ID   FB4_DM      repbase;    DNA;    DRO; 4089 BP.
XX
AC   V00246;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Transposable element FB4 (foldback element) from Drosophila.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; DMFB4; FB4_DM;
KW   Repetitive sequence; transposon; unidentified reading frame.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4089
RA   Potter S.S.;
RT   "DNA sequence of a foldback transposable element in Drosophila.";
RL   Nature 297, 201-204 (1982).
XX
DR   GenBank; V00246; Positions       1    4089.
XX
SQ   Sequence 4089 BP; 1426 A; 636 C; 707 G; 1320 T; 0 other;
     agctcaaaga agctggggtc ggaaaaatcg aatttttgaa atttgaaagc tggaatcgtt        60
     tgcccatttt ttgcccatgt ttgcccacca attagttttt tttgcccacg tccagttttt       120
     gagatatgga ttttcgaaaa agttcgaaaa tgttcgaaaa tcaaaaattt cgcttttttc       180
     aaattttttt ttttttaaat cgcaataaca tcgtttgccc acgtttgccc accctttaga       240
     attttgaaaa aatttatact ttagaaaata taaggctttt aagtttacct cggtctaatc       300
     agagagtaaa tcgtttgccc atctcttaaa accaaatatt atcaacaaaa aacgtttgcc       360
     caaccattat tattagtttt tatcgtttgc ccacccttta aaaaaccttt aacaaaattt       420
     ttttttcgat tgcccacact tgaaatacaa ccaatttcgt tagcccacct cttcaaaata       480
     aatatttcca ataaaaaacg ttttcccacc atttaaaaat aaataatttc gattgcccat       540
     ccttcaaaat tcattttaac gtttgcccac cctttaaaat ttgttttttt cgtttgccca       600
     ctcttaaaac taaataattt cgattgccca ccttttaaaa ctaaataatt tcgtttgccc       660
     atcctttaaa attcattttt aacgtttgcc caccctttaa aaataaatta tttcgtttgc       720
     ccacccttta aaatttgttt ttttcgtttg cccactctta aaactaaata atttcgattg       780
     cccacctttt aaaactaaat aatttcgttt gcccatcctt taaaattcat tttaacgttt       840
     gcccaccctt taaaaataaa ttatttcgtt tgcccaccct ttaaaagttt ttttttttcg       900
     tttgcccact cttaaaacta aataatttcg attgcccacc ttttaaaact aaataatttc       960
     gtttgcccat cctttaaaat tcatttttaa cgtttgccca ccctttaaaa tttgttttgt      1020
     aagatgtggc gccaattcag atattttagg atcggcggat agaagcactt acttatatga      1080
     tgatgatgaa catacataga cataatatgt acagctgtgt tcagaaaaat agcagtgcga      1140
     aggaaactaa gtaatacaaa ggtatttttc catgtccctt ttcggaatcg actttttatt      1200
     cctcttattt ttgttaaatg gaatgtgtag atagggaaaa aaagaaaatc cggtcagttt      1260
     ttcttgttat ccttttttta tttacattct tgagcaaaat cacaattttt aggctgttca      1320
     taagaatagc agtgtctggt tctgaccaac gtaaagtccc gaaatgatca atattttcta      1380
     aaaagtgagt ttggttaagt taattcgtat atttaaaagg acaataaatt aaaaaaatta      1440
     aaaaaatttt attttagtgg gtagaggaca gcactactcc caggggaaaa gaatgttaat      1500
     tcttaagctt agaaaggaag gaaaaacata taaggacatt caaaaaaccc ttaaatgttc      1560
     tgccaaaatg gtatccaatg ccattaaata taaatggaag cccgaaaacc gtggtaccaa      1620
     acataaaacc acagatatag aggatcgacg cattgtttct tacagcaaag tctatcgttt      1680
     tgcatccttt agggacataa agtctgagct gaacttggga atcagcgacg ttactattcg      1740
     tagacgacta ctgaatcaaa atttcagtgc gaggagtcca cgaaaggttc ccctacctag      1800
     cccaaggcat attaaggcaa ggttaagctt agctaaaacc tacctaaact ggccagtctc      1860
     caaatggcgt aatatccttt ggactgatgg gtcaaaaatc atgctatttg gtggaactgg      1920
     ttcactacag tatatctgac gacctccaaa cacggagtat cacccaaaac acccagtgaa      1980
     gactttcaat cacggtggac ctaaaatcat ggtatgggct tgtttttttt ataatggtat      2040
     gagtcatgct atggattatg atttatggta ttatagacca aaacgcatat gtaaatatac      2100
     ttagtgatgt cttattgtca tattctgaat aaaatatacc cttaaaatgg acattccaac      2160
     aggataatga tcagaaacgc agatgtaaat cggctaagaa taggttcacc caaaatagaa      2220
     tagatgcaat gccgtggcaa gcaccacctt cccatttaaa cccgattgaa aacctgtatg      2280
     gggacattaa acagtttgtg tcgaagaagt ccccgacgtc taagactcag atttggcaag      2340
     ttgtgcagga tacatgggca aaaattcctc ccaaaccttg ctaggacttg gtggacttca      2400
     tgccgcgtgg gtgtaaggct gtgctggcta acaaaggcta tccagccaag tattaggccc      2460
     gaattaacat attaaaaaga aaaactaagt tcgttctagg tcaagttaaa ttttgttact      2520
     attttttcat agcactgcta ttttattgaa caccagaatt tctgcctatt tattgtttta      2580
     atctatattt tcgaaactat tgaagaaata aaagtgaaac atttgttaaa ttgtttgaaa      2640
     tgaaatacct aatgatatta ttaaaaaaaa attcccatta aaactgtaaa tcataggaat      2700
     tttttatctt aaactctgaa gtccaaagca ctgctattat tctgaacaca gctgtacata      2760
     acgaaataat ttatttttaa agggtgggca aacgttaaaa atgaatttta aaggatgggc      2820
     aatcgaaatt atttagtttt aagagtgggc aaacgaaaaa aacaaatttt aaagggtggg      2880
     caaacgaaat actttatttt taaagggtgg gcaaacgtta aaaatgaatt ttaaaggatg      2940
     ggcaaacgaa attatttagt tttaaaaggt gggcaatcga aattatttag ttttaagagt      3000
     gggcaaacga aaaaaacaaa ttttaaaggg tgggcaaacg aaataattta tttttaaagg      3060
     gtgggcaaac gttaaaaatg aattttaaag gatgggcaaa cgaaattatt tagttttaaa      3120
     aggtgggcaa tcgaaattat ttagttttaa gagtgggcaa acgaaaaaaa caaattttaa      3180
     agggtgggca aacgaaatac tttattttta aagggtgggc aaacgttaaa aatgaatttt      3240
     aaaggatggg caaacgaaat tatttagttt taaaaggtgg gcaatcgaaa ttatttagtt      3300
     ttaagagtgg gcaaacgaaa aaaaaaaact tttaaagggt gggcaaacga aataatttat      3360
     ttttaaaggg tgggcaaacg ttaaaatgaa ttttaaagga tgggcaaacg aaattattta      3420
     gttttaaaag gtgggcaatc gaaattattt agttttaaga gtaggcaaac gaaaaaaaca      3480
     aattttaaag ggtgggcaaa cgaaataatt tatttttaaa gggtgggcaa acgttaaaaa      3540
     tgaattttaa aggatgggca aacgaaatta tttagtttta aatggtgggc aaacgttttt      3600
     ttttggaaat ttttatttta aagaggtggg ctaacgaaat tgggtgtatt ttaaatgtgg      3660
     gcaatcgaaa aaaaattttt gttaaaggtt ttttaaaggg tgggcaaacg ataaaaacta      3720
     ataataatgg ttgggcgttt tttgttgata atatttggtt ttaagagatg ggcaaacgat      3780
     ttactctctg attagaccga ggtaaactta aaagccttat attttctaaa gtataaattt      3840
     tttcaaaatt ctaaagggtg ggcaaacgtg ggcaaacgat gttattgcga tttaaaaaaa      3900
     aaaaattttg aaaaaagcga aatttttgat tttcgaaaat tttcgaactt tttcgaaaat      3960
     tcatatctca gaaactggac gtgggcaaaa aaaactaatt ggtgggcaaa catgggcaaa      4020
     aaatgggcat acgattccag ctttcaaatt tcaaaaattc gatttttccg accccagctt      4080
     ctttgagct                                                              4089
//
ID   S2_DM       repbase;    DNA;    DRO; 1735 BP.
XX
AC   .
XX
DT   07-MAY-2001 (Rel. 6.04, Created)
DT   07-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   S2_DM is a DNA transposon, a consensus sequence.
XX
KW   Mariner; DNA transposon; Interspersed Repeat;
KW   Mariner/Tc1-superfamily; S2_DM; S_DM; TIR; transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1735
RA   Kapitonov V.V.;
RL   Direct Submission to Repbase Update (APR-2001).
XX
CC   [1] (Consensus)
XX
CC   S2_DM belongs to the Tc1 superfamily of DNA transposons.
CC   There are ~10 copies of S2_DM which are ~94% identical to the
CC   consensus sequence. Putatively, S2_DM lost its activity several
CC   million years ago.
CC   S2_DM has 235-bp terminal inverted repeats and it encodes
CC   345-aa transposase (positions 403-1437). The S2_DM consensus
CC   sequence is 70% identical to S_DM. Their transposases are also
CC   70% identical to each other.
CC   The S2_DM transposase is interrupted by stop-codon at its
CC   C-tail (position 1384). Since the tail is conservative in
CC   Tc1-like transposons from different species, most of genomic
CC   S2_DM copies has been transposed as non-autonomous elements.
CC   S2_DM transposase:
CC   MPGKRLSFEVVQLIFYNHHLGKSVKELSEMFSASRRTIYNVINRAKNEGRLDSKCGAGRKNKISNRSDRL
CC   IMRKIYENPQISLRTVAKELKEECDLDVSHETVRQAILRHKYHSRVARKKPMLSAINIEKRLTFAIKMQH
CC   QPEDYWNNVIFCDETKMMLYYNDGPNRVWRKALTALENRNIIPTVKFGKLSVMIWGCISSRGVGDLAFIE
CC   NTMNAEQFLNILKCNLTSSAKKFGFYKNNRPDFKFYQDNDPKHKALNVRNWLVYDCGKVIDTHPQNPDLN
CC   PIENLWVHLKKKVAKRSPNNRAALKAAILEEWHKIPQQYDLEKLFFQ*KKRLQYVINAKGMHTKY.
XX
SQ   Sequence 1735 BP; 597 A; 279 C; 317 G; 542 T; 0 other;
     cagtttgtca agaaattgtt tgcacaatga aaataaattg tattttctgc ctttcaatgc        60
     aaaattaagg gctttttgtt taccttatgg atttttttta atttacattt atttgtttat       120
     atgtttttta tcaatatgta aaaaaataat aacaaaacta ttaacaatga acgagaaaaa       180
     caactaaatc caagtttgca cagatttgac actgtcaaga aattgtttgc acacttttct       240
     tttgttttct attttgctcc tattccgagg aatttcgata atcaaacggt acataatcgt       300
     catttacgct ttatgcgttg tgtgggtggc cgatttatat gcatttggtt gtgaaatttg       360
     ccaaagtgat cattgttcca gttagttttg tgaaatttag aaatgcctgg caaaagattg       420
     agttttgaag tagttcaact gattttttat aatcaccatt tgggaaaatc tgtcaaggaa       480
     ttgtcagaaa tgttttctgc atcgcggaga acaatttata acgttattaa tcgcgcaaaa       540
     aacgagggca gattggattc aaaatgtgga gcaggacgta aaaataaaat ttccaaccgt       600
     tcagaccgac ttattatgcg aaaaatttat gaaaatccgc aaatatcctt aagaactgtt       660
     gctaaggagc ttaaggagga gtgcgatctg gatgtgtcac acgaaacagt gcgccaagcc       720
     atactccggc ataagtacca ctcacgggta gcaagaaaga aaccgatgct gtcggcaatt       780
     aacatcgaaa aacggcttac tttcgctatc aaaatgcaac atcagccaga agattactgg       840
     aataacgtaa ttttctgcga cgaaaccaag atgatgttgt attacaacga tggacccaac       900
     agagtgtggc gtaaggcgct aactgcgctg gagaaccgca acatcatacc gacagtcaaa       960
     tttggcaaac tgtcggttat gatttgggga tgcatatcta gtcgaggagt tggagatttg      1020
     gcattcatag agaacacaat gaatgcagaa caatttttaa acattttgaa atgcaatctg      1080
     acatccagcg ccaaaaaatt cggtttttat aagaacaata gacctgattt taaattttac      1140
     caggacaatg accccaagca taaggcgctt aatgtgcgga actggctcgt ttacgactgc      1200
     ggcaaggtca tcgatacgca tcctcagaat ccagatctga accctataga aaatttgtgg      1260
     gttcatttga agaaaaaagt ggcaaaaagg tcaccaaaca accgagcagc actgaaagct      1320
     gctatactag aagagtggca taagatccca caacaatatg atcttgaaaa gttatttttt      1380
     caatgaaaaa aacgtctaca atatgttatt aatgctaagg gtatgcatac aaagtattag      1440
     aattacctca agttattata atttgttata aactataagt ctaagatagc ttaagtactt      1500
     tgtgcaaaca atttcttgac agtgtcaaat ctgtgcaaac ttggatttag ttgtttttct      1560
     cgttcattgt taatagtttt gttattattt ttttacatat tgataaaaaa acatatgaat      1620
     aaatagatat taataaaaaa aattcatgaa ttttaataaa aggcctttat atttttgcat      1680
     tgaaagtcaa aaatacaatt tattttcatt gtgcaaacaa tttcttgaca aactg           1735
//
ID   FW2_DM      repbase;    DNA;    DRO; 3961 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.1, Created)
DT   11-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   FW2_DM is a non-LTR retrotransposon - a partial consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Interspersed Repeat; FW2_DM;
KW   JOCKEY clade; ORF1; ORF2; endonuclease; reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3961
RA   Kapitonov V.V., Jurka J.;
RT   "FW2_DM, a family of Jockey-like non-LTR retrotransposons from D.
RT   melanogaster.";
RL   Repbase Reports 2(10), 5-5 (2002).
XX
CC   [1] (Consensus)
XX
CC   FW2_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   FW2_DM is a separate family. Members of this family are ~95%
CC   identical to the FW2_DM consensus sequence. Therefore,
CC   this family was active a few million years ago. FW2_DM is 68%
CC   identical to FW. The sequence is incomplete, a ~500-bp 5'
CC   terminal
CC   portion of FW2_DM is not reconstructed yet.
CC   There are 10 copies of FW2_DM present in the sequenced portion of
CC   the D. melanogaster genome.
CC   The FW2_DM consensus sequence includes two open reading frames
CC   that
CC   encode the 417-aa FW2_DM-ORF1p (positions 2-1249) and 859-aa
CC   FW_DM-ORF2p (positions 1256-3832). These proteins are similar to
CC   the Jockey-like DNA/RNA-binding and endonuclease/reverse
CC   transcriptase
CC   proteins, respectively.
CC   FW2_DM-ORF1p (positions 2-1249):
CC   XSTTQTAIDRYIQIKRKLSPQNYSMGNKSKINCDITRQKTNMPNNDNRFAILADLDDLPNSDKDIKKTPK
CC   PPPIYIREKSSSALVNKKMDLIEKDSFHIIPLTKGNIHETKVQVKTEVNFRALTKYLNDAKKNFYTYQPK
CC   SSKGLQSSIKGLRPEITPEEISGAQIEQGFKPKSVINIFNKDKKPQPLFKVELEPDSWALKKNESHPIYK
CC   LQYLLHRRISVEEPHKRKGPVQCANCQEYGHTKTYCTLRTVCVACGELHSSVNCPSNKADPGMKKCSNCG
CC   GNHTANYRGCPVYKDLKNRLHQKVTMMRGQSTPSTIIPSKHTPDVHLNSLTNRNVTFASALKSGLASTNP
CC   TTPFPLAEQNKVNADQPTGQPQGNIETMIFNLQQSMTEFMTFMRTTMENLMRNQDLLIQMLVSQQSK
CC   FW2_DM-ORF2p (positions 1256-3832):
CC   MAPLRITLWNANGVSRHKLEMAQFLQDKHIDVMLLSETHLTNKYKFQINGYIFYGTNHPDGKAHGGTGVL
CC   IRNRIKHTFRNDFGTNYLQATSLNIQLGNGQITLAAVYWPPRFTISENQFLDFFNTLGDRFIAAGDYNAK
CC   HTHWGSRLVTAKGKLLYKTIIKVSNKLSCASPGTPTYWPTDPRKIPDLIDFAVTRNISHNHINAESLPDL
CC   SSLAGLINYLQYADLKNSPCRVTSNRTNWLKYKKFVSSHIQCLNPRKKQTVQYMQRKPNVQIEQLVLKKR
CC   RLRREWQSYRSPFAKQGLNNATHTIRKEVINEQECAQRPYIAQLSPFSTKYPLWGLHPSVSPPVESVVPI
CC   RNSAGEWVRSDKHRASTFAEHLQNVFQPKPATNNFVLQEQTVVSQTTQNTIEFRPTEIAKIIKELKPNKS
CC   PGSDLINPKMIIELPFCAVQTICQLFNAINRIGHFPSLWKKSIIIMIPKPGKDHTVPSSYRPVSLLPCMS
CC   KLFEKCLLTFIIPYLRTFNKIPEHQFGFQEKHGTIExVNRITTEIRTAFEKREYCTAIFLDVAQAFDRVW
CC   LDGLMHKIMSTLPECTHKLLKSYLHNRVFSVRCGTVTSEDHIIEAGVPQGSVLGPTLYLLYTADIPTSRQ
CC   LTISTFADDTAILSRSKCPRQATAQLALYLAHIEKWLSDWRIKVNEQKCKHVTFTLNRQDCPSLILNNTV
CC   IPKSNEVTYLGIHLDRRLTWRRHIEAKRTHLKLKANSLHWLLSIRSPLRLEYKVLLYNSVLKPTWTYGSQ
CC   LWGNASNSSVEIIQRAQSKILRTITGAPWYVRSDNLHRDLFILPVRDEIAKQMEKYRNKLRAHPNRLARD
CC   LTRLSSRTRLRRNDMPTQR.
XX
SQ   Sequence 3961 BP; 1386 A; 941 C; 701 G; 932 T; 1 other;
     atcgaccaca cagactgcta tagatcgata catacaaata aagcgaaaac taagcccgca        60
     aaattattca atgggtaata aatcaaaaat aaattgtgac ataacaagac agaaaactaa       120
     catgcccaac aatgataacc gatttgccat tttggccgat ttagacgatc tgccaaattc       180
     tgacaaagac attaagaaga cccctaagcc gcctccaatc tacatcagag aaaaaagttc       240
     cagcgccctc gtaaacaaaa aaatggacct tattgagaaa gacagtttcc acataattcc       300
     cctgaccaag ggcaacattc atgaaacaaa agtgcaagtc aaaacggaag taaacttcag       360
     agcgcttacc aaatacctca acgatgccaa gaaaaacttt tatacgtacc agccaaaaag       420
     cagcaaggga ctacaaagta gtattaaagg ccttaggcct gaaataaccc ctgaggaaat       480
     atcaggagcc caaatagaac aaggttttaa gccgaaatca gttatcaaca tatttaacaa       540
     agataaaaag ccacaacctc ttttcaaggt cgaacttgaa ccagactctt gggcattgaa       600
     gaaaaacgag agtcacccca tttacaagct gcaatatctc ttacaccgta gaatctctgt       660
     tgaagagccg cataagcgca aaggacctgt acagtgtgca aattgccaag aatatggtca       720
     tacaaaaact tattgtaccc ttcgcactgt atgtgtagct tgtggtgagc ttcacagctc       780
     tgttaactgc ccatcaaaca aagctgaccc cggtatgaaa aagtgtagta actgcggagg       840
     taaccacaca gcaaactaca gaggttgccc tgtatataag gatctaaaaa atcggctaca       900
     ccaaaaagtg actatgatgc gtgggcaaag cacgccgagc acaattatac cctcaaaaca       960
     tacacctgat gtccacttaa acagtctgac caacaggaac gtaacatttg caagtgcgct      1020
     taaatcaggt cttgcatcta caaatcctac aactccattc ccactcgctg aacaaaacaa      1080
     ggtaaatgct gatcagccaa caggacagcc acaaggcaat attgaaacaa tgatctttaa      1140
     cttgcaacaa agcatgaccg aattcatgac atttatgaga acaaccatgg aaaatcttat      1200
     gcgtaatcag gatctattga tacagatgct ggtatcgcag cagtcaaaat aatcaatggc      1260
     tcccttacgt ataactctat ggaatgccaa cggcgtttcg cgacacaagc ttgaaatggc      1320
     tcaatttctc caagacaaac atatcgatgt aatgctcctt tctgaaacac atcttacaaa      1380
     caagtacaag tttcaaataa atggttatat attctacggc accaaccacc ctgatggtaa      1440
     agcacatgga ggcactggag tcctgattag aaaccgcata aaacatactt tccgcaacga      1500
     ctttgggaca aactacttac aggcaacatc tttaaatata cagctgggta acggacaaat      1560
     aacacttgct gctgtatact ggccacctcg ctttacgata tccgaaaacc aatttttgga      1620
     ttttttcaac acactagggg atcgcttcat agctgctggt gactacaatg ctaagcatac      1680
     gcactgggga tctcgtcttg taaccgctaa gggaaaacta ttgtacaaaa caattattaa      1740
     agtaagcaac aagcttagtt gcgcctcccc gggcacacct acatattggc caacggaccc      1800
     cagaaagata ccagacttga ttgactttgc tgttacaaga aacatctctc ataatcatat      1860
     aaacgccgaa tctctcccag acctatcttc tctggccggg ctcattaatt atcttcaata      1920
     tgcggatctg aaaaattcac cctgtcgagt gacatccaat agaactaact ggctaaaata      1980
     caagaaattc gtaagttcgc acattcaatg cctgaaccca agaaaaaaac aaactgtaca      2040
     gtatatgcaa cgtaagccaa atgttcaaat tgagcagctt gtcttgaaaa agcgccgcct      2100
     acgacgagaa tggcaatctt atagatcgcc atttgcaaaa caagggctca ataacgcaac      2160
     tcatacaata agaaaggagg taatcaacga gcaggaatgc gcacaacgcc cctacatagc      2220
     gcaattatca ccctttagca caaaataccc attatgggga ctacacccct ctgtaagccc      2280
     accggtagaa tctgttgtgc caataagaaa ttctgcaggt gaatgggtcc gcagcgataa      2340
     acatagagct tctactttcg ctgagcacct tcaaaacgta tttcaaccaa agccggcaac      2400
     gaataatttc gtattacaag agcaaacagt tgtaagccaa acgacacaga atacaataga      2460
     atttcgacca actgaaattg ctaaaatcat taaggaatta aagcctaata agagccccgg      2520
     cagcgatcta ataaacccta agatgatcat cgaacttcca ttttgtgccg tccaaactat      2580
     ttgccagctc ttcaatgcaa taaatagaat tggccacttc ccttcgttat ggaaaaagtc      2640
     gatcatcatt atgataccga aaccgggaaa ggatcataca gttccatcat catacagacc      2700
     tgtaagttta ctaccatgta tgtcaaaact cttcgaaaaa tgtctgctga cctttattat      2760
     accctatctg cgaactttta acaaaatacc ggagcatcaa ttcggttttc aggagaaaca      2820
     tggaacaatc gaasaagtca atcgaatcac aactgaaatt cgaactgcat tcgaaaagag      2880
     agagtactgc actgccattt ttctcgacgt ggcacaagca tttgacagag tctggttaga      2940
     tggcctaatg cataaaatta tgtcaacact ccctgaatgc acccataagc ttttaaagtc      3000
     gtacctgcac aatagagtgt tctcagttag atgcggcact gttacgtctg aggaccacat      3060
     catagaagct ggggttcctc aaggcagcgt acttggccca acactatatc tactatatac      3120
     agccgatata ccaacatcga ggcagctaac aatatctaca tttgccgatg acactgcaat      3180
     cctgagccgc tctaaatgtc cacggcaagc tactgcacaa cttgctctct acctggcaca      3240
     tattgagaaa tggctttctg actggcgaat aaaagtcaat gaacagaaat gtaaacacgt      3300
     aacttttacc ctcaacagac aagattgccc ttcgctcata ctaaataaca ctgttattcc      3360
     aaaatcaaat gaagttacgt atctaggtat tcatcttgac agacgactca cttggcgtag      3420
     acacatcgag gcaaaaagaa cacacctcaa actaaaagcc aatagtctac attggcttct      3480
     tagtatacgc tctcccctaa gactagaata taaggtctta ctctacaact ccgtcctaaa      3540
     accgacctgg acctatggct cccagctatg ggggaacgcc agtaacagca gcgtagaaat      3600
     catccaacga gcccaatcga aaatcctgag aaccatcacc ggcgcaccgt ggtacgttcg      3660
     aagtgataac ttacataggg atttattcat acttccggtc agagatgaaa tagccaaaca      3720
     aatggaaaaa tatcgcaaca aactacgtgc ccatccgaac aggcttgcga gagacttaac      3780
     acggctatct agccgaaccc gacttcgtcg taatgatatg ccaacccaac gataattatt      3840
     agggccacac aaactcatat cagttgcaat agtaactgtt agttaagtac tttttaagat      3900
     ttgtaaactt attgttagtc tcataatgag aagcttcaat aaacaaacca acgcataaaa      3960
     a                                                                      3961
//
ID   INVADER1_I  repbase;    DNA;    DRO; 3186 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-JUL-2005 (Rel. 5.03, Last updated, Version 2)
XX
DE   INVADER1_I is an internal portion of INVADER1 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   endogenous retrovirus; GYPSY superfamily; INVADER group;
KW   INVADER1_I; INVADER1_LTR; gag; integrase; protease;
KW   reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3186
RA   Kapitonov V.V., Jurka J.;
RT   "INVADER1_I.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
CC   [1] (Consensus)
XX
CC   LTR of INVADER1 retrotransposon is listed in Repbase Update as
CC   INVADER1_LTR. INVADER1 can be an active retroelement since some
CC   of
CC   its proviral copies are almost identical and flanked by
CC   identical LTRs.
CC   INVADER1 generates 4 bp target site duplications upon its
CC   integration
CC   into the drosophila genome.
CC   INVADER1_I encodes gag, protease (peptidase A2), integrase and
CC   RT:
CC   1 32       897      1495 1896 1966 2499      3186
CC   111111==(=========)=(====)===(====)=(=====)=========111111
CC   LTR          |        |        |      \             LTR
CC   |        |        |       \
CC   |        |        |        \
CC   |        |        |         \
CC   gag   protease  Integrase    RT
CC   (peptidase A2,
CC   or retropepsin)
CC   INVADER1 belongs to the INVADER group of GYPSY-like transposons
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER2, INVADER3 and
CC   so on.
XX
SQ   Sequence 3186 BP; 959 A; 612 C; 728 G; 887 T; 0 other;
     tcagaagtgg gatcgcctat acctactttg aacaatgaaa atagtttgct gacaattttg        60
     gagtcgcaaa atcgtcattt ttccgaactt ttgaaacaag tgcaacactc acaaagagag       120
     tcaagagaat cgtttgctgt ggtattgccc aggtttaatc ctgaacgtgc gggatcagat       180
     gcgcaatcct ggtgttcaac ggtggactac atcttgtccg aaaaccaact ggaaggcagc       240
     gctcttgtga tgacccttag caaatcactg gaaggaagcg cgtctcattg gctttcacag       300
     acttgctttc ctggtatatc atggccacag ttccgagaat tgtttttgct acattttgcg       360
     ggaacagaaa cattagcggc agccgttatg aatctgctaa atggacgccc tgcggaaggc       420
     gagtgcctgt cgttatacgg aagccgaatg gttacttcgc ttatggccaa atggaagacg       480
     ctgagcgtgg agcaaatcgc agtctccatt acactggcgc atgcagctgg aattgacagg       540
     cgtttgcggc gtttagtttt cacttccgac atcaacactc ggaacgagct gaaccaagaa       600
     ctaaaggcct attcattcga cgctagaccg agccaccttc caaacgatgg tacatcagag       660
     ccgccaggaa aacgagctaa gccctacttc aagtgtcaca actgcggaaa gcctggtcat       720
     aaaaaggcgg attgtcgatc aaaaacagtg gcagtgcacg ttcagcaacc cgacaggcaa       780
     ccatcaggga aagaccggtc tactttgact tgtttcaact gcggaaaagc tggacacatc       840
     tccaccgtat gtcctgatcg tcaggagcgt tcatcgtcta gcaaaaataa cattgtttaa       900
     gatgtcaaca tctgtaccgt ttttgagccc gtacggacgt tttcgcaatc tggtgagtcg       960
     ttccaatttt gttttgattc tggagccgag tgttcactca tcaaggaggc tacttcgcag      1020
     agactatctg gatccagaat gggcaacgta gttattttaa ggggtcttgg tagcaatact      1080
     atttgtagca ctttgcagat attggctaat gttttgataa gtgaacgctc atatgaaata      1140
     ttgtttcatg tagtgttaga caattatatt aagtatgacg ctctgattgg tcgagatatt      1200
     ttgagccagg gagtcggtgt gacaataaca tcaaaatctc ttactatgtt taacgaaaaa      1260
     tctatattgt ctgttgaagt ttccgaaaag aatcccgatt tggctcatgt tgactttctg      1320
     tctcggaatc cggttccaaa aattgtcaag aattccatag gcgtagtcga aaggcatatc      1380
     aatctgacag aaatatccga caactggtta ttggctgaac agcaaagaga cgaagaaact      1440
     tcttccatta tctctaaatt gcgtaataat gaattgtccg aggatttggc caagacttat      1500
     gaactacggt ctggaactat gtaccgaaaa attcaaagaa atggaaagac tcgatgtctg      1560
     cccataatcc caaagcagtt taggtggtcc gctgtcaaca acgtacacga gtcagttatg      1620
     catctcgggt gggagaaaac tcttgagaaa atgtacgagt tctattggtt cgataaaatg      1680
     tctaagtatg ttcgccaatt tgtggacaac tgtatcactt gtagattatc aaaacctccg      1740
     tctggcaaaa tacaatccga actccatccc attcctaaaa ttgacatccc gtggcatacg      1800
     gttcatgtgg atattacagg taaacttagc ggaaaaagcg accagaagga gtatataatt      1860
     gtgatgatag acgcatttac caaatttgtc tatctctctc atactacgaa gctagacacc      1920
     gatagttgca ttaaggcagt gaggtctgtt atatcattat tcggtgtccc ctcccgactt      1980
     attgctgatc aaggtcgtag ttttgctagt tcagctttcc gtgatttctg ctcagcacag      2040
     aaaatggatt tacatttaat tgccgcaggt gctagtcgtg acaatggcca agtggagcga      2100
     gtcatgagta ctctaaagtc catgctgact gcggttgaaa ctggcccagg atcttggcag      2160
     gattctttat atgagattca gctggccctt aatagcacgc ccaatagagt tactaaagtc      2220
     agtccattag agatacttat tggcagagaa gcaaggccat ttgggcttac acctgttgta      2280
     aaagaacaaa atattgtcga tgttggctta gttagagaaa tagcaaaacg caacatggaa      2340
     aagaatgcca aaattgataa agctagattc gataaaaaca aagccactat tgtaagacac      2400
     aagctaggag accatgtttt acttaaaaat gaagagcgtc accagaccaa attagatcct      2460
     aagtttaaag gtccatttgt agtggccgaa gtattaccag gagatcgata taaactcaaa      2520
     gcattaaata ataaccgaac ttataaatat tctcatgaat ctttgcgatg tatgcctgag      2580
     aagaggatta ccacagtatt tgaagatgaa ggcacagaag atgccagtga tcaagccagt      2640
     gagggctgtg atcttgagaa tgactaaaaa tttgtaaacc tccggaccta ttccaaatgc      2700
     gactttctct acctcatggg tgcccgagtt aagtggttcg ccattttgtt gcagttaagc      2760
     ttaaatttgg taacggttgg tggtgtgagt taactggccg gcttatagac tgcgtcatct      2820
     gggtgccacg tatgttggcc ggattgtcga gttgtaagct gtgagctagg ctaacaaaag      2880
     atggactggc cggtttgaaa aactgtgcgc tagtagaaaa atgtattgaa aatcaagaac      2940
     gttaacgatt tatgtttgaa gaagacaaaa ttatgattgt ttgattgaaa gctgatggtg      3000
     gtccggttct catggcttaa atgtaataaa tgaaatgttt taaatatttg tattggtttg      3060
     atttaaagta ataaagaatg aagaataact ttatattttg aaaaaaaaaa taagcctttg      3120
     atagattctg tttaattatt gagagactgt tagcacacga ggacgtgtga taggtcagga      3180
     aggccg                                                                 3186
//
ID   Transib4    repbase;    DNA;    DRO; 2610 BP.
XX
AC   .
XX
DT   24-APR-2001 (Rel. 6.03, Created)
DT   13-JUN-2005 (Rel. 6.03, Last updated, Version 3)
XX
DE   TRANSIB4 is a DNA transposon, a consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; DDE-class;
KW   TRANSIB family; TRANSIB4p transposase; TRANSIB4.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2610
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements in the
RT   Drosophila melanogaster genome.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
RN   [2]
RP   1-2610
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements in the
RT   Drosophila melanogaster genome.";
RL   PLoS Biol 3(6), 181-181 (2005).
XX
RN   [3]
RP   1-2610
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   Pro 3(6), 181-181 (2005).
XX
CC   [3] (Consensus)
XX
CC   Transib4 belongs to the Transib superfamily of DNA transposons.
CC   It has generated 5-bp duplications of the CantG target
CC   sites upon its integration into the genome (it has happened
CC   a few million years ago).
CC   Transib4 has 40-bp terminal inverted repeats.
CC   There are ~10 copies of Transib4 which are ~93% identical to the
CC   consensus sequence.
CC   Transib4 encodes the Transib4p transposase (positions 497-2219).
CC   The transposase is not perfectly recovered since the genome
CC   harbors only a small number of Transib4 copies, which are damaged
CC   by mutations.
CC   Transib4p is 37-44% identical with Transib1p-Transib3p.
CC   There is 60-62% nucleotide identity between Transib4 and
CC   Transib1-Transib3.
CC   The original TRANSIB4 name was replaced by Transib4 [3].
CC   In [3], the correct page number is e181.
CC   Conceptually translated Transib4p transposase:
CC   CFLPLFALFCETFYVVGVYEFSHAVLLDVWSNNKRDADAVNSYILENIEENFETKEQKITISKKVNQFIA
CC   YANKHLRKCNRMLDRFKRNHLLWLASKIVVVIHKPEMTLCKPGRKQLTYEDAGPQPKKKISKLAGCRTRA
CC   FNTTSRTCCFNFRKKNEAGRNGLCIKKKSISSENIHDIKKKIETNHPIKISADNALALLIENGFTKQQYT
CC   NIKALNKQQGCDIFPPYSKVAEAKLKCRPSEHKISEKRPGVSxQDLLDHTAGHILLIQExVFCVHPDPTN
CC   CTFIVSYGFDGSTDQSTYKQRFLSNECIALDQFLFVTTIIPLKLIDEINNRVIWIHSSPQSVRFVGLxKL
CC   SLFIKESAALILKEKQILDAAIKNLRPYSYTSKNQIIAYTADQRSFSNSKIFSSVLNLDYKIIYNFYIIL
CC   ISISCEHTIDAEKFKSLFLSPTIHKILVHGYQIINQFIVPVGVLGENASEARNKLYKSDRKSHARKCSRL
CC   ANITDVFNRAVDSSDPLLSSLCLRDRSKFGKKKLLPKEVIDILQNPDAELYKSSYHSNNKEEEVEVEDEF
CC   NCLNIFLEEEVEE.
XX
SQ   Sequence 2610 BP; 903 A; 454 C; 446 G; 805 T; 2 other;
     cactatgggt aaaaagccgg aaattttggt attaatgtaa ttttttttgt gattgatatt        60
     ttaatgctgc tttcattttt tgattcctaa gtaacaagat agcataaaaa taattttaaa       120
     acatttttac gagttatcgt ttatttttgg cgcgctttca aagtcagctg attcagaggt       180
     gctttgaatt gtgaaaattg gcggaaaaag ttgaacaaat tgcagcgcaa acattgtctt       240
     catagcaaac tttgagttta tttttaatta tggaaaaaac aagtcagagt atgtaaatta       300
     ttcgtgaata cacgttttcc gataattgtg tgtggttgtt gttgaattgt ccaatgtatt       360
     gcttgtgagt attttcaatt gtttactaac aaacgttcta gtgttctgtg gaatattact       420
     tttgtatggc acaacgaatc accaaagtta aagttgtatg tttttaacaa atatatgtgg       480
     aatcaaatgg tattaatgtt ttttgcccct ttttgccctt ttttgcgaaa cattttatgt       540
     tgtaggtgtg tatgagttta gtcatgcagt tctgctggat gtttggagca acaacaaacg       600
     cgatgcagac gctgttaaca gttatatttt ggaaaatata gaagagaact ttgagactaa       660
     agagcaaaag attacaattt caaagaaagt gaaccaattt attgcttatg cgaacaagca       720
     cttaaggaaa tgcaatcgaa tgttggaccg attcaaacga aatcatttat tgtggcttgc       780
     gtctaaaatt gttgtcgtta ttcataagcc agaaatgaca ctatgcaaac ctggccgaaa       840
     acagttaaca tatgaagatg cagggcctca acctaaaaaa aaaattagca aattagctgg       900
     ctgcagaaca agggcattca acaccacttc tcgtacatgc tgcttcaatt tccgcaaaaa       960
     aaacgaagca ggcagaaacg gcctttgtat taaaaaaaaa agcataagca gtgaaaacat      1020
     acatgatata aaaaagaaaa ttgagacaaa tcatcctatt aaaataagtg ctgataatgc      1080
     tttagctctc ttaattgaaa atggatttac aaagcagcaa tatactaata taaaagcgct      1140
     caataagcag caaggatgcg atattttccc tccttattca aaagtagcag aagcaaaatt      1200
     gaaatgcagg ccttccgaac ataaaatttc tgaaaaaagg ccaggagtat cgtngcaaga      1260
     tttgctagat catacagctg gccacatact tttaatacaa gagnaagttt tttgtgttca      1320
     tccagaccca acgaattgta catttattgt gagctatggc ttcgatggat ctacggacca      1380
     aagcacgtac aaacaacgct ttctatcaaa cgaatgtatc gccctagatc aattcctttt      1440
     cgtcactaca attataccgt tgaaactaat agatgaaatc aacaatcgag ttatttggat      1500
     acattcatct ccacaatcgg tgagatttgt cggcctttga aaattgagtt tataaaggaa      1560
     agtgctgccc ttatattgaa ggaaaaacaa attttggatg cggctataaa aaaccttaga      1620
     ccatattcct acacttccaa aaaccaaata atagcatata ctgcagacca gcgttcgttc      1680
     tcgaacagca agatattttc gtccgttttg aatttggact acaaaatcat ttacaatttt      1740
     tatataattt tgatttcaat ttcttgtgag cacacgattg atgcggaaaa atttaaatct      1800
     ctatacctct attcttgtca ccaaccatcc acaaaatatt ggtacatgga tatcaaatta      1860
     taaaccaatt tattgttcct gttggtgtcc ttggagaaaa cgcgtcagaa gcgcgcaaca      1920
     aactttacaa gagcgataga aaatctcacg ccaggaaatg tagccgacta gcaaacatta      1980
     cagatgtttt caacagagca gtggattcat ctgatccttt gctttcaagt ctttgtttaa      2040
     gagatcgaag taagtttgga aaaaagaaac tcctcccaaa agaagtaatc gatattcttc      2100
     aaaatccgga tgcagaactt tataaatcaa gttatcattc taataataaa gaagaagaag      2160
     tggaagtgga agacgaattc aattgcctta atatattttt agaggaggaa gttgaagaat      2220
     gacaatcaac ttaataaaat ataaaaaaat ttattgactt ttatctcata ataatggttt      2280
     ttgcatcttg tgtcctcact tcgctcccac gccagtcccc cagggaagac acctccggat      2340
     ccaccggttg aaccacagac atattaacac ccacacctcc ttcgccaccc atccatctcc      2400
     ctttaaaacc gctttcattt gtatataaat acatttttca ctttattttc aaggattgtt      2460
     tttgtgggcg gagatgaagg cgtggtcaga tcaaaaaata aacaaaatcc gaaattctat      2520
     ttaaatccta attataaata taaaaaaaat caagtcgcta tctttaaaat tgtaattaat      2580
     accaaaattt ccggcttttt acccatagtg                                       2610
//
ID   R1-2_DM     repbase;    DNA;    DRO; 3216 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.1, Created)
DT   11-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   R1-2_DM is a non-LTR retrotransposon - a partial consensus.
XX
KW   Non-LTR retrotransposon; ORF1; ORF2; R1 clade; R1-2_DM;
KW   endonuclease; reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3216
RA   Kapitonov V.V., Jurka J.;
RT   "R1-2_DM, a family of R1-like non-LTR retrotransposons from D.
RT   melanogaster.";
RL   Repbase Reports 2(10), 27-27 (2002).
XX
CC   [1] (Consensus)
XX
CC   R1-2_DM belongs to the R1 clade of non-LTR retrotransposons.
CC   R1-2_DM is a separate family. Members of this family are ~92%
CC   identical to the R1-2_DM consensus sequence. Therefore,
CC   this family was active a few million years ago. R1-2_DM is only
CC   70%
CC   identical to R1_DM. The sequence is incomplete, its several
CC   hundred
CC   bp long termini are not reconstructed yet.
CC   There are ~15 copies of R1-2_DM present in the sequenced portion
CC   of
CC   the D. melanogaster genome.
CC   The R1-2_DM consensus sequence includes two open reading frames
CC   that
CC   encode a C-terminal portion of R1-2_DM-ORF1p (positions 1-716)
CC   and N-terminal portion of R1-2_DM-ORF2p (positions 719-3216)
CC   FW_DM-ORF2p (positions 1256-3832). These proteins are most close
CC   to
CC   the R1-like DNA/RNA-binding and endonuclease/reverse
CC   transcriptase
CC   proteins, respectively.
CC   R1-2_DM-ORF2p:
CC   MFSFLQANCGRGRAPTIELxVRLRDSGHLFALVQEPYVDL
CC   AGRITGVPSGMRVFSDRRGKAAVYVDSTDSICMPIEPLVTEFGVCVSVTGSFGSIFLCSVYCQFNTGLEQ
CC   YLGYLDAVLLLASRTPVILGLDANAVSPMWFSKLPERAQGSANYLRGELLSDWIQGCRAGVLNMPCDAFT
CC   FETPYARSDIDVTLTNDAASTCATYDWRVDEWDLSDHNIINVVVTRDPPNTVESFAPVPSWNFSAARWRP
CC   FEDEVTRLASELPDEFADTPLDDQVSAVRSLVHSVCDQVLGRRRPKTARKIVWWTAELSSKRQEVRRLRR
CC   RLQTARARASHDAEQLVSQLREISDQYKELILKYKEDNWRRLVGENKDDPWGQVFRICRGRKRTTELGCL
CC   RxGGRQYVTWHDCAGVLLRTFFPFSSFRHPLSFLKRFHHRLSSEVDACVARLKSRRSPGMDGITAVIFKA
CC   VWRAIPEHITAFYSRCIRSGYLPSKWKRTIAVALLKGSDKDRSDPASYRGICPLLFVFGKVLEGIMVNRL
CC   KDVLPDGSRWQFGFREGRCVEDAWRHVVSTVAANQAQYMLGIFVDFKGAFDHVEWDVVMRRLIDSGCREA
CC   SLWRSFFSGRSASLVSRYGEVTVPVTRGCPQGSISGPFIWNLMMDSLLQRLEPLRGFSALADDLLLFVEG
CC   TRIVLESKGEQLMSVVGAWEVGVAVLTSKTALLLGHFAQSRHTTVRFAGASLPYVDKYRYLGVTVVERLN
CC   VLPHIKSLRDRLTGVVQALARVLCVDWGLSPRARRTIYAGLMVPCALFGASVWYDGPSSAMRHLVSCQRR
CC   ILLGCLPVCRTVSTVAMQVLxG.
XX
SQ   Sequence 3216 BP; 692 A; 827 C; 943 G; 751 T; 3 other;
     cttgctcggc ggtagtgatg tgcgacgacc cgagcatacc tgggaagcag agtgctgagc        60
     gggtccgcaa ggaggtcgcc cctgccctcg gtgtccgtgt acacgaggtg cgtgagttga       120
     agtgcggtgg agccgtcatc cgcacaccat cggtgagcga gatgaagaag gtcgtcgcga       180
     acaagaagct tgccgaggtt ggtctcaaag ttcagccgaa gaagagccaa cgacccaaag       240
     tccaggtgtt cgacgtcgac agtggaatac agcctgatgg aggaattgta cgtcaacaat       300
     tcaaggaaga gttctcccca gccgctttca tgaaagaaat gcacctcaac acgaaaccgt       360
     ggtcagtcac cgatggcgaa agagctaatc tgacgcttga ggttgacgaa aaggcgctga       420
     acgtccttga gcagaccgga cgggtctata tcaagtggtt cagttaccgt tgccggtcgc       480
     tcgtccacac ctatgcttgc cataggtgcc ttggatttga ccacaaagtt tcccagtgca       540
     gggtcaagga aaccatttgt ccacaatgtg gacaagctgg ccacacagca cccagatgca       600
     cgaatccggt ggactgccgg aattgtcgtt ttaagggcca cccttcgagg cattcaatgc       660
     tgtccttcac gtgccccatc tacggtgcgg tgcttgcgag ggtgaacgct agacattaat       720
     gtttagcttc cttcaggcaa attgtggccg tggccgagct cctaccatcg agctcgsagt       780
     ccgcttgcgc gactctggcc acttgttcgc attggtgcag gagccttatg tggacctcgc       840
     tggacgaatc acgggagtcc catccgggat gcgtgtgttt tcggacaggc gtggaaaggc       900
     tgccgtctac gtggacagca cggattccat ctgcatgccg atagagccgc ttgtcaccga       960
     gtttggagta tgcgtgagcg ttactggaag ttttggctca atcttcctat gctccgtgta      1020
     ctgccaattc aacaccggac tcgaacagta cctcgggtac ttggatgcgg tgctgctgct      1080
     agccagccgc acgcctgtca tccttggtct cgacgcgaac gcagtatccc ccatgtggtt      1140
     tagtaaactc cctgagcgtg ctcagggatc agctaactac ttacggggtg agctgctgtc      1200
     tgactggatt caaggatgtc gagccggagt gctgaatatg ccgtgtgacg cgttcacatt      1260
     cgagactccc tacgcacgta gtgatatcga tgtgacactc accaacgatg cagcgtctac      1320
     gtgcgctacg tacgactgga gagtggatga atgggatctt agtgatcaca acattatcaa      1380
     cgttgtggtt acgcgagacc caccaaacac agttgagagc tttgctcctg tgccatcctg      1440
     gaacttctcc gctgcacgct ggcgcccatt tgaggatgag gtgacaagac tggcttcgga      1500
     actcccggac gaattcgccg acacgccgtt ggatgaccag gtctctgcag tgcgctcgct      1560
     cgtgcactct gtgtgcgatc aagtgctggg acgcagacga cccaagaccg caaggaagat      1620
     agtttggtgg actgccgaac tttcttctaa acgccaagag gtcaggagac tgaggcggcg      1680
     gcttcagacc gctcgtgcgc gcgcaagcca cgatgccgag caacttgtct ctcagttgag      1740
     ggaaatctca gatcagtaca aggagctcat tctgaagtac aaagaggata actggaggcg      1800
     cttagtggga gagaacaagg acgatccatg ggggcaagtc tttaggattt gccgtggccg      1860
     caaaaggaca accgaactcg gttgtcttcg ctnaggtggc aggcagtacg taacctggca      1920
     cgactgcgcg ggtgttcttc tccggacctt ttttccattc tccagttttc ggcacccact      1980
     gtcattcctg aagagattcc accaccgctt gtcctctgag gtagacgctt gtgtcgcaag      2040
     gttgaagagc agacgctctc ccggcatgga cggcatcacc gcggtgatat tcaaggcggt      2100
     gtggcgtgcc attcccgagc acatcacagc gttttactcc cgctgtatca gaagtggata      2160
     ccttccctct aagtggaagc gcacaattgc agtggcacta ctcaaagggt cggataagga      2220
     caggagtgat cctgcttctt accgcggtat ctgtccgttg ttgtttgttt tcggcaaagt      2280
     gctagagggg atcatggtga accgattgaa ggacgttcta cccgatggaa gcagatggca      2340
     atttggattc cgagaaggac gctgcgttga ggatgcttgg agacacgtcg tgagcactgt      2400
     tgctgccaac caggcacaat atatgctcgg aatcttcgtg gacttcaaag gagccttcga      2460
     ccacgtggag tgggatgtcg tgatgagacg actcatcgac tccggctgcc gagaagccag      2520
     cttgtggaga agcttcttct ctggcaggag tgcaagttta gtcagcaggt atggtgaagt      2580
     gactgttccg gtaacacgag gttgccctca gggatccatc agcggtccat ttatttggaa      2640
     ccttatgatg gactcacttc tccagcgtct ggagccactg cgtggtttca gcgcgcttgc      2700
     agacgacttg ttgcttttcg ttgagggtac ccgaatcgta ctggagtcga aaggcgaaca      2760
     gctcatgtcc gttgttggag catgggaagt cggcgttgcc gtcctcacca gcaagacggc      2820
     gctgctgctg gggcattttg cccagagtag gcacactaca gtacggtttg caggagcaag      2880
     cctgccgtat gttgataaat accggtacct tggcgttaca gttgtcgagc ggttaaatgt      2940
     tcttccgcat atcaagtcgc tacgtgatcg gctgactgga gttgtgcagg cattggcacg      3000
     cgttctttgt gtggactggg gcctcagtcc acgcgccagg cggacaatat atgccggact      3060
     catggtgcca tgtgccttgt ttggtgcatc ggtctggtat gatggaccca gctctgccat      3120
     gaggcatctg gtctcctgcc agaggcgaat cctgcttgga tgcctaccgg tatgccgtac      3180
     agtgtccact gtggcaatgc aggtgctcgs tggcgc                                3216
//
ID   GYPSY12_I   repbase;    DNA;    DRO; 5546 BP.
XX
AC   AE003789;
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   GYPSY12_I is an internal portion of the GYPSY12 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; GYPSY12_I; GYPSY12_LTR; endogenous retrovirus;
KW   gag; pol.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-5546
RA   Kapitonov V.V., Jurka J.;
RT   "GYPSY12, a family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 9-8 (2002).
XX
DR   Genbank; AE003789; Positions   46854   41309.
XX
CC   GYPSY12_I is an internal portion of the GYPSY12 endogenous
CC   retrovirus.
CC   Its long terminal repeat is listed in Repbase as GYPSY12_LTR.
CC   GYPSY12_I is flanked by 1% divergent LTRs. Therefore, the
CC   age of GYPSY12 can be estimated as ~0.3 Myr.
CC   tRNA-derived PBS starts at position 35 (there are several
CC   GYPSY12-like subfamilies that have the same feature).
CC   GYPSY12, OSVALDO and ULYSSES retroviruses from D. buzzatii and
CC   D. virilis, respectively, form a distinctive group of GYPSY-like
CC   retroviruses. GAG and POL encoded by GYPSY12_I are slightly
CC   damaged by several mutations. We recovered both proteins
CC   conceptually,
CC   based on alignment with known proteins. GYPSY12-GAGp shares
CC   common structural motifs with GAGs encoded by HIVs. GYPSY12-POLp
CC   is composed of protease, reverse transcriptase and endonuclease.
CC   GYPSY12-GAGp (positions 805-2217):
CC   MGLDRSPTRKSPSVSNPVCKLCAAEISTQDLYVTTCHHEFYRECIGNHFKKSEICSRCKLTCRPPAEATE
CC   RVGRETRSKTKNRRNSRRGSFDISQRCGEKLAVKLKIAATVDGGPSTSASGANANEASSSAVSANAALLA
CC   MERRLLATLSEKMADLVQNAITSSMQRIMPTPSPAVVVTASEMSADHPNAYERQYLASPNPVPSPRSASS
CC   DLFDRPDKVVHILNGWKIKYSGVGVSVDNFIYRVEAVTRQTLNGNFNLLCRNISVLFEGKANDFFWRYHK
CC   FDRVATMGTERFCTALRLQFRQSRDDGDIEELIRNTKQKPNETFDSFYDTVSELVDQLEQPWTANKLVRV
CC   LRNNLRPEIRHEILNLDVRTVSELREICKRREAFLADVRRCSSYAKDTPFKREISEVCHESEDEVRSTYE
CC   AENDIESFSLVCWNCRIEGHRYQECIAERRVFCYGCGAANTYKPSCRKCSKNFKVGMSKLPVKPKTSNAA
CC   RNQSTMTDQ
CC   GYPSY12-POLp (positions 2404-5374):
CC   KKCKASLDYISSIPTGPRDPRPFLPMRLLNCLVYGLLDSGASISCIGGGVVQAAMENEKFKSLIGEAATA
CC   DGNSQRIVGLLKIEVEYGDIKKLLKLYVVPSLKQDLYLGIDFWKLYDLLPANLKIAEILSPEPNQQTVVD
CC   QHELCEGDKAKLANVINCFPSFSQEGLGKTNLVSHSIDVGTARPVKQRHFPVSPAVEKAMYAEIDRMLRL
CC   GVIGESESAWSSPIVMVTKPGKVRICLECRKVNSFTEMDAYPLPQINGILSRLPRAEYISSLDLKDAYWQ
CC   VPLDPKSRDKTAFTVPGRPLYQFKVMPFGLCNATSTMSRLMDKVVPAHLRNEVFIYLDDLLIVSSCFESH
CC   LNVLRELALQIKRAGLTLNVAKSHFCMRRVRYLGHIIGDGGIRTDPEKVSAITDFPLPKSLKSLRSFMGL
CC   CGWYRKFVANFATLSAPLTDLMTTKRKFLLTKEAIEAFSKLKECLSKAPVLCSPDFAKPFAIHCDASKSG
CC   VGAVLVQVSEEGDERPIAFVSKKLNKAQRNYTVTEQECLAAIVALKNFRAYVEGLPFKIITDHASLKWLM
CC   SNHDLNSRLARWALALQRFKFEIEHRKGSLNVVPDTLSRVNEEIVAAMDLQEDLIVDFDSEFFQSGDYVK
CC   LVETVKENTSNFSDLKVESGFLYRKAEHLTGERMHDEYAWKLWVPKELVSKILARAHDSPLAAHGGIHKT
CC   LERIRRYYFWPGLVSDVRAYISACEVCKSTKSQNFTLRPPLGKAPESQRFFQRLFIDFLGPYPRSRSGNI
CC   GIFIVLDHFSKYVFLKPVKKIDSSVVIKYLEDELFMTFGVPEVILSDNGSQFRARTFQRLIRYGVKHTLT
CC   AVHSPQANASERVNRSVIAAIRAYLRLDQKDWDEFLSRICCALRSAVHSSIGTSPYYMVFGQHMITSGST
CC   YSLIRRLNLLDDRSLKFDRHESFEIMRKQAVDQMRNKHNENEKRCNIRSRVVSFVEGQEVYREISSQAVS
CC   KPVTTPSLDRRS.
XX
SQ   Sequence 5546 BP; 1583 A; 1135 C; 1335 G; 1493 T; 0 other;
     gtttagttaa gtataataat aaataagata aagtggcgcc caacgtgggg ccttagtgag        60
     ttattttaaa attcattaag actcgcgaat taatatcttc aatcctttct ttacattttc       120
     tgtctcactt ccaaaaattt ttgtgtttag aattggttgc ggagtacacg tcaagtccat       180
     actaatattg ctaactggcc ataactaaga ctgatcacaa aaattttcct aagtgtagca       240
     aaaggaaatg tggattttgc tgaggaaaac agagtaacag taacttcggt caggtttctg       300
     tcccggtttt atctacttcc ttgagctaac taaatgctat tctaaaaaaa agatcattaa       360
     cgcaacatga cggaaaatct ttgcgttact taagagaaat gcaagatcct catatagttg       420
     acgattttcc tctttttact attcgtttta aataagatag agtttcctat aagttggaat       480
     attcgtgcca aggaaaaggc acgatccagg acttcactgt tacacctact ggtggtgttg       540
     aaatttagtc taatatggaa tatcttattt taacgaaact cctatgcctt cgtgagaatt       600
     ttgagtctaa tatagaatat cttattttaa cgaaactcct atgccttcgt gagaattttg       660
     agccaaaata atagacagcc ctacgaaagg agaacatcaa gttcagtttt attatctttt       720
     cgcgccttat cgttgatatt tttacgtata agtttattct atttttgctc gccatttttg       780
     aaccggtaat ttttcgcaag tatgatgggg ttagaccgat caccaactag gaaatctcct       840
     agtgtctcaa accctgtttg taaattatgt gcagccgaga tcagcacaca agatttgtat       900
     gtgacaacct gtcaccatga attttacagg gagtgcattg gcaatcattt taaaaaaagt       960
     gagatctgtt cgaggtgcaa actaacctgt aggcctccag ccgaagcgac cgaaagggta      1020
     gggagagaaa ctcgcagtaa aactaaaaat cgccgcaaca gtagacgggg gtccttcgac      1080
     atcagccagc ggtgctaacg caaatgaagc tagttcaagc gctgtaagtg ctaatgcagc      1140
     tttgttagcc atggagcgta ggcttctagc aacgttgtca gagaagatgg ctgatttagt      1200
     acaaaacgct atcacctcaa gcatgcagcg aataatgccc actccgagtc cagctgtagt      1260
     cgttacagcc agtgaaatgt ccgctgatca cccaaatgca tatgagaggc agtatttagc      1320
     atcgccaaat ccagttcctt ctccacgaag cgcttcttcc gatttgtttg atcggccaga      1380
     taaagtcgtc cacatattaa atggttggaa aataaaatat tctggtgtag gagtgtcagt      1440
     ggacaacttt atatacagag tcgaagcggt tacaagacag acgttgaatg gaaatttcaa      1500
     cttgttatgt agaaacataa gtgtattgtt tgaaggcaag gcgaacgact tcttttggcg      1560
     ctatcataaa gcggtgaaat tctgtgagag aggttttgca cagccctacg actgcaattt      1620
     cgacagagtc gcgacgatgg ggacatagag gaactgatca ggaataccaa acaaaaacca      1680
     aatgaaactt ttgatagttt ctacgacacg gtatccgagt tagtcgacca gctagaacag      1740
     ccttggacag ccaacaaact tgtccgcgtg ctaagaaata atcttcgtcc tgagatccgc      1800
     catgaaattc taaacttaga tgtccgaacg gtgtcagagt tgagagagat ttgtaagcga      1860
     agggaggcat tcctggctga cgtcagaaga tgcagtagct acgcgaaaga tactccgttt      1920
     aaacgcgaga tctccgaggt ctgtcacgag agtgaagatg aggtgaggtc aacatacgaa      1980
     gctgagaacg acatcgaatc tttttcccta gtgtgttgga attgccgaat cgaaggacac      2040
     cgataccaag aatgtatagc cgaaagacga gtgttttgtt acgggtgtgg tgcagcaaac      2100
     acctacaaac caagttgtag aaaatgttca aaaaacttca aggtcggcat gtcgaagttg      2160
     ccagtcaaac cgaagacttc aaatgccgca aggaatcagt cgacaatgac cgatcagtag      2220
     agaacaccga taaaagtgtg tctctacccc tccctgacgt accaattaaa ccggctatta      2280
     gactgcttca cagcaaaatt tcggaattac gaaacgtctg catttcggat tccagaaaaa      2340
     ctgcaatttt taaacggaaa tctcgtagtg ctcgacgctt gaaattgttc tggaagaacg      2400
     taaaaaaaat gtaaagccag tttggattac atcagttcta ttccaacagg acctcgagac      2460
     cctcgaccgt tcttaccgat gcgcttattg aattgcctgg tctacggatt gttggattca      2520
     ggcgcatcga ttagttgtat tggaggaggg gtagtgcaag ctgcgatgga aaacgagaag      2580
     tttaagtcgt taataggaga agctgcgaca gcagacggga attctcaacg tatagtagga      2640
     ctgctaaaaa tagaagtgga atacggtgac atcaaaaagc ttttgaagtt gtatgtcgtt      2700
     ccatcgttaa aacaggatct ctatttggga attgactttt ggaaactata tgacctcctt      2760
     cctgctaatt tgaaaatagc tgagatattg tcgcctgagc ccaaccagca aacggtggtg      2820
     gatcagcacg aattatgtga aggtgacaaa gccaagttgg ccaatgtaat caactgtttt      2880
     ccttccttta gccaggaagg gttaggtaag acgaacttgg tctctcattc gatcgatgtg      2940
     ggcaccgcta ggcctgtgaa gcaacggcat ttccctgtct cccccgccgt cgaaaaagca      3000
     atgtatgcgg aaatcgaccg gatgttacgc ttaggggtga taggggagtc tgagagtgct      3060
     tggtcttcgc cgatcgtgat ggtgactaaa ccaggcaaag tcagaatttg tcttgaatgt      3120
     cgcaaggtta atagttttac ggagatggat gcatatccgt tgccccaaat aaacgggata      3180
     ctgagtcgtt tgccgagagc tgagtacata tcgagcctag atctgaagga tgcatattgg      3240
     caggtccctt tggatcctaa gtctcgggac aaaacagctt ttaccgtccc gggtagaccg      3300
     ttatatcagt ttaaagtcat gcctttcggg ttgtgtaacg ccacgagcac tatgtcacgg      3360
     ttaatggaca aagtagtgcc ggctcatttg agaaacgagg tttttatcta tttagacgac      3420
     ctactaatag tatcttcttg ttttgagagc catttgaatg tactgaggga gttagccctg      3480
     cagataaagc gcgcgggctt aacgctaaac gtcgccaaaa gtcacttttg tatgcgacga      3540
     gtacgctatt tgggccacat tatcggagac ggtggaattc gcacagaccc tgaaaaggtg      3600
     tccgcgatta ccgatttccc attgcctaaa agtttgaaaa gcttgcgcag tttcatggga      3660
     ttgtgcggat ggtacaggaa atttgtcgca aacttcgcga cactttctgc accattgact      3720
     gacttgatga ccacgaagcg gaagtttcta ctaacgaagg aggcaattga agcgttcagc      3780
     aagctcaaag agtgtcttag caaagctcca gtcctgtgta gtccggattt tgcgaagccg      3840
     tttgccatac attgcgacgc tagcaagtca ggcgtgggtg ccgtgctggt acaagtgtct      3900
     gaagaaggtg acgagcgtcc tatcgctttc gtttcgaaga agctgaacaa agctcaacga      3960
     aattataccg tcacagagca ggagtgtttg gccgcaatag tagctctcaa aaacttcaga      4020
     gcatacgtgg aaggactccc ttttaaaata ataaccgacc atgcttcgct caagtggcta      4080
     atgtccaatc acgatctaaa ttcacgactg gcgcgatggg cattagcttt gcagagattc      4140
     aagttcgaga ttgaacaccg taagggttct ttaaatgtcg tcccggatac attgtctcgt      4200
     gttaacgagg agattgtagc cgcgatggac ttgcaagaag acttaattgt tgatttcgat      4260
     tctgaatttt tccagtccgg tgactacgta aagttggtag agaccgtaaa ggaaaatacc      4320
     tcgaattttt ctgatctcaa ggtggagagc gggtttttat atagaaaagc cgagcacctg      4380
     actggagaac gaatgcatga cgaatacgcc tggaaacttt gggtccccaa agaattggta      4440
     tcgaagattc tggctcgcgc gcacgatagt ccgttagctg cgcatggtgg catacacaaa      4500
     accttggaaa gaatacggcg atattacttc tggcccggtc tcgtttcgga cgtgagggct      4560
     tatattagtg cgtgtgaggt ttgtaagagt acaaaatctc aaaatttcac tctcagacca      4620
     ccattgggaa aagcgcctga gtctcagcga ttcttccagc gtttgttcat tgattttctc      4680
     ggaccgtatc ctaggtcaag gagcggcaac ataggaatct ttattgttct ggatcatttt      4740
     tcgaaatacg tgttcttgaa acccgtaaag aagattgatt ccagcgtcgt cataaagtat      4800
     ctggaagacg agttgttcat gacgttcgga gtgcccgaag tgatactgtc tgacaatggt      4860
     tcccaatttc gagctaggac gttccagaga cttatacggc gttaagcaca cgctgaccgc      4920
     tgtccactcg cctcaggcaa atgcttctga gcgcgtgaac agatcagtaa ttgctgcaat      4980
     cagggcctat ctgcgtctcg accagaaaga ctgggacgag tttctcagcc gaatatgttg      5040
     tgcgttgagg tcggcggtgc attctagcat tggtaccagt ccctattata tggtatttgg      5100
     gcagcacatg atcacgtcag ggtcgacgta ttcgttgatc agacgcctaa atctcctgga      5160
     cgatcgttct ctaaagttcg accggcacga atctttcgag ataatgcgga agcaagctgt      5220
     tgatcagatg agaaacaagc acaacgagaa cgagaagcgg tgtaatatcc gttctcgtgt      5280
     ggtatcgttt gtcgaagggc aagaagttta tcgcgaaatt tcaagccaag ctgtttccaa      5340
     accggttaca acgccaagtt tggaccgacg ttcgtgaagt ctcgagttcg gaagaagatc      5400
     ggcaacgcgt attacgagct ggaggatctc caaggacgag ttgtgggtac ctatcatgcc      5460
     aaggacattc ggcagtaagg tgcttccagt cggtctcagc ctagtgtgtc tatgagtacc      5520
     ctagtctgag tgtagcgggg gggttt                                           5546
//
ID   GYPSY5_I    repbase;    DNA;    DRO; 6509 BP.
XX
AC   AE003485;
XX
DT   27-SEP-2000 (Rel. 5.08, Created)
DT   27-SEP-2000 (Rel. 5.08, Last updated, Version 1)
XX
DE   GYPSY5_I is an internal portion of GYPSY5 endogenous retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; GYPSY5_I; GYPSY5_LTR; endogenous retrovirus;
KW   env; gag; pol.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6509
RA   Kapitonov V.V., Jurka J.;
RT   "GYPSY5_I.";
RL   Direct Submission to Repbase Update (SEP-2000).
XX
DR   GenBank; AE003485; Positions  115953  109445.
XX
CC   GYPSY5_I is an internal portion of GYPSY5 endogenous retrovirus.
CC   GYPSY5's long terminal repeat LTR is listed in Repbase Update as
CC   GYPSY5_LTR. Presumably, GYPSY5 can be still an active retrovirus
CC   since it is flanked by 100% identical LTRs. Target site
CC   duplication is 4 bp-long (CCAG).
CC   GYPSY5_I internal sequence encodes
CC   gag:
CC   MSKLAKVKKLIPATRSSTRLSASLSDVREDQVALPPRIRPSSSSAPSTMTSSSETSNFSSPPPPISPQDI
CC   CLSLKIPDGIRDLTPYDGDPTTLNEFINNIEEILLLIRGTDKTPYGQFLLRAIKNKIEGKAKALLLSLGI
CC   GLNWDDIKEALIGKFADKRSEETLNFELHGLVHKRLPLQEFYERILDIQATYGRTMENMGIETAALNLKK
CC   ESFEKTCLYTFIHGIKGPLGSTVRAFRPRSLQEAYDVAIKERDIFMRENWSRQTQSSRSNNYNYNGRDYR
CC   RNDEHRVEKYNKKSEFDRNIRSRDQRGSYSKPRDNDRNFNKMRAIMPKEEDRKRYDRDNNYSRNHGNPGQ
CC   QRQTLNNIETAGVQELHNIDDKNFQLKASSDRRDT
CC   pol:
CC   LINFGPTSPLKFLVDTGATSSFINPELIEEHNQQTLNTPILITTALGSHKVNKIAKIKLFTKHNCNDTFP
CC   LLLFKFHNYFDGLIGMNTLNKILGVIDIPSKILSTPKFNFELLQQVKQKAELFNIEEASKILVMLPVTIK
CC   EGTFLFEDQKVSGNLFITGGLYTAHNYYSCMEVVNYSKKQEKLYLETPIEVNHFNTDEFYIVNDIKDYGT
CC   INSEKEKEKFSTLRLELLNSEETTAFKKLCKQFPNIFYKEGDKLTFTNRVKHSIKTTDEIPVHKRPFRYS
CC   PAEKTEITDQINKLLEQDIIRHSHSPWSAPVFLVPKKLDASNKKKWRLVVDFRQLNDKTIKDRYPMPNIN
CC   EILDKLGRAQYFSALDLASGYHQIEVEPKDRSKTAFSAVGGHFEFIRMPFGLSNAPATFQRVMDNVLAEF
CC   NGKFCLIYLDDIIVFSTSLQEHINHLSSIFKKLTLANLKLQPDKSEFLKKELEYLGHIVTEKGVKPNPKK
CC   IETIKAFPMPKTRKEIKSFLGLLGYYRRFIRDFAKITKPLTQQLKGKSDVTIDDNYIKTFEFCKTLLCND
CC   PILQYPDFTKSFILTTDASNVAIGAVLSQGTVGNDRPIAYASRTLSESETHYATIKKELLAIVWAVKYFR
CC   PYLFGNKFLLVTDHKPLVWLKNLKEPNSMLVRWKLQLLEYDCEVIYKKGSQNVVADALSRIVVELNTNEA
CC   RPITSDTEILTSNRPINEFAIQIILKIADCANDLLETPFKNKLRRIISRPLFDDQTMIDVLKTALRSNKT
CC   HAIYTTDTIFESVQKIYAAFFAPSKSYKIIRCTTYLDELRTPEEQVEYISDYHIKNNHRGIDETVSHIKR
CC   QIYFPCLKERVSQLINKCDICQTLKYDRQPQKPIFQLTETPNKPLDIVHIDLYSINNKTILTIIDKFSKF
CC   AEGYTIPSRDSINITKHMMFFFKTHGIPKTIVCDQGPEFAGIIFKELCNQYNITLHVTSFQQSSSNAPVE
CC   RLHSSLTEIYRIIFEKKKALKLNLDHDCILTETFITYNNAIHSSTKLTPYEVFTGRTHIFEQNYKAVSQQ
CC   DYMRELESYKNNLYVEVKEEFESQKLNKILKLNEDRVLPIAVQEGDTVFRKENRRNKLTPRFTQHKVADD
CC   NGVTFTTNKRQKIHKSKIKKRIRQNSR
CC   env:
CC   MTAAQLLHVQHVKENTPLAEIKLGEARTIKTYSSVAHVIELTELKNNLNKLESSLQNLQDEDSN
CC   DSITPIQRKIDQAREKIYSLTPNRREKRGLIDGLGNVIKKVTGNMDAEDAAKIETKFKQVFENE
CC   ENINKNLGQQISYNNDIIVNFNNMSDHFYKEQEKIERYINNFKNGISKELIVEDKKIRILQILN
CC   IINNNIDILQNHIHDIAESILLAKFKIIPNFILPIQELKDIAQIFKLQNFSINSEEHIYRLLNI
CC   EIESKKTKIIFHIKIPIFDKYTYTLSHLIKLPINGTNFLTLPKYILYDDKFNYMLSFQEKCSRI
CC   HGTYICDPGTAESNMANRECVKQVLQGMNPVCEAKIINTDEAVVEPEQQWIVIISKNQLRAEPS
CC   CAEPFTIEGTTDYQSHKLFHIYRRYQIR
CC   GYPSY5 belongs to the same group of GYPSY-like retroviruses
CC   together
CC   with ZAM, ACCORD, TIRANT and QUASIMODO retroviruses.
XX
SQ   Sequence 6509 BP; 2542 A; 1213 C; 1074 G; 1680 T; 0 other;
     ggcgcagtcg gaaactggac ctgatgcagc tccttttcat cacaattatt caacacgaat        60
     ccatcgttca tcatctgcaa acaaaaaata ttcaacacac aattaattaa gtatacataa       120
     aaacacacaa ttaattaagt atacataaaa aacacacaat taattaagtt cacgtacaca       180
     gatatacact attaattaaa tacatacact taattttttt ttttttttta cacaattaca       240
     cagaattaag aattaaagga tttctctaaa agagtaaatg tctaaacttg ctaaagtaaa       300
     gaagcttatt ccggcgacta gaagtagtac tcgtttgagt gcgagcttat cagacgttag       360
     ggaagaccag gttgccctac cacccagaat tagaccttct tcgagtagtg caccaagcac       420
     aatgactagt tcgtcagaga caagtaactt ttcttcccca ccccctccaa tttcccctca       480
     ggacatttgc ctatccctaa aaattccgga tggcattcgc gaccttactc cctatgatgg       540
     agatccaact accctaaacg aatttataaa taatatcgag gaaattcttc ttctcattag       600
     aggcacggat aaaactccgt atggtcagtt cttgttaaga gcaataaaaa acaagataga       660
     aggtaaagca aaggcgttat tattatcatt aggcataggc ttaaactggg atgacatcaa       720
     agaagcatta atagggaaat tcgctgacaa aagaagcgaa gaaactctaa actttgaact       780
     tcacggactt gttcacaaga gattgccact gcaggaattt tacgaacgaa ttttagacat       840
     ccaagcaact tacggtagaa ccatggaaaa catgggaata gaaacagcag cactaaatct       900
     taaaaaggaa tcttttgaaa aaacatgctt gtatacgttt atacacggca ttaaaggccc       960
     attggggtct actgtcagag catttagacc taggagtctc caagaagcct atgatgtggc      1020
     aattaaggaa agggatattt ttatgagaga aaattggtct agacaaacac agagttcgag      1080
     atcaaacaat tacaattata atgggagaga ttatcgtaga aatgacgaac atcgggttga      1140
     gaaatataat aagaaatcgg agttcgaccg aaacatcaga tctagggatc aaagaggaag      1200
     ttattcaaag cccagagaca acgacagaaa ttttaacaaa atgagggcta ttatgccaaa      1260
     agaagaggac agaaaacgct atgacagaga caataattac tcacgaaatc acggaaatcc      1320
     gggacagcaa agacagaccc ttaacaatat tgagacagca ggtgtacagg agttacataa      1380
     tattgatgat aaaaattttc aattaaaagc ctcgtcggac agacgggata cttagaaaaa      1440
     tttaaagttg gaggttcctt attgtacatt ttaattaact tcggtccaac cagtccacta      1500
     aaatttctag tggacacagg tgccacttct tccttcatta atccagaact tattgaggaa      1560
     cataaccaac aaaccctaaa tacaccaatc ttaatcacaa cagcactagg ctctcataaa      1620
     gtaaacaaga tagccaaaat aaaattattt actaaacaca actgtaacga tacctttccg      1680
     ttacttctct tcaaatttca taattatttt gacggtctta taggcatgaa cacgttgaat      1740
     aaaattttag gagtaataga tataccaagt aaaatcttat caacacccaa attcaatttt      1800
     gaattactgc agcaagtaaa acaaaaagct gaattattta acatagaaga agcatccaag      1860
     atattggtaa tgctacccgt cacaattaag gagggtacat ttttatttga agaccaaaag      1920
     gtttcaggaa atttgtttat taccggaggc ctgtacacgg cccacaacta ttacagttgt      1980
     atggaggtgg taaactattc caagaagcaa gaaaaattat acctagaaac accaatagag      2040
     gtaaatcact ttaacacgga cgaattctat atagtaaatg atattaaaga ctatggtacg      2100
     ataaactccg aaaaggaaaa agaaaagttc agtaccctaa gattagaact tttaaattca      2160
     gaagaaacaa cggcgttcaa aaaattatgc aaacaatttc ctaatatatt ctacaaagaa      2220
     ggagacaaat taacattcac taatagagtc aaacatagca ttaaaaccac tgacgaaata      2280
     ccagtacaca aaagaccttt cagatacagt cctgcagaaa aaacagaaat aaccgaccaa      2340
     attaacaaac tcctagagca ggacataatt aggcacagcc attcaccttg gagtgctcca      2400
     gtttttctgg tcccaaagaa attggacgct tcaaataaga agaaatggag actggttgta      2460
     gatttcagac aattaaatga caagacgatc aaagatagat acccaatgcc caacatcaat      2520
     gaaattctag acaaactagg gagagctcag tatttttcgg ccctagatct agcaagtggt      2580
     taccaccaaa ttgaagtgga gcctaaagat agatcgaaaa cagccttttc cgcagtaggt      2640
     ggtcatttcg aattcatccg aatgccattc ggcttatcta atgcacccgc aaccttccaa      2700
     agggtgatgg ataatgtctt ggcagaattc aatggcaaat tttgtctgat ttatctcgac      2760
     gacataatag tattctcgac gtccttacaa gaacatatca accacctaag ctcgatcttc      2820
     aaaaaactca ctctggcaaa tttaaaactt cagccagata aatcggaatt cctcaagaag      2880
     gaattagaat atcttggcca catagtgacc gaaaaaggcg ttaaaccgaa tccaaagaaa      2940
     attgaaacta ttaaagcctt ccctatgcct aaaaccagaa aagaaattaa gtcattcctg      3000
     gggttgctgg ggtactatag aagatttatc agagattttg ccaaaatcac taaacctcta      3060
     actcagcaac ttaaaggaaa gtcagacgtg accatcgacg ataactatat taaaacattt      3120
     gaattttgta aaacactctt atgtaatgac cccatactac agtatcccga cttcactaaa      3180
     tcgtttattt taacaacaga tgctagtaat gtagcaatag gagcagtgtt gtcccaagga      3240
     actgtaggaa atgatagacc tatagcatat gcaagtagga cactatcgga gtccgaaacg      3300
     cattatgcca ccataaaaaa agaattactg gcaatagtgt gggcagtgaa atattttcga      3360
     ccatacttat ttggaaacaa atttctactg gtcactgatc acaagccttt agtttggtta      3420
     aaaaacctaa aagagcctaa ttccatgtta gtgagatgga aactccaact cttagaatat      3480
     gactgtgaag tcatttataa aaaaggttct caaaacgtgg tggcagatgc attaagcaga      3540
     attgttgtcg aactcaacac taatgaagcc agaccaataa cctcagatac agaaatttta      3600
     acctctaaca gaccaataaa tgaatttgca attcagatca tattaaagat tgcagattgt      3660
     gcaaacgact tattggaaac accttttaaa aataaactca gacgaattat ttccagacct      3720
     ctgttcgacg atcagacaat gatagacgta ttaaaaacgg cactaagatc aaataagacg      3780
     catgcaattt ataccactga tacaattttc gaatcagtgc aaaaaattta tgcagcattt      3840
     ttcgctccaa gtaaatcata taaaattata aggtgtacaa catatttaga tgaactccga      3900
     acaccagaag aacaggtcga atacatatct gactaccata tcaagaacaa ccataggggc      3960
     attgacgaaa ccgttagtca tattaaacga cagatttatt tcccctgttt aaaagagagg      4020
     gtttcccaac tgataaacaa atgcgacatt tgtcaaaccc tcaaatatga tagacaacct      4080
     cagaaaccaa tatttcagct aacagaaaca cctaataaac cactagacat tgtacacata      4140
     gatctatact caattaacaa taaaaccatt ttaacaataa tagacaaatt ttcaaaattt      4200
     gcagaaggtt acactattcc atctcgagat tccattaaca tcactaaaca tatgatgttc      4260
     ttcttcaaga cccatggtat tcccaaaaca atagtttgcg atcaaggccc cgaatttgca      4320
     ggaattattt tcaaagaatt gtgtaatcaa tacaatataa ctttacatgt aacatctttt      4380
     caacaatcaa gtagtaatgc cccagttgaa agattacatt catcgttgac ggaaatttat      4440
     aggataattt tcgaaaagaa aaaggcatta aaactcaacc tagaccatga ttgtatccta      4500
     acagaaacat ttataacgta caacaacgcc atacactcgt ctacaaaatt gactccatat      4560
     gaagttttta caggacgaac ccatattttc gaacaaaatt ataaggcagt cagtcaacaa      4620
     gactacatga gggaactgga aagttataag aacaacttat atgtagaagt aaaggaagaa      4680
     tttgaaagtc aaaaactcaa caaaattcta aaactaaatg aggacagagt attaccaata      4740
     gcggtacagg aaggagatac tgtttttaga aaggaaaata ggagaaataa gctaacaccc      4800
     agatttaccc aacacaaagt agctgatgat aacggggtaa cctttacaac gaacaaaaga      4860
     cagaaaatac ataaatcaaa aattaaaaaa agaatcagac aaaatagtag ataaatatat      4920
     aataatatca tttcaggtta tacatgacag cagctcaact gctccatgtt caacatgtta      4980
     aggaaaatac ccccctagca gagatcaaac tgggagaagc aaggaccatt aaaacatata      5040
     gttcagtggc ccatgtaata gaactaacgg agttaaaaaa taatttgaat aaattagaat      5100
     caagtctaca aaatttacaa gatgaagact ctaatgattc aataacaccc atacaaagaa      5160
     agatagacca agcaagagaa aagatctatt ccttgacccc aaaccgaaga gaaaagagag      5220
     gcttaataga cggtctaggt aatgttataa agaaagtaac tgggaacatg gacgcagagg      5280
     acgcagctaa aatcgagaca aaatttaagc aagtatttga aaatgaagaa aacattaaca      5340
     agaacctcgg gcaacaaatt tcttataaca acgacataat cgtaaatttt aataatatgt      5400
     ctgatcattt ttataaagaa caggagaaaa ttgagaggta cattaataac tttaaaaatg      5460
     gcatttctaa ggaattaata gtagaagata agaaaattag aattttacaa atattgaata      5520
     taataaataa taatatagat attctccaaa accacataca tgatatagct gaaagtatac      5580
     tattggctaa attcaaaata attcccaatt ttattttacc tatacaagaa ttgaaagata      5640
     ttgcacagat ttttaaactt caaaattttt ctattaattc agaagagcat atttacagac      5700
     tactcaacat agagatagaa tccaaaaaaa caaaaataat atttcatata aagattccaa      5760
     tatttgataa gtacacttac acactttctc acctaattaa attacctatc aatggcacga      5820
     attttctcac tctacccaaa tatatattgt acgatgataa atttaattat atgttaagtt      5880
     ttcaagaaaa atgttcaaga atacatggca cttacatctg cgaccccgga actgcggaaa      5940
     gtaacatggc caacagggag tgcgtgaaac aagtgctaca aggaatgaac cctgtttgcg      6000
     aggcaaagat tatcaacacg gacgaggcgg tagtagaacc ggaacaacag tggattgtca      6060
     ttatcagcaa gaatcaacta agggctgaac caagttgtgc tgaaccgttc actattgagg      6120
     gaacgacgga ttatcaatca cataaactgt tccatattta tagacggtac caaatacgat      6180
     gacagcgaat tgttctacca agaaaggatt aaattatcac taccaagtaa cgaagaacat      6240
     atctataaat gcaacatcgg aggatttaag cctaagcaaa atagtactgc atcttcaaga      6300
     gaataaagct aaaatattcc aagtcaagga atctacggat taaccttcga ttcataacct      6360
     acggcatcaa gtatcatcct ggtcatattt atactgtatg ctttagcagt aaggagaaac      6420
     actacttacc tgcccaaccc tgttacctca gtcaactacg ttccgtctat tccttcgtta      6480
     tggccgtcac tttattcaag ggggggagg                                        6509
//
ID   HETA        repbase;    DNA;    DRO; 6081 BP.
XX
AC   U06920;
XX
DT   30-JUN-1999 (Rel. 4.05, Created)
DT   30-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon HeT-A.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; HETA; telomere.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6081
RA   Danilevskaya O., Slot F., Pavlova M., Pardue L.M.;
RT   "Structure of the Drosophila HeT-A transposon: a
RT   retrotransposon-like element forming telomeres.";
RL   Chromosoma 103(3), 215-224 (1994).
XX
RN   [2]
RP   1-6081
RA   Pardue L.M., Danilevskaya N.O., Lowenhaupt K., Wong J., Erby K.;
RT   "The gag coding region of the Drosophila telomeric
RT   retrotransposon, HeT-A, has an internal frame shift and a length
RT   polymorphic region.";
RL   J. Mol. Evol 43(6), 572-583 (1996).
XX
RN   [3]
RP   1-6081
RA   Danilevskaya N.O., Lowenhaupt K., Pardue L.M.;
RT   "Conserved subfamilies of the Drosophila HeT-A telomere-specific
RT   retrotransposon.";
RL   Genetics 148(1), 233-242 (1998).
XX
RN   [4]
RP   1-6081
RA   Pardue M.;
RT   "HETA.";
RL   Direct Submission to Genbank (17-FEB-1994)Mary-Lou Pardue,
RL   Massachusetts Institute of Technology, Biology, 77 Massachusetts
RL   Avenue, Cambridge, MA 02139, USA.
XX
RN   [5]
RP   1-6081
RA   Pardue M.;
RT   "HETA.";
RL   Direct Submission to Genbank (11-MAR-1998)Mary-Lou Pardue,
RL   Massachusetts Institute of Technology, Biology, 77 Massachusetts
RL   Avenue, Cambridge, MA 02139, USA.
XX
DR   GenBank; U06920; Positions    1016    7096.
XX
CC   HETA is a telomere specific LINE-like retrotransposon; it forms
CC   tandems and its promoter is located at 3' UTR.
XX
SQ   Sequence 6081 BP; 2199 A; 1545 C; 1032 G; 1305 T; 0 other;
     aaataaataa aataaattaa acaattaact aaataattaa ataactaaaa ttaataatat        60
     aatccgttcg cttgccaaag actctcacgc gcataactaa ttaaaatcga ttttcaagtt       120
     gacaaataaa tggtttaaaa ttgtcctcag gctgcaaaga aaagccgcgg caacaataaa       180
     catttagtga cacgcgaaaa gcgaacattt gattagtgta atacttgtgc aaaccgacaa       240
     gctgccgcca taacaaaacg gagacgaaga atcataaaga acaaaagcta aatccaccag       300
     catagcaaaa ataaattaac aaataaaata aaagcaaatt taaataacat aataaattaa       360
     acttatttaa taaaccaatt aattttaatt aattcaatta aacgctaaat ctacataata       420
     ctccacgcgc aaattaattg aaatcgtctt tctagttaat aaattaaaag tttaaaaatt       480
     gtctccggcc gcaaaatttg aaccgcgacg ataaaaacat ttaattgaca aacaaaaagc       540
     gaacaattat tcagtgaact atttgtgcaa aattgacaag cagacgccat aattaaaagg       600
     agaagaagcc aaaagacgaa gagaagaaag caaccagaag aactcaaaga agaaaaggag       660
     gaaagcccaa ttaaagaaag ccagggtatt tataccttac acttatcgtt taatataaca       720
     aaaacccaac atgtccatgt ccgacaacct tttttctgac gatgaggtac tttcaatttc       780
     ctcaagccca gaacagcgat cttctccgtt ctacctcaat atatcgccca tgtcccacgg       840
     atcagacaat tctcagatta atacagtcat cattaattcg aagaaattgc cctcaaatca       900
     agcagacata agtttaaaaa actcttctgg ggctgctata aaaattgtta attccctttc       960
     acacaagaag aaagagaaca caaacgttaa taatgcccaa aaagaccccc tctcactcac      1020
     caatactact gcaagcactt gtggcgccaa aagcagcatc tcagagggga aattgtcttc      1080
     tcctccgtcc acctcacaca catatgaggg gaaattactc acaaaactta ctcacacaca      1140
     cacagacttt agaggcgcca aaacgagcga tgcaatggga agtttcccct ctctctcgca      1200
     cagcgacaat agcatagaga aaaatctgag ttcttccacc aaaattggac caaacgcttc      1260
     ttcccctcct tctcatgcac acactcacac tagcaaatcc actgatataa gcttagaaag      1320
     ccgctcaaaa catcccgcgc ttgccaatac ggacgcacgc tctataaaag ccaatgctaa      1380
     tgacaatggg gaaattttct cctcacttat acaaattgac gaacgcaagc aagaggaaag      1440
     gccttgcaca actatcaacg ctttttggtc tatttttaaa cccaagccgg acgttactaa      1500
     actaagtcta aagaggaaac ccaccaatcc cactaaaaac actgggaaaa aatgcatctc      1560
     ccctcataaa aagagcgctt atttatgccc ttccgctcag gatgatttaa atttaaattt      1620
     aaaccccaaa tctagcgcca agcccactgt ggtgaattta ccagctgccc gcatcctaag      1680
     ccggcctgca gccaagcggg atttatttaa atcatcatcc tcccgaagcc cagacgagca      1740
     gcctatgagt ttttcggaag tggtcgctgg cacgggttca atttttgcgg caccctgtgt      1800
     cccggcacct ttaacgaaaa ctccaggcaa gcggacaaac gacgatctgg actgctccaa      1860
     ctttaagacg cccaataaaa aattatgcgc gacttccaac tttgtaactc ccagcatttt      1920
     tccgccgctc atcactcccg ttttcaagag caaggcagct caatctgttt acgaggaatc      1980
     caaagccaga aatggacccc ccccgccggc cctcgcctgc agcatcaatg cctctgctcg      2040
     cagcgcacgg cgccacccgg gatcgccccc ctaccccctc ataatacaga tgcagagctg      2100
     cctccatgga aaatcgtgcc ccagagccgt agagcacctc ctatactcgt caatgatgta      2160
     aaggaaattg tacctctact ggaaaagctg aactacacag caggagtctc cagctatact      2220
     actagggcta tagaaggaaa cggggtcagg atacaggcaa aggacatgac cgcctataac      2280
     aaaattaaag aagtcctggt ggccaacgga cttcctttat tcaccaacca gcccaagtcc      2340
     gagagaggct tccgagtcat catcagacat ctccaccact ccacaccatg ctcgtggata      2400
     gtcgaggaac tgctgaagct cggattccaa gcgcgattcg tcagaaatat gacgaatccg      2460
     gctacaggtg gccccatgcg aatgtttgaa gtggagatcg tcatggccaa agacggcagt      2520
     catgacaaaa tactctcact caaacaaatc ggtgggcaaa gggtggacat tgaaaggaaa      2580
     aacaggacac gggagccagt ccagtgctac agatgccaag gcttcaggca tgccaaaaac      2640
     tcttgcatga ggccgccaag atgcatgaaa tgcgctggcg aacacctgtc ttcctgttgc      2700
     accaaaccaa gaaccacccc cgccacctgc gtaaattgct ctgggcagca tattagcgcg      2760
     tacaaaggat gccctgcata taaggcggaa aaacaaaagc tggcggcaaa caacgttgac      2820
     ataaacaaaa taagaacaat caaagacgca acaaataact tttataaacg tcaaggcccc      2880
     cctctacgca acaacacccc tcggctaccg cacagctcag caatcctgag caaatcaatt      2940
     gccgaagctc gccaggaggc agccagaaag tcgatgttaa atccattccg acaaaatata      3000
     aacgacagaa gaccacgatt ctcctcccac gacacggcca ttcagaagcg tctgaataaa      3060
     tggcgccgaa acaccaacaa aatacccaaa aagggtagga tagccttaaa ggataatgca      3120
     aagccacgac cggcacatag gacaagtaac ccagcgcaaa gacatctgga ggactaccag      3180
     gacatgctcc gaagggaaag gagtgaagaa aacgaccagg aatctgagaa gggcaccccc      3240
     aataccaagc aggtcggcaa tgacagccct ccgaccacga gcagagcagc cagagccagc      3300
     tttaagccaa gaatcattga cgataccacg ccatcgccaa aaatctgcaa tcccaactca      3360
     caaaaaggcc tcttggacga ccccacaaca agcttagcta atagagtcga caatttagaa      3420
     aagaaaattg acattttaat ggccttaatc atacaaggaa gaaataacaa tcttgacatg      3480
     gatacatcca attaatctta caactactta tatattcttt aataaatata tccaatagaa      3540
     aagcgcacgt cggtctgctt ttaaaatcct tcaccgtcat caccttcctc gacggagcct      3600
     aatttattgg aaaaataaat caattatatg ttggcacaaa aatgtaaaca cacactcacc      3660
     taaacgcacc cggacgaaca agcctatgac aacgcactcc agctgatctg taagaaacaa      3720
     aaaatatgaa tagatagatc gatatgaaaa ggatatgtgc ggcagaaaca tgatgagcaa      3780
     aaggcgactc gctgcagcaa cttatgcaca acgtcactta cctgaaattt cttgccgtac      3840
     gatctcctgt agtatccctt atcacagctg caatctactt gcaatgctgc actgcaataa      3900
     acgtactaca aaagctgcat acgttttgat caggacacct cgtgcggacg tgctaaaaaa      3960
     aatttccttt ctgctgctct tattgacgct aaaaccttaa aacctacaaa caaaacaatt      4020
     aaataataac aaatcaaata agacaaccaa ataatacact tacctcattg actgcagcta      4080
     aatcgctgac ccacattcag tgcagccgac agcaggagac gggcccgcaa aagcaaaaca      4140
     aaatcgccaa ttttgcgatt ataaacacga aaaattgaca attttgcgat gccgtctccg      4200
     cctcctgatg ccactgcatt gacaagcatc actagcgagg agctgacacc acaccaaaaa      4260
     gctgtaaaat ccgtccacaa attgtatatt ttgcctcagt gtcgtatctg caatgttttt      4320
     ccgataacct gtaaggaaag aaaaattaat aagaaaatta tacaaaatta attaaggacg      4380
     acagaaaata gcaaaccaga caggcaaatt aacagataca aatatgagac tccatcctgc      4440
     tgccgacaca caagtaaatc cttcaactcg acaacaggag acgggccttg caaaagcaaa      4500
     acaaaatcgc caacttttgc gattataaat acaaaaaatt gacaattttg caacgccgtc      4560
     tccacctcct gttgccactg cattaataag gatcaccagc gcggcgtgac gccacactaa      4620
     aaggctgcaa aatccgtcca caaaatgtat acttttcctc agtacaatac tttctaatga      4680
     acttccgcca acctgcaatg aaaagaaaag aaataggtat ataaaacaaa acaaacaaaa      4740
     ggacaaccta aaattagcaa accagacagg catactagta gatgctaata tgcagctcca      4800
     tcctactgac gacaaccacg caactccttt ctccaagacc gcaaatactg aaacaaggaa      4860
     gcacaagcta atactgggaa ttatttattt aaacaaaaat acttatctaa ttgccaattc      4920
     gacgactcca aatccgcggc taaccggcgg cgatggccca taaataaagg gcctcctaat      4980
     taattacaaa atgtacctga aaaacataaa attaacgcaa ctataattaa cgcaattaat      5040
     aaatcaaata aatacaagta taatacttac ctccaagcaa acgtacctga aaaacaaaac      5100
     caaaaaaaaa attaatgcaa taaataaatc aaataaatac aaacataata cttacctcca      5160
     atttacctcc cagccaatct acctgaaaaa cataatctaa tacaatctca aaaacaaata      5220
     acaaatgtaa tacttaccaa attttaattt tgtattcatt tccatgaccc caacgctgca      5280
     actgtcctcg gcaacaattc ctgttccggc ggctccatgc tgccaatcct gacgcactgg      5340
     ccacaagacg cggcgctgct ggcaatctct cgatgaacaa ccgatctaca atttccatga      5400
     cgactcctct gtcacgatga gacagaagac accaccaacg ccagcagctc caaaacaata      5460
     caacaacggc cgcgcggaac ccatcttcag aattccctct tcctgacgac cggcgaacga      5520
     gttctggaat aaacaatgta ttaattgcaa acatctaccg atgagggtag aagagatact      5580
     caccaaacga ctgcggcgcg ggaacaaact aactgcaacg ccggccggac ctatttgttg      5640
     caagtggcgc gcatccagcg cctgcaacat gccccagccc aagtacacaa ctacttacct      5700
     gcaacgtcgc cagaggctcc cagcgaatcg gtgcttccgt ccttctggcg ggggtacctg      5760
     aaaagaaaca aattaaacaa tattaatcct aaatttcaat gttttttgta aaataattta      5820
     aattgttaaa tgtaaacaag ccttgcaata tgttaatgtt accagtccat gctactgtct      5880
     aaaagccaag aatacaaaaa atactaatta taaactaact caccacgccc aacccccaaa      5940
     ctcaccccat gcaatgttaa acctataaat tcaaataatt gtacctatat attgcacata      6000
     ctgtaatcaa aggcaaaata aatcgtggat gcggaacaga atttactctg tctccgtacc      6060
     tccaccagca aagttaaaaa a                                                6081
//
ID   G5_DM       repbase;    DNA;    DRO; 4856 BP.
XX
AC   .
XX
DT   01-APR-2002 (Rel. 7.03, Created)
DT   01-APR-2002 (Rel. 7.03, Last updated, Version 1)
XX
DE   G5_DM is a non-LTR retrotransposon - a consensus sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Interspersed Repeat;
KW   AP endonuclease; DNA binding protein; G5_DM; JOCKEY clad; ORF1;
KW   ORF2; RNase H; reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4856
RA   Kapitonov V.V., Jurka J.;
RT   "G5_DM, an ancient family of non-LTR retrotransposons from the
RT   Jockey clad.";
RL   Repbase Reports 2(3), 2-2 (2002).
XX
CC   [1] (Consensus)
XX
CC   G5_DM belongs to the JOCKEY clad of non-LTR retrotransposons.
CC   Its copies have 3' poly(A) tail and they are flanked by ~10-bp
CC   direct
CC   repeats generated upon integration into genome.
CC   G5_DM forms a separate family of retrotransposons that were
CC   recently
CC   (several million years ago) active in the Drosophila melanogaster
CC   genome.
CC   There are about 15 copies of G5_DM in the genome, they are ~4%
CC   divergent from the consensus sequence and ~10% divergent from
CC   each other. Although the G5 copies have accumulated multiple
CC   mutations,
CC   the consensus sequence contains two ORFs (positions 411-1976 and
CC   1966-4683) that encode the 522-aa G5p1 and 906-aa G5p2 proteins,
CC   correspondingly.
CC   G5p1 is a putative DNA/RNA binding protein:
CC   MDNGPQQKSIDYESMMLIAGAGPKEIREQMKKSWKSETPASATTGISNTYCSSTFTLTSTSSTISSAYIF
CC   TSSLSGNICSTAASTIHKSASVSSIAKPQLATGWHDVSFKSRNGGIKKRAGAVFSPKMAKKVATDMPAKI
CC   SANCFQVLSDDEDMVVGEASSSDDDEPCSSNTALKRAARKAGPKQQLKGAHQTVPAAPKSSRHSKVPRMM
CC   FPNVVNFTAFRSELDALVGDSYTIKVLNSGDCAVQCNSPDSYRLVARHFLDKGSLFHHHQLPEDRPYKIV
CC   MRNIHHGVPSEDIIATLQNEGHNVVRIYTPRNKATSLPLNMRFIDLKKAENNNQIKGISVVCRHRVIWEK
CC   PRKQSEPIQCHRCQGYGHTKAYCSRHYICRECGENHPTAECKLEQDEARFCFHCGGPHAANFKGCKKYLL
CC   EASNRKNQRKVNEPSGSGPARGPHQPCPPAHMSGKPSFANFVRGSQPVAKPAVIVPHASANLESKLEQLF
CC   IRLDRMMSLVETLMQLLLQTRTFPSAAQNGSS
CC   G5p2 is composed of the endonuclease, reverse transcriptase and
CC   RNase H
CC   domains:
CC   MGPLKVAAWNANGASSKTNEILAFIELHEIDILLLSETHFVSRSTFRVPGFTLHTANHPDDSKRGGAAIL
CC   IRSLISHLPFSTLSENHIQTAVIQLTASRGTFNIASVYCPPNLRWTEADVELIIAQFGTKFLAAGDWNAK
CC   HRWWGNYRMCTRGRVLFSALAGEGIDIVATGEATCYPFRASATPSAIDFGISKGFRQQEINVQLLTELSS
CC   DHLPLLFELDEDAQLFKGVTKMLSPTANTVAFKEHIEATVDLNIPIDTCNSLEAYVDYLAATIAEAARRA
CC   TPPPHQARHTTARRAPILSLEARELLSHKRRLRRRYIATGDPSIKQLYSSTTNKLHRLLARTRRENLDTL
CC   LEGTGPDNNSHFSLWRLTRGIKRQPLFQSPVQSHSGLWLKTDDEKARAFASHLTSTFMPFNLTDDSNRVA
CC   IINFLDTPTAPARPIRHTTPQEVIMQLKALQIKKTPGYDGIDNRAAKSLPRKGVLALVKIFNAMLRLGHF
CC   PRQWKRARIIMIPKAGKPPTKIDAYRPISLLSTFFKIFERILLARLMELPQVVNHIPRHQFGFRKSHGCP
CC   EQIHRLVNQVTHGFEHKLYTVGVFLDVKQAFDRVWHEGLLYKMKALLPAPYYAILRSFISHRTFDVAVRD
CC   ARSSLEEIHAGVPQGSVLGPFLYTLYTADLPSPANNTEVSPDQLLLATYADDTAMLASHPVLQTASNAVQ
CC   EWLHAVEKWTAKWNVAINSSKSACVTFTLRPGTCTDLTFDGNPINNVTSHCYLGVHLDRRLTWRAHITSV
CC   KFKSLAKLKKLDWLFHSSKLQMSSKALLIKAILAPTWSYAIQVWGTAAKSQLNRLRVVQSRAARHASGLP
CC   WYVTNQVIERDLKVTPLGDQINFHSSRYADRLMVHPNRLANILANPISLRRLKRVHPTDLPTRRIV.
XX
SQ   Sequence 4856 BP; 1320 A; 1338 C; 1088 G; 1110 T; 0 other;
     acttcgtttc gcagttgcga taagccggac gcgtttttgg tgcagtgaca cagtttggtt        60
     taacaaattt acggacaagt ccacaactgt ggcacgaagt gtagtgatcg agaacataat       120
     caaattatgt gttggcaagt gaaagtgtgg cgacttttgc tagccagcgt cgcttttctt       180
     tacttggtga ggctggctca agactcactg aaaaacttca cgaggcgatc agctgtgagt       240
     gctttaagct gtaagagctt taagccctgg ctgtttcgtg tccacggtac actactactt       300
     tcaaaccgcg atcttcaaga tctatctggg tcgtgtctta gatactctgc cgctaaaact       360
     ttaagcttct agctggttcg agtcgtcgct aagcattttt ctttttgaaa atggataacg       420
     gtccacagca aaaatctatc gactacgagt cgatgatgct aattgctggc gcgggcccaa       480
     aagagatacg ggagcaaatg aaaaagagct ggaaaagtga aactccagcc tctgctacta       540
     ccggtatttc aaacacctac tgcagttcga ccttcacact gacctccacc agttcgacta       600
     tctcgtctgc gtacatcttc acctcctcct tgagcggcaa catatgctct actgctgcca       660
     gtacaattca caaaagtgca tctgtcagct caatcgcgaa gccacaactt gccaccggct       720
     ggcacgacgt ctcctttaaa tcaagaaatg gtggaatcaa aaagagagca ggcgcagtct       780
     tctcccctaa aatggcaaaa aaggttgcaa ctgatatgcc ggcaaaaatc tctgccaatt       840
     gcttccaagt cctaagcgac gatgaagata tggtcgtggg agaggcatct tcgagtgacg       900
     acgacgagcc atgctcctcg aataccgccc tcaaacgtgc cgcaaggaaa gcaggaccaa       960
     aacaacagct gaaaggtgct caccaaactg taccagccgc cccgaaatca agccgtcact      1020
     ctaaggtgcc tagaatgatg tttcccaatg tggttaactt cacagcattt cgcagcgagc      1080
     tggacgccct tgtgggcgac tcctatacaa ttaaggtcct aaattcggga gactgcgctg      1140
     ttcagtgcaa ctcccctgat agctacaggc tggtggcccg gcactttctc gacaaaggat      1200
     ctctttttca tcaccatcag ctaccggagg accgacccta caaaatagtc atgcgcaaca      1260
     ttcaccacgg agtcccatcg gaggatatca tcgcaaccct ccagaacgaa ggacataacg      1320
     ttgtacggat ttatacccct cgcaacaagg caacctctct tcctcttaat atgaggttca      1380
     ttgacctcaa aaaggcggag aacaacaacc aaataaaggg catatctgtt gtctgcaggc      1440
     acagggtaat atgggagaaa ccccgtaagc aatcggagcc gattcaatgc cacaggtgcc      1500
     aaggctatgg tcataccaag gcatattgtt ctcggcacta catatgcaga gaatgcggag      1560
     aaaatcaccc cactgcagag tgcaagctgg aacaggacga ggccagattc tgctttcact      1620
     gtggtggccc ccatgcagcc aactttaaag gttgcaaaaa gtacctgcta gaggcttcta      1680
     accgcaaaaa ccaacggaag gtcaatgaac cctctggttc tggtcctgca agaggaccac      1740
     accaaccctg tccaccagcc cacatgtctg gaaagccttc atttgcaaat tttgtcagag      1800
     gaagtcagcc cgtcgccaag cctgccgtta ttgtccccca tgcaagcgct aaccttgagt      1860
     ccaagctgga gcagctgttt attaggcttg acaggatgat gtcactagtt gaaacgctaa      1920
     tgcaactgct cctgcaaact cgcaccttcc cttctgctgc tcaaaatggg tcctcttaag      1980
     gtagcagctt ggaatgccaa tggggcctcc tcgaagacca atgagattct cgccttcatc      2040
     gagcttcacg aaatcgacat cctcctgctg tcggaaaccc atttcgtttc ccggtccacc      2100
     ttcagagttc ctggctttac cctccacact gccaaccacc cggatgacag caaacgcgga      2160
     ggtgcggcga tccttatcag atcactcatc tcccacctac ccttctccac cctgtcggaa      2220
     aatcacatcc agacagcagt tatccagctg acggcaagca ggggtacttt taacattgcc      2280
     tcagtatact gccctcctaa tctcaggtgg acggaggctg acgtcgagct gatcatcgct      2340
     caatttggca caaagttcct tgcggcaggt gactggaacg caaagcacag atggtgggga      2400
     aactacagga tgtgcactag aggcagggtg ctgttctctg ctctggcggg cgaaggtatc      2460
     gacatcgttg caactggaga agctacttgc tatccctttc gagcaagtgc cactccaagt      2520
     gccatcgatt tcgggatctc caaaggattc agacagcaag aaatcaacgt gcaactactg      2580
     acagaactgt catctgacca tctccccctg ctgtttgagc tggatgaaga cgcccagcta      2640
     ttcaaaggtg tcacaaaaat gctgtcacct actgcaaata ctgtggcctt caaggagcac      2700
     attgaggcca cagtagatct caacatcccc atagacacct gcaatagtct ggaagcgtat      2760
     gtagattacc tcgcagccac aatcgcggaa gcagcacgga gggccacacc tcccccacat      2820
     caagctcgtc acacgaccgc aaggagggct cccatcttga gcttggaagc cagggagctg      2880
     ctctcccaca aaaggcgcct caggagacgg tacatcgcaa caggagatcc tagcattaag      2940
     cagctatact ctagcaccac taacaaactg caccgtttgc tagccaggac gcgacgagaa      3000
     aatctggata ccctgctgga gggtactggc ccagataaca acagccattt ttcgttatgg      3060
     aggctcacaa gaggtatcaa gagacagccg ttgtttcaat ctcctgtcca gagtcacagt      3120
     ggcctctggc ttaagacgga cgatgaaaaa gcgagggcat ttgcttcgca cctgacctcc      3180
     accttcatgc ccttcaacct aacagacgac tcaaatcgcg tagccatcat taattttctg      3240
     gacactccga ctgcaccggc tcgccccatt aggcatacca caccgcagga agtcataatg      3300
     cagctgaagg cgctgcaaat caagaaaacc cctggttacg atggcattga caaccgtgct      3360
     gcgaagtctc tgccacgcaa aggagtccta gccttagtaa aaatatttaa tgccatgcta      3420
     aggctagggc actttccaag gcaatggaag cgtgcacgta tcatcatgat acctaaagcc      3480
     ggaaagccgc caacgaagat cgatgcatat cgcccaatca gcttgctatc aactttcttc      3540
     aagatttttg agagaatact cctagcccgc ctgatggaac tgccgcaagt agtgaaccac      3600
     atacctcgac accaatttgg cttcaggaag tcccacggct gccctgaaca aatacatcga      3660
     ctggtaaacc aggtgacgca tggcttcgag cacaaactct acacggtcgg cgtctttcta      3720
     gacgtgaagc aagcgtttga cagggtgtgg catgagggcc ttctatacaa gatgaaagct      3780
     ctccttcctg ctccctacta tgccatcctg agatcgttca tctctcatcg gactttcgac      3840
     gttgcagtgc gtgatgctcg gtccagcctg gaagagattc acgcaggagt tccacaggga      3900
     agtgttcttg ggcccttcct gtacaccctg tacactgccg acctgccatc tcccgccaac      3960
     aacaccgaag tctccccgga tcagctgctc ctggccactt atgccgatga caccgccatg      4020
     ctggcgtctc atcctgtact gcaaactgcc tccaacgcag tccaggaatg gctgcatgca      4080
     gtcgaaaaat ggactgccaa atggaatgtg gccattaact cctcgaagtc agcctgtgta      4140
     acttttaccc tgcggcccgg aacttgcaca gatctgactt ttgatggaaa ccccatcaac      4200
     aatgtcacat cgcactgcta cctaggagtt catctagatc ggagactgac ctggagggcc      4260
     cacatcacgt cggtcaaatt caagtcactg gcgaagctaa aaaagctcga ctggctcttc      4320
     cactccagta aactacaaat gagctctaag gctcttttaa tcaaagccat acttgctcca      4380
     acgtggagtt atgccatcca ggtgtgggga actgccgcca aatcccagct caataggctc      4440
     cgtgtggtcc agtcgagagc tgcacgtcac gcatctgggc tcccctggta cgtgacgaac      4500
     caggtaatcg aaagagatct gaaagttacc cctcttgggg atcagattaa ttttcacagc      4560
     agccgttatg ccgacaggct tatggtccac ccgaaccgac tagcaaatat cctagctaat      4620
     cccatctccc tccgaaggct gaagagggta caccccaccg atctccctac ccggaggata      4680
     gtataaaata ttacacatta agtaattaat aactagaaaa atttttcctt ttctacttaa      4740
     taattaagaa accacttggt ctcatataca tttatacaca caataggtta agttcagagg      4800
     aattgactga acgattcctt ttggatccaa aataaataga atgattattt aaaaaa          4856
//
ID   TART_B1     repbase;    DNA;    DRO; 10654 BP.
XX
AC   U14101;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Drosophila melanogaster TART-B1 transposon.
XX
KW   Repetitive sequence; TARTB1; TART_B1; transposon.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-10654
RA   Sheen M.F., Levis W.R.;
RT   "Transposition of the LINE-like retrotransposon TART to
RT   Drosophila chromosome termini.";
RL   Proc. Natl. Acad. Sci. U.S.A 91(26), 12510-12514 (1994).
XX
RN   [2]
RP   1-10654
RA   Levis W.R.;
RT   "TART_B1.";
RL   Direct Submission to Genbank (29-AUG-1994)Robert W. Levis, Fred
RL   Hutchinson Cancer Research Center, Division of Basic Sciences,
RL   1124 Columbia St., Seattle, WA 98104, USA.
XX
DR   GenBank; U14101; Positions       1   10654.
XX
SQ   Sequence 10654 BP; 3669 A; 2717 C; 2036 G; 2232 T; 0 other;
     gatccggccg gatggcagct cgacgacggt agcaggccac catgcccgcc agcccgcagc        60
     taggatagca gcaacatcag cgtcttatta acgcgaacgg cggcactggc ccttagctga       120
     ccagctgcaa caacatcagc gacgcagtct ccaccagcag caacaacagc agcggcgctt       180
     gcgacagcag cagcagggaa tggttctgcc gcagtcgcct attgctgcct ataaagagca       240
     ttccttgcca attggctttc tgtacgacga cgatgatcct gcggacaaat ccacctttcc       300
     ggacgcctga gtattatggc gagcctgctg atcattgttt ctccgactcc ttacttgacc       360
     actggacaat catacaatca ccggcttttc acatctggaa gaaagaaacc tggattagta       420
     tttgcccttc agatttgtat gaaactgcat ttctggccaa ccggagtgtt tcctgcagac       480
     gacgctggac tgcgacgcac ttttttctac caacacagat gggacgcttg catcagatct       540
     gacgggccag actggccgat gcctggtaca cgatggcatc tccgcggcgg cgagatgtgc       600
     agcgacgctg aaagcaataa taattctttt actttgcagt atcaaaaatg agaagccaca       660
     tcacaattta catcagcaaa aattacacgt gatatctttt tcttttgcct aggagtagtg       720
     agacctgcta ccaaaatgac cagtaatacc ggctaacgga agcgagatat cgataatcat       780
     tctggcggta aaatagccag aacatcgata accagctgtg cattttccct tcgatttatc       840
     gaagtcaaat agcccgccta ggctatcgga ccggatcggc aagtcagtag tgattaaaaa       900
     tccggcagag gcgcctgtgc agcagctacc caaagtgaac acgacgaaac gcaacaacaa       960
     aatggacgga cataatggag atcaaagtga aggatgggca acagtgctat ctatctcctc      1020
     ggatgatagt aactccttgt cgtcgccgcc gtctataata gtttcatcgc tggacaccac      1080
     gccaacttcg cacgaaacca ccatagtaag aagaagccta tatcaaacaa atgctgacat      1140
     gaaatcttac gattttgaaa atattgtatt aaatgagaat aaaaatacca tattgccaga      1200
     ccctttattt gttgataaat gcgggagtac tgctaatacc acagaagcca atgaaaaaaa      1260
     gcctgccaat agccccttcc ccatttccat tagcaagaat tttagcactt cctcgccact      1320
     aacacatgta gacacgccta cacaagaaga tgacgccagt gcgttcaata cattgaaagc      1380
     agctaaaaca gctagaataa tttttcccac acacacacat ataaagccca ccaaaccctc      1440
     gcccccctcc aaagaattaa gcacaaactc agcactaaaa actctcagct acacagacaa      1500
     aataacagga acacagaaaa atctacccga caaaacacat gtagacacac ctacacaaga      1560
     tgacgacatt aatgcaacca aagcatcaaa aaccgctaaa ataatttcta cacagacaca      1620
     cctaggtgaa accaagccaa tacagcccgc caaagacccc tcaccccgca cccaaaagcc      1680
     tattgcacac aaagctgacg agacacttac ccacacagac aaactcacag catcacaaaa      1740
     cctcgttccc gccaaaacac atataaacac acccacacaa tataacgaca ctaatgcaac      1800
     caatgcatta aaaaccgcta aaataaattt ctcttcacac tcacaccaaa gtgaaatcaa      1860
     gccaacacag tccgccaaaa acatttcacc cctcacacaa aagcaattca caagcgaatc      1920
     agccgggaca cacacccata cagacaaaca caaaaacaca gcatcacaaa atctcttttc      1980
     cgccaaaaca cacattaact cacccacaca acataactac actagtgcag ccacagcatc      2040
     aaaaaccgct aaattaattc tctccccaca ctcacaccta agtgaaacca agccaacaca      2100
     gcccgcttta agcccctcgc ccctctccca gaagcaaata acaagcatag cagccaagac      2160
     actcacccac acaaacaaac acacagcatc acaaaacttt attcccgcca aaacacatat      2220
     aaacataccc acacaatata acgacaccaa tgcaaccaaa gcattaaaaa ccgcaaaagc      2280
     agcttctccc tcccacacat actcacgtca gacaaaacca ataaagtccg ccataaacgc      2340
     attgcatccc gcccaagaca caaacccaag cccagcaatc agtgctgtca cttacacaga      2400
     caaacccaca gctactcaga atatttttcc tgtcaaaact tttgcagagc tggttaggga      2460
     aaatgcaaaa cgcttaccaa ctccaatgca gaattcccat caagctaaaa atgactctgc      2520
     cgctctcgga cgccccccga ctgcagctag aaaaaatcta aataaaacac tgatttctcc      2580
     taaaactcct gggaagcgcc gtggggactg tcttgatgaa ggcctactac aaacctctaa      2640
     caaaaaggtt agaatacgcg atgacttctc tgacgatgat cttggggtca caaatctact      2700
     ctctgaaaca cccttattca aaagcaaagc agctatcaag atccggcaag actcgagaag      2760
     agattccctg cagaagtcag ccgaaatgga cacagctcca gcaattagtc cctcaaacac      2820
     agcagccgat tccgacctac cgccctggaa aactgttcca gctagcagaa aaccaccatc      2880
     aatcttcttg tccaatatac agcagattat cccgctaata gaaaaactaa actataaagc      2940
     cggggtaaat agctttacca ccaaatctga acttggcaac aatattagaa tccaggctaa      3000
     aacgatggac gcccacaatg caattcagaa tgttctcctt gaggcaaata ttcccctaca      3060
     ctcccaccag ccaaagagtg caaagggctt ccaaattgta attaggcacc tccaccagtc      3120
     aaccccgacc aaatggattg aaagccaact tcaagacatc ggtatagcta caaaatttat      3180
     cagggcaatg cagtttaggg acacgagaaa tcctatgcgc attcatgagg ttgaagttgt      3240
     acccaaggct gacggcagcc atctcaaggt cctgctacta aaatcccttg gaggtcaaac      3300
     ggtcaaggtt gaaaggaaac gggtatcgaa ggatcccaca caatgtcatc gctgccaatg      3360
     ttttgggcac acaaaaaatt attgtagaaa cccgtttaaa tgtatgaaat gtggccagct      3420
     gcacgccacg gtttcatgca ctaaacccaa aaaccttccg gctacttgtg caaactgcaa      3480
     tggaagccac gtaagcagct ataaaggatg tcccgctttc caagaagcaa agcaaagact      3540
     atctatcaac aaaattcaat ccctacactc acaacccacg caccttcaga ccccccgcaa      3600
     taaacatccc tacccaaaac ccacccacct tcagacgccc cgcaataagc agccctacac      3660
     acaccccctc cctcgcacat cagtaaacaa cacaaaacta cctgccaaaa gaatccaagg      3720
     aaagaagata tcgcaaagga atctatctat aaacaaacgc ttacacagaa tgaaaaaacc      3780
     gaggaaggag acaagcccgc cgacaactag caaaaaggtc ttggcctctc tagaagaaag      3840
     cagaaaaaac ccaaatagcg tcctaaaccc ggccaacacc catctcactc atttccgccc      3900
     acccccttta gcacaaaata ttcctaatga cgaacctaag gagctgagtg gggagcaata      3960
     ccttctaaat cgcattgaag ggatggaaaa gaagatcaac aaccttcttg aaatcgtcac      4020
     ccgcctacta agacaaggaa aagactgtcc aaagtctcca aaaaatcctt tccgagatcc      4080
     aatcttcgtg taaatgctct ttctagtaac atcagaaagt gacgtttcct atgactcggg      4140
     ctgacaacag ggacatcctt aaaatcgctt tctggaatgc tggtgggatt aacaataaaa      4200
     tagatgagct taagctgttc attctaaata ttgatgccca cataatcata gtcaccgaaa      4260
     ctagactaga caacaattct accaaactag agctgccagg atatttcaca tacttagccc      4320
     aaaatcctgt ctctagcaag agaggagggg tcgctactat agtaaacagc agtatccgac      4380
     acatggccct aaaaccgatc gaaaaagaat gcatacaaag cgccccaata gtcctgctgc      4440
     ctgaaaacaa cagacgcagc gaaatgatag taatagcatc tgtctactgt ccgccctcgc      4500
     taaggtggtt gccccaccac tttactgacg ttctcaattt tgcagagaaa actttaggag      4560
     ggcagaccaa gtttatccta tgtggcgact ggaatgcaaa acatagacaa tggggttgta      4620
     cacgcgcctg ccaacgtggc accgcactct acgaagcagt ccaagccgac tccactgcag      4680
     agatcattgc cactggctgt gctacacatt tcccacatga cacaagaaaa aacccgtcag      4740
     caatagattt ctccatttgc aaagggcttg gcaggtttga aaaaagaatt tcttcagggg      4800
     cggatctatc ctcagaccat cttcccatct tgttagagat aaacctagac acaaacaccc      4860
     tcttcttgca aaaacaaaac aacaatatac tcaagaaaaa tacaaacatc gagctgttta      4920
     agaaagttct agaaagaaag atactattaa acactgagat aagggtagca gaagatataa      4980
     atgacgccat aagcaccttt atgaaaaaca tcaaggactc ggctgcggaa tcaactccct      5040
     ccccaagaat acgtgacaac cccagaagaa gacataggca agccaacaga aacagtcata      5100
     ccctcgcact agacgaaaac acaagcagac tgcttgagga aaaacgcata ttaagtagag      5160
     ttttcaaagc taccaaaaat tacgaggaca aagctaaact aaaggcagct gaaaaccgac      5220
     taaaaaaagc gataaaaata ttgagagaaa acagaatcaa tgagcaagtt gaaggaatag      5280
     atacaagtaa cccggacaga atgagaaaaa tgtggaaact gctagatgaa gggaaaagga      5340
     caaatcagcc taattttccc ctcaaattag aaacccaaaa aggacccaaa tggacaaaaa      5400
     cgattaagga gacaacagaa acatttgtct cccacttgga aggaagattt aagccaaaca      5460
     ataatgtacc tgattaccac atagatagag tcaatactgg actaagaata attaaggaaa      5520
     gcatgctaac tgaacgacat aatctgaaca aaaaccccca taaccaacct attactctaa      5580
     aggaattaaa tgacgaaata aaaaacttaa agaatagtaa agcaccggga aaagacctta      5640
     taacaaacca gctaataaaa accctaccga ctaaagctac cctttacctt atcctaatct      5700
     ataactccat acttagacta ggatactacc cagaagcctg gaaacatgcg caggtaaaaa      5760
     tgattctcaa gccagggaaa agtgcaaacg agccaaggtc atataggccg attagcctac      5820
     tctcgggact ctcaaaaatc tttgaaagac tactcttaaa aagacttttt aaggtagatt      5880
     tattcaaaaa agctattcct ctgcaccaat ttggctttag aaaagaacac ggatcggagc      5940
     agcaaatagc cagggtcacc cagttcattc ttgaggcctt cgagagaaag gaatactgct      6000
     ccgcggtctt ccttgacatc tctgaggctt tcgacagggt atggcacgaa ggccttttac      6060
     ttaaattagc taagatccta ccttacaact tgtacattat actggagagc tacctaacaa      6120
     atagaacgtt cgaagttaaa gaccaagctg gagagacttc gagaacagga caaattggtg      6180
     ctggtgtgcc tcaaggaagc aatcttggac cactactcta ctctatcttc tcctcagaca      6240
     tgccccttcc atatatctac cgcccctcac caacagaaag aatcatgctc tcaacatacg      6300
     cagacgacac tatagtcctc agctcagaca cactagcaac tgccgctaca agaaacaacg      6360
     aaaactacct caagtcattc tcggactggg cggacaaatg gggtatatca gtaaacgctg      6420
     ctaaaaccgg acatgtcatt tttacattaa aaaacgactt acctacaagt ctaaggacta      6480
     tgaagatcaa gggtcaagta ataaagattg aaagcaaaca atcatacctt ggcgtaatcc      6540
     ttgacagcaa gctaaccctc agctcccacg tcacaaagct gatgggcaaa tacactacag      6600
     cctacagaaa aatgacatgg attctaaaca gaagaagcaa actccctacc aagactaaaa      6660
     tgctgatcct taagtcagtc ctttcaccaa tatggcagta tgccatagca gcttggggtc      6720
     cccttgtgac ggatgcacag ataagacgga tccaagtcga ggaaaatagg aaaatgagag      6780
     acatatgcag agcgggtaga tacacgagca accaaactat aagggaccgc tatggaatca      6840
     aaacagtaga agaattctat caacaggcac tccacaggtt ctcagaaaca ataaaatctc      6900
     acccaaatat agctgtacgc aggatattca caaggcacta tatcccgaac agactagaaa      6960
     gaagcaggca gaggtacttg aaaatgacaa atgaacacat cacgcaaaaa cagactggac      7020
     aaacactctc acctaaactc ctaaaaatcc ctgatctaaa tgactgcaga acccttaaaa      7080
     agcggaatga aagagataaa ataaggcaaa cccatctaat tgaactcccc accctgctga      7140
     gactagagga agaagaggaa gagcttagaa gaataaaaaa acaggaagag agggaaagaa      7200
     gggaaaagga aacccaaaag tggcctccag acagatggtg tgaattagaa attaacctat      7260
     ataataagca atatagaagg ggcgatctaa ccaggcagga aatcatacaa aaatttagag      7320
     gacaaccact aaatgtacag aggataattt tacccgacta taaaggagac caggaacaca      7380
     attaaaagta aatcatggga aagcagggga aaaaaaacag aagtaacaaa atggcggaag      7440
     gggtggcaaa atatatataa aaataagaaa agatagaaat aaaaaggcta aaggctcact      7500
     tacaggttaa ttcaaaaggg aaacgtgctt acatatctaa tggtaaaaac taacttataa      7560
     cacctactgg atgacatagt gaggatgcca caggttgcgc acttgaatca cgctttcctg      7620
     gcgagattgt taaggcatca ccgggatccc gtctctcttt cctaactgga ggactcatgc      7680
     ctgaaatctt ttccgcttca ccggcacctg atggccatat ctgctactgc gccttgcgtc      7740
     cacggacgct ccttcctgaa agaaagagaa tttgttttag ttttcctttc tcttcttaaa      7800
     aatataacaa aaacagcagc agtagccgac caacaacata cttagcttac caaggcagca      7860
     gcaatgatac caacagaagc cctacagtgt gctgaacaat atgccgccca cgcccaccac      7920
     ttctggaact caggaatggg gggtacggaa tgccggaaac tggaggattc gcctcaaatg      7980
     ttacgcttac atctttgagc aaatcgcctg cctcctcgtc taacggcccg gcgtcttggt      8040
     acgcccagaa gtagcagcgg tagcaggatt agcagcctcc acagagatat gttcatccca      8100
     gcatcagtcc agttggcatt gtgatgccgc cgtagcgtac gccctcagag acccgactgg      8160
     aatcccagga caagagacgg cagcacgcct gggcttaggc gcgggacaac atgcagagat      8220
     tcgtcaatga gaatggcggc actggaatca cctttcagct gagcgggata atgagtcggc      8280
     aacgcaccgc actatcagca gcaataacaa catcggcaga tgacctggaa gaaaggaaaa      8340
     aacatgtatc agtcttttct tttctttttt tttcccatta gcatgcgttt ttaaattcca      8400
     ttcctgaaaa ccggcgtttt cctgtaaaag acactggacg gcggcgtttg ttttaaatgc      8460
     aaagattgga tgcttgcatc agggctgacg tccttgaata gccgatgcct tgtaattgcc      8520
     tgcatagccg cggaggtcct gatgacggat gctggcctgt atttggccac cactccgatg      8580
     ccatgacagc agcaacagca gcggtttttg caaatgagag ggatcaggag gcggcaacac      8640
     attcacccgt agcagcaaca acaagcagtg gtagcatcag cagggagtct tctcgccaca      8700
     atagccattt ggaaatttct cgacgacccg acttcctgct tggcccatgg tcaatcacac      8760
     tggaccagtt aacagcggcg ttttaccctg gaagaaagaa aacttgtatt attcattccc      8820
     ttttctctca cagttgggta tttaagtgca ttcctggcca acctagcgtg tctcctggca      8880
     atgacgtcgg actcaacgca tgcttccctt ccgacacagt aaggatgttc gcatctgggc      8940
     tgacgggcca ggccggtccg ttgccataca tgctagcgtt tccgcggcgg cgtagtgaac      9000
     atcaaaccgt ataatggcga agacgacgat gatccggccg gatggcagct cgacgacggt      9060
     agcaggccac catgcccgcc agcccgcagc taggatagca gcaacatcag cgtcttatta      9120
     acgcgaacgg cggcactggc ccttagctga ccagctgcaa caacatcagc gacgcagtct      9180
     ccaccagcag caacaacagc agcggcgctt gcgacagcag cagcagggaa tggttctgcc      9240
     gcagtcgcct attgctgcct ataaagagca ttccttgcca attggctttc tgtacgacga      9300
     cgatgatcct gcggacaaat ccacctttcc ggacgcctga gtattatggc gagcctgctg      9360
     atcattgttt ctccgactcc ttacttgacc actggacaat catacaatca ccggcttttc      9420
     acatctggaa gaaagaaacc tggattagta tttgcccttc agatttgtat gaaactgcat      9480
     ttctggccaa ccggagtgtt tcctgcagac gacgctggac tgcgacgcac ttttttctac      9540
     caacacagat gggacgcttg catcagatct gacgggccag actggccgat gcctggtaca      9600
     cgatggcatc tccgcggcgg cgagatgtgc agcgacgctg aaagcaataa taattctttt      9660
     actttgcagt atcaaaaatg agaagccaca tcacaattta catcagcaaa aattacacgt      9720
     gatatctttt tcttttgcct aggagtagtg agacctgcta ccaaaatgac cagtaatacc      9780
     ggctaacgga agcgagatat cgataatcat tctggcggta aaatagccag aacatcgata      9840
     accagctgtg cattttccct tcgatttatc gaagtcaaat agcccgccta ggctatcgga      9900
     ccggatcggc aagtcagtag tgattaaaaa tccggcagag gcgcctgtgc agcagctacc      9960
     caaagtgaac acgacgaaac gcaacaacaa aatggacgga cataatggag atcaaagtga     10020
     aggatgggca acagtgctat ctatctcctc ggatgatagt aactccttgt cgtcgctgca     10080
     tatataaaat aataaatttc ttaaaataat ttcatcgctg gattcctgcg ccaccataaa     10140
     ttacttatag aatacactta acactgtacc cactaatgct aaaaattttc ttatacaatt     10200
     ttactttaaa gctaaaacta cttaaactat ggcgcgtaaa acggccgtca aaaatatcca     10260
     aaaattgtac ttgccataaa caaattctaa cataatgtaa atcctaaatc gtaaaatcat     10320
     ggcgaacata accgccgcca agcaaatcaa aaaatgttcc tagaaattgt aaatcttaaa     10380
     cctacttctc taactaaagc gcgcacaact gccgctgatc cgaaattgta aaatgccata     10440
     aattgtaact atatatttta taaaaaaaat cagagtacaa taaaatgaca gcgccgaaag     10500
     gcactgaaaa tatttaaaaa aaaaaaaaac tgccgctgat ccgaaattgt aaaatgccat     10560
     aaattgtaac tatatatttt ataaaaaaaa tcagagtaca ataaaatgac agcgccgaaa     10620
     ggcactgaaa atatttaaaa aaaaaaaaaa aaaa                                 10654
//
ID   QUASIMODO2-LTR_DM repbase;    DNA;    DRO; 498 BP.
XX
AC   .
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   09-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Drosophila melanogaster retroviral like element QUASIMODO2, LTR
DE   consensus.
XX
KW   LTR Retrotransposon; Interspersed Repeat; pol domain;
KW   endogeneous retrovirus; MCCLINTOCK; QUASIMODO2-LTR_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RA   Kaminker S.J., Bergman M.C., Kronmiller B., Carlson J.,
RA   Svirskas R., Patel S., Frise E., Wheeler A.D., Lewis E.S.,
RA   Rubin M.G., Ashburner M., Celniker E.S.;
RT   "The transposable elements of the Drosophila melanogaster
RT   euchromatin: a genomics perspective.";
RL   Genome Biol. 3 (12), RESEARCH0084 (2002).
XX
RN   [2]
RA   Gentles A., Jurka J.;
RT   "Drosophila retroviral-like element QUASIMODO2.";
RL   Direct Submission to Repbase Update (DEC-2004).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 498 BP; 151 A; 107 C; 69 G; 171 T; 0 other;
     agtgacgtat tcacgccaac tcatcacgct cagttaattg aatattcgcg ccacccaaac        60
     tgggccgctc ttgtaaacgg attcccaagc tctcctcaac gtaaacatcc aagaacatca       120
     catgatttta ccgtttaaag ctattttctg cgttatctgc gtgtcgatcg ttattacttc       180
     acttcacaac cttgggagat attccgtttt tttcctattc tttatttctg taacccatag       240
     aggcccctcc tcaattctca ctcacatttg taatcagtct taagttgaaa gttagaccgt       300
     aaagttcaat aagtcttaaa ccgatattta ataaaaaaca aaaccgaatt tattcagtgt       360
     ttaatttatt tcggagttga tcctagttta aatacggatc atttgttcga cttaaaaaaa       420
     taaaaactat ttaactttca gcgttgatct tagtttaaat acggatcatt tgttcggctc       480
     aattaaaaac tatttaac                                                     498
//
ID   QUASIMODO2-I_DM repbase;    DNA;    DRO; 5500 BP.
XX
AC   .
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   09-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Drosophila melanogaster retroviral like element QUASIMODO2,
DE   internal consensus.
XX
KW   LTR Retrotransposon; Interspersed Repeat; pol domain;
KW   endogeneous retrovirus; MCCLINTOCK; QUASIMODO2-I_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RA   Kaminker S.J., Bergman M.C., Kronmiller B., Carlson J.,
RA   Svirskas R., Patel S., Frise E., Wheeler A.D., Lewis E.S.,
RA   Rubin M.G., Ashburner M., Celniker E.S.;
RT   "The transposable elements of the Drosophila melanogaster
RT   euchromatin: a genomics perspective.";
RL   Genome Biol. 3 (12), RESEARCH0084 (2002).
XX
RN   [2]
RA   Gentles A., Jurka J.;
RT   "Drosophila retroviral-like element QUASIMODO2.";
RL   Direct Submission to Repbase Update (DEC-2004).
XX
CC   [2] (Consensus)
XX
CC   There are 6 nearly perfect copies in the genome - 99.9%
CC   similarity to consensus.
XX
SQ   Sequence 5500 BP; 2267 A; 1147 C; 821 G; 1265 T; 0 other;
     tggcgcagtc ggtaggataa ctcaaagatt gcttgatgcg aaaatataaa atttttaatt        60
     cctgtaatct gtgatatccg ccaaagaact tacgtagtgt tactgtgaaa gtgaagtgtt       120
     gaccattaat acgcctacac ttaaaagaac agtgagacac atctgtttaa acaacagtga       180
     acttccaaca tttaccggag ctataaatcc agaatttttt tttggttact ccgaacaagt       240
     gaattgctgg aaaataaaaa ataaaaaaaa aagaacctaa aactaaatat attaaggaat       300
     taccaaataa gtgaaaaaat taaaatctaa gtgaaagaaa acataaggaa gtaaacccaa       360
     atcaatcagt taaaaaaaaa aatctctaat gcgaactatt aaataagtgc atataaaaca       420
     aaactatata cacttaaaga aaatatatat ctaaataaac tctatctaag ctcaacggaa       480
     aataacaaaa gaaataaatc ttaacgtgtt atcaagagag gagagttata gacttcaaac       540
     gtaacataag tgaaaaatca ataggagtga ataaaattta aattaagaca aataaaaaac       600
     tgaagatata aagtttgaat aaattaaaaa taaactaaaa ctatacaata caaaaataaa       660
     aataacaata ataaaattat gaaataaccg ctactcacga aacatcagca actataaaca       720
     tttaaaaaca aaaaaaaaag aaaccaacaa ttttgtactc taataaaaaa aaaaaaaaaa       780
     atggcagtag cagcaccaag cccaataata ctgtccgact cgaacatgat tcaagttgaa       840
     cgacaaataa atggagtcga acaattcaac ggggacccac agaccctgta tacgttcatc       900
     agccgcatcg atttcatcct ggcactatat caaacgaccg acgaacggca gaagctcacc       960
     atcttcggac acattgagcg caacatcgcg ggagaggtca tccgcacact aggagttacg      1020
     aacctcacca cctggacgga actcaggact catctgatcc taaactacaa accccagaga      1080
     ccaaatcatc tactattgga ggacttccgg aatacccaat tccgaggtaa cgttcgtgaa      1140
     tttttagaag aagccgaacg tagacggcag atattaacaa ataagttaga cttagaaagc      1200
     gacactgcag aaactaccct gtataaccaa ctaatacgaa ccagtataga aacattaatt      1260
     ctaagattac caattcacat acagttaaga atagttaaat gcgaaattcc gaatttaaga      1320
     tcattaataa atatattgca agaaaaggga atttatgaaa tagcaactac atacaagaac      1380
     aatacaaagc cagtctcaaa tcccattaaa tcacctaaca atgcaactca cagacaaaca      1440
     actaactact ataatcatac aacaccattc caaccatcat acaacgccat gtatcaacca      1500
     attcgccaac caatttcata tataccacct caattaccca gaactaaccc taatccgttt      1560
     tcccaatacc aataccgtca acttcaccct caacctaacg tatctgttat agctcaacct      1620
     agaccattga atcgtcaaca tacatttgac cagaaccgac caggacttag ttattcaaac      1680
     gcactaaata caagagaaaa tataacgacc ggtggaccag cactaaagag acaacgaccg      1740
     tctgacagtg gacaatcacg tatgagtttt gatgaggctc attaccaaga agaattagac      1800
     caaactcatc aacagttcaa tccttacatg cattacggga atcatcccca atatcctttc      1860
     gatctttaca tgccttacgg gccgcccccc aacaacatcc cgatttatta catgccttac      1920
     gaccccccac aacaacatcc ggttggcata caagagatgg cagaggcacg agaagagcca      1980
     actgaacctc ctatggaatt aataacagaa gctcaaacgg ctgagaattt tcggccccaa      2040
     gcctcggaac aagccaattc ataattatta aacacaaagg actcaattta aaatgcttaa      2100
     tagacacagg ctcaacagta aatatggcca ctcaaaattt tttcaaatta ccaatccaag      2160
     agatagcaaa gaaaataaac tcaagtaatg gccagttcat tgcacaaaag aaagtaacgt      2220
     tacccaaaaa taatcttttc cctaaaccat acgatttttt catatatcct ttttcaacta      2280
     aatacgactt gattttagga cgacaattac ttgacgaggg aactacatca gtaaattacg      2340
     gaccccgtac agttacaata tacggacacg tgcacgaaat gatcgatgcc ttccttcctt      2400
     cagaagaaat acatattcaa gatacacaga ataattcctt taggctagac cacttaaatt      2460
     ccgaagaaaa agcaaaattg ataaccctcc taaaagaatt ccaggacctt caatataaga      2520
     agggagacca gctcacattc actaataacg taaaacacac tattagaaca tcccataatg      2580
     acccagtata cagaaagcct tacggatacg cacccggact agataccgaa gtagaaaacc      2640
     aaataaaaga aatgttagat cagggaataa tccgagaaag caattcccct tattgtagcc      2700
     ccattgtagt agtacccaag aaaccagaca tctccggaca gaagaaatac agaatagcca      2760
     tagactaccg ttacctcaat gaaataacaa tagcagacaa atacccaata ccaaatatgg      2820
     acgaaatctt aagcaagtta ggaggctgca actattttac tacaattgac ttaatcaaag      2880
     ggtttcacca aatagaaatg gaccccgagt ctatccccaa aacagccttc acaactaaga      2940
     cagggcatta cgagtatacg cgtatgccat ttggactgaa aaacgcccca gctaccttcc      3000
     aacgatgtat gaacgatgta cttcgtccac tattaaataa aatctgtatg gtatacttgg      3060
     acgacattat tgtattttca gcttccttag aggaacatct tcaatccctt agagcagtct      3120
     ttcaagcatt atctaatgct aatctaaaac tccaattaga taaatgcgag tttttaaaac      3180
     acgacacata tttcttagga catatggttt ctccagaagg tataagacct aacccggaaa      3240
     aactacgagc aatagaaaat tacccccttc ctactaagcc gaaggagata aaatcatttt      3300
     taggactcac aggtttttat agaaagttca taccccattt cgcacagatt gcaaaacccc      3360
     taacaacatg tcttaaaaag gacaaaaaag tagatattaa aaacccggaa tatattgagg      3420
     cattcaaaag gttaaaactc cttatttcaa acgatcccat acttcgatca ccagacttca      3480
     agaaaaaatt tgtactcaca acagacgcta gtaatgtagc tctaggagca gtactttctc      3540
     aagatggtca ccccataagt tatattagca gaacacttaa cgaccatgaa acaaactaca      3600
     gtacgattga aaaagaacta ctagctattg tttgggcaac gaaaacgttt agacactatt      3660
     tgctaggtcg acattttgaa atagcaagtg atcaccaacc gttgtgctgg ttgcacaaga      3720
     tgaaggagcc caacgctaaa ttaacaaggt ggaaattcag acttgcagaa tacgacttcg      3780
     atattaaata cgtcaaaggc aaagaaaatc atgtagcaga tgccctatcc aggattacta      3840
     tagaggaagc gttctttact gaagctacac agcacagcgc ccaagaagac aaccagaatt      3900
     taatttccct aacagaaaaa gcggtaaata attacaatag acaagtcatt ttcactaagg      3960
     gaccagaaaa agtaaaacag gagaattatt ataagaaaaa gatcattcat atttcgtacg      4020
     aaacactcac tcataaaaaa gccaaacagt atttgataga ttacttcgta aacaaccaca      4080
     gcgctttata catagacagc gacgctgatt ttgaaacaat acaggcagcc cataaagaaa      4140
     ttatcaaccc aagcaccaca aaggtaatta gaagcctaac tttactaaaa aacattaaat      4200
     catatgcaga atttaaggaa ttaatccttc aatcccatga aaagttattg cacccaggaa      4260
     tccagaaaac taagaaatta tttagtgaaa actacttttt tccaaatagc caactacaaa      4320
     tccaaaacat tataaacgaa tgtcaagttt gtaatctagc aaagtcagag catagaaata      4380
     ccaaagtccc atttaaactc acgccaagta tagaattctg tagagacaaa ttcgttatag      4440
     atatttattc agtcgaaggc aaacactatt tgagctgcat agacacttat tcaaaattcg      4500
     ctacactaga gcagataaaa accaaggact ggatagaatg caagaacgcc ctgatgcgca      4560
     tatttaatca attgggaaaa ccgaagctat taaaagcaga cagagatggt gcattttcaa      4620
     gtctagcatt aaaagaatgg ttagaaacag aaggagtaga actacagcta aataccacaa      4680
     aaacaggagt agcagatata gaacgttttc ataagaccat taacgaaaaa ataagaataa      4740
     tcaatactat gaaaaatact gaaacagacc tgagtaaaat agaaactata ctttatactt      4800
     acaatcacaa aacaaaacat gacaccacgg gacaaacgcc cgctcacata ttcttatacg      4860
     caggacaacc taccttgaac acgcaggaac taaagagaac taaaatagac aaattaaaca      4920
     aaggtagaga agaccacgat atcgacacaa gatacagaaa aggaccatta caaaaaggca      4980
     aattggacaa cccatataaa ccaaccaaaa acgtagaaca aacagacgct gaccattaca      5040
     aaattactaa tagaaacaga gctatgcatt actacaaaac acaattcaaa aaacgaaaga      5100
     aaattaatca aacccatacc ccgactcaaa tggctaccag ttagactaca cagattcaca      5160
     attatatttt gagaaaagaa aacaaagtgt atagtaatga aaataaagaa ataaacaatg      5220
     aatgtgtcac caatataatt aagcacctaa atccaatctg taattttaag ccaataccca      5280
     caaatgaatt aatgaaatat atagaataat gatgtataca aaactaaaat taagaaaaaa      5340
     caaaaaaaaa aaaatcagga cataccacca caaactggaa tggaagaagt tccactaccc      5400
     ttactatatc catcagtccc agcccaagta taggcttatc tttaagggaa gggaagtgac      5460
     gtattcacgc caactcatca cgctcagtta attgaatatt                            5500
//
ID   ROVER_DM    repbase;    DNA;    DRO; 7318 BP.
XX
AC   AF492764;
XX
DT   13-SEP-2004 (Rel. 9.08, Created)
DT   13-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Drosophila melanogaster transposon rover, complete sequence.
XX
KW   ROVER_DM; env domain; gag domain; pol domain; transposon.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RA   Kaminker S.J., Kronmiller A.B., Bergman C., Carlson J.,
RA   Lewis E.S., Rubin G., Ashburner M., Celniker E.S.;
RT   "Complete sequence of rover transposable element on 3R.";
RL   Unpublished.
XX
DR   Genbank; AF492764; Positions       1    7318.
XX
SQ   Sequence 7318 BP; 2989 A; 1603 C; 975 G; 1751 T; 0 other;
     agtaacataa tatgcttctc atattacgtt tacatactta cactaattgt acatacaatc        60
     ttgcacatgc ataaacacat gaaaccagtt tacattttta cttacactta agcgcataat       120
     ttgttgtgca tccataccgt tatttttccg ttcttttttg tacacatata ctgattagac       180
     attcccgttt ctcgcgactc acttcgagcc gatcaaaaac tctgtacagt cagtcttaag       240
     ccgacaacga agaaataaag atctaaacta aaaaatacct cgtgttgatt ctgaaacttc       300
     tttaaaggcg ttgatcttag tcaaacgacg gatcatttgt tcgactcgaa tagtaaaata       360
     cgtaagtggc gcagtcggta ggataataca ttgttgatgc gatagtaacc ctattcaatt       420
     cttcaattat tatccacaaa agaactaacg cagtcgcgtc gtgctaagtg gaaagtgtta       480
     accaatggta ctcaatccca taaagtgacc acgaagtgaa ataacttaaa attacaaaaa       540
     ttttaagaag acgcctttga attcgctgag tagtaaatcc acaaaaggtt actcaaacca       600
     aagcgaaaca gctaagagcg caacacaaca aacttaaatt aaaaacttac aaataagtga       660
     ataacagaaa tattacgaac aaataagtgc gaaaattcaa caaaacctaa gctaaagaac       720
     tataactaag tgaataacaa acattataag tgaattaaat taataagtga acaacacaac       780
     aaacttaaat taaaaactta caaataagtg aataacagaa atattacgaa caaataagtg       840
     cgaaaattca acaaaaccta agctaaagaa ctataactaa gtgaataaca aacattataa       900
     gtgaattaaa ttaataagtg aacaacacaa caaacttaaa ttaaaaactt acaaataagt       960
     gaataacaga aatattacga acaaataagt gcgaaaattc aacaaaacct aagctaaaga      1020
     actataacta agtgaataac aaacattata agtgaattaa attaataaat gaacaaacac      1080
     aaacacaaag ctcagacctg gaatacaaac taatagtgga aatcaagaac ccatagtgaa      1140
     aaccaaaacc ctatccaaaa cataaaccta cagtaaaaac ttgaacttta tcgaaaaacg      1200
     aaacctatcc gaaactgcaa accttaccca gaacgtgaac cttacctaaa acattaaata      1260
     acaataaata caacaacaac aatggcaaca gcaagcccta taatactatc cgactcaaat      1320
     atgagtcagg tcgagagaca gataaatgct gtcgaaatct tcaatggaga cccgaatact      1380
     ctacatacct ttataactcg catcgacttc attctggcct tataccaaac tactgacgaa      1440
     aggcagaagt tgataattta tggacacatc gaacgcaata tcagcggcga cgtcatccgt      1500
     actctcggga ccaacaactt taccagctgg attgaactaa ggaccagatt gatcctatat      1560
     tacaaacccc aggcaccgag tcatcaactt ttggaggatt ttcggaacat tcaatacaaa      1620
     ggcaacatca ggcagtttct ggaggaagcc gagaaaagac gacaagtttt aatgagtaag      1680
     ttagaactag aaaataactc agctgaaacc gccttattta ccagacttat tcaagatagc      1740
     atagaaaact tgatcctaaa actccctaac catattcatc taagaatagt taactgccaa      1800
     atccccgatt taagatccct tattaatatc ttacaagaaa agggtctata tgaacctcaa      1860
     acattaaaca aagataactt taagccagct cctaattcta ataggacgcc aaataactta      1920
     ccaaatagac aagttaatgg ccaaaataaa cctataacac cttttcaacc gtaccataac      1980
     aacgtctttc aaccctatta tccaccatac ccatacgcac caatccatac acccaggccc      2040
     aatcaaaccc cttttcccca atatcaacca agaccaacct acccacaacc taacataccc      2100
     agaccgaatc ctgtctttaa tcgacagaat atcttcgacc aaaatcgttt cggacctaat      2160
     caaacttaca caccgaataa cttccctcca actgggaaca cacaaaccaa caacccggta      2220
     aaaagacaac gaccatcaga cagcggacag actaaaatga gcatagaaga actaagatac      2280
     caagaaatgg tatcaaacca acccgaatac ccttaccatt attactatcc atactaccca      2340
     gataacttcc aaccacaacc atatccttat caaatgagtt atatcccaga cccaactcaa      2400
     atccctttcg aacaagatca tgacacttcg gacaaaacac aacaagaaca gacagcacca      2460
     aacgatgacg aatcagacaa taccaaagaa gcagaaaatt ttcggctagt tgccccggat      2520
     caaaccaata tataattatt aaacataatg acatagactt aaagtgccta attgacactg      2580
     gatccaccat aaacatgctt acttggaaca ttttcgaaac acctatacaa caaaccaacc      2640
     acctaattca tacaagtaat ggctcggtaa ctattaacga gaccaccact ataccaccca      2700
     ataactactt tcctattgct caggagtttc taattcacaa attctcagat cattatgata      2760
     tgctgattgg acgcaaattg ttgtctaaag ctaaagccat aatagattat caaaagaaaa      2820
     ctgccaccct cttcaacaaa gtctataaaa taaaagacac tgaaaaactt acagaccaaa      2880
     atcatgctca agtagactct tcgttcccac aagaccctac ctttttagaa acctccacac      2940
     ttcaggagaa tctgttccga ctaaaccatt taaatgcaga agaaaaatac aaattaacaa      3000
     acttactgac aagatttaaa gacattcagt ttcacgaggg cgacaaactt agcttcacaa      3060
     accaagaaaa acatacaatt aataccacac ataatattcc agtttactct aaaatgtata      3120
     gcttccaaca atcatacgaa caagaagtag aaagacaaat tcaagaaatg ttagaacaag      3180
     gcatcattcg agaaagcagc tcaccgtact gcagccccat ctgggtagta ccaaaaaaat      3240
     tagatgcttc cggacagcag aaacttcgaa tagtcataga ctacaggaag ctgaatgaaa      3300
     taacaataaa tgaccgatac cctatgccaa atatagacga aatactagga aaattaggga      3360
     ggtctaatta ctttaccacc atagacctgg caaaaggctt ccatcaaata gagatggatt      3420
     cagaatcaat agccaaaacg gctttctcta ctaaatacgg acattacgaa tatactagaa      3480
     tgccatttgg gcttaaaaac gccccagcta ccttccaacg ctgcatgaat aacctacttc      3540
     gtccgctttt aaataaaaat tgtttagtat atctagacga tatcattgtc ttttctacct      3600
     ctctagagga acaccttcaa tcccttgaag cagtcttcga gaaattatct caagccaacc      3660
     ttaaactaca gctagataaa tgtgaattcc taagacaaga aactaccttt ctaggacacg      3720
     ttatcactaa agacggaatt aaaccaaatc ccgaaaaaat caaagctata caagattacc      3780
     cacttccatc taaacctaaa gaaattaaag cattccttgg aatcacagga tactacagga      3840
     aattcatacc caacttctct gacatagcga aaccactgac taaatgtctc aaaaagggag      3900
     taaaaataga tacaaaacat aaagaatata tagaagcatt tcaaaaatta aaattactta      3960
     tttccgaaga ccccatatta aaaataccaa attttgaaag aaaatttgta ttaacaactg      4020
     acgcaagcaa tgtagcatta ggtgctgttc tatctcaaga tggacatccc attagctaca      4080
     ttagcaggac cctaaacgaa catgaagtta attacagtgc tatagaaaaa gaactactag      4140
     caatagtttg ggccacaaag acctttagac actacctgtt aggacgacat tgcgaaatag      4200
     cttctgacca tcaaccattg tgctggctac acaaattaaa agaacctaac tcaaagctga      4260
     ctaggtggaa gattagatta tccgagtacg acttcgatat aaaatatatc aaaggaaagg      4320
     aaaaccatgt cgcagacgca ctgtctagaa tcaaaataga acaagcattt ttcggagaat      4380
     ctacgcaaca tagcgcagaa gaagataata gcgacttaat agggttgtcc gaaaaagcca      4440
     ttaattacca taaaagacaa attattttct caaaaggtcc caatagtagt atagaacacg      4500
     aaacttattt caaaaaacaa atcatacaca tttcctacaa agaaatgacc ctagaagcag      4560
     ccaaacaata tctactcaat cacttttgct caaagaatag cgctctttac atcgaaagcg      4620
     atgcagactt cgaaatgatc caaaatgcat acacaacaac aatgaatccg aaatgtacaa      4680
     aaattttccg aagcctcgtt ttattaaaaa acatccctac ttatgcaagt tttaaggaac      4740
     taattctaaa cacccacgaa aagctcttac accccggaat tcaaaaaact gtaaaactct      4800
     ttagtgagaa ttattacttc cccaatagcc aactccttat ccagaatata atcaacgaat      4860
     gtcaagtctg caacctagcc aaaacagaac accgtaacac ggaaatgcca atgaaaatta      4920
     cccctaaacc cgaacattgt cgtgataagt tcgtaataga catctattct tccgaaggaa      4980
     accattatct gagctgtatc gatatttact ctaaattcgc cacccttgaa cagattaaga      5040
     caaaagactg ggtagaatgc aaaaatgcct taatgcgcat atttaatcaa ttagggaaac      5100
     ctaaacttct caaagcagat cgagatggtg attctccagc ctagccctca aacgttggct      5160
     cgaaaccgaa gaagtagagt tacaacttaa tactacaaaa acaggtgcgc tgacatagag      5220
     agactccaca aaactataaa cgaaaaaatc cgcatcataa aaaactctga cgacaacgag      5280
     accaaattaa gtaaaataga aacaatcctt tacatttaca accacaagac caaacacgat      5340
     actaccggac aaacccctgc tcacatattc atttacgccg gacaacctaa cttagataca      5400
     caaaacaata aagagaaaaa aaattaacga aataaataag aatagaactg aatataatgt      5460
     cgacaccaga tacagaaaag gaccattaca aaaaggaaaa ttagaagccc ctttcaaatt      5520
     aacaaagaac gtcgaacaaa ccgacgaaga ccattacaaa attactaaca gaaacagaga      5580
     gacacattac tataagaccc aatttaaaaa acagaagaaa actaatcaac tccccatttt      5640
     acaggcccct tgttcaccat aatacttttt cttactctga caaacctatt caaatccctt      5700
     cagaatacga acaccactgt ctccgcataa acctcttgga tatagacaac ctaactcact      5760
     attttaacac taaagtaacc aactatacac atatccccca aattaaactt ctacacaata      5820
     aaatgttaag ggaacttaac gctataacgt tacaccagac aaatagacag aaacgcggac      5880
     taatcaacat aatgggatct gcatttaaat accttttcgg gacactagac aataacgacc      5940
     ggatacaaat tcataaccaa ttagagtccg cgacaaacaa ctcaattaac atacacgaaa      6000
     tgagcgacat aattcaactt atcaatagta acatgcaaaa gatcaaagaa tttgaagacg      6060
     aacataataa cagagaacaa atgctatacg aactaataca atttaccgaa tacattgaag      6120
     acatcgcaat gggaatgcaa ctctcacgac taggactgtt taacccaaaa ttacttaact      6180
     atgacaaatt agaaaacgtt gacagtagca acatactaca gactaaaacc tcaacctgga      6240
     tcaacactaa ccaactactt atcatagctc atatccctac taaacaaaaa accattcata      6300
     ctattaacat aataccctat ccagataata atggctatca acttgatcat atagacaaag      6360
     acacttattt cgaagaacaa gataaaattt ataaccagaa ctatcaagaa attaacaacg      6420
     aatgtatcaa aaatattatt aagagaacaa atccaatatg taactttgtc cctataacag      6480
     tcgaacaaat aattaagtat gtagaaccaa atagtatcat cacttggaat ctaaacaaca      6540
     ctatcataga acaaaaattg ccaagaaata aataaaaatg taacggttaa cggcaacaaa      6600
     ataataacaa taaaacaatg taaaatcaaa ataggaaaca taatacttaa cgaaaacaag      6660
     ctaaaaaccc cgagataaac cttaccccat tgtacacacc cttaagccta ataaaaataa      6720
     aaccaataga acataaggac attgtacaat taatatcaaa taataatatc acagtttgta      6780
     tagtagtatc aatcataagc ctcacatctt gtattgcttg tatttactta aaactaaaaa      6840
     acaaaataat ccttgaatca caagatgcaa atccaactgc atcaccaaga ttgcgggcat      6900
     caacaccaat agaaggagtg gaagcataag cttccctttt aaagggaggg aagtaacata      6960
     atatgcttct catattacgt ttacatactt acactaattg tacatacaat cttgcacatg      7020
     cataaacaca tgaaaccagt ttacattttt acttacactt aagcgcataa tttgttgtgc      7080
     atccataccg ttatttttcc gttctttttt gtacacatat actgattaga cattcccgtt      7140
     tctcgcgact cacttcgagc cgatcaaaaa ctctgtacag tcagtcttaa gccgacaacg      7200
     aagaaataaa gatctaaact aaaaaatacc tcgtgttgat tctgaaactt ctttaaaggc      7260
     gttgatctta gtcaaacgac ggatcatttg ttcgactcga atagtaaaat acgtaagt        7318
//
ID   QUASIMODO_LTR repbase;    DNA;    DRO; 658 BP.
XX
AC   .
XX
DT   09-JUN-1999 (Rel. 4.05, Created)
DT   09-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   QUASIMODO_LTR is a long terminal repeat from QUASIMODO
DE   retrovirus-like element - a consensus sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; LTR; retrovirus;
KW   QUASIMODO_LTR; QUASIMODO_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-658
RA   Kapitonov V.V., Jurka J.;
RT   "QUASIMODO_LTR.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
CC   [1] (Consensus)
XX
CC   QUASIMODO_LTR is an LTR from QUASIMODO endogenous retrovirus;
CC   it flanks QUASIMODO_I internal sequence and can be found as a
CC   solo LTR.
CC   TATAT target-site duplications.
XX
SQ   Sequence 658 BP; 233 A; 160 C; 103 G; 162 T; 0 other;
     agtagcatat gtgccatagt ataagaccac atatacttac acacacacac acatacataa        60
     ccacatagga acagccatac acaaaatcat agaatgcctt aggatataag tcataaaatc       120
     atgtatccaa taagaaccca aattctggtg acaataacaa atccagccta ccctaatgta       180
     aacattaaca tccgctgccg aatcagttat tcccaccaaa gggtcaaaac cgcttacgca       240
     gctcaagttc tcggctgatc agtacccatg agtgatccac tcaagaaggc acccaatcca       300
     acagacataa acatccgcag ccgcattcgc gactcccacc agagggtcaa aactgctaac       360
     acagctttaa gggtcaaaac tttccacgta gctcaaactc ggctgatcta tatccatgcg       420
     caatccactc aagagagcgc ctaattaacg taaacataaa tgagagccta tgtacgctca       480
     atatgaagaa gtaaataagc tcagccaagg gtttgctaag cgttcgcttt gcaaattaga       540
     tttagatttt attcatactt caattgtgta agacgtgaat ttgtctccga cattcgctta       600
     agtttttgat caataaaaat actttttttt ataaaccaac aaaccgcgaa gttgtaat         658
//
ID   HELENA      repbase;    DNA;    DRO; 661 BP.
XX
AC   U26847;
XX
DT   27-JAN-1997 (Rel. 2, Created)
DT   27-JAN-1997 (Rel. 2, Last updated, Version 1)
XX
DE   Helena repetitive element; LINE-like retrotransposon.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; HELENA;
KW   LINE-like retrotransposon; poly(A) tail; target site duplication.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-661
RA   Petrov A.D., Schutzman L.J., Hartl L.D., Lozovskaya R.E.;
RT   "Diverse transposable elements are mobilized in hybrid dysgenesis
RT   in Drosophila virilis.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(17), 8050-8054 (1995).
XX
RN   [2]
RP   1-661
RA   Petrov A.D.;
RT   "HELENA.";
RL   Direct Submission to Genbank (11-MAY-1995)Dmitri A. Petrov,
RL   Organismic and Evolutionary Biology, Harvard University, 16
RL   Divinity Ave, Cambridge, MA 02138, USA.
XX
DR   GenBank; U26847; Positions      11     671.
XX
CC   10 bp target site duplication.
CC   CDS	<3..530.
XX
SQ   Sequence 661 BP; 205 A; 167 C; 145 G; 144 T; 0 other;
     tgcggatgca tatccctcca attcagcttg aaggagttac cctggagcag ccgccacaag        60
     ctaagtatct cggcatcacc ttagacaagc gccttacctt tgggccacac ctcaaagcta       120
     cggtaaaaaa atgtcggcgc agactgcaac aactgcggtg gctcaacaac aaaaggagca       180
     ccctgccgct gagatgcaaa agagctgtat atgtgcactg tattttgccg atatggctct       240
     atggagtgca gatttggggg attgcagcca aatcaaatta taaacgcata caggtactgc       300
     agaatcgggt attacgacag ataaccaact gtccctggta cgtacgcggt tctacactcc       360
     ataaagacct caaagtgcac acagtcgaag aacagattgg aaggcacaca agcagataca       420
     gcgacagact gctgagacac cgcagcctgc tcgccagagg actactccct gcccaacctc       480
     taaggcgact caaacggcaa ggttttgcca agacgattgg gcgccagtaa gaccacccgc       540
     attaaaatcc tcatactacg ttatggggtt cggctctaaa taacatttct atccatgtgt       600
     tgttaaggta ctaaccatta tgattgttac aggttctaca cttaataata aaaaaaaaaa       660
     a                                                                       661
//
ID   QUASIMODO_I repbase;    DNA;    DRO; 6060 BP.
XX
AC   .
XX
DT   09-JUN-1999 (Rel. 4.05, Created)
DT   09-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   QUASIMODO_I is an internal portion of QUASIMODO retrovirus-like
DE   element - a consensus sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; retrovirus; gag-like;
KW   pol; env-like; QUASIMODO_LTR; QUASIMODO_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6060
RA   Kapitonov V.V., Jurka J.;
RT   "QUASIMODO_I.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
CC   [1] (Consensus)
XX
CC   LTR of QUASIMODO retrotransposon is listed in Repbase Update as
CC   QUASIMODO_LTR. It can be an active retrovirus since some of
CC   its copies are identical.
CC   QUASIMODO has strong target-site specificity: it generates
CC   duplication of the TATAT target-site upon its integration
CC   into genome.
CC   QUASIMODO_I internal sequence encodes gag (position 406-1413),
CC   pol (position 1344-4613) and env-like (position 4477-6033)
CC   polyproteins.
XX
SQ   Sequence 6060 BP; 2532 A; 1030 C; 885 G; 1613 T; 0 other;
     tggcgcagtc ggtaggatcc gcgtgtgaac ataatctctt agagctaata gattagttcg        60
     agattaataa agcgcaactc gtgacgaaca aagtttcgct tgtgcttcag ttcatacaaa       120
     gcagatccgc aaaagaactt atgtgacaaa atatttgtga acagttatct aactctcgat       180
     gttggatact attaatacaa atataaatta aaaaactgca agtgaccatt aaagtgtgac       240
     ccaccaaaat aaataaaagg tgtgactgtt accaggtcag tgttgtgtag cccatctagc       300
     attgattgga ctgctacaaa ggtgtgcgaa ttttaaataa ataaaataaa accccggtat       360
     caatctacca agtgattcaa agaaaaatca actatagcca acaacatggc acaacccagc       420
     gaacaaatta tgattctatc tgaattacat ttgaatcagg ctttgggcca gattcgtcac       480
     atctcaacat ttgacggttc cacaagagaa ctggcatcat ttgtgagacg tgtggacttc       540
     gtgatgtccc tatacccgac aacagacaag aggcaacata gtgtactcta cagtgccatc       600
     gagaggcagc tgtcccaaca tgcacaagaa gtatcccagc tacaacagtg caacacttgg       660
     gctgaactac gatcagtcct cattgatgaa tttaaaaccc aaatcccata cgaagagttg       720
     ctaagaagac tttacaacac ctactggagt ggtagtattc gtaagtttgt agaagaacta       780
     gaaaataaga tgttcgaaat ttcaagtaaa ttatcattag aaaataatta cacaaataca       840
     actctttata ccgccgcaat ggctaatact attaaagatg taatttataa aagaattcca       900
     gacagaatgt tcatgacatt agcaagatat gatattacaa caacaacatt attaagacaa       960
     gtagcacaaa gggaaggcct ttacgataca attgtattaa atacagaaaa agctaaagcc      1020
     aaattaaaca gtccatctac actacaaagc agtagtaaaa ataatggttc tcagaagaat      1080
     aaaggaaata ataatgacca aggtataaaa ccttattata ttcaagcaca gcaaagtcaa      1140
     aatcgaaata attatgcaag taataattca aaaaaagttg aaagcaacca agcgacatac      1200
     aatgagttca aacaaaagtt agaacaaggt agagcgcaaa acgctctaaa ttttcaaaaa      1260
     cccacatctt attctactac taaccagccc caaaaaaggc agcgtgaaag ttccagtggt      1320
     cagtctaaaa tggataccag tgaaaatttt catcaacttg cctcgggatc ggaatcagaa      1380
     gtagaagaag aacataccca ttcatacaaa taaccatgaa cgatatcaaa ctcaaatgtt      1440
     tgattgacac aggttcatca ataaatttga tgagtaaaaa ttttttcaat tgtccgatca      1500
     actcaaaagc tccattagat gtacacacaa taaacggtca aattatttta aaatcaaaaa      1560
     ttacattaaa acctagtaaa ttatgtccga caaagcaaac attttattta cataaattct      1620
     cagaaaaata cgacattttg ttaggcaggg aatatttgga agattccaaa gcaactatat      1680
     gctatacatc caatacagtc actttaaata aatacacatt taaattgcga cttgaagata      1740
     ttaacgaaga agaggaaaca cctaaagaga gtttaaaaga aaacttatta gattccccaa      1800
     atattgagta tgtcaattat gtaattgaca acgaactcaa tgaaacaaat gaatttcgac      1860
     ttgatcatct aaacgatgaa gagaggaaag ccctcaccag tgtcttatac gagtttagtg      1920
     acatacagta caaagaaggt gaaaatttga ccttcacaag tacaactaaa catgtcataa      1980
     caactaaaca cgaagaccca atttacagac gtccatataa atacccacaa agcttcgacg      2040
     aagaagtcga aaaccaaatg aaagacatga ttcgacaagg aatcataaga aaatcgaatt      2100
     ctccatattg ctctcctgtt tgggtagtac ccaaaaagcc agatgcatcg ggaaaatcga      2160
     aatttcgcat agtcattgac tatcgcaacc tcaacgaaat aaccgttgat gacaaatacc      2220
     caataccagt aatggatgaa atattggata agcttggaaa ttgccaatac tttacaacca      2280
     ttgacctcgc aaaaggtttt catcaaatac aaatggatga aaattctata gcgaagacag      2340
     ctttttcaac caaaaatggt cattttgaat atactcgaat gccatttggt ttaaaaaatg      2400
     cacccgcaac ttttcaacgt tgcatgaata atctcttagc agatttaata tacaaaaact      2460
     gtctcgtata tatggatgac ataattgtgt attccacttc attggaagaa cacataatgt      2520
     ctttgcgaaa ggtattctta aagctcagag aagcaaattt aaaattacag ctagataaat      2580
     gcgaattcct aaaaaaggaa actgaattct tagggcacat aattacaaca gatggtatta      2640
     aaccaaatcc cgcaaaaatt aaagccgtag tgaatttccc tataccaaag tccactaagg      2700
     aaataaaatc atttcttggt ctttgcggtt tttaccgcaa atttattcca aacttcgcta      2760
     aaatagcaaa accaatgaca ttacgactaa aaaaaggctc aataataaat atcaaagatt      2820
     cagactatta cttagctttt gaaaaattaa aagtgttaat aacgtccgat cccatattaa      2880
     tacacccaga ttttaaaaag tctttttcat taactactga tgctagcaat tttgctatag      2940
     gcgcggtatt atcgcaagag cataaaccta tatgctatgc tagcagaact ctgaacgaac      3000
     atgaagttaa ttattccgca atagaaaagg aactccttgc tattgtttgg gccactaaat      3060
     atttcaggtc ctatttattt ggtagaaaat tcgagatcca tagtgatcac aggccattgg      3120
     tttggcttga ttcaattaaa gagccaaaca tgaaacttca gagatggaaa atcaaattaa      3180
     atgaatttga ctatcatatc aaatatctcc ctggtaaaga aaaccatgta gcagatgctc      3240
     tatcgagagt aaaaattgaa gaaaacttcc taggagaaac ttccagtaac atttcgttac      3300
     caacacaagc tactattcac agtgctcaag aagataacca atcttatatt tccttaacgg      3360
     aaagaccaat taattactac aacaggcaga tagaatttat aaaagacgat aataataacg      3420
     tagaaactaa aagatacttt cataaaacaa aaattaaaat tcattacata gaaatgacaa      3480
     atgtccatgc caaggaatta attaaagaat acttatgtac caaaagaagc gtaattttct      3540
     ttcataacga aatagatttc cttacatttc aaaacgctta catagaaatt gtcagtccga      3600
     ataacataac taaagttatg aaatcaaaca tcaaattaaa agacattgaa acatattccg      3660
     aatttaaaga aataattata aaaagtcaca gagaactttt acacccagga atagagaaac      3720
     aaactaacct ttttaaagaa aaatattatt acccagacta ccaaaagtta atacagaaca      3780
     ttattaatga atgcgaagta tgtaacatat ccaaaacaga acatagagat actaaactaa      3840
     gatatgagtt aacaccagaa acttttaatc ccagagaaaa atatgttata gatttttatt      3900
     taatcaataa taaaacgttc ctgtcatgca ttgacattta ttcaaaatat gccgctttga      3960
     ttgaagtcag tagtagagac tggctggaag caaaaagagc tcttcttaaa attttcaatg      4020
     aaatgggaaa accgtccgaa ataaaggccg ataaagattc agcttttata tgttccgcgt      4080
     tacatttatg gcttaggtcc gagaatgtga atataaatat cacaacaagt aaaaatggaa      4140
     tttctgacat tgaaagattc cataaaacag tcaatgaaaa gttaagaatc attaatagtg      4200
     agtccgaccc agaaaataag ataacacaat ttgaaactat tctctatgta tataaccaca      4260
     aaactaaaca caatacaact gggagaacac cagctgatat tttcctttac gcaggaacac      4320
     ctgcatatga cacccaaaaa gagaaacaat caaaaataga taagttgaat aaagatagac      4380
     atagctatga agtagatact agatataaac aagcaccatt ggtaaaaagt aaaacaacta      4440
     acccatttaa gaaaacagga cacgtagaac aaatagatga gaaacattac gaagaaacaa      4500
     atagaggaag aaaagttgaa cattataaat ctaaatttaa aaaacaaaag agaattaata      4560
     aaagtaaata caattccagc tcaactcccg aaaatcaagt ggggtccgat taaacagtta      4620
     ttcataataa cacttataat atgtttcatc cgtgccgtcc gtggtcaaag cctagaggtg      4680
     aacccgatac aagctaaaaa tggatatctt atatttaaaa caggatcaat taatatacct      4740
     ataaactatg aatatcacta tttgtccgta aacttaacaa agaccgaaca aacttttgca      4800
     aatttaatta aacaagctga agaatatggt actatagccc aaatccaata tttaactgaa      4860
     aaattagaca gagaaatgaa tggaataaga ataataaaac gcaataaacg tggtttaatt      4920
     aatattatag gtaccgcata taaatacctt tttggcactt tagatcaaaa tgacaaagaa      4980
     gaattagaac aaaaaatata cgatctttct caacatagta ttcaaattaa tgaattgaat      5040
     gaagttatag aagtagtcaa tagaggcatt gaagtaatca accatttaag cgcaataagt      5100
     gaaggtgaca gaagactaga acttttagta tttaacttac aacagtttac cgaatacatt      5160
     gaagatatag aacttggtat gcaattaaca agacttggta tttttaatcc caaattatta      5220
     agacatgatc cattatcaca tgtaaattcc gaaaaattgc taaatataaa aacttctacg      5280
     tggttaaaat cagatgcaaa tgaaatactt attatttccc atattcctag agacattata      5340
     aaaactgcac tttttaacat cgtaccatat ccagacaaag ataataatat acttatagaa      5400
     aatgtaaatg ataaatatta tattcaagat aatcaagttt acaaacaaaa ctcaggaaaa      5460
     ccaataataa acaaatgtat tacaggaata ttaaatcaaa taccaacaga atgcagatat      5520
     tcaaaaacac ataacaatat tggaataact tatgtagaac caaacataat tttaacttgg      5580
     aaattatcaa aaattgtatt aaatcaaaac tgtataatta atagagaaat tataatagaa      5640
     ggagacaata taataaaagc ttttaattgt tctgttcaaa tagaaaacat attaattaca      5700
     agcacaacac tagactacac acaaacggtc tatatcaata acaatgtaac aaaattagaa      5760
     ccattatcat atctaaatgc taaagaaata attaaagaac acactaatac atacaacaca      5820
     ttacaaatta ttacattaac tatacttgct attataatac ttacacttat actatatttt      5880
     atttataaat ataaaggcat tcccaaaaaa ctaattgtta aatataaaaa agagaatcca      5940
     aaacaaatag aacaacaaaa taacacaaca acagaaaata taaatacagt acttgatact      6000
     aatcctgtat tgtatcctag aatatccgcc tgaggacagg ctaaatttaa aggatgggga      6060
//
ID   Transib-N1_DM repbase;    DNA;    DRO; 514 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   21-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib-N1_DM is a nonautonomous family of Transib transposons.
XX
KW   Transib; DNA transposon; Interspersed Repeat; Nonautonomous;
KW   Transib-N1_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-514
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology0-0 (2005)in press.
XX
CC   [1] (Consensus)
XX
CC   Transib-N1_DM is a family of nonautonomous DNA transposons that
CC   belongs to the Transib superfamily. Transib-N1_DM is a relatively
CC   old family: the consensus sequence is ~16% divergent from
CC   Transib-N1_DM copies present in the sequenced portion of the D.
CC   melanogaster genome. Transib-N1_DM elements are characterized by
CC   5-bp target site duplications and 36-bp terminal inverted repeats
CC   (4 mismatches).
XX
SQ   Sequence 514 BP; 169 A; 76 C; 83 G; 177 T; 9 other;
     cactatggga aatttgacca ctttttctgg ccaaaattaa taactccaga acggagaaag        60
     atattaagat aatttttttt gcattgggtt ayactagcac atatctttta tgacattatg       120
     actttgactt awgtctttat cacaaaaata ttttagtaag ncracttaya tttttccggt       180
     attaagggga taacacgatt tttttttagt antttgacag tcacaaacac ataatacaag       240
     ccacactgaa tacaaytcat tttgcagaat aaaaaaaaac gctttggttt aaaagatatt       300
     aaaatatttg tatggaggga aaaacttrtc gttgcagacc tktttttgtg cgtgcaacag       360
     ctgatttctt tgttgtggcg ccatctatat ttatttctgg tatgcagaac taaacattgg       420
     tcaattatga atgcatgcat ttaatattat cttaatcgac cgactttcat aaaataggtt       480
     ttggccaaaa aaagggggta aatttcccat agtg                                   514
//
ID   TRANSIB1    repbase;    DNA;    DRO; 2167 BP.
XX
AC   .
XX
DT   31-JUL-2000 (Rel. 5.06, Created)
DT   24-APR-2001 (Rel. 6.03, Last updated, Version 2)
XX
DE   TRANSIB1 is a DNA transposon, a consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; TRANSIB family;
KW   TRANSIB1; TRANSIB3; transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1816
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB1.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
RN   [2]
RP   1-2167
RA   Kapitonov V.V.;
RT   "TRANSIB1.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
CC   [2] (Consensus)
XX
CC   TRANSIB1 belongs to the TRANSIB family of DNA transposons.
CC   It has generated duplications of the CNNCG target
CC   sites upon its integration into the genome. TRANSIB1 has 43-bp
CC   terminal inverted repeats and it encodes remnants of a DDE
CC   transposase, which is not similar to any known transposases and
CC   is a characteristic of TRANSIB-like transposons.
CC   There are ~10 copies of TRANSIB1 which are ~95% identical to the
CC   consensus sequence. It is likely that TRANSIB1 lost its activity
CC   several million years ago.
CC   TRANSIB1 encodes the 461-aa TRANSIB1p transposase which has
CC   accumulated a few false stop-codons and false frame-shifts,
CC   which are irreversible because of the low number of TRANSIB1
CC   copies present in the genome.
CC   TRANSIB1p (positions 544-1926):
CC   DEYLFGHAELLDIWSNNSRSEDAVRPHIFKKIGQNNLNECCISLLNKKVKSFFDYIRKHLPGCNRSLDRL
CC   KKKHFKWLASSISIIADCKTPKLVYEKANDRLKRKLASDLFGPENNTSVPLLLHAASVSSKKGNEKDMAV
CC   VLKAAGNSDNINNIKRKMFSSEPTQMSVDNALAFLFENGFTKSQYINLKRNTKVHGFDIYPSYPDVLNAK
CC   LKLRPNGIEYFENKAQVKLQQLLNHTTSRILEMQYETFKANTNSIECQLIFSYGYDGSTGQSIYKQRYEE
CC   IGAVYDGSLFVTTIVPLKLVDNEQKIIWINRSPQSIRFCRPLKIEFIKETRELILAEKENLDTQTRNLHI
CC   YLHKINNINIFVKYVGQMTLIDGKVLNILTGCNSCQCCPICAAKPTHLMNVNDFNSDIFDAKSQTLQFGI
CC   SPLHAWIRFFEFVLKLAYRADLKTWHNLHLNMILFYFIFYI
CC   This protein is ~40% identical with those in TRANSIB1 and
CC   TRANSIB2.
CC   There is only partial ~60% nucleotide identity between TRANSIB1
CC   and
CC   TRANSIB2 or TRANSIB3.
XX
SQ   Sequence 2167 BP; 758 A; 325 C; 364 G; 720 T; 0 other;
     cacactggtt ttttatgtgt ttttttttgg cagaaagtca aaaaaaaata ttttaacgga        60
     ataaaaaaat gtatggtttc tttatattta ggatagtctt attagataaa aagtcgattt       120
     ttactttttt acgcaaaact ggcttatcgt cgacctctca aagacagctg attgtcgata       180
     acatgcgtaa gacaaaattg cggcaaatca ttttgcaaca tttgtggttt atatttcctc       240
     agagaattaa aaaagtttaa agttttgtca tggaaaacag tagcacaggt atgtagattt       300
     gtagttcact aacatttttg tgtatgttat atgtttttgt gtagttgtat cgtgttttgt       360
     ttatgtgcct tttttacagt caacttaaca aatgtagctg tgtttcgtgg aatataactt       420
     ttgtatggga aaccacttca aaaaaatttt aacggcaagt tattaactaa catgtgtata       480
     atattataca actagtttca tatgctcctt tttgttcctt tttgaaaaaa ttacgttttt       540
     gtagatgaat acttgtttgg gcatgcagag ctgctagaca tttggagcaa caatagtcgc       600
     tctgaggatg cagttaggcc gcatatattt aaaaaaattg gtcagaataa tttaaatgaa       660
     tgttgtattt cattgttaaa taaaaaagtt aagtccttct ttgattacat aaggaaacat       720
     ttgccaggtt gcaatagatc gttggacagg ttgaagaaaa aacacttcaa atggctggca       780
     tctagtatta gtataatcgc tgattgcaaa actccaaaac tagtttatga aaaggctaat       840
     gaccgactta aacgaaaatt agcttcggac cttttcggac ctgaaaataa tacttctgta       900
     ccattactct tgcatgctgc ttcagtttcg tctaaaaaag gaaatgaaaa ggacatggca       960
     gttgtattaa aagcagctgg taacagcgat aatatcaata atataaaaag aaaaatgttc      1020
     tcttctgagc ccacacaaat gtccgtcgac aatgcattag cctttttatt tgaaaacgga      1080
     tttacaaaaa gccaatacat caatttaaaa cggaatacaa aagtacacgg ctttgatatt      1140
     tacccatcat atcctgatgt tcttaatgct aaactaaagc ttagaccaaa tggcatcgag      1200
     tattttgaga ataaggcgca agttaagtta caacaactct taaaccacac aacttcgcgg      1260
     attcttgaaa tgcagtatga aactttcaaa gcaaatacca actcgataga atgccaatta      1320
     atatttagct atggatatga tggatcaact ggtcagagta tttataagca acgttatgag      1380
     gaaatcggtg ctgtatatga tggatcgctg tttgttacta caattgtgcc attaaaatta      1440
     gtagacaatg aacaaaaaat aatttggatc aacagatcgc cacaatctat acggttttgt      1500
     cgtcctttaa aaattgaatt tattaaggaa actcgagagc ttatattagc agaaaaagaa      1560
     aacttggata cccagactcg taatctgcac atatatttgc ataaaataaa caacattaat      1620
     atatttgtaa aatatgtcgg tcaaatgaca ctaatagacg gtaaagtctt aaacatatta      1680
     acaggatgta actcttgcca atgttgcccg atttgcgcag caaagccaac gcatttaatg      1740
     aatgtgaatg attttaattc agatattttt gatgctaaat ctcaaactct tcagtttgga      1800
     ataagccctt tacatgcgtg gattcgcttc tttgaatttg ttttaaaact tgcatacaga      1860
     gctgatctta aaacttggca taatttacat cttaatatga ttttatttta ttttattttc      1920
     tatatataat atcaataaaa tatttaatta aatacagata caaaaatatt ttttctttgg      1980
     taaggtaaat atttttatgg catatcggcc agatcgttta tatggcagct atatgaaagt      2040
     tgaccaaatc acttgaaatt ttgtgaatca tcttggggga agtaaagagt aacacaaacc      2100
     aaatttggtg aagataggtc atcatttcga atttctgcca aaaaaaaaca cataaaaaac      2160
     cactgtg                                                                2167
//
ID   DM176       repbase;    DNA;    DRO; 7439 BP.
XX
AC   X01472;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Drosophila melanogaster copia-like element 17.6.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; transposon;
KW   reverse transcriptase; Long terminal repeat; Repetitive element;
KW   Copia-like element; DM176.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-7439
RA   Saigo K., Kugimiya W., Matsuo Y., Inouye S., Yoshioka K.;
RT   "Identification of the coding sequence for a reverse
RT   transcriptase- like enzyme in a transposable genetic element in
RT   Drosophila melanogaster.";
RL   Nature 312, 659-661 (1984).
XX
DR   GenBank; X01472; Positions       1    7439.
XX
SQ   Sequence 7439 BP; 2985 A; 1512 C; 1048 G; 1894 T; 0 other;
     agtgacatat tcacatacaa aaccacataa catagagtaa acatattgaa aagccgcata        60
     cgtaaacaat aagtgaccac catgctaatg tggatcaaat aacaaaaata tccactctgc       120
     attttgacac ccccatactg tatgccatct gcgcagtatg cattctaata aacaaattct       180
     ttgacagcgg cacttagcca ttcttgtaaa caaatcttaa agtctgcctg ctctctctga       240
     ggcttctcct ccacttaaga atccaagagc aatgctctcc caaaaacact aacatattct       300
     ttaagcaagc acagaggctt ctcctcattt tcactttcat ttgattttca gtcttaagct       360
     gaacgttaat caataaacaa cacaatcgat accgaaattt tgattcgttt tattttggca       420
     aaactcaatt ttcagcgttg gtcttagttc atattcggaa cggtccattt aatagactca       480
     aaactattta ttgcaaccat ttatttgcaa ttggcgcagt cgatgtgatc agtgttaaag       540
     ttccttgatg cggtaaccag atttgccaat tcctgtgttc tttttgttct ctgacaaaag       600
     taccacgata acgggcaccc acgtgacggt taatatcgct ttaagttttt aattaaacct       660
     cgacaataaa gtgaaaccga aaaatcacaa tttgcctaaa caaacctgaa tttattatca       720
     ggaagacgct attgaatttg tgagaggctg taaatccaat tggttacctc aaagacccac       780
     gaaaaagcta tagtgcaacc cttgcgaaaa tcaaaaccta tcttaaaaaa aaaaaaaaaa       840
     tataaataat aaattaataa gcgaaaatta aaacgtatta aaagtaagaa taataaataa       900
     ataagtgaaa attctatatg ataaaaatta aaaataagaa taataaataa aaagacaaca       960
     ttttaaatta aacaatatta aaaaaatata aaaatattaa aaactatatt aaaaaaaaaa      1020
     aaaaaacaaa aaaacaaaaa aaaaaaaata aataaataat ccaaaaatca aaaatggctc      1080
     aagaaccagc aattgtgcca ccactatcag acagcaacat gacccaggtt gcctaccaga      1140
     ttggcaatgt ggagaaattc aacggtgatc caggctcact atacaccttt gtgagtcgaa      1200
     ttgattacat actggctctt tatgctaccg gagatgaacg ccaacagcag atcatatttg      1260
     ggcatattga acgcagcatc agcggagaag ttatgcgctg cattggagcc tatgacatgt      1320
     acacctggca gcagcttaga agacaattgg tactcaacta taaaccccag acccctaacc      1380
     acgttctttt agaagagttt cgaaagaccc catttcgagg caatgtacga gcattcctgg      1440
     aagaagcaga aagccgcaga caaacactta ctagtaagct tgaattagag caagatcttg      1500
     aagaaaagac tttttatttg aaattaataa aatccagtat agaatcacta attgaaaaat      1560
     tacctacaca catttattta agaataaata accacaacat accagatttg cgatcactta      1620
     taaacctttt acaagagaag ggcatgtacg aacaaataaa tcatacaagt acacatgtcc      1680
     aaaaacaaaa tttctctgat aagccacaaa agtcctttaa tcaaaatact aatcagtcta      1740
     acaatatcag aaaatatcca acacctttcc tacattataa ttcaccaata ccatatcaag      1800
     ctccacaaat ttatcaaaca ccaccaacta ataacccact ttatcgtcat ccaataccct      1860
     accaccctaa tccaaacaat gtttttcaac caagccaaca aaacaatgtt ttccaaccaa      1920
     gccaacaaaa caatgctttt caaccaaatc aacgaacaaa ctttacatct cgaccaattt      1980
     ttaacaccaa tcgaaacaat gcattcgatc agaataggtt cggacaacaa ccccaatatc      2040
     aaaatcaaca atcaacacaa aattcaagtt cctatgtacc caatcgacca ataaaacgat      2100
     taagaccagc taatagtgga cagactggga tgagtgttga cgaaacatta tatcaagagg      2160
     acgcttttta tcagcagtgt gttccatatg actattttta ttatccaact tacgaccatt      2220
     cagactatta tccagaaaat caatatcaaa ttgacgaaaa caaccaaaat ttacaaagaa      2280
     cacaacagtt acagcagatt aatacagacg agacaaacaa tgacaaccaa gaacccaatg      2340
     ttgaacaggc cgaaaatttt cagccacaag ccttggaaaa ccccaatata taacaattaa      2400
     atacaaagaa aataatttga aatgccttat tgataccgga tcaacagtta acatgacatc      2460
     taaaaatata tttgatttac caatccagaa tactagtact tttattcata ccagcaatgg      2520
     accgctcatt gtcaacaaaa gtataatcat accttcaaag attttgttcc caacaacaaa      2580
     tgaattttta ttgcaccctt tctctgagaa ttacgatctt ttattaggaa gaaaactttt      2640
     agcagaagca aaagcaacaa taagttaccg cgatcaagag gtaactcttt acaacaacaa      2700
     atacaaatta atagaaggaa tagcaacaca tgaacagagt cattttcaaa atgtaaatat      2760
     gatacctgac accatgctca gacagccaaa taaaatttca cccattttag aatcagacct      2820
     atacagattg gaacatttaa ataacgaaga aaaacaaaga ttgtgcgcac tcctgcagaa      2880
     ataccatgac atacagtacc atgaaggtga taagttgaca tttactaatc aaaccaaaca      2940
     tactatcaat acaaagcaca atctaccact ttactctaaa tacagttacc cacaggctta      3000
     tgaacaggag gtcgaaagcc aaatacaaga tatgctaaat caaggtatta tacgtaccag      3060
     taattcacct tacaatagcc ccatctgggt ggttccaaag aaacaagatg catcaggcaa      3120
     acagaaattt agaattgtaa tagactaccg aaaattaaat gaaataacag taggagacag      3180
     acacccaatc ccaaacatgg acgaaatctt gggaaaattg ggcagatgta attacttcac      3240
     aactatagac ttggcaaagg gtttccacca gatcgaaatg gatccagaat cagtttcaaa      3300
     gacagccttt tctaccaagc acggtcatta tgaatatttg cgcatgccat tcggattaaa      3360
     aaacgcgcca gccacctttc aacggtgcat gaatgatatt ttaagaccac tcttaaacaa      3420
     acactgtctt gtgtatttgg acgacataat tgtattctcg acatcccttg atgaacacct      3480
     gcaatcgctc ggactagttt tcgaaaaatt agcaaaagcc aaccttaaat tacaacttga      3540
     caaatgtgag tttctcaagc aagaaaccac atttttagga catgttctaa caccagatgg      3600
     aataaaacca aaccctgaaa aaattgaagc cattcaaaaa tatccaattc ccactaaacc      3660
     aaaagaaata aaagcttttc ttggactgac aggatattat cgtaaattta ttccaaactt      3720
     tgcagacata gccaaaccca tgactaagtg tttaaaaaag aacatgaaaa ttgacactac      3780
     caacccagaa tatgactctg catttaaaaa attaaaatat ctaatatcag aagacccaat      3840
     tcttaaagta cccgacttta caaagaaatt cactttaacc acagacgcaa gtgatgtcgc      3900
     tttgggggca gtactgtcac aagatggaca cccacttagc tacattagcc gaacacttaa      3960
     tgaacacgaa ataaattaca gcacaattga aaaagaactc ttagcaattg tatgggcgac      4020
     aaagactttt cgacactacc tacttggaag acactttgaa atatccagtg accatcaacc      4080
     attgagctgg ttgtaccgta tgaaagaccc aaattcaaaa ctgacccgat ggagagtaaa      4140
     attatccgaa ttcgattttg atataaaata tataaaagga aaagaaaatt gcgtggcgga      4200
     tgctctgtcc agaataaaac ttgaggagac atatttgagc gaacaaaccc aacatagtgc      4260
     agaagaggac aatagtgatt taatttttat tacagaaaga cctctaaata catttaacag      4320
     acaagttata ttttcaaaag gaccaccaga cattaaagtt acgaaatatt tcaaaaaaca      4380
     catcacccaa atattttacg acattatgac cagggaaaaa gccgaacaat atttgataga      4440
     ccatttttgt ggtaagaaaa gtgcgttgta tattgagagt gacgctgatt tcgaagtcat      4500
     tcaagccgca cataaattag ccataaacac caaatataca aaaatcctgc gtagcacgat      4560
     tttgttaaaa aacataacca cttatgcgga atttaaggaa ttgatcttga ctgctcatga      4620
     aaaacttcta cacccaggca tacagaaaac tactaaactt ttcggagaaa cttactattt      4680
     ccctaatagc cagctactta ttcagaatat aataaatgag tgcagtattt gcaatctggc      4740
     aaaaacagag caccgaaata cagacatgcc aacgaaaacc acacccaaac cagaacattg      4800
     ccgcgaaaaa ttcatgatag acatttactc atccgaaggc aaacattacg ttagttgcat      4860
     agacatttat tcgaaatttg ccacattaga agaaataaaa acaaaagact ggatagaatg      4920
     caaaaacgcg cttatgcgca tattcaacca gcttggcaag ccaaagttac taaaggcgga      4980
     cagagacggc gcattttcca gtttagccct caagagatgg ctggagagtg aggaagtcga      5040
     attgcagctt aacacaacaa aaactggtgt ggcggacata gaaagactac ataaaacaat      5100
     taatgaaaag attcgcataa tcaaaacatc cgatgacgaa gaaaccaaat tgagcaaaat      5160
     ggaaacagta cttaacatat acaatcataa aaccaaacac gacaccactg gacagacccc      5220
     tgcacacata tttctctacg ctggacaacc aatattagat acccaacaaa acaaagaaaa      5280
     caaaataaac aaaataaata atgacagagt ggagtacgaa gtcgacacaa gatacagaaa      5340
     aggtccacta cagaaaggca aattagaaaa tccttttaag ccaacaaaaa atgtggagca      5400
     gactgactct gatcattata aaattactaa tagaaataga attactcact actacaaaac      5460
     acaattcaaa aaacgaaaga aaaataatca gctctcaatt tcacaggcac ctggcacttg      5520
     ataacattgc tgctgatgct gatcacaaca gttcatggac aacaaattga aattaataat      5580
     attgacacaa accacggata tctccttttt tctgataaac cagtccagat accatcatcc      5640
     tttgaacatc attgcttgag aatcaattta actgaaatag acaccatagc tgattatttt      5700
     gagcaaagac tacgtaccga ctaccatgca ccccaggtca aatttttata caacaaaatg      5760
     agaagagaac tagctggaat agccttgcga catagaaata aacggggact tattaacatt      5820
     gtaggttcag tttttaaata cctatttggc acacttgacg aaaatgatcg agtggatata      5880
     cagaggaaac ttgaaacaaa cgcccataac tcggtaaatt tacatgaact caatgacgct      5940
     attcaattaa taaatgacgg aatgcaaaag atacagaatt atgaaaacaa cagcaacatc      6000
     attaacagtc ttttatatga actcatgcag tttacagaat acatagaaga tgtggaaatg      6060
     ggaatgcagc tttccagact cggtctattt aatcccaaac tactaaacta cgataaactt      6120
     gagaatgtaa acagccaaaa tattttaaac attaaaacat ccacttggat taattacaat      6180
     gataaccaat tattaatcat atctcacata cctattaact tttcattaat aaatacagta      6240
     aaaataatcc cttacccaga ctcgaacggc tatcagctag aatacacaga cacacaatca      6300
     tattttgaaa gagaaaataa agtttacaat aacgaaaata aagaaataaa caatgagtgt      6360
     gtcaccaaca ttattaaaca tttaaaacca atttgtaatt ttgagtcaat ccacacagat      6420
     gaaataataa aatacataga accaaacaca attgtaacct ggaatttaac ccaaacaagt      6480
     ctcaaacaaa attgtcaaaa ttcatttaat aatataaaaa taaaaggaaa caaaatgata      6540
     aaagtaaccc aatgtaaaat agaaatcaat agcataattc taagtgaaaa tctctttaaa      6600
     ccagaaatag atttgacacc attatacaca ccacttaaca taacaaaaat aaaaactgtt      6660
     aaacacaacg acattaatga aatgatttca caaaacaata ttacacttta catatttatg      6720
     actactgtca tcattatact tattttattg tacttatatt taagatacgt atcatttaac      6780
     ccattcatga tgctgtatgc aaaactaaaa ttaagaaaaa atcaaaatca aaacacagca      6840
     caacaaatag aaatggaaga cgttccatta cccctactat atccatcaat cccagcccaa      6900
     gtataggctt ctctttaagg gaagggaagt gacatattca catacaaaac cacataacgt      6960
     agagtaaaca tattgaaaag ccgcatacgt caacaataag tgaccaccat gctaatgtgg      7020
     atcaaataac aaaaatatcc actctgcatt ttgacacccc catactgtat gccatctgcg      7080
     cagtatgcat tctaataaac aaattctttg acagcggcac ttagccattc ttgtaaacaa      7140
     atcttaaagt ctgcctgctc tctctgaggc ttctcctcca cttaagaatc caagagcaat      7200
     gctctcccaa aaacactaac atattcttta agcaagcaca gaggcttctc ctcattttca      7260
     ctttcatttg attttcagtc ttaagctgaa cgttaatcaa taaacaacac aatcgatacc      7320
     gaaattttga ttcgttttat tttggcaaaa ctcaattttc agcgttggtc ttagttcata      7380
     ttcggaacgg tccatttaat agactcaaaa ctatttattg caaccattta tttgcaatt       7439
//
ID   TART        repbase;    DNA;    DRO; 14477 BP.
XX
AC   U02279;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Drosophila melanogaster telomere-associated transposons TART,
DE   TART-A and HeT-A, and TART-A ORF2 gene, partial cds.
XX
KW   DMU02279; TART.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-14477
RA   Levis W.R., Ganesan R., Houtchens K., Tolar A.L., Sheen F.;
RT   "Transposons in place of telomeric repeats at a Drosophila
RT   telomere.";
RL   Cell 75, 1083-1093 (1994).
XX
RN   [2]
RP   1-14477
RA   Levis W.R.;
RT   "TART.";
RL   Direct Submission to Genbank (28-SEP-1993)Robert W. Levis, Fred
RL   Hutchinson Cancer Research Center, Division of Basic Sciences,
RL   1124 Columbia St., Seattle, WA 98401, USA.
XX
DR   GenBank; U02279; Positions       1   14477.
XX
SQ   Sequence 14477 BP; 4765 A; 3610 C; 3009 G; 3093 T; 0 other;
     tctgtctact gtccgccttc gctaagctgg tcgccccacc actttactga cgttctcaat        60
     tttgccgaga aaactctggg agggcagaca aagttcattc tatgtggcga ctggaatgca       120
     aaacacaggc aatggggttg tacccgcgcc tgtcaacgcg gcaccgcact ctacgaagca       180
     gttcaagcag atcccatggc tgagattatt gctaccggct gtgcgacaca tttcccgcac       240
     gacacacgga aaaacccgtc agcaatagat ttctccatat gcaaaggact gggcaggctc       300
     gaaaagagaa tttcctcaag tgcggactta tcttcagacc accttcccat cctgcttgag       360
     atcaacttag atacaagcac cctctttctg caaaagcaaa acaataacat cctcaagaaa       420
     actacgaaca ttgagctctt taagactgtt cttgaaagaa agatacttct taatacggag       480
     ataagagtag cagaagacat aaatgacgcc ataaatatct ttatcaaaaa catcaaggac       540
     tcggctgatg aatcaactcc ctccccaaga atccctgaca acctcagaag aatgcatgga       600
     caagctaaca gaaatagtca caccctcaca ctagacgaaa acacaagcag attgttggaa       660
     gaaaaacgga tactaagtag aatttttaaa gctactagaa cggacgagga caaagctaaa       720
     ctaaaagcag ctgaaaatcg actaaaaaaa gcggtaaaga tcttgagaga aaagagaatt       780
     aataaacaaa ttgaaggaat agacacgaaa aacccggaca gaatgaggaa aatgtggaga       840
     ctgctagatg aaggaaaaaa gacaaaccaa ccgaactttc ccctcaaact ggaaaccaaa       900
     agaggcccca aatggacaaa aacgataaag gagacaacag aagcatttgt ttcccactta       960
     gaaggaagat ttaagccaaa taacaacgta cctgattacc acataaatac agttaactct      1020
     ggactaagaa caattaaaga aagcatgtta acagaaagat atgatgtaaa caagaatccc      1080
     tgtaaccaac ctatcacact aaaggaatta aatgacgaaa taaaaaactt aaagaatagt      1140
     aaagcaccgg gaaaagacct tataacaaac caacttataa aaaccctacc gactaaagct      1200
     acactgtacc ttatcctaat ctataactct atacttagaa ttggatacta cccagacgcc      1260
     tggaaacatg cccaagtgaa aatgatctta aaaccaggga aaagtgtgaa cgacccgaag      1320
     tcatataggc cgatcagtct actctcggga ctctctaaaa tgtttgaaag actacttcta      1380
     aaaagacttt ttagggtaga tctattcaaa aaagccatac cactgcacca atttggcttc      1440
     agaaaagagc acggaactga gcagcaaata gccagggtca cccagttcat cctcgaggcc      1500
     tttgagcgaa aggaatactg ctcagcggtt ttccttgaca tctctgaggc tttcgatagg      1560
     gtctggcacg aaggcctttt acttaaacta gctaaaatat taccatacaa cctatacatt      1620
     attctcgaaa gctaccttac aaacagaaca tttgaagtta aagaccaagc tggagagact      1680
     tcgagagcag gacaaatagg cgcaggggtg ccccaaggaa gcaaccttgg acccatactg      1740
     tactctatct tctcctcaga catgccactc ccacacatat accacccctc cccaacagaa      1800
     agaattatgc tctcaacata cgcagacgac actatagtac tcagctcaga catactagca      1860
     actgctgcca caagaaacaa cgaaaactac ctcaagacat tttcggactg ggcagacaaa      1920
     tggggtatct cagtaaatgc tgctaaaaca ggacatgtca tttatacatt aaaaaacgac      1980
     atacctacaa atctaaagac catgaagatt aagggtcaag caataaaaaa ggaaagcaag      2040
     caatcatacc ttggcgtaat ccttgatagc aagctaacac ttagtcctca cgtcacgaag      2100
     gtagtaggta aatacttgac agcctataga aaaatgtcat ggatcttaaa tgaaagaagc      2160
     aaactcccta ctaatactaa gatgctgatc ctcaaatcag ttctatcgcc aatatggcag      2220
     tatgccatag cagcctgggg tccccttgtg acagatgcac agataagacg gatacaagtt      2280
     gaggaaaaca gaaaaatgag agacatatgc agagcgggaa gatacacgaa aaaccaaact      2340
     ataagggacc gctactgtgt caaaacagta gaagagttct atcaacaggc tgtccacagg      2400
     ttctcagaaa ctacaaaatc gcaccctaat gtagctgttc gcaggatatt ctctaggcac      2460
     tatatcccga acagactaga aagaagcagg cagaggtact tgaaaatgac aatggaccat      2520
     atcacgcaaa aacagactgg actgaccctc tcacctaaac tcttaaaaat ccctgatcta      2580
     gatgactgca gaaccttaaa aaagcgaagc gagagagaga aaataagaca aacgcatcta      2640
     actgaactcc ccaccctgct gagactagag gaagaggagg cagagctcaa aagaataaaa      2700
     aaacaggaag agagggaaag aagggaaagg gaaaaccaaa agtggcctcc agataggtgg      2760
     tgtgaattgg aaataaaccg atataataaa aaatatagaa atggcgatct aaccaggcag      2820
     gaaattatag aaaaattccg agggcaacca ttaaatgtac aacgaataat cctacccgac      2880
     tacgaaggtg actaaaagta aatcaaaaca aactagggtc ggagcataaa gcagaaataa      2940
     ttaacctggc ggaaggggcg gcaaaaatat ttaaaagaaa ggaaataaat acaaaaaggc      3000
     taaaggctaa gttacaggtt acataaaaag ggaaatgtgc ttatagatat aatggtaaaa      3060
     ttaacttaac taaacaccta ctggaaaaca aaaccatgat ggctgcgtac ttaaaacgtt      3120
     tctcctggcg cgattgaaaa tccatctttc ctatccaacc gagggatctg cgactgcggc      3180
     cttctgccgt tccggctcct gatggatcca tctgctgctg gaatgggtgc cacaccggcg      3240
     ctccaaccta aaagaaagat aatatgtctt agttttcttt ccctttttct cataaaaaac      3300
     aaaagctcat ctggagtctg ataatagctt tagctcacca agacagcaaa aacaacagca      3360
     tcaaggccag caacagtgga ggcagagacc aagcggtttg ctgaacattt cgctgcccac      3420
     acccaccatt cctggaggct ctgaatgagg gagctgaagc ctctgaaaat tgaagatcct      3480
     actccaatgt gacactttcg gctccgagct caacgccggc gctgcaaatc cggcgttata      3540
     aggaaagggt gctccagctt gtggagtggt ctttccccag aggcagcagc agcagcaacg      3600
     ccagcggcaa ttggcgacct ctgcgtagcc gagtcaatcc cgttatcggt ccgtctggcg      3660
     atgcgttccg acgcggcggt atgcgtccat agggaccgcc tagaatgctt ggccaggaga      3720
     cagcagtaga cctgggcgtg ggcgtcacca gcaacatggt agccatgcgc agtcaattgg      3780
     ccggtggcaa caatcttgcc atgcagcaat agcggcgcat gctacccttg gagcgacgtc      3840
     aacagctaca tatttttcaa cagtgtagcg caacccttag gcggctacac ctacaccagc      3900
     agcagcgata ttggcagtag cagcatttaa tgtcttgcag cagtttccat ttgacaactt      3960
     ccgacgacca gactcctcgc ttggcccccg gcgattcgcc ctggaagaaa gaaagaagca      4020
     tggattagtc aaatatcaaa gcacaacaag catgcacgaa atcttcgcaa caaggactat      4080
     tccaaggcaa gcgatggtgt gttctttggc tctacatata tcgttgaaat ccgtctccaa      4140
     ctgccgcgag tcacccacga cttccactcc ctgcagacgg acgtaatgca ctacgatgtg      4200
     taaattttcc ggatccaagt gaacgccagg cggaagagga ttccctggat gtgaaggatc      4260
     acaaactgct gctttttcaa gagtccccat ttaacaactt ccgacgacca gactcctcgc      4320
     ttggcccctg gcgattcgcc ctaaaagaaa gaaagaagca tggattagtc aaatatcaaa      4380
     gcacaacaag catgcacgaa atctgcgcaa caaggactat tccaaggcaa gcgatgacga      4440
     acgtaatgca ctactatgtg taaattttcc ggatccaagt gaacaccagg cggaagagga      4500
     ttccctggat gtgaaggatc acaaactgct gcttcttcaa gaggtaaccg gcctcatttc      4560
     cacttgggtc acatcgattg tggaggaagc cgattgggac tatgagcgag ccctaaaatt      4620
     gttcattcag atgaacgctg atcacgaaat cccagatcta gcattcgcct agaatatgtg      4680
     atctcgttgg actgcgtgct ggactgcggc gcatgctttc cctcccgcca gagacgggat      4740
     gcgcgcatca ggatcgacgg gacagaccgg ccgacgtctg gcttcacgtc ggcatctatg      4800
     cgacgacgtg ataatcagct tcacagtacc tgcggatgag ggcacaggcg ccagtcctct      4860
     gcctagcgac acatacacca acagcaacat ctaaaacagt cgcagtagat gcagggaatt      4920
     ttcttgctgc agtctccaac tggaaaaatc cgacggccca actcctagct tggcccggcc      4980
     aatcttcttg gactggcaaa cgatgtgatg aatcgtcctg gaagaaagaa gcatggatta      5040
     tttcttcata cacagcttgt ctactaaaat gcatttcccg gcaaactggc actggggcgt      5100
     tgaaaatacg acactactca ccaaacagca gcaaaaacaa cagcatcggc agcaggcgac      5160
     cagcagctgc tttggctcac ccaatgcgac agcaatatct gcggcgtggc cagcaacatg      5220
     cagcaagcaa aagaccggca tggtggtgaa caacatatcg ctcacgccca acgatctgga      5280
     agccctgagc tagggaactg agtatccgcc agcggatact tatgcagcgg cgaggcgtcg      5340
     gaaatccgat agccggaaga gaggccggag cagcatgttg ggcattttcg ccccagtagc      5400
     agctgctggg gcagcaaggg cagaggtagc agtgtcagcg ctcctggaaa accggccttt      5460
     tctgttgaag acgcgggact gcggcgcaat tgttcctgcc aaccgggagt tctctgcgcc      5520
     tgaggtcctt ttgtgcttca gcggctccat ctgctgttgc atctggcgct tctccaactt      5580
     tcctccctga aagaagagaa tattagtagg agcatgagac caacaacagc catagcttac      5640
     cacggcagcg gaaacagcaa ctgcagaagc ccggtaactt tctgataata tgcagcaata      5700
     agagcggctg gatcagcatg ttgtgtagct tggccccaga agcagcagct gcggtaccaa      5760
     aggcagcgga agcagggtca acatagtctg ctatgctgtg tccataccag catagccaat      5820
     tcagcgatgg tgtttctgcc gcaacagctg atccacaggg tactgcctgg aatgtagtgg      5880
     caaaatcggc agcaggcctg ggcgtaggag ctagtttcac caacaacatg gatcccagac      5940
     gcactcattc ttccggtggc ggcatgctcg caaagtagcg gcggcgcatg caactctcga      6000
     aacggcagca gcaacagagg cgtctcttag atgcagcggc ggcactggcg acagtcctca      6060
     tttctgcagg cccattaggc ggcgacacat tcaccagcag cagcagggag attttattgc      6120
     caaagtcgcc aattggtagt atcctacgac tcgactcatg tttgacccat ggctgatcat      6180
     cacataccga caagcggtgg ctgttttaca ctctggaaga aggaagatta gattaatttt      6240
     tttcccattc tcacacattt tgtatatcga actaggcggc gacacactta ctagcatcag      6300
     caacaacaac aacagcggca gcagttgcag gaaatgatct cacagcaaaa tccaattggc      6360
     acattccgaa gtcccgtact cctcgccggc ccactggcca gaaacagggg cctgcgcgat      6420
     ggtgatgaca acgataaact gcccgtttat cggcgtcaag atggtctcgg ccctgcactg      6480
     gccacctgac cggtgccagt acggcaacaa ctgcaacgga ccatgaatac aataggaggc      6540
     actggcgacg cttctcagtt ttccaggctc atgggacgaa gacgcagtaa tcggcgacag      6600
     aaacagcaac agaggcggca gaagtaggga atatttatcc gcagtcgcca aattattgta      6660
     taggaaacta ctttcggaca accggcttga cttcctattg atgaccacgg atggcgcttc      6720
     attttttctc cttacgatct caaaaatcgg tgcgcctgca gcctgcggat gcttaaagct      6780
     gcccaaggtc gtcctttcgc ataaagatag gcttcctggc tgcttcggcg gatgagccac      6840
     acccgaatag agagtgaaga agccccagca agtcgcccta aaataaaaga aacaagcatt      6900
     agactcggct caaattggaa catccgtcag actgtactca cgcatacact cagacaaacc      6960
     caagcctatt ttattgacga cgcggactcc ggcacatgtt ttcctccata aaaggctgtg      7020
     agtacaacca aagttgacgg gccacgctgg ccgatgcttg ctgcataccg gcatctccgc      7080
     agcaggcacg ttacaagcac cactgaaagt agaaacaggc ttactatagg caaagcgcag      7140
     aaaaacaaat attacaataa gatatagcac gcgatttttc tgcttcgttt ccgctttaca      7200
     agtgagacca ttctccctat atgccattaa cactgacaaa cgcgagtaat taagggagaa      7260
     atactggaat cccaaaaata ctactagtat atttgcccga taagcgatat gctggcggca      7320
     aaaaaaaaag ataatagccg ataagcccgc caaaaaggcg cgaaatatcg ataacaagct      7380
     ggcacgaaaa ttgctagcat atcgatcaac cgccgtgtca ttgagctatc gaaaaagccc      7440
     gcctacgcgc ctagcccaaa tttgcaagtc agttgagatt ataaaaccga cagaggcgcg      7500
     cgcgcaacag tagctaaaag tgaagccagc agcaacaaca acaactaatg gacggccaga      7560
     acgtgaacca aagcggagga tgggcatcgg ttttatccat ctcatcggac gatggtaact      7620
     gctcatcctc gccgccatca gctatagtct catcgctgga taccaagtca tcgctcaact      7680
     ataccttaaa attactcacc aaaactattt tctccttttc cataagacaa agtaaagtaa      7740
     agtaaagtaa agtaaattaa agtaaagtaa agtaacgtaa agtaacataa tatttaaatt      7800
     taaattctac acttgaacaa tggcgcgcaa aactgccgca atgtaattca aaaatgtctc      7860
     ccgcaaattt aaaacataga ttaatacttg taagtatggc gcacatatct gcggccaaga      7920
     aatccgaaaa tgtaatttgc cacaaattgt cactatatat ttttaagcaa aaatcagagg      7980
     acaataaatg ccagcgtcat tagacgttga aaatatttaa aaaaaaaaaa aaaaaaaaat      8040
     ttcaatgttt tttgtaaatt aacttaaatt gttaaatgta aacaagcctt gcaatatgtt      8100
     aatgttacca gtccatgtta ctgtctaaaa gccaagaata caaaaaatac taattataat      8160
     ctaactcacc acgcccaagc cccaaactca ccccatgcaa tgttaaacct ataaattcaa      8220
     ataattgtac ctatatattg cacatactgt aatcaaaggc aaaataaatc gtggatgcgg      8280
     aacagaattt actctgtctc cgtacctccg ccagcaaagt taaaaaagct agatcgatac      8340
     aataaaggat tagtgcggca gaaacatgat gaatataagg tgactcgctg cagcaattta      8400
     tgcacaacgt cacttacctg aactttcttg ccgcacgatc tctgttatca cagctgcaat      8460
     ctactagtaa tgccgcgctg caacagacgg gctacacaaa caaaacaatt aattagtaac      8520
     aaatcaaata aaacaataaa ataatgcact tacctcaatg aatacagcta atctctgacc      8580
     cacatccaat gaaacagaca aaaggagaag ggcccgcaaa cgcaaaataa aatcgccaac      8640
     tatgcgataa taaacacaaa aaattgacaa ttttgcgatg ccgtctccga ctcctgatgc      8700
     cactgcactg acaaggatca ctagcaagga gctgacatta cattaaaaag ctgcaaaatc      8760
     cgtccgcaaa tttcatattt ttcctcagta tcgtatcgtc aatgattttc cgacaacctg      8820
     aaaggaaagg aaaattaata agaaaattat acaaaacata ttaaggacac agaaaatagc      8880
     aaaccagaca ggcaaactaa caaatacaaa tatgtgactc catcctgctg acgacacaca      8940
     agtaaatcct tcaacgcaac cgacaacagg aaacgggcct tgcaaaagca aaacaaaatc      9000
     gccaaatttt gcgattataa acacaaaaaa ttgacaattt tacaatgccg cctgcacctc      9060
     ctgttgccac tgcatcaata aggatcagta gcgcggacgt gatgccactt taaaaagctg      9120
     aaaaatccgt ccacaaaatg tatactcttc ctcagtatca tactgtcaac gaacttccac      9180
     taacctgcaa tgaaaggaaa ataaataagt atatgataca aaacaaacaa aggacaatct      9240
     aaaattagca aaccagacag gcatacaggc atactagcag atgctaatat gcaactccat      9300
     cctgctgacg acaaccacgc aactcctttc tccaagaccg caaatactga cacaaggaag      9360
     cacaagctaa aactgggaat tatttatttc aacaaaatac ttatctaatt gccaattcga      9420
     cgactccaaa tccgcggcac accggcggcg atggcccata aataaagggc ctcctaataa      9480
     attacaaaac gtacctgaaa aatcaaaaat taacgcaacc ataaaaacaa aaacaatcat      9540
     aacactcacc ttcagattag cttccaccta atgtacctga aatacaaaaa caataattaa      9600
     cgcaattaat aaatcaatta aatacaagta taacacttac ctccaagcta atgtacctga      9660
     aaaacaaaaa caaaaaaaaa ttaattcaat aaataaatca aataaataca aatataatac      9720
     ttacctccaa tttacctccc agccaatgta cctaaaaaaa aacaaaaaat ttaatacaat      9780
     cttaaaaaca aataacaaat gtaatactta ccaaatttta attttgtatt catttccatg      9840
     accccaacgc tgcaactgtc ctcggcaaca attcctgttc cggcggctcc atgctgccaa      9900
     tcctgacgca ctggccacaa gacgcggcgc tgctggcaat ctctcgatga acaaccgatc      9960
     tacaatttcc atgacgactc ctcagtcacg atgagacaga agacaccacc aacgccagca     10020
     gctccaaaac aatacacgac ggccgcgcgg aacccatctt cagaattccc tcttcctgac     10080
     gaccggcgaa gcagttctgg aataaacaat gtattaattg caaacatcta ccgatgaggg     10140
     tagaagagat actcaccaaa cgactgcggc gcgggaacaa actaactgca acgccggccg     10200
     gacctatttg ttgcaagtgg cgcgcatcca gcgccagcaa catagctcca gcccaagtac     10260
     aacaacaact tacctgcaac gtctccagag gctcccagcg aatcggtgct tccgtccttc     10320
     tggcgggggt acctgaaaag aaacaaatta agcaacatca gtcctaaatt tcaatgtttt     10380
     tctgtaaaat aatttaaatt gttaaatgta aacaagcctt gcaatatgtt aatgttacca     10440
     gtccatgtta ctgtctaaaa gccaagatta caaaaaaaaa aaatactaat ttacaaacta     10500
     actcaccacg cccatacccc aaactcaccc catgcaatgt aacactcaaa aactcaaata     10560
     attgtaccta tatattgcac acactgtaat caaaggcaaa ataaattgtg gatgcggaac     10620
     agaatttatt ctgtctccgt acctccacca gcaaagttaa aaatatgcgg catcgtgcta     10680
     atcagctccc ccatgctgag cgagatcttg atgcggcgat gcactcacta gcgagcagcg     10740
     ggaacagcat acagcgtcag caacagcagg aagagacttt gtagcagaag cctttcggca     10800
     ttctccgacg acccgactcc tcgatcgggg tcaggcaaat ttggaccgac aaattttccc     10860
     ggcgtttcgt cctggaataa ggaaggaagc acggattaat ttctcccctt cagcttacga     10920
     ccccatgcaa tgtaacactc aaaaactcaa ataattgtac ctatatattg cacacactgt     10980
     aatcaaaggc aaaataaatt gtggatgcgg aacagaattt attctgtctc cgtacctcca     11040
     ccagcaaagt taaaaatatg cggcatcgtg ctaatcagct cccccatgct gagcgagatc     11100
     ttgatgcggc gatgcactca ctagcgagca gcgggaacag catacagcgt cagcaacagc     11160
     aggaagagac tttgtagcag aagcctttcg gcattctccg acgacccgac tcctcgatcg     11220
     gggtcaggca aatttggacc gacaaatttt cccggcgttt cgtcctggaa taaggaagga     11280
     agcacggatt aatttctccc cttcagctta cgacccttct caccaacagc agcaactaca     11340
     acaacatcgg cagcagacga cttgcagctg cttggctcac ctaatgcgac agcaataatc     11400
     ccggcaaggc cagaaacggc accgagcaga agcacgacag ggtgaagaac aacatgccgc     11460
     ccacgtccac caatccggaa gccctgcatt aggggtctga agcgccatta actggaggat     11520
     ccggcagcgt atgcctacgc agaagcgggg cgtcgtaaat ccggtggccg gaatagcgcc     11580
     ttgaacagca tgctgtgtat gtttgcccca aaagcagaaa ctgccgcagc aaaggaaccg     11640
     caagcaggat catcactcgt ggcaaactgg cgtattcctg ttgaagacgc gggactgcgg     11700
     cgcattcttc ctttccaacc gggggcttta gcgcctgcgg tatttctgct ttcacggctc     11760
     catttgctgc tgcacctgac gcctcatcag cgctcctccc tgaaagaaag agaatatgta     11820
     ttagttttct ttccattcct tacaatctct ctcaccaaac ctccacgaca caacaacagc     11880
     agcagaaaca ggtctagccc acaatggcag cagctacagc aatcagcaga agcaaggccg     11940
     gcaaaagcaa caacaaaagc cctctctgaa agcccggatg tggagactga agcgccggaa     12000
     acttaaggat ccgcccccga tgcacgccca ccaacaataa gctggaggag aagttactga     12060
     agcatgggaa gcagcaccag gggtcgcata cgcagcgtca gggctttgcg aaccagatga     12120
     atgaggagag actggaacag cataacatca gcggcagcaa caacagcgcc agcagggtca     12180
     gcggcgtctg catggctgtg tccaaaacaa ctccaattca actgctgtat gatgcagcgc     12240
     accagcggct ttcacaggga ccgtctgaaa cgcttggcag gagccggctg aaggcctggg     12300
     cgaagacact ggagacacca atgcgcgtcc tttcggccgg cggcaacagg cttgccatgc     12360
     aataagaaca gtaaatcctg aaataacagc agaagataca gacgtccaaa ttgcgaacgc     12420
     tgacgccagc cctcacctga acgactcact gtgcagcagc agcaacatca gcaccgatgc     12480
     cctcagcatc ggcagcagag ggtgtttttg gcctttgaca attccctgcg acttgacttc     12540
     ttcttggcac ctggtcaatc atcacgtgcc agcaaacagt ggcttgtcac cctggaagaa     12600
     agaagactgg attagtttct ccccttctaa tacattttgt gtgttgaaat gcatcaggcg     12660
     gcgacacact caccagcaac agcagcaaca acaccagcgg caccggtagc aggaaatgga     12720
     tcctcagcaa aaaccatcgg cactttcaga cgtcccgtac tcctcgcctg gccctggccg     12780
     gtaacagggg cttgttagat ggagaagacg acggtcatcc gacggacagc agcctgaaga     12840
     tggaagcagg cctacgctgc ccacctctcc gatgcctgca gcagcaacgg cagcggctca     12900
     taaatgcaaa ctggcgccag ccctcggctc ttcgggctca tgtaggcggt gacacactca     12960
     ctagcagcta aaacagcaac ggcggaatta gcagaaggca atgttttgcc gcagctgcca     13020
     gatggcatac tcctagcttg gcccctgccc aaaccgtatt ggaccggcaa atgattcgac     13080
     aatccgatct ggaaaaaata agtattgatt aatttttccc ccacagattg gtataaaatt     13140
     gcatttacgg ccaaccggct tcttcctgtt gatgacgtca cactgcgccg catgcttttc     13200
     gccagccaca gttggaatgc atgcattggg gttgacggtc tggatgggcc gttgcctgtt     13260
     atatgctggc atctccgcag cggcgttgtg agcaacgaca ctgaaagcaa caataatatt     13320
     gttaattact gctcaaaact ataacacatt taatcactta cacaatttac acacgcttcc     13380
     tgcctaggag ttgtgggacc agctaccgat aatgccaaca ataccgggaa acgcgtcgcg     13440
     ggacatcgat aacaatttgg cggttaaaat gctagaacat cgagtaccag acatgttttt     13500
     cctgccgata tatcgaagcc caatagcccg ccaacgctca aaacataaat cggagtgtga     13560
     gaccagatac cgaagccgtt aaaagcttcc cggtatatcg ataacaattt ggcggtaaaa     13620
     atattagaac atcgagtacc aaccatgttt ttttttttcc ttccgattaa tcgaagtcaa     13680
     acagcccgcc aacgctccaa atttaaatcg gagtgtgaga ccagctaccg atgccggtaa     13740
     aagcttcgcg ggatatcgat aacaatcagg tggttaaaaa tactataaca tcgagtacca     13800
     gccgtgtttt tcctgtcgat ttatcgaagt ccaacagccc gccttcgctc cgaacacaaa     13860
     tcggcaagtc agtagctttt ttaacccggc agtggcgcct gtgcagcagc tatttaaagt     13920
     gaaaaacacg aaacgcaaca acaaaatgga cggccataat ggagacataa atgaaggatg     13980
     ggcaacagta ctatctatct cgtcggatga tagtaaccaa ctttcgtcgc cgccgtcaat     14040
     tatagtctca tcgctggaca ccacgccaac gcctgtctaa tgcaaatcaa cttacatatt     14100
     actctaaaat ctacttataa ctgtcccctc taatgataag caatttttat gtttacttta     14160
     aacttaaacc gataccttaa actatggcgc gcaaaatgac taccaagaaa tctaaaactg     14220
     taaattgttg caaactattt ctcctagtaa tgttaaattt aaaagcgcgc ataatcgcag     14280
     ccaagttaac caaaaatgtc tctcgtaaat gtaattccta aattaacact tgtaactaag     14340
     cgcgtataaa taccgcaaat ccaaaaatgt aaatatgcca taaattgtta ctatatattt     14400
     tttataaaaa aatcagagta caataaaaat gccagcgtct attaggcgtt gaaaatttaa     14460
     aaaaaaaaaa aaaaaaa                                                    14477
//
ID   DNAREP1_DM  repbase;    DNA;    DRO; 594 BP.
XX
AC   .
XX
DT   02-JUL-1999 (Rel. 4.06, Created)
DT   02-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   DNAREP1_DM is a putative nonautonomous DNA transposable sequence.
XX
KW   DNA transposon; Interspersed Repeat; Nonautonomous; ARS312_DM;
KW   DNAREP1_DM; FORK_DM; nonautonomous DNA transposon.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   284-477
RA   Selick H., Kauffman S.;
RT   "Direct submission.";
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania.
XX
RN   [2]
RA   Tudor M., Mitchelson A., O'Hare .K.;
RT   "Direct submission.";
RL   Unpublished (1991).
XX
RN   [3]
RP   1-594
RA   Kapitonov V.V., Jurka J.;
RT   "DNAREP1_DM.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
CC   DNAREP1_DM is one of the most ambiguous repetitive elements in
CC   the D.melanogaster genome. There are several thousand copies of
CC   DNAREP1_DM in the genome. The average divergency between
CC   DNAREP1_DM
CC   copies and the consensus sequence is 20%. Presumably, DNAREP1_DM
CC   has been mobilized in a common ancestors of Drosophiloidae since
CC   its old age (>20 Myrs) and presence in different drosophilas.
CC   It's possible that DNAREP1_DM was active in Brachycera since
CC   significant part of DNAREP1_DM has been found in promoter region
CC   of P450 gene (U09343) in the house fly genome [3].
CC   DNAREP1_DM is classified as a nonautonomous DNA transposon
CC   because of noticeable conservation of its termini and multiple
CC   internal
CC   deletions [3].
CC   Previously reported ARS312 repeat [1] is a ~200 bp-long portion
CC   of
CC   DNAREP1_DM. DNAREP1_DM is a portion of FORK_DM direct repeat [2]
CC   flanking forked gene suppressor (portion 435-949 of FORK_DM is
CC   88% identical to DNAREP1_DM. FORK_DM has been removed from
CC   Repbase
CC   Update since its other portions are not repeats [3].
CC   Putative relation of DNAREP1 to DNA transposons is also supported
CC   by the 79% similarity [3] between its 145 bp-long 3`-terminus and
CC   134 bp-long 3-terminus of P-like P_DG element in Drosophila
CC   guanche.
XX
SQ   Sequence 594 BP; 182 A; 99 C; 133 G; 180 T; 0 other;
     aaacaagaga gaatgctata gtcgagttcc ccgactatca gatacccgtt actcagctag        60
     tgtgaatgcg aacgcgaaat ttcataattt ttctgggata tcgatagata ttggggaata       120
     aaatgagaaa aaatttaaaa atttttcaaa agtgtgggcg tgacagtttt gggcggcttt       180
     agggcgttag agtgggcgtg gcaaaaagtt ttttggcaaa tcgatagaaa tttacaagac       240
     taataaaaat atgaaaaata tcaaaaaatt ttttcaaaag tgtgggcgtg gcagttttgg       300
     gcggtttgtg ggcgttagag tgggcgtggc aacatgggtc aacaaacttg cgctgcgtct       360
     atgtctctag aatctgtatg cttaatctca accttctagc ttttatagtt cctgagatct       420
     cgacgttcat acggacagac ggacatggcc agatcgactc ggctattgat cctgatcaag       480
     aatatatata tatatataaa tatactttat atggtcggaa acgcttcctt ctgcctgtta       540
     catacttttc aacgaatcta gtataccctt ttactctacg agtaacgggt ataa             594
//
ID   INVADER4_I  repbase;    DNA;    DRO; 2413 BP.
XX
AC   .
XX
DT   24-JUL-2000 (Rel. 5.06, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 1)
XX
DE   INVADER4_I is an internal portion of INVADER4 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   endogenous retrovirus; GYPSY superfamily; INVADER group;
KW   INVADER4_I; INVADER4_LTR; gag/DNA binding protein.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2413
RA   Kapitonov V.V., Jurka J.;
RT   "INVADER4_I.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
CC   [1] (Consensus)
XX
CC   LTR of INVADER4 retrotransposon is listed in Repbase Update as
CC   INVADER4_LTR. INVADER4 has populated the D.melanogaster genome
CC   recently since its proviral copies are almost identical and
CC   flanked by identical or 1% divergent LTRs.
CC   It was transposed in a nonautonomous mode. It encodes only
CC   the gag-like DNA binding protein protein.
CC   INVADER4 generates 4 bp target site duplications upon its
CC   integration
CC   into the drosophila genome.
CC   INVADER4 belongs to the INVADER group of GYPSY-like retroviruses,
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER1, INVADER2 and
CC   INVADER3. INVIDER4_I is ~60% identical to the INVIDER1_I and
CC   MICROPIA_I consensus sequences.
CC   GAG/DNA binding protein:
CC   MAALEAQNRNLMEIIRTMHAPRASASNEKSLHVTLPKFCADSAGADPSAWCTTVDLIFADNA
CC   LVGSALVIALSKALEGSASQWLSQICFAGITWPQFKELFIQRFVGMETSAAILMNVLNGRPT
CC   PGESFAQYGSRIVTLLLSKWKAKDLEEIAVSVALAHMAQIDNNLLRWVFTTNVATRNELQQQ
CC   LQAYAFKKRNNEDDSGPEKKLRMQLQTMCHFCGKAGHKFAECRARKEGTSNTKGRNYSESNT
CC   PGLKDRSNIKCFKCDEMGHVASVCPKGHNKYIEKRVDVCETK.
XX
SQ   Sequence 2413 BP; 766 A; 411 C; 601 G; 635 T; 0 other;
     tcagaagtgg gatcgccttc gccacaagag accagatctg atcagtatat ggctgcgttg        60
     gaggcacaaa accgtaacct catggaaata ataagaacca tgcacgcacc gagagcatcg       120
     gcgtcaaatg aaaagtcctt gcacgtcaca ctgccaaaat tctgcgctga cagcgctgga       180
     gcagatccat ctgcatggtg caccaccgtg gatttaatct ttgcagataa tgcgcttgta       240
     ggcagtgcac tcgtaatagc gttaagcaaa gcattagaag gcagtgcatc gcaatggctg       300
     tcgcagatat gcttcgctgg catcacgtgg ccgcagttta aagaactgtt catacagcga       360
     ttcgtaggaa tggagacgtc ggctgctatt ttgatgaacg ttttgaacgg acgtccaaca       420
     cctggagaga gctttgccca gtatggaagt cgcattgtca ccttgttgct gtctaagtgg       480
     aaggccaagg atttggagga gattgcggtt tcggtagcgt tggctcacat ggcacaaatc       540
     gataataatt tgttgcgttg ggtgtttacg actaatgtgg ctacgcgcaa tgagcttcag       600
     caacaactgc aagcttacgc cttcaagaaa cgtaacaacg aagatgattc tggcccagaa       660
     aaaaagttaa gaatgcagtt gcagaccatg tgccattttt gtgggaaagc tggccacaaa       720
     ttcgccgaat gccgtgctcg aaaggaaggt acatcaaaca caaaaggaag aaactacagc       780
     gaaagcaaca cgcctgggtt aaaagatcgt tcgaacataa aatgttttaa atgcgacgaa       840
     atgggacatg tggcgtctgt atgtcccaaa ggccacaaca aatacatcga aaagcgagtt       900
     gacgtgtgcg aaactaagtg agccaagtgg actgtgtttt tcaattgggt gagccctttc       960
     catttttttt tttgattcgg acgccgaatg ttctttaata aaattaaaat aaattaagta      1020
     acaaattaag agcttggttt cgttttattt attaaatcta ataaatttag tatgtacaaa      1080
     tccaaagtta tcaaagccgt tcaaaataat gcacatgaga atagtttgga aatactcttt      1140
     gacatcaata tagaagtaag cgataatgat aaatgtaaat taagaaatat attggaaaag      1200
     tatgccgata gtttcgtaac tggaatacca aataaggcgc attgaaaatt cgtttaagta      1260
     ataaaaataa aagtgttcaa gggcgcccat agcgactcag tttccattgc tacagatttt      1320
     ggatcaaata gatcgtttgc ggtgtggtaa atattttttt catttgtttt agacatggcc      1380
     agcggatttt ataaaatacc gattcatcca gattctatag aagagtcaag tatgtctttc      1440
     cttagagctc ccagtcgcat catagtggat caaggcagaa gctttgtcag caacaagttc      1500
     cgtgagcttt gttcaacaaa caggattgag ttgttttcaa tagctacaga tgccagcaga      1560
     gcaaatgggc aggttgaaaa caaatgagcg tccaagcaag gaaaacatgc gaaaggatgt      1620
     agagtagttc ggtatgaggt catgtgttaa gtgagaagta tcatcgagtg attaatgtac      1680
     tagatggtca tcgacacaat ttgaagtcgt tagttatcaa gcgaacatat aaatattcgc      1740
     atgaatgtaa tggtgactcc caacagagaa aagagttgaa ggatggcact agtgatcgtg      1800
     catctgtgtc ccaagagaga aaagagttta aagatggcac tagtgatcgt gcatctgtgt      1860
     cccaagaaag gaaacatttg gcgaactgtt atgaatagaa tggcgtgtga ccgcactata      1920
     acagctaact cgcagggacg agaagtgtta tggcgggggt caagtgatga tgactgcact      1980
     ataacagcta actcgcaggg acgagaagtg ttatggcggg gttcaagtga tgatgactgc      2040
     actataacag ctaactcgca gggacgagaa gtgttatggg gggggtcaag tgatgatgac      2100
     tgcactataa cagctaactc gcagggacga gaagtgttat ggccgggggt caagagattg      2160
     ggtgtgagag aagacacgcc aatgttatta tgagaaatta aagtcatgga aaatgtaaat      2220
     agtttgaagt tttgatatgt aaattggaga tgtctttgtt aaagaaaaat cagtcatgag      2280
     atgaattgtc aattaaataa ttactgatta ttacttgttg tcattaattg ttcttaagtt      2340
     gacgaagttg tgtgacttgg acttgattgg tggattaggc acacgaggga cgtgtgaaag      2400
     gtcaggaagg ccg                                                         2413
//
ID   BS2         repbase;    DNA;    DRO; 4721 BP.
XX
AC   AF237761;
XX
DT   26-JUL-2000 (Rel. 5.06, Created)
DT   26-JUL-2000 (Rel. 5.06, Last updated, Version 1)
XX
DE   BS2 is a non-LTR retrotransposon.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; LINE; X-element;
KW   BS2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4721
RA   O'Hare K., Tudor M., Davis J.A., Feldman M., Grammatikaki M.;
RT   "A novel LINE from Drosophila melanogaster, the X element.";
RL   Unpublished.
XX
RN   [2]
RP   1-4721
RA   O'Hare K., Tudor M., Davis J.A., Feldman M., Grammatikaki M.;
RT   "BS2.";
RL   Direct Submission to Genbank (22-FEB-2000)Biochemistry
RL   Department, Imperial College of Science, Technology & Medicine,
RL   London SW7 2AZ, UK.
XX
DR   GenBank; AF237761; Positions       1    4721.
XX
SQ   Sequence 4721 BP; 1321 A; 1215 C; 1183 G; 1002 T; 0 other;
     aatgttaaat aaaggttcgt gtctaacaat acgcacctga caaagtggat taagtgaaat        60
     tagttttcgc ggtaataaac ttatggacaa gaccagaata ctggcacaca tagcaaatag       120
     tgacccccca agtcactaac agtgaaataa tagtgaaacg aaaacatttt cattcaaaaa       180
     tacaaagtta agtttctcga actggggctc cgctgcccag ctgccacgcg atcgcacaaa       240
     cagctgtttg cgagcttaaa gctttctatc ccagggttca agttttggct agaaccctgg       300
     tgatttggtg cacacttcaa tatgaacact ttaaatgaaa ccgctgcggc tgatgaatcg       360
     ttggatactg cgtttctctc gagcccccaa tgtgctgccc cgcagcgctt tcaaaaaata       420
     aagcgaaagt ctcgtgcttc tccggagact gaaaggaaaa aacccaaatc aaccatcggc       480
     aaacaagggg aaaacccttc ggctacagaa cctagatatg gcggcaattc aaaccgattt       540
     ggtttacttg cgcatctcac agctgacaaa caagtaggca atgaaattgg cgatctgtat       600
     gaccagccca gtaccagtca tcaagctgca attgctgccg ctaagcggga tgcagcctcc       660
     gctggtacca ctagctcagc caaaagagcg cagtccaaac cacctcctat agtaatggag       720
     ggagtggacg acgtatacct gatgatgcag agcatcgaaa atatagtgga cctagaaaag       780
     attgaggcta gggcgtcaat gagcggtgtc ctaaggcttt acgcggctga cgctaataca       840
     tttcgcacca tagtgaactg gctcgagatc gaagagtatg agttccactg ctaccagctt       900
     aaagaggaca ggccttacag ggtatgcgtg aaaggcctgc accacagtac gctacatcac       960
     caaatcaagg atgagctgga aaagatcggg cacaaggttc tcgatattca cacaccgctt      1020
     aggcgaaacg aaccgggtac ctcaaaagcg tcgccagtca atatgttctt cctaaatatt      1080
     gctgctgcgg caaacaataa ggagatcctg gcggtaaagg cactatgcca tatgagagta      1140
     gttattgagc ctctccgcaa gcgtaacgct attgtccagt gccatcgttg tcagcagatt      1200
     ggccacacag ccaaatactg ccgtaaggcc cacatttgtg tgaaatgtgc cggcgaacac      1260
     ccagccaagg actgtaccag gccacgcatc gagctgtgca cttgctacaa ctgtggcggc      1320
     cagcatcctg caaactataa aggttgcagc aagctacaag cgttcctgca gcgatccaga      1380
     cccagaagtg gagtggctgg aagaacagaa gtaagcgatc gaccaactcc acggggctta      1440
     gctggaggta aggagatccc ctcttctcga ggcggaatat cttatgcaga tgtggctaga      1500
     gggtccattc accacaagca accaatgagc ctgacgcacc agcaacagaa gcaaaagcaa      1560
     cagccctatg atggaagccc cagtcgtcaa aggagccgca gccggacaag ggcgtctagg      1620
     ggtacactcc agcgctcgac ggatgctagc agcagcattg aagccatcct gcagacgctt      1680
     aatgagaaca ttaattcttt gcgctcgatt caagagaagc aaatggaatt aatgatgatg      1740
     atgatgaagc aacagcaaca acagtcacat cagcaggggc agattatcaa tctgctcact      1800
     gctctccaag cgcgtcaagc gccataatga tgccgctgcg catcctagtg tggaacgccg      1860
     acggcgtatc cacgaagttg cctgaagtag agtgcttcgt gcgacgtcac gaaatcgatg      1920
     tattactgct cagcgagaca cactgcaagg gggcagagac gcctaagcta ttcggatttg      1980
     tagcctacac tgccaatgat ccgagtggtg gcaacgccaa aggcggagca gctatcttaa      2040
     tcaaaaatag ccttgcccac tttccgctaa caccaatagc cactgccaag gtgcaacttg      2100
     cgccggcggt tattgaaacg gcacttggtc ctataagctt tggagcggtc tactgcccac      2160
     cgagatttgc atggactacg gacgagttta aggacatttt ggaagagttc cagacgaagt      2220
     tcattgttgc aggcgattgg aacgcgtccc actggctctg gggtgcggga aggagcaacc      2280
     aaagaggcat tgcattagcg aatctcgtcc taaattcgga ggtggactcg ctagcaacag      2340
     gaggaccaac aagatacccg tacggctgta gaggctcacc agggtacatc gattttgcac      2400
     tgacaaaggg tgtgctgggc atccacgcta acataagtgc ggttgttgag cttagctccg      2460
     accacctgcc tctggtaatt acgctggatg cgggggcaat atcctaccct aagatggagc      2520
     ggcttatcac taggcgtact aacctggagg tattccaatc gcaactggag tccacactgc      2580
     ccctcaacac tgccataaac tctggacagg acgttgatga tgctatcgaa ctgctcacca      2640
     acaatatcaa gtcagcagct agattggcaa ctcgcagcat atctcggcag cccgcggcag      2700
     atcgaatccc aatacccagg gagatcctgc tgcttatagc tgagaagagg cgcttacgca      2760
     ctaggtggat gaggtctcgg cacccgtcgg acaaaacgga atggaaccga gctctgagta      2820
     ggctccgatg cgcgttggtg ctgcacaaag ccgcatggtt cgacgaaagg cttgccaata      2880
     ccggagtcga aagcgaagcg acgcattcgc tgtggaaggc cacgcgcgca atcaaaaggc      2940
     gttgcacgag gaaggcgcct ctagtcgata gcaacgggac atggtgtcgg accgacttgg      3000
     gacaagcgga ggtattcgct gcgcacctcg ccgagcgatt tcaaccattc aagcttgcca      3060
     gcctgcaaca ggttgaagaa actcaggacc agctgaacca agcgcttcaa atggatatgc      3120
     caatcacgcc gtttgaaccc tgcgaggtag ccgaagtcat tgtgcgccag agtaacaaca      3180
     aagcacctgg acatgacgtc atctgcaacg ccacattgaa ggccctgccc agacaagcga      3240
     tcctctacat aacgttggtt ttcaacgcta ttgtgaggtt gcaatacttc ccttatcagt      3300
     ggaagctcgg gataatctcc atgatccaca aacctggcaa gccggaaagg gagcccgcct      3360
     cctaccggcc gatcagtctc ctcccttcaa tttcgaaggt gtttgagaga ctgattgctg      3420
     tccggattgt aagcattatg gaagcccagg ggattacccc tgagcaccag ttcggtttcc      3480
     gtgctggcca ctgtactgtc gagcagctcc atcgagtcgt cgagcaaatt ctgactgcct      3540
     acgacagtaa ggaatattgt aacagcctct tcttggacat tcgagaagcg tttgatcgag      3600
     tgtggcacat tggactccaa ctgaaaatca agcagacgct gcctgcccca tattttgggt      3660
     tgctgaaatc gtacctggaa ggaaggaggt tcgctgtgcg ctttcattca gcaatttcca      3720
     ccgagcacaa cgtggcagct ggtgttccac aaggtagtgt cctcggcccc ctgctctact      3780
     gcctgtatag ccacgacatg ccgcagccag atgtaagcct ttacgggaaa tctatgttgg      3840
     ccacatttgc cgatgacgtg tgcgtcacct acaggtcccg atgcgagcac gacgcagccg      3900
     atggtatcca ggactttgca taccggttct cggaatgggc aagacgatgg aatattggca      3960
     tcaatagcag taaatccaac aacgtctgct tcactttaaa gcggagaacg ccaccgcccg      4020
     tctacatcga ggaagtcccc gtaccacagc cgaacgcagc aaagtacctt ggagtgcttc      4080
     tggatcgcag actcacattt tccaagcatg tgaccgacat cagaacgcgc ctacgtgcta      4140
     aggtggcgaa gcactactgg ctactttctt cgcgcagtaa attgtcgcta tccaacaagc      4200
     tgacaattta caaacagatc ctagcaccaa actggaagta tgggtgccaa atctggggct      4260
     tagcctgcga cagccacatc aaaaggatcc aggctattca aaataaggta gcaagactca      4320
     tcaccggctg cgagtggttt gttcgaaaca ccaccctgca cagagacctg aaactcgcaa      4380
     cggtatttga cgaaataaac aagcactcga gcagatacca tgacaggctg gagcgccaca      4440
     gaaatcggct ggccagcgct ttaaacagat ctcgcccacc aaggaggctc aatagaaggc      4500
     aaccgaggga tctcattacc cgatctcctt tgacaagggt ccgcagaagc tgacgcttat      4560
     cttaaatcct atttgttata tgtgattgtt atgtaattgt agttaaatta ctgtaaattt      4620
     gaaaaagcta actatagtta gccggcgagc ccaaatgggc tgaattaata gataagaagg      4680
     acacaaaggg gcttcaagac ttccccgtat gccttaataa a                          4721
//
ID   TRANSIB4    repbase;    DNA;    DRO; 2656 BP.
XX
AC   .
XX
DT   24-APR-2001 (Rel. 6.03, Created)
DT   27-APR-2001 (Rel. 6.03, Last updated, Version 2)
XX
DE   TRANSIB4 is a DNA transposon, a consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; DDE-class;
KW   TRANSIB family; TRANSIB4; TRANSIB4p transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2656
RA   Kapitonov V.V., Jurka J.;
RL   Direct Submission to Repbase Update (APR-2001).
XX
CC   TRANSIB4 belongs to the TRANSIB family of DNA transposons.
CC   It has generated 5-bp duplications of the CantG target
CC   sites upon its integration into the genome (it has happened
CC   a few million years ago).
CC   TRANSIB4 has 40-bp terminal inverted repeats.
CC   There are ~10 copies of TRANSIB4 which are ~93% identical to the
CC   consensus sequence.
CC   TRANSIB4 encodes the TRANSIB4p transposase (positions 545-2152).
CC   The transposase is not perfectly recovered since it contains a
CC   few false stop-codons and a deletion.
CC   TRANSIB4p is 37-44% identical with TRANSIB1p-TRANSIB3p.
CC   There is 60-62% nucleotide identity between TRANSIB4 and
CC   TRANSIB1-TRANSIB3.
XX
SQ   Sequence 2656 BP; 932 A; 455 C; 451 G; 818 T; 0 other;
     cactatgggt aaaaagccgg aaattttggt attaatgtaa ttttttttgt gattgatatt        60
     ttaatgctgc tttcattttt tgattcctaa gtaacaagat agcataaaaa taattttaaa       120
     acatttttac gagttatcgt ttatttttgg cgcgctttca aagtcagctg attcagaggt       180
     gctttgaatt gtgaaaattg gcggaaaaag ttgaacaaat tgcagcgcaa acattgtctt       240
     catagcaaac tttgagttta tttttaatta tggaaaaaac aagtcagagt atgtaaatta       300
     ttcgtgaata cacgttttcc gataattgtg tgtggttgtt gttgaattgt ccaatgtatt       360
     gcttgtgagt attttcaatt gtttactaac aaacgttcta gtgttctgtg gaatattact       420
     tttgtatggc acaacgaatc accaaagtta aagttgtatg tttttaacaa atatatgtgg       480
     aatcaaatgg tattaatgtt ttttgcccct ttttgccctt ttttgcgaaa cattttatgt       540
     tgtaggtgtg tataagttta gtcatgcagt tctgctggat gtttggagca acaacaaacg       600
     cgatgcagac gctgttaaca gttatatttt ggaaaatata gaagagaact ttgagactaa       660
     agagcaaaag attacaattt caaagaaagt gaaccaattt attacttatg taaacaagca       720
     cttaaggaaa tgcaatcgaa tgttggaccg attcaaacga aatcatttat tgtggcttgc       780
     gtctaaaatt gttgtcgtta ttgataagcc agaaatgaca ctatgcaaac ctagccgaaa       840
     acagttaaca tatgaagatg cagggcctca acctaaaaaa aaaattagca aattagctgg       900
     ctgcagaaca agggcattca acaccacttc tcgtacatgc tgcttcaatt tccgcaaaaa       960
     aaacgaagca ggcagaaacg gcctttgtat taaaaaaaaa aggataagca gtgaaaacat      1020
     acatgatata aaaaagaaaa ttgagacaaa tcatcctatt aaaataagtg ctgataatgc      1080
     tttagctctc ttaattgaaa atggatttac aaagcagcaa tataataata taaaagcgct      1140
     caataagcag caaggatgcg atattttccc tccttattca aaagtagcag aagcaaaatt      1200
     gaaatgcagg ccttccgaac ataaaatttc tgaaaaaagg ccaggagtat cgtagcaaga      1260
     tttgctagat catacagctg gccacatact tttaatacaa gagtaagttt tttgtgttca      1320
     tccagaccca acgaattgta cattaattgt gagctatggc ttcgatggat ctacggacca      1380
     aagcacgtac aaacaacgct ttctatcaaa cgaatgtatc gccctagatc aattcctttt      1440
     cgtcactcca attataccgc tgaaactaat agatgaaatc aacaatcgag ttatttggat      1500
     acattcatct ccacaatcgg tgagatttgg tcggcctttg aaaattgagt ttataaagga      1560
     aagtgctgcc cttatattga aggaaaaaca aattttggat gcggctataa aaaaccttag      1620
     accatattcc tacacttcca aaaaccaaat aatagcatat actgcagacc agcgttcgtt      1680
     ctcgaacagc aagatatttt cgtccgtttt gaatttggac tacaaaatca tttacaattt      1740
     ttatataatt ttgatttcaa tttcttgtga gcacatgatt gatgcgaaaa atttaaatct      1800
     ctataccatt ctacttttaa tttatacgtt aaatacgaac cttatatgga gtacatacat      1860
     ggtaacatag agtagtcacc aaccaatatt ggtacatgga tataaaattg taagccaatt      1920
     tattgttcct gttagtgtcc ttggagaaaa cgcgtcagaa gcgcgcaaca aactttacaa      1980
     gagcgataga aaatctcacg ccaggaaatg tagccgacta gcaaacatta cagatgtttt      2040
     taacagagca gtggattcat ctgatccatt gctttcaagt ctttgtctaa gagatcgaag      2100
     taagtttgga aaaaagaaac tcctcccaaa agaagtaatc gatattcttc aaaatccgga      2160
     tgcagaactt tataaatcaa gttatcattc taataataaa gaaaaagaag tggaagtgga      2220
     agacgaattc aattgccttt ataataagag gaggcagttg aagaatgaca atcaacttaa      2280
     taaaatataa aaaaatttat tgacttttat ctcataataa tggtttttgc atcttgtgtc      2340
     ctcacttcgc tcccacgcca atcccccagg gaagacacct ccggatccac cggttgaacc      2400
     acagacatat taacacccac acctccttcg ccacccatcc atctcccttt aaaaccgctt      2460
     tcatttgtat ataaatacat ttttcacttt attttcaagg attgtttttg tgggcggaga      2520
     tgaaggcgtg gtcagatcaa aaaataaaca aaatccaaaa ttctatttaa atcctaatta      2580
     taaatataaa aaaaatcaag tcgctatctt taaaattgta attaatacca aaatttccgg      2640
     ctttttaccc atagtg                                                      2656
//
ID   INVADER1_I  repbase;    DNA;    DRO; 3186 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   INVADER1_I is an internal portion of INVADER1 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   endogenous retrovirus; GYPSY superfamily; INVADER group;
KW   INVADER1_I; INVADER1_LTR; gag; integrase; protease;
KW   reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3186
RA   Kapitonov V.V., Jurka J.;
RT   "INVADER1_I.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
CC   [1] (Consensus)
XX
CC   LTR of INVADER1 retrotransposon is listed in Repbase Update as
CC   INVADER1_LTR. INVADER1 can be an active retroelement since some
CC   of
CC   its proviral copies are almost identical and flanked by
CC   identical LTRs.
CC   INVADER1 generates 4 bp target site duplications upon its
CC   integration
CC   into the drosophila genome.
CC   INVADER1_I encodes gag, protease (peptidase A2), integrase and
CC   RT:
CC   1 32 897 1495 1896 1966 2499 3186
CC   111111==(=========)=(====)===(====)=(=====)=========111111
CC   LTR | | | \ LTR
CC   | | | \
CC   | | | \
CC   | | | \
CC   gag protease Integrase RT
CC   (peptidase A2,
CC   or retropepsin)
CC   INVADER1 belongs to the INVADER group of GYPSY-like transposons
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER2, INVADER3 and
CC   so on.
XX
SQ   Sequence 3186 BP; 959 A; 612 C; 728 G; 887 T; 0 other;
     tcagaagtgg gatcgcctat acctactttg aacaatgaaa atagtttgct gacaattttg        60
     gagtcgcaaa atcgtcattt ttccgaactt ttgaaacaag tgcaacactc acaaagagag       120
     tcaagagaat cgtttgctgt ggtattgccc aggtttaatc ctgaacgtgc gggatcagat       180
     gcgcaatcct ggtgttcaac ggtggactac atcttgtccg aaaaccaact ggaaggcagc       240
     gctcttgtga tgacccttag caaatcactg gaaggaagcg cgtctcattg gctttcacag       300
     acttgctttc ctggtatatc atggccacag ttccgagaat tgtttttgct acattttgcg       360
     ggaacagaaa cattagcggc agccgttatg aatctgctaa atggacgccc tgcggaaggc       420
     gagtgcctgt cgttatacgg aagccgaatg gttacttcgc ttatggccaa atggaagacg       480
     ctgagcgtgg agcaaatcgc agtctccatt acactggcgc atgcagctgg aattgacagg       540
     cgtttgcggc gtttagtttt cacttccgac atcaacactc ggaacgagct gaaccaagaa       600
     ctaaaggcct attcattcga cgctagaccg agccaccttc caaacgatgg tacatcagag       660
     ccgccaggaa aacgagctaa gccctacttc aagtgtcaca actgcggaaa gcctggtcat       720
     aaaaaggcgg attgtcgatc aaaaacagtg gcagtgcacg ttcagcaacc cgacaggcaa       780
     ccatcaggga aagaccggtc tactttgact tgtttcaact gcggaaaagc tggacacatc       840
     tccaccgtat gtcctgatcg tcaggagcgt tcatcgtcta gcaaaaataa cattgtttaa       900
     gatgtcaaca tctgtaccgt ttttgagccc gtacggacgt tttcgcaatc tggtgagtcg       960
     ttccaatttt gttttgattc tggagccgag tgttcactca tcaaggaggc tacttcgcag      1020
     agactatctg gatccagaat gggcaacgta gttattttaa ggggtcttgg tagcaatact      1080
     atttgtagca ctttgcagat attggctaat gttttgataa gtgaacgctc atatgaaata      1140
     ttgtttcatg tagtgttaga caattatatt aagtatgacg ctctgattgg tcgagatatt      1200
     ttgagccagg gagtcggtgt gacaataaca tcaaaatctc ttactatgtt taacgaaaaa      1260
     tctatattgt ctgttgaagt ttccgaaaag aatcccgatt tggctcatgt tgactttctg      1320
     tctcggaatc cggttccaaa aattgtcaag aattccatag gcgtagtcga aaggcatatc      1380
     aatctgacag aaatatccga caactggtta ttggctgaac agcaaagaga cgaagaaact      1440
     tcttccatta tctctaaatt gcgtaataat gaattgtccg aggatttggc caagacttat      1500
     gaactacggt ctggaactat gtaccgaaaa attcaaagaa atggaaagac tcgatgtctg      1560
     cccataatcc caaagcagtt taggtggtcc gctgtcaaca acgtacacga gtcagttatg      1620
     catctcgggt gggagaaaac tcttgagaaa atgtacgagt tctattggtt cgataaaatg      1680
     tctaagtatg ttcgccaatt tgtggacaac tgtatcactt gtagattatc aaaacctccg      1740
     tctggcaaaa tacaatccga actccatccc attcctaaaa ttgacatccc gtggcatacg      1800
     gttcatgtgg atattacagg taaacttagc ggaaaaagcg accagaagga gtatataatt      1860
     gtgatgatag acgcatttac caaatttgtc tatctctctc atactacgaa gctagacacc      1920
     gatagttgca ttaaggcagt gaggtctgtt atatcattat tcggtgtccc ctcccgactt      1980
     attgctgatc aaggtcgtag ttttgctagt tcagctttcc gtgatttctg ctcagcacag      2040
     aaaatggatt tacatttaat tgccgcaggt gctagtcgtg acaatggcca agtggagcga      2100
     gtcatgagta ctctaaagtc catgctgact gcggttgaaa ctggcccagg atcttggcag      2160
     gattctttat atgagattca gctggccctt aatagcacgc ccaatagagt tactaaagtc      2220
     agtccattag agatacttat tggcagagaa gcaaggccat ttgggcttac acctgttgta      2280
     aaagaacaaa atattgtcga tgttggctta gttagagaaa tagcaaaacg caacatggaa      2340
     aagaatgcca aaattgataa agctagattc gataaaaaca aagccactat tgtaagacac      2400
     aagctaggag accatgtttt acttaaaaat gaagagcgtc accagaccaa attagatcct      2460
     aagtttaaag gtccatttgt agtggccgaa gtattaccag gagatcgata taaactcaaa      2520
     gcattaaata ataaccgaac ttataaatat tctcatgaat ctttgcgatg tatgcctgag      2580
     aagaggatta ccacagtatt tgaagatgaa ggcacagaag atgccagtga tcaagccagt      2640
     gagggctgtg atcttgagaa tgactaaaaa tttgtaaacc tccggaccta ttccaaatgc      2700
     gactttctct acctcatggg tgcccgagtt aagtggttcg ccattttgtt gcagttaagc      2760
     ttaaatttgg taacggttgg tggtgtgagt taactggccg gcttatagac tgcgtcatct      2820
     gggtgccacg tatgttggcc ggattgtcga gttgtaagct gtgagctagg ctaacaaaag      2880
     atggactggc cggtttgaaa aactgtgcgc tagtagaaaa atgtattgaa aatcaagaac      2940
     gttaacgatt tatgtttgaa gaagacaaaa ttatgattgt ttgattgaaa gctgatggtg      3000
     gtccggttct catggcttaa atgtaataaa tgaaatgttt taaatatttg tattggtttg      3060
     atttaaagta ataaagaatg aagaataact ttatattttg aaaaaaaaaa taagcctttg      3120
     atagattctg tttaattatt gagagactgt tagcacacga ggacgtgtga taggtcagga      3180
     aggccg                                                                 3186
//
ID   TART_DV     repbase;    DNA;    DRO; 15099 BP.
XX
AC   AY219709;
XX
DT   17-NOV-2004 (Rel. 9.1, Created)
DT   17-NOV-2004 (Rel. 9.1, Last updated, Version 1)
XX
DE   Drosophila virilis telomere-associated transposon TART.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat;
KW   TART non-LTR retrotransposon; TART_DV; gag domain; pol domain.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-15099
RA   Casacuberta E., Pardue L.M.;
RT   "Transposon telomeres are widely distributed in the Drosophila
RT   genus: TART elements in the virilis group.";
RL   Proc. Natl. Acad. Sci. USA 100(6), 3363-3368 (2003).
XX
DR   Genbank; AY219709; Positions       1   15099.
XX
SQ   Sequence 15099 BP; 5464 A; 3785 C; 2888 G; 2962 T; 0 other;
     gtcgacgagg ggtagagctg ctaagaagca ttcacagcaa caagaagctg aacattcttg        60
     ctacaggtgg ggctacacac ttcccataca caagtaggaa caggccatcc gctatcgata       120
     ttgcggtcta cagggcatta acaatgaccg gactacaaac acactctaca atcgatctag       180
     aatcggatca tctacctata catataggcc tcagagtagg ccgattcccg tataaacaaa       240
     caacaatgcg attgctaccg ataaatgcaa acgtaaaaaa atttcaaaac catttagata       300
     aaaacgttcg tcttaataca gaaataatat cgggacccga tattgaagac gccatcgaca       360
     tattaaataa aaacatatat aatgcttcct tagcagcaac acacccacct cgtagacatc       420
     aacagcaaca aagacaaggc acaaatacaa atcgcatgaa ccatggccgt tttaaattaa       480
     caaacgaaac aattagactt ttggcaataa aacggcagcg caagagagaa catatggtta       540
     tgcgaacacc tctcacgcga agccgactta gccaggccca aaacaaacta aaaaaagcgc       600
     ttcgtatgga caagaagaaa caaacgaaca aaatgtttga acaaatagat gccactgatc       660
     gctacaagat acaaaagctt tggcgcatca caaacaacat caaaaggcaa ccagagccaa       720
     attggccact taaaatacaa gcgactgaca acaacaacag tcgcagcaat agaacacaat       780
     ggactaaaac tagtaaagaa aaggctgagg tcttcgctgc atacctggag caacgtttca       840
     gccccatatt ctcaaatacg gctgaataca gactccaggt gaataatgag ataaacacta       900
     gacagcaaac taacgattgc gacagcggcg ctggcgtcgc tggtgttatc ccttttcgcc       960
     caattacata tactgaggtg acaaaagaga ttggctgctt gacaataaaa aaggctgcag      1020
     gcatcgataa catagacaat agagtcatta aagcactacc aaagaaagca atactgtacc      1080
     ttgtcatgat atacaactgc atactcagac atggccattt cccgcgacag tggaaatgcg      1140
     ctgccataaa aacaatttta aagcctggaa aacccacaga agatgtcgcc tcatatcgac      1200
     caataagcct gcttgcaggt ttctccaaaa tctttgaaag gcttctcatg tacaggctct      1260
     atgaatgctc tgaatttgca aaggccgtgc cactacatca atttggcttt cgcaaagatc      1320
     atggcactga gcagcaacta gcacgggtaa cccaattcat cctgagtgca tttgaaaaga      1380
     aacaatactg ctcagccgtc tatatcgata tacgcgaagc atttgatcga gtatggcacg      1440
     aaggattgct cttgaacttg gcaagatact gcctaatagg ctgtataatg gttctcaaga      1500
     gctatctact tgatcgcaca ttcatcgtac atggaaacga gggcattaaa tctagaatag      1560
     gcaaagttag cgctggagtg ccccagggga gcgtacttgg gccaattcta tatatcatct      1620
     acacatcaga tatgccatta ccacacattg caacacctcc caatccaaca acaacagcag      1680
     caacaataac aaatacagaa acgtccataa ctaacccata caactgcagc atgctactgt      1740
     caacgtttgc cgatgacaca gtcataatga gctctgctga catactgcaa acatcataca      1800
     gtgcaaatca aacgtatctg cgccaattca ccatttggtg caatcgctgg tgcatccaaa      1860
     ttaatgacag caaatcagct catgtagtac atactctacg caatttaaac agccgaatga      1920
     attacctgac tccacgactc aatgggcaag aaatcccctc taaaccaagg caaaagtacc      1980
     taggtgtcca tctggaccga aagctccaca tgcaacacca tgttacgcag ctacgatgcc      2040
     gtcttaaagc actctataat aaactagagt ggctaatagg aaacaaaagc gtactctctg      2100
     tagaatgcaa aatcactatc tacaagcaga tgattgcgcc gatatggaga tatgctttgc      2160
     cgatctgggg tgccatgatc tctgacacac agctacgccg aatagaatcc acacagaact      2220
     ggattctaag gaagatagtg aaggcctcct ggtggactag aaacaaagac atacgtgata      2280
     cttacgacat aggcacagtg gacgaaatat tccatactac aagcaaaaga ttcgccgact      2340
     cacttgctat tcatcctaat gccaacgctc gtaagctaat cgcaagtccg tatgttccaa      2400
     ttcgtcttga tcggcaaagg tatagtctgc aactacaaca acatgttcgc cctctacagc      2460
     aactagtgca gcaatcgcaa gaacaacaac agctgccaac tctgcttcgc atggagcttg      2520
     aagaagaaga agcaaactcg ctcagaatgc aacagcagca gcaacagcag accccacaac      2580
     aacagccagc cagattcagc gaaatgagga taaattcgct aagaaggcac tacagagagg      2640
     gacgaattac gctcgaagag ctaaaactag caattaggga acagccattg gtgattcagc      2700
     aattagtact gcctcgcgag ctggctattc aaatatacca gcagcaacaa cagcagcagc      2760
     aacagcaaca acagcagcag caacagcaac aacagcagca gcaacagcaa caacagcagc      2820
     agcaacagca acaacaccag cagcaacagc agcagcaaca gcaacaagag cagcagcaac      2880
     aacagcagca gcagcaacac cagtaccaac agcagcatca gcaacagcaa caacagcaaa      2940
     tacagcagca gcaacaacag ctcgagggac tccagcatca gccaaatcag tcgcctgacg      3000
     tcgaaatagt gctagataca ccacagcagc aacaagagca acaactagaa cggccacttc      3060
     cacaacctca gcaagccaat ttacaacagc aacggctaac tgaggacgag cagcagcttg      3120
     agcaccgact tgaaagactc aggcagcaac ttgagcgcga gatggacgag gctgcaaata      3180
     acgagccaac tcaacaacag cgaacaccag agcagcagca atcaaaccaa cagcaacaca      3240
     caatagcctt aactgaaaat aaaaatacaa atattaatcc aagcaactca gtctgtgcca      3300
     atataacaaa tttttctatt tcacagagca taataatagc cccatacagc ctcataaaca      3360
     ttgccacaga tgctccttgg caacaaaatc agcccacaac cacacaacag ctccgccagc      3420
     agcactcgaa ccttcaccag cagcacctac agcaacaacg ggaggtagtg gaggcgccca      3480
     gcagcaacaa cgcacagtca acagtcaggg gggctaaaag aagaagaagc agttcaacaa      3540
     gctgtattga acccaaaaga cgctcacctg cagctcctga caaccagcaa cagcggcaac      3600
     tccacactct actcggcaaa aggcactctg ggggaccagc tcaacacaac tgctggcctc      3660
     caaagcgcca gaagctcgtg caacagcagc aacaacgtca agcatgcctt cgcagaacac      3720
     ggctgggtac atggcagctg caaatgcccc acaggctggg aatatggctc ctactctcct      3780
     gctttggcat gcaaacacac cataaggtgc cccagaagct tgtgtgggca cctccagcag      3840
     actacggtca atcctcgacg aacggcagac acctccaaat tgccagaagg cgcccgtggc      3900
     actcctggca gcggctccaa cgtcgatggt ccaattgcgg gcggcaaaca cacaggaagg      3960
     ccaggccgta taacatatta atccatgaga cctgaaatag ataaataata agtaaatttg      4020
     caccaactag aattataaat tccaacaaat ccttaaattc gcccctctgg caaactatgt      4080
     ttacaattta actcaatcaa tatgttaact cagctgttca taacgcaatc gaaagcagcc      4140
     ctgataacat taacagaggt atgtaataac agaaccattg cagtaattgc tcaactgttc      4200
     tgaacgcaat cgccaacaac cctgataacg ttagacagag gcactgttaa taacagaaat      4260
     agtaccgcca acgtgctaaa aattcaaata agcctgctca agcatagtat taagtaatgt      4320
     taaatgtaaa aaataactgt taaatgttta tttatcgtaa ttcgtcacaa ttttctttta      4380
     tgttgtgata tgcatgtaaa attttgttaa aatatgtcat acatgccagt aatttgtcag      4440
     ctagtccgtt tcacaattag acctatttcg ttccaattct gtctcatata ttgcattgga      4500
     actagaatta agcaatgaaa aagacaataa aatgcgacta ctagcttaat cgctagaagt      4560
     tcgccgtagc gcacgcatgc gcagcaattt aaaaagcagc aatttaaaaa agcaatttaa      4620
     acaagcaatt taaaaaaaaa aaaaaaaaag caatttaaaa aaaacacaac ttaaaaatca      4680
     gaatttttca attctaataa ttaaccaagc ttgcaaatat atttgtgaag ttatctgagt      4740
     aattgctaaa caggcatagt ggcaagcaaa tacaataaat atttaaaagg tgcaatagtg      4800
     gtaaagacaa acataactgc accagaaata atatataaag tgcataaatg caaaaaccaa      4860
     ctgtgtctaa aagcccgcct aaaagtccgc ataacgcttc tgaaattacc gcaaactcgg      4920
     ctgtcccccc ccaccgcgca accgaagaat gcagcataag tgaaagagcg aaaagtgaac      4980
     tttcacagtt gcagcaacag ctcacaaaaa atccgcaaaa gcagctcagc cgagaacacc      5040
     ggcgacagca gttgctaagg ctatgcgaag aggaggaaag gttaatgccc gatgtcccag      5100
     cgcagcagcc gacgcttacg ctcaagcata agccgaagct gaaaacagtt ctcgccaact      5160
     cttcaccgcc cagctcggca ccgctgagaa tgtctctgac gaagtcgtcg aaagctaagg      5220
     caaggaaaga gagccaatca tctgcctgca gagagaaaag tccagaagag aacacctatg      5280
     tcaatgtgtt ggagtctgac gatgaaagcg acatagcagc caataaaaat tatgaccagc      5340
     cgcaacagca gacaactatt gcacaggtac ataatttcaa tacaaatact agcataacta      5400
     gcactcccaa agcagcctct cactgtgatc catcgccaaa cgtatcggca cacgaagttg      5460
     aacttcataa tgttgataac acaagagaag ctagctatgt taataacatt gatgaactaa      5520
     cagacgtctt tgacgacgaa gatgatgatg atgactgtta ccggcccgct gctgttatta      5580
     acagctcagt tgctgacatg cttaacagaa caactactgt tgagcataac agcacagcca      5640
     ctgctaacag aggggaaatt cttgcaaatg ttaaaacatc tgatgcattt gctgccaata      5700
     aaattaatag tattactttt gaaaaaatcg aaccaattcc acaaacaata acgccaacag      5760
     tagcaaaagg acctaaattt aactgctcta tgctacctac aacttccctg tctgccaaga      5820
     aaagtttaaa acgtaaaggt acactgccgc aacaaagtaa acaaaagcga gcacagacac      5880
     tggcagtaca aggaaactca cgaccaggca tgaagataca ggacttcttg aagtcatcaa      5940
     caagagtaac taaggcaaca aataaagcag ctataatcaa caaatataaa aaaagcaatc      6000
     gtaatactaa aaaagtaaac ccctctagca gcactaaact caacaacagc agtatggata      6060
     ttgacctgga tagcagcgac atatcagcaa ataacatagg ctctgatgat gacattgttc      6120
     agatccagag caatgcacaa gaggttacaa accacgccac caaagtccag caacaacaac      6180
     agcatcgaca gcagcaacaa catcaccagc agcagcaaca acagcaacag cagcagccaa      6240
     ctaaaagcac aaaaattcca acaatttttc tacccagcat aagtgacata caacaaataa      6300
     ttgatatgct caataataca gtgggtgcaa ataaatatac aacaaagtgc acacaaaacg      6360
     atggagtcag agtgcaatgc agcgacttac tatcgtataa tgcagctata gcactgctcg      6420
     gcgccaatac ggaaatacag atgcacaccc accagatgcg aagcgagcga ggataccgtg      6480
     ttttacttaa aaatgtccac cactccacgc catgcgagca aatccgagca gaattggcga      6540
     aacatggaca cacggttcgc tttgccagcg tcattaaaca tcgatttgag cgacggccac      6600
     ttaacatgtt tgaagtcgaa ctggcaccaa acggcgacac caacgacaaa gtactggaac      6660
     tgaaaactct gggaaaccaa cacattgaag tagaaagaca gctgaagcga gatgagcctg      6720
     tacagtgtca tcggtgccaa tcgtttgggc atagcaagaa ctactgtcgt aggccttttg      6780
     catgtctcaa atgcggtgaa cagcacccga ctacaacgtg tactaaaccc agaaacacac      6840
     ctgctaagtg cgtcaactgc aaggctgacc acatagccag ctttaaggga tgcagtgtgt      6900
     acaaaatgga gcgggaaaaa ctagcagcaa accgtgtccg ggcggcaatt gataggcaac      6960
     agcagcacca acaacagcag caacagcaac aacaacagca gcagcagcag cagcaacagc      7020
     agcatcagca acagcaacag caacaacaac agcaacaaca gcagcagcaa caacaacaac      7080
     aaaatcggca gctacaacaa catcagcagc agcagcaaca acaacatcgg cagctacaac      7140
     aacatcatca gcagcagcag caactacaac accaacacca gcagccacaa tacctagcaa      7200
     ttaatacttc agctcctagt ggaattaagt cgactaagga acggaagcaa cagcaacagc      7260
     aacttcggca acaacagcaa aagcagcagc agcaacaaca gcagcaacat caacaattga      7320
     agccaaacaa tcaactgact tatagccaag tagccagtgg acaagcaaat acgagcctca      7380
     gtcacaaccc agccatgcaa cacctcaaga agtaccagca acagctacaa ctggagcagc      7440
     aacagcagca acgacaacag cagcaacaac aacagcagca gctacagccc gagcagcagc      7500
     agcaacttca gaggcaacag cgactgaggc aacaacaact acctgagcag caaaaacggc      7560
     agcaatatca acgacagcaa gagcagcaat cacatgagca acagcaacga caccagcagc      7620
     aatcgcaaca acaacaacat agacaacagg cggactcacc actcttggag gcgctgcagc      7680
     aaaatgtgat aagtataaat gagatgtcca agaaaataga catgctaatt agcctgttgc      7740
     tcacaatggc agcaagcaac actaatatta ataaacaagg agaacaacaa acaatcccac      7800
     taacaacatc aacctctgat accttgaaca atgtcaataa aaaaaacaat tttcctaatt      7860
     taatgagtac attgattagc acagcacagc caataaacaa cagccaatcg gcaaacgcca      7920
     attgtgaaca catagccact gacagtagcc agtatgtata gagcgaacaa caccaacaat      7980
     gccagcgcga ctgccacatt gagtcaagtc aatgatggca gacacaccac tcacactact      8040
     agtgacacca caactactac aacaacacat ttgtccaacc ttaacagtcc attgcttaac      8100
     aggagaaggc caaacattat tccaaatgac gaaccacagc agcgaccaat atggcaactc      8160
     ttttaaaatt gcatattgga acgctgctgg cgttagaaac aaactaaatg aattagaggt      8220
     tttcatgaat cgacataaaa ttgatattat gatgctcgtc gagctacgat tgggccccag      8280
     cgctctcaat ccaggtcccc caattactat taacggctac catacatatg cggcaactcg      8340
     cccaccacca caccatagat gcgggggtgt tgccacttta gtaaaacacg gaatcaaaca      8400
     cattgccctg gaagcaattg tgtttgaatc catgcaatct gcaccagtag ctgtgaccct      8460
     ggcaaaaaat gagaccattg tcctagctcc aatttattgc ccaccgcaat ataattggag      8520
     cgctgacatg tttgccaaac ttttccaaca ttttgaaaaa ttgagcgggt ccgggttcat      8580
     tttatgtggc gactggaacg ccaaacattc ctggtggggc aaccaacgtg cttgtcgacg      8640
     aggggtagag ctgctaagaa gcattcacag caacaagaag ctgaacattc ttgctacagg      8700
     tggggctaca cacttcccat acacaagtag gaacaggcca tccgctatcg atattgcggt      8760
     ctacagggca ttaacaatga ccggactaca aacacactct acaatcgatc tagaatcgga      8820
     tcatctacct atacatatag gcctcagagt aggccgattc ccgtataaac aaacaacaat      8880
     gcgattgcta ccgataaatg caaacgtaaa aaaatttcaa aaccatttag ataaaaacgt      8940
     tcgtcttaat acagaaataa tatcgggacc cgatattgaa gacgccatcg acatattaaa      9000
     taaaaacata tataatgctt ccttagcagc aacacaccca cctcgtagac atcaacagca      9060
     acaaagacaa ggcacaaata caaatcgcat gaaccatggc cgttttaaat taacaaacga      9120
     aacaattaga cttttggcaa taaaacggca gcgcaagaga gaacatatgg ttatgcgaac      9180
     acctctcacg cgaagccgac ttagccaggc ccaaaacaaa ctaaaaaaag cgcttcgtat      9240
     ggacaagaag aaacaaacga acaaaatgtt tgaacaaata gatgccactg atcgctacaa      9300
     gatacaaaag ctttggcgca tcacaaacaa catcaaaagg caaccagagc caaattggcc      9360
     acttaaaata caagcgactg acaacaacaa cagtcgcagc aatagaacac aatggactaa      9420
     aactagtaaa gaaaaggctg aggtcttcgc tgcatacctg gagcaacgtt tcagccccat      9480
     attctcaaat acggctgaat acagactcca ggtgaataat gagataaaca ctagacagca      9540
     aactaacgat tgcgacagcg gcgctggcgt cgctggtgtt atcccttttc gcccaattac      9600
     atatactgag gtgacaaaag agattggctg cttgacaata aaaaaggctg caggcatcga      9660
     taacatagac aatagagtca ttaaagcact accaaagaaa gcaatactgt accttgtcat      9720
     gatatacaac tgcatactca gacatggcca tttcccgcga cagtggaaat gcgctgccat      9780
     aaaaacaatt ttaaagcctg gaaaacccac agaagatgtc gcctcatatc gaccaataag      9840
     cctgcttgca ggtttctcca aaatctttga aaggcttctc atgtacaggc tctatgaatg      9900
     ctctgaattt gcaaaggccg tgccactaca tcaatttggc tttcgcaaag atcatggcac      9960
     tgagcagcaa ctagcacggg taacccaatt catcctgagt gcatttgaaa agaaacaata     10020
     ctgctcagcc gtctatatcg atatacgcga agcatttgat cgagtatggc acgaaggatt     10080
     gctcttgaac ttggcaagat actgcctaat aggctgtata atggttctca agagctatct     10140
     acttgatcgc acattcatcg tacatggaaa cgagggcatt aaatctagaa taggcaaagt     10200
     tagcgctgga gtgccccagg ggagcgtact tgggccaatt ctatatatca tctacacatc     10260
     agatatgcca ttaccacaca ttgcaacacc tcccaatcca acaacaacag cagcaacaat     10320
     aacaaataca gaaacgtcca taactaaccc atacaactgc agcatgctac tgtcaacgtt     10380
     tgccgatgac acagtcataa tgagctctgc tgacatactg caaacatcat acagtgcaaa     10440
     tcaaacgtat ctgcgccaat tcaccatttg gtgcaatcgc tggtgcatcc aaattaatga     10500
     cagcaaatca gctcatgtag tacatactct acgcaattta aacagccgaa tgaattacct     10560
     gactccacga ctcaatgggc aagaaatccc ctctaaacca aggcaaaagt acctaggtgt     10620
     ccatctggac cgaaagctcc acatgcaaca ccatgttacg cagctacgat gccgtcttaa     10680
     agcactctat aataaactag agtggctaat aggaaacaaa agcgtactct ctgtagaatg     10740
     caaaatcact atctacaagc agatgattgc gccgatatgg agatatgctt tgccgatctg     10800
     gggtgccatg atctctgaca cacagctacg ccgaatagaa tccacacaga actggattct     10860
     aaggaagata gtgaaggcct cctggtggac tagaaacaaa gacatacgtg atacttacga     10920
     cataggcaca gtggacgaaa tattccatac tacaagcaaa agattcgccg actcacttgc     10980
     tattcatcct aatgccaacg ctcgtaagct aatcgcaagt ccgtatgttc caattcgtct     11040
     tgatcggcaa aggtatagtc tgcaactaca acaacatgtt cgccctctac agcaactagt     11100
     gcagcaatcg caagaacaac aacagctgcc aactctgctt cgcatggagc ttgaagaaga     11160
     agaagcaaac tcgctcagaa tgcaacagca gcagcaacag cagaccccac aacaacagcc     11220
     agccagattc agcgaaatga ggataaattc gctaagaagg cactacagag agggacgaat     11280
     tacgctcgaa gagctaaaac tagcaattag ggaacagcca ttggtgattc agcaattagt     11340
     actgcctcgc gagctggcta ttcaaatata ccagcagcaa caacagcagc agcaacagca     11400
     acaacagcag cagcaacagc aacaacagca gcagcaacag caacaacagc agcagcaaca     11460
     gcagcagcaa cagcaacaag agcagcagca acaacagcag cagcagcaac accagtacca     11520
     acagcagcat cagcaacagc aacaacagca aatacagcag cagcaacaac agctcgaggg     11580
     actccagcat cagccaaatc agtcgcctga cgtcgaaata gtgctagata caccacagca     11640
     gcaacaagag caacaactag aacggccact tccacaacct cagcaagcca atttacaaca     11700
     gcaacggcta actgaggacg agcagcagct tgagcaccga cttgaaagac tcaggcagca     11760
     acttgagcgc gagatggacg aggctgcaaa taacgagcca actcaacaac agcgaacacc     11820
     agagcagcag caatcaaacc aacagcaaca cacaatagcc ttaactgaaa ataaaaatac     11880
     aaatattaat ccaagcaact cagtctgtgc caatataaca aatttttcta tttcacagag     11940
     cataataata gccccataca gcctcataaa cattgccaca gatgctcctt ggcaacaaaa     12000
     tcagcccaca accacacaac agctccgcca gcagcactcg aaccttcacc agcagcacct     12060
     acagcaacaa cgggaggtag tggaggcgcc cagcagcaac aacgcacagt caacagtcag     12120
     gggggctaaa agaagaagaa gcagttcaac aagctgtatt gaacccaaaa gacgctcacc     12180
     tgcagctcct gacaaccagc aacagcggca actccacact ctactcggca aaaggcactc     12240
     tgggggacca gctcaacaca actgctggcc tccaaagcgc cagaagctcg tgcaacagca     12300
     gcaacaacgt caagcatgcc ttcgcagaac acggctgggt acatggcagc tgcaaatgcc     12360
     ccacaggctg ggaatatggc tcctactctc ctgctttggc atgcaaacac accataaggt     12420
     gccccagaag cttgtgtggg cacctccagc agactacggt caatcctcga cgaacggcag     12480
     acacctccaa attgccagaa ggcgcccgtg gcactcctgg cagcggctcc aacgtcgatg     12540
     gtccaattgc gggcggcaaa cacacaggaa ggccaggccg tataacatat taatccatga     12600
     gacctgaaat agataaataa taagtaaatt tgcaccaact agaattataa attccaacaa     12660
     atccttaaat tcgcccctct ggcaaactat gtttacaatt taactcaatc aatatgttaa     12720
     ctcagctgtt cataacgcaa tcgaaagcag ccctgataac attaacagag gtatgtaata     12780
     acagaaccat tgcagtaatt gctcaactgt tctgaacgca atcgccaaca accctgataa     12840
     cgttagacag aggcactgtt aataacagaa atagtaccgc caacgtgcta aaaattcaaa     12900
     taagcctgct caagcatagt attaagtaat gttaaatgta aaaaataact gttaaatgtt     12960
     tatttatcgt aattcgtcac aattttcttt tatgttgtga tatgcatgta aaattttgtt     13020
     aaaatatgtc atacatgcca gtaatttgtc agctagtccg tttcacaatt agacctattt     13080
     cgttccaatt ctgtctcata tattgcattg gaactagaat taagcaatga aaaagacaat     13140
     aaaatgcgac tactagctta atcgctagaa gttcgccgta gcgcacgcat gcgcagcaat     13200
     ttaaaaatta acggctacca tacatatgcg gcaactcgcc caccaccaca ccatagatgc     13260
     gggggtgttg ccactttagt aaaacacgga atcaaacaca ttgccctgga agcaattgtg     13320
     tttgaatcca tgcaatctgc accagtagct gtgaccctgg caaaaaatga gaccattgtc     13380
     ctagctccaa tttattgccc accgcaatat aattggagcg ctgacatgtt tgccaaactt     13440
     ttccaacatt ttgaaaattg agcgggtccg ggttcatttt atgtggcgac tggaacgcca     13500
     acattcctgg tggggcacca acgtgcttgt cgacgagggg tagagctgct aagaagcatt     13560
     cacagcaaca agaagctgaa cattcttgct acaggtgggg ctacacactt cccatacaca     13620
     agtaggaaca ggccatccgc tatcgatatt gcggtctaca gtggcattaa caatgaccga     13680
     ctacaaacac actctacaat cgatctagaa tcggatcatc tacctataca tataggcctc     13740
     agagtaggcc gattcccgta taaacaaaca acaatgcgat tgctaccgat aaatgcaaac     13800
     gtaaaaaaat ttcaaaacca tttagataaa aacgttcgtc ttaatacaga aataatatcg     13860
     ggacccgata ttgaagacgc catcgacata ttaaataaaa acatatataa tgcttcctta     13920
     gcagcaacac acccacctcg tagacatcaa cagcaacaaa gacaaggcac aaatacaaat     13980
     cgcatgaacc atggccgttt taaattaaca aacgaaacaa ttagactttt ggcaataaaa     14040
     cggcagcgca agagagaaca tatggttatg cgaacacctc tcacgcgaag ccgacttagc     14100
     cggcccaaaa caaactaaaa aaagcgcttc gtatggacaa gaagaaacaa acgaacaaaa     14160
     tgtttgaaca aatagatgcc actgatcgct acaagataca aaagctttgg cgcatcacaa     14220
     acaaccaaat acaaatcgca tgaaccatgg ccgttttaaa ttaacaaacg aaacaattag     14280
     acttttggca ataaaacggc agcgcaagag agaacatatg gttatgcgaa cacctctcac     14340
     gcgaagccga cttagccagg cccaaaacaa actaaaaaaa gcgcttcgta tggacaagaa     14400
     gaaacaaacg aacaaaatgt ttgaacaaat agatgccact gatcgctaca agatacaaaa     14460
     gctttggcgc atcacaaaca acatcaaaag gcaaccagag ccaaattggc cacttaaaat     14520
     acaagcgact gacaacaaca acagtcgcag caatagaaca caatggacta aaactagtaa     14580
     agaaaaggct gaggtcttcg ctgcatacct ggagcaacgt ttcagcccca tattctcaaa     14640
     tacggctgaa tacagactcc aggtgaataa tgagataaac actagacagc aaactaacga     14700
     ttgcgacagc ggcgctggcg tcgctggtgt tatccctttt cgcccaatta catatactga     14760
     ggtgacaaaa gagattggct gcttgacaat aaaaaaggct gcaggcatcg ataacataga     14820
     caatagagtc attaaagcac taccaaagaa agcaatactg taccttgtca tgatatacaa     14880
     ctgcatactc agacatggcc atttcccgcg acagtggaaa tgcgctgcca taaaaacaat     14940
     tttaaagcct ggaaaaccca cagaagatgt cgcctcatat cgaccaataa gcctgcttgc     15000
     aggtttctcc aaaatctttg aaaggcttct catgtacagg ctctatgaat gctctgaatt     15060
     tgcaaaggcc gtgccactac atcaatttgg ctttcgcaa                            15099
//
ID   HELENA_RT   repbase;    DNA;    DRO; 1317 BP.
XX
AC   .
XX
DT   28-FEB-2001 (Rel. 6.01, Created)
DT   28-FEB-2001 (Rel. 6.01, Last updated, Version 1)
XX
DE   Reverse transcriptase region from Helena - a consensus.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; retrotransposon; HELENA; HELENA_RT.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RA   Petrov A.D., Lozovskaya R.E., Hartl L.D.;
RT   "High intrinsic rate of DNA loss in Drosophila.";
RL   Nature 384(6607), 346-349 (1996).
XX
RN   [2]
RA   Petrov A.D., Hartl L.D.;
RT   "High rate of DNA loss in the D. melanogaster and D. virilis
RT   species groups.";
RL   Mol. Biol. Evol 15(3), 201-207 (1998).
XX
RN   [3]
RP   1-1317
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (FEB-2001).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1317 BP; 417 A; 306 C; 265 G; 327 T; 2 other;
     aaagctccag gaattgacag gatttgtcat gccacgctaa aggttttacc tataaaagcg        60
     ataatatata tagcactaat ctttaatgct attttaagga tccaagtgtt cccaagacag       120
     tggaaaatgg ctgctatttt gatgatccac aagcctggaa agccwgaaga tgatcctgag       180
     tcgtatcggc ctataagcct cttaccctcc ctttctaaat tatgggagag acttattgcc       240
     aatcggataa acgacattat aagacaaggc aatatcttgc cggatcatca atttggattt       300
     cgaaagggac acggaactat tgaacaggtc cacagactgg tgaaacacat attacaggct       360
     tttgacgact gcgagtactc caacgctgtc tttatagata tgcaacaagc cttcgacaaa       420
     gtatggcatg ttggattatt atgcaagata aagacccttc tacctgcgcc ctacttctgt       480
     attttaaagt catatctgga agaacgacaa tttaaaatca cggtgagaaa tagctactcc       540
     tctatatacc caatgagagc tggagtccca cagggcagtg ttctcggacc gctactatat       600
     tccttgtaca ctgctgatat cccttgcccg aatttcgaac acatggcagc accgaacagg       660
     rctcttattg caacctatgc agatgacatc gcagttgtat ataactctag ggacagcaga       720
     gaggcagcta acggactaca agaatatatt aatgctctgg cagcctggtg taaacggtgg       780
     aacctaaaaa taaacccact gaaaacaaca aatccatgct tcacattaaa aacgcttatc       840
     ccgaacaccc ctccaattcg gctagaagga gttaccctga atcagcccct gcaagcaaca       900
     tatctaggta tcaccctgga taaacggctc acctttgggc cgcatctcaa aaacacagta       960
     aagaaatgtg gtcacagatc acaacagctg agatggctca tgaatagaag gagcactctt      1020
     tcgatgaggt gcaaaagagc tgtgtatgcg cactgtatcg taccgatatg gttatacggg      1080
     atccagattt ggggaattgc agccaaatcg aattataatc gtatccaggt gatgcaaaat      1140
     cgcgcattac gacaaataac caactgtccc tggtatgtac gtaactctac actccataaa      1200
     gacctcaata ttcacacagt tgagacacaa attgggagac atacaagtcg atatagtgac      1260
     agattactga gccatagcag tcttcttgca agacgtctca tccccgctcg acctctg         1317
//
