188-2
RA   Bao Z.;
RT   "Dr000076, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/.
XX
RN   [2]
RP   1424-614
RA   Bao Z.;
RT   "Dr000078, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/.
XX
RN   [3]
RP   1-1572
RA   Kapitonov V.V., Jurka J.;
RT   "Tc1-4_DR, an ancient Tc1-like autonomous DNA transposon from
RT   zebrafish.";
RL   Repbase Reports 2(6), 23-23 (2002).
XX
CC   [3] (Consensus)
XX
CC   Tc1-4_DR copies are flanked by the TA target site duplications
CC   generated upon their integration in the genome.
CC   Tc1-4 has perfect 51-bp terminal inverted repeats that belong to
CC   ~200-bp imperfect TIRs.
CC   There are approximately 1500 copies of Tc1-4_DR harbored
CC   by the zebrafish genome, they are ~13% divergent from
CC   the consensus sequence.
CC   The reconstructed 340-aa transposase, Tc1-4_DRp, is encoded by
CC   this transposon (positions 350-1369).
XX
FH   Key           Location/Qualifiers
FT   CDS           350..1369
FT                 /product="Tc1-4_DRp"
FT                 /translation="MGRGSPVCQQICEKIIEMFKNNVPQRKIGRHLDISPS
FT                 TVHNIIKRFKESGGISVHKGQGCKPKLNNRDLRSLRRHCIKNRHSSISDIT
FT                 TWAQDYFGKPLSSTTIHSYIHKCQLKLYCAKRKPYVNSVQKRCRLLWARRH
FT                 LGWTITQWKCVLWSDESVFQVFFGRNGRRVLRTKEEKDHPDCYQQQVQKPG
FT                 SVMVWGCVSALGKGNLHFCDGTINAEKYIEILEHNMLPSRRYIFQGRPCIF
FT                 QQDNAKPHSAHITKSWLRRKRIQVLDWPVCSPNLSPIEKVWCILCGKMLQR
FT                 RPCTVAHLKTCLQEEWDKITPETLHHLVSSVPKRLLSVVKRNGNITKW"
XX
SQ   Sequence 1572 BP; 516 A; 294 C; 326 G; 436 T; 0 other;
     caaccccaaa tcagaaaaag ttgggacagt atggaaaacg caaataaaaa agaaaatagt        60
     gatttccaaa tttactttga cttgtatttc attgcagaca atatgaacac aaaatatttc       120
     atgttttgtt tgtggtcaac ttcatttcat ttgtaaatat acatcctttc ctgtcattca       180
     gacctgcaac acattccaaa aaatgggaca ggagcaattt agggctagta atcaggtaaa       240
     ttggttaaat aatgatgtga tttgaaacag gtgatgtcaa caggtgattg taattatgat       300
     ttggtacaaa agcagcatcc aagaaaggtc tagtccttta ggagcaaaga tgggcagagg       360
     atcgccagtt tgccaacaaa tatgtgagaa aattattgaa atgtttaaaa acaatgttcc       420
     tcaaagaaag ataggaagac atttggatat ttcaccttca acagtgcata acataattaa       480
     aagattcaag gaatctggag gaatttcagt gcataaagga caagggtgca agcctaagct       540
     gaacaaccgt gatctccgat ccctcaggcg gcactgcatc aagaatcgtc attcatctat       600
     aagcgatatc accacatggg ctcaggacta ctttggcaaa cctttgtcaa gtaccacaat       660
     acatagttac atccacaaat gccagttaaa actgtactgt gccaaaagga agccctatgt       720
     taacagtgtc cagaagcgct gtcgacttct ctgggctcgg aggcatctgg gatggaccat       780
     cacacagtgg aaatgtgtac tgtggtcaga tgaatcagta tttcaggtat tttttgggag       840
     aaatggacgc cgtgtgctcc ggaccaaaga agaaaaggat catccagact gttaccagca       900
     acaagtccaa aagccagggt ctgtcatggt atggggttgt gtcagtgccc ttggcaaagg       960
     taacttgcac ttctgtgatg gcaccattaa tgctgaaaag tacatagaga ttttggagca      1020
     caatatgctg ccttcaagaa gatatatttt ccagggacgc ccatgcatat ttcaacaaga      1080
     caatgcaaaa ccacattctg cacacattac aaagtcctgg ctgcggagga agaggataca      1140
     ggtacttgac tggcctgtct gcagtcccaa cctgtctcca atagagaaag tgtggtgcat      1200
     tttgtgtggc aaaatgctac aacgaagacc ctgtactgtt gcccacctta agacttgttt      1260
     gcaggaagaa tgggacaaaa ttacacctga aacacttcat cacttggtgt cttcagtccc      1320
     taaacgtctt ttaagtgttg tgaaaaggaa tggcaacatt acaaagtggt aaatgcttta      1380
     ctgttccaac ttttttaaaa tgtgttgcaa gaaccaaaat tgaaatacgt gtttatttta      1440
     aaaaaaaata atcatgagga acacattaaa taatgtttgt tgtattgtct gcaatgaaat      1500
     acaagtcaaa gtacattaac tttttttatt tgcgttttcc atactgtccc aactttttct      1560
     gatttggggt tg                                                          1572
//
ID   DIRS1_DR    repbase;    DNA;    ZEB; 6132 BP.
XX
AC   .
XX
DT   11-FEB-2002 (Rel. 7.01, Created)
DT   11-FEB-2002 (Rel. 7.01, Last updated, Version 1)
XX
DE   DIRS1_DR is a DIRS-like LTR retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   DIRS superfamily; DIRS1; DIRS1_DR; endogenous retrovirus;
KW   phage integrase; reverse transcriptase RNase H.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   414-5132
RA   Jekosch K.;
RT   "DIRSDR1: putative non-LTR retrotransposon.";
RL   Repbase Reports 2(2), 9-9 (2002).
XX
RN   [2]
RP   1-6132
RA   Kapitonov V.V., Jurka J.;
RT   "DIRS1_DR, a family of DIRS-like endogenous retroviruses in
RT   zebrafish.";
RL   Repbase Reports 3(1), 1-1 (2003).
XX
CC   [2] (Consensus)
XX
CC   DIRS1_DR is a family of DIRS1-like retrotransposons. These
CC   elements
CC   are related to gypsy-like LTR retrotransposons and endogenous
CC   retroviruses.
CC   There are ~100 copies of DIRS1a_DR in the genome, they are ~0.3%
CC   divergent from the consensus sequence. Therefore, this family
CC   retrotransposed in the zebrafish genome very recently.
CC   The unusual structure of DIRS1_DR is depicted in the next figure.
CC   GTTCCCCTTCGGTTGGGGAACTTCAGTGCCATGAATGGGAGGATTCGGATCAGAAGCCGCTTATCTGGAG
CC   <====== ======> <---------------------------------------------
CC   AGTATTGAACGGGCCAATGAATGAAATTAATTGGCAGCGTAAGCTTGCGCAGGTGTGCGACATCTGCAAT
CC   ----------------------------------------------------------------------
CC   TATCTCAGCATATAAGCACACCTGAAGCCAGCAGACGCCATCCTTTTCGCTTCAGATCCTTTCTGAGTGA
CC   -----------------------------------------------
CC   ......................................................................
CC   ......................................................................
CC   GGTGCAGTCATTATGGCGCTTTCCATATTCTCCCATTCATGGCACTGAAGTTCCCCAACCGAAGGGGAAC
CC   <====== ======>
CC   <~~
CC   GTTCGAGGTTACAGAAGTAACCCTTCGTTCCCCGAGGAGGGGAACGGAAGTGCCATATTCCGTCGCCATA
CC   ~~~~~~~~~~~~~~~~~~~~~~~~~~<====== ======>
CC   ATGACTGTCCCTTAGCTGTTTGAAAGTCTCTTCAGCTT
CC   AAAAGGATGGCGTCTGCTGGCTTCAGGTGTGCTTATATGCTGAGATAATTGCAGATGTCGCACACCTGCG
CC   ----------------------------------------------------------------------
CC   CAAGCTTACGCTGCCAATTAATTTCATTCATTGGCCCGTTCAATACTCTCCAGATAAGCGGCTTCTGATC
CC   ----------------------------------------------------------------------
CC   CGAATCCTCCCATTCATGGCACTTCCGTTCCCCTCCTCGGGGAACgaagggttacttctgtaacctcgaacgtt
CC   ----------------------> <======
CC   ======>~~~~~~~~~~~~~~~~~~~~~~~~~~~~>
CC   Fig.1 Termini of DIRS1_DR. The 163-bp sub-terminal inverted
CC   repeats are
CC   underlined by a single line.
CC   DIRS1_DR encodes three ORFs. ORF1 (positions 414-1632) codes for
CC   the
CC   gag-like protein. ORF2 (positions 1633-2597) codes for reverse
CC   transcriptase and RNase H. ORF3 (positions 2598-5129) codes for
CC   the
CC   phage integrase.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ORF3p"
FT                 /translation="MRSSSGLVCSHRPEGRVFPCLHSSTPPPISAVCVRGS
FT                 SVAVQGPPLRALSVSAGLHQTRGGCPSAPSARGHSHTQLSRRLADFSPLAG
FT                 AIDYAQGRGASASPPTGASGQPRKEQTRPRAEDFFSRDGAGLDHHGSAPLR
FT                 GTRSPVAELSEGARQQTSGPTEVLSEAPGAYGIRSRRHAARVAPYETTSAL
FT                 ASRSGPQTRMARGHTPGLGYCAVSPRPQPLERPLVPTGRCASRTGVQPCCC
FT                 FNRRFQHGLGGRVSRACGCGPLEGCPAALAYQSPRAVGSVPRSPPLFTGAG
FT                 AATRAGQDGQYGGGGVYQPHGGYALSPHVSARPPSAPLESPAAEIAARHSR
FT                 PRHAQSCSRCALTTAVTPWRMETPPRVCSADMGAIRGGPDRSVCFPRERSL
FT                 PVVFFPDRGLSRHGCTGPQLASGHAQVCVSPSEPARAVSVQGQGGRGTGSA
FT                 SCAPLAQPDLDIRALTPRDGPPLADPFERGPTLSGTGHHLAPSPRSLEPPR
FT                 VVPRREEDLGNLPTAVVNTITQARAPSTRRAYALKWSLFTEWCVSRREDPR
FT                 NCQISVVLSFLQEKLDSRLSPSTLKVYVAAISAYHSAVAGGTVGKHNLVIQ
FT                 FLRGARRINPSRPPLMPSWDLALVLTSLRSDPFEPLESVSLRFLSLKTALL
FT                 VALASIKRVGDLEAFSVSDSCLEFGPDYSHVILRPRPGYVPKVPTTPFRDQ
FT                 VVNLQALPPEEADPALSLLCPVRALRIYVDRTQNFRSSEQLFVCYGGRQQG
FT                 SAVSKQRLSHWIVDAISLAYSSRGQPCPPGVRAHSTRSVASSWARARGASL
FT                 TDICRAAGWATPNTFARFYNLRVEPVSSRVLGNPLVIEETTR"
XX
SQ   Sequence 6132 BP; 1117 A; 1898 C; 1706 G; 1411 T; 0 other;
     gttccccttc ggttggggaa cttcagtgcc atgaatggga ggattcggat cagaagccgc        60
     ttatctggag agtattgaac gggccaatga atgaaattaa ttggcagcgt aagcttgcgc       120
     aggtgtgcga catctgcaat tatctcagca tataagcaca cctgaagcca gcagacgcca       180
     tccttttcgc ttcagatcct ttctgagtga gtcgatgagg gttcctcttg ctgatcagca       240
     cttcagagcg aacgagtgtg tctcccggtc cagagtgggt cttcgcggtg gcagacggtc       300
     gagctgggtt actcccttgc ctgcggttct ttgggtccgg tcctccagag cggtgcgtat       360
     agttgcaact ttcctaaaag agcaacacag tcgtgcagca cgtccttttc aggatggcgc       420
     tccgactgtg cgtttctgga tgcgggggtt tcctgtctcc ggatgatgga cacgatcact       480
     gcattgcatg tttgggggtc cagcatgtta atgcggtgct cgcgggcggt tcatgtcgtc       540
     attgcgatgc catgaccgtt gcacagctaa gatcgcggct aactttcgca agagagcgag       600
     ccaccccagt tgcctcctgt tctaaaaaag cagcgggcgc tcgggcagat ctgagggttt       660
     cagcgggagc taatccgccg cccacgggct cgcggacctc tcgctcctca cggcgctcca       720
     tccaagcttc gggtggtgag agtgatccgt ctaaccagat ggtagctctc acactcgctg       780
     acaccggaga tcagatgtcc tccgcggcat cggagggtgg gctttcactg tccgacgaag       840
     atccggaccc gctcgccccc tccgggcagg tgagcgctgt caaatcggat cctgaagcgg       900
     acatgttagc cgtgctttcc cgggctgctt cggccgtggg gttggagatg gtttatcccc       960
     cagctccgcg gccggaccga ctagatgggt gctacgtaga ggaccagaag gcgaagcctt      1020
     cgaagcctct cgtccccttc ttcccggaag tgcacagtag gctcacgcag tcctggaggg      1080
     cacctttctc tgcccgtgct gcgagtgcct ccgccctcac cgcccttgac ggcggagctg      1140
     ccagggggta tgaggcgatc ccgtcagtgg agcgcgctat cgcggtcaat ctttgtccgc      1200
     gcggcgcctc tacgtggcgg ggtttgcccc gcctcccgtc caaagcctgt aggttgtctg      1260
     cctccctcgg agccagagct tataaggctg cgggccaggc tgcttctgct ttgcacgcga      1320
     tggccaccta ccagcgctac caagcgcagg cgctggccga gctgcacgag ggcgggtcca      1380
     acccaagctt attacatgag ctgcgcaccg cgaccgacta tgctcttcgg actactaagt      1440
     ccgccgcgtg tgcgctgggg aggacgatgt ccacacttgt ggttcaggaa cgccacctct      1500
     ggctaaacct ggccgatatg cgcgacgttg acaaagttcg ctttcttgac tcgcccatat      1560
     cccaggctgg cctgttcggc gacaccgtcg gtgaattcac ccaggaattc aaggcggtga      1620
     aagagcagtc ggatgcgatg ggcaatgtca tctatcggcg tggccgtaag cccgctccgc      1680
     ccgccgagcc atccacctcc gctgttcctc gccgagggcg cccgccaacg agtgctgccc      1740
     cgcccccgcc tgcgcctccg gccaagcggg cgcggcgttc acctcgaaag caggcagccc      1800
     ctcctgccca gggcgccgtt aagtccggta aacggaccgc gaagcgtccc tgagacaggc      1860
     catccggaga agaggaaact tgctctttcc ccgctggagg gcggggcccc gataacaacg      1920
     gtacttttca gtgccaccaa aacatcagta aaagagcact ttttcccttc cccggatgtg      1980
     actgcacgag ttctgccagt ccgggacgcg ctgccttccg gctcgcagac tctacgtgct      2040
     tcgccagtgg ctcacgagcg ctggggggac ggtctccctt ccctcagccc tccagccccc      2100
     tctccggagt cagggtgcgg agccagagcg aatcgctctc ctccagcttt tccgcgggac      2160
     cctcgtgctt cccggatcag cacacccact ccgcgctgcc ccaccgctgg tacgtcagcg      2220
     attgtagcga tgactccatt agcgagggct ctgcctgcct ggttagcgcg ggccagcccc      2280
     tcgcggtggc tcatacgcac aatcagactc ggttacgcga ttcagttcgc gaaacggccc      2340
     cccaagttta cgggcgtgta tttctccagg gtcaaccccc tgtccgcccc tgtcttgcga      2400
     gaggagattg ctgccctcct ggcgaagggt gcaatcgagc cggttcctcc agccgagatg      2460
     gagagtgggt tttacagccc atacttcatc gtacccaaaa agagcggtgg gtcacggcca      2520
     atcctagatc tgcgcgtttt gaaccgctgt ctgcacaagc tgccgttcag aatgctcacg      2580
     cagaggcgca ttctccaatg cgttcgtcct cgggattggt ttgcagccat agacctgaag      2640
     gacgcgtatt tccatgtctc cattcttcca cgccaccgcc aatttctgcg gtttgcgttc      2700
     gagggtcgag cgtggcagta caaggtcctc cccttcgggc tctctctgtc tccgcgggtc      2760
     ttcaccaaac tcgcggaggg tgccctagcg ccccttcggc tcgcgggcat tcgcatactc      2820
     agttatctcg acgactggct gattttagcc cactcgcggg agcaattgat tatgcacagg      2880
     gacgaggtgc ttcggcatct ccgcctactg gggcttcagg tcaaccgaga aaagagcaaa      2940
     ctcgcccccg tgcagaggat ttcttttctc gggatggagc tggactcgat caccatggta      3000
     gcgcacctct ccgaggaacg cgctcgcctg ttgctgaact gtctgaggga gctcgacagc      3060
     aaactagtgg tcccactgaa gttctttcag aggctcctgg ggcatatggc atccgcagcc      3120
     gccgtcacgc cgctcgggtt gctccatatg agaccacttc agcactggct tcacgatcgg      3180
     gtccccagac gcgcatggca cgcgggcaca caccgggtct cggttactgc gctgtgtcgc      3240
     cgcgccctca gcccttggaa cgacccctcg ttcctacagg ccggtgtgcc tctaggacag      3300
     gcgtccagcc atgttgttgt ttcaacagac gcttccaaca cgggttgggg ggccgtgtgt      3360
     cgcgggcatg cggctgcggg cctctggaag ggtgcccagc tgcattggca tatcaatcgc      3420
     ctagagctgt tggcagtgtt cctcgctctc caccgctttt taccggtgct ggagcggcaa      3480
     cacgtgctgg tcaggacgga cagtacggcg gcggcggcgt atatcaaccg catggggggt      3540
     atgcgctctc gccgcatgtc tcagctcgcc cgccgtctgc tcctctggag tcacccgcgg      3600
     ctgaaatcgc tgcgcgccat tcacgtccca ggcacgctca atcgtgcagc cgatgcgctc      3660
     tcacgacagc tgttacgccc tggagaatgg agactccacc ccgagtctgt tcagctgata      3720
     tgggcgcgat tcggggaggc ccagatcgat ctgtttgctt cccccgagaa cgctcactgc      3780
     cagttgtttt tttccctgac cgagggctct ctcggcacgg atgcactggc ccacagctgg      3840
     cctcggggca tgcgcaagta tgcgtttccc ccagtgagcc tgctcgcgca gtttctgtgc      3900
     aaggtcaggg aggacgagga acaggttctg ctagttgcgc ccctttggcc caaccggacc      3960
     tggatatcag agctctcact cctcgcgacg gccctcccct ggcggatccc tttgagagag      4020
     gacctactct ctcagggaca gggcaccatc tggcaccctc gccccgatct ttggaacctc      4080
     cacgtgtggt ccctagacgc gaggaagact taggtaacct accgactgcg gtggttaata      4140
     ccatcactca ggctagagcc ccctccacga ggcgcgccta cgccctgaag tggagtctat      4200
     tcactgaatg gtgcgtctct cgcagagaag acccccgaaa ttgccagatt agtgttgtgc      4260
     tctctttcct tcaagagaag ttggacagca ggctgtcgcc ctccactctc aaggtttacg      4320
     tggccgccat ctccgcttat catagcgcgg tagctggcgg caccgtggga aagcataacc      4380
     tggtcatcca gttccttagg ggtgctaggc gaattaatcc atctcgcccc cctctcatgc      4440
     cctcttggga tctcgccctc gttctcacga gtctgcgatc cgatcccttt gagccactcg      4500
     aatcagtatc tctaagattt ctgtccctga agacagctct gctggttgcg ttggcctcca      4560
     tcaagagggt cggggacctg gaggcatttt cggtcagtga ctcgtgcctg gaattcgggc      4620
     cggattactc tcacgttatc ctgagacccc gccccggtta tgtgcccaag gttcctacca      4680
     ccccctttag agatcaggta gtgaacctgc aagcgctgcc cccggaggag gcagacccag      4740
     ccctttcttt actttgtcca gttcgcgctc tgcgcattta tgtggaccgt actcagaatt      4800
     ttagatcatc tgagcagctc tttgtctgtt atggcggtcg gcagcaggga agtgccgtat      4860
     cgaaacaaag attatcccac tggattgtgg atgccatttc actcgcttat tcgagtcgag      4920
     gtcagccgtg tcccccggga gtacgtgcac actccactcg gagcgttgca tcctcttggg      4980
     cgcgtgcacg cggcgcctct ctaacagaca tctgtagagc tgcgggctgg gcgacaccca      5040
     acacatttgc aaggttttac aatctgcgag tggagccggt ttcctcaagg gtattaggta      5100
     accctttggt gattgaggag acaactcggt agggtgttga aacacgcttg ctgcgccatt      5160
     ctccctaaca cggaggtacg tgcgcctttt ttatctgtca gtaaagttcc ccgtcaggtg      5220
     agccctgcag attcctccgt ggcccccagc actgactcag cggaggagtc acttgctggc      5280
     ccactacgtt gtaggtctgc ccgctggtca gcccgcgttt tgggtatagg tgcctgctat      5340
     gcgtgatccc cactaggcga tcccatatgc ttattccgcc acggttaagt cccccccctg      5400
     ggcggacccg tgtcttccct ctccgctaac cactcttttg ctatgcgtac tccccctttt      5460
     tagggctagt ccataggtaa attctgccat ctatcccccc cttgggtaac ggatggcctc      5520
     cgcagcgtcc tccctatcgg gattgcacgc ttcccaacgt actgtcgtat ttcctagaat      5580
     tatctagatg ctcacgactt cccaaaaaat atatctaaat ccgtaaaact tctgttgaag      5640
     taggataaat tagggccagg gacacgttgg aggaccgcgc cccccatgat gtgggtgcgt      5700
     cacgcttgct tgactatctc ctcatcgggg gtgttggtaa ggtgcagtca ttatggcgct      5760
     ttccatattc tcccattcat ggcactgaag ttccccaacc gaaggggaac gttcgaggtt      5820
     acagaagtaa cccttcgttc cccgaggagg ggaacggaag tgccatattc cgtcgccata      5880
     atgactgtcc cttagctgtt tgaaagtctc ttcagcttaa aaggatggcg tctgctggct      5940
     tcaggtgtgc ttatatgctg agataattgc agatgtcgca cacctgcgca agcttacgct      6000
     gccaattaat ttcattcatt ggcccgttca atactctcca gataagcggc ttctgatccg      6060
     aatcctccca ttcatggcac ttccgttccc ctcctcgggg aacgaagggt tacttctgta      6120
     acctcgaacg tt                                                          6132
//
ID   DIRS1_DR    repbase;    DNA;    ZEB; 6132 BP.
XX
AC   .
XX
DT   11-FEB-2002 (Rel. 7.01, Created)
DT   19-MAY-2005 (Rel. 7.01, Last updated, Version 2)
XX
DE   DIRS1_DR is a DIRS-like LTR retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   DIRS superfamily; DIRS1; DIRS1_DR; endogenous retrovirus;
KW   phage integrase; reverse transcriptase RNase H.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   414-5132
RA   Jekosch K.;
RT   "DIRSDR1: putative non-LTR retrotransposon.";
RL   Repbase Reports 2(2), 9-9 (2002).
XX
RN   [2]
RP   1-6132
RA   Kapitonov V.V., Jurka J.;
RT   "DIRS1_DR, a family of DIRS-like endogenous retroviruses in
RT   zebrafish.";
RL   Repbase Reports 3(1), 1-1 (2003).
XX
CC   [2] (Consensus)
XX
CC   DIRS1_DR is a family of DIRS1-like retrotransposons. These
CC   elements
CC   are related to gypsy-like LTR retrotransposons and endogenous
CC   retroviruses.
CC   There are ~100 copies of DIRS1a_DR in the genome, they are ~0.3%
CC   divergent from the consensus sequence. Therefore, this family
CC   retrotransposed in the zebrafish genome very recently.
CC   The unusual structure of DIRS1_DR is depicted in the next figure.
CC   GTTCCCCTTCGGTTGGGGAACTTCAGTGCCATGAATGGGAGGATTCGGATCAGAAGCCGCTTATCTGGAG
CC   <====== ======> <---------------------------------------------
CC   AGTATTGAACGGGCCAATGAATGAAATTAATTGGCAGCGTAAGCTTGCGCAGGTGTGCGACATCTGCAAT
CC   ----------------------------------------------------------------------
CC   TATCTCAGCATATAAGCACACCTGAAGCCAGCAGACGCCATCCTTTTCGCTTCAGATCCTTTCTGAGTGA
CC   -----------------------------------------------
CC   ......................................................................
CC   ......................................................................
CC   GGTGCAGTCATTATGGCGCTTTCCATATTCTCCCATTCATGGCACTGAAGTTCCCCAACCGAAGGGGAAC
CC   <====== ======>
CC   <~~
CC   GTTCGAGGTTACAGAAGTAACCCTTCGTTCCCCGAGGAGGGGAACGGAAGTGCCATATTCCGTCGCCATA
CC   ~~~~~~~~~~~~~~~~~~~~~~~~~~<====== ======>
CC   ATGACTGTCCCTTAGCTGTTTGAAAGTCTCTTCAGCTT
CC   AAAAGGATGGCGTCTGCTGGCTTCAGGTGTGCTTATATGCTGAGATAATTGCAGATGTCGCACACCTGCG
CC   ----------------------------------------------------------------------
CC   CAAGCTTACGCTGCCAATTAATTTCATTCATTGGCCCGTTCAATACTCTCCAGATAAGCGGCTTCTGATC
CC   ----------------------------------------------------------------------
CC   CGAATCCTCCCATTCATGGCACTTCCGTTCCCCTCCTCGGGGAACgaagggttacttctgtaacctcgaacgtt
CC   ----------------------> <======
CC   ======>~~~~~~~~~~~~~~~~~~~~~~~~~~~~>
CC   Fig.1 Termini of DIRS1_DR. The 163-bp sub-terminal inverted
CC   repeats are
CC   underlined by a single line.
CC   DIRS1_DR encodes three ORFs. ORF1 (positions 414-1632) codes for
CC   the
CC   gag-like protein. ORF2 (positions 1633-2597) codes for reverse
CC   transcriptase and RNase H. ORF3 (positions 2598-5129) codes for
CC   the
CC   phage integrase.
XX
FH   Key           Location/Qualifiers
FT   CDS           1633..4110
FT                 /product="ORF2p"
FT                 /note="reverse transcriptase"
FT                 /translation="MRWAMSSIGVAVSPLRPPSHPPPLFLAEGARQRVLPR
FT                 PRLRLRPSGRGVHLESRQPLLPRAPLSPVNGPRSVPETGHPEKRKLALSPL
FT                 EGGAPITTVLFSATKTSVKEHFFPSPDVTARVLPVRDALPSGSQTLRASPV
FT                 AHERWGDGLPSLSPPAPSPESGCGARANRSPPAFPRDPRASRISTPTPRCP
FT                 TAGTSAIVAMTPLARALPAWLARASPSRWLIRTIRLGYAIQFAKRPPKFTG
FT                 VYFSRVNPLSAPVLREEIAALLAKGAIEPVPPAEMESGFYSPYFIVPKKSG
FT                 GSRPILDLRVLNRCLHKLPFRMLTQRRILQCVRPRDWFAAIDLKDAYFHVS
FT                 ILPRHRQFLRFAFEGRAWQYKVLPFGLSLSPRVFTKLAEGALAPLRLAGIR
FT                 ILSYLDDWLILAHSREQLIMHRDEVLRHLRLLGLQVNREKSKLAPVQRISF
FT                 LGMELDSITMVAHLSEERARLLLNCLRELDSKLVVPLKFFQRLLGHMASAA
FT                 AVTPLGLLHMRPLQHWLHDRVPRRAWHAGTHRVSVTALCRRALSPWNDPSF
FT                 LQAGVPLGQASSHVVVSTDASNTGWGAVCRGHAAAGLWKGAQLHWHINRLE
FT                 LLAVFLALHRFLPVLERQHVLVRTDSTAAAAYINRMGGMRSRRMSQLARRL
FT                 LLWSHPRLKSLRAIHVPGTLNRAADALSRQLLRPGEWRLHPESVQLIWARF
FT                 GEAQIDLFASPENAHCQLFFSLTEGSLGTDALAHSWPRGMRKYAFPPVSLL
FT                 AQFLCKVREDEEQVLLVAPLWPNRTWISELSLLATALPWRIPLREDLLSQG
FT                 QGTIWHPRPDLWNLHVWSLDARKT"
FT   CDS           2598..5129
FT                 /product="ORF3p"
FT                 /translation="MRSSSGLVCSHRPEGRVFPCLHSSTPPPISAVCVRGS
FT                 SVAVQGPPLRALSVSAGLHQTRGGCPSAPSARGHSHTQLSRRLADFSPLAG
FT                 AIDYAQGRGASASPPTGASGQPRKEQTRPRAEDFFSRDGAGLDHHGSAPLR
FT                 GTRSPVAELSEGARQQTSGPTEVLSEAPGAYGIRSRRHAARVAPYETTSAL
FT                 ASRSGPQTRMARGHTPGLGYCAVSPRPQPLERPLVPTGRCASRTGVQPCCC
FT                 FNRRFQHGLGGRVSRACGCGPLEGCPAALAYQSPRAVGSVPRSPPLFTGAG
FT                 AATRAGQDGQYGGGGVYQPHGGYALSPHVSARPPSAPLESPAAEIAARHSR
FT                 PRHAQSCSRCALTTAVTPWRMETPPRVCSADMGAIRGGPDRSVCFPRERSL
FT                 PVVFFPDRGLSRHGCTGPQLASGHAQVCVSPSEPARAVSVQGQGGRGTGSA
FT                 SCAPLAQPDLDIRALTPRDGPPLADPFERGPTLSGTGHHLAPSPRSLEPPR
FT                 VVPRREEDLGNLPTAVVNTITQARAPSTRRAYALKWSLFTEWCVSRREDPR
FT                 NCQISVVLSFLQEKLDSRLSPSTLKVYVAAISAYHSAVAGGTVGKHNLVIQ
FT                 FLRGARRINPSRPPLMPSWDLALVLTSLRSDPFEPLESVSLRFLSLKTALL
FT                 VALASIKRVGDLEAFSVSDSCLEFGPDYSHVILRPRPGYVPKVPTTPFRDQ
FT                 VVNLQALPPEEADPALSLLCPVRALRIYVDRTQNFRSSEQLFVCYGGRQQG
FT                 SAVSKQRLSHWIVDAISLAYSSRGQPCPPGVRAHSTRSVASSWARARGASL
FT                 TDICRAAGWATPNTFARFYNLRVEPVSSRVLGNPLVIEETTR"
FT   CDS           414..1850
FT                 /product="ORF1p"
FT                 /note="Gag-like protein"
FT                 /translation="MALRLCVSGCGGFLSPDDGHDHCIACLGVQHVNAVLA
FT                 GGSCRHCDAMTVAQLRSRLTFARERATPVASCSKKAAGARADLRVSAGANP
FT                 PPTGSRTSRSSRRSIQASGGESDPSNQMVALTLADTGDQMSSAASEGGLSL
FT                 SDEDPDPLAPSGQVSAVKSDPEADMLAVLSRAASAVGLEMVYPPAPRPDRL
FT                 DGCYVEDQKAKPSKPLVPFFPEVHSRLTQSWRAPFSARAASASALTALDGG
FT                 AARGYEAIPSVERAIAVNLCPRGASTWRGLPRLPSKACRLSASLGARAYKA
FT                 AGQAASALHAMATYQRYQAQALAELHEGGSNPSLLHELRTATDYALRTTKS
FT                 AACALGRTMSTLVVQERHLWLNLADMRDVDKVRFLDSPISQAGLFGDTVGE
FT                 FTQEFKAVKEQSDAMGNVIYRRGRKPAPPAEPSTSAVPRRGRPPTSAAPPP
FT                 PAPPAKRARRSPRKQAAPPAQGAVKSGKRTAKRP"
XX
SQ   Sequence 6132 BP; 1117 A; 1898 C; 1706 G; 1411 T; 0 other;
     gttccccttc ggttggggaa cttcagtgcc atgaatggga ggattcggat cagaagccgc        60
     ttatctggag agtattgaac gggccaatga atgaaattaa ttggcagcgt aagcttgcgc       120
     aggtgtgcga catctgcaat tatctcagca tataagcaca cctgaagcca gcagacgcca       180
     tccttttcgc ttcagatcct ttctgagtga gtcgatgagg gttcctcttg ctgatcagca       240
     cttcagagcg aacgagtgtg tctcccggtc cagagtgggt cttcgcggtg gcagacggtc       300
     gagctgggtt actcccttgc ctgcggttct ttgggtccgg tcctccagag cggtgcgtat       360
     agttgcaact ttcctaaaag agcaacacag tcgtgcagca cgtccttttc aggatggcgc       420
     tccgactgtg cgtttctgga tgcgggggtt tcctgtctcc ggatgatgga cacgatcact       480
     gcattgcatg tttgggggtc cagcatgtta atgcggtgct cgcgggcggt tcatgtcgtc       540
     attgcgatgc catgaccgtt gcacagctaa gatcgcggct aactttcgca agagagcgag       600
     ccaccccagt tgcctcctgt tctaaaaaag cagcgggcgc tcgggcagat ctgagggttt       660
     cagcgggagc taatccgccg cccacgggct cgcggacctc tcgctcctca cggcgctcca       720
     tccaagcttc gggtggtgag agtgatccgt ctaaccagat ggtagctctc acactcgctg       780
     acaccggaga tcagatgtcc tccgcggcat cggagggtgg gctttcactg tccgacgaag       840
     atccggaccc gctcgccccc tccgggcagg tgagcgctgt caaatcggat cctgaagcgg       900
     acatgttagc cgtgctttcc cgggctgctt cggccgtggg gttggagatg gtttatcccc       960
     cagctccgcg gccggaccga ctagatgggt gctacgtaga ggaccagaag gcgaagcctt      1020
     cgaagcctct cgtccccttc ttcccggaag tgcacagtag gctcacgcag tcctggaggg      1080
     cacctttctc tgcccgtgct gcgagtgcct ccgccctcac cgcccttgac ggcggagctg      1140
     ccagggggta tgaggcgatc ccgtcagtgg agcgcgctat cgcggtcaat ctttgtccgc      1200
     gcggcgcctc tacgtggcgg ggtttgcccc gcctcccgtc caaagcctgt aggttgtctg      1260
     cctccctcgg agccagagct tataaggctg cgggccaggc tgcttctgct ttgcacgcga      1320
     tggccaccta ccagcgctac caagcgcagg cgctggccga gctgcacgag ggcgggtcca      1380
     acccaagctt attacatgag ctgcgcaccg cgaccgacta tgctcttcgg actactaagt      1440
     ccgccgcgtg tgcgctgggg aggacgatgt ccacacttgt ggttcaggaa cgccacctct      1500
     ggctaaacct ggccgatatg cgcgacgttg acaaagttcg ctttcttgac tcgcccatat      1560
     cccaggctgg cctgttcggc gacaccgtcg gtgaattcac ccaggaattc aaggcggtga      1620
     aagagcagtc ggatgcgatg ggcaatgtca tctatcggcg tggccgtaag cccgctccgc      1680
     ccgccgagcc atccacctcc gctgttcctc gccgagggcg cccgccaacg agtgctgccc      1740
     cgcccccgcc tgcgcctccg gccaagcggg cgcggcgttc acctcgaaag caggcagccc      1800
     ctcctgccca gggcgccgtt aagtccggta aacggaccgc gaagcgtccc tgagacaggc      1860
     catccggaga agaggaaact tgctctttcc ccgctggagg gcggggcccc gataacaacg      1920
     gtacttttca gtgccaccaa aacatcagta aaagagcact ttttcccttc cccggatgtg      1980
     actgcacgag ttctgccagt ccgggacgcg ctgccttccg gctcgcagac tctacgtgct      2040
     tcgccagtgg ctcacgagcg ctggggggac ggtctccctt ccctcagccc tccagccccc      2100
     tctccggagt cagggtgcgg agccagagcg aatcgctctc ctccagcttt tccgcgggac      2160
     cctcgtgctt cccggatcag cacacccact ccgcgctgcc ccaccgctgg tacgtcagcg      2220
     attgtagcga tgactccatt agcgagggct ctgcctgcct ggttagcgcg ggccagcccc      2280
     tcgcggtggc tcatacgcac aatcagactc ggttacgcga ttcagttcgc gaaacggccc      2340
     cccaagttta cgggcgtgta tttctccagg gtcaaccccc tgtccgcccc tgtcttgcga      2400
     gaggagattg ctgccctcct ggcgaagggt gcaatcgagc cggttcctcc agccgagatg      2460
     gagagtgggt tttacagccc atacttcatc gtacccaaaa agagcggtgg gtcacggcca      2520
     atcctagatc tgcgcgtttt gaaccgctgt ctgcacaagc tgccgttcag aatgctcacg      2580
     cagaggcgca ttctccaatg cgttcgtcct cgggattggt ttgcagccat agacctgaag      2640
     gacgcgtatt tccatgtctc cattcttcca cgccaccgcc aatttctgcg gtttgcgttc      2700
     gagggtcgag cgtggcagta caaggtcctc cccttcgggc tctctctgtc tccgcgggtc      2760
     ttcaccaaac tcgcggaggg tgccctagcg ccccttcggc tcgcgggcat tcgcatactc      2820
     agttatctcg acgactggct gattttagcc cactcgcggg agcaattgat tatgcacagg      2880
     gacgaggtgc ttcggcatct ccgcctactg gggcttcagg tcaaccgaga aaagagcaaa      2940
     ctcgcccccg tgcagaggat ttcttttctc gggatggagc tggactcgat caccatggta      3000
     gcgcacctct ccgaggaacg cgctcgcctg ttgctgaact gtctgaggga gctcgacagc      3060
     aaactagtgg tcccactgaa gttctttcag aggctcctgg ggcatatggc atccgcagcc      3120
     gccgtcacgc cgctcgggtt gctccatatg agaccacttc agcactggct tcacgatcgg      3180
     gtccccagac gcgcatggca cgcgggcaca caccgggtct cggttactgc gctgtgtcgc      3240
     cgcgccctca gcccttggaa cgacccctcg ttcctacagg ccggtgtgcc tctaggacag      3300
     gcgtccagcc atgttgttgt ttcaacagac gcttccaaca cgggttgggg ggccgtgtgt      3360
     cgcgggcatg cggctgcggg cctctggaag ggtgcccagc tgcattggca tatcaatcgc      3420
     ctagagctgt tggcagtgtt cctcgctctc caccgctttt taccggtgct ggagcggcaa      3480
     cacgtgctgg tcaggacgga cagtacggcg gcggcggcgt atatcaaccg catggggggt      3540
     atgcgctctc gccgcatgtc tcagctcgcc cgccgtctgc tcctctggag tcacccgcgg      3600
     ctgaaatcgc tgcgcgccat tcacgtccca ggcacgctca atcgtgcagc cgatgcgctc      3660
     tcacgacagc tgttacgccc tggagaatgg agactccacc ccgagtctgt tcagctgata      3720
     tgggcgcgat tcggggaggc ccagatcgat ctgtttgctt cccccgagaa cgctcactgc      3780
     cagttgtttt tttccctgac cgagggctct ctcggcacgg atgcactggc ccacagctgg      3840
     cctcggggca tgcgcaagta tgcgtttccc ccagtgagcc tgctcgcgca gtttctgtgc      3900
     aaggtcaggg aggacgagga acaggttctg ctagttgcgc ccctttggcc caaccggacc      3960
     tggatatcag agctctcact cctcgcgacg gccctcccct ggcggatccc tttgagagag      4020
     gacctactct ctcagggaca gggcaccatc tggcaccctc gccccgatct ttggaacctc      4080
     cacgtgtggt ccctagacgc gaggaagact taggtaacct accgactgcg gtggttaata      4140
     ccatcactca ggctagagcc ccctccacga ggcgcgccta cgccctgaag tggagtctat      4200
     tcactgaatg gtgcgtctct cgcagagaag acccccgaaa ttgccagatt agtgttgtgc      4260
     tctctttcct tcaagagaag ttggacagca ggctgtcgcc ctccactctc aaggtttacg      4320
     tggccgccat ctccgcttat catagcgcgg tagctggcgg caccgtggga aagcataacc      4380
     tggtcatcca gttccttagg ggtgctaggc gaattaatcc atctcgcccc cctctcatgc      4440
     cctcttggga tctcgccctc gttctcacga gtctgcgatc cgatcccttt gagccactcg      4500
     aatcagtatc tctaagattt ctgtccctga agacagctct gctggttgcg ttggcctcca      4560
     tcaagagggt cggggacctg gaggcatttt cggtcagtga ctcgtgcctg gaattcgggc      4620
     cggattactc tcacgttatc ctgagacccc gccccggtta tgtgcccaag gttcctacca      4680
     ccccctttag agatcaggta gtgaacctgc aagcgctgcc cccggaggag gcagacccag      4740
     ccctttcttt actttgtcca gttcgcgctc tgcgcattta tgtggaccgt actcagaatt      4800
     ttagatcatc tgagcagctc tttgtctgtt atggcggtcg gcagcaggga agtgccgtat      4860
     cgaaacaaag attatcccac tggattgtgg atgccatttc actcgcttat tcgagtcgag      4920
     gtcagccgtg tcccccggga gtacgtgcac actccactcg gagcgttgca tcctcttggg      4980
     cgcgtgcacg cggcgcctct ctaacagaca tctgtagagc tgcgggctgg gcgacaccca      5040
     acacatttgc aaggttttac aatctgcgag tggagccggt ttcctcaagg gtattaggta      5100
     accctttggt gattgaggag acaactcggt agggtgttga aacacgcttg ctgcgccatt      5160
     ctccctaaca cggaggtacg tgcgcctttt ttatctgtca gtaaagttcc ccgtcaggtg      5220
     agccctgcag attcctccgt ggcccccagc actgactcag cggaggagtc acttgctggc      5280
     ccactacgtt gtaggtctgc ccgctggtca gcccgcgttt tgggtatagg tgcctgctat      5340
     gcgtgatccc cactaggcga tcccatatgc ttattccgcc acggttaagt cccccccctg      5400
     ggcggacccg tgtcttccct ctccgctaac cactcttttg ctatgcgtac tccccctttt      5460
     tagggctagt ccataggtaa attctgccat ctatcccccc cttgggtaac ggatggcctc      5520
     cgcagcgtcc tccctatcgg gattgcacgc ttcccaacgt actgtcgtat ttcctagaat      5580
     tatctagatg ctcacgactt cccaaaaaat atatctaaat ccgtaaaact tctgttgaag      5640
     taggataaat tagggccagg gacacgttgg aggaccgcgc cccccatgat gtgggtgcgt      5700
     cacgcttgct tgactatctc ctcatcgggg gtgttggtaa ggtgcagtca ttatggcgct      5760
     ttccatattc tcccattcat ggcactgaag ttccccaacc gaaggggaac gttcgaggtt      5820
     acagaagtaa cccttcgttc cccgaggagg ggaacggaag tgccatattc cgtcgccata      5880
     atgactgtcc cttagctgtt tgaaagtctc ttcagcttaa aaggatggcg tctgctggct      5940
     tcaggtgtgc ttatatgctg agataattgc agatgtcgca cacctgcgca agcttacgct      6000
     gccaattaat ttcattcatt ggcccgttca atactctcca gataagcggc ttctgatccg      6060
     aatcctccca ttcatggcac ttccgttccc ctcctcgggg aacgaagggt tacttctgta      6120
     acctcgaacg tt                                                          6132
//
ID   CR1DR1      repbase;    DNA;    ZEB; 3984 BP.
XX
AC   AL591176;
XX
DT   04-MAR-2002 (Rel. 4, Created)
DT   04-MAR-2002 (Rel. 4, Last updated, Version 1)
XX
DE   CR1 Danio rerio 1.
XX
KW   retrotransposon; non-LTR; CR1; CR1DR1.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-3984
RA   Jekosch K.;
RT   "CR1DR1: CR1-like repeat from Danio rerio.";
RL   Repbase Reports 2(2), 7-7 (2002).
XX
CC   [1] (Consensus)
XX
CC   Putative novel non-LTR retrotransposon similar to CR1-like
CC   retrotransposons.
CC   Contains one reading frame (pos. 1-3984) with two stops.
XX
SQ   Sequence 3984 BP; 1215 A; 949 C; 711 G; 1109 T; 0 other;
     atgccgcttc cgtctctgtc cttgtgtgca ggagaagcat cgatggaggc gttggagctg        60
     gagctggaag aagtggagtc ccagattcgc gcgctggtgg tgagaaggtc gctgctacgg       120
     gaacaacttc gtgttgtacc taatgctaag gccgtctcat cacctaaggt acgtggaaat       180
     tacaaccaca tcattccctc tacctcaacc ccgcgtcctt ctctgtccag gcccagcgca       240
     cccggggcgc ggctcagcca ggcgtcgttc acgccgacac ccggctacca cggcgcctgg       300
     gtgcagccgc gcaaggtgct tcccagatcc cggggcagaa cgtctcctcc tgtgttcgag       360
     atctccacgg agaaccgctt ctcccctctc cgcgagtcgg gtcccgatgt ggccatcatc       420
     ggtgactcga tcgttcgtca cgtccgtgcc gcctcctcaa aaggtaataa agtacgtact       480
     ttctgctttc ctggtacccg tgtgagaaat atttctacac agattccaac catcctgggc       540
     gctgccgaga gccctggtgc cgttgtcctc cacgtgggga caaacgacac cgggctccgg       600
     cagtcggaga tcctaaagaa ggacttcagg agcctgatcg agacggtacg acgcacctcg       660
     cccgccacgc agatcatcgt ttctgggccg cttcctacct accgccgagg aaatgaaagg       720
     ttcagtagac ttttagctct gaatgaatgg ctaataacat agtgtaaaga acaaaaattg       780
     ctctttgcta ataactggaa tcttttctgg gagcgtccta ggctcttccg tcctgacggc       840
     ctgcacccca gtcgagccgg agctgaactc ctgtcggaca acatctccag attacttcgc       900
     accatctgac tagcaggtaa aaattcacac tatagccacc tagactcttg ttcaccccac       960
     ttaaacatca gtaacgcata tctggcgaat cctatagaga ctgtgtctgt tcctcgtatt      1020
     attagattaa gaaataaacg tactgtgtgc tccagaaaaa atctattaag aatcaaacca      1080
     gaaaaaccag tagaaagtga aaatacaaat ttcgtaaaac ttggtctcct aaacatcagg      1140
     tcacttgcac ctaaagcact tatcattaat gaaataataa cagaaaacaa tgttaatgca      1200
     ctctgtctca ctgaaacctg gctgaaacaa aatgactata ttagcttaaa tgaagcaact      1260
     cctccaggat tcttatataa acatgaggct cgtcaaactg gtcgtggtgg tggagttcca      1320
     tcaatcttta gtgatttcct taatattaaa cagagaaacg gacttatgtt tagctccttt      1380
     gaagtattat cgcttaatgt tcagcttcca gatactatac aaaaacctat gttatctctc      1440
     gctttaatca ccatatatag acccccagga ccctatgtca aatttctaaa agaattttct      1500
     gattttattt ctgacttact agtcaaaact gataaaatgc taattgtagg tgactttaac      1560
     atccacatag atgacgctaa tgatacatta ggactcgcgt ttatggattt aatacactca      1620
     cttgggataa agcaaaacgt tgtgggccca acccatcgct taaagcatac attagatcta      1680
     attctgtctt atggaatcga ggttattgac gaagacatta taccacaaag tgatgatatt      1740
     acagatcact acctcttact atataagctg tgtttacctg aaatcagcaa acccgctcca      1800
     atactccgcc ctagtagaac tattgttccg tcaactaaag atgaatttat caataactta      1860
     cctgatcttt ctctatttcg taatgcacct gcaaactcaa atgatcttga tgtagtaacc      1920
     agcagtatgg atgccatctt tactagcaca ctaaatactg tggcacccat caaattaaaa      1980
     aaggctagag agattaaaac tataccatgg tataatagtc atactcgtgc gctcaaaaca      2040
     gcaacccgtg ccctggaacg taaatggaaa aaaacaaatt tagaggtctt tagaattgcg      2100
     tacaaagaca gtatgtccag ctataggagg gctctaaaat ctgccaggac cgagcacctg      2160
     cgcaaactga tagaaaataa tcataacaat cctagatttt tatttaacac catctctaaa      2220
     ttagctaata atcggtcatc cttggaacaa actactccac cgcaaattag tagtgatgac      2280
     ttcatgaatt ttttcagtaa taaaatagaa ggctttagac agaaaatagg agatgccaaa      2340
     ctttctgcac cggcttatac tccaaatcct gtaaatattt cattaaatca taataataac      2400
     ctacactgct tcaaaatcat agaacatgaa gagttagtaa aaattataaa tagctctaaa      2460
     ccagctacgt gtatgctgga ctcaattcca acaaaattac tgaaagagct gctacctgct      2520
     ataggagaac ctcttcttaa cattatcaac tcttctttat ctataggcca tgttccaaac      2580
     tcttacaagc tagctgttat taagcctatt attaagaaac cgcaactaga caccaacaac      2640
     ttagctaact ataggcctat ttcaaatctt ccatttatgt ctaaaatact agaaaaagtt      2700
     gtttccactc aattatgctc ttttctgcag acgaacaata tttttgaagt gtttcagtca      2760
     ggtttcaggg ctcaccacag tacagaaacc gccttagtga aaataaccaa cgatttactc      2820
     ttagctgctg accgagggtg cgtctcgcta ttagttttac tcgatcttag tgcggcattt      2880
     gataccattg accacaatat cctcataaat cgcttaaagt ctacaggtgt ccagggacag      2940
     gctctacaat ggtttaagtc atacttaact gaccgctacc aatttgtgaa tcttaatgga      3000
     cagccttcac aaatctgccc agtaaagtat ggggtgcctc aaggatcagt tttaggccct      3060
     ttactgttta caatttatat gctacctctg ggagacatta ttagaagaca tgggatcagc      3120
     tttcactgct atgcagatga tactcaatta tatatttcaa ctaaacctga cgagacgtct      3180
     gaactttcta aactaactga gtgtttcaaa gacatcaaag actggatgac cgacaatttt      3240
     cttctcttaa actcagacaa aacagaaatg ttacttattg ggcctaaatc ttgcacacag      3300
     cagatctcgc aactcaattt acaattagaa ggatacaaag ttagctttag ctctactata      3360
     aaagatttgg gtgtcatatt tgacagcaat ctaactttta aaaaccatat atcccatgtc      3420
     actaaaactg ccttctttca tctaagaaat atcgctaaat tacgaaatat gctatccatc      3480
     tcagatgcag aaaagctagt ccatgctttt atgacttcga gactggatta ctgtaatgct      3540
     ctatttgctg gctgcccagc atcctctatt aacaaacttc aattagtaca aaatgcagca      3600
     gccagagttc tgaccaggtc tagaaaatat gatcatataa ccccaatttt atcctcctta      3660
     cactggctgc ctgttaagtt tcttattgaa cttaaaatat tacttctcac ccataaagct      3720
     ctaaataatc tagctcctgt ttatctaacc aaccttctgt ctcgctacaa accaactcgc      3780
     tctttaagat ctcaaaattc agggcttctg gtagtaccta gaatagcaaa atcaagtaaa      3840
     ggaggtcgag ccttctcttt catggctcct acactctgga atagccttcc tgataacgtc      3900
     cgaggctcag acacactctc ccagttcaaa actagattaa agacctatct gtttagtaaa      3960
     gcatactctc aatgcatcac ctag                                             3984
//
ID   ERV2-I_DR   repbase;    DNA;    ZEB; 3091 BP.
XX
AC   AL591210;
XX
DT   05-JUN-2002 (Rel. 7.05, Created)
DT   05-JUN-2002 (Rel. 7.05, Last updated, Version 1)
XX
DE   ERV2-I_DR is an internal portion of the ERV2_DR endogenous
DE   retrovirus.
XX
KW   ERV2-I_DR; ERV2-LTR_DR; ERV2_DR; endogenous retrovirus;
KW   LTR retrotransposon; class I ERV; gag.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-3091
RA   Kapitonov V.V., Jurka J.;
RT   "The ERV2_DR endogenous retrovirus from zebrafish.";
RL   Repbase Reports 2(5), 13-13 (2002).
XX
DR   Genbank; AL591210; Positions   31851   28761.
XX
CC   ERV2-I_DR is an internal portion of the ERV2_DR endogenous
CC   retrovirus. It is flanked by 99% identical ERV2-LTR_DR.
CC   ERV2_DR belongs to the class I of endogenous retroviruses (4-bp
CC   TSD).
CC   It encodes ERV2p, a 455-aa gag-like protein that is closely
CC   related
CC   to this from ERV1_DR. The C-terminal portion of this protein
CC   includes
CC   the zinc knuckle motif present in gag proteins of many
CC   retroviruses.
CC   ERV2p (positions 718-2085):
CC   MFRQNTRLINTTEKGSLTTPSLSDQDFKSLLRQHMDSITESVRLNSTKKFSIDPDDVWTLDECKKVLDAC
CC   IRKNNVKVIICCYREFNLSRAKQQAQAKSELEKQIQELHAKITSLTKQLNLKKLKTDIEEVSQPDNKHPD
CC   LQIVSEKDISIQSDSDLPIGSVEVCGATRSKRTESSHNNTSVVQIQTVSRTLGPKEIDRLSQSLPSARTN
CC   FSEFSRALISKMRLYDMSLTEVTQLMSQILTESEFNSFEHTVTSKLQHASKDDLREGVLKALKNIVGPKI
CC   DWSKVTCCVQRKDESVNEFTERFCQSAITYSGLADNSDSVLDDKGPLVRIWSDGLAAEYRKALPFLNITW
CC   SSTTLRNNMNSLALWERDSYIKDRVRFEAAATKVNTEKTSNHKCLRKNICCHYCGKKGHWMRECRKNKKN
CC   FKEMNRVNQLLNSLLNALNIPLPSSLNPLSSPQRC
CC   ERV2-I_DR is 72% identical with ERV1-I_DR.
XX
SQ   Sequence 3091 BP; 1048 A; 623 C; 547 G; 873 T; 0 other;
     acttggtgcc gtgagccgga tagagactga aattatcaaa ttctcaacaa tttgctacaa        60
     aagactgaaa tctacctgaa attcaacttg aaccatcaag atcaaggaaa cttcttcaga       120
     cggaatcttc agctcaacgg caatttgaag tcactcagcg gacgtcacaa attctcaact       180
     atttgctgac tacaaccctg atgaacatta aagctacctg aatacaaaga tcagatcact       240
     ccagactgaa tcttttcagc tcaacctcga tttggtgagt ttcactctat caaaagaacc       300
     atacagacca gtctatacac atggttattc tctgctccat cagagaaaag ttaacaaaca       360
     gctgcagggt ttgtttaaca aaaagctatc ctctatttca atagagaagt aacagtttat       420
     cctctgttta gacagagaag taaagcctta cgtgctattt tcttttaaaa agttatcctc       480
     tcttcagaga agttaagcct tatgcgctat tttttttctt ttatttcgtt ttccctcttt       540
     tcaaccagag aagtttaagt ttagctatac aagctaattg atgttatctc ttgttcaggc       600
     aggaagtttt agcaacatgt gctaatattg ttaccctctg tttcgccaga gaagaaatta       660
     ctacactttc atctgaaaag ttttagtatt tttactttgt gataataagc tcacaaaatg       720
     tttagacaga atacaagact gatcaataca actgaaaaag gtagtttaac aactccttca       780
     ttgtcagatc aggatttcaa atcgctgcta cgacagcaca tggactcaat tacagagtca       840
     gtcagactaa attcgacaaa gaaatttagc attgacccag atgatgtttg gacattagat       900
     gaatgcaaga aagtgcttga tgcatgcatt cgcaaaaaca atgtaaaagt cattatctgc       960
     tgctacagag aattcaattt atctcgagct aaacaacaag ctcaagctaa atcagaatta      1020
     gaaaaacaga tccaagagct tcatgctaag ataacctcat taacaaaaca actgaaccta      1080
     aagaaattaa aaactgacat tgaggaggtt agtcagcctg ataataagca tcctgactta      1140
     caaattgtct ctgaaaaaga catttccatc cagtcagata gcgatttacc tataggctca      1200
     gtagaggttt gtggtgcaac aagatctaag agaactgaga gttcacacaa caacacttct      1260
     gttgttcaaa ttcaaacagt ttccagaaca ctaggaccta aagaaataga cagactgtct      1320
     caaagcttac catcagcacg cacaaatttt tcagagttta gcagagcact aatcagcaaa      1380
     atgcgtcttt atgacatgtc attaacagaa gtcacccagc taatgtctca aattctcact      1440
     gaatctgaat tcaacagttt tgagcatact gtgacctcta aattacaaca tgccagtaag      1500
     gatgatttga gagagggtgt tttgaaagct ctaaagaaca ttgttggccc aaagattgac      1560
     tggtcaaaag tgacttgttg tgtgcaaagg aaagatgaat ctgtgaatga attcactgag      1620
     agattttgtc aatccgccat aacttacagt ggattagctg ataattcgga cagtgtgcta      1680
     gatgataagg gacccctagt ccgcatctgg tcagatggcc ttgcagctga atacagaaaa      1740
     gctttgccat ttcttaacat cacctggtct tccaccactc tcagaaataa tatgaacagt      1800
     ttagctttgt gggaaagaga ctcttacatc aaagacagag tcagatttga agcagccgcc      1860
     actaaggtca acacagaaaa gacatcaaat cacaaatgtc ttaggaaaaa tatctgttgt      1920
     cattactgtg gtaaaaaagg acattggatg agggagtgta gaaagaataa aaagaacttt      1980
     aaagagatga acagggtaaa tcaacttctg aacagtttgc taaatgccct caacataccc      2040
     ctcccctcat cactaaatcc attgagcagt ccacaaagat gctaaccatt ttttggctgt      2100
     aagtgcttaa tgtcccagtt catttacaat taagatgaaa gactctttgt aaaaagacac      2160
     aaaggaaact tcttcctttt tattggggaa ctctgcttaa gtccacttac agccttgaat      2220
     gtgtttaaca cattttacaa tcactaccca ttcaatgtta tgatgtctga taggactgat      2280
     atttattgaa tgatagtttg tgtcacacat tttaaagttt gcccaccaca ctcagggaca      2340
     gaacaggaca cacaaaccag tgaggagccc agggcagaac tgaaagcaac aggcttcagg      2400
     ggccgcaccc tgtggtgaag actccctttt cttttttgtt tttcttcccc catcctcacc      2460
     tcactgtttt ataggtgtca taattttaag attaggagac agaaaataca caacacaata      2520
     cgatcaccaa cttagcacaa ccactataca atcacctgaa taactagaca catgaactgt      2580
     atgatcatac aagtctatgc atgaatactg ctggtctgct gtttccgtgt tttcttgtgt      2640
     gcaggtaaac acaaacactg catcttctca gaaacactct gaaccagagc atcactacgg      2700
     agatccatga atgacaggaa gtcatcagat caactctgtg ctggagaaga accacaagaa      2760
     acacacctca caaaagactg aacactattc acaagccatg gactttcaga agatctgcag      2820
     tttaactaca tgatttttgt gtcaccatgt aggatttatg acattacaac tgattgtcat      2880
     aaacgtgtga acagttttga aatctacact tacatctacg tagatattga aatgacacag      2940
     aataagttaa atgtgcctgt aacttttcaa gttacatgac tagaagatgg ggcttctgtt      3000
     atcaaacaga agccattgaa tggttttagg aaagcttaca aatttatata tttttttgtg      3060
     agagttttta aataactctc aaagggggaa c                                     3091
//
ID   HARBINGER3_DR repbase;    DNA;    ZEB; 3599 BP.
XX
AC   .
XX
DT   06-NOV-2003 (Rel. 8.1, Created)
DT   06-NOV-2003 (Rel. 8.1, Last updated, Version 1)
XX
DE   Autonomous Harbinger-like DNA transposon - a consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element;
KW   DNA-binding protein; HARBINGER3N_DR; HARBINGER3_DR;
KW   Harbinger superfamily; transposase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-3599
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGER3_DR, an autonomous Harbinger-like DNA transposon from
RT   zebrafish.";
RL   Repbase Reports 3(10), 184-184 (2003).
XX
CC   [1] (Consensus)
XX
CC   HARBINGER3_DR is an autonomous Harbinger-like DNA transposon.
CC   The consensus sequence was built based on several copies that are
CC   90% identical to each other. This transposon is characterized
CC   by the 3-bp target site duplications and 12-bp terminal
CC   inverted repeats.
CC   Protein machinery encoded by HARBINGER3_DR was involved in
CC   transpositions of HARBINGER3N_DR nonautonomous elements.
CC   HARBINGER3_DR encodes two proteins, 343-aa HARBINGER3_DR-1p (2
CC   exons,
CC   positions 368-1037 and 1119-1480) and 221-aa HARBINGER3_DR-2p
CC   (2 exons, positions 3345-2940, 1762-1503).
CC   HARBINGER3_DR-1p is a Harbinger DNA transposase.
CC   HARBINGER3_DR-2p is a DNA-binding protein that contains the
CC   myb/trihelix motif.
CC   QAVLESQQDIVRAIGDINNHLKNISNALTDISQSLKELVKK.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="HARBINGER3_DR-1p"
FT                 /translation="MAVLALLEDIVNGRIRRERVFRDHGDFLAHDDDWLIS
FT                 RFRFPRAILLDLCAELGPLLERETARSHALPVPLQVLTTLGFLATGSFQRE
FT                 LADRSGLSQSSLSRAMPAVWDGIIRMSSRYIRFPYHAVDQPNIKAQFAAIA
FT                 GFPNVIGAIDCTHIAIKAPSEDEFAYVNRKHFHSINVQIICDAQMRLTNIV
FT                 ARWPGSTHDSFILTNSMVGMRLQGGRVRDGWLLGDRGYPLKTWLLTPLNNP
FT                 QTDQERRYNDAHSHTRSVVERAIGQLKCRWRCLDKSGGVLLYRPNKVCRIV
FT                 LACGVLHNVAHRHGIPNGEPVAPPDDPDPGPVCIQPNQQAIQARQRVVAAI
FT                 "
FT   CDS           0..0
FT                 /product="HARBINGER3_DR-2p"
FT                 /translation="MAKANKKRNFTECELEVLLSEVDRRKTVLFASLSSGI
FT                 NNKRKKIEWESLADAVNAVGSERRTVSELKKKWSDVKVQVKRRTAAHRQSV
FT                 DRTGGGTGDTALTPFEERVASIVGDTLLSGVVSVSVGDTDVLEEAHEDGAG
FT                 TSTDTDFVPPEEPEPSVSGATPRVSSASASAEARPSGRVLT"
XX
SQ   Sequence 3599 BP; 1011 A; 749 C; 760 G; 1079 T; 0 other;
     gggcctcatg tatcaacgct gcgtacgcac aaaaactttg cgtacgccag gtttcacgct        60
     cagaatcgcc cacgtttgga tttactaacg atgaaatgaa cgtgggaatg tgcgcagctc       120
     cacgccagct tcttggctgg cgtacgcaca ttttttgtgc gtgtctgttt tatttccatt       180
     ggcgactcct agaggcaatt atgtcaaatt gcacactaca aagtatacca ctaacacatg       240
     tgaaaaacat tgctattaat gtataattga taaaatgggt taattgccac aatatttttg       300
     taccaattat gtgatttaga acatataaaa gcatttgcaa atgcatacaa ccctttagtc       360
     tatggcaatg gcagtgttgg ccttattaga ggacattgtc aatgggcgaa tccgaaggga       420
     acgcgttttt agagatcacg gtgattttct ggcccacgac gatgactggc ttattagccg       480
     tttcagattt ccaagagcta ttctcttgga tctctgtgct gagttgggtc cactgttgga       540
     aagagagaca gcgaggagcc atgcattacc cgttccctta caggtgctga caacgcttgg       600
     tttcctggca actggttctt tccaaaggga actggcagac cgctcggggt taagccagtc       660
     gtctttgagc cgtgcaatgc cagctgtatg ggacgggatc atccgcatgt ctagcaggta       720
     tataaggttt ccataccatg cagttgacca gccaaacatt aaagcgcaat ttgcagcgat       780
     cgccggtttt cctaatgtaa tcggagcgat cgactgcacg cacattgcta taaaggcgcc       840
     atctgaagac gaatttgcat acgtgaatcg gaaacatttc cattcaataa atgtgcaaat       900
     aatatgtgat gctcaaatgc gcttaacaaa tattgtggca aggtggcctg ggtcaaccca       960
     tgattcattt atccttacaa acagcatggt tgggatgagg ctccaaggtg gcagggtgcg      1020
     tgatgggtgg cttcttggtg agtgatgtat ttaaagatat tattccagct aagtttattt      1080
     tattttattt tgagcgtaat tatttaactg catatcagga gaccgtggtt atccattaaa      1140
     gacgtggctg ttaacccccc tcaacaaccc acaaactgac caagagcgca ggtacaatga      1200
     tgcccattct cacactcggt cagttgtaga gcgggcgatt gggcagctga aatgccggtg      1260
     gcgctgcctt gataagagcg gaggggtgct gctataccgc cctaacaaag tgtgccgcat      1320
     cgtgctggcc tgtggtgtgc tgcacaatgt tgcgcacaga catggcatac ctaatggtga      1380
     gccagtggca ccgccagatg acccagaccc aggaccagtg tgtatacaac ccaaccaaca      1440
     agccattcaa gcccgccaac gtgtggttgc ggcaatataa aaaaggtaat cagagaccaa      1500
     gtttattttt tgaccaattc ttttaatgac tggcttatgt ctgttaaagc attacttata      1560
     ttttttaggt gattattaat atcaccaatg gccctaacaa tatcctgttg tgattccaga      1620
     acagcctgcg tcaggacgcg gcctgatgga cgggcctcgg cactggcact agcactggag      1680
     acacgggggg tagcgccgga gacactgggt tctggttcct caggagggac gaagtccgtg      1740
     tcagtagacg ttcctgcacc atctaagtgt aaataaaaac aagcacgtta actgatattt      1800
     gagtccatta tttgggtaca cgcatattta taaatgaaat agatagggga gcgcggggcg      1860
     caaagtaacg cagggttaaa tgtaacaaag agttttaagg tttttgctca gggttaacca      1920
     tggcatgctt ccgaggtatt caccatagtg tctgcagatg tctacctggc aattattgaa      1980
     aaagtttgcc acaatttgga taagaaacac caatttttgc cgcataaaag tattttttat      2040
     tatagtctat ctatctatct atctatctat ctatctatct atctatctat ctatctatct      2100
     atttttttta tctgtgaaag tatgcacgta aaatcttaca ttgttgtaat taccgtcttc      2160
     taggctaaaa gattaaatta ttttgaaaga tgtaagaaac acacagtgac tgctagccag      2220
     ttttgaggaa tacatgacac agcggggtta gttgtaacag gatgttacaa ttaagccaca      2280
     cactgttgga caccaactaa actaacaaaa tattttttat tttaattttg agtgtaatta      2340
     cactttttat aataaaatgt tttttattag aaagtatttt taaatagaaa aacatttatt      2400
     gctaataatg caaataaatg caatgtataa taatggataa atggataata aggcaaatag      2460
     attcaaatgt gtttatccaa ataaataaat agactgtgct atgtagaata aaaataaatg      2520
     agccaattac tgaggaaata tggctacttt tttttaaagt aaactgaatt taaattaatc      2580
     gtatgaaatc tgccttttta agcatgtgtt acaactaacc ccccatctgt tgcaatctgg      2640
     cccacaggtg taaatggtaa cctttttact cctggcactt ttgccaatac tgcacagaaa      2700
     cgatagttcc ggcgatcata atttcagtgc tcatttgtag gagaggcttg tgtgttgttg      2760
     gtaaaaaaaa tggtttgtca aaccccatta ctttgttcat tatttgacaa aaaccaaaaa      2820
     gtgttacttt gtgccccact ctcccctaca taaattaatt gtactgctac atgtattgga      2880
     aacttaaatg caaaccggtt atttaacaaa gttaagacat aaaatgagaa gtaacttacc      2940
     ttcgtgggct tcctctaata catccgtgtc tcccacagac acggatacta ctccagacag      3000
     taaagtgtca cccacaattg aggcaactct ctcctcaaag ggtgttagtg cagtatcccc      3060
     tgttcccccg cctgttcggt ccacactttg acggtgcgcc gctgttctcc tcttaacctg      3120
     cacctttaca tcggaccatt tcttttttaa ttcactcaca gtgcgacgtt cagaccccac      3180
     tgcgttaact gcgtcagcta aactctccca ctctattttt ttccttttgt tattaattcc      3240
     ggaggacaaa cttgcaaata gcacagtttt tctccggtct acctccgata ggagcacctc      3300
     caattcacat tctgtaaagt ttctcttttt gtttgcttta gccattgctt tttcgtttgg      3360
     ttttgccaaa gtgaagtcat taccatattt ataaggggga ggaggcaggg aggggttttg      3420
     cgctcgtgca cgtgcgctca atttcacgtt aattcggatg tacaaagaga atatgcgtgg      3480
     gattcggcgt acgcagtgtt tcatacatct gaatttttta ctgcgtacgc acatttacag      3540
     ctttgtgcgt acgcaatgtt ttagtatgaa ttccacgcaa gtcttcgtac atgaggccc       3599
//
ID   TDR10       repbase;    DNA;    ZEB; 655 BP.
XX
AC   .
XX
DT   04-MAR-2002 (Rel. 4, Created)
DT   04-MAR-2002 (Rel. 4, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR10.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-655
RA   Jurka J., Drazkiewicz A.;
RT   "TDR10: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2(2), 20-20 (2002).
XX
CC   [1] (Consensus)
XX
CC   TA-target site duplication.
XX
SQ   Sequence 655 BP; 164 A; 175 C; 149 G; 155 T; 12 other;
     taagggcgta ctcacactak gyacagttgc cttgaaccgk gccgaagcac gcttgtcccc        60
     cctcccctct cccccgacgg cctgcactca cattgcattc gagcccgagc acgcttacgt       120
     catcgatgat gcgctgttca gtttaanaga agagaagcgc tctcgctcag cacagtggag       180
     attgctttag ttatattgtt ttagtcgttt gatatgcagt gacacgcagt caaatatttt       240
     gctgaacaga tcaaccactt ttgacgctca taaataatca taaaagtcct cgtgctgcag       300
     gwattaggag gtttgctgaa ggtgcagctg tcatgcagtg aggggtttgc gtctttaata       360
     awctacgaca gtttgcgttc attgaamagt aagaatgatt aataaatcca tatgaaacag       420
     tcccttaaaa gtsacgtckc gtcttcagtt tcgggctcag gcgcgctttg cactcacact       480
     acaagcgtac cgcgccaaag cccaagtgaa ccrcgctctg gcacacctct tccaaccggg       540
     ccagggccgg ccaastgaac catgcctgag cccaattcag agcactcaca cttctcaaac       600
     gaaccgggaa acgggcctgg gcacngttcg gatagcatag tgtgagtacg cccta            655
//
ID   HARBINGER2_DR repbase;    DNA;    ZEB; 3727 BP.
XX
AC   Contig:ctg25784.2;
XX
DT   08-OCT-2003 (Rel. 8.09, Created)
DT   08-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   Autonomous Harbinger-like DNA transposon.
XX
KW   Harbinger; DNA transposon; Transposable Element;
KW   DNA-binding protein; HARBINGER2N_DR; HARBINGER2_DR;
KW   Harbinger superfamily; TDR; transposase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-3727
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGER2_DR, an autonomous Harbinger-like DNA transposon from
RT   zebrafish.";
RL   Repbase Reports 3(9), 180-180 (2003).
XX
DR   Genbank; Contig:ctg25784.2; Positions   85260   81301.
XX
CC   HARBINGER2_DR is an autonomous Harbinger-like DNA transposon.
CC   It is characterized by 13-bp TIRs and the CAG target site
CC   duplication. The zebrafish genome harbors ~100 HARBINGER2N_DR
CC   nonautonomous elements derived from HARBINGER2_DR. The
CC   HARBINGER2N_DR consensus sequence is nearly identical to
CC   HARBINGER2_DR (only 4 indels, it matches positions 1-603 and
CC   3311-3727).
CC   HARBINGER2_DR encodes two proteins, the 276-aa HARBINGER2_DR-1p
CC   (2 exons, positions 642-1437 and 1558-1592) and the 368-aa
CC   HARBINGER2_DR-2p transposase (positions 2140-3246).
CC   HARBINGER2_DR-1p is similar to Myb-like proteins present
CC   in different eukaryotes.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="HARBNGER2_DR-1p"
FT                 /translation="MAETKKQRKVIFQKEEINIILEEVELQKHIIFSRFKG
FT                 SHTNKEKQKMWDDIATKLTATRGIKRSGNEVRKKWQDFSSLAKRKRALQRT
FT                 TINKTGGGPNDAPILTAEEEKALSILGTTASDGICGGIDLHGGEGLRQPEP
FT                 ESGPPCSQEQSGSPPIDRQLPSPSPPNSPTDQPPSSIVQATATTPRFENIC
FT                 GCSQDLVQLEREKLDVLKDIRQSLKEANEMNYNFQREIIELKKAKMALEER
FT                 RLSLEEMSFARPSISVPIILPDESDPGEQTTNLNQ"
FT   CDS           0..0
FT                 /product="HARBNGER2_DR-2p"
FT                 /translation="MAALQRVFQLRVRQRERQRQRQRRPRSTLCTINAFIR
FT                 QHQNPLDMLDDMAVIHRYRLPRGEIVQLLNVIGPQLMRATRRNFALSPDVQ
FT                 LLAAVRYYATGSFLQVLGDGLGLSKPSVSRAVQAVTYALLPLAAEHIKFPA
FT                 SRQAMSDIQEYFLTHYHIPQVIGVIDGTLIPISTPSVDGHTYICRKGYPAI
FT                 NCQVICDHNCLITDIVARWPGSTHDSYIFTNSSVGQEAQNSNGHWRLLGDS
FT                 GYPLRPYLFTPVANPVSNSEAHFNEAHRVARSTVERTLGRWKLRFRAIHKS
FT                 SGGLLFVPQKCCAVITVTAMLHNIAVRARVPLDIREEDEEVEEENEVEMRI
FT                 HDDQPRHVQYMAGFGARQQVIDTFF"
XX
SQ   Sequence 3727 BP; 1202 A; 697 C; 734 G; 1094 T; 0 other;
     ggctgcgttt cccgataacg ttgatcttag cacttaagag cgttttctac gagtcatttt        60
     gcgaacgttc gttattgttt cacgtgcgtt tcccaaaaat gcacttaaca caattgcacg       120
     tagcccagct ttaagtgcaa cttaggagtc gctatccgtt tgttaagtgc tgaaatgtca       180
     cgctatagaa tggctcgtta ttgttgcaca tgttatagca atccatataa ttcttcttct       240
     acttgtgtga atgtatattc aactcgaata acataaaaaa aaaatatttt tgagccagtt       300
     taaaaacata aattaactgg aaatgtcgta ctgtaaaaac actgtcttgc tccaatctcg       360
     cataaaacta attctaacag tccttgccgg aaatgacatc agcatcattt tcgatattta       420
     tatgaaacct taattaagta gaattattta tcaatttctt tatcaaaaat tgcttatctc       480
     acatcaaaat aaataaataa gtaaataaat aaataaataa ataaataagc tcttacattt       540
     atttttgaaa agtttagcct aattatcccc acctgatgtg catttgctaa taggacaaaa       600
     atataaataa gcacatacct aggggtggag acactagcaa aatggctgaa accaaaaaac       660
     aaagaaaagt catttttcaa aaagaggaaa ttaatattat tttagaggag gtggagctac       720
     aaaaacatat aattttcagc aggtttaagg gcagtcacac aaataaagaa aaacaaaaaa       780
     tgtgggacga tattgctaca aaacttactg caacaagggg gattaaaaga tcagggaatg       840
     aggtcaggaa gaagtggcag gacttttcaa gcctagctaa aagaaaaagg gcactgcaga       900
     ggacaacaat taataaaaca ggtggtgggc ctaatgacgc ccccattctt acagcagaag       960
     aagaaaaggc actgtcaatt cttggaacaa ctgcctcaga tgggatttgt ggtgggattg      1020
     acctccatgg aggagaaggg ttgcgtcaac ctgaacctga gtcaggtcca ccatgttcac      1080
     aagagcaatc aggttcacct cctattgaca gacagctacc atctcccagt cctcccaaca      1140
     gtccaacaga ccagcctcca tcttcaattg ttcaggctac agccacaaca ccgcgatttg      1200
     agaatatctg tggttgtagt caggacttgg tacagctgga gcgagagaaa ttagatgttc      1260
     taaaagatat cagacaatct cttaaagagg ccaatgagat gaattacaac tttcagaggg      1320
     aaatcattga acttaagaag gccaagatgg ctttggaaga gaggagactt tcactggagg      1380
     agatgagttt tgcaaggccc tccatttcag tgccaattat cttgccagat gagtcaggta      1440
     agattgttca atgttgttta atcatgaata attatatgtt ttaataaaat atgttgtgca      1500
     acatgaaata ttcttttcca tatgtacact catcacattt tgccatgtct tttgcagatc      1560
     ctggggaaca aactacaaac ttgaatcaat aaaaattgtt taaatgcaat gttttgatgt      1620
     ttgttaatcc actcaaagtc taaggctcaa tgaaatacta taaagcagaa gaattcttat      1680
     tatattatca tatcataagt gtttcaaatt taaatatata cttgtagtct ctttaaaaaa      1740
     agtaataagc atgcaagtcc tatatatttt actacagctc gagtcttgat gtgtgtggca      1800
     atatagtatt agggcctatc tattagccta tccatatagg tgcagaaaaa ttcttaatgt      1860
     gcacattctt tattagcact gttttatata aatgtaaatc tttgaccatt atgaacctaa      1920
     caagagaata aattcaggga agaggtaatt aatgcaattt ctaaaatcaa tgattcagtt      1980
     tcttcaagtg gggcctactg caattagtga aatagatgac aatcagtgtg tgacatgtga      2040
     atattatcac agcctgaaaa actttaatca tatggttcct gtgagcaatt ttaggatagt      2100
     atataaagtt cacacttcag tagtcttgca gagtaaatca tggctgcact acagcgagtt      2160
     ttccagctga gagtgaggca aagagaaagg caaagacaaa gacagagacg accacggagt      2220
     acactatgta ctataaatgc cttcatcagg cagcatcaaa atcctctgga tatgcttgat      2280
     gatatggctg tcattcacag gtaccgtctg ccacgaggag aaatagtcca gctgctcaat      2340
     gtcattgggc ctcagctgat gcgtgctaca agaaggaatt ttgccttgtc ccctgatgtg      2400
     caactcttag ctgctgtgag atattatgca acaggcagtt ttcttcaggt acttggagat      2460
     ggacttggac taagtaaacc atctgtgtcc agagctgtac aagcagtcac ctatgcactg      2520
     cttccacttg cagctgaaca catcaaattt ccagcatcaa gacaggccat gtcagacatt      2580
     caggagtatt ttctaacaca ttaccatata ccacaagtca ttggagtcat tgatggtact      2640
     ttaattccca tcagtacgcc ttctgtggat ggccatacat atatatgccg caaaggttat      2700
     ccagcaatca actgccaagt gatctgtgac cataactgtt taatcacaga cattgttgca      2760
     aggtggcctg ggagcacaca tgactcctat atctttacca actcatctgt gggtcaagag      2820
     gcccaaaact caaacggaca ttggaggctg cttggtgaca gcggatatcc attgaggcca      2880
     tatctgttca cccctgttgc taatcctgtc agtaacagtg aggcacattt caacgaggct      2940
     caccgtgttg cccgaagtac tgtggagcgc actttaggaa ggtggaagct acgctttcgg      3000
     gctattcaca agtccagtgg tggtcttctc tttgtgccac aaaagtgctg tgctgtaata      3060
     acagtaacag ctatgttgca caacattgca gtgagggcaa gagtgccctt ggacatcagg      3120
     gaggaagatg aagaggtgga ggaagagaat gaagttgaga tgagaattca tgatgatcag      3180
     ccaagacatg ttcaatacat ggctgggttt ggggcacgcc agcaagtcat tgacacattt      3240
     ttttgagttc ctcctttatt tgtgtcatct ttaaatcaca ttaaatattt tctgttaaat      3300
     acaacatatg tagcctacta ccctcgaaat gtccatatac aacagtgtaa tttttttttt      3360
     cattctaaca tttattatgt aatttttatt tttttcttta ttcattatta tttgtatatt      3420
     gaattgtgta atgtgtagaa aatataaatg aatagagata tacgtacaaa taaaatgaat      3480
     aatgactttg aagagaagta aattgtaggt gcaatttgcc ggttgtccag caggtgccct      3540
     cataactctg tctccttacg atgcacttaa ggctttacga ttactccaga gcactcgtag      3600
     tccactaaga ttttcaagtg ctacttaagt tacgatgctt ttgggaaaca gaccgtaata      3660
     ttaagatcag tcgtacgatc atttctacga acttcttagg cttacgatgc ttttgggaaa      3720
     cgcagcc                                                                3727
//
ID   Gypsy-26-I_DR repbase;    DNA;    ZEB; 4616 BP.
XX
AC   .
XX
DT   11-FEB-2005 (Rel. 10.01, Created)
DT   11-FEB-2005 (Rel. 10.01, Last updated, Version 1)
XX
DE   An internal portion of the Gypsy-26_DR LTR retrotransposon - a
DE   consensus sequence.
XX
KW   GYPSY superfamily; Gypsy-26-I_DR; Gypsy-26-LTR_DR; Gypsy-26_DR;
KW   LTR retrotransposon; endogenous retrovirus; gag; integrase;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-4616
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-26_DR, a family of LTR retrotransposons from zebrafish.";
RL   Repbase Reports 5(1), 25-25 (2005).
XX
CC   [1] (Consensus)
XX
CC   Gypsy-26-I_DR is an internal portion of the Gypsy-26_DR LTR
CC   retrotransposon that belongs to the Gypsy superfamily. Its
CC   long terminal repeat is deposited in Repbase as
CC   Gypsy-26-LTR_DR. Gypsy-26_DR is characterized by 4-bp target
CC   site duplications. The internal portion encodes one
CC   polyprotein: the 1503-aa Gypsy-26_DR1p (pos. 64-4572) composed
CC   of the gag, protease, reverse transcriptase, and integrase
CC   domains. The consensus sequence was built from 4 copies less
CC   than 1% diverged from the consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy-26_DR1p"
FT                 /translation="MAALAKETEGDDSLLPDYSSEPFTTHREPIQDLIHSL
FT                 ASLYLENEPEIGEQEEGDFDDSLLPPPPPTIEDDDSLLTMIMATRMHKVES
FT                 RVEAFENSSDVCFKDIQHQLNEQSNRIAVIESQVQHMLKQYQDHPIDVQQL
FT                 ENSLSTMLKKECTQVKDTLETKVQELGQAIMDCLKRRDGQLKSLIQPSGGA
FT                 TSTPHFSHTILDHGSCRPVHFKTPIKLEFPKFGSLDGEDPITYLERCDEYL
FT                 AVQPLNDSEIISMLPSVLTHTAKDWWVAEKKRVRTWTQFKSVFLQSFLADD
FT                 HDVEVERRIRERKQGVDESIRTFAYQYRALCLRLKPSMTEREILQAALRNC
FT                 NPRIASILRGTVTTVDELVRVGTLIEKDINEERSFWRQRHQEANAKSTEGN
FT                 KFFKGRQSNPHIAVCSDSSERSPVTLTLPLTIKGHQYQAILDTGSTYSLIQ
FT                 ESCWKRLKSNHEVLQSSRGQSFSLANGCVQSALGKIAWQATIHGHDYPIRA
FT                 YVMKDCDLAFPVLLGLEFLKMSGITVDFRNSSYSLPEEYGVIHSFTSSSPS
FT                 PIVSLHLALPLIPTPSTDLTIIKELVDRADVSKAHRRQLEGLMLDWPTVCT
FT                 ETLGQTNLIHHQIHTIDEIPVRKKAYPVPVNKQKFIDEEIARMLDKGIIRP
FT                 SVSPWASPVVLVPKKDGSTRFCVDYRALNSKTPLDGFPMPQIQDILESLYG
FT                 ATIFSTLDLKSGYWQVKMDEDSIKKTAFVTKNAQYEFLRLPFGLRNAAATF
FT                 QRLMNNVLRDYMGEFCFVYLDDIVVYSKTIQDHFQHLKLLFAKLQDSGLTL
FT                 NLKKCSMLQRTITYLGHVVSEEGVRTEDTKIKAVQDFPVPKNLKEVQRFLG
FT                 LASWYHRFISHFSERAAPLYALKGKNAIWNWTVECQSAFDDLKYALQRAPV
FT                 LMPPDFTKVFRVQTDASDIGLGAVLTQDFDGAEHVIAYASRLLHGAEKSYS
FT                 TAEKECLAVVWAVEKWRQYLEGRNFEVLTDHSALTWVFNNPKPSSRLTRWA
FT                 LRLQCFSFLVKYRKGSCNVVPDALSRGIPGQEVVGHIAICQANKTDPNLPV
FT                 SWDEIGKAQKLDSSLQALWEAAKQATTDSSRIAYCVQNDYLFRRVPNKDQG
FT                 CVYQLVIPASLREQFLHFAHSNPLSGHLGRMKTLKRLLDSVYWPEIRKDVW
FT                 SFCTQCKTCQIYKPRISKLSGLLQSTPVVEPGYMLGVDLMGPFPKSNRSNE
FT                 FLLVFVDYCSKWVELFALRSAKTHLITNILTKEMFTRWGTPAYLVSDRGPQ
FT                 FTAQLLNETCKRWGVVQKLSTAYHPQTNLTERINRTLKTMLSSYVHDNHRD
FT                 WDKWIPEFRYAINSAWQESTGFTPAEVALGRKLKGPLDRLIQRPPNPDHLA
FT                 YNTLERQKAFLEQVIAKTSQAQERQGKYYNQRRKPKSFEEGDLVWILTHPL
FT                 SRAADSFMAKLAPKWQGPGKIVKKVNNVNYRVVMLDKPSQCDTYHVEKLKE
FT                 FYGTV"
XX
SQ   Sequence 4616 BP; 1402 A; 951 C; 986 G; 1277 T; 0 other;
     tatttggcgc ccgaacaaaa gacaaaattt gattgaattc ttgagagata cattctgctt        60
     tctttgagtc atgtttttgt taatgtgtct atgaggccat aatttcaaaa gtcctaacat       120
     tacactctat ttcagcattc taaagttgac attatttgaa gagctttagt agcttcaaaa       180
     tggctgcctt ggctaaagag acagagggtg atgattcttt gttacctgat tattcttcag       240
     agcctttcac tacacatcga gagcctattc aagaccttat tcattctctc gctagcttgt       300
     acttggaaaa tgaacctgaa attggtgaac aagaagaagg ggattttgat gattctttgt       360
     tacctcctcc acctcctaca attgaagatg atgatagctt gttaacaatg attatggcca       420
     cacgaatgca taaagttgaa agtagagttg aagcatttga aaattcctct gatgtttgtt       480
     tcaaagacat tcagcatcag ctgaatgaac aaagtaatag gattgctgtc attgagagtc       540
     aggtccagca catgctaaaa cagtaccaag atcaccccat agatgtacaa cagctcgaga       600
     attcgttatc taccatgtta aagaaggagt gtacccaagt gaaagatact ttagaaacaa       660
     aggttcaaga gttggggcaa gcaattatgg attgcctgaa acggagagat ggacaattga       720
     aatcattaat ccagccttct gggggtgcaa cgtctactcc acacttcagc cacaccatat       780
     tagaccatgg atcttgtcgt cctgtacatt ttaagactcc tatcaagcta gagtttccaa       840
     aatttgggag tttagatggg gaagacccta ttacatacct ggaacgatgt gatgaatatc       900
     tggctgtaca acctttaaat gactctgaga tcatatccat gcttccttct gtattgacac       960
     acacagctaa agactggtgg gtagccgaga agaagagggt aagaacatgg acacaattca      1020
     agtctgtttt tcttcaatct ttcttagcag atgatcatga tgttgaagtg gaaagaagga      1080
     tcagagaaag gaaacaaggg gttgatgaaa gtattcgaac atttgcctac cagtacagag      1140
     cattatgtct gagactgaaa ccttccatga cagagcgtga gattctccaa gcagcactac      1200
     ggaactgtaa cccaagaata gcaagcattt taagaggtac tgtaactact gtagatgagt      1260
     tggtacgtgt aggaacactt atagaaaaag atatcaatga agaaagatca ttttggagac      1320
     agaggcacca agaagctaat gcaaagtcca ctgagggtaa taaatttttt aagggccgac      1380
     agtcgaaccc tcacatagct gtatgttctg atagcagtga aagatctcct gtcacattaa      1440
     cattgccctt aaccattaaa ggtcatcaat atcaagcaat tctggatact gggagcactt      1500
     actctttaat tcaagagtcc tgctggaaac gactaaagtc aaatcatgaa gttttgcaat      1560
     cgagtagagg acagtccttt tctcttgcaa atggatgtgt acaatcagcc ttggggaaga      1620
     tagcttggca ggctaccatc cacggacatg actatcctat cagagcatat gtaatgaaag      1680
     attgtgactt ggcttttcct gttttgttgg gcctggaatt tttgaagatg tctggaatca      1740
     cagtcgattt tagaaattct tcctattctt tacctgaaga atatggggta atccactcct      1800
     tcacctcttc ctccccttca ccaatagtaa gtctgcacct tgcactacct ctaataccaa      1860
     caccttctac tgatctaacc attataaagg agttagtgga tcgagctgat gtctctaaag      1920
     cccatagacg tcaactagaa ggactgatgc ttgattggcc cactgtatgc actgaaactt      1980
     taggtcaaac caacttgatt catcatcaaa tccatacaat tgatgaaatt cctgtgcgaa      2040
     agaaggccta tcctgttcca gtcaacaaac agaagtttat agatgaggaa atagcaagaa      2100
     tgcttgacaa aggcattata agaccttctg tatctccatg ggcatcacca gttgtacttg      2160
     tgcctaaaaa agatggcagt acccgctttt gtgttgatta tagagctttg aactccaaga      2220
     ctcctcttga tgggtttcca atgcctcaaa ttcaggatat ccttgagtcc ttgtatggag      2280
     caaccatatt tagcacatta gacctcaaat ctggctactg gcaggtaaaa atggatgaag      2340
     acagcatcaa aaagactgct tttgtcacca aaaatgccca atatgagttt cttcgtcttc      2400
     cttttggcct gcgaaatgct gctgcaacct ttcagaggct catgaacaat gttctgagag      2460
     actacatggg agagttttgc tttgtctatc ttgacgacat tgtggtttac tcaaaaacca      2520
     tccaagatca ctttcaacat ctcaagctac tctttgcaaa attgcaagac tctggtttaa      2580
     cactcaatct caagaaatgt tctatgttgc agaggaccat tacttaccta ggacatgttg      2640
     tttctgagga aggagtacgg actgaagaca ctaaaatcaa agcagttcag gattttcctg      2700
     tcccaaaaaa tctcaaagag gtacagagat ttttaggtct tgctagttgg taccatcggt      2760
     tcatttctca cttctcagag cgagctgctc cattgtatgc actgaaaggt aagaatgcaa      2820
     tctggaactg gacagttgaa tgtcaaagtg cctttgatga tctcaaatat gcactacaac      2880
     gagcaccagt attaatgccc ccggatttca ccaaagtctt tagagtgcag actgacgcca      2940
     gtgacatagg actaggagct gtattgacac aggattttga tggtgcagaa cacgtcattg      3000
     cctatgcttc acgtctttta catggagcag aaaaatcata ctccactgca gagaaggaat      3060
     gtcttgcggt cgtgtgggct gtagagaagt ggaggcagta tttggaagga cgaaactttg      3120
     aagtactgac ggatcattct gcgctgactt gggttttcaa taaccctaaa ccatcttcac      3180
     gcttaaccag atgggcatta cgactacaat gtttcagttt cctggtcaag taccgtaagg      3240
     ggtcctgcaa tgtggtacct gatgccctat ccagaggtat accagggcaa gaggttgtag      3300
     gtcatattgc catctgccag gctaacaaga ctgatcctaa tttgccagtc agctgggatg      3360
     aaattgggaa agctcagaag cttgattctt ctttgcaagc tctatgggaa gcagctaagc      3420
     aagccaccac agattccagc cgcattgctt attgtgtaca gaatgactac ctctttcgca      3480
     gggtgcctaa caaagatcaa gggtgtgttt accaactagt catccctgca tcactgagag      3540
     aacagttttt acacttcgcc cattcaaatc cactgagtgg acacttagga aggatgaaaa      3600
     ccttgaagag attacttgac agtgtctatt ggcctgaaat ccgtaaggat gtttggagct      3660
     tttgcaccca gtgtaagact tgtcaaatat ataaaccgag aatctcgaaa ctgtctggat      3720
     tgttgcagtc aacacccgta gtagagcctg gctatatgct gggagtggat ctaatgggtc      3780
     ctttcccaaa aagtaatcga tcgaatgaat tcttattagt ctttgtggat tattgcagca      3840
     agtgggtgga actttttgct ttaagatctg caaaaactca cctcataact aacatcttga      3900
     caaaagagat gttcactcga tggggaactc cagcatatct cgtctctgac cgcggccctc      3960
     aatttacagc ccaattgctc aatgagacct gcaagcgatg gggagtagtt cagaagctca      4020
     gtactgccta tcatccgcag accaacttaa ctgagaggat aaaccgaacc ctaaaaacaa      4080
     tgttgtcctc ttatgtccat gacaatcacc gtgactggga taaatggatc cctgagttca      4140
     ggtatgccat taactcagca tggcaggaaa gtacgggttt cactccagct gaagttgctt      4200
     tgggacgtaa gttgaagggt cctctagaca ggctgatcca gagaccacct aatccagacc      4260
     atctagcata taacaccctt gaaaggcaga aagctttcct tgagcaagtg attgcaaaga      4320
     ccagccaagc acaagagaga caaggaaaat actacaatca acgtagaaaa ccaaagtcct      4380
     ttgaggaagg agatttggtt tggatcctca cacaccctct gtctcgagct gcagattcct      4440
     ttatggccaa attagctccg aaatggcaag gtcctggcaa aattgtaaaa aaggtaaata      4500
     atgtcaacta cagagtggta atgcttgata aacccagtca atgtgatact taccatgtgg      4560
     aaaagttgaa ggaattttat ggaactgtat aactcttttc tttaggggaa ggggtg          4616
//
ID   L1-1_DR     repbase;    DNA;    ZEB; 5811 BP.
XX
AC   AL645691;
XX
DT   02-MAY-2002 (Rel. 7.04, Created)
DT   02-MAY-2002 (Rel. 7.04, Last updated, Version 1)
XX
DE   L1-1_DR is a non-LTR retrotransposon from the L1 clad.
XX
KW   L1 clad; L1-1_DR; Non-LTR retrotransposon; endonuclease;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-5811
RA   Kapitonov V.V., Jurka J.;
RT   "L1-1_DR, a non-LTR L1-like retrotransposon from zebrafish.";
RL   Repbase Reports 2(4), 18-18 (2002).
XX
DR   Genbank; AL645691; Positions  114238  120048.
XX
CC   This element is characterized by 12-bp target site duplications.
CC   It can be an active element. It encodes two proteins:
CC   294-aa L1-1_DR1p (positions 172-1053) and L1-1_DR2p (positions
CC   1665-5489). These proteins are most close to corresponding
CC   proteins
CC   encoded by other L1-like elements. L1-1_DR1p is a putative
CC   RNA/DNA
CC   binding protein, and L1-1_DR2p is composed of the AP endonuclease
CC   (aa positions 1-200) and reverse transcriptase domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           172..1053
FT                 /product="L1-1_DR1p"
FT                 /translation="MAGKLRKYKYTGKTAANQEDANTPSMMSEPAEHTDIL
FT                 EIKAELISSIKTEITSLFQKELKTALSNEFEMVKAELQAVKSEIASNASAV
FT                 RSDLEAIKTTVSDMERGLSSCSDDVTELQNTVRKLEKNVVTLQEKCLDMEG
FT                 RMRRSNIRILNVAEDPGACTPASVSKLLKDTLKMDKDILIDRSHRTLQAKR
FT                 ADGKPRAIVAKLHYYQDCVEILRRVRETGPLHHNGATIFIFPDYPPSVARA
FT                 RSAFNEVRKLLRGKDGVRYGILHPARLRITHNGTEKQFQDAAEALTYVKNN
FT                 IL"
XX
SQ   Sequence 5811 BP; 1884 A; 1132 C; 979 G; 1816 T; 0 other;
     gtgcccggcg ctactgagca ggcgatggag taaggtaaaa gttgggtgag ctctgcaaaa        60
     aacgtaatat aacttataaa tttaaggcgc tttaatcgaa aatatgagat gctacatcta       120
     tctaagactt tactacttca cataaagcag ctgggttctc tataaatcca aatggcgggc       180
     aaactacgta aatataagta cacggggaaa accgctgcta atcaagagga tgctaataca       240
     cctagcatga tgtccgagcc agccgaacac actgacattt tggagattaa agctgagctg       300
     atctcatcga tcaaaacgga aataacctcg ctctttcaaa aagaactgaa aactgcactg       360
     tcaaacgaat ttgaaatggt caaagctgaa ttacaagcag ttaaatccga gatagcaagc       420
     aacgcttcgg ctgttcgctc agatcttgag gcaattaaaa cgacagtgtc agacatggaa       480
     cgaggcttat ccagctgctc agacgatgtt acagaactgc aaaacaccgt gcgcaaactg       540
     gagaaaaatg tagtaaccct acaagagaaa tgcttggaca tggaagggcg aatgaggagg       600
     tcaaacatta gaatactgaa tgtagccgaa gatcctggcg catgcactcc agcctcagtg       660
     tcgaagctgc tcaaagacac cctcaaaatg gataaagata tactgatcga tagatctcat       720
     cgcactctcc aggcaaaacg tgcagatggt aaacccaggg ccattgttgc aaaattgcat       780
     tactaccagg actgtgtgga aattctacgc cgggttcgtg aaaccggacc ccttcatcat       840
     aacggcgcaa ctatattcat cttccccgac tacccgccga gcgtggcccg tgcaagatcg       900
     gcttttaacg aagtccgaaa actactacga ggaaaagatg gtgttcgtta tggcattctt       960
     cacccggcca ggctccgaat cacacacaac gggacggaaa agcagttcca agatgcagca      1020
     gaagccctga cttatgtgaa aaataatatt ctttaagacg gctcgaccgt ctctgattga      1080
     gtagtaccaa gccacttcag tgactttgtt ttttttcata cactcacact cccatctaaa      1140
     tgaccatgtt tgagtgagta tatgaacatt acatctatgc agagactgac tgaattccta      1200
     tttcatggat gaggagtgaa aaacaatatt actgatacaa aatcacttac tattttcagt      1260
     taaacttaaa agcaggaaat ataattggga cagtacaatt actgagttta ttattatcat      1320
     tactatgctg ttatgtaact gtcatccttg ttttaatagg tgattgttaa taatatgcgc      1380
     caatttaatt tattattttt taatttcatt tttgttttct ttctttaata atgtgcagag      1440
     caacttgtga ggttaaaact ccccaagtaa gcactttatg tgtggatatt gttgcgaggg      1500
     gttaaagttg caccatgttc tatttggtgt ttgggaatgg gtaaatgtcg cacttcattt      1560
     tatacttcta cttcttgttt tgttttctac aatcttattg gaagggtctt ttctgttata      1620
     tttaaacgaa gcgtttgtat gtaagcttac attttttaag acgtatggtt aaaccacaca      1680
     atgttaacgc atcaggcatt tgccaggtga atcttataag ttggaatgtt aaatctttga      1740
     atcatccagt gaaacgtgga aaggttctct cacacttaaa acagttaaat acagatatcg      1800
     ctttcctaca agaaacccac ctgaaaactt ttgatcactt tagactaaga ggaggatggg      1860
     tgggacaact ctttcactcg acttttcact ccaaatctag aggaacagca attctcatta      1920
     gtaaaacggt ttcatttgag gcatcaaaaa tcgaagctga tccagcaggc cgttatataa      1980
     tggtagtggg tagactaaat aatactccgg tagttatggt aaatgtatat gcacccaatt      2040
     gggatgacag tgcattcttt acgggtctct tctcacgaat acctaatata gatactcatc      2100
     atcttatatt aggaggagat attaattgcg tactatcacc ctcactggat cgcagctctc      2160
     tcaaaccaat gataccaagt cgtacaactc aagtgattaa ccaacttctt aaaacctatg      2220
     gaatgattga tgtttggaga ttccaaaatc ctgggtgtag aggttattca ttttattcac      2280
     cagttcataa gacatattca cgtatagatt atttttttct ggacagtgaa ctacttcctc      2340
     tagttagtga atgcaaatat aatgcaatag tgatatcaga tcatgcgcca ttattaatca      2400
     ctctagatat gccaattaca tcaaacaact atcggccatg gcgatttaat acactacttc      2460
     tctctgatgt ggagtttgtt aaatttatat catcagaaat tagagaatat ttagtgcaca      2520
     atcagactcc aggaatatct tctagtctta tttgggaatc tcttaaagcc tatcttcgag      2580
     gccaaattat atcatatagt gccagattaa agaaaaaaca acatgagcgg cttaaaaaaa      2640
     ttgaaaatga tatttttaaa cttgatgaaa ttttggcaca ctcatctaca cctgacatgt      2700
     ttagacagcg tttagctctt cagtctgaat ttaatttatt atgtacaaaa caaacagaaa      2760
     atcttttaat taagtccagg cataagatgt atgaacatgg tgaaaagata gggaagatct      2820
     tagctcacca acttcgacaa caaaatgcag cacattccat tatgtcagtt aatgataaca      2880
     ctggcactaa attgacgaat cccttagaga tcaaccatcg gtttagagaa tactattcac      2940
     aattatatac ttcggagtct tgtaaagatg agtcattatt tgattctttt tttaagaaaa      3000
     ttagtctacc cactattgat caagagttcg ctctagacat ggagaatcca ttttcaaaag      3060
     acgaatttat tagagcagtg tcatctatgc aaaacggaaa atcaccaggc ccagacggtt      3120
     ttccaagtga attctttaaa aagttctctg gcgaacttgc ccctattcta ctttccctat      3180
     atgaagaatc ctcagtcacg ggctccttgc cagagactat gaatcaagca attatttctc      3240
     taatctataa aaaagataaa aatccatcag aatgcagctc ttatcgacca atttcattgc      3300
     tgaatgttga cagtaagata ttcgccaaaa tattagcgca tcggctggaa atagtgctac      3360
     ctacaatagt ttctggtgac cagacaggct ttattaaaaa ccgatattca ttctataata      3420
     tacgcagact tctaaatatc ctccaccatc ccactccatc tgatgttccg gaagtccttc      3480
     tctcacttga tgctgagaag gcttttgatc gggtggagtg ggactacctc ttttacactc      3540
     ttaaaaaatt tggatttggc acaaagttca tttcatggat taaaatctta tactcatcac      3600
     ctatggcagc aatacgtaca aattgtcaca tttctccttt cttttcgtta gaaaggggaa      3660
     ccagacaagg ctgccctctg tcccccttat tatttgcatt ggtaattgaa cctctgtcca      3720
     ttgcgatacg aaatgatatc aatatcaagg gtatacagag ggacaacttt gaacataaaa      3780
     tttctctcta tgcagatgac accctcctat atatatctga accactaaca actctaccac      3840
     aaattatgac attactgact gcctttggga aaatatcagg ttataaaata aatatgcaaa      3900
     aaagtgagct tatgcccatt aataatgctg gtagaaagat tatttttacc tcactaccat      3960
     ttaaaataac taaagacaaa ttcaaatatt taggtatatg gatcactaat aaatacaaac      4020
     atttgtacaa agttaatttc cctccactga tagattccat aaaaaaagac cttgaacgtt      4080
     ggaatccgtt accattgtca ctgggaggta gaataaacac tataaaaatg aatatattac      4140
     ccagatgttt atatcttttt cagtgcatac ccgtattctt aacaaaatca tttttcttac      4200
     ttttagataa attaatatca tcttttatat ggaatggaaa aaatgcacgt atccgtaaaa      4260
     atattttaca acgacaccga gaccatggag gattgtcatt acccaacatt cagcagtatt      4320
     actgggcagc taatattcga gcaatgctac actggtcaaa tccatcatat gacagtggcc      4380
     ctaattggtt atctttagaa aacacatcaa atttttcaac ctctctccat gctctgctat      4440
     gctcaaattt tccgacacct gaacctttat ctaaatactc tttaaaccca gttgtcaaac      4500
     actcactcaa aatatgggca caatttagaa gaagttttgc acttaaagga ctatcagcct      4560
     atgcccccat agcaagaaat catatgttca ccccctctac tatagacaaa acttttgaca      4620
     tctggtctat gaaaggtctt aagatattaa aagatatgtt tattgatggg caatttgctt      4680
     cattccaaca agtaaaagtt aagtttcaaa ttccaaattc ccacttcttt agatacctcc      4740
     agctgcgaag ttttgtgtcc tcctcaatga gtcactatcc ctcactgcct cccccctccc      4800
     tgcttgactc tattatggag ctaagcccat actcaaaagg acttattggc aaaatatatt      4860
     ctataattaa ttcccacaat ctggaacccc tagtaaaatt aaaaagaaaa tgggaggtgg      4920
     agctagagat agaactatca gaagatatgt ggcaatccgt tttagacaat atccactcat      4980
     cttcaatttg tttaaaacat agagttatac aatttaaagt agtacataga ttacattggt      5040
     ccaaagtgaa actagccaaa tttaaaccaa atatagaccc taactgtagc attgagccag      5100
     ctactttatc tcatatgttt tgggcttgtt caaaattaaa gaaattctgg cacctaatat      5160
     tcaaattcct ctcggacgca ttaaatacct atgtagaacc tgaggccata atttcaattt      5220
     ttggaatcac accacagtcc ttatgtttta acaaaagcaa gataaatgtg attgcctttg      5280
     ctacgctttt agctagaaga ttaatattgc tgaaatggaa ggaaaaactt cctccaacct      5340
     ttaagcaatg gcttatggaa cttctacacc acctgacctt agaaaaaata cgatacactt      5400
     ttggaggctg tactgatatg ttttttctca cctggcaacc tgttttagat cacgtaaaaa      5460
     agatggaccc ctcagtcatt ttagaagagt agaacctttc cttgtttgtt tgtttgtttg      5520
     tttgtttgtt tttttttttt tttttctctt ttctcttcaa ttttttgtat tttctatttt      5580
     cttttttctc cccttattaa tgagagtaac atatgtttta cttattataa ctatttattt      5640
     gtattttttc ttaatattat ttatttattt tttttttttg aacctaaatg tatgtgcggc      5700
     aggttttgtt tgtttgttgt gtaaaaaaaa aaaaaaattg aaaagctatt ttgtaatgta      5760
     tgtttcatat ctaatatgtt caataaaaat acttttggaa aaaaaaaaaa a               5811
//
ID   hAT-2_DR    repbase;    DNA;    ZEB; 2536 BP.
XX
AC   .
XX
DT   07-DEC-2004 (Rel. 9.11, Created)
DT   07-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   hAT-2_DR is an autonomous DNA transposon - a consensus sequence.
XX
KW   hAT; DNA transposon; Transposable Element; HAT superfamily;
KW   hAT-2_DR; transposase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-2536
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-2_DR autonomous DNA transposon from zebrafish.";
RL   Repbase Reports 4(11), 305-305 (2004).
XX
CC   [1] (Consensus)
XX
CC   hAT-2_DR is an autonomous DNA transposon. This transposon is
CC   characterized by the 8-bp target site duplications and 16-bp
CC   terminal inverted repeats. The consensus encodes the 611-aa
CC   hAT transposase (pos. 255-2087). The genome contains about
CC   1000 copies of hAT-2_DR nonautonomous elements that are ~97%
CC   identical to the consensus. Nearly all these copies are
CC   nonautonomous elements. The transposase-encoding elements are
CC   present just in 2 copies.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="hAT-2_DRp"
FT                 /translation="MPANTMDRFLRPPDSKPSSSGLKPKRRRYDDQYLSLG
FT                 FTWTGPADEPRPLCVVCQDILANDSMRPAKLRRHLETKHDEVAGKPPEFFK
FT                 RKLQTLQGQKKIVEDFVKLNGKATEASYRVALRIAKAGKAHTTGETLILPA
FT                 AKDICSVMLGEAAASKIDSVPLSDNTISRRISDMAQDVKEQVLDGVRHSPF
FT                 YALQIDESTDVASCAQLLTYVRYVKNMDIHEEFLFSSPLPAHTTGEQIFNQ
FT                 LNEFVRKNDVEWERCCGICSDGAKSMTGRYSGLMSRVKEVAPNAIWTHCTI
FT                 HRQALAAKKMPNDLRSVLDEAVKIINLIKARPLNARLFHILCDELGAHYKQ
FT                 LLLHTEVRWLSRGRVLSRLLDLREEVLLFLSNVQSTLVQHMSDLSWIARLA
FT                 YLSDIFERLNALNLSLQGRDCNVFSAFEQVSSFRRKLDLWATRVEKGCLDM
FT                 FPTLADFMQEAGSVVHIQPLVAEHLRGLCQQFTHYFSNETILDEWIRNPFK
FT                 FKPAESDVLSIQDEEALIDLTSNHELQQMITHSSIEHFWLSVQNEFPELTQ
FT                 KALRKLLPFVSTYLCEPEFSALTFIKNKYRSRLQVEDDLRLFLTSLQPRIS
FT                 LLCAARKQLHTTH"
XX
SQ   Sequence 2536 BP; 746 A; 506 C; 560 G; 724 T; 0 other;
     caggggtttt caaagtgtga ggcgcgcctc ccctgggggg cgccagagca tgtcagggga        60
     ggcgcgggaa aaaatattat ataataaaaa tataattatt aagtttaatt attatatgta       120
     ttttttatta tatttaaacg ttttaattaa acaaagctaa aaaaataata cgtcaaaaat       180
     aagaaaacct tttttaccca gaaggccata gctgtgaatt cgcttctgtt tggcaagccc       240
     gccaatacag gtatatgcct gctaatacaa tggatcggtt tctgagaccc cccgattcaa       300
     agccttcaag ttcagggctt aaacccaaaa gacgacgata tgatgatcag tatttgagtt       360
     taggatttac gtggacagga ccagctgatg aaccacgacc tttatgtgtg gtttgtcaag       420
     atattttggc taatgacagc atgagacccg ctaaacttcg gcgacacctt gaaaccaagc       480
     atgatgaggt agcaggaaaa cctccagaat ttttcaagag aaaacttcaa acccttcaag       540
     gtcagaaaaa aattgtggaa gattttgtca aattaaatgg aaaggccact gaagcttcat       600
     atcgcgttgc attgcgtatt gccaaggcag gcaaagcaca taccaccggg gagacgttaa       660
     ttctgccggc agcaaaagac atttgttctg tgatgctagg agaggcagcg gcttctaaga       720
     tcgattctgt cccactctct gacaacacaa taagtcggcg catctcagat atggcacagg       780
     atgtgaagga acaagtttta gacggcgtca gacacagccc attttatgca ctccagatcg       840
     acgaatccac agatgtggcc agctgcgctc agctgttaac atatgtgcgg tacgtgaaaa       900
     acatggacat tcacgaagag tttctattta gtagtccttt gccagcccac acaacaggtg       960
     aacaaatttt taaccagctg aacgaatttg tgagaaagaa cgatgtagag tgggaacgct      1020
     gctgtggcat atgcagcgat ggggcaaaat caatgacggg ccgctacagc ggtctcatgt      1080
     cgagagttaa agaggtagct ccgaatgcca tatggaccca ctgcactatt catagacaag      1140
     ccttagctgc caagaagatg ccaaatgatc ttcggagtgt cctcgacgaa gctgtgaaaa      1200
     ttattaacct cataaaagca cgacctctaa atgctcgtct tttccacatt ttatgcgatg      1260
     aattgggagc gcattacaaa cagctgcttt tgcacaccga agtccgctgg ctgtctcggg      1320
     gcagagttct atcacgactt ttggatttgc gtgaggaagt actacttttt ctgtcaaatg      1380
     tgcaatccac tctggtgcag cacatgagtg atttgagctg gatcgcaagg ttggcttatt      1440
     tgtcggacat attcgaacgc ctcaacgcgc ttaatttatc attgcagggc agagactgca      1500
     atgtgttttc ggcatttgag caagtttcct cgttccggag aaagctggat ctatgggcca      1560
     ctcgtgtgga gaaaggatgc ttagacatgt ttcccacgct ggctgacttt atgcaagagg      1620
     cagggtcggt ggttcatatt caacctttgg tcgctgaaca cctaaggggg ctgtgtcagc      1680
     aattcacaca ctacttttcc aacgagacaa tactggatga gtggattcgc aatccattca      1740
     agttcaagcc agcagaaagt gacgtactgt ctatccaaga cgaagaggct ttgattgatc      1800
     tgactagtaa tcatgaactg cagcaaatga ttacacactc ttccattgaa catttctggc      1860
     tctccgttca aaatgaattt cctgaactta cacaaaaagc actgaggaaa cttttaccat      1920
     tcgtttcaac gtatttgtgc gaaccagaat tttctgcttt gactttcatc aagaacaaat      1980
     atcgttcacg tcttcaagtg gaggatgacc ttcgtctctt tctgacgtca ctacaaccac      2040
     gaattagtct tctctgtgca gcaaggaaac aactgcatac tacccactaa ggtaggaata      2100
     taattatgta agcatattaa tcaatagtag agatatttaa attttggcgt tgtttaaagt      2160
     tctttcccca ctctgttaca gatcatctga ctgttttgac tgggatggac agttcttgga      2220
     tctgttctat tcatattgaa ccatcatcct agttttaaaa acgttatatt aaaatacttg      2280
     ttattactct gtaaataatt gcactttcat gcaaatgatg ataaaagtga gttaacagtc      2340
     tgacatctgt ctgtgtcttt atatatactg tatatatata tatatatata tatatatata      2400
     tatatatata tatatatata tatatgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgcgtg      2460
     tttgggagga ggggggcgcc aatggataag ttgtgtcaaa agggaggccc actgtcttag      2520
     actttgaaaa accctg                                                      2536
//
ID   L1-4_DR     repbase;    DNA;    ZEB; 5548 BP.
XX
AC   AL807749;
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   18-MAY-2005 (Rel. 7.07, Last updated, Version 2)
XX
DE   L1-4_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   L1 clade; L1-4_DR; Non-LTR retrotransposon; endonuclease;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-5548
RA   Kapitonov V.V., Jurka J.;
RT   "L1-4_DR, a family of non-LTR L1-like retrotransposons from
RT   zebrafish.";
RL   Repbase Reports 2(7), 24-24 (2002).
XX
DR   Genbank; AL807749; Positions  100605   95058.
XX
CC   L1-4_DR is a family of L1-like non-LTR retrotransposon. This
CC   family was active recently (no stop codons in ORF1;
CC   a few stop-codons in ORF2).
CC   It encodes two proteins:
CC   the 459-aa L1-4_DR1p (positions 171-1547) and the 1294-aa
CC   L1-4_DR2p
CC   (positions 1577-5461, a conceptual translation).
CC   These proteins are most close to corresponding
CC   proteins encoded by other L1-like elements. L1-4_DR1p is a
CC   putative
CC   RNA/DNA binding protein, and L1-4_DR2p is composed of the
CC   AP endonuclease (aa positions 1-200) and reverse transcriptase
CC   domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           171..1547
FT                 /product="L1-4_DR1p"
FT                 /translation="MDTLVKELELKMDYGSMDKATPENNNSRDSNNGIDDN
FT                 DTWATVVARRRKTKSDTSREGSGEMQQTKGKANAEHLENSQQSSHRNEMIN
FT                 KLKSQARFQRQYKKETTLTMTVKDPENITVTMIIKAVEDKTGIGKLFGLRK
FT                 KSNFDYELTMENETDCDHLMDGLMINQQFCEVSKLCATERMVSFLNLPNYI
FT                 QDSEIIQKLVDWGVSPILPLRRRYHPGTTVADGTRFIRVKFPKEVMSLPYN
FT                 VKFDTEEGPKYFRVIHDQQIKTCRLCGSAEHEKKDCPQFVCRECLEQGHFT
FT                 RDCKAPRCQGCKKTILWCRCESDEEETGVMETNKQMEKSSNEEREEEVQEL
FT                 PPDDLNEQEEEQAMSEEDEGDTADTEAQDLMKDDGHDMEEEQGAAGENTES
FT                 RIEEEVSDDDDNEEINIGTKDRTIDSINRRRRKTVQLNIQQVLKKQKLRKE
FT                 AKAKLKTERTDLRF"
FT   CDS           0..0
FT                 /product="L1-4_DR2p"
FT                 /translation="MDCFIWIFFCLDGLFSFIFLMNNLCLVSINVRGLSSK
FT                 VKFENVIALTKKCDVICIQETGWNENIVNDLKKCWDGEILYNNDPNKKKGM
FT                 AILIRRGIGYTFDVLFKDNYGRILTIKIMNKDEEIRICNIHAPNEDLERVT
FT                 FFKDLSVLMSGWNNVIVLGDFNTVLERIDVDDHMVFRADVGRRELKHMIEK
FT                 HKYVDVWRERNRAKREYSRRQWVNTVLKQSRLDYVLCTRNVESFISNIFYK
FT                 IFSCSDHDFLYVMMDFSGVERGPGVWVFNTELLKNDFYKIEMENIIINSVN
FT                 DELYDEEISVWWDNVKLEAKRFSIECSKKMQKAKRAKERQLNKEWENEMEK
FT                 ITEGNMDIRRIVILEEKLKKLEEEKCMGARIRSKIKNTVEGERSTKFFYDL
FT                 EKTRQKADLIKNVSTKEKTVKDKESILRTVKDFYETLFKAKGVHEEDKDFL
FT                 LNQIKVKVSEEDKKLCDSDITEEEINEAITQLSNGKSPGLDGLSSEFYKTF
FT                 KDVLIPILKDLFIAIFKKGQLSESMKKGMIKIIYKNKGDKDYLQNYRPLSM
FT                 LNTDYKILAKILANRLKKVVPTLITTNQAYGVIGRDIADTVTSIRDLIWYI
FT                 KEKKDEGFLFSIDLEKAFDRVEHSYLFDIIQKFGFGENFIKWIKCFLYRDI
FT                 FSCFKINGFLTDYMEISRSIRQGCPLSALLYTLVAEPLGLAINGEKKIKGF
FT                 KIEINRTEQKIYQYADDTTLFLKDFKSVGKAMEIFDKYCRGSVAKVNKEKT
FT                 EYMKMGKVDVQQGNWEYKEQKKYINILGITLGYDENKTREIIWDELINKME
FT                 KRLCFWKQRVLFLKGKVLVLNSLFLSKMWYVLSVVSLPTWVYKKLKTMILN
FT                 FLWDDKPSKIAYNTIIGKVDEGGLRLIDPWIRIKSMRIKTLKKFLNEDNIL
FT                 WKSIMSYFINKCGQIRDDFLWMAFKDRMIENIPEFYEELLRTWKCFYNNIQ
FT                 TEIEGRKLYLQQPLFLNQNNKSKKQMFYENWYAVGFRQVKDILYEIKPGFL
FT                 PTQAIIDTLEEIEDVDDKEKIEDQYKKLRLALPDHWIKTIEENE"
XX
SQ   Sequence 5548 BP; 2269 A; 553 C; 1134 G; 1592 T; 0 other;
     tgctttcaag gaagtgtgag gtggcagtag ggagagaaag gctctcccat tttgatttgc        60
     tttattgttt tttttcttga ttttgcttaa attaaattgt attaattttg tttagtttta       120
     gttaaacccc agacagtgtt atctgtttgg ggttaaaacg ttttgaaagg atggacactt       180
     tggtaaagga actggaacta aaaatggact atggcagcat ggacaaagct actcctgaaa       240
     acaacaattc aagagattca aacaacggca tcgacgataa tgacacatgg gcaactgttg       300
     tggcaagaag gaggaaaact aaatcagaca caagtagaga aggaagtgga gaaatgcaac       360
     aaactaaagg taaagcaaat gctgaacact tggaaaacag ccaacaatca agtcatagaa       420
     atgagatgat aaacaaactg aaaagtcaag ctagatttca gcgacaatat aaaaaagaaa       480
     caactctgac aatgactgtg aaagatcctg aaaatatcac tgtaacgatg attataaagg       540
     ctgtggaaga taagactgga attggaaaat tgtttggact gaggaaaaaa tccaattttg       600
     actatgaact tactatggaa aatgaaacgg actgtgatca cttaatggat ggactaatga       660
     ttaaccaaca attttgtgaa gtatcaaaac tctgcgcaac tgagagaatg gtttcttttt       720
     tgaacttacc caactatatt caagatagtg aaatcatcca aaagctggtg gactggggag       780
     tttctccaat tctcccactg agaagaagat atcatccagg aacaactgtg gctgatggaa       840
     caaggtttat cagagtgaaa tttccaaaag aagttatgag tcttccttac aatgtaaagt       900
     ttgatacaga ggaaggacca aaatatttta gagtgataca tgatcagcag ataaaaacat       960
     gcagattatg tggaagtgct gaacatgaaa aaaaagactg cccacaattt gtgtgtagag      1020
     aatgtctgga gcaggggcat tttacgcggg actgtaaagc cccacggtgc caaggctgca      1080
     aaaagacaat attgtggtgc agatgtgaat cggatgagga agagactgga gttatggaaa      1140
     caaataaaca aatggagaaa tcaagcaatg aagaacggga agaggaagta caggaattac      1200
     caccggatga tttgaatgaa caagaagagg agcaggccat gagtgaagag gatgaaggag      1260
     atacagcaga cactgaggca caagatctaa tgaaagacga tggacacgac atggaagaag      1320
     aacaaggagc agcaggtgaa aatacagaaa gcagaattga ggaagaggta agcgatgatg      1380
     atgataatga agaaataaat attgggacta aagacagaac aatagacagc ataaacagaa      1440
     gacgcagaaa aactgtacaa ttaaatattc agcaagtgct taagaaacaa aaattacgaa      1500
     aggaagcaaa agcaaaacta aaaactgaaa gaactgatct aagattttag atcataaaaa      1560
     agactacaaa tgattgatgg attgtttcat ttggattttc ttttgtttgg atggcttgtt      1620
     ttcttttata tttctaatga acaacttatg tttggtttca attaatgtaa gagggctgtc      1680
     atccaaagtg aagtttgaaa atgtaattgc tttaacaaaa aaatgtgatg ttatatgtat      1740
     acaagagact ggatggaatg aaaacattgt taatgattta aaaaaatgtt gggatgggga      1800
     aatattgtat aataatgacc caaataagaa aaaaggcatg gcaatattaa ttagaagggg      1860
     aataggatat acatttgatg ttttatttaa agataattat ggaaggattt taactattaa      1920
     aattatgaat aaggatgaag aaataagaat atgtaatata catgctccaa atgaagactt      1980
     ggaaagagtt acttttttta aagatctaag tgttttaatg agtggatgga ataatgttat      2040
     tgttttagga gattttaata ctgttttaga aagaatagat gtagatgatc atatggtgtt      2100
     tagagcagat gttggaagaa gagaactgaa acacatgatt gaaaaacata aatatgtaga      2160
     tgtatggaga gagagaaata gagccaaaag agaatactca agaaggcagt gggtgaatac      2220
     agttttaaaa caaagcagat tagactatgt tttatgtaca agaaatgtag aatcttttat      2280
     ttcaaatatt ttttacaaga tttttagctg tagtgaccat gattttctgt atgtaatgat      2340
     ggatttcagt ggagttgaaa gaggaccagg tgtatgggtg tttaatacag agcttttaaa      2400
     gaatgatttt tataaaattg aaatggaaaa cattattatt aatagtgtga atgatgagtt      2460
     atatgatgaa gaaataagtg tgtggtggga caatgtaaaa ttagaggcca aaagattttc      2520
     aatagaatgt tcaaagaaaa tgcagaaagc caaaagagct aaagaaagac aattaaacaa      2580
     agaatgggag aatgaaatgg aaaagataac agaaggaaat atggatatta ggagaatagt      2640
     gatattagaa gagaaactga aaaaactaga agaggaaaaa tgtatgggag ctagaataag      2700
     aagcaagata aaaaatacag tggaaggaga aagaagtaca aagttctttt atgatctaga      2760
     aaaaacacga caaaaagcag atttgataaa gaatgtctca acaaaagaga aaactgtcaa      2820
     agataaagaa agtattttaa gaacagttaa agatttctat gaaactttgt ttaaagcaaa      2880
     aggagttcat gaagaagata aggatttttt attgaatcaa ataaaggtta aagtaagcga      2940
     agaggataaa aaactgtgtg atagtgatat aactgaagag gagatcaatg aagctataac      3000
     acaattaagt aatgggaaaa gccctggttt agatggtttg tcatctgaat tttataagac      3060
     ttttaaagat gttttaattc caattttaaa agatcttttt attgctattt ttaaaaaagg      3120
     acagttgagt gagagtatga agaaaggaat gattaaaatt atttataaaa ataaaggtga      3180
     taaagattat ttgcaaaatt atagaccttt aagtatgctt aatacagatt ataaaatatt      3240
     agcaaagatt ttagcaaaca gacttaaaaa ggtagttccc actcttatta ctactaacca      3300
     ggcttatggt gttataggta gagatatagc agacacagta acaagcatca gagatttaat      3360
     ctggtacata aaagaaaaaa aagatgaagg atttttattc agcatagatc tagaaaaggc      3420
     ttttgataga gttgagcata gctatttatt tgacataata cagaaatttg gctttggtga      3480
     gaattttatt aagtggataa aatgtttttt atacagatat ttttagttgt tttaaaataa      3540
     atggattttt aaccgactac atggagattt ctagatctat aagacaagga tgtcctttat      3600
     cagcgttatt atacacatta gttgctgaac cattaggctt agctataaat ggagaaaaga      3660
     aaattaaagg gtttaaaata gaaatcaata gaacagagca gaaaatttac cagtatgctg      3720
     atgataccac tctattttta aaagatttta aaagtgttgg aaaagctatg gaaatatttg      3780
     ataaatattg tcgaggatcg gtagcaaaag taaataaaga aaaaactgaa tatatgaaga      3840
     tgggaaaagt agacgttcaa caaggaaatt gggaatataa agaacaaaaa aaatacataa      3900
     atatcttagg cattacactg ggatatgatg aaaataaaac tagagaaata atttgggatg      3960
     aacttataaa taaaatggaa aaaagattat gtttttggaa acagagagta ttgtttttaa      4020
     aaggaaaagt actggtatta aattctcttt ttctatctaa gatgtggtat gttttaagtg      4080
     ttgttagtct acctacgtgg gtgtataaga aattaaaaac tatgatttta aactttttat      4140
     gggatgataa accatctaaa attgcatata acactatcat tggaaaggtg gatgagggag      4200
     gactaagact tatagatcca tggataagaa taaaaagcat gagaattaaa acattaaaaa      4260
     agtttttaaa tgaagacaat attctatgga aaagcataat gagttatttt attaataaat      4320
     gtggacaaat aagagatgat ttcttatgga tggcatttaa agaccgcatg atagaaaata      4380
     ttcctgagtt ttatgaagag ttgttgagaa catggaaatg cttttataat aatatacaaa      4440
     ctgagattga agggagaaaa ctttatttac agcaacccct atttttaaat cagaacaata      4500
     aaagcaaaaa gcaaatgttt tatgagaact ggtatgcagt gggttttaga caagtaaaag      4560
     acattttata tgaaataaaa cctgggtttt taccgactca agcaataata gatacactgg      4620
     aggaaataga agatgtagat gataaagaaa aaattgaaga tcaatacaag aagttaagat      4680
     tagcattacc agatcactgg atcaaaacta ttgaagagaa tgaaaaaaga aactgaaaat      4740
     agaaaaataa aagttttttt taaaaatgga tgaagataag attagtatca atgattgtcc      4800
     tatcaagatg ttttatacat gtttgtgtaa cactgtgttt aaaaaaacct aaatcaagag      4860
     aattttggga aaagttattt gaaaactttg atacttcaaa tatatggaaa aatgtaagat      4920
     caattttaaa aagtccagca ttggaaaact tagattttat gttaagacac aactgcataa      4980
     tgacagagat tatctttaaa aagattgggg tatcacaaga tgatttgtgt aaagtgtgtt      5040
     tggaaaaaaa ggaaggcgtg ttacacctat ttttaaattg taaaaagttg agtgatttta      5100
     tgaagatgtt gaaaacaatg gtatgcaatt ttctgtatga tgaaaacatt attttagaag      5160
     aatgggatac actgttttat ttggttttaa tgggaaaaca aaaaataagt ttgctcttaa      5220
     ttatatgttg actcttgcaa gatatacaat atggaaaaga agaaatatta tgaaacaaaa      5280
     gaaaaaagaa attccattgg ttttgttgta taaacagatt gtgactgagg aaataatggt      5340
     tatatatgac tattgcaaaa tgtatgaaaa gatggacatt tttgaaaaat gtattagaaa      5400
     aaataatcca tatattgtac aaacttggac tggttttaaa gttttcttac ctggagattt      5460
     ttaaatattt tatcttttaa atatttgtat gtataaatgt catgattgtt gatgatgtat      5520
     tttttaagaa agaaaaaaaa aaaaaaaa                                         5548
//
ID   Gypsy7-I_DR repbase;    DNA;    ZEB; 5822 BP.
XX
AC   .
XX
DT   07-DEC-2004 (Rel. 9.11, Created)
DT   07-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Gypsy7-I_DR is an internal portion of the Gypsy7_DR LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   GYPSY superfamily; Gypsy7-I_DR; Gypsy7-LTR_DR; Gypsy7_DR;
KW   endogenous retrovirus; gag; integrase; protease;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-5822
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy7_DR LTR retrotransposon from zebrafish.";
RL   Repbase Reports 4(11), 291-291 (2004).
XX
CC   [1] (Consensus)
XX
CC   Gypsy7-I_DR is a consensus sequence of the internal portion of
CC   Gypsy7_DR LTR retrotransposons. Its long terminal repeat is
CC   deposited in Repbase as Gypsy7-LTR_DR. The internal portion
CC   encodes the 1658-aa Gypsy7_DRp polyprotein (pos. 476-5449)
CC   composed of gag, protease, reverse transcriptase, and
CC   integrase domains. Given that some Gypsy7_DR genomic copies
CC   are flanked by 100% identical LTRs, it is possible that
CC   Gypsy7_DR elements are still transpositionally active. The gag
CC   domain is similar to the Arc protein important for long-term
CC   spatial memory in vertebrates (mammals, birds). Presumably,
CC   Arc was derived some 300-400 million years ago from a
CC   gypsy-encoded gag protein.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy7-I_DRp"
FT                 /translation="MANVNPSPSTSVDIDPPDIATPVWPPVQQRQFSSPSN
FT                 IPTYHSTPTQLDPYGRTQVHFHTTTPGVTSTVQPDPMQLCTSASTVESPPS
FT                 TATQHALPGYLPTPGREIHQLTAHVQGNWDRVFDCLKRQDKAVKELTEKSS
FT                 KSFSLHEAKLAKMESTHQQLLNTLTAQRKDDTETADQLTKAVKVMVTQEIQ
FT                 RSESTLISEIRFMVEQAQLELQKDIQATKEHSDKNFERLSSDLNHCSTEIN
FT                 AIKNQLDNLQTEISDVIPPIKQVSDPPSSAPVSVSTQSSSSVTAPMPFQTP
FT                 VIKSDHLKLTFPTFGRPSDDADPLLYVTRCKDFLALHPLDDPDILATFRTV
FT                 LYGTARDWWEVARSAISTWSEFETAFLSAFLSEDYEDELAERVRTRTQAEK
FT                 ESIRDFAFTYRAMCKRWKPTLTESELVKMILKNIKPHLASQLRSRVHTVDE
FT                 LVKLGLQLEKDYVQQLHYVEHVTQPSPQRIAPNRVEKPPVLCWRCKGLHPP
FT                 GSCPHYSSSVQTTQSSSHPPPTGNKRYFQTQKHGGNPSNNAMSVTLPSKSL
FT                 PKSTVTKSVVIPQQLIVPIYIGAWRGKAILDTGASYTLLHESLWKEIDPQA
FT                 SLHPWTLGPLYLANGEAEVPLGWTNFEIILHDKVFPTQAAILTPKALAYSV
FT                 VLGLDFIYSSGLQINVVDQTYSFKSNPNEEYPFQPGHASVPVGRSQHLNKN
FT                 AQTQHSSKTLSLLSSIPPPLPFPVVSQLAPSSDDQALIEMAVAEAHLPLES
FT                 KPQLLHLLQSNPKVCTLQLGRTTVLQHCIYTTHPVPVKQRPYRLTPGKQAI
FT                 VEEQIEEMLKAGVIEQSCSPWASPVVLVPKKDNSLRFCVDYRKLNAMTESD
FT                 AYPIPNITEILESLSGASTFSSLDLNCGFWQVPMDDKSKLMTAFITSRGLY
FT                 HFNVMPFGLKNAPATFQRLMEIVLRDLLGKICYVYIDDIVIYSPTLTQHLH
FT                 DIQTILERLEKAGLTLNLKKCSFCLPEITFLGHVVSHQGVAADPKKVEVIH
FT                 AYPVPQNLKDVQRFLGLAGWYHRFVPNFSRIAEPLNNLKKKGRQFKWDSLC
FT                 QQAFDNLKFCLTTPPILGHPDLNIPFTVYTDASDSGLGAVLTQRKEQGGEE
FT                 VIAYASRTLTKAEVNYSTTEKECLAVVWALDKWQHYLEPRMFTVVTDHSAL
FT                 QWVMNSTKPASRLMRWALRLQRYDFVIEYRKGRLNVAPDALSRMYSMPGCN
FT                 LYTTEKDLPDFPVTPQTIWEEQHQDTDIMKIFQALAKNEQQEQAQYTVLED
FT                 KLYHITHLADETVHYKVVIPSTLRPTVLEWYHDTPLSGHLGIYKTYKRIQD
FT                 VAYWPGMWTDIKKYVKNCAKCQVTKWDNRKPAGKLQQVTTSRPNEMWGVDI
FT                 MGPMPKSGKQNEYLLVFVDYFSKWVELFPMRHATAQTIATILRQEMLTRWG
FT                 VPDFILSDRGAQFVSSLFTELCGKWNITPKLTTAYHPQTNMTERVNRTLKS
FT                 MIAGFVEDNHKTWDTYLPELRFALNSAIQESIGMTPAELHLGRKIHSPMDK
FT                 LLHRRDLSPTKPAYDMVHKITQLQRQAKENYTKAQKRQLRSYDKNRRDVFF
FT                 RERERVWVRNFPISSAQHHFSAKLAPKWKGPYRIIQQLGPVNYQVSLEDTG
FT                 EDVRNVHVCNLKPCFPTAEELEAREKNCTKILPQQDQKRF"
XX
SQ   Sequence 5822 BP; 1796 A; 1330 C; 1183 G; 1513 T; 0 other;
     taagtggcgc ccgaacaggg accctgaaca cttaaaaaaa aaaaaaaaaa aaaaaaaaaa        60
     aaaactgaac actttaaaag acattgaaca ccattgaaac cttactttat tttgggaaat       120
     tttgaacttt gaaactcatt tgaattgttt gactgatttc agttgacaac aacctttttg       180
     actttttgaa ctgttttgct ttactgacaa agactttgga aaaaacaatt ttgttaaaaa       240
     aaaaaaaaaa aaaaaaagtt gttatagaac atttgtgtca ttgtacagga attgtactga       300
     ttttgatttt gtataccttg tgaatttggt acttgtggta cttttgacat ctctctctct       360
     atatatatat tttttgtgac cacattgcct aaaaagtcaa cattttcttt tttgattttt       420
     attttttcaa aacccttata ttgttccttg acttacactc atacacacta taaacatggc       480
     caacgtcaat ccttcccctt caacttccgt ggatattgat ccaccagata tagccactcc       540
     agtttggcca ccagtgcagc aaagacagtt ctcatcacct tccaacattc ccacatacca       600
     ctccacaccc actcagttag acccttatgg aaggactcaa gtgcatttcc acaccaccac       660
     tccaggtgtt acttctacag ttcaacctga cccaatgcaa ctgtgcacaa gtgcatccac       720
     ggtagaatca ccgccctcca cagcaaccca gcatgctctt cctggatacc tccctacacc       780
     tggaagagaa attcatcaac ttactgctca tgtacaagga aactgggatc gtgtatttga       840
     ctgtctgaaa cggcaagata aagctgtgaa ggaactcacc gaaaaatcgt ctaaatcttt       900
     ttccctgcat gaagcaaagc ttgcaaaaat ggaatccact catcagcaac tcctgaacac       960
     cttaactgca caacgaaaag atgacacaga gacagcggat caactcacta aagctgtgaa      1020
     ggtgatggtg acacaagaaa tccaaaggag tgaaagtacc ttaatttcag agattcgctt      1080
     catggtggaa caagctcagt tggaattgca gaaggatatt caagctacca aggaacactc      1140
     tgacaagaat tttgaacgcc tttccagtga tctaaatcac tgcagcactg aaattaatgc      1200
     cataaaaaac caacttgaca atcttcaaac agaaataagt gatgtcatcc cacctataaa      1260
     gcaagtgtct gatcctccaa gcagtgcacc tgtatccgtt tcaacacagt cttcatcttc      1320
     agtgactgct ccaatgcctt ttcaaacacc tgttataaaa agtgatcatt taaagttaac      1380
     ttttccaacg tttggaagac cttcggatga tgctgatcca ctgctatatg taacacgctg      1440
     caaagatttc ctggccttac accctctaga tgatccagac atcctagcta ccttccgcac      1500
     tgtcctgtac ggtacagccc gggattggtg ggaagtggct cgctctgcta tttccacatg      1560
     gagtgagttt gaaactgctt ttctctcagc tttcctttca gaagactatg aggatgagct      1620
     ggcagagagg gttagaacta gaacacaagc agagaaagag tcaattagag actttgcttt      1680
     tacatacaga gcaatgtgta aacgatggaa gcccacatta actgagagtg aattagtaaa      1740
     aatgattcta aaaaacataa aacctcacct agccagccaa cttcgaagcc gtgtccatac      1800
     agtggatgag ttggttaaac tgggccttca gcttgagaag gattatgttc agcagttaca      1860
     ttatgtagaa catgtgactc aaccctcacc acaaagaatt gcccccaacc gagttgagaa      1920
     acctccagtt ttgtgttgga gatgcaaagg tctgcatcca ccaggtagtt gtcctcacta      1980
     ttcctcctct gtgcaaacca ctcaatcatc tagtcaccct cctcctactg gaaataaacg      2040
     ttattttcag acccaaaagc acggaggtaa tccatctaac aatgccatgt ctgttacact      2100
     tccttcaaag tcattaccca agtcgactgt tactaaatct gtggtcatac cacaacagct      2160
     gatagttcca atttacattg gggcttggag aggaaaagcc atattggata cgggtgccag      2220
     ttacacttta ctccatgaga gtttgtggaa ggagatcgat ccccaagcca gcctccatcc      2280
     ctggacactt ggcccactct atctggccaa tggagaagcc gaagttcctt taggatggac      2340
     gaattttgaa atcatattgc atgacaaagt ttttcctact caagctgcca ttctcactcc      2400
     aaaagccttg gcttactctg tagtcttggg tttagatttc atttattcaa gtggtctaca      2460
     gattaatgta gttgaccaga catactcttt taagtccaac cctaatgaag agtacccttt      2520
     tcaacctgga catgctagtg ttcctgtggg aagatcccaa catttgaaca aaaatgcaca      2580
     aacccaacat tcaagtaaga cactatctct gctcagctct attcctccac cattaccgtt      2640
     tccagtagta tcccaacttg cacccagtag tgatgatcaa gctctgattg agatggctgt      2700
     tgccgaagca cacttaccac tagaaagtaa gccacagtta cttcatcttc tccagtcaaa      2760
     cccaaaagtc tgtactcttc agcttggaag aaccactgtt cttcaacatt gcatttacac      2820
     cactcaccca gtacccgtta agcaacgtcc ttatcggttg acacctggaa aacaagccat      2880
     agtagaggaa cagattgaag agatgctaaa ggctggtgtc atcgaacagt cttgttctcc      2940
     atgggcatct ccagtagttc ttgttcctaa gaaagacaac agtcttaggt tctgtgtgga      3000
     ctacagaaaa ttgaatgcga tgacagaaag tgatgcttat ccaataccta acatcacaga      3060
     gattttagag tctctttctg gagcatccac attctcatcc ttggacctca actgtggatt      3120
     ttggcaggta ccaatggatg acaaaagcaa gttgatgact gcattcatca cctctagagg      3180
     gttatatcat ttcaatgtta tgccctttgg actgaaaaat gctcctgcta ccttccaacg      3240
     tttgatggaa atcgtcctga gagatttact tgggaaaatt tgctacgtct atattgacga      3300
     cattgtcatt tactcaccca ccttgaccca acatcttcac gacatccaga ccatcttgga      3360
     gagactggaa aaagcaggtc taaccctaaa cctaaaaaaa tgttcctttt gcctacctga      3420
     aattaccttt ctaggacacg tagtgagtca ccaaggagtt gcagctgacc ccaagaaggt      3480
     agaggtcatt cacgcttacc cagtcccaca aaaccttaag gatgttcagc gattcttagg      3540
     actggcagga tggtatcacc gttttgtacc aaatttttca cgcattgctg aaccactgaa      3600
     taatctgaaa aagaaaggac gacaattcaa gtgggattca ctatgccagc aagcatttga      3660
     caatctaaag ttctgtctta ccacacctcc catcctgggc catccagatc ttaacatacc      3720
     ttttactgtg tatactgatg ccagtgactc aggactaggg gctgttttga cccagcgtaa      3780
     agagcagggt ggcgaagaag taattgctta tgccagtaga accttgacta aggcagaagt      3840
     gaattactcc accacggaga aagagtgtct ggctgtggtg tgggctttag acaagtggca      3900
     acactacctg gaacctagaa tgtttacagt ggttacagac cattccgctc tgcaatgggt      3960
     catgaattcc accaaaccag ccagtcgact catgagatgg gccttgcgct tgcaacgcta      4020
     tgattttgtg atcgagtaca gaaaaggacg gctgaatgtt gctcctgatg cgttgtcccg      4080
     tatgtattcc atgccaggct gtaacttgta caccacggaa aaggatctgc ctgatttccc      4140
     tgtcacccca caaaccatct gggaggaaca acatcaagac acagacatta tgaagatctt      4200
     tcaagctctg gccaaaaatg agcaacagga acaagcccag tacactgtgt tggaagacaa      4260
     gctgtatcac atcacccacc tagcagatga aactgttcac tacaaagtag tcattccatc      4320
     tactcttaga ccaacagtac tagaatggta ccatgatact cccttaagcg gacacttggg      4380
     aatttacaag acgtacaagc gaatacaaga tgttgcttat tggccaggaa tgtggacaga      4440
     cataaaaaaa tatgtcaaaa attgtgccaa atgtcaagtc accaaatggg acaaccggaa      4500
     acctgctggc aagttacaac aagttacaac atcacgacca aatgagatgt ggggagtgga      4560
     tataatgggt ccaatgccga agtctggaaa acaaaatgag tacttactcg tatttgtcga      4620
     ctatttctcc aaatgggttg aactgtttcc catgcggcat gccacagcac agaccattgc      4680
     caccatacta agacaagaaa tgttgactcg gtggggagtc cctgacttca tattgtcaga      4740
     cagaggagcg cagtttgttt cttctttatt cacagagctg tgtggaaaat ggaacatcac      4800
     tccaaaactt accactgctt atcacccaca gaccaacatg acagaaagag tgaatcgcac      4860
     tttgaagtct atgattgcag ggtttgtgga ggacaaccac aagacctggg atacatactt      4920
     accagagtta cgttttgctt taaattctgc aatacaggaa tccattggga tgacgcctgc      4980
     cgaacttcac ctaggtcgga aaatccacag tcccatggat aaactgctgc acagacgtga      5040
     tctctcacca accaagcctg catacgacat ggtacacaaa ataacacagt tacaaaggca      5100
     agccaaagaa aattacacaa aggctcaaaa acggcagtta aggagctatg acaagaacag      5160
     aagagatgtg ttcttcagag aaagagagcg tgtatgggtc cgtaattttc ccatctctag      5220
     tgcacaacat cacttcagtg ctaaactagc tccaaagtgg aaaggaccat accgcattat      5280
     ccagcaacta ggtcctgtga actaccaggt atctcttgaa gacactggtg aggatgtgag      5340
     aaatgttcat gtgtgtaatc ttaaaccatg tttccccacg gcagaggagc tggaagcaag      5400
     ggagaaaaat tgcacaaaga tcctcccaca gcaggatcaa aaaagatttt aaaaatgtaa      5460
     atcctcgtga gcattgaaca acatgggttg ttctcacgaa gggggggaga gtgtgacgag      5520
     atggatgctt taatgtttat ttttctcaag tgccactagg gggcgctgct ccgaccggtc      5580
     cttcctatcg cttccagaca atacttccgg gggtcggaag gaagcggaag ggcaggtaaa      5640
     caatcggaga ttataaaaga gggagaaaag gccagagaag gggcttcttg ttgttttggt      5700
     gtcgggtatt tggtggcaag aattggagaa ggaggagaag aacggtgtaa ggtggagagc      5760
     ttgttggttt caatgactgt gtgaggaaaa aactgagggg tggaagcaat tcgtggacgt      5820
     gg                                                                     5822
//
ID   Gypsy12-I_DR repbase;    DNA;    ZEB; 6169 BP.
XX
AC   chr8;
XX
DT   07-JAN-2005 (Rel. 10, Created)
DT   07-JAN-2005 (Rel. 10, Last updated, Version 1)
XX
DE   An internal portions of the Gypsy12_DR LTR retrotransposon - a
DE   fossilized copy.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   GYPSY superfamily; Gypsy12-I_DR; Gypsy12-LTR_DR; Gypsy12_DR;
KW   endogenous retrovirus; gag; integrase; reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-6169
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy12_DR, an LTR retrotransposon from zebrafish.";
RL   Repbase Reports 4(12), 317-317 (2004).
XX
DR   Zebrafish.; chr8; Positions 22688544 22682376.
XX
CC   Gypsy12-I_DR is an internal portion of the Gypsy12_DR
CC   LTR retrotransposon that belongs to the Gypsy superfamily.
CC   Its long terminal repeat is deposited in Repbase
CC   as Gypsy12-LTR_DR. Gypsy12_DR is characterized by 4-bp target
CC   site duplications. The internal portion encodes two proteins:
CC   the 469-aa gag Gypsy12_DR1p (pos. 153-1559) and 1543-aa
CC   polyprotein (pos. 1475-6105, conceptual translation) composed
CC   of the protease, reverse transcriptase, and integrase domains.
CC   PBS is identical to that in Gypsy9_DR. The internal portion is
CC   flanked by 99% LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy12-I_DR1p"
FT                 /translation="MDISQTAQWSTEENINSSRAIVLSNVPLNTSDETIEK
FT                 VLNTVKVFGRTQIHGRRGDVTGKHLFVLVETRADLDPSTIPPEIGIESEAG
FT                 PWPVHFVGRLQVQNPAPENDTFQSKLLTLMQQEGKSMDEVKAILMGEHSPK
FT                 SDINVDLVDAIGKLVDRCNQASNDGPSYRKLRLFSGLKPVPPGEEEYEIWM
FT                 EQAAQMISEWQCTEASKKQRIVESLRGPAADIVRFLKVSQPSATATEYLAA
FT                 LETAYGTTECGPDLMAKFRHTYQDNGEKLSAFLYRLDKLLHRALLKGGIDV
FT                 AGINKARMEQLIKGALTNDMVALRIRMTHTLQNPPSFTQLMKEIREEEHWV
FT                 AARENVKASVATVISPQSDGPSELQSLKKEVKELSSQMSHLLNVATATCAS
FT                 ECAPQKTSSKNSESVKRDKSQPTKLTQQPVPGIFCYKCGEDGHKKWECKGQ
FT                 EDLRKVNQKLIKMHRLQGNWAGVQ"
FT   CDS           0..0
FT                 /product="Gypsy12-I_DR2p"
FT                 /translation="MQGTRGPQESKSKADQNASFAGKLGRSSVKERHGAPG
FT                 TTRSNCDSFLLDASKPRLPEGLIGPVSEVPVQIEGVYAKALLDSGSQVTLL
FT                 YRSFYDTYLKHLELQPVENLEIWGLSSHKYPYDGYLPLRLEFTESVAGVHQ
FT                 IIDTLAIVCPDPVKREGIAILLGTNTSLVKKLLESCRKQAGEEFLNVLTIH
FT                 PVIREAFETIQLTDFSQDDSDTHGTVWFIKHNPVVLKPNQVRQLPGLLKFP
FT                 GQSTESLVLVDRVADSDTSSEHLDVRPELHAASVVSSRQVTVTVRNMSNRE
FT                 IWVKRGTPLAHVLPVSLVPQLTAKQPPVQNPLSPASFDFGDSPMPEEAKQS
FT                 LREKMMQRKDVFSLHEWDVGCSKSTTHEIRLNDSRPFRERSRRLAPADLED
FT                 VRLHLQELQSSGIISESRSPYASPIVVVRKKSGKVRMCVDYRTLNQRTTPD
FT                 QYTVPRIEDALHSLSGSKWFSVLDLRSGYYQIPMSDADKEKTAFICPLGFY
FT                 QFERMPQGICGAPATFQRVMERTVGDMNFLEVLVYLDDLIVFGRTIDEHEE
FT                 RLLKVLDRLSDEGLKISLDKCQFGRTSVNYVGHIVSQDGISTDPSKIEAVV
FT                 SWPKPQTVTELRSFLGFCGYYRRFVKDFSKFCRPLNELLKGYPSTRKNRDS
FT                 LVCNTKPCYKSSEPFGSRWSAQCDTAFETLKKCLTQAPVLAFADVQKPYVL
FT                 HVDASMDGLGGVLYQEHESGLRPVAFISRSLSPSERNYPAHKLEFLALKWA
FT                 VVDRLHDYLYGVPFEVRTDNNPLTYITKSAKLDAAGHRWLSALTTYNFSLK
FT                 YRPGRRNVDADALSRRPHTYRSEDDEWQEIPAVGVRTFCQAVSLEKRAENG
FT                 FYTCVVKQAGAHMSAVPKAYSHVMEVAADHLPLFSSSDLQTAQRNDSLLGE
FT                 VWKAVCDKKPASSIRSSHPSMKILKREWEKLVVNNGMLYRIVRQSNHKVKQ
FT                 QLVLPKQFHSSVLKSLHDDIGHLGFEKSYGLVRDRFYWPHMKPDVESYCKT
FT                 CERCIKRKTLPQRAAPLSHMQSSGPLDLVCIDFLSIEADSRNVCNVLVVTD
FT                 HYTRYAQAFPTRDQKASTVAKTLWEKYFIHYGLPTRIHSDQGRDFESQLVS
FT                 EMLTMLGIKKSRTSPYHPQGDPHLRDLTELXNMLGTLQPSQKSKWSQHIAR
FT                 LVHAYNCTVNEATGFSPYFLMFGREARLPVDVCFGVSADSSSSGSYSKYVS
FT                 KMKQELQAAYQLAQVSSEKMNQSNKARYDQKVRYHSLSVGDRVLIRNLGLK
FT                 GKQKLADRWSENPYVVESQLSGIPVYRLKPVDGNGPIKVMHRNHLLPLGQE
FT                 VRLKPKVDLGPTSLPKNLRHRSVKDKRKTAQSENPPIAVDVFSREHDSSDS
FT                 DSEYGCYVEDMAPISSESAQEIQGETPEQAVECLDYSNAHRVSEIPVIPCQ
FT                 SETSEFQLTDADRNTDVVDDVMTEVSESTSQTTVQTTDNETQPEIVPFEVR
FT                 RSNRERKPSTRFTYDKLGVPYLHSVSSKCCGINALTTDVLNVYGSLNKSHA
FT                 WWCNPNALCKTCKNRPVLVPCKQMVAM"
XX
SQ   Sequence 6169 BP; 1783 A; 1200 C; 1458 G; 1728 T; 0 other;
     tttttggagg caccgctggg atcttgtttt tttccttttt accagatttt tttttctctt        60
     tagcagaaaa aaatatatat atctgaaata gtgttaatta atattgatat atttttctgg       120
     cttattttgc atagtaactc attagttgaa gtatggatat ctctcagact gctcaatgga       180
     gtacagagga gaacataaat tcctcacgtg ccattgtgtt aagcaatgtt cctttgaaca       240
     ctagtgatga gactattgag aaagtgttaa acacagtgaa ggtttttggt cgtactcaaa       300
     ttcatggtcg acgtggtgat gtgactggaa aacatttgtt tgtgttagtg gagactagag       360
     ctgatcttga tccaagcacc ataccacctg aaataggtat tgaaagtgaa gctggaccct       420
     ggcctgtaca ctttgtaggt agactacaag ttcagaaccc tgctcctgaa aatgacacat       480
     ttcagtccaa gttgttaaca ttaatgcagc aggagggcaa gtctatggat gaagtgaaag       540
     ccattttgat gggggagcat tctcctaaat ctgatattaa tgtggattta gttgatgcca       600
     taggtaaatt agtggacagg tgtaatcaag cgtctaatga tggacccagt tacagaaaac       660
     taaggttgtt ttcaggtctg aaacctgttc ctccaggtga ggaagaatat gaaatctgga       720
     tggagcaagc cgcacaaatg atcagcgaat ggcaatgcac tgaagcttct aagaaacaac       780
     gcattgttga gagtttgcga ggtcctgctg ctgatatcgt taggtttcta aaagtgagcc       840
     agccatctgc cactgcaact gagtacttgg ctgctcttga aactgcgtat ggaactactg       900
     agtgtgggcc tgacttgatg gctaaatttc gtcacactta ccaggataat ggagaaaaac       960
     tttcagcttt cttgtatcgc ttagataaac ttcttcacag agcgttgtta aagggtggga      1020
     ttgatgtagc tggaataaac aaagctagaa tggagcagct aattaaggga gcacttacca      1080
     atgatatggt tgctctgcga atcagaatga ctcacacttt gcagaatccc ccatctttta      1140
     cacagttaat gaaggaaata cgtgaggagg aacactgggt ggctgcaagg gaaaatgtca      1200
     aagcttcggt tgccactgtt atctctcctc agtcagatgg gccctctgag ttacaaagcc      1260
     tgaagaagga ggtgaaggag ctatcttcac agatgagtca cctattgaat gtggctactg      1320
     caacgtgtgc ttctgagtgt gctcctcaga aaacatctag taaaaactct gagagtgtga      1380
     aacgagacaa atcacaacca actaaactca cccagcaacc agtgcctggg atcttttgct      1440
     acaaatgtgg tgaggatgga cataaaaagt gggaatgcaa gggacaagag gacctcagga      1500
     aagtaaatca aaagctgatc aaaatgcatc gtttgcaggg aaactgggca ggagttcagt      1560
     gaaggaacgg cacggggctc ctgggacaac acgttccaat tgtgattctt ttttacttga      1620
     tgccagtaaa ccaagattgc ctgaagggtt gataggacct gtttctgaag tgcctgtcca      1680
     gatagaaggt gtttatgcaa aagcccttct tgacagtggc tcacaggtga ctctattata      1740
     ccgcagtttt tatgacactt atctaaaaca cttggaactt cagcctgtgg aaaaccttga      1800
     gatatggggt ttaagttcgc ataaataccc ctatgatggg tacttgcccc ttagacttga      1860
     gtttacagag agtgtagctg gagtgcatca aataattgac acacttgcga ttgtatgccc      1920
     tgaccctgta aagcgagaag gaatagccat tttgctcggg actaacacta gtctggtgaa      1980
     gaagctactt gagtcttgtc gtaaacaagc tggcgaagaa ttccttaatg tgctgaccat      2040
     acatcctgta atcagagaag catttgagac tattcaacta acagattttt ctcaagatga      2100
     ctccgacacg catgggacag tttggttcat aaagcataac ccagttgtcc taaaaccaaa      2160
     ccaagttagg cagcttcctg gtctattgaa atttcctggt caatcgactg agtcattagt      2220
     attagttgac agagtagcag atagtgacac aagttctgag cacctagatg tgagacctga      2280
     actgcatgca gcatctgttg tatccagtcg gcaagttaca gtgactgtga ggaacatgtc      2340
     taatagagaa atatgggtga agagaggaac tccgcttgca cacgttcttc cggtgtcctt      2400
     agtgccacaa ttgactgcta aacaaccacc agtacaaaat cctttgtcac ctgcttcttt      2460
     tgattttgga gattccccaa tgcctgagga agcaaaacag agcttacggg agaaaatgat      2520
     gcagagaaag gatgtgtttt ctctacacga gtgggacgtg ggctgttcaa aaagcaccac      2580
     tcatgagata aggttgaatg attcgcgccc tttcagagag cgatctcgtc gtcttgcccc      2640
     tgctgactta gaagatgtgc gactgcattt acaagaactg cagagtagtg gtattatttc      2700
     tgagtctcgc agcccctacg cttcacctat tgttgttgtg cgtaaaaagt cagggaaggt      2760
     tagaatgtgt gtcgactatc gaacacttaa tcaacgaact acaccagacc aatatactgt      2820
     gccccgcatt gaagatgctc tccatagtct atcgggaagt aagtggttca gtgttctcga      2880
     tttgaggagt gggtactacc agatacccat gagtgatgct gataaggaaa agactgcgtt      2940
     catatgcccg ttagggttct atcaatttga acgtatgcct cagggtattt gtggagcacc      3000
     cgccactttt caaagagtca tggaacgtac tgtaggggat atgaactttt tggaagtgct      3060
     tgtatacctt gatgatttga ttgtctttgg gcgaaccatt gatgagcacg aagagcgtct      3120
     tttgaaagtg ctcgataggc taagtgatga gggactaaag atctcccttg acaagtgtca      3180
     gtttggtagg acttcagtga actatgtagg acatatagtg tcacaagatg gaatttcgac      3240
     agatccgtcc aagatagagg ctgttgtatc ctggcctaag ccccagacag tgacagagct      3300
     caggtctttt ctaggattct gtggatatta caggcgcttt gttaaggatt tctcgaagtt      3360
     ttgccgccct cttaatgaat tgctgaaggg atatccatct accaggaaga acagagattc      3420
     acttgtttgc aacactaagc cctgctataa gtcctctgaa ccgtttggtt ctcgatggtc      3480
     ggctcagtgt gatacagctt ttgaaacgtt gaaaaagtgt ttgacacaag caccagtgtt      3540
     agcctttgct gatgtacaga agccctatgt cttgcacgtg gacgcaagca tggatggact      3600
     aggaggagtt ttgtatcaag aacatgagag cggattacgt ccagtagctt ttatcagtcg      3660
     cagcttatcc ccttcagaga gaaactatcc agcccataaa ctggaattct tagcactgaa      3720
     gtgggctgtt gtggatcgac tgcacgacta tctatatggt gttccgtttg aggttagaac      3780
     cgacaataat cctctaacct atataacaaa atcagcaaaa ctggatgcgg caggtcaccg      3840
     ttggctgtct gccttgacca cctacaattt cagcctaaaa tacagacctg gccgcagaaa      3900
     tgttgatgct gatgcgttgt cgaggcgtcc gcatacttac cgcagtgagg acgatgagtg      3960
     gcaggaaatt ccagctgtag gggtgaggac tttttgtcaa gctgtgtccc ttgaaaagag      4020
     agcagagaac ggattttaca cttgtgtggt gaaacaagct ggagcacaca tgtctgctgt      4080
     ccccaaagct tactctcatg ttatggaagt agctgctgat cacctaccct tgtttagttc      4140
     aagtgacctt caaacagctc agaggaatga ctctttactt ggcgaagtgt ggaaagctgt      4200
     gtgtgataag aaacctgcta gtagcattcg aagtagccat cctagtatga agattctgaa      4260
     acgggagtgg gaaaaattgg tagtaaataa tgggatgctt tacagaattg tcagacagag      4320
     taatcacaaa gtgaaacaac agcttgtact accaaaacaa tttcacagct cagtgctgaa      4380
     gtctttgcat gacgacattg gacatttagg gtttgagaag tcctatggtc tagtccgaga      4440
     tcgattttat tggccacaca tgaagcctga tgtggaatcc tactgtaaga cctgtgagcg      4500
     ctgcatcaaa agaaagacgt tacctcaaag agcggctcct ttgtcacata tgcagagttc      4560
     aggacctctg gaccttgtat gtattgattt tctttccatt gaagctgact ctcgaaatgt      4620
     gtgcaatgtc ttagtggtta ctgaccatta cacacgctat gcccaagctt ttcccactag      4680
     agatcaaaaa gcttcaacag tggcaaagac tttgtgggag aaatatttca tacattatgg      4740
     tctccctact cgaattcact ctgaccaagg cagagatttt gagagccagt tagtgtctga      4800
     aatgctgact atgctaggga ttaagaaatc tagaacatca ccatatcatc cccaaggtga      4860
     tccccacctg agagatttaa cagaactctg ttgaatatgc tgggtacctt acagcctagt      4920
     cagaaaagta aatggagcca gcacatagca cgtttagtac atgcttataa ttgtactgtc      4980
     aatgaagcta caggtttctc tccttacttt ttgatgttcg gccgagaagc tagactgcct      5040
     gttgatgttt gctttggtgt gtctgctgat agctcatcat ctggttccta ttcaaagtat      5100
     gtgtccaaaa tgaagcagga attacaggca gcttatcagt tggctcaggt ttcctctgaa      5160
     aagatgaatc aaagtaacaa agcaaggtat gatcagaaag ttcgctatca tagtttaagt      5220
     gtgggggaca gagttctgat ccgaaacctt ggtctcaagg gaaaacaaaa acttgccgat      5280
     aggtggagtg aaaatcctta tgtagtggaa agtcaattgt ctggtattcc agtttatcgt      5340
     ttgaagcctg ttgatggtaa tggaccaatt aaagtcatgc accggaatca cctcttgcct      5400
     ttaggacaag aagtaaggct aaagcccaag gtagatttag gtcctacttc tttacctaag      5460
     aatttaaggc atagaagtgt gaaagacaag cgtaaaactg ctcagtcaga aaacccgcct      5520
     attgcagttg atgttttctc aagagaacat gattcttcag attcagactc tgaatatggg      5580
     tgttatgttg aggatatggc accgatttca tctgaaagtg ctcaggagat acagggtgaa      5640
     actcctgaac aagctgtaga atgcttagac tatagcaatg ctcaccgtgt gtctgaaata      5700
     ccagttatcc catgtcaaag tgaaacctct gaatttcagt taaccgatgc agataggaac      5760
     actgatgtag tggatgatgt aatgactgag gtttctgaga gtacatcaca gactactgtt      5820
     cagactactg ataatgaaac tcagccagag attgtacctt ttgaagtacg taggtctaat      5880
     agggagagaa aaccttctac cagatttact tatgacaagc tgggtgtacc ataccttcat      5940
     tctgtatcat ctaaatgctg tggtattaat gcacttacta cagatgtgct taatgtttat      6000
     gggagtttaa ataaatcaca tgcttggtgg tgtaatccca atgctttgtg taaaacctgt      6060
     aaaaaccgac ctgtacttgt gccctgtaaa cagatggttg ctatgtaatt gatctgcagc      6120
     aatttagtaa ccagcatggg gacatactgg atatttggtg gggggagta                  6169
//
ID   ANGEL       repbase;    DNA;    ZEB; 308 BP.
XX
AC   .
XX
DT   20-JUN-2000 (Rel. 4, Created)
DT   20-JUN-2000 (Rel. 4, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - ANGEL.
XX
KW   Zebrafish MITE; ANGEL; Miniature Inverted Repeat Element (MITE);
KW   DNA element; consensus.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-308
RA   Izsvak Z., Ivics Z., Shimoda N., Mohn D., Okamoto H.,
RA   Hackett B.P.;
RT   "Short inverted-repeat transposable elements in teleost fish and
RT   implications for a mechanism of their amplification.";
RL   J Mol Evol 48, 13-21 (1999).
XX
RN   [2]
RP   1-308
RA   Izsvak Z., Ivics Z., Hackett B.P.;
RT   "Repetitive elements and their genetic applications in
RT   zebrafish.";
RL   Biochem Cell Biol 75, 507-523 (1997).
XX
RN   [3]
RP   1-308
RA   Ivics Z., Izsvak Z., Hackett B.P.;
RT   "Genetic applications of transposons and other repetitive
RT   elements in zebrafish.";
RL   Methods Cell Biol 60, 99-131 (1999).
XX
RN   [4]
RP   1-308
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [4] (Consensus)
XX
SQ   Sequence 308 BP; 109 A; 47 C; 50 G; 99 T; 3 other;
     ttaagggata gttcacccaa aaatgaaaat ttactcaatt tactcaccct yaagttgttc        60
     caaaccttat gagtttcttt cttctgttga acacaaaaga agatattttg aagaatgttg       120
     gactgtaacc attgacttcc atagtaggaa aaacaaatac tatggaagtc aatggttaca       180
     ggtttccaac atttttcaaa atatcttctt ttgtgttcaa cagaagaaag aaactcaaah       240
     aggtttgaac aatnaagggt gagtaaatga tgacagaatt ttcatttttg ggtgaactat       300
     ccctttaa                                                                308
//
ID   TDR2        repbase;    DNA;    ZEB; 941 BP.
XX
AC   .
XX
DT   04-MAR-2002 (Rel. 7.02, Created)
DT   04-MAR-2002 (Rel. 7.02, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   Harbinger; DNA transposon; Transposable Element; Tc1 superfamily;
KW   Tdr2.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-941
RA   Gottgens B., Barton M.L., Grafham D., Vaudin M., Green R.A.;
RT   "Tdr2, a new zebrafish transposon of the TC1 family.";
RL   Unpublished.
XX
RN   [2]
RP   1-941
RA   Jurka J., Drazkiewicz A.;
RT   "TDR2: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2(2), 30-30 (2002).
XX
CC   [2] (Consensus)
XX
CC   TA-target site duplication.
XX
SQ   Sequence 941 BP; 294 A; 183 C; 190 G; 272 T; 2 other;
     tacactacct gacaaaagtc ttgtcgtcga tcccagttgt aagagcaaca aataataact        60
     tgacttctag ttgatcattt ggaaaagtgt cagaaggtag atttttctca gatgaatcat       120
     ctgttgaact gcatcccaat catcacaaat actgcagaag acctattgga acctgcatgg       180
     acccaagatt ctcacagaaa tcagtcaagt ttggtgaagg aaaaamtcat ggtttggggt       240
     tacattcagt atgggggcgt gcaagagatc tgcagagtgg atggcaacat caacagcctg       300
     aggtatcaag acatttgtgc tgcccattac attacaaacc acaggagagg gcaaattctt       360
     cagcaggata gcgctccttc tcatacttca gcctccacwa catcaaagtt cctgaaagca       420
     aagaaggtca aggtgctcca ggattggcca gcccagtcac cagacatgaa cattattgag       480
     catgtctggg gtaagatgga ggaggcattg aagatgaatc caaagaatct tgatgaactc       540
     tgggagtcct gcaagaacgc tttctttgcc attccagatg actttattaa taagttattt       600
     gagtcattgc agagatgtat ggatgcagtc ctccaagctc atgggagtca tacacaatat       660
     taattctttt tccactgcac catgacttta tattctatac tgtacattat ttctgttaag       720
     tgacaagact tttgtctaag caaagtcaga ccttactgtc ctaattaaat aattaaaaat       780
     caaggcatga tcatatttta ttttggtaaa ataagtgtaa tctagaggcc tttgcctttc       840
     atataagcca cttctgatac caaatgatca actagaagtc aagttattat ttgttgttcc       900
     taaaacttgg ataggcgaca agacttttgt caggtagtgt a                           941
//
ID   LDR1        repbase;    DNA;    ZEB; 4963 BP.
XX
AC   AL591172;
XX
DT   04-MAR-2002 (Rel. 4, Created)
DT   04-MAR-2002 (Rel. 4, Last updated, Version 1)
XX
DE   LINE Danio rerio 1.
XX
KW   LINE; retrotransposon; non-LTR; LDR1; Clone dZ48C11 (AL591172).
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-4963
RA   Jekosch K.;
RT   "LDR1: LINE-like element from Dano rerio.";
RL   Repbase Reports 2(2), 15-15 (2002).
XX
CC   [1] (Consensus)
XX
CC   Putative novel non-LTR LINE-like retrotransposon.
XX
SQ   Sequence 4963 BP; 1628 A; 764 C; 1017 G; 1554 T; 0 other;
     atgcatggaa cggctaaata tttaaaaata atatcctgga atataaatgg ttctcataat        60
     ccagttaaaa gaagaaaatg gttaggttac cttaaatcta aagatgtgga cattgcttta       120
     attcaagaaa cgcatatgat gggtacagag gctgaaaaac ttaaacgtga ctgggtggga       180
     caggtgttta ataattcata taatagtaag aggaatgggg tagcaatatt ggtgcataag       240
     agggtaaatt ttgtcatgat taaacaaaaa aaaggatgag gagggaagat ttatatggtt       300
     ggaagccatg gttgatgatc aaaaagttaa tatttgcaat atttattctc caaataagga       360
     ggatagtgta ttttttcata cggttaataa gataattgga gtacaagcag gtaatcagtt       420
     aatagttgca ggttatttta atcaggtgca agatgcctat ctggatagaa caacctacca       480
     taaaaatatg cccagagaca gattagctat acaattaatg atggaagatt tggggttggt       540
     ggacatatgg aggcttgtca atcctagaga aagagagagt ataccttctt ttcacatagt       600
     cataaatctt acccaagaat agattacttt ctggtttctg gtgatttagt cgagtcagta       660
     gtagactgta agataggcgt gattgctttg ttagatcacg caccagtgga gatgacatta       720
     gacaccaatt ctaggacaat aaaacaaaac agatgaagat tcaatatatc cttgcttcag       780
     gacttaaatt ttagtacaaa attgggagct gacttaaagg aattttcgag attaatgttg       840
     gtaccacaga gaggctggga acagtatggg aatcatcaaa agcttatgtc aggggtaacg       900
     caatacaata tgctagcttg gtaaaaagac tcaacaagga aaaagttaag gacatttagg       960
     ccagaattaa agttttagac aggcaattat cactaaagtt tacagatagt attttaaaac      1020
     aagtctgcaa tctgaaatat cagcttaatg atatttaaaa taggaaagca tagtatgcaa      1080
     tgtttaggat gtgcacagct ttctatgaaa gtggagaaaa ggctgataaa ttgttagcaa      1140
     ggcagttgaa acaaaaggat gctagtttct taatttcagc ttttaaaaat aaaaaaaatg      1200
     aagtggtgac tgcaaacatg gacattaata atgtctttga aaagctttat aataaattat      1260
     atgaagcaga gtcatcccca gactgtacta aatatagaga ttttttctcc aaaattacac      1320
     ttcccacctt gtcctcagac cagcttgaga tgttagatgc gccaatagaa gaatctgggc      1380
     tgcaataatg tcaataaagg ccgctaagtg agcaggttta gatggctttc ctgccgaata      1440
     ttataagaag tatattgaca ttgttgcacc aatattggaa ggggtgtata aagaaacctt      1500
     gttactggag caaatgcccc caacatttaa tgatgcgcta attacgttaa ttcttaaaaa      1560
     ggataaggat ctttatgatc ctgggagtca tagaccagtt agtttagaaa atgttgattg      1620
     taaaatttta tctaaagtat tagcattgag gttggagggc attttatcca atatcgtata      1680
     tatcgaccag gtacgtttta taaaagggag atcttcttct gataatcttc ggtcactact      1740
     tcatctcatc tggcaaagcc gcaatgagaa tgttccagtc gctgcttttt gactagatgc      1800
     gatgaaggca tttgatagag tagaatgggg ctatttaact tatacgttac aaatgtttgg      1860
     ctttgggcca acttttttta agtgggtcaa ggtgctatat tccggcccac gtgcagctgt      1920
     tcttacaaat ggcattattt ctcctttctt taaattaaag cgaggcacca gacaagggga      1980
     ccccctgtct cctttgcttt ttactttgtt tctggagccc ttagcagttg caatcaggaa      2040
     tgacataaga gtgaatggtg tccatttagg agagagggaa tataagtgtt ttttatatgc      2100
     tgatgatatt cttctcttgc tttcaaatcc aagtacatct atacctgctg tgatggatac      2160
     tattgaacat ttttctcaaa tatcaggtta caaagttaat tgggtaaaat ctgaggtaat      2220
     gccagtgtct gtgggatgtt cgttggcgga tgtgagtgct ttctccttta aatggatatc      2280
     aactgggatg aagtatttag gtattaggct ctcaagggag ttgtatgaag ttgttcagat      2340
     gaatataacc cgtatgcttc aaaatgttag tacaaacttt gataaatgga aagtgttaaa      2400
     tttgtctttg tgggggaagg ttaatgcaat taaaatgatg gtatcatcaa ggattaatta      2460
     tatctctata atgatccctt tgaagtttcc tttatacatc tttaagaaat acaatcagct      2520
     agttaaggac tttctgtggg agggaagaag cccagaataa gtatgaaaaa tatgtttacc      2580
     actagaataa aggggggttt ggcattgcca aatatagagc tttataatac tgcatttgag      2640
     atgattaaaa tatgtaaaca ctggtcaggt gataatgtag agggtataag ctggatcgaa      2700
     ataaagaaaa cgctaacttt cccattcagt gttattgatg ctttatctca gaaatcttta      2760
     tattctatta tgaatgggga agttaaccct atactggaac actcatagca ggtctggaaa      2820
     aaaatacata agatgtttaa tttgtcccat tataaacaat gcttttcttc attatggaat      2880
     aaccctgcta ttaagatata tgcaccattg tggaggatag tagcatctgt gtgcaagtcc      2940
     aatataaact aaggttagct gatgctgtgc agcatcttct tttgtttaaa agtaactgtg      3000
     tagttacaaa tacagtgaaa atctgtttgc tagttatacg tacatgaaca cattagtgca      3060
     ttgaatgact ttacgttttt gtgagctaaa ctgggctttt gtgaactaag cattatatca      3120
     gttgatgtaa tatgtttttt tttctgtaaa tttaaacaat cctataaact ttcgtatttt      3180
     tacagaaaat tcctgacaac cactgccggt atttttcagt aaatttaaca gatttttttt      3240
     agcagtgtaa ataaattaga gctaaattat aaatgttgtg ttgattgaac taaacaacat      3300
     taccttacct ttatttaact aacttaagtt cactcaatta aatattcttt ctttaaggca      3360
     gaaatattct ttctttcaaa gtctaagaca gtgggcctcc cttttgacac agcttatcca      3420
     ttggcgtccc cctcctccca aacacgcacg cacacacacg cgcacacgca cacacgaaaa      3480
     attccggatg ttttcctgct acctcatcat gcttggtttc aaggtgtcgc cgaagtttag      3540
     cgggactcat agccaaaata tcttgaaaaa ccacacataa aagtcgtggt tcatcagctg      3600
     gtcctgtcca cgtaaatcct aaactcaaat actgatcatc atattgtcgt cttttgggtt      3660
     taagccctga acttgaaggc tttgaatcgg ggggtctcag aaactgatcc attgtattgg      3720
     caggcatata cctgtattgg cgggcttgcc aaacagaagc aaattcacag ctatggccat      3780
     ctgggtaaaa aaggttttct tatttttgac gtataatttt ttttagcttt gtttaattaa      3840
     aatgtttaaa aataataaaa atacatataa taattaaact taataattat gtttttatta      3900
     tataatattt ttcccgcgca tcccctaaca tgctctggcg cccaccaggg aatgcgcctc      3960
     acactttgaa aacccctgtt ttaaggtaac ttaactcggt tacgtggaac ctgttgacat      4020
     aacaaagtta attaaagcca gcatatcatt tttttgagtg taggaaagaa aacagtctat      4080
     tggaaggatt ggtgtaaaaa aaaaggcctg aaaacagttg atgatttata tggacaaggt      4140
     gcactgtatt catttcagga gttgaaagac aaatttaatc tagtagataa aggggatttc      4200
     tggaaatata tacagctgca tagtagtata agaactgtgg gatataagcc aggagcagaa      4260
     gaaaatgttt tattagggtt tctaaatatg ccaaagtcga tgcaaaccac atcttttgtt      4320
     tataagattg ctgcatgtat ggaaaaagtg atcatttaaa aattatctgg gagaaagacc      4380
     tggaggtgga atttgaagag ggtgaatggg aggcagtagt ttctggtcgt gggggtactg      4440
     tgagagatgt taggagtaaa ctcatacatt acaagataat taatcaatat tactagacac      4500
     cagtaagact gcataggata ggattaaagg aaaataatca ctgttggaaa tgtggtcatt      4560
     ctgtgggcac ttttttacat ttaatgtgga gctgtcattt ggtggctcca ttctggacaa      4620
     gagttattca aaacctagag aaatggctag gacaaccttt accttattcc ccaagagtct      4680
     gtcttcttgg tgatacatcc actttacaga acggaatatc taaaacacag gctggactag      4740
     tcgtcgcagg atatattatt gctgtgagac tggtgctgcg aaattggaag aactcagaca      4800
     ctccctcttt taaagattgg attgagctga tgacttctaa tgcatcatat atgaacgtat      4860
     gttggcaaga cttcaggatt ccacccatac ctttaatcag aaatggggta gctttttgca      4920
     atatttggag agcacataaa aagaaaattg aaaagttgtc aat                        4963
//
ID   Tc1-1_DR    repbase;    DNA;    ZEB; 1625 BP.
XX
AC   .
XX
DT   07-DEC-2004 (Rel. 9.11, Created)
DT   07-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Tc1-1_DR, an ancient Tc1 transposon reconstructed from its
DE   deffective copies present in the zebrafish genome.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Prince; TXr;
KW   TC1; Tc1-1_DR; TC1/mariner superfamily; transposase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-1625
RA   Kapitonov V.V., Jurka J.;
RT   "Tc1-1_DR, an ancient family of Tc1 transposons identified in
RT   zebrafish genome.";
RL   Repbase Reports 4(11), 303-303 (2004).
XX
CC   [1] (Consensus)
XX
CC   Tc1-1_DR is an ancient family of Tc1 transposons that was
CC   active in the zebrafish genome more than 10 million years ago.
CC   The zebrafish genome harbors several thousand copies of
CC   Tc1-1_DR elements that are ~85% identical to their consensus
CC   sequences; all copies are severely damaged by mutations. The
CC   Tc1-1_DR consensus sequence encodes the 340-aa Tc1-1_DRp
CC   transposase (pos. 376-1395). Tc1-1_DR elements are
CC   characterized by the TA target site duplications and 210-bp
CC   terminal inverted repeats. The Tc1-1_DR consensus sequence is
CC   ~90% identical to Tc1 elements present in frogs (TXr from
CC   Xenopus laevis, Prince from Rana pipiens). Presumably,
CC   independent multiple events of horizontal transfer were
CC   involved in evolution of these transposons in vertebrates.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Tc1-1_DRp"
FT                 /translation="MPRSKEIQKQMRKKIIEIYQSGKGYKAISKALGLQRT
FT                 TVRAIIYKWQKHGTVENLPRSGRPTKITPRAQRQLIQEVTKDPTTTSKELQ
FT                 ASLASVKVSVHDSTIRKRLGKNGLHGRVPRRKPLLSKKNIKARLSFARKHL
FT                 DDPQDFWENTLWTDETKVELFGRCVSHYVWRKSNTAFQKKNIIPTVKCGGG
FT                 SVMVWGCFAASGPGRLAVINGTMNSAVYQNILKENVRPSVSDLKLKRTWVL
FT                 QQDNDPKHTSKSTSEWLKKNKMKTLEWPSQSPDLNPIEMLWHDLKKTVHAQ
FT                 KPSNVAELQQFCKDEWAKIPPQRCNRLIASYRKCLIAVVAAKGGPTSY"
XX
SQ   Sequence 1625 BP; 550 A; 326 C; 326 G; 423 T; 0 other;
     cagtggtgtg aaaaagtgtt tgccccttac tgatttttta tttttttgca tgtttgtcac        60
     actttaatgt ttcagatcat caaacaaatt taaatattag tcaaagataa cacaagtaaa       120
     cacatcatgc agtttttaaa tgaaggtttt tattattaag ggaaaacaaa atccaaaact       180
     acatagccct gtgtgaaaaa gtgtttgccc cctgttaaaa cataacttaa ctctggttta       240
     tcacacctga gttcaatttc tctagccaca cccaggcctg attactgcca cacctgttcg       300
     caatcaagaa atcacttaaa taggacctgc ctgacaaagt gaagtagacc aaaagatcct       360
     caaaagctag acatcatgcc gagatccaaa gaaattcaaa aacaaatgag aaagaaaata       420
     attgagatct accagtctgg aaaaggttat aaagccattt ctaaagcttt gggactgcag       480
     cgaaccacag tgagagccat tatctacaaa tggcaaaaac atggaacagt ggagaacctt       540
     cccaggagtg gccggccgac caaaattacc ccaagagcgc agcgacaact catccaagag       600
     gtcacaaaag accccacaac aacatccaaa gaactgcagg cctcacttgc ctcagttaag       660
     gtgagtgttc atgactccac cataagaaag agactgggca aaaatggttt gcatggcaga       720
     gttccaagac gaaaaccact gctgagcaaa aagaacataa aggctcgtct cagttttgcc       780
     agaaaacatc ttgatgatcc ccaagacttt tgggaaaata ctctgtggac tgacgagaca       840
     aaagttgaac tttttggaag gtgtgtgtcc cattatgtgt ggcgtaaaag taacaccgca       900
     tttcagaaaa agaacatcat accaacagta aaatgtggtg gtggtagtgt gatggtctgg       960
     ggctgttttg ctgcttcagg acctggaaga cttgctgtga taaatggaac catgaattct      1020
     gctgtgtacc aaaatatcct gaaggagaat gtccggccat ctgttagtga cctcaagctg      1080
     aagcgaactt gggttctgca gcaggacaat gatccaaagc acaccagcaa gtccacttct      1140
     gaatggctga agaaaaacaa aatgaagact ttggagtggc ctagtcaaag tcctgacctg      1200
     aatccaattg agatgctgtg gcatgacctt aaaaagacag ttcatgctca aaaaccctcc      1260
     aatgtggctg aattacaaca attctgcaaa gatgagtggg ccaaaattcc tccacagcgc      1320
     tgtaacagac tcattgcaag ttatcgaaaa tgcttgattg cagttgttgc tgctaagggt      1380
     ggcccaacca gttattaggt ttaggggcaa acactttttc acacagggct atgtagtttt      1440
     gtattttgtt ttcccttaat aataaaaacc ttattttgaa aactgcatga tgtgtttact      1500
     tgtgttaata tctttgaata tatgactaat atttaaatta gtttgatgat ctgaaacatt      1560
     aaagtgtgac aaacatgcaa aaataagata aatcagtaag ggacaaacac tttttcacac      1620
     cactg                                                                  1625
//
ID   L1-2_DR     repbase;    DNA;    ZEB; 5496 BP.
XX
AC   AL645691;
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   L1-2_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   L1 clade; L1-2_DR; Non-LTR retrotransposon; endonuclease;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-5496
RA   Kapitonov V.V., Jurka J.;
RT   "L1-2_DR, a family of non-LTR L1-like retrotransposons from
RT   zebrafish.";
RL   Repbase Reports 2(7), 22-22 (2002).
XX
DR   Genbank; AL645691; Positions   96682   91187.
XX
CC   L1-2_DR is a family of L1-like non-LTR retrotransposon. This
CC   family was active recently (ORF1 and ORF2 have two stop codons
CC   only).
CC   The element is incomplete (its ~100-bp 5' terminus is deleted).
CC   It encodes two proteins:
CC   469-aa L1-2_DR1p (positions 1-1407) and 1280-aa L1-2_DR2p
CC   (positions
CC   1513-5353). These proteins are most close to corresponding
CC   proteins
CC   encoded by other L1-like elements.
CC   KIKRRFYPGTNIEDGTRFVKTRFPKELASLPYSTRIETAEGPQYFRVMHSH*VKTCRLCLSPDHVVKDCP
CC   DFRCYKCEERGHFAKFCTAVKCPDCNKVLNKCECWIGEEEEEVEQQVGRQMYEGDNIQSEDKTTTQEKST
CC   ESESEKLQENETNGIDRVTEQEGTTWTQMDMTDSLKSVLEAAELSDSNNKDLNQGQQEDTFWTQMDITDS
CC   FQKALDTEETKGQSNDEQADLEGHLQKDGNKETQGKSAKRRRSLKINLI.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..630
FT                 /product="L1-2_DR1p"
FT                 /translation="YIPGSVWLQLVREAHQIFFVYFCFCLKYIFVKLFFVC
FT                 LVCPPSSVSCSGGVFFIYLFFFAMDGSTVTDLAMADGVEKANDNGLDRRQQ
FT                 ETNQSEKEARKRIYLKEATVTVDIGQATEVRAIDVIKAETERIGDGKILAV
FT                 RPKHNKEYEVTLEREEDADELMDELTIKGINCAVKRLQNRDYVVSFMHLPV
FT                 YVADKDILDKLDHWGVCPIS"
FT   CDS           0..0
FT                 /product="L1-2_DR2p"
FT                 /translation="MNVFMSFMNVFIFFMVLGIVSFNARGLLDIRKFEKVK
FT                 EMCKREDVILLQETNWREECMKEIRKRWSGEMLYNNGDGRLGRGVAILLKE
FT                 NSGVLCKTIYNDKEGKCMICEMEYVKKKVIMVNVHAPTEENKKKEYYNVLR
FT                 DYLKKHERVIIMGDFNTVFSKLEMAEGMVFKTDKGRKELKILMEEMNLIDV
FT                 WRERNEQTKEYSRRQIVGNFCCQTRIDFILCTRNVEGFINKIKYEETSLSD
FT                 HKPLFMKLDWSNVKRGPGVWVLNTAVLKNEDYVLSVKEIIQKEKGNEIYNE
FT                 DKRMWWENVKYLVKKFTIKYCRQLQNCKKYKEKELKEKLENELKNENGKNI
FT                 QKIKELQGRLNEMEEEKFEGARLRSKAKFTVEGEKCTKFFFDLEKRRGKSE
FT                 MIREIRSKNGNVVEQHEEILEEIRSYYEKLFCTEGIKEKEKGELLNLIKSR
FT                 VEEGEKRECDEEIREEEIKRAISGLNKKKSPGIDGLGSEFYIVFKDILSSI
FT                 LKEVYDEIFENGEINKRMGMGLMKVIYKGKGDKVDLKNYRPITMLNTDLKI
FT                 LAKVLANRLKEVMPSIIKTNQAYSIKGRDIADTTMSIKDTIRYINDKQKDG
FT                 FLISLDFEKAFDRVEHDFLFGVLKSFGFGENFIKWVQILYRGAVTRIKCNG
FT                 FLTDCFKIRRSIRQGCPLSALLYALVAEPLGLAVKHEDRIKGIEVEGGVNK
FT                 IFQYADDTTLILQDLASVKQAMETVQHFCKGSGAKINENKTGYLRFGRTEA
FT                 LSGHFTFKEMDEIKILGIVIGRDEKKAEVTMWEEILGGIERRLRFWKLMSL
FT                 TLKGRVLILSVLMVSKLWNILYVSSMPLWMEKRLKQCFLDFLWEGKPPRIA
FT                 YATLIGEVGKGGLGLIDVEQRKNSLRVKMVRKYLDEDNKAAWKRTMEYFLS
FT                 KSGNFNMGDNILYMRMKKFMTEGLPDFYKELIGAWGKFLTCVHFNIQGREN
FT                 ILNQPLFLNSGILNQEKVVFFRKWWEVGITRVRDVLYEFKEGFLPVQYVID
FT                 VMDEAKEDFNRQDLIKEYDIIKNAIPAEWLTRIENMEENKQSKDVIVRFGE
FT                 KWWNLKDSTVKMIYGFFRDGVFKKPRANENWIRMFKDVNEDNIWANIKGKL
FT                 VQSKVENLEYLIRNKAVFTDIILNKIGMEESVTCKVCQDADEGFLHLFLYC
FT                 NELKDFNEKCKSIILTLKGERDDELEWEKVLMLGVNKECNNEKLINLLVML
FT                 RKSAIWERRVAAKKEKAVLDVWNVFKRKVEKYVECLFYYFKLEDMQEAFYD
FT                 VFTQEVSKILNDTGMKMPF"
XX
SQ   Sequence 5496 BP; 2128 A; 527 C; 1367 G; 1474 T; 0 other;
     tacattccag gaagtgtttg gctgcagttg gtgagagagg ctcaccagat tttctttgtt        60
     tatttttgtt tttgtcttaa atacattttt gttaaacttt tttttgtttg tttagtttgt       120
     cctcccagca gcgtgagctg ttcgggagga gtgtttttta tttatttatt tttttttgca       180
     atggacggat ctacggtgac agacctggca atggcggacg gagttgagaa ggcaaatgac       240
     aatggactgg acagacgaca acaagaaaca aaccaatcgg agaaggaagc aaggaaaagg       300
     atttatctaa aagaagcaac tgtaacagtg gacataggac aagcaacaga ggtgagagca       360
     atagatgtaa ttaaagcaga gacggagagg attggggatg gaaagatttt ggccgtaaga       420
     ccaaaacaca acaaggaata tgaagtaaca cttgaaagag aggaagatgc tgatgagtta       480
     atggacgaat tgactattaa agggataaac tgtgcagtta agaggctaca aaaccgtgat       540
     tatgttgtct ccttcatgca tctgcctgtc tatgttgctg ataaagatat tttagacaaa       600
     ttggatcatt ggggagtttg tcccatttca aaaattaaaa gaaggtttta tccgggcaca       660
     aatattgaag atgggacgag gtttgtgaaa accagattcc ccaaagaact ggcgtccctc       720
     ccgtacagca caagaataga gacagcagag ggtccacaat actttagggt gatgcacagt       780
     cattaggtga aaacatgcag gctgtgcttg agcccagatc atgtggtaaa agactgtcct       840
     gattttaggt gctataagtg cgaggaaagg gggcactttg caaagttttg cactgctgta       900
     aagtgcccgg attgtaataa ggttttgaat aaatgtgaat gttggattgg ggaagaggag       960
     gaggaggtag agcagcaggt gggcaggcag atgtatgaag gagacaatat ccagtcggag      1020
     gacaaaacaa caacacaaga aaaaagtaca gaatctgaaa gtgaaaaact acaagagaat      1080
     gagactaatg gaatagacag agtcacggaa caggaaggga caacatggac acaaatggat      1140
     atgactgaca gtttaaagag tgttttggaa gcagcagaat tgagcgattc gaataataaa      1200
     gacttgaatc aaggacaaca ggaagacaca ttttggacac aaatggacat cacagacagt      1260
     tttcaaaagg cattggacac agaggagaca aaaggccaaa gtaatgacga gcaagccgat      1320
     ttagagggac atttacaaaa ggatggaaac aaagagacac aggggaaatc agcaaaaaga      1380
     agaagatcgt taaagataaa cctaatttag agactgtaag aaaaaaactg ctaaaagatg      1440
     aagaaattga atgcgcaaat aagtatgagt tgctaaaggg cttggaagac atggactgag      1500
     atgatgtttt ttatgaatgt ttttatgtct tttatgaatg tttttatatt ttttatggtt      1560
     ttaggaattg tgtcttttaa tgcaagaggg cttttagaca tcaggaaatt tgaaaaagtg      1620
     aaagaaatgt gtaaacgaga agatgtgatt ttacttcaag agacaaactg gagggaagaa      1680
     tgcatgaagg aaataagaaa aaggtggagt ggggaaatgt tatacaataa tggggatggg      1740
     aggctaggga gaggagttgc aattttatta aaagaaaaca gtggggtttt atgtaaaaca      1800
     atctataatg acaaagaggg aaagtgtatg atatgtgaaa tggagtatgt aaagaaaaaa      1860
     agtaattatg gtgaatgttc acgccccaac agaggagaac aaaaagaaag agtattataa      1920
     tgtacttaga gattatttaa agaaacacga aagagttatt atcatgggtg attttaacac      1980
     tgtttttagt aaattagaaa tggctgaggg aatggttttt aaaacggata aggggagaaa      2040
     agaactaaaa atattgatgg aggaaatgaa tttaattgat gtgtggagag aaaggaatga      2100
     acagacaaaa gagtactcaa gaagacagat agtggggaat ttttgttgtc aaacaagaat      2160
     tgattttatt ttatgcacaa gaaatgttga agggtttata aacaagatta aatatgaaga      2220
     aacaagtctg agtgaccata agccactttt tatgaagcta gactggagta atgtgaaaag      2280
     agggccaggg gtatgggttt taaacacagc ggttttaaag aatgaagact atgttttaag      2340
     tgtaaaggaa attattcaaa aggaaaaagg gaatgaaatc tataatgagg acaaaagaat      2400
     gtggtgggag aatgtgaagt atttagttaa aaagtttacg ataaaatatt gtagacaatt      2460
     acaaaattgt aaaaaatata aggaaaagga gctgaaagaa aaactagaaa acgaattgaa      2520
     aaatgagaat ggaaaaaata tacaaaagat taaagaactg caaggaagat taaatgaaat      2580
     ggaggaggag aaatttgaag gtgcaagatt aagaagtaaa gcaaaattta cagtagaggg      2640
     ggaaaagtgc actaaatttt tctttgatct agagaagaga agagggaagt cagaaatgat      2700
     tagagaaata aggagcaaaa atgggaacgt agtagaacaa catgaggaga ttttggaaga      2760
     aataagatca tattatgaga aattgttttg cacagaggga ataaaagaaa aagaaaaagg      2820
     ggaattacta aatctaataa aatcaagagt agaagaaggg gaaaaaagag aatgtgacga      2880
     ggagataaga gaagaagaaa taaaaagagc aattagtgga ttaaacaaaa agaaaagtcc      2940
     aggaatagat gggttgggaa gtgaatttta tattgttttt aaagatattt tatctagtat      3000
     tttaaaggaa gtatatgatg agatttttga gaatggtgag ataaataaaa gaatggggat      3060
     gggcttaatg aaggtgatat acaaaggaaa gggggataaa gtagatttaa aaaactatag      3120
     acctataaca atgcttaata ctgatttgaa gattttagcc aaagttttgg ctaatagact      3180
     aaaagaagtg atgccaagca taataaaaac aaaccaagca tatagtataa aaggacgaga      3240
     cattgcggat acaactatga gtattaaaga cacaattaga tatataaatg ataagcagaa      3300
     agatggtttt ttaattagtc tggacttcga gaaagctttt gatagggtgg agcatgactt      3360
     tttatttgga gtgttaaaga gttttggttt tggggaaaat tttataaagt gggttcagat      3420
     tttatataga ggagcggtaa caaggataaa atgcaatggg tttttaacag actgttttaa      3480
     gataagaagg tcaatcagac agggttgtcc gttatctgca cttttatatg ctttagttgc      3540
     agaaccactg ggattagctg tgaagcacga ggacagaata aaaggaatag aggtagaggg      3600
     gggagtgaat aaaatatttc aatatgctga cgataccaca ttaatactac aagatctggc      3660
     aagtgtaaag caagcaatgg aaacagtaca gcatttttgc aaggggtcag gggctaaaat      3720
     aaatgaaaat aaaacagggt atttgagatt tgggagaact gaggctttat ctggacattt      3780
     tacttttaag gaaatggatg aaataaaaat tttaggcatt gtaattggga gggatgaaaa      3840
     gaaagcagaa gtaaccatgt gggaggaaat tttaggaggg attgaacgga ggctgaggtt      3900
     ttggaaatta atgtctttaa ctttgaaggg gagggtttta attttgagtg ttttaatggt      3960
     ttctaaatta tggaatattt tatatgtgtc atcaatgcca ctgtggatgg aaaaaaggct      4020
     gaaacaatgt tttttagatt ttttatggga agggaaacct ccaagaatag catatgcaac      4080
     gttaattgga gaagtaggca aagggggtct aggtttaata gacgtggagc aaagaaaaaa      4140
     cagtttaaga gtaaaaatgg taaggaaata tttggatgaa gacaataagg cagcatggaa      4200
     aagaacaatg gaatattttt taagtaaaag tggcaatttt aatatgggag ataatatttt      4260
     atacatgagg atgaaaaaat tcatgacaga gggtctacca gatttttata aagaattgat      4320
     tggagcatgg ggaaaatttt taacttgtgt acattttaac atacaaggac gcgagaacat      4380
     tttaaatcag cctttattct taaacagtgg cattcttaat caagagaaag tggtgttttt      4440
     taggaaatgg tgggaggtgg gaataacaag agtaagggat gttttatatg aatttaagga      4500
     aggattttta ccagtacagt atgttattga cgtaatggat gaagcgaagg aggattttaa      4560
     cagacaagac ttaataaagg aatacgacat aatcaaaaat gccatacctg cagaatggtt      4620
     aacaagaata gaaaatatgg aagaaaataa acaaagtaaa gatgtgattg taagatttgg      4680
     agagaaatgg tggaacttga aagatagtac tgtgaaaatg atttatgggt tttttagaga      4740
     tggggttttt aagaaaccgc gtgcaaatga gaactggata cggatgttta aagatgtaaa      4800
     tgaagacaac atatgggcta atataaaggg caaattagta cagtcaaaag tggagaattt      4860
     ggaatatttg atcagaaata aagcagtttt tacagatata attttaaaca aaatagggat      4920
     ggaggaaagt gtcacatgta aagtatgtca agatgcagat gaaggattct tacacctgtt      4980
     tttatattgt aatgagttga aagattttaa tgagaaatgc aaaagcatta ttttaacttt      5040
     gaaaggagaa agagatgacg aacttgagtg ggaaaaggtg ttgatgttgg gagtgaacaa      5100
     agaatgtaat aatgaaaagc tcataaattt actggtgatg ttaaggaaaa gtgcaatatg      5160
     ggagagaaga gttgctgcaa aaaaggaaaa agctgtatta gatgtgtgga atgtatttaa      5220
     gaggaaggtg gagaaatatg ttgaatgtct gttttattat tttaagttgg aggacatgca      5280
     ggaggctttt tatgatgttt ttactcaaga agtttcaaag attttaaatg acacaggaat      5340
     gaaaatgcct ttttaaaaat gtgattatac cctttaagga gttctacttg caacatttta      5400
     tatttaaaat gttttattgt gaagatatga tgtaataagg acctttttaa tgttttgtct      5460
     gaagtgaaat atgtataaat aagtgaattg taaaaa                                5496
//
ID   DIRSDR1     repbase;    DNA;    ZEB; 4714 BP.
XX
AC   AL590134;
XX
DT   04-MAR-2002 (Rel. 7.02, Created)
DT   04-MAR-2002 (Rel. 7.02, Last updated, Version 1)
XX
DE   DIRS-1 Danio rerio 1.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1; DIRSDR1;
KW   non-LTR; retrotransposon.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-4714
RA   Jekosch K.;
RT   "DIRSDR1: putative non-LTR retrotransposon.";
RL   Repbase Reports 2(2), 9-9 (2002).
XX
CC   [1] (Consensus)
XX
CC   Putative novel non-LTR retrotransposon similar to Distyolstelium
CC   DIRS-1
CC   with one ORF (pos. 1-1252, 1446-3125 and 3356-4714).Exon 1
CC   is similar to GAG proteins, exon 2 to reverse transcriptases and
CC   exon 3
CC   to Lambda recombinases.
XX
SQ   Sequence 4714 BP; 835 A; 1501 C; 1346 G; 1032 T; 0 other;
     atggcgctcc gactgtgcgt ttctggatgc gggggtttcc tgtctccgga tgatggacac        60
     gatcactgca ttgcatgttt gggggtccag catgttaatg cggtgctcgc gggcggttca       120
     tgtcgtcatt gcgatgccat gaccgttgca cagctaagat cgcggctaac tttcgcaaga       180
     gagcgagcca ccccagttgc ctcctgttct aaaaaagcag cgggcgctcg ggcagatctg       240
     agggtttcag cgggagctaa tccgccgccc acgggctcgc ggacctctcg ctcctcacgg       300
     cgctccatcc aagcttcggg tggtgagagt gatccgtcta accagatggt agctctcaca       360
     ctcgctgaca ccggagatca gatgtcctcc gcggcatcgg agggtgggct ttcactgtcc       420
     gacgaagatc cggacccgct cgccccctcc gggcaggtga gcgctgtcaa atcggatcct       480
     gaagcggaca tgttagccgt gctttcccgg gctgcttcgg ccgtggggtt ggagatggtt       540
     tatcccccag ctccgcggcc ggaccgacta gatgggtgct acgtagagga caagaaggcg       600
     aagccttcga agcctctcgt ccccttcttc ccggaagtgc acagtaggct cacgcagtcc       660
     tggagggcac ctttctctgc ccgtgctgcg agtgcctccg ccctcaccgc ccttgacggc       720
     ggagctgcca gggggtatga ggcgatcccg tcagtggagc gcgctatcgc ggtcaatctt       780
     tgtccgcgcg gcgcctctac gtggcggggt ttgccccgcc tcccgtccaa agcctgtagg       840
     ttgtctgcct ccctcggagc cagagcttat aaggctgcgg gccaggctgc ttctgctttg       900
     cacgcgatgg ccacctacca gcgctaccaa gcgcaggcgc tggccgagct gcacgagggc       960
     gggtccaacc caagcttatt acatgagctg cgcaccgcga ccgactatgc tcttcggact      1020
     actaagtccg ccgcgtgtgc gctggggagg acgatgtcca cacttgtggt tcaggaacgc      1080
     cacctctggc taaacctggc cgatatgcgc gacgttgaca aagttcgctt tcttgactcg      1140
     cccatatccc aggctggcct gttcggcgac accgtcggtg aattcaccca ggaattcaag      1200
     gcggtgaaag agcagtcgga tgcgatgggc aatgtcatct atcggcgtgg ccgtaagccc      1260
     gctccgcccg ccgagccatc cacctccgct gttcctcgcc gagggcgccc gccaacgagt      1320
     gctgccccgc ccccgcctgc gcctccggcc aagcgggcgc ggcgttcacc tcgaaagcag      1380
     gcagcccctc ctgcccaggg cgccgttaag tccggtaaac ggaccgcgaa gcgtccctga      1440
     gacaggccat ccggagaaga ggaaacttgc tctttccccg ctggagggcg gggccccgat      1500
     aacaacggta cttttcagtg ccaccaaaac atcagtaaaa gagcactttt tcccttcccc      1560
     ggatgtgact gcacgagttc tgccagtccg ggacgcgctg ccttccggct cgcagactct      1620
     acgtgcttcg ccagtggctc acgagcgctg gggggacggt ctcccttccc tcagccctcc      1680
     agccccctct ccggagtcag ggtgcggagc cagagcgaat cactctcctc cagcttttcc      1740
     gcgggaccct cgtgcttccc ggatcagcac acccactccg cgctgcccca ccgctggtac      1800
     gtcagcgatt gtagcgatga ctccattagc gagggctctg cctgcctggt tagcgcgggc      1860
     cagcccctcg cggtggctca tacgcacaat cagactcggt tacgcgattc agttcgcgaa      1920
     acggcccccc aagtttacgg gcgtgtattt ctccagggtc aaccccctgt ccgcccctgt      1980
     cttgcgagag gagattgctg ccctcctggc gaagggtgca atcgagccgg ttcctccagc      2040
     cgagatggag agtgggtttt acagcccata cttcatcgta cccaaaaaga gcggtgggtc      2100
     acggccaatc ctagatctgc gcgttttgaa ccgctgtctg cacaagctgc cgttcagaat      2160
     gctcacgcag aggcgcattc tccaatgcgt tcgtcctcgg gattggtttg cagccataga      2220
     cctgaaggac gcgtatttcc atgtctccat tcttccacgc caccgccaat ttctgcggtt      2280
     tgcgttcgag ggtcgagcgt ggcagtacaa ggtcctcccc ttcgggctct ctctgtctcc      2340
     gcgggtcttc accaaactcg cggagggtgc cctagcgccc cttcggctcg cgggcattcg      2400
     catactcagt tatctcgacg actggctgat tttagcccac tcgcgggagc aattgattat      2460
     gcacagggac gaggtgcttc ggcatctccg cctactgggg cttcaggtca accgagaaaa      2520
     gagcaaactc gcccccgtgc agaggatttc ttttctcggg atgaagctgg actcgatcac      2580
     catggtagcg cacctctccg aggaacgcgc tcgcctgttg ctgaactgtc tgagggagct      2640
     cgacagcaaa ctagtggtcc cactgaagtt ctttcagagg ctcctggggc atatggcatc      2700
     cgcagccgcc gtcacgccgc tcgggttgct ccatatgaga ccacttcagc actggcttca      2760
     cgatcgggtc cccagacgcg catggcacgc gggcacacac cgggtctcgg ttactgcgct      2820
     gtgtcgccgc gccctcagcc cttggaacga cccctcgttc ctacaggccg gtgtgcctct      2880
     aggacaggcg tccagccatg ttgttgtttc aacagacgct tccaacacag gttggggggc      2940
     cgtgtgtcgc gggcatgcgg ctgcgggcct ctggaagggt gcccagctgc attggcatat      3000
     caatcgccta gagctgttgg cagtgttcct cgctctccac cgctttttac cggtgctgga      3060
     gcggcaacac gtgctggtca ggacggacag tacggcagcg gcggcgtata tcaaccgcat      3120
     ggggggtatg cgctctcgcc gcatgtctca gctcgcccgc cgtctgctcc tctgtagtca      3180
     cccgcggctg aaatcgctgc gcgccattca cgtcccaggc acgctcaatc gtgcagccga      3240
     tgcgctctca cgacagctgt tatgccctgg agaatggaga ctccaccccg agtctgttca      3300
     gctgatatgg gcgcgattcg gggaggccca gatcgatctg tttgcttccc ccgagaacgc      3360
     tcactgccag ttgttttttt ccctgaccga gggctctctc ggcacggatg cactggccca      3420
     cagctggcct cggggcatgc gcaagtatgc gtttccccca gtgagcctgc tcgcgcagtt      3480
     tctgtgcaag ggaggacgag gaacaggttc tgctagttgc gcccctttgg cccaaccgga      3540
     cctggatatc agagctctca ctcctcgcga cggccctccc ctggcggatc cctttgagag      3600
     aggacctact ctctcaggga cagggcacca tctggcaccc tcgccccgat ctttggaacc      3660
     tccacgtgtg gtccctagac gcgaggaaga cttaggtaac ctaccgactg cggtggttaa      3720
     taccatcact caggctagag ccccctccac gaggcgcgcc tacgccctga agtggagtct      3780
     attcactgaa tggtgcgtct ctcgcagaga agacccccga aattgccaga ttagtgttgt      3840
     gctctctttc cttcaagaga agttggacag caggctgtcg ccctccactc tcaaggttta      3900
     cgtggccgcc atctccgctt atcatagcgc ggtagctggc ggcaccgtgg gaaagcataa      3960
     cctggtcatc cagttcctta ggggtgctag gcgaattaat ccatctcgcc cccctctcat      4020
     gccctcttgg gatctcgccc tcgttctcac gagtctgcga tccgatccct ttgagccact      4080
     cgaatcagta tctctaagat ttctgtccct gaagacagct ctgctggttg cgttggcctc      4140
     catcaagagg gtcggggacc tggaggcatt ttcagtcagt gactcgtgcc tggaattcgg      4200
     gccggattac tctcacgtta tcctgagacc ccgccccggt tatgtgccca aggttcctac      4260
     cacccccttt agagatcagg tagtgaacct gcaagcgctg cccccggagg aggcagaccc      4320
     agccctttct ttactttgtc cagttcgcgc tctgcgcatt tatgtggacc gtactcagaa      4380
     ttttagatca tctgagcagc tctttgtctg ttatggcggt cggcagcagg gaagtgccgt      4440
     atcgaaacaa agattatccc actggattgt ggatgccatt tcactcgctt attcgagtcg      4500
     aggtcagccg tgtcccccgg gagtacgtgc acactccact cggagcgttg catcctcttg      4560
     ggcgcgtgca cgcggcgcct ctctaacaga catctgtaga gctgcgggct gggcgacacc      4620
     caacacattt gcaaggtttt acaatctgcg agtggagccg gtttcctcaa gggtattagg      4680
     taaccctttg gtgattgagg agacaactcg gtag                                  4714
//
ID   Gypsy-22-I_DR repbase;    DNA;    ZEB; 5713 BP.
XX
AC   .
XX
DT   11-FEB-2005 (Rel. 10.01, Created)
DT   11-FEB-2005 (Rel. 10.01, Last updated, Version 1)
XX
DE   An internal portion of the Gypsy-22_DR LTR retrotransposon - a
DE   consensus sequence.
XX
KW   GYPSY superfamily; Gypsy-22-I_DR; Gypsy-22-LTR_DR; Gypsy-22_DR;
KW   LTR retrotransposon; endogenous retrovirus; gag; integrase;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-5713
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-22_DR, a family of LTR retrotransposons from zebrafish.";
RL   Repbase Reports 5(1), 17-17 (2005).
XX
CC   [1] (Consensus)
XX
CC   Gypsy-22-I_DR is an internal portion of the Gypsy-22_DR LTR
CC   retrotransposon that belongs to the Gypsy superfamily. Its
CC   long terminal repeat is deposited in Repbase as
CC   Gypsy-22-LTR_DR. Gypsy-22_DR is characterized by 4-bp target
CC   site duplications. The internal portion encodes one
CC   polyprotein: the 1686-aa Gypsy-22_DR1p (pos. 605-5662)
CC   composed of the gag, protease, reverse transcriptase, and
CC   integrase domains. The consensus sequence was built from five
CC   copies less than 2% diverged from the consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy-22_DR1p"
FT                 /translation="MAQFFSHSTSTYVDIDAPDAPTISTPVWSPPVQTQTL
FT                 SGLPPHDQIMHNISPVHSFPSHATPVQTLPTALGGHILMQPLSLSQEHVSM
FT                 QLCTSADVSSPSTMEQHDLPGNLPTPRREIQQVSSYVQGNLDNLMVTMKKQ
FT                 EKCLHELTQKLKTSSSQHVNQITTLTAKIESNKQEIVTILTGAKQQEAADA
FT                 DQLVKAVQLMLATEFQKFESTLTSAVVDKVEKLRRDVHHDLKSIQQTLQGS
FT                 LDQLTTNLQQCEEKISKCQTCVTQLKKDLQVHNVKDVEPQTETKAAPVTST
FT                 LSTETVSTLPNTMVKSDHLKLTFPTFGRHTDDTDPLLYLTKCQDFLALHPL
FT                 TDADLLATFRTVLYGTARDWWEVSRSNIATWKEFESAFLSAFLSEDYEDEL
FT                 AERVRTRVQGDRESIRDFAFTYRALCKRWKSTLTETEIVKMILKNIKPYLA
FT                 SQLRSRVNTVEDLVKLGYLLERDYEEQRRYESRMAHKQASSQKSFSNRPVE
FT                 KQPIQCWRCSGPHPPGNCPMYLTPPSQQSSTQHHPNHGKSFHAAKSGGRPT
FT                 NIIVAASETPQSTKEVPNVFLPSTTMSSLAIPQQLVVPISIGSWFGKAILD
FT                 TGASYTLIHESLMQHFDTSAQLQNWSSGPLYLANGKAEIPLGWLNITIQIH
FT                 GKSFVVPAVVLPSQALAYAIILGLDFIFFSGLKIHVSERKYSFTSDPTEEH
FT                 PFQPGYASEPLVKMTPMTEKKTLRKNKLNLTLLSAVPPPQTSLGMLQTDHV
FT                 DDATQIWNAVSEAQLPKEEKQQLLQILQNNPRVCTQRTGKTKLLQHRIYTT
FT                 SQVPIKQKPYRLSPVKQQVMEEQLEQMLREGIVEPSHSSWASPVVLVPKKN
FT                 GKLRFCVDYRKVNAITENDAYPLPNITEILESLSGSTIFSTIDLNSGYWQV
FT                 MMDPDSKAKTAFIVSDGLYQFNVMPFGLKNAPATFQRLMETVLGELRRKIC
FT                 LVYIDDIIVYSPSVTQHFCDLQTILHRLEAAGLTINLEKCKFFLPEITFLG
FT                 HVVNAKGITADPSKVEAILSFPTPNNLKEVQRFLGLAGWYHRFVQNFSKIA
FT                 EPLNALKKKGQVFKWTAQCQQSFDQLRSCLTSPPILGHPDLKIPFIVYTDA
FT                 SDTGLGAILTQRKDPGSEEVIAYASRTLTGAEVNYTATEKECLAVVWALEK
FT                 WQHYLEYKLFTVVTDHSALQWVMGSTKTNSRLIRWVLRLQKFNFIIEYRKG
FT                 KLNVAPDALSRSPLTTISPVTAVYTKQQTDQHTELPVSDVVLWEEQHSDEE
FT                 TTKLLQAVAEEPNQLEQYEVIEDKLYHKTYLKNDQVHYRVYVPNRLRPTLL
FT                 HHYHSHPLSGHHGIYKTYKRIQAVAFWPGLWTDVKRHVKECVKCQTIKYDN
FT                 QKPAGKLQSTITSRPNQMLGVDIMGPLPRSTQQNEYLLVFVDYYSKWVEFF
FT                 PMRQANAQSVAVIFRREILTRWGVPDFILSDRGTQFISSVFKNVCEKWGVT
FT                 QKLTTAYHPQTNMTERVNRTVKSMIASYVDDNHSKWDQFLPEMRFAMNTAI
FT                 QETTGVTPAELQIGRKLHGPMDKILHGQNLIPDNTSYDVVCHIQQLKSQVQ
FT                 ENCRRAQQRQLRNYNKKRREAGFKNKDRVWLRNFPQSSAQHKFSAKLAPKW
FT                 KGPYRVLKQLGPLNYRIALEETGEDVRTVHVCNLKECFPTAEELEVQEKKR
FT                 LRELFEETSEEEEFFGF"
XX
SQ   Sequence 5713 BP; 1818 A; 1219 C; 1139 G; 1537 T; 0 other;
     gaaatggcac ccgaacaggg acatgaacac tttaagggac atgaacactt taagggacat        60
     tgaacacttt aagggacttg aataattgaa actttcattg attgacttga ataactgaaa       120
     atttctttga ctgactgact gacctgaatt actggacagg gttttgtttg tgaatgttta       180
     atagtttaaa attgtttttt tcttgctgaa tgtgagaact attgacaaaa atcatcaaat       240
     aacagaaatt gtgtaaaaaa aaaaaaaaaa aaaaacttgt catgtatgtg gtttttggta       300
     taatgatttg agtttattgt gaaaatttgc ttgagcaacc agtgtaagct gaatttattt       360
     tttgtgtcaa agtgtgtggg aacttgaact agaaaatgtg atcgtcatct gtcttgtatt       420
     tttgtacatg catttgaaag gtttctctta cattgataat atggacatga tgtaattgat       480
     tgcagagaac agtttctttg tgagtatttt ttgttttatt ggggtttttt tttatttatt       540
     tatttttttt cctgctgtcc caaacacaca caaatcctaa tcacacccaa caccaacaca       600
     agtcatggcc cagttctttt cccattcaac gtcaacatat gttgatattg atgcacctga       660
     tgccccaaca atttccacgc cagtgtggtc acctccagtg caaactcaaa cactttctgg       720
     acttccacct catgaccaaa ttatgcataa tatttcaccg gtccatagtt tcccaagcca       780
     tgcaactcca gtacagacac ttcctactgc tctgggaggc catattctaa tgcaacctct       840
     ttctttgtcc caggaacatg ttagcatgca actgtgcacg tctgcagatg tttcatcacc       900
     ttctacaatg gaacagcatg atctgcctgg gaaccttcca acccctagga gagaaattca       960
     gcaggtcagt tcttatgtgc aaggtaattt ggacaatctg atggtaacaa tgaaaaaaca      1020
     agagaaatgt ttgcatgaac ttactcaaaa gctgaaaact tcatcatccc agcatgtgaa      1080
     tcaaatcacc acccttacag ccaaaataga gtccaataag caagagattg tcaccatact      1140
     cactggagct aagcaacaag aggctgcaga tgctgaccag ttggtcaaag ctgtacaatt      1200
     gatgcttgca actgagtttc agaaatttga atcaaccctt acctcagcag ttgttgacaa      1260
     agtggaaaaa ctccggagag atgtccacca tgatctcaaa tcaatccagc aaaccctcca      1320
     gggaagtttg gatcagctta ctacaaatct tcagcaatgt gaagaaaaaa ttagtaaatg      1380
     tcagacctgt gttacacagt tgaaaaagga tttacaagtg cacaatgtga aagatgttga      1440
     acctcaaaca gaaacaaaag ctgctccagt tacaagtaca ctctccactg agactgtttc      1500
     aactttacca aataccatgg tcaaaagtga tcaccttaaa ttaacttttc ccacctttgg      1560
     acgacataca gatgatactg accctttatt gtacctaaca aaatgtcaag atttcctggc      1620
     acttcatcct ttgacagatg cagatctttt ggctaccttt cgcactgtct tatatggcac      1680
     agctcgggac tggtgggaag tgagtcgctc caatattgcg acttggaagg aatttgagtc      1740
     tgcatttctt tctgcattcc tgtctgaaga ctacgaagat gagcttgctg agcgtgttcg      1800
     tactagagtt caaggagaca gagagtcaat tcgagatttt gcatttactt atcgagcact      1860
     ttgtaaaaga tggaaatcca ctctaacaga gactgaaatt gtaaaaatga tcctaaaaaa      1920
     tatcaaacca taccttgcca gccaactgcg cagtagagtg aacaccgtgg aggatctagt      1980
     taaattggga tatctattgg aacgagacta tgaagaacaa agacggtatg aaagtcgaat      2040
     ggctcacaaa caagcaagtt cacaaaaatc tttctccaat cgacctgttg agaaacagcc      2100
     tattcagtgt tggaggtgca gtggtccaca tccaccggga aattgcccaa tgtatttaac      2160
     tccaccttcc cagcaatctt ccacgcaaca tcacccaaac catggaaaga gttttcatgc      2220
     tgcaaagtca ggaggtcgac ctacgaacat cattgtagca gcctcagaaa caccccaatc      2280
     aacaaaagaa gttccaaatg ttttccttcc atctacaact atgtcatctc tggccattcc      2340
     acaacaatta gttgtcccaa ttagtattgg atcatggttt ggaaaagcca tactggacac      2400
     tggagcaagc tacacgctaa tacatgaaag tctaatgcag cattttgata cctctgccca      2460
     gctacaaaac tggtcgagtg gacctcttta cttggctaat ggaaaagcgg agataccctt      2520
     aggatggtta aacatcacta ttcaaataca tggtaaatcc tttgtagtac ctgctgttgt      2580
     cctcccatct caagctcttg catatgccat catcttgggt ttggacttca tattctttag      2640
     tggtctgaaa attcatgtta gtgaacgcaa gtattctttt acgtctgatc ctactgaaga      2700
     acacccattt caacctggat atgcaagtga acctctagtt aaaatgacac ccatgacaga      2760
     aaaaaagacg ctcagaaaga acaaactcaa tctcaccttg ttaagtgctg tccctccacc      2820
     tcaaacctca ttgggtatgc tacaaactga tcatgtcgat gatgcaacac agatctggaa      2880
     tgctgtaagt gaagcacagc ttcccaaaga agaaaagcaa cagttactac agatcctgca      2940
     gaataacccc agggtatgta ctcaaagaac tgggaaaacc aagttacttc aacaccgtat      3000
     ctacaccacc agtcaggtac ctatcaaaca aaagccatat cgtttgtctc ctgtaaaaca      3060
     acaggtgatg gaggagcaat tggaacaaat gttgagagaa ggtattgtag aaccatcaca      3120
     ttcttcttgg gcttcaccgg tggtgttggt tcctaagaaa aatggcaagt taagattctg      3180
     tgtggactac cgcaaagtaa atgcaataac ggaaaatgat gcttaccctc ttccaaacat      3240
     cacagagata ctagaatctc tctctggatc aacaattttt tctaccatcg atttaaacag      3300
     tgggtattgg caagtgatga tggatcctga cagcaaagca aagactgctt ttattgtgtc      3360
     tgatgggcta tatcaattta atgttatgcc ttttggatta aaaaatgcac ctgctacatt      3420
     ccagaggtta atggagaccg tactagggga actaagacga aagatatgcc ttgtctacat      3480
     tgatgacata attgtgtatt ctccctcagt gacccaacac ttctgtgatc tgcaaaccat      3540
     cctccacagg ctagaagctg ctggactgac catcaacctg gaaaaatgca agtttttcct      3600
     accagagatc acgtttctag ggcatgtggt aaatgctaaa ggtatcacgg cagatccgag      3660
     caaagttgag gccattctct cttttcctac acccaacaat ctgaaggaag ttcagcgatt      3720
     cctgggacta gccggctggt accaccggtt tgtgcaaaac ttttcaaaaa ttgctgagcc      3780
     cctcaatgcc ctgaagaaaa aaggacaggt gtttaaatgg acagcacagt gtcaacaatc      3840
     atttgaccag ttaagatcat gccttacctc acctcccatt cttggccacc ctgacctcaa      3900
     aatacctttc attgtataca ctgatgccag cgatacagga ctgggtgcta ttctcactca      3960
     acgaaaggat ccaggtagtg aagaggtcat tgcctatgcc agtcgcacct taactggggc      4020
     tgaggtaaat tacactgcaa cagaaaaaga atgtttagct gttgtttggg cattggagaa      4080
     gtggcaacat tacctagagt acaagctctt cacagtagta acggaccatt ctgctcttca      4140
     gtgggtgatg ggatccacaa aaactaacag ccgccttatt cgatgggtct tgagactgca      4200
     gaaattcaac ttcatcattg aataccgaaa agggaagtta aatgtagctc ctgatgcttt      4260
     gtccagatca cctctcacta caatttctcc tgttacagca gtttacacga agcagcaaac      4320
     agaccagcac acagagcttc cagtttctga tgttgtccta tgggaggaac aacattcaga      4380
     tgaagaaaca acaaaactac tacaggctgt agcagaagaa ccaaatcaat tggaacaata      4440
     tgaagtgata gaggacaagc tgtaccataa aacttacctg aagaatgacc aagtacatta      4500
     tcgtgtgtat gttccaaacc gtcttcggcc gacactactt catcactatc attcacaccc      4560
     gctaagtggc catcatggaa tatacaaaac ttataaacga atccaagcag ttgctttttg      4620
     gccaggctta tggactgatg tgaagagaca cgttaaagaa tgtgtgaagt gtcaaacgat      4680
     caagtatgat aatcagaaac cagcaggaaa acttcaatca accatcacct ctcgacctaa      4740
     tcaaatgctt ggagttgata ttatgggacc cctacctcgg agtacacagc aaaacgagta      4800
     tttgttggtg tttgttgact attactccaa atgggttgag ttctttccca tgcgtcaggc      4860
     aaatgctcag agtgttgctg tgatttttag aagagaaatc ttaacccgtt ggggggttcc      4920
     agacttcatt ctctctgatc gaggaacaca gttcatctca tctgtgttta agaatgtatg      4980
     tgaaaagtgg ggagttacac agaagctaac aacggcttat caccctcaga ccaatatgac      5040
     agaacgggtg aatagaactg tcaaaagtat gattgcgtca tatgtggatg acaaccacag      5100
     caaatgggat cagttcttac ctgagatgag attcgcaatg aatactgcca tccaggaaac      5160
     cacgggagta actccagcag aactgcagat tggaaggaaa ctgcatggac caatggataa      5220
     aatacttcat ggtcagaatc ttatccccga taatacctct tatgatgtag tctgtcacat      5280
     acaacaactg aagtcacaag ttcaagagaa ttgccgaagg gcacaacaac gccaactccg      5340
     aaactacaac aaaaagagaa gagaggccgg tttcaaaaat aaagacagag tatggttgcg      5400
     caatttccct cagtccagtg cacagcacaa gttcagtgcc aagctggcac caaaatggaa      5460
     aggaccttac cgagttttaa aacaactggg acctttaaat tatcgtatag ccttggagga      5520
     aactggagaa gatgtgcgca cagtacatgt gtgtaatctt aaagaatgtt tcccaacagc      5580
     tgaggagttg gaagtccaag aaaaaaaacg acttcgggaa ttgtttgaag aaacctctga      5640
     agaggaggaa ttttttggat tttgattgta tttcttttaa caaccatggg ttgttttgtc      5700
     aaggggggga gaa                                                         5713
//
ID   Gypsy8-I_DR repbase;    DNA;    ZEB; 6655 BP.
XX
AC   .
XX
DT   07-JAN-2005 (Rel. 10, Created)
DT   07-JAN-2005 (Rel. 10, Last updated, Version 1)
XX
DE   An internal portions of the Gypsy8_DR LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   GYPSY superfamily; Gypsy8-I_DR; Gypsy8-LTR_DR; Gypsy8_DR;
KW   endogenous retrovirus; gag; integrase; reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-6655
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy8_DR, an LTR retrotransposon from zebrafish.";
RL   Repbase Reports 4(12), 321-321 (2004).
XX
CC   [1] (Consensus)
XX
CC   Gypsy8-I_DR is an internal portion of the Gypsy8_DR LTR
CC   retrotransposon that belongs to the Gypsy superfamily. Its
CC   long terminal repeat is deposited in Repbase as Gypsy8-LTR_DR.
CC   Gypsy8_DR is characterized by 4-bp target site duplications.
CC   The internal portion encodes two proteins: the 622-aa gag-like
CC   Gypsy8_DR-1p (pos. 93-1958) and 1557-aa pol Gypsy8_DR-2p (pos.
CC   1985-6655). The primer-binding site (PBS) is complementary to
CC   the Arg-tRNA.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy8_DR-1p"
FT                 /translation="MDVIEREDVKIENAVIISGLTLTETDEVVESYLLRFG
FT                 SIRQNFLIDDPQSVFHHNAVVEFSHNSAICNIEPQLPLTIVSPTDMSVIFR
FT                 IHKLSTAYSTATSSDTAKQLKSQEDKNVESQQDIIKQNSMKMNGVTHLDDA
FT                 SHREDCGLENLKSSTKVLTSVTNTPQRTGSFKPSALKIDNNNPAKVNMSTT
FT                 SPHSLTEANSVSVRIPISSMHPPDIQRVIMEHVVKMSETVPQHSASFRLKA
FT                 FSGRMPRPGNEPDFDTWRTSVDYLLNELSLSESHKMQKILDSLLPPASDVI
FT                 KHVSPNAPASECLRLLESVYGSVEDGDELLAKFINTLQDPGEKSSAYLHRL
FT                 YVLLCTTIRRGGIAESERDRYLLKQFCRGCWDNALIVELQLERIKADPLSF
FT                 AELAVLLRTAEEKKTSKEERMRKHLGLGRPSPTPLKLRTITHQQSAHFNNS
FT                 LEVDATNIPAFDNPKQKVSKQKSKTQCPETSEADALKKEIMALQSQITAIK
FT                 TAADQEARERTEASELQQLKGQIAELKVQLATSGAQRKQFQKSPQQSNNPS
FT                 DFGVSRERNERQKNTELRTNRPRPWYCFRCGDDGHLAIYCENAPNPLRVEE
FT                 KRQKLREKQAEWDLRNGGATVPLN"
FT   CDS           0..0
FT                 /product="Gypsy8_DR-2p"
FT                 /translation="MGTKRKQSPNNQQALNKHTDTRNSLKLPAGLVGMKCT
FT                 ARVKIEEKEVNCLLDTGSQVTTVPMSFYNRYLSRHPMQPLNHLLEVEGANG
FT                 QAVPYLGYVELTLKFPQEFLGSEAEVPTLALVVPDLTQTPQILIGTNTLDV
FT                 LYAGHAQTVKPRVMSRYQGYQAVIRVLEARLQQAGVNVLGQVKVKGDMPEV
FT                 IAAGSTVVLNGCVKVIGPLSETCVTIEPSVSSSLPGGLLVASSLHSLPAKR
FT                 NVQIPIVLRNETQIDLTIPPKAVLAEVHAVQSVIEGRKPVNASVSKVTNPA
FT                 QNRIIPDFGDSPLSNDWKEKITDLVNSMQDVFALHDLDYGHTNKVKHHIHL
FT                 SDSTPFKQRARPIHPQDVDAVRRHLKELLDANIIRESESSFASPIVVVRKK
FT                 NNDVRLCIDFRKLNSQTVKDAYALPNLEEAFSVLSGSKWFSVLDLKSGFYQ
FT                 IEMEEADKSKTAFVCPLGFYEFNRMPQGVTNAPSTFQRLMERCMGDLNRKD
FT                 VLVFIDDLIVFSKTLEEHKAKLLQVLTRLKEYGLKLSPKKCKFFQTSVQYL
FT                 GHIVSQNGVETDPTKIEALKTWPRPKNLKELKSFLGFAGYYRRFVQDFSKI
FT                 TRPLNDLTIGYPPLQKNQKRNPTKSTPYLDPKEQFGERWNQDCQWAFNTII
FT                 EKLTSAPVLGYADPRLPYVLTTDASTVGLGAALYQEQEGRMRVIAFASRGL
FT                 TKSEAKYPAHKLEFLALKWAVTAKFSDYLYGGEFTVITDSNPLTYILTSAK
FT                 LDATSYRWLSSLSTFNFKIQYRAGKRNLDADGLSRRPHDEQIDDFASQKER
FT                 ERIKQFTLHHLAETEQQVILPDAVKALCERHQVYQSCGDSNLPYSQLTVVE
FT                 SLSQSVDAVPQEFQQEAGGLPVLPQMSEEELKECQRTDPVLEKVIRHLDSG
FT                 KKPHGKVEPAEVALWLREWDRFEFKNGILFRKRQDPRGVLYQLALPKKLRG
FT                 NVLKNLHNDMGHLGIERTLDLARARFYWPKMAITVEEKVKTCERCVKRKTP
FT                 PERAAPLVNITTSRPLELVCIDYLSLEPDRSNTKDILVITDHFTKYAVAVP
FT                 TRNQKAETVAKCLWDNFFIHYGFPERILSDQGPDFESRIIKELCGIAGIQK
FT                 VRTTPYHPRGNPVERFNRTLLQMLGTLEDKQKTYWKDFVKPLVHAYNCTRN
FT                 DTTGFSPYELMFGRQPRLPVDIAFGLPATGSSPSHSIYVRNLKDRLEESYR
FT                 IATENASKLARRNKKRFDERVVTSFLEVGDRVLVRNVKLRGKHKLADKWEK
FT                 EIYVVLKKAGDLPVYTVSPEGRDGPLRTLHRDLLLPCGFLQESMPEPVKPK
FT                 PPRRPRTRANTSAREPDTMTESSDSEDDSMDHYSRRHLPKVESRILFNPRH
FT                 VKPSRDRPIAELSSKTRVVKSKINDCPAIEIPQENLPYLPEDENCPMSEPE
FT                 RENTPVMDSVRPDMLRNVPVVNDQELLEQRDELEILSEIDDEADQRNIHSG
FT                 QAVIDQVERNTLRRSQRHREPPQRLQYSQLGNPLSLVIQSLLQGLSTAVTA
FT                 SLEESDCPREASLLMQKMFPSAAVTQPKRCRGTCIDSRRGE"
XX
SQ   Sequence 6655 BP; 2188 A; 1425 C; 1423 G; 1619 T; 0 other;
     atcttggcga gccagccagg agcgagaaag cagcagcttt tgaggtgaat aattattgaa        60
     atacgcatat atagtgaaaa tataacatta caatggatgt catagaacga gaagacgtta       120
     aaatagaaaa tgcagtgatt attagtggtt taaccctaac tgaaacagat gaagtcgtag       180
     aatcctacct tttgagattt ggttctatac ggcaaaactt tctgattgat gatccgcagt       240
     ctgtatttca tcataatgca gttgttgagt tttcacacaa ctccgccatt tgcaacattg       300
     agcctcaatt gcctttgact atcgtaagcc ctactgatat gagcgttata ttccgcatac       360
     acaaattgag tactgcttac agcacagcca catctagcga cacagcaaag caactgaagt       420
     cacaagagga taaaaatgta gaatcccaac aagatatcat taagcaaaat tcaatgaaaa       480
     tgaatggagt gacacatttg gatgatgcat cacacagaga agattgtgga cttgaaaatt       540
     taaaatccag cacaaaagtc ttgacaagtg taactaacac ccctcagcga actggaagtt       600
     tcaagccatc tgctctaaaa attgataata acaacccagc caaggtgaac atgagtacta       660
     catcgcccca tagtttaaca gaagccaatt ctgtatctgt gagaattcct atatcctcta       720
     tgcacccccc agacattcag agagtaatta tggaacatgt tgtgaagatg agtgaaacag       780
     tgccccaaca cagtgcttct ttccgcttaa aagccttttc tggacggatg cctcgtccag       840
     gtaatgagcc tgacttcgac acatggcgga caagcgttga ctatttgttg aatgagttat       900
     ccctttctga gtcacataaa atgcaaaaaa ttctagacag cctgttaccg cctgcttcag       960
     atgtcattaa gcatgtgagc cccaatgctc cagcatcaga gtgtctgagg ttactagagt      1020
     ctgtttacgg ttcagtggaa gatggagatg aattattagc aaagttcata aacactctgc      1080
     aggatcctgg tgaaaaatca tctgcctatc ttcatagatt gtatgtgctc ttgtgcacta      1140
     ccattaggcg tggagggatt gcggagagtg aacgagaccg ttatctcctg aaacagttct      1200
     gccgtggctg ttgggacaat gccttgatag ttgaattgca gctagagaga ataaaagctg      1260
     atccactctc ctttgctgag ttagcagtac tcttaagaac agctgaggag aagaaaactt      1320
     caaaagaaga gagaatgaga aagcatcttg gtttgggcag accctcacca accccactca      1380
     aattaagaac aataactcac caacagtctg ctcactttaa taactcactt gaagtggatg      1440
     caactaatat tccagcattt gacaatccaa aacagaaagt ctctaaacag aaaagtaaaa      1500
     cccagtgtcc tgaaacatct gaagctgatg ctttgaaaaa ggagattatg gctctccaaa      1560
     gccaaatcac tgccattaaa acagcagctg accaggaagc aagggagaga actgaggcaa      1620
     gtgagcttca gcaactaaaa ggacagatag cagagcttaa agtccaactt gccacttctg      1680
     gagcacagag aaagcagttt cagaaatccc ctcaacagag taataatcct agtgattttg      1740
     gtgtcagtcg agagagaaat gaaaggcaaa aaaacactga attaagaacc aatcgaccca      1800
     gaccatggta ttgctttcgc tgtggagatg atggtcatct tgccatttac tgtgaaaatg      1860
     caccaaaccc attaagagtt gaagaaaaga gacaaaaatt aagagagaaa caagctgagt      1920
     gggatcttag aaatggagga gccacagtgc ctttaaacta aaatcagtct ctatcgcagg      1980
     gcggatgggg actaagagaa aacaaagccc aaataatcaa caagcactta ataagcatac      2040
     agataccagg aactccttaa agttaccagc cggactagtg ggaatgaagt gcactgctag      2100
     agtcaaaatt gaagaaaagg aagtgaattg cttgctagac acagggtctc aagtcacaac      2160
     agtccccatg tctttctaca accgctacct gtcacggcat cctatgcagc cgttgaatca      2220
     tctgttagag gttgaagggg caaacggcca agctgttcct taccttggat atgttgaact      2280
     gactctaaag tttccacaag agtttttagg atctgaggcc gaagttccaa cattggccct      2340
     agttgtccca gacctgacac aaacacccca aatccttatt ggcactaaca ccctagatgt      2400
     cttatatgct ggtcatgctc aaacagtcaa gcccagagtt atgtcacgtt atcaagggta      2460
     tcaagctgtg ataagagttc tagaagcaag actgcagcag gctggtgtga atgtcctggg      2520
     ccaagtgaaa gtaaaaggag acatgcctga agtgatagca gctggaagta ctgtagttct      2580
     taatggatgc gtcaaagtta ttgggccact ctcagagact tgtgttacaa ttgaaccctc      2640
     agtatcgtca tctttgcctg gtggattact tgtggcaagc agtttgcatt ctctacctgc      2700
     aaaacgcaat gtccaaatac caatagtgct aagaaatgag acacaaattg atttaactat      2760
     tcctccaaaa gcagtattgg ccgaagtaca tgctgtacaa agtgtgattg agggaagaaa      2820
     accagtaaat gcttctgtga gcaaagttac aaatcctgca caaaatagaa tcatccctga      2880
     ctttggtgac tctccgttat caaatgattg gaaggaaaag ataactgatc ttgtaaactc      2940
     catgcaggat gtatttgcac ttcatgactt ggattatggc cacacaaaca aagtaaaaca      3000
     ccatatccat ctcagtgata gcaccccatt caagcagcgt gctcggccta tccatcccca      3060
     ggatgtcgat gctgtaagac ggcatcttaa agaactcctt gatgcaaaca tcatcagaga      3120
     atctgaatcc tcttttgctt ctccaattgt agtagtaaga aagaaaaaca atgatgtacg      3180
     cctctgcatt gacttcagaa agttaaactc gcaaactgta aaagatgcat atgccctgcc      3240
     taatttggag gaagcctttt ctgttctatc tggctccaaa tggttttcag ttctcgactt      3300
     aaaatcaggc ttttatcaaa ttgagatgga agaggctgat aaatcaaaga ctgcattcgt      3360
     ctgtccttta ggattctatg aattcaacag aatgcctcaa ggcgtcacta atgcaccaag      3420
     tacatttcag aggctgatgg agcgatgcat gggtgatctt aacagaaaag acgtcctagt      3480
     tttcatagac gaccttattg tcttttccaa gacattagaa gagcacaaag ccaaactctt      3540
     gcaagtcctg acacgactaa aagaatacgg attaaagctt tctcccaaga agtgcaagtt      3600
     tttccaaaca tcagtccagt acttaggcca catagtctct cagaatggtg ttgaaacaga      3660
     tccaaccaaa attgaagctc tcaaaacctg gccaagacct aaaaacctta aagaactgaa      3720
     atcttttctt ggatttgcag gatactacag aaggttcgtt caagacttct caaaaatcac      3780
     aagacccctt aacgacctta ctattggata tcccccactg cagaaaaatc agaaacgaaa      3840
     ccccacaaaa agtacacctt acctggatcc taaagaacag tttggagagc gatggaacca      3900
     ggattgtcag tgggcattta acacaatcat agagaagttg acctctgctc cagtcctagg      3960
     atacgcagat cctagactcc cctatgtgtt gaccactgat gccagcactg ttggacttgg      4020
     agcagctctt tatcaagagc aggaaggtcg aatgagggtg attgcctttg caagtagggg      4080
     actaactaaa agtgaagcaa agtaccccgc tcacaaatta gagttccttg cactcaagtg      4140
     ggcagtcaca gccaaattca gtgactatct gtatggagga gagttcactg tgattacaga      4200
     cagcaaccca ctcacctaca tattaacatc tgcaaaactc gatgcaacca gttacagatg      4260
     gctgtccagc ctgtcaacat tcaattttaa gatccagtat cgtgcaggca aaagaaatct      4320
     agatgcagat ggactctcaa gacggcccca tgatgaacag attgatgatt tcgcctctca      4380
     gaaagaacgt gaaagaatca aacaattcac tctccatcac ttagctgaga cagaacaaca      4440
     agttatcttg cccgatgcag taaaagccct ctgtgaacga caccaagtat atcagagctg      4500
     tggtgattct aacctaccgt attctcaact tactgtggta gaatcactgt cccaaagtgt      4560
     tgatgcagta ccccaagaat tccagcagga ggcaggaggc cttccagtac ttccccaaat      4620
     gtcagaggaa gagttaaaag aatgtcaaag aactgatcca gtgcttgaaa aagtaattag      4680
     gcaccttgat tctggaaaga aacctcatgg gaaagtagag cctgcagaag tagctttgtg      4740
     gctaagagag tgggaccgct ttgagttcaa gaatggaatc ttatttagaa agagacagga      4800
     cccaagaggc gtattgtatc agttggcctt gcccaaaaag ctcagaggaa atgtattaaa      4860
     aaatctgcac aatgacatgg ggcatctcgg aattgaaagg actttggacc tggctagagc      4920
     ccgtttttac tggccaaaaa tggcaataac tgtggaagag aaagtaaaga cctgtgagcg      4980
     atgtgtaaaa cgaaagaccc ctcctgagcg ggctgcaccc ctggtgaata tcacaaccag      5040
     cagacccctt gaactagtct gcatagacta cttgtcacta gagcctgatc gaagcaacac      5100
     taaagacatc cttgtaatta ctgatcattt caccaagtat gctgttgcag tgcccactag      5160
     aaaccagaaa gctgaaactg tggccaaatg cttatgggac aactttttca tccattacgg      5220
     gtttcctgaa agaattctga gtgatcaggg gcccgacttt gagtcaagaa taatcaaaga      5280
     actgtgtggc atagcaggaa tacaaaaagt aagaactacg ccttaccatc ccagaggcaa      5340
     ccctgtagaa cgtttcaaca gaacattgct ccaaatgtta gggaccctgg aggacaaaca      5400
     aaagacctat tggaaagact ttgttaaacc attagtccat gcttacaatt gcactcgtaa      5460
     tgacacaaca ggattctcac cttacgagct gatgtttggg agacagcctc ggctgccagt      5520
     agacatagca tttggtttac ctgctactgg gtcatcccca tctcattcca tttatgtgag      5580
     aaatctgaaa gatcgcttag aggaaagcta tagaatagct actgagaatg cctcaaaatt      5640
     agcaagaagg aacaagaaac gatttgatga gcgagtagtc acctcattcc ttgaggttgg      5700
     agatcgtgtt ctagtacgga atgtcaagct aagaggaaag cataaattgg ctgataagtg      5760
     ggagaaagaa atctatgttg tgttaaagaa ggcgggagac ttacctgttt atactgttag      5820
     tccagaaggc agggatggcc cacttcgcac actgcatcga gacttgctgc tgccctgtgg      5880
     attcttacaa gaaagcatgc ctgagccagt aaaacctaaa ccaccccgca gacctagaac      5940
     tcgagcaaac actagtgcaa gagaacctga tactatgact gagagttctg actctgagga      6000
     tgattcaatg gatcactact cacgtagaca cttaccaaaa gtagagagca gaatcctctt      6060
     caatccaaga catgttaagc cttcaagaga caggccgatt gcagaacttt ctagtaaaac      6120
     aagagtcgtg aaaagtaaaa tcaatgactg tcctgcaata gagataccac aagagaactt      6180
     accttactta cctgaagatg aaaactgtcc catgagtgaa cctgaaagag agaacacacc      6240
     tgtaatggat tctgttagac cagatatgtt aagaaacgta cctgtagtaa atgatcaaga      6300
     actattggaa cagagagatg aactggaaat attgagtgaa atagatgatg aagctgatca      6360
     gagaaatatt cacagtggcc aggcagtgat cgaccaggtt gaaagaaata cattgagacg      6420
     ttcgcaaaga caccgtgagc caccacaaag gctacagtac tctcaattag ggaatcctct      6480
     ttctctggtt atacaatcct tactacaagg tctcagtaca gcagtcactg catctttaga      6540
     ggagtctgat tgccccagag aagcctctct tttaatgcag aaaatgttcc cttctgctgc      6600
     cgttacgcag cctaaaagat gcagagggac ctgcatagat tccaggcggg gagaa           6655
//
ID   BRSATI      repbase;    DNA;    ZEB; 186 BP.
XX
AC   M89944;
XX
DT   22-DEC-1995 (Rel. 2, Created)
DT   22-DEC-1995 (Rel. 2, Last updated, Version 1)
XX
DE   Zebrafish satellite type I DNA.
XX
KW   Repetitive DNA; satellite type I; BRSATI.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-186
RA   Ekker M., Fritz A., Westerfield M.;
RT   "Identification of two families of satellite-like repetitive DNA
RT   sequences from the sebrafish (Brachydanio rerio).";
RL   Genomics 13, 1169-1173 (1992).
XX
DR   GenBank; M89944; Positions       1     186.
XX
SQ   Sequence 186 BP; 56 A; 36 C; 30 G; 64 T; 0 other;
     gatccagcca taaaatgcat cattcttttt tgttttagac aacatttcat gcactgttaa        60
     acatgttaaa gcaagttgca agtgaaaatc tatgtctctg actgagtttg cattactgtg       120
     atttgacctc tctgctggct gagataagct cattttcaac gtccaattca gaatgtaata       180
     aaacct                                                                  186
//
ID   TDR12       repbase;    DNA;    ZEB; 242 BP.
XX
AC   .
XX
DT   04-MAR-2002 (Rel. 7.02, Created)
DT   04-MAR-2002 (Rel. 7.02, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; TDR12.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-242
RA   Jurka J., Drazkiewicz A.;
RT   "TDR12: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2(2), 22-22 (2002).
XX
CC   [1] (Consensus)
XX
CC   TA-target site duplication.
XX
SQ   Sequence 242 BP; 84 A; 36 C; 41 G; 81 T; 0 other;
     tatagaccat tttgagggat gtaaacaaaa acaatggtcc caacgtattt cctgttttac        60
     atttttaatt tctatagctt ccgagaatcc aaaaagagcc acatattgat aaataatgtt       120
     atgatagctg ttttaacatt aagttatgat tgaattgcct cttgttacag ttatgaaata       180
     gtttgataac aagcaggaaa tgttcatggg ccaatgacat gaccacattg aaatggtcta       240
     ta                                                                      242
//
ID   LINE_DR     repbase;    DNA;    ZEB; 647 BP.
XX
AC   .
XX
DT   31-JUL-2000 (Rel. 4, Created)
DT   31-JUL-2000 (Rel. 4, Last updated, Version 1)
XX
DE   Danio rerio LINE-like sequence - a consensus.
XX
KW   LINE_DR.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-647
RA   Okada N., Hamada M., Ogiwara I., Ohshima K.;
RT   "SINEs and LINEs share common 3' sequences: a review.";
RL   Gene 205(1-2), 229-243 (1997).
XX
RN   [2]
RP   1-647
RA   Jurka J.;
RT   "LINE_DR.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
CC   [2] (Consensus)
XX
CC   An internal portion similar to a 35 bp SmaI SINE element
CC   is not included.
XX
SQ   Sequence 647 BP; 167 A; 183 C; 103 G; 170 T; 24 other;
     aactaaactt ctctgamcac attwctagaa ctgctcgatc gtgcagattc gcactctata        60
     acatcagaaa gatccraccc ttcttwtctg aacatgcagc tcaactcctt gttcaagctc       120
     ttgttctctc caaactggat tactgcaact ctctactagc tgggcttcca gctaactcta       180
     tcaagcctct tcaactgctc cagaacgcag cagcacgagt ggtcttcaat gaaccgaaac       240
     gagcacatgt cactccgctg ctagtccgtt tgcactggct gccagttgct gctcgcatca       300
     aattcaaagc tctgatgttt gcctacaaag tgacttctgg ccttgctcch tcttatctgc       360
     tctcacttct gcagatctat gtgccctcca gaaacttgcg ttgtgtgaat gaacgccgcc       420
     tcgtggttcc atcccaaaga gggragwaat cactttcscg aatgctcack ctsrcrytca       480
     atctgcccag ttggtggaat gaactcccta actgcawmas aacrgcagag tcactygctr       540
     yyttcargaa acgactaaaa actcaactat ttagtctcca cttcacttcc taatctgcaa       600
     ttgcctctyt gaatatcaca ctaactgtac ncacaaaaaa aaaaaaa                     647
//
ID   SINE3-1a    repbase;    DNA;    ZEB; 570 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   SINE3-1a is a SINE retrotransposon - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; SINE; 5S rRNA;
KW   polIII; SINE3-1; SINE3-1a; conserved.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RA   Kapitonov V.V., Jurka J.;
RT   "SINE3-1, a novel class of SINE elements that utilize 5S rRNA.";
RL   Repbase Reports 2(6), 22-22 (2002).
XX
RN   [2]
RA   Kapitonov V.V., Jurka J.;
RT   "A novel class of SINE elements derived from 5S rRNA.";
RL   Mol. Biol. Evol 20, 694-702 (2003).
XX
RN   [3]
RP   1-570
RA   Jurka J.;
RT   "Direct submission.";
RL   Direct submission (September 2004).
XX
CC   [3] (Consensus)
XX
CC   SINE3-1a is a consensus sequence of a SINE3-1 subfamily.
CC   The SINE3-1a and SINE3-1 consensus sequences are 84% identical
CC   to each other.
XX
SQ   Sequence 570 BP; 124 A; 149 C; 155 G; 141 T; 1 other;
     cagctagctc tctgcaactc tcacatggtc gcccactgaa gctaagcagg gctgcgcccg        60
     gtcagtacct ggatgggaga ccacatggga aagctaggtt gctgccggaa gtggtgttag       120
     tgaggccagc agggggcgcc caacctgcgg tctgtgtggg tcctaatgcc ccagtatagt       180
     gacggggacn ctatactgct cagtgagcgc cgtctttcgg atgagacgtt aaaccgaggt       240
     cctgactctc tgtggtcgtt aaaaatccca ggatgtcctt cgaaaagagt aggggtttaa       300
     ccccggcatc ctggccaaat ctgcccactg gcctctgtcc atcatggcct cctaaccatc       360
     cccatatcta attggcttca tcactgtctc ctctccacca atcagctggt gtgtggtgtg       420
     cggtctggcg caaaatggct gccgtcgcgt catccaggtg gatgctgcac actggtggtg       480
     gatgaggaga ttccccccaa tgtgtaaagc gctttgagtg cccagaaaag cgctatataa       540
     atgtaaggaa ttattattat tattattatt                                        570
//
ID   Gypsy10-I_DR repbase;    DNA;    ZEB; 6147 BP.
XX
AC   .
XX
DT   07-JAN-2005 (Rel. 10, Created)
DT   07-JAN-2005 (Rel. 10, Last updated, Version 1)
XX
DE   An internal portions of the Gypsy10_DR LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   GYPSY superfamily; Gypsy10-I_DR; Gypsy10-LTR_DR; Gypsy10_DR;
KW   endogenous retrovirus; gag; integrase; reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-6147
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy10_DR, an LTR retrotransposon from zebrafish.";
RL   Repbase Reports 4(12), 313-313 (2004).
XX
CC   [1] (Consensus)
XX
CC   Gypsy10-I_DR is an internal portion of the Gypsy10_DR LTR
CC   retrotransposon that belongs to the Gypsy superfamily. Its
CC   long terminal repeat is deposited in Repbase as
CC   Gypsy10-LTR_DR. Gypsy10_DR is characterized by 4-bp target
CC   site duplications. The internal portion encodes one 1988-aa
CC   polyprotein composed of gag, protease, reverse transcriptase,
CC   and integrase domains (pos. 142-6105).
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy10-I_DR1p"
FT                 /translation="MSFRSDPQLQSELLEWCREAVIDPAHALLLTGVPQNT
FT                 ETACIEKVAESVKLFGRVRVRDSKGGATPTTLLVLCECREVVDPTNCPEEL
FT                 HPTDGEEAWMIILATERESAHVAPAEFADKLSKFLKDEGKSMTDVHALFSP
FT                 QSANPSSPESIIRAVGEILEKTVRPSSDGSAYRRLRTFSGIVPTPVGEETM
FT                 DHWIEQAKLMISECECSEKEKRRRIVESLKGPALEIIKAVRMSCPDAEAVK
FT                 YVEALESTFGSSESGEDLYFAFRLLRQCPGESLSAFLRRMEKSLTKVIQKG
FT                 GLTSANADKARVEQLIRGAVESDMMLLQLRLRERKENPPTFLSLLNEVREA
FT                 EEIEATRRKITATAKPIHLQEESICPTVVHELKAEIQELRAQIKSDRSNIA
FT                 SSMMIENRVKSRQLSPTDSKEVVKETEVQVLKKQVQQLQQQLAIMSVGQSN
FT                 STSHAQLPQTPVSSSSRHQLSKPKADYFCYRCGEEGHIATKCKAPENATLV
FT                 INKLVRSLKRAKGTKSDPNSHAEDRACFSKKSQIHSCESKGLPKGLVGPAS
FT                 TIAVKVGGHPCCALWDSGSQVTIVFDSWYSEHLSNVPILPLSGLSIWGLSS
FT                 SNYPYKGYIVVDVTFPVALTGAEETVTILALVCPDPKGPQQFPLIIGTNAS
FT                 FFQRMTNGEGTNITRSAHSLRIQTHLDTTSFAVDQPEGQVRWKGPGMLNVP
FT                 SQGERYASCKIESDKPLRKDIFLIETSPVDSLPAGLLVSPVVFSSSAVDVN
FT                 NFRILIQNETSKELSVPPGTVVAQIFPTDTVTVAHGVTESNDQINPDVFNF
FT                 GDSNIPTAWEKRLRLKLAERKNVFSTQEWDVGLAKGVTHQIRLHDPHPFRE
FT                 RSRRIAPADIDDVRRHLKDLLAAGIIEESRSPYASPIVIVRKKSGAVRMCI
FT                 DYRTLNSRTTPDQYVTPRIDDALDCLAGSKWFSVLDLRSGYYQIAMSEEDK
FT                 EKTAFICPLGFYQFQRMPQGITGAPATFQRLMEKVVGDMHLLQVIVYLDDL
FT                 IVFGSTLEEHEERLMKVLDRLEEWGLKVSIDKCQFCQPKVKYVGHIVSAAG
FT                 IAPDPEKVAAVTQWKEPTDLKSLRSFLGFCGFYRRFVKNYSSIVRPLTELT
FT                 KGYPPAKGKSKVEGKKYFKETDQFGERWDNACKQAFQEIIKCLTQAPVLAF
FT                 ADPSLPYVLHIDASLSGIGAVLNQEHSDGLRPVAFASRKLSASEQRYHIHQ
FT                 LEFLALKWAVVDKFHDYLYGVPFVVRTDNNPLTYVLTSAKLNATGHRWLAA
FT                 LATYNFSLQYKPGKHNIDADVLSRYPAEPATSFSWTEIPQSGVKAICQLSN
FT                 LSWSDEKSRLIDQLGVSPGSIPAVYSCPALLDVCHLEQLTHADLKLSQEQD
FT                 PVIGKVKQDIARNKPLTPIKGSDPTLTLLQRQGPKLVIRNNLLYRVTKNQS
FT                 GKEKVQLVLPEKYHLTVLRSLHDDSGHLGVEKTTELLRDRFYWPRMTSDIE
FT                 QYIKNCGRCITRKTLPQKSAPLSHITSSGPLDLVCIDFLSLEPDSKGIANV
FT                 LVITDHFTRYAQAFPTKDQRAVTVAKVLVEKFFVHYGLPSRIHSDQGRDFE
FT                 SRLIQELLGMLGIRKSRTTPYHPQGDPQPERFNRTLLSMLGTLEPAQKSKW
FT                 SQHITQLVHAYNCTKNEATGYSPYQLLFGREARLPIDICFGISPAGEKGVT
FT                 HLQYVEKMKAELQQAYQLAAETSLKAHQRNKKLYDTRVKPQLLTVGDRVLI
FT                 RNLAVKGKNKLQDRWNSLPYVVVEKFKDLPVYKLRPERGMGAIRTMHRDHL
FT                 LPVGENVRFSKPNDSNPSTQSPVTRAQSGKRVQKEKKVENVEQVRDENHET
FT                 SESEDDNLCYYYPKLIPALRTLPTPQIAVEPEIPAEYGPELNSECEARKDT
FT                 VEEEAREVLNQPAEAVDDQGVGDNDHRNVPKPGSEPAVCRKSTREVKPVIK
FT                 LSYDDLGRPTDKPLTMVHRGMVVHIEDLSKTRKSCNTVWCHPMAQCSQCVP
FT                 TAPGPIVRTVIQF"
XX
SQ   Sequence 6147 BP; 1843 A; 1324 C; 1415 G; 1565 T; 0 other;
     caaattgggg gctcgtccgg gatacactct caccttttcc tgatacacta agaagagtaa        60
     attaaacacc ttaatacacg ttaagaacac tgaagaggaa aaactgacac catcctgtaa       120
     ctaactgctt attattgaga aatgtctttc agaagtgacc cacaactgca gagtgaactt       180
     cttgagtggt gcagagaagc agtaatcgac ccagctcatg cgttgttgct gacaggagta       240
     ccacaaaaca ctgagactgc ttgcattgaa aaagtggccg agagtgtgaa gctttttgga       300
     cgagtacggg ttcgagactc aaaaggtgga gccactccga caactctgtt agtgctgtgt       360
     gaatgcagag aagttgtaga tcccactaat tgccctgagg aattgcatcc tacagatggt       420
     gaggaagcct ggatgattat cttagctacg gaaagagaat cagctcatgt tgctccagca       480
     gagtttgctg acaagctctc caagtttctg aaggatgaag gcaagtctat gactgatgta       540
     catgctctat tttctccaca gagtgcaaat cccagttcac ctgagtcaat aattcgtgca       600
     gtgggtgaaa ttcttgaaaa aacagtaaga ccatcgagtg atggaagtgc ctaccgtcgt       660
     ttacgtacct tctctggtat tgttccaacc cctgtaggag aagaaactat ggatcactgg       720
     attgaacaag ctaagttgat gatatctgaa tgtgagtgct ctgaaaagga gaaacggaga       780
     agaattgtgg aaagtttaaa gggaccagcc ctggaaatca ttaaagctgt ccgtatgtca       840
     tgtcctgatg ctgaagcggt gaaatatgtg gaagctctgg aaagtacttt tggatcttct       900
     gagtctggag aagacttata ctttgctttt cggcttctta gacagtgtcc tggtgagtca       960
     ctttctgctt ttctgagaag aatggagaaa tcactgacta aagtcatcca aaaaggggga      1020
     ctgacttctg ctaatgctga taaggctaga gtagagcaat tgattcgagg agctgttgaa      1080
     tctgacatga tgctattgca gttgcgatta agggagcgga aagaaaatcc accaactttc      1140
     ctgagtctgt taaatgaggt tcgtgaggct gaggagatag aagccactcg acgcaagata      1200
     actgctactg caaagcccat acacttgcag gaagaaagca tttgtcccac tgttgtacat      1260
     gaacttaaag cagaaattca agaattgagg gctcagataa aaagtgatcg ttcaaatatt      1320
     gcttcatcca tgatgatcga gaacagagtg aaatcacgcc aattaagccc cacagactca      1380
     aaggaagtag tcaaagagac tgaggttcag gtgttgaaaa aacaagtaca gcagttacaa      1440
     caacagctag ctataatgag tgttggtcaa agtaattcaa caagccatgc ccagttacca      1500
     caaacccctg tttcaagttc atcgcgacac cagctttcaa aacccaaagc tgactacttt      1560
     tgttaccgat gtggtgaaga gggacacatc gcaactaaat gtaaagcccc tgaaaatgcc      1620
     actcttgtaa tcaacaagct agtacgttcc ttaaaaaggg ctaaaggaac aaagagtgat      1680
     ccgaacagcc atgctgaaga tagagcttgt ttttcaaaaa agagccagat acacagctgt      1740
     gagtcaaagg gtcttcccaa gggtttagtt ggaccagcgt ctaccattgc agtgaaagta      1800
     ggaggacatc catgctgtgc tctttgggac agcgggtctc aagtcactat tgttttcgac      1860
     tcctggtatt ctgaacacct gtcaaatgtg cccatacttc ctctttctgg cctatccatc      1920
     tggggcctaa gttcatccaa ttatccctat aaaggataca ttgtagttga tgtcacattc      1980
     cctgttgctc ttactggtgc agaagaaaca gtcactatcc ttgctttagt ctgcccagac      2040
     cctaaaggac cacagcagtt tccattaatc atcggaacca atgctagctt cttccagcga      2100
     atgacaaatg gtgaaggtac taatatcaca cgcagtgccc actcactcag aattcaaaca      2160
     cacctggaca ccacatcttt tgctgtcgac caacctgagg gccaagtgag atggaaaggc      2220
     ccaggtatgc ttaatgtccc atcacaaggt gagcgatatg cttcatgcaa aattgagtct      2280
     gacaaacctt tgagaaaaga catctttctc attgaaacct ctcctgttga ttcccttcct      2340
     gctggactgc ttgtttcccc tgtcgttttt tcttcatcag cagtggatgt aaacaatttc      2400
     aggatcttga ttcaaaatga gaccagcaaa gaactctcag ttcctccagg gactgtagtt      2460
     gctcaaatat tccctacaga tacagtcact gttgctcatg gagttacaga gtctaacgat      2520
     cagattaatc ctgacgtgtt taactttggt gattcgaaca tacctacagc ttgggagaaa      2580
     agattacgct tgaagctggc tgagcgaaag aatgtgtttt cgacacagga atgggatgta      2640
     ggcttggcta aaggagtcac ccatcaaatt agactgcatg atcctcaccc attcagagag      2700
     cgttcaaggc gcattgcccc agccgatatc gatgatgtca gaaggcatct gaaagatctt      2760
     ctagctgctg gtatcattga ggagtccaga agcccatatg catcgcctat agtaatagtg      2820
     cgcaaaaaga gtggtgctgt gagaatgtgc attgattacc ggactctaaa cagtcgcact      2880
     acacccgatc aatatgtcac ccctcgcatt gatgatgcat tagactgcct agcgggaagc      2940
     aaatggtttt cagttttgga tttgcgaagc ggctattacc aaattgcgat gtctgaggaa      3000
     gacaaagaaa aaactgcatt catttgccca ctggggttct accagtttca acgtatgcca      3060
     caaggaatca ctggggcccc agcgacgttt caaagattaa tggagaaagt ggttggagat      3120
     atgcatctat tacaagtgat tgtctatctc gatgacctca ttgtctttgg aagcacactg      3180
     gaagagcatg aggagcgatt gatgaaagtc ctcgaccgac tggaggaatg ggggctgaaa      3240
     gtgtctatcg acaagtgcca gttctgtcag ccaaaagtca agtatgtggg acacattgtt      3300
     tctgctgcag gaatagctcc agaccccgag aaagtagctg cggtgactca gtggaaagag      3360
     cctactgacc tgaaatcttt aagatctttc cttggatttt gtggatttta ccgccgtttc      3420
     gttaagaatt actcctccat tgtaagacct ctgacagagt taacgaaagg ttacccacct      3480
     gcaaaaggaa agagtaaggt ggaaggaaag aagtacttca aggagactga tcaatttggt      3540
     gagcgttggg acaacgcatg taaacaagct tttcaagaga taatcaagtg tttaactcag      3600
     gcacctgtac ttgcctttgc tgatccatcc ctaccatacg tactccacat tgatgcaagt      3660
     ctgagcggga ttggtgctgt gctgaatcaa gaacactctg atggacttcg accagttgct      3720
     tttgctagca gaaagttgag tgcttcagaa cagagatatc acatacacca gctagagttc      3780
     cttgcattaa agtgggctgt tgtagacaag tttcacgatt acctgtacgg agttccattt      3840
     gtcgtgagaa ctgataacaa tcctctaact tacgtactga caagtgcaaa gttgaatgca      3900
     actggtcata gatggctagc agccttggca acatataact tcagcctgca gtataagcca      3960
     ggcaaacaca acattgatgc tgacgtgctt tcccgttatc ctgcggaacc tgccacttcc      4020
     ttctcttgga ctgaaattcc acagtctgga gtaaaagcta tttgtcagtt gtccaacttg      4080
     tcttggagtg atgaaaagtc cagactgata gaccagttag gtgtttcacc tggtagcatc      4140
     cccgctgttt actcttgtcc tgcgttgctt gatgtttgtc acctagaaca gttgactcat      4200
     gctgacctaa aattgtcaca agaacaggat cctgttattg gcaaagtaaa acaagacatt      4260
     gcacgaaaca agccactcac ccctataaaa ggttctgatc ctaccctcac tctcctgcaa      4320
     cgccaaggtc ccaaacttgt cattcgaaat aatctgttgt acagagtcac caaaaaccaa      4380
     agtggaaaag agaaagttca actagtgttg ccagagaaat accatttaac agtgctgcgg      4440
     tctctgcatg atgattctgg tcacctagga gtagagaaga ccacagagtt actgagagat      4500
     cgtttttact ggccacgtat gaccagtgac attgagcaat acatcaaaaa ttgtggtcgt      4560
     tgtattacac gcaagacctt acctcaaaag tctgccccat taagccacat taccagcagt      4620
     ggtccactag acttggtttg tatcgacttc ttgtcccttg agcctgatag taagggtatt      4680
     gctaatgtgc tagtaataac tgaccacttc acccgctatg cacaagcatt tcctactaaa      4740
     gaccagcgag ctgtgacagt tgccaaagtg ttggtagaaa agttttttgt tcattacgga      4800
     ttgccctcac gcattcattc cgatcaagga agagactttg aaagccggtt gatacaggaa      4860
     cttctgggaa tgttggggat ccgcaaatca cggaccacac cttaccaccc acaaggtgac      4920
     ccacagccag aacgctttaa ccgtaccctt ctgtcaatgc taggtactct ggagccagcc      4980
     caaaaaagta agtggagtca acacatcact cagcttgtac acgcttataa ttgtacaaaa      5040
     aacgaggcta caggctactc cccttatcag ttgctttttg gaagagaggc tcgtctgccc      5100
     atagacatat gttttggcat ttcacctgct ggtgagaaag gagtgactca tctgcaatac      5160
     gttgagaaaa tgaaagctga actgcaacaa gcatatcagc tggcggctga gacttcgttg      5220
     aaggctcatc aaagaaacaa gaagctctat gacacaagag tgaaacctca actgttgact      5280
     gttggagaca gagtgctcat tcgaaatctt gctgtaaaag gaaagaacaa actccaggac      5340
     agatggaatt ccttaccata tgtggttgtg gagaagttta aggacttacc ggtctataaa      5400
     ctgaggcctg agcgtggaat gggagcaata aggacaatgc atcgagacca cttgttacct      5460
     gttggagaga atgtgagatt cagtaagccg aatgactcca atccctcaac acagtcacct      5520
     gtaacaagag cacaatcagg aaaaagagta caaaaggaaa agaaagttga aaatgttgag      5580
     caagtaagag atgaaaacca tgagacatct gagagtgagg atgacaacct ttgttattac      5640
     tacccaaagt taattcctgc tctgagaact ctgccaacac ctcaaattgc tgtggaacct      5700
     gaaatacctg ctgaatatgg tccagaactg aattcagagt gtgaagcgag aaaagataca      5760
     gtggaggagg aggcgagaga ggttctcaat cagcctgctg aagctgtgga tgatcaaggt      5820
     gtaggagaca atgaccacag aaatgttccc aaaccggggt ctgaacctgc tgtgtgtcgt      5880
     aagtctacga gagaagtgaa accagtgata aaactgagtt atgatgattt gggccgaccc      5940
     actgataaac cattaactat ggttcaccga gggatggtag tacacattga agatttgtca      6000
     aagacccgaa agagctgcaa cacagtttgg tgtcacccca tggctcagtg ttcccagtgt      6060
     gtccctacag cccctggccc tattgtcaga acagtaattc aattttaaat gtctcatgag      6120
     ggcatgagaa gtttagaagg gggagga                                          6147
//
ID   Gypsy-16-I_DR repbase;    DNA;    ZEB; 6775 BP.
XX
AC   .
XX
DT   11-FEB-2005 (Rel. 10.01, Created)
DT   11-FEB-2005 (Rel. 10.01, Last updated, Version 1)
XX
DE   An internal portion of the Gypsy-16_DR LTR retrotransposon - a
DE   consensus sequence.
XX
KW   GYPSY superfamily; Gypsy-16-I_DR; Gypsy-16-LTR_DR; Gypsy-16_DR;
KW   LTR retrotransposon; endogenous retrovirus; gag; integrase;
KW   protease; reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-6775
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-16_DR, a family of LTR retrotransposons from zebrafish.";
RL   Repbase Reports 5(1), 5-5 (2005).
XX
CC   [1] (Consensus)
XX
CC   Gypsy-16-I_DR is an internal portion of the Gypsy-16_DR
CC   LTR retrotransposon that belongs to the Gypsy superfamily.
CC   Its long terminal repeat is deposited in Repbase
CC   as Gypsy-16-LTR_DR. The consensus sequence was reconstructed
CC   based on multiple alignment of nine proviral copies (they are
CC   less than 1% divergent from the consensus sequence).
CC   Gypsy-16_DR retrotransposons are characterized by 4-bp
CC   target site duplications. The internal portion contains two
CC   ORFs encoding the 645-aa Gypsy-16_DR1p gag (pos. 109-2043)
CC   and 1601-aa Gypsy-15_DR2p pol proteins (pos. 1971-2043)
CC   composed of the protease, reverse transcriptase, and integrase
CC   domains. The second protein, including the protease domain,
CC   does not start from Met. Presumably, the gag-pol fusion protein
CC   is formed originally due to a ribosomal frame shift. This family
CC   is likely still active in the genome. Each of all nine proviral
CC   copies is flanked by identical LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           109..2043
FT                 /product="Gypsy-16_DR1p"
FT                 /translation="MDIIEKENVDISKAVIVGGMTLTETDSDLESWLLRYG
FT                 SINRHLLIDDPDCEFHRHAIIEFTHNSAMKTLMPLLPLTVVSMSNPSTTFM
FT                 VRALSCVYPHIASDSATNGYLEELQNIASFSGKSIEEVLQTELLKIKFGPS
FT                 HAESLPVLDKKLEFPNAARSQILDRSTVSSPNRLLSPVISQSMITEQTAFP
FT                 SSRISPFHEVESTNSKNLSKESLNHRSTKPTVTVSSHPALTMDIIDPPSVQ
FT                 KVVVEHIVRTNDTAPMHHTSFRLRSFSGKIPRPVNEPDFDTWRASVDLLLT
FT                 DPSISDLNRARKIIDSLLPPAADIVKHVSPNSLPAVYLELLESVYGSVEDG
FT                 DELLARFMNSFQNNGEKPSTYLHRLQVLLSTAIRRGGIFEEERNRYLLKQF
FT                 CRGCWDSSLIADLQLERRKATPPSFAELVVLIRTEEDKNASKEERMRKHLG
FT                 LNKHYPAPSKFRLSAHQISAHQSETQDDQTDTSLAKQVCELQAQVVALQKP
FT                 SSQKEKKKNAKPDEVSELRNVVTELQAQITAMQTTATPKIKSDVEATEIAD
FT                 LKRQIADLKVQLTAPDMYRNRTRNLLPEPRATDCYRASKLPESRPRPGYCF
FT                 RCAEDGHLASSCSNAPDPTKVAEKKRKLRERQAQWDTQQVAIMNPLN"
FT   CDS           0..0
FT                 /product="Gypsy-16_DR2p"
FT                 /translation="EKTQVKGATSPVGYPTSSNHESFKLRTVSVEGHTETK
FT                 RNNNCPEKRKQLFNQNACDAPPLRNLPRGLVGVKCTAQITVGNKRVSCLLD
FT                 TGSQVTTVPWSFYQENLSNCPLKSLDNLLEVEGANGQTVPYLGYVELTLKF
FT                 PREFLGTETEVPTLALVVPDLMNTPQVLIGTNSLDALYSNYVQQSASFPQS
FT                 NFHGYRAVQKVLEARYKQASADVVGCIKFKGHVPEVVPAGCTVVLDGHVLV
FT                 NCPHVGKCVALESPTSPALPGGLLVASCLHSLPSKRHQQLPVVLRNETQTD
FT                 ITIYPRTIIAEMRAVQEVIKSGQVNSSTVNKELSACSNLKFDFENSPLTPE
FT                 WKKRITDQLNSMPEVFALHDLDYGHTNKVTHRIKLNDETPFKHRPRPIHPQ
FT                 DIDAVRKHLQDLLAAGIIRESESPFASPIVVVRKKDNSVRLCIDFRKLNSQ
FT                 TIKDAYALPNLEEVFSALTGSKWFSVLDLKSGYYQIEMEEADKSKTAFVCP
FT                 LGFWEFNRMPQGITNAPSTFQRLMERCMGDLNRKEVLVFIDDLIIFSESLE
FT                 EHESRLMHVLKRLKEYGLKLSPEKCKFFQTSVRYLGHIVSENGVETDPVKI
FT                 EALKTWPRPRNLKELRSFLGFSGYYRRFIQDYSKIIKPLNDLTVGYPPLQK
FT                 RHLQENKNKQYLDPKKEFGDRWNQPCQQAFDMIIEKLTSAPVLGFADPKLP
FT                 YVLHTDASTTGLGAALYQKQEGQMRVIAFASRGLTRSESRYPAHKLEFLAL
FT                 KWAVTSKFSDYLYGTEFVVVTDSNPLTYILTSAKLDATSYRWLSSLSTYNF
FT                 KLQYRAGSQNCDADGLSRRPHGELLDDPASQKERERIKQFTLHHLDEFGVE
FT                 DSLILPEAIKAICDRHQIGNSSHKCKFSNPSIALVESLALHADVLPNEFEQ
FT                 ENEHGLPVIPYLSNEELKRQQRMDPDLKFIIDCLQRNEKPSSSKDQSLAVT
FT                 LWIREWSRLELRDGLLYRKKQDQESTHYQLALPVALRGTVLKSLHNDMGHM
FT                 GMERTLDLVRTRFFWPKMSSSVEEKIKTCERCVRRKAFPEKAAEMMNIKTT
FT                 RPLELVCMDFLSLEPDQSNTKDILVITDHFTKYAVAVPTRNQKAQTVARCL
FT                 WENFLVHYGFPERLHSDQGRDFESSLIKELCLVAGIHKVRTTPYHPRGNPV
FT                 ERFNRTLLQMLGTLENKKKSCWKEFVKPLVHAYNCTRNDVTGYTPYELMFG
FT                 RQPRLPVDLAFGLPVDRSTKSHSQYVKDLKEGLRESYEIAIKNSAKVAQRN
FT                 KRRFDKHVVVSTLDVGDKVLVRNLRLRGKNKLADKWEPDVYVVIRKAGDLP
FT                 VYVVQPDGKTGPVRTLHRDLLRPCGYLSENEIEEMSPPNVQRKPRTRSSSA
FT                 LEYAPKEHQMSDQSESEDDSLYIRNAGRQLESITTTVLPSSQSPVLVRNLP
FT                 GIEPIEPLPVVVNPEKETLPDSRLEEDLTENQRDDVNENFLPVLNPADIDP
FT                 KEIEPERSGNSVEVQIHRRALELDPVDVPHSNDQNPHVRNVSSNQPIVDED
FT                 LDTSGPRRSKRQCRPPNKLEYHKLGNPLTLVIQSLLQGLSSAFTTSLEEPI
FT                 LTRDQPFVVPDPFPIAVTTQPRTCPRTCLNSGGE"
XX
SQ   Sequence 6775 BP; 2156 A; 1428 C; 1416 G; 1775 T; 0 other;
     taccaaaaag tggcgagagc cagccaggag agagattgca acaacagtgt ctaattacag        60
     tattcgagtt cactataaat attacaaatc ggagagaact ttaacgtcat ggatatcata       120
     gaaaaagaga atgtagatat ctcaaaagca gtaattgtgg gtggaatgac actgactgag       180
     acagactcag atttagagtc atggctttta agatatggta gtattaaccg acatcttcta       240
     attgatgacc ctgactgtga gtttcatcga catgctatca tagagtttac acataactcc       300
     gcgatgaaaa cattgatgcc tcttttgcct ttaactgtag ttagtatgtc aaacccaagt       360
     accactttca tggtacgtgc tttaagctgc gtttaccccc atattgctag tgatagtgct       420
     actaatggat atctggagga attgcaaaac attgctagtt ttagtgggaa atccattgag       480
     gaagtactcc aaacagagtt actgaagatt aaatttggtc cttctcatgc tgagtcacta       540
     cctgttttgg ataaaaagct tgaatttcca aatgcagcac gttctcaaat acttgatcgt       600
     agcacagtca gttcaccaaa tagactgctg tccccagtca tatcacaaag tatgattact       660
     gaacaaacag cttttccttc atctagaatt tcaccatttc atgaagttga atcaacaaat       720
     tcaaaaaacc tgtccaagga aagccttaac catagaagta ctaaacccac agtaacagtg       780
     tcatcccatc cagcacttac catggatata attgatcctc ctagcgtgca aaaggtagta       840
     gttgagcaca ttgtccgcac aaatgacaca gctccaatgc accatacctc ttttcgcctc       900
     cgatctttct ctggaaaaat tcctagacct gttaatgagc cagattttga cacttggcgt       960
     gccagtgttg atctcctact gacagatcct tctatatctg acttaaatcg agccagaaaa      1020
     atcatagaca gtctgcttcc ccctgctgca gatattgtta aacatgtctc ccctaacagt      1080
     ttacctgcag tatatctgga attgctggag tctgtatatg gctctgtaga agacggagat      1140
     gagttattag ccagatttat gaatagcttc caaaacaatg gtgagaagcc ttcaacttac      1200
     ctgcacagat tacaagttct cttaagcaca gctattcgac gaggtgggat atttgaagaa      1260
     gagagaaacc gatatcttct aaagcagttt tgtcgcggct gttgggacag ttccctcatt      1320
     gctgaccttc aattagaaag gagaaaagcc actcctcctt catttgcaga attagtagtt      1380
     ctcatccgta cagaagaaga taaaaatgcc tctaaagaag aaagaatgag aaaacattta      1440
     gggctaaata aacactatcc tgccccctcg aaattcagac tgtcagctca ccagatatct      1500
     gcccaccaaa gtgaaacgca ggatgatcaa actgacacat ctctcgcaaa gcaagtgtgt      1560
     gaacttcaag ctcaagttgt tgcactgcaa aagccttcaa gccagaaaga aaagaaaaaa      1620
     aatgcaaaac cagatgaagt gagtgagctg agaaatgttg tcactgagtt acaggcacag      1680
     attacagcca tgcaaactac agccactcca aaaattaaaa gtgatgtaga agcaactgaa      1740
     attgctgact taaagagaca gattgctgat ttaaaggttc aactgactgc ccctgatatg      1800
     tatagaaacc gcaccagaaa cttgctgcct gaacctagag caacagattg ttacagagct      1860
     agtaaactac ctgaaagtag acctcgtccg gggtattgtt ttagatgtgc ggaagatggt      1920
     catcttgcca gcagctgtag taatgctcct gaccctacta aagttgctga gaaaaaacgc      1980
     aagttaaggg agcgacaagc ccagtgggat acccaacaag tagcaatcat gaatccttta      2040
     aactgaggac ggtctctgta gaggggcata cagagactaa aagaaataat aattgccctg      2100
     agaaacgtaa acaattgttc aaccaaaatg cgtgtgacgc accccctttg agaaatttac      2160
     caagaggatt agtgggagtg aagtgtactg cccaaataac tgttggtaat aaaagagttt      2220
     cctgccttct ggacacaggg tcccaagtaa ctactgttcc ctggtcattt tatcaagaga      2280
     atttatcaaa ttgtccactt aaatcattgg ataacttgct ggaagtggaa ggggcaaatg      2340
     gtcaaacagt gccttatctt ggatatgtgg aattgactct taagtttccc agagagttcc      2400
     ttggaacaga gacagaagtg cccactttag ccctggtagt cccagatttg atgaacactc      2460
     cccaagttct aattggcaca aattcattag atgctcttta cagcaactat gtccaacaat      2520
     ctgcttcctt tcctcaatct aacttccatg gttaccgtgc agtgcaaaaa gttttagaag      2580
     caagatacaa acaagcaagt gctgatgtag tgggctgtat caaattcaag ggacatgttc      2640
     cagaggtagt acctgcagga tgtacagtgg ttcttgatgg acatgttcta gttaattgtc      2700
     ctcatgtagg gaaatgtgta gctctagagt caccaacttc acccgcttta cctggtggtt      2760
     tgctagttgc cagctgtttg cattccttac ccagcaaaag gcatcaacag ttaccagttg      2820
     tgttacggaa tgaaactcag accgacatta ccatctatcc cagaactata attgctgaaa      2880
     tgcgggcagt ccaagaagta ataaagagtg ggcaagtaaa ttccagcact gtcaataaag      2940
     aactttctgc ttgttccaat ctcaaatttg actttgaaaa ttccccattg acacctgaat      3000
     ggaagaaacg aataacggat caattaaatt ccatgcctga agtcttcgcc ttgcatgact      3060
     tagattatgg acatacaaac aaagtcactc accgaataaa gcttaatgat gagactcctt      3120
     tcaaacacag acctcgaccc atacatcctc aggacattga tgcagtacga aaacatttgc      3180
     aagacttgtt agcagctgga attatccgag agtcagaatc cccctttgcc tcccccatag      3240
     tagttgtaag aaagaaagac aattctgtac gtctttgcat tgacttcaga aagctgaact      3300
     cacaaaccat taaagatgcc tatgccctgc caaatctgga agaggtcttt tcagcactaa      3360
     ctggttcaaa atggttctct gtccttgact taaaatcagg atattatcag attgagatgg      3420
     aggaagctga caaaagtaaa actgcctttg tgtgtccctt ggggttctgg gagttcaata      3480
     ggatgcccca aggcattacc aatgccccaa gtacgtttca aaggctgatg gaaagatgca      3540
     tgggtgactt gaatagaaaa gaggtgttgg tcttcatcga tgatctgatc attttctctg      3600
     aaagtttaga agagcatgaa tcaaggctga tgcacgtttt gaaaaggctc aaagaatatg      3660
     gactgaagct atcgcctgaa aagtgcaagt ttttccagac ttctgttcga taccttggtc      3720
     atattgtatc agaaaatgga gtggagactg atccagtgaa aatcgaggcc ctaaaaacct      3780
     ggccaagacc aagaaatctc aaagaattaa gatcttttct gggattttct ggatactata      3840
     ggaggttcat tcaggattat tccaagataa tcaaacccct taatgacctc acagtagggt      3900
     atccacctct tcaaaaacgt cacctacaag agaacaagaa taagcaatat ctggacccca      3960
     aaaaggaatt cggagacaga tggaatcagc cctgtcaaca ggcctttgac atgattattg      4020
     agaaactcac ctctgcacct gttctgggat ttgcagaccc aaagcttcct tatgttctgc      4080
     atactgacgc cagtaccact gggcttgggg cagccttata ccagaaacaa gagggacaaa      4140
     tgcgggtcat tgcttttgca agcagagggt tgacaagaag tgaaagccgg tatccagctc      4200
     acaagctaga atttctagct cttaaatggg cagtcacatc taaattcagt gactatttgt      4260
     atggaacaga atttgtggtc gtaactgata gcaacccttt aacttacatt ctgacatctg      4320
     caaagcttga tgctaccagt tatcgctggt tgtcaagtct gtccacttac aatttcaagc      4380
     tccagtatag ggctggaagt caaaactgtg atgcagatgg cctttcaaga cgaccacatg      4440
     gtgagctttt agatgaccct gcatctcaga aagagagaga gagaattaaa cagtttaccc      4500
     ttcatcattt agatgaattt ggagttgaag attctcttat cctcccagag gccataaaag      4560
     ccatctgtga tcgacatcag attggaaatt cctcacataa atgcaaattt tccaaccctt      4620
     ccattgccct tgttgagtcc ttagccctgc atgcagatgt attaccaaat gagtttgaac      4680
     aagaaaatga gcatggtctt ccagtcattc cttacctgtc caacgaggag ttaaagagac      4740
     agcagagaat ggatcctgat ctcaaattca ttatcgattg tttacagcgg aatgaaaaac      4800
     cttctagttc aaaagaccag tcgcttgctg ttactctgtg gataagggaa tggagcagat      4860
     tagaattaag ggatggattg ctttatagga agaagcaaga tcaggaaagc actcactatc      4920
     aattagcctt acctgtagct ttacgtggaa cagtgttgaa gagtctccat aatgatatgg      4980
     gacacatggg catggagagg acacttgacc ttgtcagaac cagattcttt tggccaaaaa      5040
     tgtcatcatc tgtggaagag aaaattaaga catgtgagag atgtgtacgt agaaaagcgt      5100
     ttcctgaaaa agcagctgaa atgatgaaca tcaagactac cagaccattg gagttggtct      5160
     gtatggactt cttgtcttta gagccagatc agagtaacac caaagatata ttagttatta      5220
     cagatcactt caccaaatat gcggtggctg tgcctaccag aaaccagaag gcgcagactg      5280
     tggctagatg tttatgggaa aactttctag tacattatgg atttccggaa agactgcaca      5340
     gtgatcaagg acgagatttt gagtcaagcc tcatcaaaga gctatgtctc gtcgcaggta      5400
     tacacaaagt gagaactact ccttaccacc caagaggaaa tccagtggag agattcaata      5460
     ggacccttct ccaaatgttg ggtactcttg aaaacaaaaa gaagtcatgc tggaaggagt      5520
     ttgtcaagcc tttggtgcat gcctacaatt gcactcgaaa tgatgtaaca ggatacactc      5580
     cctatgaact tatgtttggt agacagccca ggctgccagt cgacttagcc tttgggttac      5640
     ctgtggatcg ttctaccaaa tcccactctc agtatgtaaa agatctgaaa gaaggtttaa      5700
     gagagagcta tgaaattgcc atcaaaaact ctgcaaaagt agcccaacgt aacaagcgca      5760
     gatttgacaa acatgtggtt gtttctactc ttgacgtggg agataaagtc cttgtgcgaa      5820
     atttgaggct aagaggcaag aacaaactgg cagacaaatg ggaaccagat gtctatgtag      5880
     ttatccgtaa agctggagat ctcccagtat atgtagtcca gcctgacgga aagaccggtc      5940
     cagttcgaac tttacacaga gacttacttc gaccttgtgg atatttgtct gaaaatgaaa      6000
     ttgaagaaat gagtcctcca aatgttcaac gtaagcccag aactaggtct agctctgctc      6060
     tagaatatgc tcccaaagaa catcaaatga gtgatcagtc agaatctgag gatgactctc      6120
     tatatattag aaatgcagga cgccagttgg aatccattac aacgactgtg ttaccttcat      6180
     cacaaagtcc agtgcttgta aggaacttac ctggcataga gcccattgaa ccactccctg      6240
     tcgtggtgaa ccctgaaaaa gaaaccttac ctgattccag attagaagaa gacttaactg      6300
     aaaatcaaag agatgatgtc aatgagaatt tcttacctgt gctgaaccct gctgatattg      6360
     accccaaaga aattgaacct gaaagaagtg gaaatagtgt tgaagtacag atccatagaa      6420
     gggcgcttga attagatcct gttgatgtac cccattctaa tgatcaaaat cctcatgtca      6480
     gaaatgtttc aagtaaccag ccaatagtgg atgaagacct agataccagt ggccctagac      6540
     gctcaaaaag gcaatgtaga cctcctaata agcttgagta tcataaacta ggaaatccct      6600
     tgacactagt cattcagtcc ttactacaag gtctgagttc tgcctttacc acatcgttag      6660
     aagaacccat actcactaga gatcagccct ttgttgtgcc agaccctttt ccaattgcag      6720
     tgacaaccca accccgtaca tgcccgagga cgtgcctgaa ttcagggggg gaatg           6775
//
ID   CR1-1_DR    repbase;    DNA;    ZEB; 4985 BP.
XX
AC   .
XX
DT   02-MAY-2002 (Rel. 7.04, Created)
DT   02-MAY-2002 (Rel. 7.04, Last updated, Version 1)
XX
DE   CR1-1_DR is a CR1-like non-LTR retrotransposon - a consensus.
XX
KW   AP endonuclease; CR1 clad; CR1-1_DR; CR1DR1; ORF1; ORF2;
KW   Non-LTR retrotransposon; reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   311-4303
RA   Jekosch K.;
RT   "CR1DR1: CR1-like repeat from Danio rerio.";
RL   Repbase Reports 2(2), 7-7 (2002).
XX
RN   [2]
RP   1-4985
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-1_DR, a family of CR1-like non-LTR retrotransposons in
RT   zebrafish.";
RL   Repbase Reports 2(4), 6-6 (2002).
XX
CC   [2] (Consensus)
XX
CC   CR1-1_DR is a family of CR1-like non-LTR retrotransposons and it
CC   was active in zebrafish recently. The consensus sequence encodes
CC   two proteins, CR1-1_DR1p (position 311-1216) and CR1-1_DR2p
CC   (positions 1220-4300).
CC   The 1027-aa CR1-1_DR2p protein is composed of AP endonuclease
CC   (aa positions 72-225) and reverse transcriptase (aa positions
CC   559-796). The 302-aa CR1-1_DR1p protein is distantly related to
CC   proteins encoded by ORF1 in known CR1-like elements from chicken,
CC   pufferfish and turtle.
CC   The consensus sequence [2] was reconstructed from 10 copies
CC   that are ~1% divergent from it.
CC   Approximately 1000 copies of CR1-1_DR are present in the
CC   zebrafish
CC   genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           311..1216
FT                 /product="CR1-1_DR1p"
FT                 /translation="MSLPSLSLCAGEASMEALELELEEVESQIRALVVRRS
FT                 RLREQLLVVPNAKAVSSPKVRGNYNHIIPSTSTPRPSLSRPSAPGARLSQA
FT                 SFTPTPGYHGAWVQPRKVLPRSRGRTSPPVFEISTENRFSPLRESGPDVAI
FT                 IGDSIVRHVRAASSKGNKVRTFCFPGARVRNISTQIPTILGAAESPGAVVL
FT                 HVGTNDTGLRQSEILKKDFRSLIETVRRTSPATQIIVSGPLPTYRRGNERF
FT                 SRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDGLHPSRAGAELLS
FT                 DNISRLLRTI"
FT   CDS           0..0
FT                 /product="CR1-1_DR2p"
FT                 /translation="CVSGACLDNSVFIRCLQNKQEPSVSVAFSTQICVLLR
FT                 DRKPKTLSDRIANHSNLVSIKCISETSVVKTTKLAGKNSQNSHYSHLDSCS
FT                 PHLNISNAYLANPIETVSVPRIIRLRNKRTVCSRKNLVRIKPEKPVESENT
FT                 NFVKLGLLNIRSLAPKALIINEIITENNLNALCLTETWLKQNDYISLNEAT
FT                 PPGFLYKHEARQTGRGGGVASIFSDFLNIKQRNGLMFSSFEVLSLNVQLPD
FT                 TIQKPMLSLALITIYRPPGPYVKFLKEFSDFISDLLVKTDKMLIVGDFNIH
FT                 IDDANDTLGLAFMDLIHSLGIKQNVVGPTHRLKHTLDLILSYGIEVIDVDI
FT                 IPQSDDITDHYLLLYKLCLPEISKPAPILRPSRTIVPSTKDEFINNLPDLS
FT                 LFRNAPANSNDLDVVTSSMDAIFTSTLNTVAPIKLKKAREIKTIPWYNSHT
FT                 RALKTATRALERKWKKTNLEVFRIAYKDSMSSYRRALKSARTEHLRKLIEN
FT                 NHNNPRFLFNTISKLANNRSSLEQTTPPQISSDDFMNFFSNKIEGFRQKIG
FT                 DAKLSAPAYTPNPVNISLNHNNNLHCFKIIEHEELVKIINSSKPATCMLDS
FT                 IPTKLLKELLPAIGEPLLNIINSSLSIGHVPNSYKLAVIKPIIKKPQLDTN
FT                 NLANYRPISNLPFMSKILEKVVSTQLCSFLQTNNIFEVFQSGFRAHHSTET
FT                 ALVKITNDLLLAADRGCVSLLVLLDLSAAFDTIDHNILINRLKSTGVQGQA
FT                 LQWFKSYLTDRYQFVNLNGQPSQICPVKYGVPQGSVLGPLLFTIYMLPLGD
FT                 IIRRHGISFHCYADDTQLYISTKPDETSELSKLTECIKDIKDWMTNNFLLL
FT                 NSDKTELLLIGPKSCTQQISQLNLQLEGYKVSFSSTIKDLGVILDSNLTFK
FT                 NHISHVTKTAFFHLRNIAKLRNMLSISDAEKLVHAFMTSRLDYCNALFAGC
FT                 PASSINKLQLVQNAAARVLTRSRKYDHITPILSSLHWLPVKFRIEFKILLL
FT                 TYKALNNLAPVYLTNLLSRYKPTRSLRSQNSGLLVVPRIAKSSKGGRAFSF
FT                 MAPTLWNSLPDNVRGSDTLSQFKTRLKTYLFSKAYTQCIT"
XX
SQ   Sequence 4985 BP; 1464 A; 1202 C; 916 G; 1403 T; 0 other;
     cgtcactggc gtcactgtct ccgttcggtc acatactgcg tgtgcttgaa gtttggactt        60
     gctatttact cgcaatttaa atcttaatca taaaattctt cctcattcgc taagtatttg       120
     tctctcctac ttagggtgac caaaccctta atacatttat acaaacaaaa ctgctttaaa       180
     aacggtctgt ccctcgagca tccgcctgtt gtttgtagct ttagcctgct agcgccgctg       240
     gtcagctaaa gctaccgacc tcttttacca tacacttttg acttactggc tttgctcttt       300
     accccgtaaa atgtcgcttc cgtctctgtc cttgtgtgca ggagaagcat cgatggaggc       360
     gttggagctg gagctggaag aagtggagtc ccagatccgc gcgctggtgg tgagacggtc       420
     gcggctacgg gaacaactcc ttgttgtacc taatgctaag gccgtctcat cacctaaggt       480
     acgtggaaat tacaaccaca tcattccctc tacctcaacc ccgcgtcctt ctctgtccag       540
     gcccagcgca cccggggcgc ggctcagcca ggcgtcgttc acgccgacac ccggctacca       600
     cggcgcctgg gtgcagccgc gcaaggtgct tcccagatcc cggggcagaa cgtctcctcc       660
     tgtgttcgag atctccacgg agaaccgctt ctcccctctc cgcgagtcgg gtcccgatgt       720
     ggccatcatc ggtgactcga tcgttcgtca cgtccgtgcc gcctcctcaa aaggtaataa       780
     agtacgtact ttctgctttc ctggtgcccg tgtgagaaat atttctacac agattccaac       840
     catcctgggc gctgccgaga gccctggtgc cgttgtcctc cacgtgggga caaacgacac       900
     cgggctccgg cagtcggaga tcctgaagaa ggacttcagg agcctgatcg agacggttcg       960
     acgcacctcg cccgccacgc agatcatcgt ttctgggccg cttcctacct accgccgagg      1020
     aaatgaaagg ttcagtagac ttttagctct gaatgaatgg ctaataacat ggtgtaaaga      1080
     acagaaattg ctctttgcta ataactggaa tcttttctgg gagcgtccta ggctcttccg      1140
     tcctgacggc ctgcacccca gtcgagccgg agctgaactc ctgtcggaca acatctccag      1200
     attacttcgc accatctgac tagcaggtaa aaattcacaa aattcacact atagccacct      1260
     agactcttgt tcaccccact taaacatcag taacgcatat ctggcgaatc ctatagagac      1320
     tgtgtctgtt cctcgtatta ttagattaag aaataaacgt actgtgtgct ccagaaaaaa      1380
     tctagtaaga atcaaaccag aaaaaccagt agaaagtgaa aatacaaatt tcgtaaaact      1440
     tggtctccta aacatcaggt cacttgcacc taaagcactt atcattaatg aaataataac      1500
     agaaaacaat cttaatgcac tctgtctcac tgaaacctgg ctgaaacaaa atgactatat      1560
     tagcttaaat gaagcaactc ctccaggatt cttatataaa catgaggctc gtcaaactgg      1620
     tcgtggtggt ggagttgcat caatctttag tgatttcctt aatattaaac agagaaacgg      1680
     acttatgttt agctcctttg aagtattatc gcttaatgtt cagcttccag atactataca      1740
     aaaacctatg ttatctctcg ctttaatcac catatataga cccccaggac cctatgtcaa      1800
     atttctaaaa gaattttctg attttatttc tgacttacta gtcaaaactg ataaaatgct      1860
     aattgtaggt gactttaaca tccacataga tgacgctaat gatacattag ggctcgcgtt      1920
     tatggattta atacactcac ttgggataaa gcaaaacgtt gtgggtccaa cccatcgctt      1980
     aaagcataca ttagatctaa ttctgtctta tggaatcgag gttattgacg tagacattat      2040
     accacaaagt gatgatatta cagatcacta cctcttacta tataagctgt gtttacctga      2100
     aatcagcaaa cccgctccaa tactccgccc tagtagaact attgttccgt caactaaaga      2160
     tgaatttata aataacttac ctgatctttc tctatttcgt aatgcacccg caaactcaaa      2220
     tgatcttgat gtagtaacca gcagtatgga tgccatcttt actagcacac taaatactgt      2280
     ggcacccatc aaattaaaaa aggctagaga gattaaaact ataccatggt ataatagtca      2340
     tactcgtgcg ctcaaaacag caacccgtgc cctggaacgt aaatggaaaa aaactaattt      2400
     agaggtcttt agaattgcgt acaaagacag tatgtccagc tataggaggg ctctaaaatc      2460
     tgccaggacc gagcacctgc gcaaactgat agaaaataat cataacaatc ctagattttt      2520
     atttaacacc atctctaaat tagcaaataa tcggtcatcc ttggaacaaa ctactccacc      2580
     gcaaattagt agtgatgact tcatgaattt tttcagtaat aaaatagaag gctttagaca      2640
     gaaaatagga gatgccaaac tttctgcacc ggcttatact ccaaatcctg taaatatttc      2700
     attaaatcat aataataacc tacactgctt caaaatcata gaacatgaag agttagtaaa      2760
     aattataaat agctctaaac cagctacgtg tatgctggac tcaattccaa caaaattact      2820
     gaaagagctg ctacctgcta taggagaacc tcttcttaac attatcaact cttctttatc      2880
     tataggccat gttccaaact cttacaagct agctgttatt aagcctatta ttaagaaacc      2940
     gcaactagac accaacaact tagctaacta taggcctatt tcaaatcttc catttatgtc      3000
     taaaatacta gaaaaagttg tttccactca attatgctct tttctgcaga cgaacaatat      3060
     ttttgaagtg tttcagtcag gtttcagggc tcaccacagt acagaaaccg ccttagtgaa      3120
     aataaccaac gatttactct tagctgctga ccgagggtgc gtctcgctat tagttttact      3180
     cgatcttagt gcggcatttg ataccattga ccacaatatc ctcataaatc gcttaaagtc      3240
     tacaggtgtc cagggacagg ctctacaatg gtttaagtca tacttaactg accgctacca      3300
     gtttgtgaat cttaatggac agccttcaca aatctgccca gtaaagtatg gggtgcctca      3360
     aggatcagtt ttaggccctt tactgtttac aatttacatg ctacctctgg gagacattat      3420
     tagaagacat gggatcagct ttcactgcta tgcagatgat actcaattat atatttcaac      3480
     taaacctgac gagacgtctg aactttctaa actaactgag tgtatcaaag acatcaaaga      3540
     ctggatgacc aacaattttc ttctcttaaa ctcagacaaa acagaattat tacttattgg      3600
     gcctaaatct tgcacacagc agatctcgca actcaattta caattagagg gatacaaagt      3660
     tagctttagc tctactataa aagatctggg tgtcatatta gacagcaatc taacttttaa      3720
     aaaccatata tcccatgtca caaaaactgc cttctttcat ctgagaaata tcgctaaatt      3780
     acgaaatatg ctatccatct cagatgcaga aaagctagtc catgctttta tgacttcgag      3840
     actggattac tgtaatgctc tatttgctgg ctgcccagca tcctctatta acaaacttca      3900
     attagtacaa aatgcagcag ccagagttct gaccaggtct agaaaatatg atcatataac      3960
     cccaatttta tcctccttac actggctgcc tgttaagttt cgtattgaat ttaaaatatt      4020
     acttctcacc tataaagctc taaataatct agctcctgtt tatctaacca accttctgtc      4080
     tcgctacaaa ccaactcgct ctttaagatc tcaaaattca gggcttctgg tagtacctag      4140
     aatagcaaaa tcaagtaaag gaggtcgagc cttctctttc atggctccta cactctggaa      4200
     tagccttcct gataacgtcc gaggctcaga cacactctcc cagttcaaaa ctagattaaa      4260
     gacctatctg tttagtaaag catacactca atgcatcacc tagcgggttc cacacaggct      4320
     tctgcatctt gcttatatac actatgaaca gcagctacgc taattattct ctttattctc      4380
     tattttcacc tggggatact catcccgagg tcctcagatt atgcggagtc actgattgga      4440
     tccaagacca gcgacgtgat gatcccaagg attccatatc cgggaccagg ccatatcctg      4500
     agctgctgct gcgctgatgg tcgtggggag tggagaacat gagtctgatt ccagcgacgc      4560
     tccagggaca gacgagtctt cgctgaggcc atcttccagc ctaaaccacg gcgaatgaag      4620
     ctctgcacaa gacttttggc cagcggagaa attaaaatgg tcgtgcccaa ctgagtctgg      4680
     ttctctcaag gttttttttc ttcactccca tcaggtgaag ttttttttcc ctctccgctg      4740
     tcgccactgc ctcgcatggt tcaggattgg tagagctacg catcgatgaa tttgctcttc      4800
     agtgtttgaa ctctcagtaa tgattaaatc acactgaact gagctaaact gaactgaact      4860
     gaacttaaac actaaaacct gaaccacact gttccagtta ctatgaccat ttatgtgaag      4920
     ctgctttgac acaatctaca ttgtaaaagc gctatacaaa taaagctgaa ttgaattgaa      4980
     ttgaa                                                                  4985
//
ID   Gypsy6-I_DR repbase;    DNA;    ZEB; 5410 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.1, Created)
DT   17-NOV-2004 (Rel. 9.1, Last updated, Version 1)
XX
DE   Gypsy6-I_DR is an internal portion of the Gypsy6_DR LTR
DE   retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   GYPSY superfamily; Gypsy6-I_DR; Gypsy6-LTR_DR; Gypsy6_DR;
KW   endogenous retrovirus; gag; pol.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-5410
RA   Kapitonov V.V.;
RT   "Gypsy6_DR LTR retrotransposons from zebrafish.";
RL   Repbase Reports 4(10), 261-261 (2004).
XX
CC   [1] (Consensus)
XX
CC   Gypsy6-I_DR is an internal portion of the Gypsy6_DR LTR
CC   retrotransposon, whose LTR is deposited in Repbase as
CC   Gypsy6-LTR_DR. This retrotransposon belongs to the Gypsy
CC   superfamily. Some copies of Gypsy6_DR are flanked by identical
CC   LTRs. The internal portion encodes the 354-aa Gypsy6_DR1p gag
CC   (pos. 160-1221) and the Gypsy6_DR2p 1418-aa pol (pos.
CC   1092-5345) polyproteins. The polyprotein is composed of the
CC   protease, reverse transcriptase and integrase domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy6_DR1p"
FT                 /translation="MEDELRELRELVTQLKADNERLRQEQVPAALPGPSNI
FT                 SIPVVSDPPLIDAGPSSTDRFVFVPRDRKCPKFSGRSGIDINEWVEEAEAC
FT                 MRLRHLSSADRAFFLFDHLEGEAREEIRYRPQSEREDPKRVIQVLRDLYGC
FT                 TKSYVALQESFFSRRQQEGETLEFSLALMSLLEMVKGQSPHGMPNAEILLR
FT                 DQFVENVNDCTLRRELKQFVRRQPTATLVDVRGEALRWEREGMPGGARGRS
FT                 QSVPSVYGIQYGVQGNRSVSSGAKSEMTELRDMLLKQQQQLNQLVQSMSLL
FT                 QSCSPSLPPPKVNPVICRRCRQPGHFARNCDGGRMSVRAPSAQITSALTRR
FT                 EQSSSSQPSEN"
FT   CDS           0..0
FT                 /product="Gypsy6_DR2p"
FT                 /translation="MSSARPFCEKLRWWADVGPCTISPNNFCFNKTRTVIL
FT                 QPAVGKLVPTKLQGHNLVGKRVGSNDHMPCLMSTCPKLVVTIGGVQVPCLV
FT                 DTGSMVSTITESCFMTNFGLWGQEQLRSCHWLQLRAANGLSIPYIGYLELD
FT                 IELCGRVVSGCGVLVVKDPPGGMCAQTPGVLGMNVLSRCYQELFGQHGTGL
FT                 FDLPAVSQAPSFIFQALQNCHQAGVQPVKDAEGQVRVRGRRACRIPGGTVK
FT                 FVATTCSVQYSGNAVLFEPPISGLPAGLLASPALLKVDGGTVYVPIVNVGT
FT                 MDVVLYARTIVGVVSKVDVVALPPEVAEVNMVAARVSAQSSPSVQEQIATL
FT                 DLSKLPEVEQGKVRALLLKYLPVFSSYDGDLGCTNLISHDIPLLDEIPVRQ
FT                 RFRRIPPSEYEVVKAHINQLLETQVIRESSSPYASPIVLVKKKDGGLRMCV
FT                 DYRRLNAKTRKDAFPLPRIEETLDSLAGACWFSTMDLASGYNQVPVTEKDK
FT                 PKTAFCTPFGLFEWNRMAFGLCNAPSTFQRLMERLFGDQQCQSLLLYLDDI
FT                 IVFSSSIDEHLARMEVVLSRLQREGLKAKLSKCAFFQREVRYLGHVISSEG
FT                 VSTDPGKVEAVANWPCPTSVTELRSFLGFASYYRRFVEGFSKLAAPLHRLV
FT                 AQLANPKQRKGNAHDFAASWSTECQSSFEGLKIKLTSAPVLAYADFSLPFI
FT                 LEIDASQGGLGAVLSQEQQGKVRPIAYGSRSLRPTERNPSNYSSMKLEFLA
FT                 LKWSMTEKFREYLLGQKCIVFTDNNPLSYLNSAKLGVMEHRWAAHLSAFDF
FT                 EIKYRSGRSNRNADTLSRQNFSSTGEVQGLCPGVAVPAVLQQVAPDGLVTQ
FT                 VNQVTAFPCPSGSDMGALQEADTVIGEVLVFWRRKLLPTSEERKQLSRLAV
FT                 ILLRQWGRLVEIEGVLYRRVSRPDGGEEVLQVLLLAVMKTEVLTQLHQQHG
FT                 HQGVERTSQLVRQRCYWPGMFADIARWCQECERCQCAKGTPSAPSSFMGHL
FT                 LASRPNEILALDFTLMEPSRSGLENVLVMTDIFTKYTLAIPTRDQRAETVA
FT                 QVLVAEWFCKFGVPGRIHSDQGRNFESTLIQQLCGLYGVVKSRTTPYHPAG
FT                 NGQCERFNRTLHDLLRSLPPSKKSDWPLCLPQVLFAYNTTPHQSTGESPYY
FT                 LMFGQEPKLPIDFLLGRVKEPSAGSVHGWIVEQQDRLQVAFEGARERLGAA
FT                 ADRRKARHDLQVREAPLKEGQLVYLRDHSVRGRCKIQDLWSSVVYQVLKAP
FT                 TESGVVYTIAPVADLSKTKHVHRSLLKAQLGPNLLPSPPEPAMGDGMQPSD
FT                 EECDGDLLVLVPETPELRGRSRSQGSVPPVPRVVDEELEGRATGETVQPEV
FT                 VPSNPVRAAEVVVRRTVRSTAGQHSNLHHLPRAVGTGTVSSIATNPFGTFF
FT                 RPWD"
XX
SQ   Sequence 5410 BP; 1239 A; 1187 C; 1482 G; 1502 T; 0 other;
     ttctggcgta gtcggcagga ttccccctca ttgtgtgcag agacgtgtgt ttgtttttgt        60
     atattttcat ttttgtagga attgaattgc ggcagtctcc ctcccctatt ctttttggtg       120
     agtcaacaaa cgttgacttt ttgcttgtac gttgtagcaa tggaagatga attgcgtgag       180
     ttaagggagt tggtaactca attaaaagct gataatgagc gactacggca agagcaggtg       240
     ccagctgcac tgccgggtcc atctaatatt tctattcctg ttgtttcaga tcctcccctc       300
     attgatgctg gtccctcgtc aaccgaccga tttgttttcg ttcctcgaga ccgtaaatgt       360
     ccaaaattca gtggccggtc cggaattgac atcaatgagt gggtggaaga agcagaggct       420
     tgtatgcgtc ttcgccattt gtcttcagct gatcgggcat ttttcttgtt tgatcacctg       480
     gagggagagg caagagagga aattcgttat aggccacaga gtgaaaggga ggatccaaag       540
     cgggtgattc aggtattgcg cgatctatat ggctgtacta agtcttatgt agctcttcag       600
     gagtcattct tttccagaag acagcaggaa ggggagactt tggagttttc cttagccctg       660
     atgagccttc tggaaatggt taaaggtcag tcacctcatg gcatgcctaa tgcagaaatt       720
     ttactgcgag atcagtttgt ggaaaacgtt aatgattgca cccttcgtcg tgaacttaag       780
     cagtttgttc ggcgtcaacc tactgccaca ttggttgacg tacgtggtga agcacttcgg       840
     tgggaaagag agggcatgcc tgggggagcg cggggccgaa gtcagtctgt tccatcagtt       900
     tatggtattc agtatggggt gcaggggaat cgaagtgtta gtagtggggc aaagtctgaa       960
     atgactgaat tgcgggacat gttgctgaag cagcagcaac aattaaatca actagttcaa      1020
     agtatgtctc tgcttcagag ttgttcaccc agtttgccgc cacctaaagt taaccctgtt      1080
     atttgcagaa gatgtcgtca gccaggccat tttgcgagaa attgcgatgg tgggcggatg      1140
     tcggtccgtg caccatcagc ccaaataact tctgctttaa caagacgcga acagtcatcc      1200
     tccagccagc cgtcggaaaa ctagttccca ccaagttaca gggccataac ttggttggga      1260
     aaagggtagg ctctaatgat catatgccgt gtttaatgtc tacatgtccg aagctcgttg      1320
     taactatagg tggggttcag gtcccttgtt tggttgacac cggttccatg gtgtccacca      1380
     ttactgagag ttgtttcatg actaattttg ggctgtgggg tcaagaacag cttagatcat      1440
     gtcattggtt acagcttaga gctgcaaatg gtctttcaat tccttatatt ggttatttgg      1500
     aattagatat agagctttgt gggcgagtag tttcaggctg tggcgtgctg gttgttaagg      1560
     atcctcctgg gggcatgtgt gcacaaacac ctggtgtatt gggtatgaat gtgttgagcc      1620
     gctgctacca ggagctattc ggccagcatg gtacaggcct ttttgattta ccggcagtat      1680
     cacaggcccc tagttttatc tttcaggcct tacaaaattg tcatcaggct ggagttcagc      1740
     cagttaaaga tgcagaagga caagtcagag tgcgtggacg tcgggcgtgt cgcatcccag      1800
     gtggcactgt aaaatttgtt gctacaactt gttcggtgca gtattctggt aatgctgtac      1860
     tgtttgaacc tccaatttct ggtctccctg caggtttgct ggcctctcct gcgctcctaa      1920
     aggtggatgg tggtacggtc tatgtgccca tagtcaacgt gggcactatg gatgtggtat      1980
     tgtacgccag aactattgtg ggcgttgtga gtaaggttga tgtagttgcg ttacccccag      2040
     aggtcgcaga ggtaaacatg gtggccgcta gggtaagtgc acagtcttct ccttctgtgc      2100
     aggagcaaat agccacttta gacctgtcaa aactgcctga ggtagagcag ggtaaagtta      2160
     gggcattgct gttgaagtat ttgcctgtgt tttccagtta cgatggtgat ttgggttgta      2220
     caaacctgat atctcacgat ataccattgt tagatgagat ccctgtcagg cagcggttca      2280
     ggcgcatccc tccgtctgag tatgaggtgg taaaggcaca tatcaaccaa ctgctagaga      2340
     cccaggtgat tagagaaagt tccagtcctt atgcttcgcc cattgtcctg gttaagaaaa      2400
     aagacggtgg tctgcgcatg tgcgtagact accgtcgttt gaatgcgaaa accagaaagg      2460
     atgcattccc tctaccacgt attgaggaaa ctttggactc gctggctggg gcctgttggt      2520
     tttccaccat ggacctagcc agtgggtata accaggtgcc tgtaactgag aaggacaagc      2580
     ctaagactgc cttctgtacc ccttttggcc tttttgagtg gaataggatg gcgtttggac      2640
     tgtgtaatgc cccaagcacc ttccaacgat tgatggaacg gttgtttggg gatcaacagt      2700
     gccaatccct cctcctgtat ttggatgata ttattgtctt ttcctcctct atagatgaac      2760
     atctggcacg gatggaggtt gtcctgagcc gtctgcagag ggaagggttg aaggccaagt      2820
     tatccaagtg tgctttcttt caaagggaag tgcgttattt gggtcacgtc atttcgtcag      2880
     agggggtctc taccgatcca ggtaaagtgg aggcagtggc caactggcct tgcccgacca      2940
     gcgttaccga gttgcgctca tttttggggt ttgctagcta ctaccgtcgt tttgtggagg      3000
     ggttttccaa attggctgcc cctctccata ggctggtggc tcagcttgca aacccaaaac      3060
     agcgaaaggg caatgcccat gactttgcgg cttcttggtc cacagaatgt caaagtagct      3120
     ttgaggggtt gaaaattaag ctaactagtg ctccagtgtt ggcctatgct gatttttctc      3180
     tgccttttat tttagagatc gatgccagtc agggaggctt gggggcagtc ctctcacagg      3240
     aacaacaagg caaggtgcga ccaatagcat atggcagccg cagtcttagg cccaccgagc      3300
     gtaatccatc taattatagt tcaatgaaat tggagttttt ggcactcaag tggtccatga      3360
     ctgaaaagtt cagggagtat ttgttaggcc aaaaatgtat tgtctttact gataacaacc      3420
     cccttagcta cctgaattct gccaagttag gtgtaatgga gcatcgttgg gctgctcact      3480
     tgtccgcatt tgactttgaa ataaagtata gatcgggtag gagcaatcgt aacgcagaca      3540
     ctttgtcccg gcagaacttt tccagtacag gagaagttca aggcctgtgt ccaggggtgg      3600
     ctgttccagc tgtgttgcag caagtggccc cagatggatt ggtgacccag gtcaatcaag      3660
     ttactgcctt tccctgcccc tctggcagtg acatgggtgc tctgcaggaa gcagacacag      3720
     tcattggtga ggtgttggtg ttttggaggc gtaagttgct ccctacctcg gaggagcgta      3780
     agcagctctc tcgcttggca gtcatcttgc ttcgccaatg gggccgcctt gtggaaattg      3840
     aaggggtgct ctatcggcgt gtgtcacggc cggatggcgg agaggaagtt ctccaggtgt      3900
     tactactagc cgtcatgaag actgaggtct tgacccagct gcatcagcag catggacatc      3960
     agggggttga gcgtacttcc cagctggttc gtcagagatg ttactggccg ggtatgtttg      4020
     ctgacattgc acgctggtgc caggagtgtg agcgctgcca gtgtgctaaa ggcaccccct      4080
     ctgctcccag tagttttatg ggacatcttc tggcttctcg gcctaacgag attttagctc      4140
     tcgatttcac tttgatggag ccttcaagat ctggcctaga aaatgtgttg gtcatgactg      4200
     acatatttac aaagtacacc ttagctatac ccactagaga ccaacgggcc gagactgtag      4260
     cccaggtcct tgtggccgaa tggttttgta aatttggggt gccaggtcgc atccactccg      4320
     accaaggtcg taattttgag tccactttga ttcagcagct gtgtgggttg tatggagttg      4380
     taaagtcccg tactactcca taccaccctg ctggaaatgg tcaatgtgag cgtttcaata      4440
     gaacgttgca tgatctgctg cgttctcttc caccttctaa aaagagtgat tggccacttt      4500
     gtctccctca ggttctcttt gcgtacaaca ctactcctca ccagtcaact ggagaatccc      4560
     cgtattattt gatgtttgga caggaaccta aacttcccat tgatttcctc ttgggtagag      4620
     ttaaagagcc gtcagccggc agtgttcatg ggtggattgt ggaacagcaa gatcggttac      4680
     aagtcgcttt tgaaggtgct cgtgagcgat tgggtgccgc agccgaccgg cggaaggccc      4740
     ggcatgatct tcaggtaagg gaagcaccac tgaaggaggg tcaactagtt taccttcgcg      4800
     atcatagtgt gcgaggtaga tgtaaaatcc aagacctgtg gagctcagtg gtctaccaag      4860
     tcctaaaagc acctactgaa agtggagtgg tctatactat tgctcctgtt gcagacctca      4920
     gtaaaaccaa acatgtacac agatccttgt tgaaggccca gcttggtccg aatctgcttc      4980
     ctagtccacc tgaacctgca atgggtgatg gcatgcagcc ttcagatgag gagtgtgatg      5040
     gagacttgct ggttctagtt cctgagacac cagagcttag aggaaggtca aggtcacagg      5100
     gttctgtccc ccctgttcct cgggtggtag acgaggaact ggagggtcga gcaactgggg      5160
     agactgtgca gcctgaagtg gtgccctcta accctgtaag agcagcagaa gttgtggtaa      5220
     ggagaactgt gagaagtacg gcgggtcagc attctaacct gcaccacctc ccacgagctg      5280
     taggtacagg gacagtgtcc agtatagcga ctaacccttt tggtacattc tttcgccctt      5340
     gggattaggc tcttcgatta atgatgttta gttcaccgtc ggggcgacgt tgcagaaatt      5400
     gggggtggaa                                                             5410
//
ID   I-1_DR      repbase;    DNA;    ZEB; 5283 BP.
XX
AC   AL672145;
XX
DT   11-JUL-2002 (Rel. 7.06, Created)
DT   11-JUL-2002 (Rel. 7.06, Last updated, Version 1)
XX
DE   I-1_DR is a non-LTR retrotransposon from the I clade.
XX
KW   Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; endonuclease; RNaseH; I clade; I-1_DR.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-5283
RA   Kapitonov V.V., Jurka J.;
RT   "I-1_DR, a first example of vertebrate non-LTR retrotransposons
RT   that belong belong to the I clade.";
RL   Repbase Reports 2(6), 18-18 (2002).
XX
DR   Genbank; AL672145; Positions   25824   31106.
XX
CC   I-1_DR is a non-LTR retrotransposon that belongs to the I clade.
CC   This element is characterized by 13-bp target site duplications.
CC   It can be an active element. It encodes two proteins:
CC   417-aa I-1_DR1p (positions 3-1253) and 1250-aa I-1_DR2p
CC   (positions
CC   1238-4987). These proteins are most close to corresponding
CC   proteins
CC   encoded by other I-like elements. I-1_DR1p is a putative RNA/DNA
CC   binding protein (it includes zinc-finger), and I-1_DR2p is
CC   composed
CC   of the AP endonuclease (aa positions 9-222), reverse
CC   transcriptase
CC   (positions 500-730) and RNaseH (positions 968-1095) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..1253
FT                 /product="I-1_DR1p"
FT                 /translation="MAASSGGGAVQAVGNDWIENGQEWGDGNDGSGNEVEE
FT                 MEGSESCEPWTNCRGKKRKKRKNKLDSDEEMRSKVKEGNEEYNVFVRLVQE
FT                 GATFEDWSPIQLTKALYKEIGEVRCAKKLRNGCLLVSCKDEAQQKKAIKVN
FT                 KINGKKVKCSEVYDRKLIRGVITGIPVSESLNNVIEGITNAKIKEAKRLKT
FT                 RWNGAICDSLSIMLTFDETKLPDKVFIGYMSYEVKMYIPPPVRCYKCQKYG
FT                 HIAAICKGKMRCSKCSGEHEYGQCDKEAKLKCCNCGGEHSSAYRGCEVNKR
FT                 MQEIQRIKVTQGISYAEATKKVRPTREQMGQMPTMREERKDMIKCKKCDKI
FT                 KEETLIVDKNEFVLFMAEVINCSAQTTSRTERIKIIVKAAEKYMGIKGIPW
FT                 ESVRNTLNEEVQQQQSQAWGGVA"
FT   CDS           1238..4987
FT                 /product="I-1_DR2p"
FT                 /translation="MGWSCIMVIFILQWNARSLISNGQEFKKYIDDLNEKP
FT                 DIVCVQESWLISRLEFNIKGYNAVRMDRKIGKGGGIITFIKKGIQYREVKR
FT                 GNELEYVIVEVWSSEGNIKIINFYNPCRLLEREQLEEIWEGINGKIIWCGD
FT                 FNAHSTLWGNRNDNNGRVIEEFIEEEELVCINDGTGTRLNTARGTESAIDI
FT                 TIVTKDIADRCEWEVLRGNTVGSDHYPIKTQVGIECAKEIEVREEKWILER
FT                 ADWDKFREISEDLLQKIEDNLDVENMCKRISGGIIEAAKMAIPKSKPKIIN
FT                 KIVPWWTKECRKAIKERNKAFKKMKTTHNFQNLMKYKQAQAIVRKTVKKSK
FT                 KEYWRQFCESIGRTTPVERVWGMIKKMKGNGKEYGYPMLMDGQRVIINNKE
FT                 KAEIIARTLIKVHSTDNLSQEEKRGRVETYERYQFDLGKDDGDQVLNINFS
FT                 GTELSRALKKLGKTAPGRDGICYTMLENLTDKGKEVLLKLYNKIWEVGVIP
FT                 KEWKKAVIIPIKKPGKDPKQPTSYRPIALTSHIGKTMERMINDRLVYWVET
FT                 KRKIGNYQSGFRKGRGTMDPILRLEDDIKKAQVNRESVIAVFLDIEKAYDM
FT                 LWRDGVLIKLNQIGVKGRILRWVKEFLSERSITVKINGTFSECYSVENGTP
FT                 QGSIISPFLFSIMFDGIFKEIENNTGVALFADDGAIWKRGRNITFIMKKMQ
FT                 QILNTVQEWTVKWGFRISQEKTKAMLFTKKKIREDLKLKLGGKDLENVESF
FT                 KYLGVWFDRRLTWNTHISKMVDKCKRVLNVMRCLCGVDWGASRVALKSIYT
FT                 GLIRSVIDYGCMVYGSAANTTLKQLDVIQNQALRVCCGAMKTTPVAALQVE
FT                 MGEMPLHLRRDQLEVVYWANLKGHNENHIAQTVLMQCQEREKRGIKGYGWT
FT                 IQQKINDMEIDTIKISPTIVFPVVPTWLLDDLEVDFEIMKEKQENEIDSKQ
FT                 VENYIREKYSETTEIYTDASRIGQRVGVSFSIPKLKIEVTKRINNNLAVYT
FT                 AELVAIWLALKWVEDNKPIKAVIASDSSSALISIKNVVSESRQDIIYEIVQ
FT                 LGNNIIKSGVIISLLWVPAHIGVSGNEMADKLAKQAAQQTMIDMDIKYSKS
FT                 EIKSIVKTKILGKWQHIWNNGSTGRQYYTIQNIVGKGRETRKNKKEEDKFS
FT                 RMRFNHTSLNSTLHMINKHADGMCECNNQETVEHVLMHCPIYQTERNILFT
FT                 QLQEKQVEPNIKNILKLSTGDVCFRYVYNYLKDTGLINRI"
XX
SQ   Sequence 5283 BP; 2143 A; 603 C; 1253 G; 1284 T; 0 other;
     gaatggcggc atcaagtgga ggaggagcag tgcaggcggt tggcaacgac tggattgaga        60
     atggtcagga gtggggagac ggaaatgacg gatcaggaaa tgaagtagag gagatggagg       120
     gtagcgagag ttgcgaaccg tggacaaact gtagaggtaa aaagcggaaa aaaagaaaaa       180
     acaaactaga tagtgacgaa gaaatgagat ccaaagtaaa ggaaggaaat gaagagtata       240
     atgtgtttgt tagactagta caggaagggg cgacatttga ggattggagt cctatacaac       300
     taacgaaagc tctgtataag gagattgggg aggtaagatg tgctaaaaaa ttaaggaatg       360
     gatgcttatt ggtgtcatgt aaagatgagg ctcaacaaaa gaaagcaatc aaagtaaata       420
     aaataaatgg taaaaaagtg aaatgctctg aggtctatga cagaaaactt ataagaggag       480
     taatcacagg cataccggta agtgagtcat taaacaacgt gattgaagga ataacgaatg       540
     ctaaaataaa agaagctaaa cgcttaaaaa caagatggaa cggagccata tgtgacagtc       600
     tttcaataat gctgacattt gatgaaacaa aactacctga caaagtcttc ataggataca       660
     tgagctatga agtgaaaatg tacataccac cgcctgttag gtgttacaaa tgccaaaaat       720
     atggtcatat tgcagcgatc tgtaaaggga aaatgagatg tagcaaatgt agtggagaac       780
     atgagtatgg acaatgtgat aaggaagcaa aactcaaatg ttgcaactgt ggtggagaac       840
     atagttcagc atacagaggg tgtgaggtaa ataaaagaat gcaagagata cagagaataa       900
     aagtcactca aggtatatct tatgcagaag caacaaagaa agttaggcct acaagggaac       960
     agatgggtca gatgccgaca atgagagaag aaaggaaaga catgattaag tgtaaaaaat      1020
     gtgataaaat aaaggaagaa acactgattg tggataaaaa tgaatttgtt ctctttatgg      1080
     cagaggtgat aaattgctca gcacagacaa caagtcggac ggaaaggatt aaaataatag      1140
     ttaaagccgc ggaaaaatac atgggtatta aaggaatccc ttgggaatca gtgagaaaca      1200
     cgttaaatga agaagttcag caacaacagt cacaagcatg gggtggagtt gcataatggt      1260
     aatatttata ctgcagtgga atgcgaggag tttaatatct aatggtcagg aatttaagaa      1320
     atatatagat gatttaaatg aaaaacctga tatagtgtgt gtacaagaat catggttaat      1380
     atcaagacta gaatttaata ttaaaggcta taatgcagta agaatggata ggaaaatagg      1440
     taaaggtggg ggaattatta catttataaa aaaaggtatc caatatagag aagtaaagag      1500
     agggaatgaa ctagaatatg ttattgtgga ggtatggtca agtgaaggta atattaaaat      1560
     aataaatttt tataacccat gtagattgtt agagagggaa cagttagaag agatatggga      1620
     gggtattaat ggaaaaatta tctggtgtgg agattttaat gcacacagta cattatgggg      1680
     taacagaaat gataataatg ggagagtaat tgaagaattt attgaagaag aagagctagt      1740
     gtgcattaat gacgggacag gaactagatt gaatacagca agaggcacag aatcagcaat      1800
     agatattaca atagttacaa aagatattgc agataggtgt gaatgggagg tattaagagg      1860
     taacacagtt ggaagtgacc actacccaat caaaactcaa gtaggaatag aatgcgcaaa      1920
     agaaattgaa gtgagagagg agaaatggat tttagaaaga gcagattggg ataaatttag      1980
     ggaaatcagt gaagatttgt tgcaaaagat tgaggataac ttagatgttg aaaatatgtg      2040
     taaaagaatt agtgggggaa taattgaggc agcaaaaatg gcaataccta aatcaaaacc      2100
     taaaataatt aataaaattg ttccatggtg gacaaaggag tgtagaaaag ctataaagga      2160
     gagaaacaaa gcttttaaaa aaatgaaaac gacacacaac tttcaaaatc tcatgaaata      2220
     caaacaagca caggcaatag ttaggaaaac ggttaaaaaa tcaaaaaaag aatattggag      2280
     acaattttgt gagtcaattg gtagaacaac gccagtagag agagtatggg gaatgatcaa      2340
     aaaaatgaaa ggaaatggaa aagaatatgg atatccaatg ctgatggatg ggcagagggt      2400
     tattattaat aataaagaga aagcagaaat tatagcaaga acattaatta aagtacacag      2460
     cacagacaat ttaagccaag aggaaaaaag agggagggtg gagacttatg aaagatatca      2520
     gtttgattta gggaaagatg acggggatca ggtactaaat ataaatttct cagggactga      2580
     gctgagtagg gcattaaaga aattagggaa aacggctcca gggagagatg gaatttgtta      2640
     tactatgtta gaaaacctaa ctgataaagg aaaggaggtg ctgttgaagt tgtataacaa      2700
     gatatgggag gtaggagtta ttccaaaaga atggaaaaaa gcagttatca ttcccattaa      2760
     aaagcctggg aaagatccca aacagccaac cagttataga ccaatagccc taacatcgca      2820
     tattggaaaa acgatggaaa gaatgattaa tgacagatta gtgtactggg ttgaaactaa      2880
     aagaaagata ggaaattatc aaagtggatt taggaaaggt agagggacaa tggatccaat      2940
     attgaggctt gaagatgata ttaaaaaagc acaggttaac agggaatcag taatagcggt      3000
     gtttttagac atagagaaag catatgacat gttgtggaga gatggagtgt taattaaact      3060
     taaccaaata ggagttaaag gacgcatatt gagatgggtt aaagaatttt tatcagaaag      3120
     atccataaca gttaaaataa atggtacatt tagtgaatgt tacagtgttg aaaatggcac      3180
     accacaaggg agtattatta gccctttttt gttttctata atgtttgatg ggatctttaa      3240
     ggagatagaa aataatacag gagttgcatt atttgctgat gatggtgcga tttggaaaag      3300
     agggagaaac ataacattta taatgaagaa aatgcaacag atattaaata cagtgcagga      3360
     atggacagtt aagtggggat ttagaatatc tcaagaaaaa actaaagcca tgttatttac      3420
     caaaaagaaa ataagagagg atttaaaatt gaaattggga ggtaaagatt tggagaatgt      3480
     tgaatctttt aaatatctgg gagtgtggtt tgataggaga cttacatgga acacacatat      3540
     tagtaaaatg gtggataaat gtaaaagagt gttaaatgta atgaggtgcc tatgtggtgt      3600
     agactggggt gctagtagag tggcattaaa atcaatttat acagggttga taagatcagt      3660
     gatcgattat ggatgtatgg tgtatggatc agctgctaat acaacattaa aacagctaga      3720
     tgtaatccaa aaccaagcat taagagtatg ctgtggagcc atgaaaacca caccggtagc      3780
     agcattacag gttgaaatgg gagagatgcc tctacacctt aggagagatc agctggaggt      3840
     agtatactgg gcgaacttga aaggccataa tgaaaatcac atagcacaga cagttctgat      3900
     gcaatgccaa gaacgagaga aacggggcat taaagggtat ggatggacaa tacaacaaaa      3960
     aataaatgat atggaaatag atacaataaa aatttcgccc actatagtat ttccagtagt      4020
     tcccacatgg ctgcttgatg acttggaagt tgattttgaa ataatgaaag aaaaacaaga      4080
     aaatgagatt gacagcaaac aagtggaaaa ttatataaga gaaaaataca gtgaaacaac      4140
     tgaaatatac acagatgcat caagaattgg acaaagggta ggagtgtcat tcagtattcc      4200
     aaagttaaaa attgaagtta caaaaagaat taataataat ttagcagttt atacagcaga      4260
     attggtagcg atatggttgg ctctaaagtg ggtagaggac aataaaccaa ttaaagcagt      4320
     cattgcgtct gattcaagtt cagcactcat aagtattaaa aatgtagtat cagaatcacg      4380
     gcaggacata atatatgaaa tagtacagtt gggaaataat atcattaaat caggagttat      4440
     catttcatta ttgtgggtac cagcgcacat aggggttagt ggaaatgaga tggcagacaa      4500
     gttggctaaa caagcagcac agcaaactat gatagacatg gacatcaaat acagcaagtc      4560
     agaaatcaaa agtatagtta aaaccaaaat attaggaaaa tggcaacata tatggaataa      4620
     tgggagtaca ggacgtcaat attacaccat acagaacata gttgggaaag gtagggaaac      4680
     aaggaaaaac aaaaaggaag aagacaagtt ctcaagaatg agatttaatc acacatcact      4740
     caatagcaca ctacatatga tcaacaaaca tgcagatggg atgtgtgaat gtaacaacca      4800
     ggaaactgta gaacatgtat taatgcactg cccaatatat cagacagaaa gaaatatatt      4860
     attcacacag ttacaggaaa aacaagtgga acctaacata aagaacatac taaagttgag      4920
     cacgggtgat gtatgtttta gatatgttta taactatttg aaagacacag ggttgattaa      4980
     tagaatttag tatttagatg aaaagttatc tatatcatat agaggtatta tagagaaaga      5040
     aatatcaaag tttgggacat ttagtaattt atttatatgt ataggaaaaa gaaataaaaa      5100
     tttgatttta aatttttttt ttttgggttt tttttttttt tttgtgattt ttatggttgg      5160
     gctttgttta actataaaac atggtttagt taactccgga tccacactcc aatccagatg      5220
     gtggcggtaa tgcaccaaaa gctggttgcc aaccgccata aaacacacaa gaagaagaag      5280
     aag                                                                    5283
//
ID   Polinton-1N1_DR repbase;    DNA;    ZEB; 15469 BP.
XX
AC   .
XX
DT   15-MAR-2006 (Rel. 11.02, Created)
DT   15-MAR-2006 (Rel. 11.02, Last updated, Version 1)
XX
DE   A family of nonautonomous Polinton DNA transposons - a consensus
DE   sequence.
XX
KW   Polinton; DNA transposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; Polinton-1_DR; Polinton-1N1_DR.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-15469
RA   Kapitonov V.V., Jurka J.;
RT   "Self-synthesizing DNA transposons in eukaryotes.";
RL   Proc. Natl. Acad. Sci. USA 103(12), 4540-4545 (2006).
XX
CC   [1] (Consensus)
XX
CC   This nonautonomous transposon is characterized by ~7.3-kb-bp
CC   terminal inverted repeats and 6-bp target site duplications. The
CC   consensus sequence was built based on multiple alignment of
CC   several copies that are >90% identical to each other. This
CC   nonautonomous family was derived from the autonomous
CC   Polinton-1_DR.
XX
SQ   Sequence 15469 BP; 5466 A; 2295 C; 2295 G; 5413 T; 0 other;
     agagagaatt atgatggagc acctgtcaaa aagtttgatg gattgtagcc ccgcccccta        60
     aggcgggact tccggtctaa gccccgcccc ttttatataa actttatagt tccggtaatt       120
     agattcttat cggtttaata taaaataata gttccggtaa ttagattttt atcggtttaa       180
     tataaaataa taattccggt aattagattt ttatcagact aattaaatta taattccggt       240
     aattagattt ttatcagact aattaaatta ataggctatt tccaggtaat gaaaatattg       300
     gtaattaaat tctaatcaaa cagaaataaa attattatta taataataac ggtaattaaa       360
     ttactgttat tagaaccatt attttatatt tttagttatt tgactaaata ttatattaca       420
     atatattata ttatattaag ttatataaaa ttaatatttt attaaataaa attatgtatt       480
     gtattataat atattatatt aagttatatt aaatcattat tttattaact tatattgtaa       540
     ttataccata ttatataata ttattatatt atattattat tataatattt atattagata       600
     ttaaattaaa ttatattata ttatatatca ttattattct attctattct attctattat       660
     attatattat attatattat attatattat attataatta ataaactatt aacataaaca       720
     tttctttatg ttcataccga tgtttcctct gtgtctcagt ctgggcctga gcgtgtgagt       780
     gagtgatgat aaggaaaact ttggataaca tcccgtcaac tgcttgtgaa agatagattt       840
     atatcagatg tagaatatgt atatctgatt gtatgtgttg ggtgtctccc actaactact       900
     atatgttgtt aggtgattag aaagtgtgct gatatctata tatccacatg cagtcaactg       960
     tatgcatatg tatgtgtttg tgtgtgcgta cgtgcgtgcg tgcgtgcatg tgtgcgcgct      1020
     tgagcgaact tgggtctggc tttgtatgct tgaatccaac gacacagtat ttactaaaaa      1080
     tactcattaa taggttatgt tgtttttcac attattacta caataataca tattttaaga      1140
     cacacaaaca ttttgatgta tctttgtcgg agtattaaat taaaatatgt ttacaatatt      1200
     ttttgtcgcc ttagcccctt tttaattcct gggtggacac agcggaatga accgccaact      1260
     taaccagcaa ggttttgcgc agcgtatgcc cttccacccg caacccatct ctgggaaaat      1320
     gtttacaata ttaatccagt aaataacaca tcttaatctt tattgacaat aaattgtcac      1380
     accttttaaa acaacgttat ctaaaatgta atattctaaa atgttgaaaa acacagatgt      1440
     aaattcaagt tgtctttata attaatgaaa acttttatta tgaaaaacaa tttaaaatga      1500
     aagtttttcc tttgactaac atgttttcaa tttatttaca tgcatgtcct gtaatttatg      1560
     gcacacattg taatacagtt aatccaaagc ctaatgtttt gagcactggt catcactggt      1620
     gttggtttaa aaaatcaaca taaaatattt actaaaaagg acttatcact ctttagacat      1680
     tattgttttt tctgtttcaa aagataaata aaatgtaatt ttattacaat aaattgtagt      1740
     aattgcatta ctagacaact tagttactga attttaaatt caaactgttt ttaattcatt      1800
     gcaaatactt gatcatataa agagaaatat gttaattata ctgaataatg gaataacact      1860
     gatatttatt ttaagaagaa aattggctct cagtttatct aaaaacagta cagctccagc      1920
     ccttagttaa atctacttaa tgttttatag taaaattttc tagtttaact actgaatcca      1980
     ctatgtacat gttcatacaa tagtgtcaaa tctagtaagt ttacaaattt gtcaaaatta      2040
     gtcaagttta aaagtagttc ttgaaagtag actgattact tttttacagg gtaaatgatg      2100
     cttttcttct accaatagat ttaatcaaga ttattgtcac tacacacaat ttgttgggag      2160
     tgtatatgtt tctttaaaca atgtttttta ttggcaaaca cattttcaaa tgatcaaact      2220
     aaaatctaac ggaatgtttt tcactctgaa tataaaagct ttatctgtgc atttcacttg      2280
     gaaaagtgat gtttaaaata ctattcatta aacttactgc atgactggag ttttattttt      2340
     tacaaaccaa tagcattgac ctaattcatg cttttgattt tccactctgt agcagttttt      2400
     caacacaaaa tgtaaacgtt ttatgcatgt gctaaaaatc tgtaattttg caccactgtc      2460
     agagtttgta tgtaacaaag catacatgtt tttaaaactg tcagttttca aaagttactt      2520
     aacgttgtct cctttcttct ggagttttta ggaacaacaa tgtttcattt gtgggggaaa      2580
     gaaaaaaaaa gtgatgtttt gaaatacatt ggttacacca atatggtgta aaggttagaa      2640
     gttggggttt catccagacg gccggggctc aacgcctgat tttttaatgc tttttaacct      2700
     ctaaagtgtc ccaagtaaca ttaataacaa cacttagcca caattatttg tatcgcagtt      2760
     gaaggctaca cttaatactg ccagcaaaac acaataataa caaagagtaa acactttctt      2820
     attttaagaa tactttgcag taaactttaa tgcattagta agtttatttt atccaccttc      2880
     tgatgcagaa tgtttttgaa acatttaatt atgtttttat gaccacgggc atctcaccaa      2940
     aatatttgac ctaattcaag taaccagtgc tgcagttttt aatcacaaaa tgtctttaca      3000
     aacttttttg cgtatgtgtt aaaagtctaa ttttacacaa ctcttatagc gtccgttaca      3060
     atgcatacag taaatgtcac aataaccatt tctactgcca attatctttt ggtgtctaat      3120
     tcttcacaat attttttcac gagaactatg aatctacaaa ggcaaggcaa ggcaagacaa      3180
     ggcaagttta tttctatagc acatttcata cacagtggta attcaaagtg ctttacataa      3240
     acaggaataa aagagacaac tataagaaaa ataaaaacaa ataatgaaaa atttaaaaaa      3300
     atgataaaaa cagatcaaat gtgttaaaac aagttataaa agaatgaaaa gaagagaaaa      3360
     acatattagt gtgatctgtc aatagtgcga tctgtctaca aaactaaaag aatagttgcc      3420
     actaaatctg cattaatatc ttgttcaaca gtgtctaatg tactgtgtat taaaactgta      3480
     ttcttttgaa ctgtcatgaa agtttgcgtt gtgaatgttt tggttttaaa ccagagacaa      3540
     ccaacaatat tatgtatacc ttttgttcaa atactttttc aaatgaaaga taaattatga      3600
     aattgtatgt cagtgcatct ttaaaactaa attgggcaaa aaaaaattag gttgtctttc      3660
     taaactgact acaaaaccgt tatacatgag aactgtgtgt tattgggttg acttaaacgt      3720
     taaccaattt taataaatgt tctacagttt atacatttgc tttaaacaag tgaccagtcc      3780
     ttgacacact atgcaacatt ctaattttct aaatatttaa atatacattt ggcataaata      3840
     cagggcttta atcagttttg acaatgtttc tatgatttgt ttcacaccat catgttttgc      3900
     acctagctca atttttaact tttttacagg aaaggcatag acacttgagt tgataaactt      3960
     ttatttcaag taaatataca ctgaaataga gtagtacata acaaacaaac atggattgca      4020
     ttaccataat aaagacaaat taactaagaa aaaaaaaata catttataca gtcatacatt      4080
     gaagaaaaaa cagggtacac cagaacaata aagacattac tgaatattac caaacaacaa      4140
     agaaatgctg ctaaaagcat tctgtcatgt cctagtatgt ggctagtcat aacttccaca      4200
     atctcagcaa tatttgttat tttgttttgt gaaaccagtg acacacaaat atctgttata      4260
     tatgtggaca tacatagaac ctgcgttacc ccccatctca tcactcaatt cagtcagcac      4320
     ctccagaatt tttgtattgg ttgcacagac agcaccattg ttatgaaaac acaggtgtgt      4380
     caaatgattt atcgtatcgg cccatgagtt taggtccctc tcacaacgtc catttctctc      4440
     ttgagatttt tcacacgttt gccatctcct gtacaatcat gtttagaatc acacgcatca      4500
     ttaatgatct tctccagaag aaaaaccata tggtccctat aatgctgttt aaacatgttg      4560
     tccacaatag accttatttg acaatcaaaa acagggttgc actcgtactc gggcctttca      4620
     tgcgcattat cgtcagtatt ttgagaacaa tagcaaccaa ccatctttgc atggtggctg      4680
     tcagaaaaaa atctgaaaat atttttaaga aaacgttttt tctttaatca caatacaaag      4740
     tttgacccat aatctgtgta gatcatataa agtagtacct taaagatgcg gcctgtgtcc      4800
     ttaaacagcg atagttcagc cctaatagtt cagtgcaaac aagaccaaag taggggctgt      4860
     ggtcctcaaa gatagtacct ttttatgtct ttaatcttct ttttactcct gatcaattgg      4920
     ttcttgtaga aagctttagg atcagtgact gtagccagaa gcattactcc ttggtagcta      4980
     gaagtaaaaa tgggtgcttt atctacacat tcaaacaggc ccgccctcac tcacggggag      5040
     gtactatgaa catctgctat ggtgtcataa aactcatgat agttgacatc ttgtctttta      5100
     tttaagacat aggcgtgatg atgtagggat acctatttta aaaataaaaa taaagataca      5160
     gagtcatacc gtaaatatat tcacaatgaa agattttaga gaactaatat tatagatttt      5220
     ttacatttca tggaagtttt aggttgacaa aatataatgc acagctgaag tcatctcaaa      5280
     actcattgcc aaaatggaca atacaattaa tttgaatgtt tttaagcaaa tatgtacagt      5340
     cttttcaaca ttattctgca gtttgaattg ttcaatacaa ttgtttattt ggtttcctat      5400
     ttgggctcaa agcagtcaca tatttaactg aaatttgcat ctttcatgat agtgttcttt      5460
     ttcaaagaat gattgagaag aaataggatt acatctacac ttgcatattc tttttagaat      5520
     ttaagtgaac tatacttgta agaaaataca attaaattta tgaaataacc catattccat      5580
     aacttattac aatgcctttg aggtcaagaa agagatcaag tttaggagcc attacctcat      5640
     aattggttat tagataaaag ttattttaaa aagtcaagtt tggttaaaaa cctaggcttt      5700
     cttaaatttg ttctgttaaa acataaagaa aattttaaaa atcaagttat gcattatacg      5760
     ttctggagat atataaacat acactttacc atcagataat ctacgaataa caatattcac      5820
     caattttata caaagggtac caaaaccgtt tgcttatgtt tgttgcagag tagcaataag      5880
     attttttttt tttttttttt tttttatgtt atgtgatact aaatctattt tctggcctat      5940
     aattttagtg atatacttat tataaagttg aaataaaaag ctgatacatt tagttaaaca      6000
     tcatgtgctt gacattttgg taaatagtta aagcttctga ttgtactaat tgaatattta      6060
     gcattttgaa aggtaaatat gtgtcagggt atgtaaagct gacacctcta acttgtttgg      6120
     ttgagatttg tggaatgttt ccacaaattg aaatattaaa gtgtttttct tattcactat      6180
     tcagcaactt cgatgcaaca ttgtaaaagt gttagaaata tacaaaagta catgtcatgc      6240
     tgttttgtaa aaacagacag tcatatcagt aaagaactgc acttcctgag acaaacattt      6300
     tgttttgctg taaatcttta atattttaat gtatcgggca ggatgtaagc atacaactta      6360
     catataactg actttttgta cgacaatctt tcgatgaaca tgtttacagt atattgcaac      6420
     attttagagt ggtctttgaa atagttacaa tatcacagat gtaaagtact cgaacaatgt      6480
     ttgaacaatg ttagctgatt gctgtactta agtactactt ttatgatttg taccctactt      6540
     gagtacagtt aaaattaatg tttactttta cttcattact tttttaaaaa cagtattttt      6600
     tttcacaact ttcaatttta tttattctca aaaaaagttc ctcactccta acaaaacgac      6660
     aaagctgctt aaattaatgt tatttactat gtaattgaca ttcatttcaa tattccatca      6720
     aactggtcag acatgctctt cgattgttta gaagtcatgt cctgtcacat tgagctctac      6780
     aatacacatc aaccccagta agtctgctat cagtacactt ctgttaagca gttcataaga      6840
     aaatatacat tcagtccatt gtctgtgtac acattcacat aattttattt agatgccgca      6900
     cagaaataaa tttaaacctc acttaagtat atttaaactt atacaaacag aaagtgttta      6960
     gttatttgtc ctacagtatg cttggtcatt gtttttcgcg tacaatttta ttacagtacg      7020
     tgttctaagt acatttggtt agtagttatt ttgacaccct ttgattaatt gggcacatta      7080
     tttttctaca taatgttata gacacatgta ttaagacaga gaataaatta gtttgagtcg      7140
     acttaactga aatgaactgc gaacatgtca aatctttata aaagacggta atcttataat      7200
     aacacaaatt taactgctta ctgcagtgag aaaaatatta aaatgaaatc acaaaaacat      7260
     aaaaagtata catgcagcta gacaaaagac ctgaatactg tcaatattta catgtttact      7320
     gaattctttt cagtatagag tatactgtaa aagtataatt tcaggtgtga cagcagtaaa      7380
     cattaagcac ataagtagct aactataaca tttttattta tacatcctgt caacttatga      7440
     gaatagtagt agttcactta tacttgtagt agataaatag tttgtgctgg aaatgatgca      7500
     atgaaatgat gcatttatgt ctgcacttaa accatccata tgagaactgt cggtgctgca      7560
     tgctcaatgc ttcaacattt tcaccacagg tctgactttc caaccaattt agcgttataa      7620
     tttttagtga tacagtgtcc atattactct agtgtcttga aacttgcaag agtacagcta      7680
     gtgtggcctt ggttaactag tagtacacaa agcagttacc acaagggata gtgtgttatt      7740
     gaaaacatgt catgcaattt gtagaaacca atttagaaaa caactgaagt aaccgctgag      7800
     cattttatct cagaataagt gcagtgttag attacctgtg gattttgaaa atgtttataa      7860
     tttaataaaa attataaaca ttattaaaaa attataaaaa taattgtaat aaaaataaca      7920
     aaagcttcaa acattattca aacatgtaat gaacttacac agtcatatgg tcaaagtata      7980
     cttgttgcta atcaaatata gcacataaaa atacattaaa tacccaagag aatatgctgt      8040
     agtacaaatt atgtacaatt caaatatacc aaatttaata tttaaaaata tggcatttca      8100
     agatagcaaa taattaatta cattgaatta tacaggctct ttgtctagct gcatgtatac      8160
     tttttatgtt tttgtgattt cattttaata tttttctcac tgcagtaagc agttaaattt      8220
     gtgttattat aagattaccg tcttttataa agatttgaca tgttcgcagt tcatttcagt      8280
     taagtcgact caaactaatt tattctctgt cttaatacat gtgtctataa cattatgtag      8340
     aaaaataatg tgcccaatta atcaaagggt gtcaaaataa ctactaacca aatgtactta      8400
     gaacacgtac tgtaataaaa ttgtacgcga aaaacaatga ccaagcatac tgtaggacaa      8460
     ataactaaac actttctgtt tgtataagtt taaatatact taagtgaggt ttaaatttat      8520
     ttctgtgcgg catctaaata aaattatgtg aatgtgtaca cagacaatgg actgaatgta      8580
     tattttctta tgaactgctt aacagaagtg tactgatagc agacttactg gggttgatgt      8640
     gtattgtaga gctcaatgtg acaggacatg acttctaaac aatcgaagag catgtctgac      8700
     cagtttgatg gaatattgaa atgaatgtca attacatagt aaataacatt aatttaagca      8760
     gctttgtcgt tttgttagga gtgaggaact ttttttgaga ataaataaaa ttgaaagttg      8820
     tgaaaaaaaa atactgtttt taaaaaagta atgaagtaaa agtaaacatt aattttaact      8880
     gtactcaagt agggtacaaa tcataaaagt agtacttaag tacagcaatc agctaacatt      8940
     gttcaaacat tgttcgagta ctttacatct gtgatattgt aactatttca aagaccactc      9000
     taaaaatgtt gcaatatact gtaaacatgt tcatcgaaag attgtcgtac aaaaagtcag      9060
     ttatatgtaa gttgtatgct tacatcctgc ccgatacatt aaaatattaa agatttacag      9120
     caaaacaaaa tgtttgtctc aggaagtgca gttctttact gatatgactg tctgttttta      9180
     caaaacagca tgacatgtac ttttgtatat ttctaacact tttacaatgt tgcatcgaag      9240
     ttgctgaata gtgaataaga aaaacacttt aatatttcaa tttgtggaaa cattccacaa      9300
     atctcaacca aacaagttag aggtgtcagc tttacatacc ctgacacata tttacctttc      9360
     aaaatgctaa atattcaatt agtacaatca gaagctttaa ctatttacca aaatgtcaag      9420
     cacatgatgt ttaactaaat gtatcagctt tttatttcaa ctttataata agtatatcac      9480
     taaaattata ggccagaaaa tagatttagt atcacataac ataaaaaaaa aaaaaaaaaa      9540
     aaaatcttat tgctactctg caacaaacat aagcaaacgg ttttggtacc ctttgtataa      9600
     aattggtgaa tattgttatt cgtagattat ctgatggtaa agtgtatgtt tatatatctc      9660
     cagaacgtat aatgcataac ttgattttta aaattttctt tatgttttaa cagaacaaat      9720
     ttaagaaagc ctaggttttt aaccaaactt gactttttaa aataactttt atctaataac      9780
     caattatgag gtaatggctc ctaaacttga tctctttctt gacctcaaag gcattgtaat      9840
     aagttatgga atatgggtta tttcataaat ttaattgtat tttcttacaa gtatagttca      9900
     cttaaattct aaaaagaata tgcaagtgta gatgtaatcc tatttcttct caatcattct      9960
     ttgaaaaaga acactatcat gaaagatgca aatttcagtt aaatatgtga ctgctttgag     10020
     cccaaatagg aaaccaaata aacaattgta ttgaacaatt caaactgcag aataatgttg     10080
     aaaagactgt acatatttgc ttaaaaacat tcaaattaat tgtattgtcc attttggcaa     10140
     tgagttttga gatgacttca gctgtgcatt atattttgtc aacctaaaac ttccatgaaa     10200
     tgtaaaaaat ctataatatt agttctctaa aatctttcat tgtgaatata tttacggtat     10260
     gactctgtat ctttattttt atttttaaaa taggtatccc tacatcatca cgcctatgtc     10320
     ttaaataaaa gacaagatgt caactatcat gagttttatg acaccatagc agatgttcat     10380
     agtacctccc cgtgagtgag ggcgggcctg tttgaatgtg tagataaagc acccattttt     10440
     acttctagct accaaggagt aatgcttctg gctacagtca ctgatcctaa agctttctac     10500
     aagaaccaat tgatcaggag taaaaagaag attaaagaca taaaaaggta ctatctttga     10560
     ggaccacagc ccctactttg gtcttgtttg cactgaacta ttagggctga actatcgctg     10620
     tttaaggaca caggccgcat ctttaaggta ctactttata tgatctacac agattatggg     10680
     tcaaactttg tattgtgatt aaagaaaaaa cgttttctta aaaatatttt cagatttttt     10740
     tctgacagcc accatgcaaa gatggttggt tgctattgtt ctcaaaatac tgacgataat     10800
     gcgcatgaaa ggcccgagta cgagtgcaac cctgtttttg attgtcaaat aaggtctatt     10860
     gtggacaaca tgtttaaaca gcattatagg gaccatatgg tttttcttct ggagaagatc     10920
     attaatgatg cgtgtgattc taaacatgat tgtacaggag atggcaaacg tgtgaaaaat     10980
     ctcaagagag aaatggacgt tgtgagaggg acctaaactc atgggccgat acgataaatc     11040
     atttgacaca cctgtgtttt cataacaatg gtgctgtctg tgcaaccaat acaaaaattc     11100
     tggaggtgct gactgaattg agtgatgaga tggggggtaa cgcaggttct atgtatgtcc     11160
     acatatataa cagatatttg tgtgtcactg gtttcacaaa acaaaataac aaatattgct     11220
     gagattgtgg aagttatgac tagccacata ctaggacatg acagaatgct tttagcagca     11280
     tttctttgtt gtttggtaat attcagtaat gtctttattg ttctggtgta ccctgttttt     11340
     tcttcaatgt atgactgtat aaatgtattt tttttttctt agttaatttg tctttattat     11400
     ggtaatgcaa tccatgtttg tttgttatgt actactctat ttcagtgtat atttacttga     11460
     aataaaagtt tatcaactca agtgtctatg cctttcctgt aaaaaagtta aaaattgagc     11520
     taggtgcaaa acatgatggt gtgaaacaaa tcatagaaac attgtcaaaa ctgattaaag     11580
     ccctgtattt atgccaaatg tatatttaaa tatttagaaa attagaatgt tgcatagtgt     11640
     gtcaaggact ggtcacttgt ttaaagcaaa tgtataaact gtagaacatt tattaaaatt     11700
     ggttaacgtt taagtcaacc caataacaca cagttctcat gtataacggt tttgtagtca     11760
     gtttagaaag acaacctaaa ttttttttgc ccaatttagt tttaaagatg cactgacata     11820
     caatttcata atttatcttt catttgaaaa agtatttgaa caaaaggtat acataatatt     11880
     gttggttgtc tctggtttaa aaccaaaaca ttcacaacgc aaactttcat gacagttcaa     11940
     aagaatacag ttttaataca cagtacatta gacactgttg aacaagatat taatgcagat     12000
     ttagtggcaa ctattctttt agttttgtag acagatcgca ctattgacag atcacactaa     12060
     tatgtttttc tcttcttttc attcttttat aacttgtttt aacacatttg atctgttttt     12120
     atcatttttt tatatttttc attatttgtt tttatttttc ttatagttgt ctcttttatt     12180
     cctgtttatg taaagcactt tgaattacca ctgtgtatga aatgtgctat agaaataaac     12240
     ttgccttgtc ttgccttgcc ttgcctttgt agattcatag ttctcgtgaa aaaaatattg     12300
     tgaagaatta gacaccaaaa gataattggc agtagaaatg gttattgtga catttactgt     12360
     atgcattgta acggacgcta taagagttgt gtaaaattag acttttaaca catacgcaaa     12420
     aaagtttgta aagacatttt gtgattaaaa actgcagcac tggttacttg aattaggtca     12480
     aatattttgg tgagatgccc gtggtcataa aaacataatt aaatgtttca aaaacattct     12540
     gcatcagaag gtggataaaa taaacttact aatgcattaa agtttactgc aaagtattct     12600
     taaaataaga aagtgtttac tctttgttat tattgtgttt tgctggcagt attaagtgta     12660
     gccttcaact gcgatacaaa taattgtggc taagtgttgt tattaatgtt acttgggaca     12720
     ctttagaggt taaaaagcat taaaaaatca ggcgttgagc cctggccgtc tggatgaaac     12780
     cccgaacttc taacctttac accatattgg tgtaaccaat gtatttcaaa acatcacttt     12840
     tttttttctt tcccccacaa atgaaacatt gttgttccta aaaactccag aagaaaggag     12900
     acaacgttaa gtaacttttg aaaactgaca gttttaaaaa catgtatgct ttgttacata     12960
     caaactctga cagtggtgca aaattacaga tttttagcac atgcataaaa cgtttacatt     13020
     ttgtgttgaa aaactgctac agagtggaaa atcaaaagca tgaattaggt caatgctatt     13080
     ggtttgtaaa aaataaaact ccagtcatgc agtaagttta atgaatagta ttttaaacat     13140
     cacttttcca agtgaaatgc acagataaag cttttatatt cagagtgaaa aacattccgt     13200
     tagattttag tttgatcatt tgaaaatgtg tttgccaata aaaaacattg tttaaagaaa     13260
     catatacact cccaacaaat tgtgtgtagt gacaataatc ttgattaaat ctattggtag     13320
     aagaaaagca tcatttaccc tgtaaaaaag taatcagtct actttcaaga actactttta     13380
     aacttgacta attttgacaa atttgtaaac ttactagatt tgacactatt gtatgaacat     13440
     gtacatagtg gattcagtag ttaaactaga aaattttact ataaaacatt aagtagattt     13500
     aactaagggc tggagctgta ctgtttttag ataaactgag agccaatttt cttcttaaaa     13560
     taaatatcag tgttattcca ttattcagta taattaacat atttctcttt atatgatcaa     13620
     gtatttgcaa tgaattaaaa acagtttgaa tttaaaattc agtaactaag ttgtctagta     13680
     atgcaattac tacaatttat tgtaataaaa ttacatttta tttatctttt gaaacagaaa     13740
     aaacaataat gtctaaagag tgataagtcc tttttagtaa atattttatg ttgatttttt     13800
     aaaccaacac cagtgatgac cagtgctcaa aacattaggc tttggattaa ctgtattaca     13860
     atgtgtgcca taaattacag gacatgcatg taaataaatt gaaaacatgt tagtcaaagg     13920
     aaaaactttc attttaaatt gtttttcata ataaaagttt tcattaatta taaagacaac     13980
     ttgaatttac atctgtgttt ttcaacattt tagaatatta cattttagat aacgttgttt     14040
     taaaaggtgt gacaatttat tgtcaataaa gattaagatg tgttatttac tggattaata     14100
     ttgtaaacat tttcccagag atgggttgcg ggtggaaggg catacgctgc gcaaaacctt     14160
     gctggttaag ttggcggttc attccgctgt gtccacccag gaattaaaaa ggggctaagg     14220
     cgacaaaaaa tattgtaaac atattttaat ttaatactcc gacaaagata catcaaaatg     14280
     tttgtgtgtc ttaaaatatg tattattgta gtaataatgt gaaaaacaac ataacctatt     14340
     aatgagtatt tttagtaaat actgtgtcgt tggattcaag catacaaagc cagacccaag     14400
     ttcgctcaag cgcgcacaca tgcacgcacg cacgcacgca cgcacgtacg cacacacaaa     14460
     cacatacata tgcatacagt tgactgcatg tggatatata gatatcagca cactttctaa     14520
     tcacctaaca acatatagta gttagtggga gacacccaac acatacaatc agatatacat     14580
     attctacatc tgatataaat ctatctttca caagcagttg acgggatgtt atccaaagtt     14640
     ttccttatca tcactcactc acacgctcag gcccagactg agacacagag gaaacatcgg     14700
     tatgaacata aagaaatgtt tatgttaata gtttattaat tataatataa tataatataa     14760
     tataatataa tataatataa tataatataa tataatataa tataatataa tagaatagaa     14820
     tagaataata atgatatata atataatata atttaattta atatctaata taaatattat     14880
     aataataata taatataata atattatata atatggtata attacaatat aagttaataa     14940
     aataatgatt taatataact taatataata tattataata caatacataa ttttatttaa     15000
     taaaatatta attttatata acttaatata atataatata ttgtaatata ataatataat     15060
     ttagtcaaat aactaaaaat ataaaataat ggttctaata acagtaattt aattaccgtt     15120
     attattataa taataatttt atttctgttt gattagaatt taattaccaa tattttcatt     15180
     acctggaaat agcctattaa tttaattaga ctgataaaaa tctaattacc ggaattatta     15240
     ttttatatta aaccgataaa aatctaatta ccggaattat tattttatat taaaccgata     15300
     agaatctaat taccggaact attattttat attaaaccga taagaatcta attaccggaa     15360
     ctataaagtt tatataaaag gggcggggct tagaccggaa gtcccgcctt agggggcggg     15420
     gctacaatcc atcaaacttt ttgacaggtg ctccatcata attctctct                 15469
//
ID   Gypsy-24-I_DR repbase;    DNA;    ZEB; 4529 BP.
XX
AC   .
XX
DT   11-FEB-2005 (Rel. 10.01, Created)
DT   11-FEB-2005 (Rel. 10.01, Last updated, Version 1)
XX
DE   An internal portion of the Gypsy-24_DR LTR retrotransposon - a
DE   consensus sequence.
XX
KW   GYPSY superfamily; Gypsy-24-I_DR; Gypsy-24-LTR_DR; Gypsy-24_DR;
KW   LTR retrotransposon; endogenous retrovirus; gag; integrase;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-4529
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-24_DR, a family of LTR retrotransposons from zebrafish.";
RL   Repbase Reports 5(1), 21-21 (2005).
XX
CC   [1] (Consensus)
XX
CC   Gypsy-24-I_DR is an internal portion of the Gypsy-24_DR LTR
CC   retrotransposon that belongs to the Gypsy superfamily. Its
CC   long terminal repeat is deposited in Repbase as
CC   Gypsy-24-LTR_DR. Gypsy-24_DR is characterized by 4-bp target
CC   site duplications. The internal portion encodes one
CC   polyprotein: the 1464-aa Gypsy-24_DR1p (pos. 114-4505)
CC   composed of the gag, protease, reverse transcriptase, and
CC   integrase domains. The consensus sequence was built from
CC   several copies less than 4% diverged from each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy-24_DR1p"
FT                 /translation="MEDRAASVDYSDEAFTHLRDPVANLIDTFSELYLDSE
FT                 EEKESKDESPQQGQEDISKIDDFPSPPPPLDFHDDQLQFENDEHDQRIHSI
FT                 EKHLADLEHRVSSFVTAETLNANLRACEDRINYYVQRELDRVQQKCYAKVE
FT                 DLSRSIVDCLKRRDKQLEQQFKAIKPIMSTPMHSSIVTSHKTSQTPSRIDA
FT                 TQDTTKQGTYLSPSSFPTSIKLELPTFGNADSEDPLDFIERFEEYDELRPL
FT                 HHEEMLAALSVSLKGTAKSWWKAEKSSITDWLSFKEKFLFSFLNEDHKEVA
FT                 AQKLADYKQKVNESIRDYAFNYRAMSLKINPAMSESELVQATLRNCNPRLA
FT                 SLLRGTVKSIDDLVRLGTQIEKDWSESRKRWSQGKEEDQKKKSSAVKGQPN
FT                 RLMLIDPCLCDNVLQAPVILNHSYFNAVIDTGSTFSLLQKKLWERLKKKDE
FT                 QLTRSDQTFMLANGQSQKTLGKVLWACEIYGVKHEVTFHVMDDDSLAVPVI
FT                 LGLDFLKKAKVTIDFNVSRIYLPDANSSHPVCFNKTTEHAAVKFYAAQEEV
FT                 GVSHDERLKLIDQALENSHTTTKVKSQLKALMCDWPSVCTNKLGRTDLIKH
FT                 VIKTTDDLPLRKRPYRVSKAKNDFIEEQIQELLQQKIIKPSTSPWASPVVV
FT                 VEKKDGGSRLCIDYRGLNAKTFLDAYPMPQITDILDSLQGAKVFSTLDLKS
FT                 GYWQLEMDPASMEKTAFVTASGLYEFSSLPFGLKNAAASFQRLMEQVLRDL
FT                 KNKCCMVYIDDIIVYSPDVQTHLNHLEQVFHSLHKAGLTLNLKKCKFICAS
FT                 LDYLGHTISADGVNVNSDKVEAIRTFPIPKTLKELQRFLGLAAWYHRFIPD
FT                 FSSKTAPLHLLKRKDVKWNWSDECQRAFDVIKDELTRAPVLCTPNFDLSFK
FT                 VQTDASDVGLGAVLTQEVEGQERVIAYASRLLRGAEKSYSASEKECLAVVW
FT                 AVEKWHHYLEGRPFEVITDHASLVWLFQHPKPSSRLERWTIRLQGYHFTVR
FT                 YRKGQCNIVPDVLSRREEVNSQAVLLHTPAKKNFSTVSCDLPLDLSQIACE
FT                 QEKDTECQEIMVKAKSQRTTDLKRTHYICKNGVLFRSIPDSKEGQRLQVVI
FT                 PEKLREVTLSYAHDSPLSGHLGRFKTLMRLLEFAYWPSIRTDVWEHCKICE
FT                 KCQRYKPTNLKPAGDLQSVPIVEPGYMLGMDIMGPFPRSSRQNEYLLVIVD
FT                 YFTKWVEVFPMRTAKSNTIVRILIEEIFTRWGTPAFIVSDRGRQFTSNLLD
FT                 QLCKQWQITPKLTTAYHPQSNLTERVNRNLKTMIAMFVEQNHRTWDQWIYE
FT                 FRFALNTAWHESTGYSPAEIALGRQLKGPLQRALHNPPDPNQPAYNTLERQ
FT                 KILYDVVRDNVEKAQSKQRKYYNMKRRTQNFEEGDLVWVRTHPLSKADDAF
FT                 MAKISPKWKGPARIVKKLGPVNYKVTMLSDVAQVDTYHTQNLKIWHGADF"
XX
SQ   Sequence 4529 BP; 1467 A; 856 C; 984 G; 1222 T; 0 other;
     gatggcaccc gaacagggac attcgtgaat tgtattttac gaagtccttt gaattataaa        60
     gagatatttc actgatactg aaattcttca caagcaaata ttacaaattt acaatggagg       120
     acagagcagc tagtgtggat tattcagatg aagcctttac tcatctcaga gatcctgtag       180
     ctaatcttat agatactttt agtgaattgt atctagattc agaagaagaa aaagaaagta       240
     aagatgaatc tccacagcag ggacaggaag acattagtaa aattgatgac tttccatcac       300
     cacccccacc ccttgacttt catgatgatc aattacagtt tgagaatgat gaacatgatc       360
     agcgtataca tagcattgaa aagcacttgg ctgatcttga gcatagagta agcagttttg       420
     tcaccgctga gacactgaat gcaaatttaa gagcatgtga agataggatt aactactatg       480
     tacagaggga gttagatcgt gttcagcaaa aatgctatgc taaagttgag gatttgagta       540
     ggagtattgt ggattgcttg aagcgtagag acaaacagct agagcaacaa tttaaggcta       600
     tcaaaccgat catgtccact cctatgcatt ccagcatagt tacttctcac aaaacatctc       660
     aaacaccctc tagaattgat gcaactcaag acaccacaaa gcaaggcact tacctttctc       720
     catcgtcctt cccaaccagt attaaacttg aactgcctac ttttggaaat gcagattcag       780
     aagaccccct tgatttcatt gagcggtttg aagaatatga tgaacttcga cctctacatc       840
     atgaagagat gttagcagct ttatctgtaa gtcttaaagg tacagctaag agttggtgga       900
     aggctgagaa gagcagtatt acagattggt tgtcattcaa agaaaaattc cttttttcat       960
     tcttgaatga agatcacaag gaagtggctg ctcagaaatt ggctgattac aaacaaaaag      1020
     tcaatgaaag tataagagac tatgctttta actatagagc aatgtcactg aaaataaacc      1080
     ctgcaatgtc tgaatctgaa ttggtacaag caacattgag aaactgtaat cctagattgg      1140
     cttcattatt aagaggaaca gtgaaaagta ttgatgatct ggttcgtctc ggtacacaaa      1200
     tagagaaaga ttggtcagaa agtaggaaaa gatggagtca aggaaaggaa gaggatcaaa      1260
     agaagaaatc ttcagcggtg aaaggacaac caaataggct catgcttatt gacccttgtt      1320
     tgtgtgataa tgtactacag gctcctgtta tcttgaatca ctcatacttc aatgctgtaa      1380
     ttgatacagg aagtacattt tctttgctgc agaagaagtt gtgggagaga ttgaagaaaa      1440
     aagatgagca attgactaga agtgatcaaa cgttcatgct cgcaaatgga cagagtcaga      1500
     aaactctagg taaagtatta tgggcatgtg aaatttatgg agtgaagcat gaagtcacct      1560
     ttcatgtgat ggatgatgac agtttggctg ttcctgttat attaggcttg gattttctca      1620
     aaaaggctaa ggtaaccatc gactttaatg tttcacgtat ctacctacct gatgctaaca      1680
     gtagtcaccc tgtatgtttt aacaaaacaa ctgagcatgc tgctgtgaag ttttatgctg      1740
     cacaggaaga agttggagta agccacgatg agaggttaaa actgattgac caagccttgg      1800
     aaaattctca cactacgacc aaggtaaaga gtcaattaaa agctcttatg tgtgattggc      1860
     catcagtatg tactaacaaa ctgggccgta cagaccttat caagcatgtg atcaagacca      1920
     ctgatgactt gcctttaaga aagagaccat atagagtttc taaagccaag aatgatttta      1980
     ttgaagaaca gatacaggag ttgcttcaac aaaaaatcat caaaccttct acatctcctt      2040
     gggcttcacc tgtggtagtg gtagagaaaa aggatggggg atctagatta tgcattgact      2100
     accgagggct taatgcaaaa acttttctag atgcttatcc tatgcctcaa atcacagata      2160
     tactggactc tcttcaagga gctaaggtgt tcagcacgtt ggacttaaag agtggatact      2220
     ggcagttaga aatggatcct gcaagtatgg aaaaaacagc ttttgtcact gcttcggggc      2280
     tatatgaatt ctcgtctctt ccctttggcc ttaaaaatgc agctgcgtct ttccaacggc      2340
     tgatggaaca ggtactgaga gatcttaaaa acaaatgttg tatggtttat atcgatgaca      2400
     ttattgtata ctcacccgat gtccaaactc acctgaatca tcttgaacaa gtgtttcaca      2460
     gcctacacaa agctggtctc acacttaacc taaagaaatg taagttcatt tgtgcttcac      2520
     ttgactactt gggccatacc atctcagcag atggagtcaa tgtgaattca gacaaagtgg      2580
     aggctatcag aacatttcca attcccaaga ccttaaagga attacaaaga tttttaggac      2640
     tggcagcttg gtaccatcga tttattcctg atttctcctc caaaacagct cccttacacc      2700
     tcttgaagag gaaagatgtg aagtggaatt ggtctgatga gtgtcaacgt gcctttgatg      2760
     ttatcaaaga tgagctcact agagcacctg tgttgtgtac acctaacttt gacctttcct      2820
     tcaaggtaca gactgacgca agtgatgtgg gtttaggggc tgtgctcact caagaagtgg      2880
     aaggacaaga gagagttatt gcctatgcat ctcggttgct cagaggggct gagaagtcct      2940
     attccgcctc agagaaagag tgtctggcag tagtgtgggc agtagagaag tggcatcatt      3000
     accttgaagg tagaccgttt gaggtaatca ctgatcatgc ttccttagtc tggcttttcc      3060
     aacatcctaa accttcatct agattggaaa gatggacaat cagactacaa ggataccatt      3120
     ttactgtaag ataccgaaaa ggtcagtgta acatagtgcc cgatgtgttg tccaggagag      3180
     aggaagtgaa ctcacaggct gtattactgc atacaccagc caaaaagaat tttagtactg      3240
     tctcatgtga tctgcctttg gacttatcac aaattgcttg tgaacaggaa aaggataccg      3300
     aatgccaaga gatcatggtt aaagccaaaa gccagagaac cacagatctg aagaggactc      3360
     attatatttg caagaatgga gtcttattca ggagcattcc agattcaaag gaaggccaaa      3420
     gactacaggt tgtaatccct gagaaattga gagaggtaac tttgtcttat gcgcatgaca      3480
     gtcctttaag cggtcatttg ggtaggttca aaactcttat gcgactgcta gaatttgcat      3540
     attggccatc catacgtact gatgtttggg aacattgcaa aatttgtgag aaatgtcagc      3600
     ggtacaaacc tacaaaccta aaacctgctg gtgacctaca aagtgtgccc atagttgaac      3660
     ctgggtatat gctgggtatg gacatcatgg ggccgtttcc acggagctca cgccaaaatg      3720
     agtatctact agttatagtg gactatttca ctaagtgggt agaggttttt ccaatgagaa      3780
     ctgccaagtc taacactatt gtacggattc tcatagaaga aatattcact agatggggaa      3840
     ccccagcctt catcgtatcc gaccgaggta ggcagtttac ctccaacctg ttggatcagt      3900
     tatgtaaaca gtggcaaata actccaaaac tcaccaccgc ctatcatcct caatcaaatc      3960
     ttacagaaag agtcaatcga aatttgaaaa ccatgattgc catgtttgtt gaacaaaacc      4020
     accgtacctg ggatcagtgg atatacgagt tcagatttgc tctgaatact gcttggcatg      4080
     aaagtactgg ttattcacct gctgagatag cacttggacg acagttgaag ggacccctac      4140
     agagagcctt gcacaatccc ccagatccta accaaccagc atataatacc ctagaacgcc      4200
     aaaaaattct atatgatgta gtcagagaca atgtagagaa ggcacagagt aagcagagga      4260
     agtattacaa tatgaagaga agaactcaga attttgagga gggagatttg gtatgggtaa      4320
     gaactcaccc tctctctaaa gctgatgatg cattcatggc taaaatttct cctaaatgga      4380
     aaggcccagc taggattgtg aaaaagctag gaccggtaaa ttacaaggtc actatgttat      4440
     cagatgttgc gcaagtagat acttatcata cacaaaactt aaaaatttgg catggtgcag      4500
     atttttaaaa aaacacgggg agggatgta                                        4529
//
ID   Gypsy13-I_DR repbase;    DNA;    ZEB; 6488 BP.
XX
AC   .
XX
DT   07-JAN-2005 (Rel. 10, Created)
DT   07-JAN-2005 (Rel. 10, Last updated, Version 1)
XX
DE   An internal portions of the Gypsy13_DR LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   GYPSY superfamily; Gypsy13-I_DR; Gypsy13-LTR_DR; Gypsy13_DR;
KW   endogenous retrovirus; gag; integrase; reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-6488
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy13_DR, an LTR retrotransposon from zebrafish.";
RL   Repbase Reports 4(12), 319-319 (2004).
XX
CC   [1] (Consensus)
XX
CC   Gypsy13-I_DR is an internal portion of the Gypsy13_DR
CC   LTR retrotransposon that belongs to the Gypsy superfamily.
CC   Its long terminal repeat is deposited in Repbase
CC   as Gypsy13-LTR_DR. Gypsy13_DR is characterized by 4-bp target
CC   site duplications. The internal portion encodes two proteins:
CC   the 556-aa gag Gypsy13_DR1p (pos. 95-1755) and 1577-aa
CC   polyprotein (pos. 1756-6486, conceptual translation) composed
CC   of the protease, reverse transcriptase, and integrase domains.
CC   PBS is identical to that in Gypsy9_DR. Some internal portions
CC   are flanked by 100% identical LTRs. PBS is complementary
CC   Arg-tRNA.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy13-I_DR1p"
FT                 /translation="MDIIEAEGIKIPNSVIISGLTQDKSDDELFDFLKQYG
FT                 SFAKTVFISDKDSEFYQSVILEYTSGQALHSLEPQLPYTHQLSSDPSVTYH
FT                 VRALSSVFTQYKGTSVTKSYLEGLKEVAKLSGTDFEIVLSQMLSQMTAELT
FT                 PTSADTEADDEDLDEPQAQVCPEESFTPAPVKISQPDDSLSQHTSAKPNKP
FT                 PLLTSSEVLNPPEVQKLVIEHVVRTGEVATQGLMQQRLRVFSGKCPRPGSE
FT                 VDYDTWRSSVELMLKDSTLSDLNVSRKIVDSLLPPAADVIKHLSSEAPSSA
FT                 YLQLLDSAFGVVEDGDELLAKFMNTLQDAGEKPSTYLYRLQTALRVTIKRG
FT                 GVSPEEADRHLLKQFCRGCWDNDLITDLQLERRRNNPPSFGQLLLMLRTEE
FT                 DKHTAKVTRMKQHLGSSKPRAVMHSQRTWVSSEVEQGEVSNMVSLAAETKE
FT                 IKRQIAKLQSQLASLVPAHKTQKKASQQAVVNKQDKKKSDTANQLTRTPVS
FT                 QRQKDRPRPWYCFTCGEDCHIASSCTSEPNPTLVNAKRKLLREKQLLWDSQ
FT                 NANSNPDLN"
FT   CDS           0..0
FT                 /product="Gypsy13-I_DR2p"
FT                 /translation="FKLESVLVVGQTGAELESQCPNTNHVFEKSQVSKVQS
FT                 TSLPKGLIGAMSIAEVTIANEKCSCLLDTGSQVTTVPKSFYEQHLSGYPIK
FT                 SIDDILEVEGANGLSVPYEGYIEMGITFPEELLGVSVEIPTVALVVPDVKA
FT                 HNQSMVLIGTNTLDVLYKKYLSADPPKFQPCSYGYKVVLKTLEIRWRQNTS
FT                 GVLGHVRLRSRAPKVLMAGQTVVVGGSVSNPCRIDQTILVEHSPDSSLPGG
FT                 VFVKRCLLNQPENQMNSIPVVLTNETNHNITIPPRCVIAELHAVDSLQSLS
FT                 KTSNSNGEGDFTLNFGDSPLPQVWKERISKKLREIPEVFSHHDLDFGHTQK
FT                 VKHSIKLHDETPFKQRARPIHPQDIEAVRRHLQDLLASGVIRESESPFSSP
FT                 IVVVRKKNGDVRLCIDYRKLNIQTVRDAYALPNLEETFSALTGSKWFSVLD
FT                 LKSGYYQIEVDEADKPKTAFVCPLGFWEFNRMPQGVTNAPSTFQRLMEKCM
FT                 GDINLKEVLVFLDDLIVFSDTLEEHETRLLNVLFRLKEYGLKLSLEKCKFF
FT                 QTSVRYLGHIVSEHGVETDPEKVQALKTWPVPKNLKELRSFLGFGGYYRRF
FT                 IKDYSKIVKPLNDLTSGYPPLRKGAKKCNKGSQYHNPKESFGDRWTPSCEE
FT                 AFRTLIEKLTSAPILGFADPKLPYFLHTDASTKGLGAALYQEQDGQMRAIA
FT                 FASRGLSHSESRYPAHKLEFLALKWAVTEKFNDYLYGNHFTVITDSNPLTY
FT                 ILTTAKLDATSYRWLSALSTFSFKLQYRAGKQNVDADSLSRRPQEPIPETA
FT                 WSSKEQERIHQFVQHHHHDAADIVSAPNDVVHAICEKHLINQDAASGVALV
FT                 GSLALRPDAIPDEYGEDCNLDGLPVMPYLPHEIGEKQRADSVLREVIFHLE
FT                 LGEKPSPTVRKEIPTFPLFLKEWNRLELRDGILYRRRQENNLLTYQLVLPE
FT                 ELRPLVMSSLHDDMGHLGIERTVDLIRSRFYWPKMAADVERKVKECSRCVR
FT                 RKAQPQKAAPLVNFHATRPLQLVCMDFLSLEPDRSNTKDILVITDFFTKYA
FT                 VAYPTPNQKAKTVAKCLWENFVTHYGFPERLHSDQGPDFESHVIRELCEVS
FT                 GIKKSRTTPYHPQGNPVERFNRTLLGMLGTLEEKDKAHWKDFVKPLVHAYN
FT                 CTKHEVTGFTPYELMFGRQPRLPVDLAFGLPHHGKSDVIPHSEYVKQLKSH
FT                 LKESYLLASQGMLKTAEKNKTRFDKSVTHSSLEVGDRVLVRNVRLRGKHKL
FT                 ADKWESEVYVVVKKAGDLPVYTVHPENSESPLRTLHRDLLLPCGYLPLSNS
FT                 SNPSPPKMSRPRTRQNPGFQQPEEDCSFLSPEDEDYEWYGDNHQNVEPLQF
FT                 STVYDVPQPVKGKSVSLADESAGQNLGKDGTQCKEGTQNDNLPVTPPVDNL
FT                 PDDLPANDPPVYNAPVHSSVDNPSDDVLEVCETTETPGKDQPETDNSKDLP
FT                 TQRESKVEEANDSENSVSCEREEQQSEQEIPSLRRSARERDKPERLTYFQL
FT                 GNPLSHVVQSLFQGLSTALVNSLNSVEDLGDSPITSDIPANIVTTQPLRAC
FT                 KGTCIVSRGEA"
XX
SQ   Sequence 6488 BP; 1949 A; 1372 C; 1449 G; 1718 T; 0 other;
     aagtggcgag ccagccagga ggtggcgctg ttgctgagta ttaattacat tctaagccat        60
     tatttttgcc tacgttgacc agtaacaatt gacaatggat ataatagagg cagaagggat       120
     taaaattccg aactcagtga tcattagcgg attaacacaa gacaaaagtg atgatgagct       180
     gtttgatttc ctaaaacaat atggttcttt tgccaaaaca gtttttatta gtgacaagga       240
     ttctgagttt tatcaaagtg ttatacttga atataccagt ggccaagctt tgcattctct       300
     agagccacag ctaccttata ctcaccagct atcaagtgac ccaagtgtta cttaccatgt       360
     gagagcatta tctagtgtgt ttacacagta taagggaacc agtgtcacaa agtcatacct       420
     ggagggactg aaagaagtag caaaattgag tgggactgat tttgagattg tcttgagcca       480
     gatgctgtca caaatgactg ctgagcttac tccaacgtcc gctgacacag aggctgatga       540
     cgaggatctg gatgaaccgc aagctcaggt atgtcctgaa gagagtttta ccccagcccc       600
     tgtcaaaatt agtcaaccag atgactcact gtcacagcat acctctgcta aaccaaataa       660
     gccccccctc ttaacctctt cagaggtgtt aaatccacct gaggttcaaa aactcgtaat       720
     tgaacatgtg gtgagaactg gtgaagtggc tactcaagga cttatgcagc aaaggcttag       780
     ggtattttca ggaaaatgtc ccagacccgg aagtgaggtc gattacgaca cttggcgctc       840
     cagtgtagag ctaatgctga aagattccac cttatctgat ttgaacgtat ccaggaaaat       900
     agtagacagt cttttaccac ccgcagcaga tgttataaaa catcttagct ctgaagctcc       960
     atcatcagct taccttcagt tgctggattc tgcttttgga gttgttgagg atggagatga      1020
     actccttgca aagttcatga atactctgca ggacgctggt gaaaagccat ctacttactt      1080
     gtacagattg cagacagctt tgagagtgac aataaaaaga ggtggtgtct cacctgaaga      1140
     agcagatcgg catcttctca agcagttctg tagaggctgc tgggataatg atctaattac      1200
     tgacctgcag ctagagcgaa ggcgtaataa tcctccttca tttgggcagc ttctacttat      1260
     gttacgcact gaagaagaca aacacaccgc aaaagtcact cgtatgaagc agcatcttgg      1320
     gtcttctaaa ccaagagcag taatgcactc gcaaaggacg tgggtttctt ctgaggtgga      1380
     gcaaggagaa gtttcaaaca tggtatcact tgcagctgaa actaaggaga tcaagagaca      1440
     gatagcaaaa ctacaaagtc agttggctag ccttgttcct gcgcataaaa cccagaagaa      1500
     agcttcacag caagcagtag taaataaaca ggacaaaaag aagtcagata ctgctaacca      1560
     gttaactagg actccagtta gccaaagaca aaaggacagg cctagaccat ggtactgctt      1620
     tacctgtggt gaggattgtc atattgcatc ctcttgcact tctgagccaa accccacact      1680
     tgttaatgcc aagcgtaaac ttttgagaga aaaacagcta ctatgggact ctcagaacgc      1740
     caactccaac cctgatttaa actagaatca gtccttgttg tgggacagac aggggctgag      1800
     ttggaatcac aatgtcccaa tactaatcat gtttttgaaa aaagtcaggt ttctaaagtg      1860
     caaagcacta gcttgccaaa ggggttaata ggtgctatga gcattgctga agttactata      1920
     gccaatgaaa aatgcagctg tttattggat acaggctctc aagtgacaac agttccaaag      1980
     tccttctatg aacagcatct ctcaggatac ccaattaagt ccattgatga tatcctggaa      2040
     gtagaaggcg caaatggtct atctgttcca tacgaaggct acatagaaat gggaattacc      2100
     tttccagaag aattactagg agtgagcgtt gaaataccta cagtagcctt agtagttcct      2160
     gatgtaaaag ctcacaatca gtcaatggtt cttattggga caaacacctt ggatgttctc      2220
     tataagaagt atttaagtgc tgatccccca aaatttcaac cttgttcata tggttacaaa      2280
     gtggtactta aaactcttga aataagatgg agacaaaaca caagtggtgt tcttggccat      2340
     gtacgattga ggagtcgagc acccaaagtt ttaatggctg gtcagactgt agtggtggga      2400
     ggttcagttt caaatccatg cagaatagat cagactatac ttgtggagca ctcacctgat      2460
     tcgtctctac ctggaggggt gtttgtcaag cggtgtcttc ttaatcagcc tgagaaccag      2520
     atgaatagta taccagttgt gcttaccaat gagacaaatc ataacattac tatcccaccc      2580
     agatgtgtga tcgctgagct ccatgctgtg gattctttac agtctctttc aaaaacttcc      2640
     aatagtaatg gagagggtga tttcactctg aacttcggtg attccccctt acctcaggta      2700
     tggaaggagc gcatttctaa aaaactcaga gaaatacctg aagtgttcag tcatcatgac      2760
     ctagattttg gccacaccca gaaagtgaag catagcatta aattgcacga tgaaactccc      2820
     tttaaacaga gggcacgacc tattcatcca caagatattg aggcagttcg taggcatcta      2880
     caagatcttc ttgcaagtgg agtcatccgg gaatcagagt cacctttctc ttccccaatt      2940
     gtggtggtga ggaagaagaa tggggatgta cgtctatgta tagattatcg caagctgaat      3000
     attcaaacag tgagagatgc ctatgcattg ccgaatcttg aggaaacatt ctcggctctg      3060
     acaggatcta aatggttctc tgtcctcgat ttaaagtctg ggtactacca gatagaagtg      3120
     gatgaggcag acaaacccaa aaccgccttt gtctgtccgc tgggattttg ggagtttaat      3180
     cgcatgccac agggtgtgac gaatgcccca agtacattcc aaagattaat ggaaaaatgt      3240
     atgggggaca ttaatctgaa ggaggtactt gttttcttgg acgacttaat agttttctca      3300
     gacacattgg aagaacatga gactcgacta ttaaatgtcc tgtttcgtct aaaggaatat      3360
     ggtctgaaac tctccttgga aaaatgtaag tttttccaga cttcagtccg ctatttggga      3420
     catatcgtgt cagagcatgg agtggagact gaccctgaga aggtccaagc tttaaaaacc      3480
     tggcctgtac ctaaaaacct aaaagaactt aggtctttct taggctttgg gggatattat      3540
     cgtcgtttca tcaaggacta ctctaaaata gtgaagccac ttaatgatct gacctcagga      3600
     tatcctccgc taagaaaggg tgccaagaag tgtaacaaag gaagccagta ccataaccca      3660
     aaagagtcct ttggtgatcg atggacgcct tcttgtgaag aagcatttcg aacccttata      3720
     gaaaaactca cttctgcacc tattctggga tttgctgacc ccaaactccc ttattttctc      3780
     cacactgatg caagtacaaa gggactaggg gcagcacttt atcaagaaca ggatgggcag      3840
     atgcgtgcaa tagcattcgc aagcagaggg ttgtctcaca gtgagtctag atatcctgct      3900
     cacaaacttg aattccttgc cctaaaatgg gcagtgactg aaaagtttaa tgactactta      3960
     tacggtaacc atttcaccgt tattacagat agcaaccctt tgacttatat cctcactaca      4020
     gcaaaattgg atgctacaag ttatcgatgg ctgtcagctc tttccacctt ctctttcaaa      4080
     ttgcaataca gagctggcaa gcagaatgta gatgcggata gtctctcaag gagaccccag      4140
     gaacccattc ctgagactgc ttggtccagt aaagagcagg aaagaatcca tcaatttgta      4200
     caacaccatc accatgatgc tgctgacatt gttagtgccc caaatgatgt agttcatgct      4260
     atttgcgaaa agcaccttat caatcaagac gcagcttctg gggttgcact ggtgggatca      4320
     cttgcactcc gtcctgatgc tatacctgat gagtatggag aggattgtaa tttagatgga      4380
     ttacctgtta tgccttacct accacatgag attggtgaaa agcagagagc agactcagtc      4440
     cttcgagaag tcattttcca cttggagttg ggggagaaac cttctcctac agtgcgaaaa      4500
     gagattccaa cttttcctct ttttctaaag gagtggaatc gacttgagtt gcgagatgga      4560
     atactctata gaagaaggca ggaaaataat ttactcactt accaactagt actccctgag      4620
     gagttaagac ccttggtgat gagcagttta catgatgaca tgggtcacct agggattgag      4680
     aggactgtag atctgattcg atctcgtttc tactggccaa aaatggctgc agatgtggaa      4740
     cgaaaagtca aggagtgtag tcgctgtgtg cgtaggaagg cacaacccca aaaagcagct      4800
     cctctggtca attttcatgc cactaggcca ttacagctgg tgtgtatgga tttcctttca      4860
     ttggaacctg acaggagtaa taccaaagac atcttggtta ttacggactt ttttaccaag      4920
     tatgcagtgg cttatcctac acctaatcag aaggctaaaa cagtagcaaa gtgtctttgg      4980
     gagaactttg tcacacacta tgggtttcct gaacgcttgc atagtgacca gggccctgat      5040
     tttgagtcac atgtcatcag agagctctgt gaagtgtcag gcataaagaa aagccgaaca      5100
     actccctatc acccgcaggg aaacccggtt gaacgcttca ataggaccct gctgggcatg      5160
     ttgggtactt tggaggagaa agataaagcc cattggaaag actttgtcaa gccacttgtc      5220
     catgcgtaca attgtacgaa gcatgaagtc actgggttta ctccttatga attgatgttt      5280
     ggcagacagc caagattgcc tgttgacctt gcttttggtc tgcctcatca tgggaaatca      5340
     gatgtcattc ctcattcaga gtatgtgaaa cagctgaaat cacacttgaa ggaaagctat      5400
     ttgcttgctt cacaaggtat gttgaaaact gctgaaaaga acaaaaccag gtttgacaaa      5460
     tctgtcactc attcttcttt ggaggtcggg gatcgtgtcc tggtgcgaaa tgtcagactg      5520
     cgtggtaagc acaagttagc ggacaagtgg gaatctgagg tgtatgtggt ggtaaagaag      5580
     gctggcgact tacctgtcta caccgttcat cctgaaaaca gtgaaagtcc ccttcgtacc      5640
     cttcataggg accttcttct tccttgtggt tacctgccat tgtcaaacag ttcaaacccc      5700
     tccccaccca aaatgtcaag acctagaaca aggcagaatc caggtttcca acaacctgaa      5760
     gaggattgtt ctttccttag tccagaagat gaggattatg agtggtatgg tgataaccat      5820
     caaaatgtgg aaccattgca gttctctaca gtgtatgatg ttccccaacc agtaaaaggg      5880
     aagagtgtgt ccttagctga tgaatcagct ggtcaaaacc tcggaaaaga tggaactcaa      5940
     tgcaaggaag gaactcaaaa tgataaccta cctgtaactc ctccagttga caacttacct      6000
     gatgatcttc cagccaatga tcctccagtt tataatgcac ctgtacactc ttcagttgat      6060
     aacccatctg atgatgttct ggaagtctgt gaaacaactg agacacctgg aaaagaccaa      6120
     cctgaaactg ataacagtaa agacttaccc actcagagag agagtaaagt tgaagaggca      6180
     aatgattcag aaaactctgt ttcttgtgaa agagaagaac aacaatcaga acaagaaata      6240
     ccttcactaa gacgttctgc aagggagaga gacaaacctg agagacttac ctactttcag      6300
     cttggaaatc ctctgtctca tgttgttcag tctctgttcc aaggattaag cactgctctt      6360
     gttaactctc tcaatagtgt tgaagatctg ggtgattctc ctataacttc tgacattcca      6420
     gcaaacatag tgactaccca accgctcaga gcatgcaaag ggacttgcat tgtttcaaga      6480
     ggggaagg                                                               6488
//
ID   L1-4_DR     repbase;    DNA;    ZEB; 5548 BP.
XX
AC   AL807749;
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   L1-4_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   L1 clade; L1-4_DR; Non-LTR retrotransposon; endonuclease;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-5548
RA   Kapitonov V.V., Jurka J.;
RT   "L1-4_DR, a family of non-LTR L1-like retrotransposons from
RT   zebrafish.";
RL   Repbase Reports 2(7), 24-24 (2002).
XX
DR   Genbank; AL807749; Positions  100605   95058.
XX
CC   L1-4_DR is a family of L1-like non-LTR retrotransposon. This
CC   family was active recently (no stop codons in ORF1;
CC   a few stop-codons in ORF2).
CC   It encodes two proteins:
CC   the 459-aa L1-4_DR1p (positions 171-1547) and the 1294-aa
CC   L1-4_DR2p
CC   (positions 1577-5461, a conceptual translation).
CC   These proteins are most close to corresponding
CC   proteins encoded by other L1-like elements. L1-4_DR1p is a
CC   putative
CC   RNA/DNA binding protein, and L1-4_DR2p is composed of the
CC   AP endonuclease (aa positions 1-200) and reverse transcriptase
CC   domains.
CC   KRN*K*KNKSFF*KWMKIRLVSMIVLSRCFIHVCVTLCLKKPKSREFWEKLFENFDTSNIWKNVRSILKS
CC   PALENLDFMLRHNCIMTEIIFKKIGVSQDDLCKVCLEKKEGVLHLFLNCKKLSDFMKMLKTMVCNFLYDE
CC   NIILEEWDVLFGFNGKTKNKFALNYMLTLARYTIWKRRNIMKQKKKEIPLVLLYKQIVTEEIMVIYDYCK
CC   MYEKMDIFEKCIRKNNPYIVQTWTGFKVFLPGDF.
XX
FH   Key           Location/Qualifiers
FT   CDS           171..1547
FT                 /product="L1-4_DR1p"
FT                 /translation="MDTLVKELELKMDYGSMDKATPENNNSRDSNNGIDDN
FT                 DTWATVVARRRKTKSDTSREGSGEMQQTKGKANAEHLENSQQSSHRNEMIN
FT                 KLKSQARFQRQYKKETTLTMTVKDPENITVTMIIKAVEDKTGIGKLFGLRK
FT                 KSNFDYELTMENETDCDHLMDGLMINQQFCEVSKLCATERMVSFLNLPNYI
FT                 QDSEIIQKLVDWGVSPILPLRRRYHPGTTVADGTRFIRVKFPKEVMSLPYN
FT                 VKFDTEEGPKYFRVIHDQQIKTCRLCGSAEHEKKDCPQFVCRECLEQGHFT
FT                 RDCKAPRCQGCKKTILWCRCESDEEETGVMETNKQMEKSSNEEREEEVQEL
FT                 PPDDLNEQEEEQAMSEEDEGDTADTEAQDLMKDDGHDMEEEQGAAGENTES
FT                 RIEEEVSDDDDNEEINIGTKDRTIDSINRRRRKTVQLNIQQVLKKQKLRKE
FT                 AKAKLKTERTDLRF"
XX
SQ   Sequence 5548 BP; 2269 A; 553 C; 1134 G; 1592 T; 0 other;
     tgctttcaag gaagtgtgag gtggcagtag ggagagaaag gctctcccat tttgatttgc        60
     tttattgttt tttttcttga ttttgcttaa attaaattgt attaattttg tttagtttta       120
     gttaaacccc agacagtgtt atctgtttgg ggttaaaacg ttttgaaagg atggacactt       180
     tggtaaagga actggaacta aaaatggact atggcagcat ggacaaagct actcctgaaa       240
     acaacaattc aagagattca aacaacggca tcgacgataa tgacacatgg gcaactgttg       300
     tggcaagaag gaggaaaact aaatcagaca caagtagaga aggaagtgga gaaatgcaac       360
     aaactaaagg taaagcaaat gctgaacact tggaaaacag ccaacaatca agtcatagaa       420
     atgagatgat aaacaaactg aaaagtcaag ctagatttca gcgacaatat aaaaaagaaa       480
     caactctgac aatgactgtg aaagatcctg aaaatatcac tgtaacgatg attataaagg       540
     ctgtggaaga taagactgga attggaaaat tgtttggact gaggaaaaaa tccaattttg       600
     actatgaact tactatggaa aatgaaacgg actgtgatca cttaatggat ggactaatga       660
     ttaaccaaca attttgtgaa gtatcaaaac tctgcgcaac tgagagaatg gtttcttttt       720
     tgaacttacc caactatatt caagatagtg aaatcatcca aaagctggtg gactggggag       780
     tttctccaat tctcccactg agaagaagat atcatccagg aacaactgtg gctgatggaa       840
     caaggtttat cagagtgaaa tttccaaaag aagttatgag tcttccttac aatgtaaagt       900
     ttgatacaga ggaaggacca aaatatttta gagtgataca tgatcagcag ataaaaacat       960
     gcagattatg tggaagtgct gaacatgaaa aaaaagactg cccacaattt gtgtgtagag      1020
     aatgtctgga gcaggggcat tttacgcggg actgtaaagc cccacggtgc caaggctgca      1080
     aaaagacaat attgtggtgc agatgtgaat cggatgagga agagactgga gttatggaaa      1140
     caaataaaca aatggagaaa tcaagcaatg aagaacggga agaggaagta caggaattac      1200
     caccggatga tttgaatgaa caagaagagg agcaggccat gagtgaagag gatgaaggag      1260
     atacagcaga cactgaggca caagatctaa tgaaagacga tggacacgac atggaagaag      1320
     aacaaggagc agcaggtgaa aatacagaaa gcagaattga ggaagaggta agcgatgatg      1380
     atgataatga agaaataaat attgggacta aagacagaac aatagacagc ataaacagaa      1440
     gacgcagaaa aactgtacaa ttaaatattc agcaagtgct taagaaacaa aaattacgaa      1500
     aggaagcaaa agcaaaacta aaaactgaaa gaactgatct aagattttag atcataaaaa      1560
     agactacaaa tgattgatgg attgtttcat ttggattttc ttttgtttgg atggcttgtt      1620
     ttcttttata tttctaatga acaacttatg tttggtttca attaatgtaa gagggctgtc      1680
     atccaaagtg aagtttgaaa atgtaattgc tttaacaaaa aaatgtgatg ttatatgtat      1740
     acaagagact ggatggaatg aaaacattgt taatgattta aaaaaatgtt gggatgggga      1800
     aatattgtat aataatgacc caaataagaa aaaaggcatg gcaatattaa ttagaagggg      1860
     aataggatat acatttgatg ttttatttaa agataattat ggaaggattt taactattaa      1920
     aattatgaat aaggatgaag aaataagaat atgtaatata catgctccaa atgaagactt      1980
     ggaaagagtt acttttttta aagatctaag tgttttaatg agtggatgga ataatgttat      2040
     tgttttagga gattttaata ctgttttaga aagaatagat gtagatgatc atatggtgtt      2100
     tagagcagat gttggaagaa gagaactgaa acacatgatt gaaaaacata aatatgtaga      2160
     tgtatggaga gagagaaata gagccaaaag agaatactca agaaggcagt gggtgaatac      2220
     agttttaaaa caaagcagat tagactatgt tttatgtaca agaaatgtag aatcttttat      2280
     ttcaaatatt ttttacaaga tttttagctg tagtgaccat gattttctgt atgtaatgat      2340
     ggatttcagt ggagttgaaa gaggaccagg tgtatgggtg tttaatacag agcttttaaa      2400
     gaatgatttt tataaaattg aaatggaaaa cattattatt aatagtgtga atgatgagtt      2460
     atatgatgaa gaaataagtg tgtggtggga caatgtaaaa ttagaggcca aaagattttc      2520
     aatagaatgt tcaaagaaaa tgcagaaagc caaaagagct aaagaaagac aattaaacaa      2580
     agaatgggag aatgaaatgg aaaagataac agaaggaaat atggatatta ggagaatagt      2640
     gatattagaa gagaaactga aaaaactaga agaggaaaaa tgtatgggag ctagaataag      2700
     aagcaagata aaaaatacag tggaaggaga aagaagtaca aagttctttt atgatctaga      2760
     aaaaacacga caaaaagcag atttgataaa gaatgtctca acaaaagaga aaactgtcaa      2820
     agataaagaa agtattttaa gaacagttaa agatttctat gaaactttgt ttaaagcaaa      2880
     aggagttcat gaagaagata aggatttttt attgaatcaa ataaaggtta aagtaagcga      2940
     agaggataaa aaactgtgtg atagtgatat aactgaagag gagatcaatg aagctataac      3000
     acaattaagt aatgggaaaa gccctggttt agatggtttg tcatctgaat tttataagac      3060
     ttttaaagat gttttaattc caattttaaa agatcttttt attgctattt ttaaaaaagg      3120
     acagttgagt gagagtatga agaaaggaat gattaaaatt atttataaaa ataaaggtga      3180
     taaagattat ttgcaaaatt atagaccttt aagtatgctt aatacagatt ataaaatatt      3240
     agcaaagatt ttagcaaaca gacttaaaaa ggtagttccc actcttatta ctactaacca      3300
     ggcttatggt gttataggta gagatatagc agacacagta acaagcatca gagatttaat      3360
     ctggtacata aaagaaaaaa aagatgaagg atttttattc agcatagatc tagaaaaggc      3420
     ttttgataga gttgagcata gctatttatt tgacataata cagaaatttg gctttggtga      3480
     gaattttatt aagtggataa aatgtttttt atacagatat ttttagttgt tttaaaataa      3540
     atggattttt aaccgactac atggagattt ctagatctat aagacaagga tgtcctttat      3600
     cagcgttatt atacacatta gttgctgaac cattaggctt agctataaat ggagaaaaga      3660
     aaattaaagg gtttaaaata gaaatcaata gaacagagca gaaaatttac cagtatgctg      3720
     atgataccac tctattttta aaagatttta aaagtgttgg aaaagctatg gaaatatttg      3780
     ataaatattg tcgaggatcg gtagcaaaag taaataaaga aaaaactgaa tatatgaaga      3840
     tgggaaaagt agacgttcaa caaggaaatt gggaatataa agaacaaaaa aaatacataa      3900
     atatcttagg cattacactg ggatatgatg aaaataaaac tagagaaata atttgggatg      3960
     aacttataaa taaaatggaa aaaagattat gtttttggaa acagagagta ttgtttttaa      4020
     aaggaaaagt actggtatta aattctcttt ttctatctaa gatgtggtat gttttaagtg      4080
     ttgttagtct acctacgtgg gtgtataaga aattaaaaac tatgatttta aactttttat      4140
     gggatgataa accatctaaa attgcatata acactatcat tggaaaggtg gatgagggag      4200
     gactaagact tatagatcca tggataagaa taaaaagcat gagaattaaa acattaaaaa      4260
     agtttttaaa tgaagacaat attctatgga aaagcataat gagttatttt attaataaat      4320
     gtggacaaat aagagatgat ttcttatgga tggcatttaa agaccgcatg atagaaaata      4380
     ttcctgagtt ttatgaagag ttgttgagaa catggaaatg cttttataat aatatacaaa      4440
     ctgagattga agggagaaaa ctttatttac agcaacccct atttttaaat cagaacaata      4500
     aaagcaaaaa gcaaatgttt tatgagaact ggtatgcagt gggttttaga caagtaaaag      4560
     acattttata tgaaataaaa cctgggtttt taccgactca agcaataata gatacactgg      4620
     aggaaataga agatgtagat gataaagaaa aaattgaaga tcaatacaag aagttaagat      4680
     tagcattacc agatcactgg atcaaaacta ttgaagagaa tgaaaaaaga aactgaaaat      4740
     agaaaaataa aagttttttt taaaaatgga tgaagataag attagtatca atgattgtcc      4800
     tatcaagatg ttttatacat gtttgtgtaa cactgtgttt aaaaaaacct aaatcaagag      4860
     aattttggga aaagttattt gaaaactttg atacttcaaa tatatggaaa aatgtaagat      4920
     caattttaaa aagtccagca ttggaaaact tagattttat gttaagacac aactgcataa      4980
     tgacagagat tatctttaaa aagattgggg tatcacaaga tgatttgtgt aaagtgtgtt      5040
     tggaaaaaaa ggaaggcgtg ttacacctat ttttaaattg taaaaagttg agtgatttta      5100
     tgaagatgtt gaaaacaatg gtatgcaatt ttctgtatga tgaaaacatt attttagaag      5160
     aatgggatac actgttttat ttggttttaa tgggaaaaca aaaaataagt ttgctcttaa      5220
     ttatatgttg actcttgcaa gatatacaat atggaaaaga agaaatatta tgaaacaaaa      5280
     gaaaaaagaa attccattgg ttttgttgta taaacagatt gtgactgagg aaataatggt      5340
     tatatatgac tattgcaaaa tgtatgaaaa gatggacatt tttgaaaaat gtattagaaa      5400
     aaataatcca tatattgtac aaacttggac tggttttaaa gttttcttac ctggagattt      5460
     ttaaatattt tatcttttaa atatttgtat gtataaatgt catgattgtt gatgatgtat      5520
     tttttaagaa agaaaaaaaa aaaaaaaa                                         5548
//
ID   CR1DR2      repbase;    DNA;    ZEB; 2898 BP.
XX
AC   AL591213;
XX
DT   04-MAR-2002 (Rel. 4, Created)
DT   04-MAR-2002 (Rel. 4, Last updated, Version 1)
XX
DE   CR1 Danio rerio 2.
XX
KW   retrotransposon; non-LTR; CR1; CR1DR2.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-2898
RA   Jekosch K.;
RT   "CR1DR2: CR1-like repeat from Danio rerio.";
RL   Repbase Reports 2(2), 8-8 (2002).
XX
CC   [1] (Consensus)
XX
CC   Putative novel CR1-like non-LTR retrotransposon with one open
CC   reading frame (pos 1-2898).
XX
SQ   Sequence 2898 BP; 749 A; 860 C; 474 G; 815 T; 0 other;
     atgtgttttc taattcctgt tgttactaac actcgcaaaa cacgggaggt gcgctgcagg        60
     cgtaatcctc acaaccttcg ttcaatacat gtatctacta tttcacaact ctctctctcc       120
     gtgggcctct ggaattgtca atcagctgtt aacaaggctg attttattac ctccatagct       180
     acatattctg actataatct catggctcta actgaaacct ggttgaggcc ggaggacact       240
     gctacacatg ctactctttc tgctaatttc tctttttccc acactcctcg tcagacaggg       300
     agagggggtg ggactggact actaatttcc aaagaatgga aatttactct gataccgtcc       360
     ctgccaacaa tcagctcctt tgaattccat gcagtcacca ttatccaccc cttctacata       420
     aatgtggttg tcatctaccg cccaccaggt aaattaggtc acttcctaga tgaactggat       480
     gttcttctct catctttttc taattttgcc actcccttat tggtgctagg tgacttcaac       540
     atttacgttg acaaaccgca agctgcagac tttcagactt tgcttgcctc ttttgaccta       600
     aaaagagcac ctacttctgc tacccacaaa tcaggtaatc agctagacct tatttacaca       660
     cgacactgct tcactgatca aacaatagta actccactac aaatatctga tcatttcctt       720
     ctgtctctca acatccacat tactcctgag ccgccacaca ctcctacact ggttaccttt       780
     cgcagaaacc tacgatctct ctcacccaat agactatcca ccattgtttc agactctctt       840
     cctccatctc gcaaactcac tgcacttgat tcgaacagtg ccactaatac actctgctcc       900
     acactagcat catctctaga ccgattatgt cctcttgcat ccaggccagc ccgtgccagt       960
     cctcctgcac cctggctctc ggatgctctc cgtgagcatc gctcaaaact tcgggctgcg      1020
     gagagaattt ggcggaaaac taaaaatcct gcacatctct taacatacca aactcttctg      1080
     tcctctttct cagctgaggt tacttctgca aagcagacgt attaccgtct gaaaatcaac      1140
     aatgccacta atcctcgcct actttttaaa acattttcct ccctcctcta tcctcctcct      1200
     ccacccgcat cctccacact tactactgat gactttgcta cattcttctg caccaaaact      1260
     gcaaaaatca gtgctcaatt tgctgcacct acaacaaaca cgcaagatac aacaccaaca      1320
     ccacacacac tcacctcttt ttctcagctc tctgagtctg aggtgtccaa acttgtgcta      1380
     tctagccatg caaccacctg tccactcgat cccattccct ctcatctctt gcaagccatc      1440
     tctcctgcag tcataccaac actgactcac ataattaaca catctcttga ctctggttta      1500
     ttccccacta catttaagca ggctagggta accccactgc taaagaaacc caacctggac      1560
     catacgctac ttgaaaacta cagaccagta tccctgcttc cattcatggc caagattctg      1620
     gagaaagtag tgttcaatca agttctggac tttcttactc aaaacaatct catggacaac      1680
     aagcaatccg gctttaagaa aggccactca actgagactg ccctgctctc ggtcgtggag      1740
     gatctcagac tggctaaagc agactctaaa tcatcagtcc tcattttgct ggacttgtca      1800
     gctgcttttg acactgtcaa ccaccagatc ctgctatcta cgcttgagtc actgggcgtt      1860
     gcgggcactg ttatacaatg gttcagatct tacctctctg acaggtcatt cagggtgtct      1920
     tggaggggag aggtgtccaa cctacagcat ctaaacactg gggtacctca aggctctgtt      1980
     cttgggccac ttctcttctc catctacaca tcatctctag gaccagtcat ccagagacat      2040
     ggattctcct accactgcta tgctgatgat acccagctat acctctcttt tcatcctgat      2100
     gatccctcgg ttccagctcg tatctcagcc tgcctgttgg atatttcaca ctggatgaaa      2160
     gatcatcatc ttcagctgaa cctcgcaaaa acggaaatgc ttgtagtttc tgccaacccg      2220
     actctacacc ataacttttc aatccagatg gatggggcaa ccattactgc atccaaaatg      2280
     gtgaaaagcc ttggagtaac gattgatgac caactaaact tctctgacca catttctaga      2340
     actgctcgat cgtgcagatt tgcactctat aacatcagaa agatccgacc cttcttatct      2400
     gaacatgcag ctcaactcct tgttcaagct cttgttctct ccaaactgga ttactgcaac      2460
     tctctactag ctgggcttcc agctaactct atcaagcctc ttcaactgct ccagaatgca      2520
     gcagcacgag ttgtcttcaa tgaacctaaa cgagcacatg tcactccgct gctagtccgt      2580
     ttgcactggc tgccagttgc tgctcgcatc aaattcaaaa ctctgatgtt tgcctacaaa      2640
     gtgacttctg gcctagcacc ttcgtatctg cactcacttc tgcagatcta tgtgccctcc      2700
     agaaacttgc gttctgtgaa tgaacgtcgc ctcgtggttc cagcccaaag aggaaaaaaa      2760
     tcactttcgc gaacgctcac gctcaatctg cccagttggt ggaatgaact ccctaactgc      2820
     atcagaacag cagagtcact cgctattttc aagaaacgac taaaaactca actatttagt      2880
     ctccacttca cttcctaa                                                    2898
//
ID   Gypsy-27-I_DR repbase;    DNA;    ZEB; 5177 BP.
XX
AC   .
XX
DT   11-FEB-2005 (Rel. 10.01, Created)
DT   11-FEB-2005 (Rel. 10.01, Last updated, Version 1)
XX
DE   An internal portion of the Gypsy-27_DR LTR retrotransposon - a
DE   consensus sequence.
XX
KW   GYPSY superfamily; Gypsy-27-I_DR; Gypsy-27-LTR_DR; Gypsy-27_DR;
KW   LTR retrotransposon; endogenous retrovirus; gag; integrase;
KW   reverse transcriptase.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-5177
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-27_DR, a family of LTR retrotransposons from zebrafish.";
RL   Repbase Reports 5(1), 27-27 (2005).
XX
CC   [1] (Consensus)
XX
CC   Gypsy-27-I_DR is an internal portion of the Gypsy-27_DR LTR
CC   retrotransposon that belongs to the Gypsy superfamily. Its
CC   long terminal repeat is deposited in Repbase as
CC   Gypsy-27-LTR_DR. Gypsy-27_DR is characterized by 4-bp target
CC   site duplications. The internal portion encodes one
CC   polyprotein: the 1632-aa Gypsy-27_DR1p (pos. 71-4966) composed
CC   of the gag, protease, reverse transcriptase, and integrase
CC   domains. The consensus sequence was built from 5 copies less
CC   than 1% diverged from the consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Gypsy-27_DR1p"
FT                 /translation="MEAENFLINFPDAAEGSCEGPSHNSPVTPQIDRSLLD
FT                 EDTGMEQPFIGAPILSSESRTDDLAVLVQAIDSLKSVFVDTVDRQKKWLQD
FT                 STELCTHEVPKKTLTVVEKAHSEFLDVLSDRMKEFTKHTIEAIQWNSKQTH
FT                 NEFKAMFDEANSSMFSSFKRALEESRVGEKTLQEEVCSLRKELLAMQTSLD
FT                 SFMQQRISLDTKVDEKVLVSGSQVCSNTSSHVDSSESISQPALSNLTCGRI
FT                 PPIKMVFPTFGGVNDESDPVIYLERCNDFLALRPMSNSEILATMRSVLHAS
FT                 ARDWWETVRFKINSWESFQKAFLAVFLPEDYQDVLEEKVRNRLQGTNESVR
FT                 DFAFSFQALFKRWKKEATDTEVLKALLKAMNPCYASQLRGRAQTVEELVRL
FT                 GTQLERDYDHQIKYNQLQLPKSSFLDQHLSKKSKGVEVKSNLPPEQSLTSL
FT                 LCWRCHENHSPGSCSKFKAVLSGKQTGGQFQGTKEFQPQNQQRGMLSAYDT
FT                 QRFVKKDVSSGRKLDKRDGIKILRQLVIPMMVRNCSGKALVDTGATYTLLN
FT                 VDLWNKIKEPNERLDVWHEGPLYLANGDATVPLGQKVLDFYLQDLHFQVPT
FT                 VVLPAQNLVYSMVLGLDFIALTGLQLNIKDQLYSFSDDPQGRVFPFQPPIT
FT                 PGDSWKCCKPPGNYNPSASLYSAIPPVQFVCTANECVDKSDVGESGSVLME
FT                 LLQSKIKESNLSERESHVLFTLLYDHPEVCTPNLGRTHLVQHKIAVSTDVV
FT                 VAQKPYRLPIHKKEIVKEQIDDMLNQDIIQPSHSPWASPIVLVPKKDGGQR
FT                 FCVDYRKLNAVSESDAFPLPTVNEILESLSGSGIFSTLDLNSGYWQVSMHP
FT                 DSMAKTAFVSPFGLYEFKVLPFGLKNAPATFQRLMNRVLADYLGQCCLVYL
FT                 DDIVVYSANFHQHVLDLQKVLRCLQRAGLTLKLPKCHFCLTEIKFLGHIVT
FT                 TDGVKADPAKTEAIQNFPVPTNLKELQRFLGMSGWYHRYVQNFSDIAEPLN
FT                 ALKKKGVRFQWTAECQVAFDCLKRHLSSPPVLGHPNHAHTFVVYTDASSTG
FT                 LGAVLAQRPSTFGASEEVLAYASRTLTSAEKNYSTTERECLAVVWAVERWR
FT                 HYLEGKSFIVVTDHASLLWVFNTTKTNSRLIRWALRLQEFEFILEYRKGKL
FT                 NSAPDALSRIDVPDSCPMVASYVPKQSTESMVSLFPLCDEDIWIAQQQDVE
FT                 IQRIYQSLAEGKQSDEGSGSEFVILEDKVYRKVSNPTKGTHFQIYVPQTLR
FT                 EILLEAYHSNPLSGHFGRYKTQKRLMQVAFWPNMWRDVSDFVKNCTSCQQN
FT                 KPECRKPAGKLQQTEVKEPWEMLGVDLMGPLPRSTLGNTQLLVVVDYYSHW
FT                 VEMFPLRKATAGVIAQTLRKEVLTRWGVPKFLLSDRGPQFTSEILKDLCSR
FT                 WGVVQKLTTAYHPQTNFTERVNQVIKVMISSYVFGEHNRWDHYLPELRYAI
FT                 NSAVQESTGYSPAELLLHRNLRGPFELVLEPHQTGLRVLKDLQEVVKRNVR
FT                 RAKEKQKRLYDARRRDVHFTRNDRVWMRAHPLSKASQAFAAKFAARWIGPY
FT                 RIVEKLGPVNYRIVREDNGEDLRTVHVCNLKPAFPSAGELDRRERERVLKI
FT                 FVEESEDEEFLGFE"
XX
SQ   Sequence 5177 BP; 1481 A; 944 C; 1190 G; 1562 T; 0 other;
     gatttggcgc ccaacgtggg gccctgagat atgctaaata tttagtggtt tttgtaattt        60
     ttgcttaata atggaagctg aaaactttct tattaatttt cctgatgcag cagaaggtag       120
     ttgtgagggc ccatctcata acagtcctgt tactccacag attgaccgat cattattaga       180
     tgaggacact gggatggaac agccatttat tggggctccg atcctctcct ctgaaagtcg       240
     gacagacgat ttagcagttt tagtccaggc aattgattct cttaaaagtg tatttgtaga       300
     tacagtagac cggcagaaaa aatggcttca ggacagtact gaactttgta ctcatgaagt       360
     tcctaagaaa acattaactg tggttgaaaa agcacattct gaatttttag acgttctttc       420
     tgaccgtatg aaagagttta ctaaacatac aattgaagct atacagtgga actcgaaaca       480
     gacacacaat gaatttaagg caatgtttga tgaggctaac tcttcaatgt tttcttcctt       540
     taagagagct ttggaagaat ctagggtagg agaaaaaaca ttacaggaag aagtatgcag       600
     cttgaggaag gagctacttg ccatgcaaac ttcgcttgat tcctttatgc agcagaggat       660
     ctcacttgac actaaagtag atgaaaaggt tctggtttct gggtctcagg tatgttcaaa       720
     tacatcttca catgtagact ctagtgagtc cattagtcaa cctgctcttt caaatttgac       780
     ttgtgggcgt attccgccta ttaaaatggt atttcctaca tttggaggag taaatgatga       840
     gtctgatcct gttatttatt tggagagatg taatgacttc ttagctctaa gaccaatgtc       900
     aaacagtgag atacttgcca ccatgcgtag tgttctgcat gcctcagccc gagattggtg       960
     ggagacagta agatttaaaa ttaattcttg ggaaagtttt cagaaggctt ttttagcggt      1020
     tttcctccca gaggattatc aggatgtgct cgaagaaaaa gtgcgtaatc gactgcaagg      1080
     gacaaatgaa agtgttcgag actttgcttt ttcatttcaa gctttattta aacgctggaa      1140
     aaaagaagct actgatactg aagttttgaa agctctttta aaagcgatga atccttgtta      1200
     tgctagtcaa cttcgtggcc gtgcacagac tgtagaggaa ctggtgagat taggaacaca      1260
     attagagaga gattatgatc atcaaataaa gtacaatcag ttacagttac ctaagagttc      1320
     ttttcttgac cagcatttgt ctaaaaaatc aaaaggggta gaagtaaaat caaacttacc      1380
     tccagaacaa agtttgacta gtttgctttg ttggcgatgt catgaaaatc attccccagg      1440
     ttcttgttcc aagtttaagg ctgtcctgag tggaaagcaa actggtggac aatttcaagg      1500
     aactaaagag ttccaacctc aaaatcagca acgaggtatg ctgtctgctt atgatactca      1560
     gcgctttgta aaaaaagatg tgtcatctgg taggaagctg gataagagag atggtattaa      1620
     aattcttcgt cagttggtta tccccatgat ggttcggaac tgtagtggta aagcacttgt      1680
     tgatacagga gctacttata cattgctcaa cgtcgattta tggaataaga taaaagaacc      1740
     caatgagcga ctagatgtat ggcatgaggg accactttat ctagctaatg gcgatgctac      1800
     tgttcctctt ggccaaaaag tactggactt ctatttgcag gatttgcatt tccaagttcc      1860
     aactgtagtt ctgccagctc agaaccttgt gtattcaatg gttttgggtt tagattttat      1920
     cgcactgact gggttgcaac tgaacattaa agatcaactg tacagttttt cagatgatcc      1980
     acaaggtcgg gttttccctt tccaaccgcc tattacacca ggggactctt ggaagtgttg      2040
     taaaccacct ggtaactata atccatctgc ttctttgtat tctgctatac ctcctgttca      2100
     gtttgtatgt acagcaaacg aatgtgtgga taagagtgat gtgggagagt ctggttctgt      2160
     attgatggag cttttgcaaa gtaaaatcaa ggagagcaat ctttcagaac gtgagtctca      2220
     tgttctgttt actcttttgt atgaccatcc tgaagtttgt actcctaatt tgggtagaac      2280
     ccatcttgtc cagcataaga ttgcggtttc aacagatgtt gttgtagctc aaaaaccata      2340
     cagactaccc atacacaaaa aggagattgt aaaggaacaa attgatgata tgctcaatca      2400
     agatatcatc cagccatctc attcaccctg ggcatctcct attgtgttag ttcctaaaaa      2460
     agatggaggg cagagatttt gtgttgatta tcgtaaactg aatgcagtca gtgaaagcga      2520
     cgcatttcct cttcccacag tgaatgagat cttggagtcc ctttctgggt cagggatatt      2580
     tagtactctg gatttaaata gtggatattg gcaggtgtcc atgcatccag atagtatggc      2640
     caagaccgct ttcgtctcac cttttggcct atatgagttt aaggtgttac cttttggcct      2700
     gaaaaatgca ccggccacat ttcaaaggct tatgaataga gtcttggctg actatctggg      2760
     gcagtgttgt ttagtgtatc tagatgacat agttgtctat tcggctaact ttcaccaaca      2820
     tgtcctagac ctccagaaag ttttgagatg tttgcagaga gcaggactaa ctctcaaact      2880
     tccaaaatgt catttctgtt taacagagat caagtttctt ggccatattg tgactactga      2940
     tggtgtaaag gcagaccctg ctaaaacaga agctattcag aattttccag tcccaacaaa      3000
     tttaaaggaa ctccaacggt ttctgggaat gagtgggtgg taccataggt acgttcaaaa      3060
     tttttcagat attgccgaac cacttaatgc tctaaagaag aaaggagttc gttttcagtg      3120
     gacagctgag tgccaggtag cgtttgactg cctcaaaagg catctttcct caccacctgt      3180
     acttggacac ccaaatcatg cccatacatt tgtagtttat actgatgcca gttcaaccgg      3240
     cttgggtgct gttcttgctc aacgaccctc cacttttggt gcatctgagg aggtgttggc      3300
     gtatgctagc cgtactctga catcagcaga gaaaaactat tctacaactg agcgggagtg      3360
     tttagcagtg gtttgggctg tagaacggtg gcggcattat ttggagggaa aatccttcat      3420
     tgtagtcact gatcatgcct ctcttctttg ggtgttcaac actacaaaaa caaattcccg      3480
     actgattcgc tgggctttga gactacagga gtttgagttt attcttgagt atcgtaaggg      3540
     gaagcttaat agcgccccag acgctttgtc tcggattgac gttcctgatt cttgtccaat      3600
     ggtagcttcc tatgttccta agcaaagtac agagagtatg gtgtcactat ttcctctttg      3660
     tgatgaggat atctggattg cacagcaaca agatgtagaa atccaaagga tatatcagag      3720
     cttagcagaa ggaaagcaga gtgatgaggg atctggctct gagtttgtca ttttagagga      3780
     taaggtctat aggaaggtgt ctaatcctac aaagggaact cattttcaga tttatgttcc      3840
     acagactctc agagaaattt tgttggaggc atatcactcc aatccattga gtggtcattt      3900
     tgggcgttat aaaactcaaa aaaggttaat gcaagttgcc ttttggccta atatgtggag      3960
     agatgtatct gactttgtga agaactgtac tagttgtcag cagaataaac cagagtgtcg      4020
     taagcctgct ggaaaacttc agcaaactga agtgaaggag ccttgggaaa tgcttggtgt      4080
     ggaccttatg gggccactgc ctcgtagtac cctgggtaac actcaattgt tagttgttgt      4140
     ggactattac agtcactggg ttgagatgtt tcctcttcgc aaagctactg ctggagtaat      4200
     tgcccagaca cttaggaagg aagtactgac tcgatggggt gttccaaagt tcctactatc      4260
     tgacagggga cctcaattta catctgagat tttgaaggat ctgtgtagca gatggggagt      4320
     ggtacaaaaa ttaacaacag catatcatcc ccaaactaat tttacggaac gtgtgaatca      4380
     ggtaattaaa gtcatgatct cctcttatgt gtttggtgag cataatcggt gggatcatta      4440
     cttaccagag ttgagatatg ccatcaactc tgctgttcag gagagtactg gatactcccc      4500
     agcagagtta ttattgcaca gaaatctgag aggacctttt gaacttgtgt tagagcctca      4560
     ccagactggt cttagggttc ttaaagactt gcaggaagtg gtaaaaagaa atgtgcgtcg      4620
     ggctaaggaa aaacagaagc gtttgtatga tgcgagacga agagatgtgc atttcacaag      4680
     aaatgataga gtttggatga gagcacatcc tctttctaag gcttctcaag catttgcagc      4740
     taaattcgca gctagatgga ttgggcctta tcgaattgtg gaaaagcttg gtccggtgaa      4800
     ctaccggatt gttcgggagg ataatgggga agatttacgt acagttcatg tatgcaattt      4860
     aaaacctgca tttccctccg caggggaatt agatcgtaga gagagagaaa gggtcctgaa      4920
     aatttttgtc gaagagtcag aagatgagga atttctcgga tttgaatagt cctgagatcc      4980
     agtaatcact taactgattt ccatatttat agatcagatt atttggtgag tagagttatt      5040
     ggtatggaaa gctgttgagt gtctttttat tgctgcataa tttttaggtc ttaaaaaacc      5100
     cctaaagatt tcttgtaagt aacttataga tcacaacctc tttaagtttg actgatcttt      5160
     ttccatgggg gggagag                                                     5177
//
