ID   RTE1        repbase;    DNA;    CEL; 3291 BP.
XX
AC   AF054983;
XX
DT   04-FEB-1999 (Rel. 4.01, Created)
DT   04-FEB-1999 (Rel. 4.01, Last updated, Version 1)
XX
DE   RTE-1 is a non-LTR retrotransposon, complete sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Interspersed Repeat; LINE; SHINE;
KW   retrotransposons; RTE1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3291
RA   Youngman S., van Luenen G.H., Plasterk H.R.;
RT   "Rte-1, a retrotransposon-like element in Caenorhabditis
RT   elegans.";
RL   FEBS Lett 380(1-2), 1-7 (1996).
XX
RN   [2]
RP   1-3291
RA   Malik S.H., Eickbush H.T.;
RT   "The RTE class of non-LTR retrotransposons is widely distributed
RT   in animals and is the origin of many SINEs.";
RL   Mol. Biol. Evol 15(9), 1123-1134 (1998).
XX
RN   [3]
RP   1-3291
RA   Malik S.H., Eickbush H.T.;
RT   "RTE1.";
RL   Direct Submission to Genbank (21-MAR-1998)Biology, University of
RL   Rochester, Huchison Hall 334, Rochester, NY 14627, USA.
XX
DR   GenBank; AF054983; Positions       1    3291.
XX
CC   CDS join(65..193,187..3258)
CC   /note="apurinic-apyrimidic endonuclease; ORF2
CC   (translational frameshift from ORF1); similar to second
CC   ORF of many other non-LTR retrotransposons"
CC   CDS 65..196
CC   /note="putative ORF1"
CC   RTE1 has a direct terminal 200 bp-long direct repeat [1].
CC   Southern blots indicate that there are approximately 10-15
CC   additional Rte-1 elements in the C. elegans Bristol N2
CC   genome and a similar number is found in the genomes of
CC   two other geographically distinct strains. The insertion
CC   pattern of Rte-1 is polymorphic between these strains [1].
CC   Database searches and phylogenetic analysis indicate that
CC   representatives of the RTE clade of non-LTR retrotransposons
CC   are found in the bovine and sheep genomes of mammals and in
CC   the silkmoth and mosquito genomes of insects [2]. In addition,
CC   the previously identified SINEs, Art2 and Pst, from ruminate
CC   and viper genomes are shown to be truncated RTE-like
CC   retrotransposable elements. RTE-derived SINE elements are also
CC   found in mollusc and flatworm genomes. Members of the RTE clade
CC   are characterized by unusually short 3'untranslated regions that
CC   are predominantly composed of AT-rich trimer, tetramer, and/or
CC   pentamer repeats [2].
XX
SQ   Sequence 3291 BP; 984 A; 840 C; 732 G; 735 T; 0 other;
     ctctttctgt actaagcctt ttcgtggcga aagggatcaa cagataacca cttcaacaaa        60
     ctcgatgatt tcgtcacatc gagagtggct tggtttggaa ccaagtgcaa attatctggc       120
     caagaagtac accgtctcac gcaggccaga ggtagtgtcg aatactctct gtccgggcgg       180
     ctctagattg gcttagcagg tcattataga gtatctagag acacaacttt tgctctaaac       240
     agcaacccat cctgcctcag tcctccgcat ccggcctctg caaagggaaa gacagttcct       300
     ggagcacgtc ggaagaggcg atctaatctc ggagtccaaa ccatatgtca atcggacttg       360
     gaaattaaga agccgcggga caaaacaaga agaactgact atcgcgtgtg caccttcaac       420
     tgcaggtcct tgtcttcgga tgatcgactt gctgagttgc tagaagagac gaggcgaatc       480
     caattcgacg tcatcggatt gtgtgaaacc aaacgagcag ccgaggcaca cttgatacat       540
     cacgacggta ccggcgtctt cttaggcaaa cggaatgaaa gttctgtatc cggaggggtc       600
     ggcttcatag ttcgaagcac cctccttccc aaaatcgtag aagtacgatt tcttagtcac       660
     cgcatcggct tactcacctt caaagtgagc cgaaaattca actgcacggt gattcaagtc       720
     tatgctccaa ctgcggactc agaccttgag gaaatctgcg acttctacga cagtgttgaa       780
     gacgtcttca gagagtgccg aagcaagtat aaacttgtta tcggcgactt caacgctcga       840
     atgggatgca gacaaaacaa cgaaaggtac attggccccc atgccatgga accaagaaat       900
     gatactggag agcttctcgc aacattttgt gaaaccaacc gtctgtggca cacgaactct       960
     atgttcaaaa agcctatgca caaacggtgg actttcgtca gtcccgacgg gaatcacaga      1020
     cacgaaattg accacattct ggccaatgga aagtttgtca cagataccac tgtactcccc      1080
     tctttcacaa atggtagcga ccataggtta ctccgctgta acctccactt caacaattgt      1140
     ctagcaaagt tggagcaggt cagacggaga aaacctccga aaagagtgtt ggacccggcg      1200
     attgcttatg caatctcagc gacagtcacg gttcagagtg atcctgattt agataccgac      1260
     tatgataatc tgattcagtc actaaaagaa cttcaagacc aagctatcgt tcgaccggcc      1320
     aaccactcat ccaacagact ttcggaggaa acccgaaaac tgctgaacaa aagacgtttt      1380
     atggatagaa atgatcccca attcaaatct atttcagata aatgtcgtga agcagttcag      1440
     aaagaccatg aagcttttgc cagtactcgc cttctatctg ctgcgaacca gaaaaagagt      1500
     ttgaaaagag ttgctaggga catcaacgaa tataagtcag ttatcccatg cctcaaatca      1560
     acctctactg gtgaaagaat cacttccagg gtgaaaatgg agcaggagat tgagaagttc      1620
     tacacggagc tcttcaaaag cgctgtgagc aactctcaaa catcttcaat acccgccacg      1680
     gcaactccac cgccgtttct cccggaagaa attcgtcatg ttctccgttc cttcccgaat      1740
     ggtaaagctg caggccaaga caaaatcagt gcagatttct tgaaatcttg ccacgataac      1800
     gtcattgacc tgataacgga tcgattcaac aggtacctcc acagcagaaa tgtaccgaaa      1860
     ccctggaaaa cctccaaaac cactctcatc ttcaagaaag gtgaccgtga gaatttggaa      1920
     aactataggc ccatctgcct actacccgta ctctacaaag tattcaccaa gtgtttgctg      1980
     aatagaatgc gaagatccct tgatgaggct caacctgtcg agcaggccgg attccgacgg      2040
     tctttctcta cgatcgatca catccactcg ctccaaagac ttcttgaagt cggcagggaa      2100
     taccagatcc cactgacact tgtcttcata gatttcaaga aggcatttga cagtgttgaa      2160
     caccaggcaa tctggaaaag tctcgacgag caaggtgcag atggagccta tattgatcta      2220
     ctgaaagagt gttataaaaa ttgtaccaca aattttaccc cattccacag gccagtcgca      2280
     gtacctgtga ccaaaggagt tcgacaagga gatcccatct ctccgaatct cttctccgct      2340
     tgcctcgaac acgttttccg aaagctttcc tggattgaat tgaaaggaga agctgaggat      2400
     tacgatacga tccctggaat gagagtgaat ggcagaaatc taacgaacct cagatttgct      2460
     gacgatattg tgctcatcgc caatcatccg aatattgcca gcaaaatgct ccaagaactc      2520
     gtacaaaaat gctctgaagt aggtctcgag atcaatactg ggaagacgaa agtcttgcga      2580
     aaccgattcg ctgaccccag taaagtctac ttcggtagcc cttcccccac cacccagctc      2640
     gacgacgtcg acgagtacat ctacctcggt cgtcaaatca acgcccaaaa caacttgatg      2700
     ccggaaatcc accgaagacg tcgagcagcc tgggctgcat tcaatggaat caagaacacc      2760
     accgactcca tcaccgacaa gaagattcgt gcgaatctgt tcgactcaat tgtccttcca      2820
     gcgctcacct acggttcaga agcctggaca ttcaccaaag ctctatccga acgagtacga      2880
     atcacacatg cctccctaga aagacggctt gtgggaatca cactcactca acaacgagaa      2940
     cgagatctcc atcgagaaga cattcgtacg atgtctctag tcagggatcc gctcaatttc      3000
     gtgaaaaaga gaaagctagg atgggctgga cacgttgcga gaaggaaaga cggaagatgg      3060
     accacgttga tgacagaatg gcgcccatat ggatggaaaa ggcctgttgg aaggccgccg      3120
     atgcgatgga ctgattcgct gcgaaaggag atcaccactc gtgacgcaga cggagaagtc      3180
     atcaccccct ggtccactat agccaaggac cgaaaacaat ggcttgctgt gatccgcagg      3240
     aataccacga attcctgaag aacggatcgt ctaagtatct aagtatctaa g               3291
//
ID   CEREP3      repbase;    DNA;    CEL; 302 BP.
XX
AC   .
XX
DT   01-DEC-1999 (Rel. 4.11, Created)
DT   01-DEC-1999 (Rel. 4.11, Last updated, Version 1)
XX
DE   CEREP3 dispersed repetitive element - a consensus.
XX
KW   CEREP3; dispersed clusters.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-302
RA   V V., Jurka J.;
RT   "CEREP3.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   This element does not have any noticeable hallmarks of known
CC   retroelements or DNA transposons. There are about 100 copies
CC   of CEREP3 in the C.elegans genome. They are ~73% identical
CC   to the consensus sequence.
CC   There are multiple clusters composed of tandemly repeated
CC   copies of CEREP3 in the genome.
CC   The most conservative portion of the repeat is a 70-bp
CC   5' terminus.
XX
SQ   Sequence 302 BP; 122 A; 41 C; 34 G; 105 T; 0 other;
     tttggccaca gtggggactc gaaccccggt cttgtgattg gtagtcggcg aaaatcccac        60
     tgcgccattt ggacaaaatt tttgaaaatt ctgaaaattg atgaaaatta taaaaaatca       120
     cagttttaag ttaaatttta aatttttata tttaaaaaaa tcaaatttta aactttttta       180
     aaattaaaat tttgaaacta aattttcgac attttctaga aatttttgag tttctaaaac       240
     tttaaaattc gaattctaca tctttaaatt acccaaaaac attaaaaaac caaaaaaaaa       300
     at                                                                      302
//
ID   Tc3         repbase;    DNA;    CEL; 2337 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   An active DNA transposon - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Tc3;
KW   mariner/Tc1 superfamily; transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2337
RA   Collins J., Forbes E., Anderson P.;
RT   "The Tc3 family of transposable genetic elements in
RT   Caenorhabditis elegans.";
RL   Genetics 121(1), 47-55 (1989).
XX
RN   [2]
RP   1-2337
RA   Kapitonov V.V., Jurka J.;
RL   Direct Submission to Repbase Update (MAR-2003).
XX
CC   [2] (Consensus)
XX
CC   Tc3 is an active mariner/Tc1-like DNA transposon [1]. There are
CC   17 copies of Tc3 in the sequenced C. elegans genome. They are
CC   ~99.84% identical to the consensus sequence. Tc3 copies are
CC   flanked
CC   by the TA traget site duplications. The preferential target site
CC   is aTAt [2]. Tc3 has 467-bp terminal inverted repeats.
CC   Tc3 encodes a 329-aa Tc3p transposase (2 exons, positions
CC   720-1136 and 1185-1757).
CC   Tc3:
CC   MPRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKA
CC   LSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSGVIVRQKLRPAPLLSAD
CC   HKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDGCRYYWRDLRKEPMVFSRRNFGGGTV
CC   MVWGAFTEKKKLEIQFVSSKMNSTDYQNVLELELSKYLRHYSRKDFRFQQDNATIHVSNS
CC   TRDYFKLKKINLLDWPARSPDLNPIENLWGILVRIVYAQNKTYPTVASLKQGILDAWKSI
CC   PDNQLKSLVRSMEDRLFEIIRTQGNPINY.
XX
SQ   Sequence 2337 BP; 700 A; 445 C; 490 G; 702 T; 0 other;
     cagtgtggga aagttctata ggaccccccc taatttgaag gtttgaggaa cttccgaaaa        60
     ttttttcgaa aaactgctaa tgccgttcgt ttttaaattg aaaaaaacct atatacattt       120
     ttttccagaa gtttatctca aaaactgagg tcgcgctgga aaaaacgtca aaatccagtg       180
     tgaaacttct ataggacccc ccgttttttt tcacgatttt tactaaaatc aacagatttt       240
     ggaatttttg acaaagctca aatcaagttt gagttagaaa tgagttcaga taagcagttt       300
     tgactttaaa aaattaatac gaaatgttct cgtgggatct ccagactggt tctgattctt       360
     ccgatctttg atgttcaagt ctgtttcaag cttcctggtg ctctcggtaa tgccaaaact       420
     tgataaactc tctttaacaa gttcctacta aaattcctag cacgcacttt agatgtttcg       480
     actgtgtagt caagctgatt tggcaaaata tgcagcagga aacaatggaa ggcttatcag       540
     gaatcaaatc gtttttcttt gattacaagg ttccatggga ccaatatttc aagttaaatt       600
     gtccctcaca gatgttattt actatttttt gcgtgaatta ttaaatgtgg aattgtggca       660
     tgtgttgtgg cacacatata gaggctggaa agcttacttc gaaagcagtc taacttgcaa       720
     tgcctcgagg atctgccctt tcggacactg aacgcgctca gctggatgtt atgaaattgc       780
     tcaatgtgtc cctgcatgaa atgagtagga aaatttcccg ttctcgacac tgtattcgcg       840
     tgtatctgaa ggatccggtg agctacggta catctaaaag agctcctcgt cgcaaagctc       900
     tctccgtgcg tgacgaacga aatgtgattc gtgctgcctc caactcctgt aagacggcaa       960
     gagatattcg caatgagctt caattgtctg cttcaaaaag gaccatcctc aatgtcatca      1020
     aacgatctgg tgtaatcgtt cgtcagaaac ttcgccctgc tccgttactc tctgcagacc      1080
     ataaactcaa gcgattggaa tttgctaaga acaatatggg aacgaattgg agtaaagtga      1140
     gaatttaaaa aagcaagagt gaataattag gatcattgtt ttaggttgtc ttctccgatg      1200
     aaaagaaatt caatctcgat gggcctgacg gttgccgcta ctattggcgc gatttgcgca      1260
     aggaaccaat ggttttttcg agacgtaatt ttggaggagg aacggtgatg gtttggggag      1320
     cgttcacgga gaagaagaag cttgagatac agttcgtcag tagcaagatg aacagcactg      1380
     actatcagaa cgtcttggaa ctggagctct ccaaatatct tcgtcactac tccagaaaag      1440
     actttagatt tcagcaggat aatgcgacaa tccatgtgag caactcaacc cgcgactatt      1500
     tcaagctcaa gaagatcaac cttcttgatt ggccagctcg aagtcctgat ctcaatccaa      1560
     tcgaaaattt gtgggggatt cttgtccgta tcgtgtatgc tcagaacaag acttacccaa      1620
     cagttgcatc gttgaagcaa ggaattctcg acgcttggaa gtctattccg gacaaccagc      1680
     tgaaaagttt ggtcagatca atggaggaca gactgtttga gatcatccgc acacaaggaa      1740
     acccgattaa ctattgatcc tttcttgatt ttagtatatg aatgttctgt tgttgatcaa      1800
     aaataactgc aacttgttaa tacgctgttt ctgactggtt tcttggggat ggcgtaaaaa      1860
     tgtttatggt gtgtgtgcta ggaattttag taggaacttg ttaaagagag tttatcaagt      1920
     tttggcatta ccgagagcac caggaagctt gaaacagact tgaacatcaa agatcggaag      1980
     aatcagaacc agtctggaga tcccacgaga acatttcgta ttaatttttt aaagtcaaaa      2040
     ctgcttatct gaactcattt ctaactcaaa cttgatttga gctttgtcaa aaattccaaa      2100
     atctgttgat tttagtaaaa atcgtgaaaa aaaacggggg gtcctataga agtttcacac      2160
     tggattttga cgttttttcc agcgcgacct cagtttttga gataaacttc tggaaaaaaa      2220
     tgtatatagg tttttttcaa tttaaaaacg aatggcatta gcagtttttc aaaaaaattt      2280
     tcggaagttc ctcaaacctt caaattaggg ggggtcctat agaactttcc cacactg         2337
//
ID   HELITRON2_CE repbase;    DNA;    CEL; 5514 BP.
XX
AC   AC006730;
XX
DT   25-MAY-2001 (Rel. 6.04, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   HELITRON2_CE is a Helitron DNA transposon.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; HELICOP2;
KW   HELITRON class; HELITRON2_CE; helicase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5514
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON2_CE.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
RN   [2]
RP   1-5514
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
DR   GenBank; AC006730; Positions   23891   18378.
XX
CC   HELITRON2_CE is a HELITRON-like DNA transposon.
CC   904-aa protein which is putatively involved in proliferation
CC   of HELITRON2_CE copies. There are about 100 nonautonomous
CC   elements
CC   in the genome, and they are 96% identical to HELITRON2_CE.
CC   These elements are ~500-1500 bp long. In many cases,
CC   HELITRON2_CE forms 7-9 kb minisatellite-like clusters composed
CC   from a ~200bp portion of HELITRON2_CE.
CC   HELITRON2_CE encodes a 904-aa protein, CEHEL2p, composed of
CC   the rolling-circle initiator and DNA helicase domains.
CC   CEHEL2p is encoded by 7 putative exons.
CC   CDS: 1834-1922, 1973-2235, 2431-2988, 3112-3296, 3657-3970,
CC   4021-4294, 4343-5374.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="CEHEL2p"
FT                 /translation="MNEFSQKTDFPSTSDSQEPVSKRTRSRFKSDSSGAER
FT                 KRKQRGKESSEEREARHQYDQDRKRKKKASESKDELKVLLLKDRERKARER
FT                 REAKGISDGPNYLGPMSKTCDHCKAVFFESKNFQSNIRQFNSAFSMASMGA
FT                 HLDIPKGHGPYCYRIHGQVYHLAGPLHPEPGGRPSYGQIYILDTAQAIEER
FT                 LGNPANSKCDPQLMAELTKLISTRNPYAKAYKMMAEVEEKENTDALKEGRV
FT                 AEEVRLIFDISTTKDRRCYNVPVSNEVAVVFVGEDQDIPASRSLAIHPRGG
FT                 GLTAIRDIDKISVKYLFKYVYKGHDRAALNIIRSRLKEGIVDEIKAHLDAR
FT                 YVCAPEAIHHLFGFKIERKSDTDIRTVIDDDGVPVVYPTFVEAAKARGLLK
FT                 DDSEYLKSLKEWIGCSVPAALRSLFSSILLFNEVHEPQVLWDTVKRDLSED
FT                 YRHAGARDDEAEALAYFDISSRLHRGGKAFNDYVPEPSMHPTDIYLNTSDP
FT                 SQCAAEGVRLFQTLNSDQKYVFERIVGALHDPTLPRLFFLDGPGGSGKTYL
FT                 YIALYNMIIGENKMAACTAWTGIAAHLLPGGRTMVSLLKLNIHDRCESSLH
FT                 RRQLKDARELANTDVFICDEASMIPKTALNTFDSLLRDITQVDQPFGGKIV
FT                 ILGGDFRQILPIVEKGSRADQVDACIKSSPLWNQFETLRLHSNMRVTTNDT
FT                 EWMNFLLGVGDGSLNDSESKVQIPFSLCDGNIVEKVFGDVIDPSTSDPCEN
FT                 VILTPKNVDVTLLNEDVHSRGIGEERIYLSRDEIVTDDPADHMHYPTEFLN
FT                 KMTPSTLPPHVLKLKKGSVVMLLRNLDVSGGLCNGSRFVVESLGRRTIGCR
FT                 FACGERKGKFVIIPRIECYHDKNLSFKLKRTQFPVRAPDGRITNIVFTEIL
FT                 "
XX
SQ   Sequence 5514 BP; 1653 A; 939 C; 1195 G; 1727 T; 0 other;
     tcatttacta tatataaagc gcgtgtcctt ccgtccgttt gtagtttgta gtttgatctt        60
     tgatctttca actctctttt ctgtagttgg aaaaggtatt gggttaagag ttgccggggg       120
     ataatgtcaa ggtactgtag tagtactgta ggagtactgt aggtatacgg tagggttact       180
     gtagattagg aaaaattgag tttttgtcta cagaagaggt attgggttgg gagttggtga       240
     gggataatgt caaggtactg tagtagtact gtaggagtac tgtaggtata cggtagggtt       300
     actgtagttt aggaaaagtt gagttttcgt ctacagaaga ggtattgggt tgggagttgg       360
     tgagggataa tttcaaggta ctgtagtggt actgtaggag tactgtaggt atacggtagg       420
     gttactgtag ttaggaaaag ttgagttttc gtctacagaa gaggtattgg gttgggagtt       480
     ggtgagggat aatttcaagg tactgtagtg gtactgtagg agtactgtag gtatacggta       540
     gggttactgt agttaggaaa aatttgaatt ttaaccattt gaagagatat tgggttggga       600
     gttggtggag gataatgtca aggtactgta atggtattgt tggagtactg taggagtacg       660
     gtagggttac tgtagttatg aaaaatgtga attttaacca tttgaagaga tattgggttg       720
     ggagttggtg gaggataatg tcaaggtact gtaatggtat tgttggagta ctgtaggagt       780
     acggtagggt tactgtagtt atgaaaaatg tgaattttaa ccatttgaag agatattggg       840
     ttgggagttg gtggaggata atgtcaaagt actgtaatgg tactgtagga gtactgtagg       900
     attatggtag ggttactgta gtcaggaaaa aatttgaatt ttaactcaag aagggtccca       960
     ttggccccgc ccccttggtt ttaaattttt ttgaaaacat tttggtggga attcaaattt      1020
     cacttttata aaaacatttt gacgggaatt caaattttaa ttttttgaaa acattttggc      1080
     ggtaattcaa attttaattc tttgaaaaca ttttggagga aaattgatgg aaattttctt      1140
     aacttctaaa agttaagaaa ttgtttaaag ttgagaaacg tctgaaacct tctgaaatcc      1200
     actgaatgca atgtcctaga aaattttgtt aagttcatga gacttcaaat taaaaaaaaa      1260
     ttcgaacgac aaaatgcctc attgggtgga gtaattttgt cgactccagc ctctctctgc      1320
     agcatttcag gatgttctat atttatttta gtaaattaga ttgttttgtt gaccggaatg      1380
     tcaaaaactt ttctaaatac ataatttgac tgtatttttt taacacactc tacgaaattt      1440
     ataatttgtt tttctgtttt cgttatttac tgtacattaa ttacgaaatt caagatttgt      1500
     ttttatgttt ttgttgttta ctgtattagt gaactgttgt ttacagtagt gtttacagta      1560
     ttttttgttt actgtacatt aattacaaaa tttaaaattt gtttctctgt tttaggttgt      1620
     gttttttgaa aaaaaatggt attatacttt tttgccgaac tacagttttc aattatctat      1680
     agtacgattt tggttattac aaaaaaaaat cttcccctgt tttatctgtt ctatcgaaaa      1740
     aaaatttctt ttctcttcat tttttcgttt ttttttaaat tattgtttgt gatagtcaat      1800
     attttacaga ggaatccgaa gaattattaa ctatgaacga attctcacaa aaaactgatt      1860
     tcccttcaac atctgattcc caagagcctg tttcaaaaag gacacgttct agatttaaaa      1920
     ggtaagtttt tattttctaa gtttatttgt tagtaaaata aatgttttta gtgatagttc      1980
     tggagctgaa cgcaaaagga aacagcgtgg aaaagagtca tcagaagaaa gagaagcacg      2040
     ccatcaatac gatcaggata ggaaacgtaa aaaaaaagct tctgagtcca aagacgaact      2100
     gaaagtgttg ctactgaaag atagagaacg taaagcaaga gaaagaagag aagcaaaagg      2160
     tatatccgat ggacccaact atcttggccc gatgagcaag acatgtgatc actgtaaagc      2220
     cgtctttttc gaaagtaagt ttttaaataa tatttttaca aatgaacgtt gaattttacc      2280
     atgcagcaaa tttaatttca gatgaagtaa gcggctccac tgatcatatc aacatgtgtt      2340
     gcaattttgg actgacaacc tccatcgatg ataagttcgc cgactatccc gatcgattga      2400
     aggatcttct tctcggagat tcgattgagg caaaaacttc caatcaaata ttcggcaatt      2460
     caactctgct ttttccatgg cttcaatggg tgcccatctc gatattccaa aaggacatgg      2520
     tccatattgc taccgcatcc acggccaagt gtatcactta gcagggcctc ttcatccaga      2580
     acctggagga agaccatcat acggccaaat ttatattctg gacacagctc aagctatcga      2640
     agaaagatta ggaaatcctg caaattcaaa atgtgatccg cagttgatgg cagagctcac      2700
     gaaactcatt tcgactagga acccatacgc taaagcttat aaaatgatgg cagaggtgga      2760
     agagaaagaa aacaccgatg ctctgaaaga aggaagagtt gccgaggagg ttcgactaat      2820
     cttcgacatt tcaactacta aagatcgtcg ttgttacaat gtccccgtat caaatgaagt      2880
     ggcagttgta tttgtcggag aagatcagga tattccagct tcaagatctc tagctattca      2940
     tccaagagga ggaggtctca ctgcaattcg tgatattgat aagatatgtg atccattgac      3000
     atatccataa ggtcataaga tggataacag attcatcgtt ccgtataact cttactttct      3060
     gcttcggtac aatgctcaca tcaacgtcga aatttgtgct ttcattgaag ctgtgaagta      3120
     cttatttaag tacgtgtaca agggacatga tcgtgctgct ctaaacatca ttcggagtag      3180
     actgaaagaa ggaatcgttg atgagattaa agcccacctt gatgctcgat acgtgtgtgc      3240
     tccggaggcc atccaccatc tcttcggatt taagattgag agaaagtctg acacggtata      3300
     tcgactagct gtccatcttc cgggttttca agttgtggta tttccttcaa atgtaacaaa      3360
     ggatcagttg cagtctacgc ctgaaaaaga tacaactctg acagcttggt tcaaaattaa      3420
     caaaattagc gaagaaacag tgcagagtgg ttccatgtcc gattcatttg tcgacgaatt      3480
     gcattacatt gacatgccat cttaattcac attcgatcaa aaagagcgct gctggaaaac      3540
     ccgaaagcgt ggaatccgac aaattggcag aatgtacaca gttgctccca gtgaaactga      3600
     acgttatgtt cttcgcattc ttctactaaa cacaaaagga gctacttctt ttgaggatat      3660
     tcgaactgtc atagatgatg atggagtgcc tgtagtttac cccactttcg ttgaagcagc      3720
     taaggcacgt ggactgctga aggatgatag tgaatattta aaatcgctga aagagtggat      3780
     tggatgctcg gttcctgctg ccctacgatc tttgttcagt tctattctac tcttcaatga      3840
     ggttcacgag cctcaggtat tgtgggatac cgtaaaacgc gatctcagtg aggattatcg      3900
     tcacgcagga gccagagatg atgaagctga agctttggcc tattttgata tttccagtcg      3960
     acttcacagg tagctatcat ctctaaactt atatttatag tggaaatata tgttttcaga      4020
     ggaggcaaag ctttcaatga ttacgttcct gagccttcaa tgcatccgac tgacatctat      4080
     ctaaatacaa gcgatccatc ccaatgtgca gcagagggcg ttcgactatt tcaaaccctc      4140
     aactcggacc agaaatacgt cttcgagcgt atcgtgggag cgctacacga ccctacttta      4200
     ccccgtctct tctttttgga tggtcccgga ggaagtggta aaacatatct gtacattgca      4260
     ttgtacaata tgataattgg agaaaataaa atggtaacta tcaactaatt catttttatt      4320
     cctaacatgt ttttattcca ggcggcttgc acagcatgga ctggaatcgc ggcacattta      4380
     cttccaggag gtcgaactat ggtgtctctt ctcaaattga acattcatga tcgatgtgag      4440
     tcgtcgcttc accgaaggca attgaaagat gccagagaac ttgctaatac cgatgtgttc      4500
     atttgtgacg aggcttcgat gattccaaaa acagctctca acacgtttga ttctcttctt      4560
     cgggatatca ctcaagtcga tcaaccattt ggaggaaaaa tagtcatttt gggcggagat      4620
     ttccgacaaa tccttcccat tgtcgaaaaa gggtcgagag ctgatcaagt cgatgcctgt      4680
     atcaagagtt cgcctctgtg gaatcagttt gagactctac gcctccactc aaacatgaga      4740
     gttaccacaa acgacacgga atggatgaac tttcttctcg gtgttggcga tggttcccta      4800
     aatgattctg aatcgaaagt tcaaatccct ttttctttat gtgatggaaa tattgtcgag      4860
     aaagtttttg gagatgtaat cgacccatca acttctgatc cctgcgaaaa tgtgattctt      4920
     actccaaaaa acgttgatgt cacccttctc aacgaagatg ttcattccag agggatagga      4980
     gaagaaagaa tctatttatc aagagatgaa attgtaacag atgatccagc agatcacatg      5040
     cactacccaa cagaatttct gaacaagatg accccttcga ctctcccccc acatgtgctg      5100
     aaactgaaaa agggatcggt ggttatgctg ctcagaaacc ttgatgtatc gggaggtctc      5160
     tgcaatggat ctcgctttgt ggtggaatcc ttaggacgac gaacaattgg atgccgattt      5220
     gcatgtggcg aaagaaaagg aaaatttgta atcatccctc gaatcgaatg ttatcatgat      5280
     aagaatttgt ctttcaaact gaaacgaact caattccctg ttcgagcccc tgacggccga      5340
     atcacaaata ttgtttttac cgaaattctt taaacgaatg ttttagaaac cttgatttga      5400
     tttaataaaa attatttaaa aaaaattttt ttcaaaattt ttcacttcct tatttttaaa      5460
     ataaaatttc aaacgaccag tcgcggccgc gccggaggcg cggtcagcgg ctgg            5514
//
ID   CELE14B     repbase;    DNA;    CEL; 187 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE14B nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Interspersed Repeat; Nonautonomous; CELE14;
KW   CELE14B; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-187
RA   V V., Jurka J.;
RT   "CELE14B.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   CELE14B is a second major subfamily of CELE14 repeats.
CC   CELE14B and CELE14A are 89% identical to each other.
CC   CELE14B is flanked by 30 bp-long imperfect terminal inverted
CC   repeats and 6 bp-long duplications of non-specific target sites.
CC   CELE14B copies are ~91% identical to the consensus sequence.
XX
SQ   Sequence 187 BP; 50 A; 46 C; 38 G; 53 T; 0 other;
     cacgtggtgc caggctgtcc cattacggtt tgatctacaa aaaatgcggg aatttttttc        60
     ccaaaaaatt gtgacgtcag cacgttctta accatgcgaa atcagttgag aactctgcgt       120
     ctcttctccc gcattttttg tagatctacg tagatcaagc cgaaatgaga cactctgaca       180
     ccacgtg                                                                 187
//
ID   CELE14A     repbase;    DNA;    CEL; 177 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE14A nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Interspersed Repeat; Nonautonomous; CELE14;
KW   CELE14A; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-177
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
RN   [2]
RP   1-177
RA   V V., Jurka J.;
RT   "CELE14A.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [2] (Consensus)
XX
CC   Original classification of CELE14A as a Mariner-related
CC   nonautonomous
CC   DNA transposon [1] is wrong since CELE14A generates 6 bp-long
CC   duplications of non-specific target sites. CELE14A has 51 bp-long
CC   terminal inverted repeats; its copies are ~92% identical to the
CC   consensus sequence.
XX
SQ   Sequence 177 BP; 45 A; 40 C; 41 G; 51 T; 0 other;
     cacgtggtgt caggctgtct cattgcggtt tgatctacga aaaatgcggg aatatttttc        60
     cagaaaaatt gtgacgtcag cacgctctta accatgcgaa atcagatgag atgtctgcgt       120
     ctcttctccc gcatttttcg aagatcaaag cgaaatggga ctttctgact ccacgtg          177
//
ID   RC14        repbase;    DNA;    CEL; 169 BP.
XX
AC   L00589;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Caenorhabditis Rc14 repetitive element.
XX
KW   RC14; Repetitive element.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-169
RA   Ruvolo R.V., La Volpe A., Naclerio G., Coulson A., Levitt M.A.;
RT   "Tandem repeats and SINE-like elements associated with insertion
RT   sites of the Tc2 transposon of C. elegans.";
RL   Unpublished (1992).
XX
RN   [2]
RP   1-169
RA   Naclerio G., Cangiano G., Coulson A., Levitt M.A., Ruvolo R.V.,
RA   LaVolpe A.;
RT   "Molecular evolution of clusters of satellite-like DNA sequences
RT   in Caenorhabditis elegans.";
RL   J. Mol. Biol0-0 (1992)In press.
XX
DR   GenBank; L00589; Positions     104     272.
XX
SQ   Sequence 169 BP; 38 A; 55 C; 19 G; 57 T; 0 other;
     ctcccatgct tacatttccc atgcctacaa ttcccatgct tacacatgtt cccgtacata        60
     caaatgttcc catgcttaca ctcagtagta acagtgttcc catgcgttca gctcattttt       120
     tctcgttccc atgctacatt tcccatgctt acacgtattc ccgtacata                   169
//
ID   HELITRON1_CE repbase;    DNA;    CEL; 8484 BP.
XX
AC   .
XX
DT   25-MAY-2001 (Rel. 6.04, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   HELITRON1_CE is a Helitron DNA transposon, a consensus sequence.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; HELICOP1;
KW   HELITRON class; HELITRON1_CE; helicase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-8484
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON1_CE.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
RN   [2]
RP   1-8484
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [2] (Consensus)
XX
CC   HELITRON1_CE is a HELITRON-like DNA transposon. It encodes a
CC   1466-aa protein, CEHEL1p, composed of the rolling-circle
CC   initiator
CC   and DNA helicase domains.
CC   There are several copies of HELITRON1_CE in the genome, they are
CC   ~99% identical to the consensus sequence.
CC   Approximately 2% of the C. elegans genome belongs to molecular
CC   fossils of nonautonomous elements transposed recently (<10 Myrs)
CC   by autonomous HELITRON1_CE-like elements. HELITRONY1_CE and
CC   HELITRONY2_CE are examples of these non-autonomous elements.
CC   Minisatellite-like repeats RCA1, RCD1, RC35, RC123, RCC9,
CC   reported
CC   previously (Naclerio,G. et al., 1992, J. Mol. Biol. 226,
CC   159-168),
CC   are portions of HELITRON-like transposons.
CC   The CEHEL1p protein is encoded by 9 putative exons.
CC   CDS: 1930-2087, 2135-2412, 2533-3428, 3476-3799, 3850-4520,
CC   4581-5207, 5254-5521, 5574-5762, 5814-6803.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="CEHEL1p"
FT                 /translation="MDNELTSRPDSIMDTEPTTLPDSAMDTKPTNLPDFPS
FT                 TSQEPVSRRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKR
FT                 ASMSEEEKAEMKYKKRVWMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNC
FT                 NARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELRHLLLDDSSHAR
FT                 NFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDPG
FT                 QRPAFGQIYILDTDQATDERLGNPANADCDPAVMAELSSLLLRTNPYAQAY
FT                 KMMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLPQANEVAVVF
FT                 VGEDDDVPTTRSLAVHPRGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHPD
FT                 LEKRPSEKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKI
FT                 EQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPGRRIVLPSSFPGSPRAM
FT                 VQNFQDAMAIVSKFGKPDIFLTFTCNPAWTEISENLGPRQSASDRPDLIAR
FT                 VFKLKVDALFDDLLNRDILGHVAAYISVFEWQKRGLPHVHMLLTMAENSKP
FT                 RTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQNPHSPCMVDGHC
FT                 SKRYPKDFHPSTTLNVDGYPGYRRRDDGRYVEYGTQHLDNRRVVPYNKWLL
FT                 LRYNAHMNVEICGFIEAVKYLFKYVYKGHDRAALNIIQNVRGDGNVVDEIR
FT                 EHLDARYVCAPEAIHHILGFKLEKKASVTTQQLESSSQTDTTLTAWFKINQ
FT                 KSKDIAESGNIPSTFVDSRQFFYMDMPTHFTFVKKDGWKVRGRGTRQIGRM
FT                 YTVPPYETERYALRILLLNIKGATSFEDLRTVLDENNVPVVYATYVEAAKA
FT                 QGLLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILFNEVHDLNALWDAVKW
FT                 DLSEDFRHAGAGKEEAEALAYFDIESRLQRVGKRFDVTKPSINPPPIDLDT
FT                 VNPAQCASEGNRLLATLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGK
FT                 TYLYITLYNICVGRGLKVACTAWTGIAANLLPLGRTSASLFKLDIRNQCKS
FT                 SLHQRQLKEAQELAENDVFIWDEASMVPKTALDTVDVLLRDLTKIDQPFGG
FT                 KILILGGDFRQILPVVERSSRADQVDACIKRSPLWTEFQILHLISNMRVTS
FT                 GDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVIDPTTSD
FT                 PCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPT
FT                 EFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHS
FT                 LGCRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQ
FT                 GQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIVKSSSNIVTNIVFNEV
FT                 L"
XX
SQ   Sequence 8484 BP; 2476 A; 1919 C; 1648 G; 2441 T; 0 other;
     tcattactta tatataaaaa aatagtgtgg gtctgtccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgacgtcac ccctaaagtc actgagagtt gtgggcgggg ccagtcaccc       120
     ttcgtggcga gacccatcgt tgcgagaccc ttcgtggcga gacccatcgt ggcgagaccc       180
     atcgtggcga gacccatcgt ggcgagaccc atacattttg gcgggaattt aaattttctt       240
     tgaaattttt cggcgggaat tcaaattttc tgtgaaaatt tttggcggta gctcaaattt       300
     tctgaaacat ttttggcggg aattcaaaat ttctctgaaa atttttggcg ggaatttaaa       360
     ttttctttaa aattttttgg cgggaattca aattttctgt gaaaaatttt ggcgggaatt       420
     caaattttct gaaaaatttt tggcgggaat tcaaattttc tctgaaaaat tttggcggga       480
     atttaaattt ccttcaaaat tttttggcgg gaattcaaat tttctgaaaa atttttggcg       540
     ggaattcaaa ttttctctga aaaattttgg cgggaattta aatttccttc aaaatttttt       600
     ggcgggaatt caaattttct ttgaaaattt ttggcgtgaa ttcaaatttt ctgaaacatt       660
     tttggcggga attcaaattt tctctgaaaa tttttggcgg gaattcaaat tttctttaaa       720
     attttttggc gggaattcaa attttctgtg aaaaattttg gcgggaattc aaattttctg       780
     aaaaattttt ggcgggaatt caaattttct ctgaaaattt ttggcgggaa tttaaatttt       840
     ctttaaaatt ttttggcggg aattcaaatt ttctgtgaaa atttttggcg ggaattcaaa       900
     ttttctgaaa aatttttggc gggaattcaa attttctctg aaaatttttg gcgggaattt       960
     aaattttctt tacaattttt tggcgggaat tcaaattttc tgaaaaattt ttggcgggaa      1020
     ttcaaatttt cagtgaaaaa ttatggcggg aaattcaaat ttttagagaa attttgtcgg      1080
     agtagtcaaa tttaactttg tttgacagaa aaaaaaagta tgaaggggaa gatagtttga      1140
     accacagaag gttcacacca aattcccgca cacaaccaat gcgacatacc ggcacatttg      1200
     tttagaattt aataaaccta tagaagagga aaacttcatg caataaactt cgagaatctt      1260
     ctagaaattt cgaaaaactt ctagatatct cggattacgt aacacttgac gacgtcacac      1320
     atgatgagga cattaagtaa acgtcacagg ctgaacccaa tataattttc agaaaattct      1380
     ggaaccttct agaattttgg agaaacttcc agaaaattct gatgacgtca caatcactgg      1440
     cgtaacaaaa aataagtcac agattatgac gtcacatatg atgacaccta tatagtctca      1500
     cattcggaaa aaaataggtg atgacgccaa atatatcagc gtcacagaat gtgacgtcat      1560
     aggctccgcc cattacagta aaagaaactt ctggaatctt ccagaagttg cagaaaaaga      1620
     agagaatgtt ccaataacgt cacaaaagat gacgtcactg ataaagacat cacaggaact      1680
     acccattaat ataatcaaga agattctaca accatctaga aacttctgga tttttcaatg      1740
     tagtgtgcaa aatttaaatt ttgactattt cattgtgcaa tttttaattt atattattac      1800
     aagtttaaac tatattaaat ctgtccttct aaaacccaat tcgtttcaag acccaaaact      1860
     tctagaatct tccaaaaaaa ttctatataa ggagaagaaa attatcattt tctcattatt      1920
     aatcaacaat ggataacgag ctaacaagtc gacccgattc aataatggat acggaaccaa      1980
     caactctacc cgattcagca atggatacca aaccaacaaa cctgcctgat ttcccttcta      2040
     catcccaaga acccgtctct aggaggacac gttccagaac attaaggtaa ggatcttgaa      2100
     tgctcgtgga attttaccaa taagcagttt tagtgacaac tcaaatgctg tatggaagag      2160
     agaacgtcgt tcaagagaaa cttcgcaaga atcagaatca agactcagga tggattggga      2220
     aagaaaaaag gaaaaacgag cttcaatgtc agaagaggaa aaggctgaga tgaaatataa      2280
     aaaaagagta tggatgaaga aaaaaagaaa tgaagtagca aaaacacacg atacgtcatc      2340
     tgttgccaat cccaactacc ttggaagcat gagatgtgtg tgcaagaact gcaatgccag      2400
     attctttcaa ggtatacatt ttttcaaagt ttagtgaact tctacttctt atttccattc      2460
     tgagtttcag attggttttt tttcataact aataacatat actagcatca tacagaaatt      2520
     taatgtttca ggagaggtgt cctcatccaa cgatcatatc aatatgtgtt gctacttcgg      2580
     attaacaacc acacttcaag atcgattctc caactaccca gatgaactac gacatcttct      2640
     cctcgatgat tcttctcacg cccgtaactt ccagaagaac atccgacagt ttaattcatc      2700
     gttcgcaatg gcatcgatgg gtgcacaact tgatgttccg agaggccgcg gcccatactg      2760
     cttcaaaatc cacggtcaag tttaccattt tgcgggacca cttcacccgg atccaggcca      2820
     gagaccagca tttggacaga tctacatcct ggacactgat caagcaacag acgagaggct      2880
     tggaaatcct gccaatgccg attgtgatcc tgctgttatg gctgaattga gcagtcttct      2940
     gttgagaacc aatccatatg cacaggcata caagatgatg gctgaagttg aagaaaaaga      3000
     aaattctgaa gctgcaaagg aaggacgaca tccgggatgc gttcgactga tcttcgatat      3060
     ttcgacaact aaggatccac gacgttataa cttgccacaa gcgaatgaag tcgcagttgt      3120
     ttttgtgggc gaagacgatg acgtgccaac cactcgctct ttggctgttc atccaagagg      3180
     aggaggactt aagacgattc gtgatatcga taggatctgc gatcctctca catatcctgt      3240
     attgtttcca aatggaaccg acggatggca tcctgacttg gaaaagagac catcggagaa      3300
     gaaacaagga aggattactc agaagatgta ctacagttac ctgctcatgg agagatcagg      3360
     agttttcaat ccactgcatc acgggcgtgc cctgtttcaa cagtttgcag tagactcatg      3420
     ggtaaaggta agaatacatg atctcatgtt cacaaaataa tcatgttttt gcagatcgag      3480
     caaaacaggc taaactatca tcgaactcat caagttgatt tgaaagccgc caactacaat      3540
     gcggttcagg attatattgc tggagatact gatgtcccag gaagacgcat cgttcttcca      3600
     tcatcttttc cagggagtcc ccgagcaatg gtccaaaact ttcaagacgc gatggctatt      3660
     gtctcgaagt tcggaaagcc tgatatattt ttaactttca cgtgtaatcc tgcatggaca      3720
     gagatttctg aaaacctcgg tccgcgacaa tctgcatctg atcgtccaga ccttattgcc      3780
     cgtgtcttca agctaaaagt aagttgaaga tctatattta actcatcact ttcttcattg      3840
     tgttccaggt agatgcgctg tttgacgatc ttctaaatcg ggatattctc ggacacgttg      3900
     ccgcatacat ttccgtgttc gaatggcaaa aacgaggtct tcctcatgta cacatgctgt      3960
     taactatggc agagaactca aagccacgaa cctcggagga catcgacaag attgtgcaag      4020
     ctgagattcc aaatcctgac aacgagccag aacttcatcg cattgtgacc accgccatga      4080
     tgcatcgtcc atgtggtgct caaaatcctc actcgccatg catggttgat gggcactgct      4140
     cgaaaaggta tccgaaggat tttcatccta gcaccactct caacgttgat ggatatcccg      4200
     ggtatcgtcg aagggatgat ggacgatatg tggaatatgg cacccaacat ctcgataaca      4260
     ggagagttgt tccatacaac aaatggcttc tgctccgtta caatgctcac atgaatgtcg      4320
     agatttgtgg attcatcgaa gctgtaaaat atctcttcaa atatgtctac aaaggacatg      4380
     accgtgctgc actcaacatc atccaaaatg tacgtggaga tggaaatgtt gttgatgaga      4440
     tccgagagca tctagatgct cgatacgtct gtgctcccga ggcaatccac cacatcttgg      4500
     gattcaaact ggaaaagaag tccgatacag tttattgact cgctgtgcat ctcgaaggat      4560
     tccaaacgat ctactttaga gccagtgtca ccacacaaca actcgaatct tcatcacaaa      4620
     ccgacacgac tctcacagct tggtttaaga tcaaccaaaa gagcaaggat attgcggaga      4680
     gcgggaacat cccttcgaca tttgttgatt cacgccaatt cttctacatg gatatgccaa      4740
     cgcacttcac ctttgtgaaa aaggatggct ggaaggttcg aggaagaggc acaaggcaga      4800
     taggccgaat gtacactgtc ccaccatacg aaaccgagag atacgcactt cgaattcttc      4860
     ttttgaacat caaaggagcg acgtcattcg aagatcttcg tactgttttg gacgagaaca      4920
     atgttccagt ggtatacgca acttatgtgg aagcagcaaa agctcaagga cttctgaatg      4980
     atgacagcga atatttgaag tctttgaaag agtgggctgg atgctcagtg cccgcagctc      5040
     ttcgctcaat gtttgtcgct atcattcttt ttaacgaagt tcacgatctg aacgcacttt      5100
     gggatgccgt gaagtgggat ctttctgagg attttcgcca tgctggagca gggaaagaag      5160
     aggctgaggc acttgcatat tttgatatcg aaagtcgcct tcaaaggtat cttttgagct      5220
     tttttcaaaa gtagattata atatttttcc agggttggaa aaagattcga tgtcaccaaa      5280
     ccatctatca atccgccacc aatcgatctc gacacagtca accctgctca atgtgcatca      5340
     gaaggcaata ggctccttgc gacactcaat gatcaacaga aacgtgcagc tgaccagatc      5400
     cttgctgcat tagatgatgc ctcgctaccc cgtcttttct atttggatgg gcctggaggg      5460
     agcggaaaga cttatctcta catcactctg tacaacatct gtgttggaag aggactgaag      5520
     gtaaactttc aaccaaacat actaaagtta tttcaatact gcatattttc aggtagcgtg      5580
     tacggcgtgg acaggaattg cagccaattt actcccactc ggtcgaacat ccgcttccct      5640
     tttcaagctt gatattagaa atcaatgcaa gtcttctctt catcagaggc aattgaaaga      5700
     agcacaagag ctagcggaga acgacgtttt catttgggat gaagcatcaa tggttcccaa      5760
     ggtattagag tgattctgat cgtactaatc aaatcattca ttcaactttc agacagccct      5820
     cgacacggtc gatgtactgc ttagggatct cacaaagatc gatcagccat ttggtgggaa      5880
     gatcctgatc ctcggaggag actttcgcca aatcctacct gtggtggaga gaagctctag      5940
     agctgatcaa gtagacgcat gcatcaaaag atcaccacta tggacagagt ttcaaatttt      6000
     gcatctcatc tcaaatatga gagtaacatc tggagactcg gattggatcc aattcctcct      6060
     caatgttggc gatggatctg caaatgactc tgattcaaag gttacactcc cactctctgt      6120
     catgtgcgat cacaacatcg tcgaggaagt gttcggagca gttatcgatc caaccacgtc      6180
     tgatccatgt gacaacgtca tccttacacc taagaacgtc gacgttgctc aactgaatga      6240
     cgatgttcac aatcgaatgg ttggcgagga aagaatctat ctgtcacgag atgaagtgat      6300
     cgtggaacat caagcggata ctatgcacta tcccaccgag tttctcaaca agatgtcccc      6360
     atcatctctt cctccccata ttctcaagct gaagaaaggc tcagtgatca ttctgctcag      6420
     gaatctcgat gtttccgctg gcctttgcaa tggttcccgt ttcattgtcg aaacattggc      6480
     cagtcactca cttggatgtc gctttgcaac tggcgagagg aaaggacatt tcacaatcat      6540
     tccaagaatc gattgctatg atgataagaa catctctttc caactcaggc gcacacagtt      6600
     cccagttcgc ttatcatttg cattatcgat caacaaggcc caaggacaat ccttttctaa      6660
     aatcggtctc tggattccca ccgatgtttt cactcatgga caactatatg ttgctctatc      6720
     aagagttcgt accaaagaag gtcttattgt aaaatccagt tctaatattg tcaccaatat      6780
     cgtttttaat gaagttcttt gaataaagct tattattctt ctctgctatc tcgctagaca      6840
     actcagctct cttctgaggt ctcactcgac aactcatctc ttctctgcta tctcgctaga      6900
     caactcagct ctcttctgag gtctcactcg acaactcatc tcttctctgc tatctcgcta      6960
     gacaactcag ctctcttctg aggtctcgct cgacaactca tctcttctct gctatctcgc      7020
     tagacaactc agctctcttc tgaggtctcg ctcgacaact cagctcttct ctgctatctc      7080
     gctagacaac tcagctctct tctgaggtct cactcgacaa ctcatctctt ctctgctatc      7140
     tcgctagaca actcagctct cttctgaggt ctcgcccgac aactcatctc ttctctgcta      7200
     tctcgctaga caactcagct ctcttctgag gtctcgctcg acaactcatc tcttctctgc      7260
     tatctcgcta gacaactcag ctctcttctg aggtctcgct cgacaactca gctcttctct      7320
     gctatctcgc tagacaactc agctctcttc tgaggtctcg ctcgacaact catctcttct      7380
     ctgctatctc gctagacaac tcagctctct tctgaggtct cgctcgacaa ctcatctctt      7440
     ctctgctatc tcgctagaca actcagctct cttctgaggt ctcactcgac aactcatctc      7500
     ttctctgcta tctcgctaga caactcagct ctcttctgag gtctcgctcg acaactcatc      7560
     tcttctctgc tatctcgcta gacaactcag ctctcttctg aggtctcact cgacaactca      7620
     tctcttctct gctatctcgc tagacaactc agctcttttc tgctatctcg ctagacaact      7680
     cagctctctt ctgaggtctc actcgacaac tcatctcttc tctgctatct cgctagacaa      7740
     ctcagctctc ttctgaggtc tcgctcgaca actcatctct tctctgctat ctcgctagac      7800
     aactcagctc tcttctgagg tctcgctcga caactccagc cttctcactc gcccccatat      7860
     gtaggagtat ggggggaggg agtattatta taaccacaga aacacaacaa tgtgccacat      7920
     aagagacagg agatagtgct cgcactaccc ctgaatcacc aaccctctca gaagcacctc      7980
     tgctcttatc tgggtctcgc tagacatctc cagtagtttg accattctca gcaacacttt      8040
     tgctatttta gaattttttt gccctcgcgg ggatcgaacc aaaaggtccg cgcgccaatg      8100
     acgcgcgcgc taccagctgt gccatgctgg aagcgattga acttcgacca ataacaatat      8160
     acaacatttc tttatttgtc aaagtgaaat agttttgaac aaacactatt caaaaaagta      8220
     attttaaatt gaaattatat caaattcacg atttgttccc aaatatttaa aactgaaact      8280
     caataagaga agatctcata ttctcactga taatccgaaa catgacattt gtttcaatgc      8340
     tgttttcaac ctcaagttgt aaaattcaaa aaccaagctg aaaatatgtt ttaaaaatct      8400
     agaaactaca ataattttta tgtgaatttt tggaaaaatc tcaagccaga cggagcacgc      8460
     gccttggcgc gtgcgaacgg ctgg                                             8484
//
ID   NPAL5A_CE   repbase;    DNA;    CEL; 237 BP.
XX
AC   .
XX
DT   31-AUG-1999 (Rel. 4.07, Created)
DT   31-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   NPAL5A_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Interspersed Repeat; Nonautonomous; CELE32A; MITE;
KW   NPAL5A_CE; Non-autonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Belknap R.W.;
RT   "NPAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RA   Jurka J.;
RT   "NPAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [3]
RP   1-237
RA   V V., Jurka J.;
RT   "NPAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [3] (Consensus)
XX
CC   The final version of the consensus sequence [3] have been
CC   determined
CC   based on identification of 5 bp-long target-site duplications.
CC   NPAL5A_CE has perfect 9 bp-long terminal inverted repeats and it
CC   forms non-perfect palindrome.
XX
SQ   Sequence 237 BP; 72 A; 52 C; 53 G; 60 T; 0 other;
     cacggcccgg caagtggtac atccatgcaa atgcgctcta ctgataattt gagtgtagac        60
     caggtttggg cgcgtgataa cgaaaaaagc tttggtccaa aaaatttaga atttaatttc       120
     ggacattttt tatatgcatc acaaaaaaac tggaccaacc gtttttgaga tacacgcgcc       180
     caaacgtcca ggtatacggt agacaaattg cgtacaggta ccacttctcg ggccgtg          237
//
