CC ****************************************************************
CC                                                                *
CC   REPBASE UPDATE                                               *
CC   (C) 1997-2003  Genetic Information Research Institute        *
CC   All rights reserved                                          *
CC                                                                *
CC   Edited by Jerzy Jurka                                        *
CC                                                                *
CC   A REFERENCE COLLECTION                                       * 
CC   OF ABUNDANT HUMAN PSEUDOGENE SEQUENCES                       *
CC   RELEASE 1.1.4; MAY 2001                                      *
CC                                                                *
CC   This release was supported in part by U.S.                   *
CC   Department of Energy grant DE-FG0395ER62139                  *
CC   and by N.I.H. grant 1P41LM06252-01.                          *
CC                                                                *
CC ****************************************************************
XX
ID   5S        repbase; DNA; PRI; 120 BP.
CC   5S DNA
XX
AC   K02217;
XX
DT   27-JAN-1997 (Rel. 1.0, Created)
DT   27-JAN-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human 5S rRNA gene H4.
XX
KW   5S ribosomal RNA; ribosomal RNA; transcription factor;
KW   retroposition; pseudogenes.
XX
OS   Homo sapiens
CC   Human DNA, clone pH4-44.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-120
RC   [1]  (bases 1 to 176)
RA   Emerson B.M., Roeder R.G.;
RT   "DNA sequences and transcription factor interactions of active and
RT   inactive forms of mammalian 5 S RNA genes";
RL   J. Biol. Chem. 259 (12), 7926-7935 (1984)
RX   MEDLINE; 84239741.
XX
DR   GENBANK; K02217; 97.0.
CC   Positions      47     166  Accession No K02217        GenBank (rel. 97.0)
XX
SQ   Sequence 120 BP; 25 A; 31 C; 37 G; 27 T; 0 other;
     gtctactgcc ataccaccct gaacacgccc gatctcatct gatcttggaa gctaagcagg        60
     gtcaggcctg gttggtacct gatgggagag agcctgggaa caccgggttc tgtagggttg       120
//
ID   7SL       repbase; DNA; PRI; 377 BP.
CC   7SL DNA
XX
AC   X04249;
XX
DT   27-JAN-1997 (Rel. 1.0, Created)
DT   27-JAN-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human gene for small cytoplasmic 7SL RNA (7L30.1).
XX
KW   7SL RNA; signal recognition particle; small cytoplasmic RNA;
KW   repeat; pseudogene; retroposon.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-377
RC   [1]  (bases 1 to 377)
RA   Ullu E., Weiner A.M.;
RT   "Human genes and pseudogenes for the 7SL RNA component of signal
RT   recognition particle";
RL   EMBO J. 3 (13), 3303-3310 (1984)
RX   MEDLINE; 85126939.
XX
DR   GENBANK; X04249; 96.0.
CC   Positions       1     377  Accession No X04249        GenBank (rel. 96.0)
XX
SQ   Sequence 377 BP; 68 A; 116 C; 118 G; 75 T; 0 other;
     cgctccccaa tgacgtaact gccctgcagc ttctagtagc ttttcgcagc gtctccgacc        60
     gccgggcgcg gtggcgcgtg cctgtagtcc cagctactcg ggaggctgag gtgggaggat       120
     cgcttgagcc caggagttct gggctgtagt gcgctatgcc gatcgggtgt ccgcactaag       180
     ttcggcatca atatggtgac ctcccgggag cgggggacca ccaggttgcc taaggagggg       240
     tgaaccggcc caggtcggaa acggagcagg tcaaaactcc cgtgctgatc agtagtggga       300
     tcgcgcctgt gaatagccac tgcactccag cctgagcaac atagcgagac cccgtctctt       360
     ttgcccccct ccctact                                                      377
//
ID   E1        repbase; RNA; RNA; 208 BP.
CC   E1 uRNA
XX
AC   L07382;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Homo sapiens E1 small nucleolar RNA.
XX
KW   E1 small nucleolar RNA.
XX
OS   Homo sapiens
CC   Homo sapiens snRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-208
RC   [1]  (bases 1 to 208)
RA   Ruff E.A., Rimoldi O.J., Raghu B., Eliceiri G.L.;
RT   "Three new nucleolar small RNAs of unique nucleotide sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 90, 635-638 (1993)
RX   MEDLINE; 93133841.
XX
DR   GENBANK; L07382; 97.0.
CC   Positions       1     208  Accession No L07382        GenBank (rel. 97.0)
XX
SQ   Sequence 208 BP; 48 A; 62 C; 54 G; 44 T; 0 other;
     tccaacgtgg atacaccctg ggaggtcact ctccccgggc tctgtccaag tggcgtaggg        60
     gagcataggg ctctgcccca tgatgtacaa gtccctttcc acaacgttgg aaataaagct       120
     gggcctcgtg tctgcgcctg catattccta cagcttccca gagtcctgtc gacaattact       180
     ggggagacaa accatgcagg aaacagcc                                          208
//
ID   E2        repbase; RNA; RNA; 154 BP.
CC   E2 uRNA
XX
AC   L07383;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Homo sapiens E2 small nucleolar RNA.
XX
KW   E2 small nucleolar RNA.
XX
OS   Homo sapiens
CC   Homo sapiens snRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-154
RC   [1]  (bases 1 to 154)
RA   Ruff E.A., Rimoldi O.J., Raghu B., Eliceiri G.L.;
RT   "Three new nucleolar small RNAs of unique nucleotide sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 90, 635-638 (1993)
RX   MEDLINE; 93133841.
XX
DR   GENBANK; L07383; 97.0.
CC   Positions       1     154  Accession No L07383        GenBank (rel. 97.0)
XX
SQ   Sequence 154 BP; 38 A; 28 C; 45 G; 43 T; 0 other;
     tgtgcacatt gttagagctt ggagttgagg ctactgactg gccgatgaac tcgcaagtgt        60
     aggtagtgtg ctacatgagg ggcaagtttt cgctaacacc acaagggtct ctggcccaat       120
     gagtggagtt tgatagtaat tcttgctaca agta                                   154
//
ID   E3        repbase; DNA; PRI; 135 BP.
CC   E3 DNA
XX
AC   U12212;
XX
DT   27-JAN-1997 (Rel. 1.0, Created)
DT   27-JAN-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human small nucleolar RNA (E3-1) gene, complete sequence.
XX
KW   Small nucleolar RNA; retroposition; pseudogenes.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-135
RC   [1]  (bases 1 to 476)
RA   Selvamurugan N., Nag M.K., Eliceiri G.L.;
RT   "Intron-encoded small nucleolar RNAs: New RNA sequence variants and
RT   genomic loci";
RL   Biochem. Biophys. Acta 1260, 230-234 (1995)
XX
RN   [2]
RP   1-135
RC   [2]  (bases 1 to 476)
RA   Eliceiri G.L.;
RT   "Direct Submission";
RL   Submitted (12-JUL-1994) George L. Eliceiri, Department of
RL   Pathology, St. Louis University School of Medicine, 1402 South
RL   Grand Blvd., St. Louis, MO 63104-1028, USA
XX
DR   GENBANK; U12212; 97.0.
CC   Positions     197     331  Accession No U12212        GenBank (rel. 97.0)
XX
SQ   Sequence 135 BP; 32 A; 27 C; 27 G; 49 T; 0 other;
     cacgcaggat tcagactaga atatagctgt taagtgctgt gttgtcattc tccctgctta        60
     aaataaagtt tttttcttaa ctatacctgt ctgctatctg ctgtagcagc cagggatgct       120
     tggtttcata catgt                                                        135
//
ID   HY1       repbase; DNA; PRI; 185 BP.
CC   HY1 DNA
XX
AC   V00584;
XX
DT   27-JAN-1997 (Rel. 1.0, Created)
DT   04-MAY-2001 (Rel. 1.1, Last updated, Version 2)
XX
DE   Human gene hY1 encoding a cytoplasmic Ro RNA.
XX
KW   Repeat; pseudogene; retroposon.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-185
RC   [1]  (bases 1 to 185)
RA   Wolin S.L., Steitz J.A.;
RT   "Genes for two small cytoplasmic Ro RNAs are adjacent and appear to
RT   be single-copy in the human genome";
RL   Cell 32 (3), 735-744 (1983)
RX   MEDLINE; 83155650.
XX
DR   GENBANK; V00584; 96.0.
CC   Positions       1     185  Accession No V00584        GenBank (rel. 96.0)
XX
SQ   Sequence 185 BP; 39 A; 46 C; 37 G; 63 T; 0 other;
     gggggcttta aatagttcaa acagtaggag gacttattgg ctggtccgaa ggtagtgagt        60
     tatctcaatt gattgttcac agtcagttac agatcgaact ccttgttcta ctctttcccc       120
     ccttctcact actgcacttg actagtcttt tacgagagtt tccactctcc tggcatccct       180
     cgttt                                                                   185
//
ID   L28       repbase; RNA; PRI; 485 BP.
CC   L28 mRNA
XX
AC   U14969;
XX
DT   27-JAN-1997 (Rel. 1.0, Created)
DT   27-JAN-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human ribosomal protein L28 mRNA, complete cds.
XX
KW   L28 mRNNA; repeat; pseudogene; retroposon.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-485
RC   [1]  (bases 1 to 485)
RA   Frigerio J.M., Dagorn J.C., Iovanna J.L.;
RT   "Cloning, sequencing and expression of the L5, L21, L27a, L28, S5,
RT   S9, S10 and S29 human ribosomal protein mRNAs";
RL   Biochim. Biophys. Acta 1262 (1), 64-68 (1995)
RX   MEDLINE; 95290496.
XX
RN   [2]
RP   1-485
RC   [2]  (bases 1 to 485)
RA   Iovanna J.L.;
RT   "Direct Submission";
RL   Submitted (21-SEP-1994) Juan L. Iovanna, Inserm U315, 46, Bd de la
RL   Gaye, Marseille 13009, France
XX
DR   GENBANK; U14969; 96.0.
CC   Positions       1     485  Accession No U14969        GenBank (rel. 96.0)
XX
SQ   Sequence 485 BP; 117 A; 158 C; 135 G; 75 T; 0 other;
     gtcgccgctg cggagggagc cgccgccatg tctgcgcatc tgcaatggat ggtcgtgcgg        60
     aactgctcca gtttcctgat caagaggaat aagcagacct acagcactga gcccaataac       120
     ttgaaggccc gcaattcctt ccgctacaac ggactgattc accgcaagac tgtgggcgtg       180
     gagccggcag ccgacggcaa aggtgtcgtg gtggtcatta agcggagatc cggccagcgg       240
     aagcctgcca cctcctatgt gcggaccacc atcaacaaga atgctcgcgc cacgctcagc       300
     agcatcagac acatgatccg caagaacaag taccgccccg acctgcgcat ggcagccatc       360
     cgcagggcca gcgccatcct gcgcacgcag aagcctgtga tggtgaagag gaagcggacc       420
     cgccccacca agagctcctg agccccctgc ccccagagca ataaagtcag ctggctttct       480
     caaaa                                                                   485
//
ID   RRNA45    repbase; RNA; RNA; 83 BP.
CC   RRNA45 rRNA
XX
AC   K01106;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human 4.5S (C8) RNA.
XX
KW   4.5S ribosomal RNA.
XX
OS   Homo sapiens
CC   Human (HeLa cell) RNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-83
RC   [1]  (bases 1 to 83)
RA   Kato N., Hoshimo H.-O., Harada F.;
RT   "Nucleotide sequence of 4.5S RNA (C8 or hY5) from HeLa cells";
RL   Biochem. Biophys. Res. Commun. 108, 363-370 (1982)
RX   MEDLINE; 83074666.
XX
DR   GENBANK; K01106; 97.0.
CC   Positions       1      83  Accession No K01106        GenBank (rel. 97.0)
XX
SQ   Sequence 83 BP; 14 A; 18 C; 20 G; 31 T; 0 other;
     agttggtccg agtgttgtgg gttattgtta agttgattta acattgtctc cccccacaac        60
     cgcgcttgac tagcttgctg ttt                                                83
//
ID   TRNA_ALA  repbase; RNA; RNA; 76 BP.
CC   TRNA_ALA tRNA
XX
AC   M17880;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human Ala-tRNA.
XX
KW   Transfer RNA-Ala.
XX
OS   Homo sapiens
CC   Human transfer RNA from HeLa cells.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-76
RC   [1]  (bases 1 to 76)
RA   Bunn C.C., Mathews M.B.;
RT   "Two human Ala-tRNA families are recognized by autoantibodies in
RT   polymyositis sera";
RL   Mol. Biol. Med. 4, 21-36 (1987)
RX   MEDLINE; 87286350.
XX
DR   GENBANK; M17880; 97.0.
CC   Positions       1      76  Accession No M17880        GenBank (rel. 97.0)
XX
SQ   Sequence 76 BP; 16 A; 19 C; 24 G; 17 T; 0 other;
     ggggaattag ctcaaatggt agagcgctcg ctttgcttgc gagaggtagc gggatcgatg        60
     cccgcattct ccacca                                                        76
//
ID   TRNA_ASN  repbase; RNA; RNA; 77 BP.
CC   TRNA_ASN tRNA
XX
AC   K00167;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human Asn-tRNA.
XX
KW   Transfer RNA; transfer RNA-Asn.
XX
OS   Homo sapiens
CC   Human liver and placenta tRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-77
RC   [1]  (bases 1 to 77)
RA   Chen E.Y., Roe B.A.;
RT   "Structural comparison of human, bovine, rat, and Walker 256
RT   carcinosarcoma asparaginyl-tRNA";
RL   Biochim. Biophys. Acta 610 (2), 272-284 (1980)
RX   MEDLINE; 81160724.
XX
DR   GENBANK; K00167; 97.0.
CC   Positions       1      77  Accession No K00167        GenBank (rel. 97.0)
XX
SQ   Sequence 77 BP; 13 A; 21 C; 26 G; 16 T; 1 other;
     gtctctgtgg cgcaatcggt tagcgcgttc ggctgttaac cgaaaggttg gtggntcgag        60
     cccacccagg gacgcca                                                       77
//
ID   TRNA_GLU  repbase; RNA; RNA; 75 BP.
CC   TRNA_GLU tRNA
XX
AC   M31637;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human Glu-tRNA.
XX
KW   Transfer RNA-Glu.
XX
OS   Homo sapiens
CC   Human tRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-75
RC   [1]  (bases 1 to 75)
RA   Smardo F.L. Jr., Calvet J.P.;
RT   "Human glutamate tRNA forms stable hybrids in vitro with 28S
RT   ribosomal RNA";
RL   Nucleic Acids Res. 15 (2), 661-681 (1987)
RX   MEDLINE; 87146384.
XX
DR   GENBANK; M31637; 97.0.
CC   Positions       1      75  Accession No M31637        GenBank (rel. 97.0)
XX
SQ   Sequence 75 BP; 9 A; 24 C; 25 G; 16 T; 1 other;
     tccctggtgg tctagtggdt aggattcggc gctctcaccg ccgcggcccg ggttcgattc        60
     ccggtcaggg aacca                                                         75
//
ID   TRNA_GLY  repbase; RNA; RNA; 74 BP.
CC   TRNA_GLY tRNA
XX
AC   K00208;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human Gly-tRNA-GCC.
XX
KW   Transfer RNA; transfer RNA-Gly.
XX
OS   Homo sapiens
CC   Homo sapiens placenta tRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-74
RC   [1]  (bases 1 to 74)
RA   Gupta R.C., Roe B.A., Randerath K.;
RT   "The nucleotide sequence of human tRNAGly (anticodon GCC)";
RL   Nucleic Acids Res. 7 (4), 959-970 (1979)
RX   MEDLINE; 80056031.
XX
DR   GENBANK; K00208; 97.0.
CC   Positions       1      74  Accession No K00208        GenBank (rel. 97.0)
XX
SQ   Sequence 74 BP; 12 A; 22 C; 24 G; 16 T; 0 other;
     gcattggtgg ttcagtggta gaattctcgc ctgccacgcg ggaggcccgg gttcgattcc        60
     cggccaatgc acca                                                          74
//
ID   TRNA_VAL  repbase; RNA; RNA; 76 BP.
CC   TRNA_VAL tRNA
XX
AC   K00254;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human Val-tRNA-1b.
XX
KW   Transfer RNA; transfer RNA-Val.
XX
OS   Homo sapiens
CC   Human placenta tRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-76
RC   [1]  (bases 1 to 76)
RA   Chen E.Y., Roe B.A.;
RT   "Sequence studies on human placenta Val-tRNA: Comparison with the
RT   mouse myeloma Val-tRNA";
RL   Biochem. Biophys. Res. Commun. 78, 631-640 (1977)
RX   MEDLINE; 78019905.
XX
DR   GENBANK; K00254; 97.0.
CC   Positions       1      76  Accession No K00254        GenBank (rel. 97.0)
XX
SQ   Sequence 76 BP; 17 A; 22 C; 21 G; 16 T; 0 other;
     gtttccgtag tgtagtggtt atcacgttcg cctcacacgc gaaaggtccc cggttcgaaa        60
     ccgggcggaa acacca                                                        76
//
ID   U1        repbase; DNA; PRI; 806 BP.
CC   U1 DNA
XX
AC   J00318;
XX
DT   27-JAN-1997 (Rel. 1.0, Created)
DT   27-JAN-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human U1 small nuclear RNA (snRNA) gene HU1-1.
XX
KW   U1 small nuclear RNA; retroposition; pseudogenes.
XX
OS   Homo sapiens
CC   Human (HeLa S-3 cell [1]) DNA; clones HSD2 [1], pHU1-1 [2], [3].
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-806
RC   [1]  (bases 433 to 596)
RA   Manser T., Gesteland R.F.;
RT   "Characterization of small nuclear RNA U1 gene candidates and
RT   pseudogenes from the human genome";
RL   J. Mol. Appl. Genet. 1 (2), 117-125 (1981)
RX   MEDLINE; 82267649.
XX
RN   [2]
RP   1-806
RC   [2]  (bases 41 to 631)
RA   Murphy J.T., Burgess R.R., Dahlberg J.E., Lund E.;
RT   "Transcription of a gene for human U1 small nuclear RNA";
RL   Cell 29 (1), 265-274 (1982)
RX   MEDLINE; 82259373.
XX
RN   [3]
RP   1-806
RC   [3]  (bases 1 to 806)
RA   Lund E., Dahlberg J.E.;
RT   "True genes for human U1 small nuclear RNA. Copy number,
RT   polymorphism, and methylation";
RL   J. Biol. Chem. 259 (3), 2013-2021 (1984)
RX   MEDLINE; 84111685.
XX
DR   GENBANK; J00318; 97.0.
CC   Positions       1     806  Accession No J00318        GenBank (rel. 97.0)
XX
SQ   Sequence 806 BP; 179 A; 182 C; 261 G; 184 T; 0 other;
     gctccatctg gccaccgaaa ggttgctcct taacacaggc taaggaccag cttctttggg        60
     agagaacaga cgcaggggcg ggagggaaaa agggagaggc agacgtcact tccccttggc       120
     ggctctggca gcagattggt cggttgagtg gcagaaaggc agacggggac tgggcaaggc       180
     actgtcggtg acatcacgga cagggcgact tctatgtaga tgaggcagcg cagaggctgc       240
     tgcttcgcca cttgctgctt caccacgaag gagttcccgt gccctgggag cgggttcagg       300
     accgctgatc ggaagtgaga atcccagctg tgtgtcaggg ctggaaaggg ctcgggagtg       360
     cgcggggcaa gtgaccgtgt gtgtaaagag tgaggcgtat gaggctgtgt cggggcagag       420
     gcccaagatc tcatacttac ctggcagggg agataccatg atcacgaagg tggttttccc       480
     agggcgaggc ttatccattg cactccggat gtgctgaccc ctgcgatttc cccaaatgtg       540
     ggaaactcga ctgcataatt tgtggtagtg ggggactgcg ttcgcgcttt cccctgactt       600
     tctggagttt caaaagtaga ctgtacgcta agggtcatat ctttttttgt tttggtttgt       660
     gtcttggttg gcgtcttaaa tgttaatcct acagtggagg gctgcggaat aggaagtaac       720
     atgtcgcctg cacgccatag gagaaaaagc gagcatcagc cgtatcggct ttgtaacaca       780
     aattagctat cgtgaagtcc gctcag                                            806
//
ID   U2        repbase; DNA; PRI; 896 BP.
CC   U2 DNA
XX
AC   K03023;
XX
DT   27-JAN-1997 (Rel. 1.0, Created)
DT   27-JAN-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human small nuclear RNA U2 gene.
XX
KW   Small nuclear RNA; retroposition; pseudogenes.
XX
OS   Homo sapiens
CC   Human DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-896
RC   [1]  (bases 1 to 896)
RA   Ares M.Jr., Mangin M., Weiner A.M.;
RT   "Orientation-dependent transcriptional activator upstream of a human
RT   U2 snRNA gene";
RL   Mol. Cell. Biol. 5, 1560-1570 (1985)
RX   MEDLINE; 85267672.
XX
DR   GENBANK; K03023; 97.0.
CC   Positions       1     896  Accession No K03023        GenBank (rel. 97.0)
XX
SQ   Sequence 896 BP; 178 A; 259 C; 282 G; 177 T; 0 other;
     ccttcggctt ccctgactgg gcatgggccc tcgtcccctc gtcccctcgg gtacggggcc        60
     ggtctccccg cccgcggcgc aaagtaaagg cccagcgcag ccccctcctg ccctgggccc       120
     tcgtctttgt ccaggaaaac gtggaccgct ctccgccgac agcctcttcc acagacccct       180
     gtcgccttcc cccccggtct cttccggttc tgtcttttcg ctgggctcga tacgaacaag       240
     gaagtggccc ccagcggagc ccggttcccc aggcagaggc ggccccgggg gcggagtcaa       300
     cggcggaggc cacgccctct gtgaaagggc ggggcatgca aattcgaaat gaaagcccgg       360
     gaacgccgga agaagcacgg gtgtaagatt tcccttttca aaggcggaga ataagaaatc       420
     agcccgagag tgtaagggcg tcaatagcgc tgtggacgag acagagggaa tggggcaagg       480
     agcgacgctg gggctctcac cgcgacttga atgtggatga gagtgggacg gtgacggcgg       540
     gcgcgaaggc gagcgcatcg cttctcggcc ttttggctaa gatcaagtgt agtatctgtt       600
     cttatcagtt taatatctga tacgtcctct atccgaggac aatatattaa atggattttt       660
     ggagcaggga gatggaatag gagcttgctc cgtccactcc acgcatcgac ctggtattgc       720
     agtacctcca ggaacggtgc accccctccg gggatacaac gtgtttccta aaagtagagg       780
     gaggtgagag acggtagcac ctgcggggcg gcttgcacgc cgagtgcctg tgacgcgccg       840
     gcttgactta actgcttccc tgaagtaccg tgaggttcct gatgtgcggg cggtag           896
//
ID   U3        repbase; RNA; RNA; 73 BP.
CC   U3 uRNA
XX
AC   K00777;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human U3 small nuclear RNA, 5' end.
XX
KW   U3 small nuclear RNA; small nuclear RNA.
XX
OS   Homo sapiens
CC   Human HeLa cell, cDNA to uRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-73
RC   [1]  (bases 1 to 73)
RA   Bernstein L.B., Mount S.M., Weiner A.M.;
RT   "Pseudogenes for human small nuclear RNA U3 appear to arise by
RT   integration of self-primed reverse transcripts of the RNA into new
RT   chromosomal sites";
RL   Cell 32, 461-472 (1983)
RX   MEDLINE; 83129437.
XX
DR   GENBANK; K00777; 97.0.
CC   Positions       1      73  Accession No K00777        GenBank (rel. 97.0)
XX
SQ   Sequence 73 BP; 20 A; 14 C; 15 G; 24 T; 0 other;
     agactatact ttcagggatc atttctatag ttcgttacta gagaagtttc tctgactgtg        60
     tagagcaccc gaa                                                           73
//
ID   U4B       repbase; RNA; RNA; 145 BP.
CC   U4B uRNA
XX
AC   K00472;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human U4b small nuclear RNA (snRNA).
XX
KW   U4 small nuclear RNA; nuclear RNA; small nuclear RNA.
XX
OS   Homo sapiens
CC   Human HeLa cell snRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-145
RC   [1]  (bases 1 to 145)
RA   Krol A., Branlant C., Lazar E., Gallinaro H., Jacob M.;
RT   "Primary and secondary structures of chicken, rat and man nuclear U4
RT   RNAs. Homologies with U1 and U5 RNAs";
RL   Nucleic Acids Res. 9, 2699-2716 (1981)
RX   MEDLINE; 82014865.
XX
DR   GENBANK; K00472; 97.0.
CC   Positions       1     145  Accession No K00472        GenBank (rel. 97.0)
XX
SQ   Sequence 145 BP; 35 A; 33 C; 35 G; 41 T; 1 other;
     nagctttgcg cagtggcagt atcgtagcca atgaggttta tccgaggcgc gattattgct        60
     aattgaaaac ttttcccaat accccgccgt gacgacttgc aatatagtcg gcattggcaa       120
     tttttgacag tctctacgga gactg                                             145
//
ID   U5B1      repbase; RNA; RNA; 116 BP.
CC   U5B1 uRNA
XX
AC   K03167;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human U5 B1 small nuclear RNA, from Hela cells, complete.
XX
KW   Small nuclear RNA.
XX
OS   Homo sapiens
CC   Human Hela cell uRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-116
RC   [1]  (bases 1 to 116)
RA   Branlant C., Krol A., Lazar E., Haendler B., Jacob M.,
RA   Galego-Dias L., Pousada C.;
RT   "High evolutionary conservation of the secondary structure and of
RT   certain nucleotide sequences of U5 RNA";
RL   Nucleic Acids Res. 11, 8359-8367 (1983)
RX   MEDLINE; 84169483.
XX
DR   GENBANK; K03167; 97.0.
CC   Positions       1     116  Accession No K03167        GenBank (rel. 97.0)
XX
SQ   Sequence 116 BP; 29 A; 28 C; 20 G; 39 T; 0 other;
     atactctggt ttctcttcag atcgcataaa tctttcgcct tttactaaag atttccgtgg        60
     agaggaacaa ctctgagtct taacccaatt ttttgagcct tgctccgaca aggcta           116
//
ID   U6        repbase; RNA; PRI; 107 BP.
CC   U6 RNA
XX
AC   X59362;
XX
DT   25-APR-1997 (Rel. 1.0, Created)
DT   25-APR-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   H.sapiens U6 snRNA.
XX
KW   small nuclear RNA; U6.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-107
RC   [1]  (bases 1 to 107)
RA   Hausner T.P., Giglio L.M., Weiner A.M.;
RT   "Evidence for base-pairing between mammalian U2 and U6 small nuclear
RT   ribonucleoprotein particles";
RL   Genes Dev. 4 (12A), 2146-2156 (1990)
RX   MEDLINE; 91099663.
XX
DR   GENBANK; X59362; 105.0.
CC   Positions       1     107  Accession No X59362       GenBank (rel. 105.0)
XX
SQ   Sequence 107 BP; 32 A; 24 C; 25 G; 26 T; 0 other;
     gtgctcgctt cggcagcaca tatactaaaa ttggaacgat acagagaaga ttagcatggc        60
     ccctgcgcaa ggatgacacg caaattcgtg aagcgttcca tattttt                     107
//
ID   UHG       repbase; RNA; PRI; 1357 BP.
CC   UHG RNA
XX
AC   L36587;
XX
DT   27-JAN-1997 (Rel. 1.0, Created)
DT   27-JAN-1997 (Rel. 1.0, Last updated, Version 1)
XX
DE   Homo sapiens spliced UHG RNA.
XX
KW   Small nucleolar RNA; repeat; pseudogene; retroposon.
XX
OS   Homo sapiens
CC   Homo sapiens placenta cDNA to other RNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1357
RC   [1]  (bases 1 to 1357)
RA   Tycowski K.T., Shu M.D., Steitz J.A.;
RT   "Requirement for intron-encoded U22 small nucleolar RNA in 18S
RT   ribosomal RNA maturation";
RL   Science 266 (5190), 1558-1561 (1994)
RX   MEDLINE; 95076276.
XX
CC   Contains Alu at positions 897-1021.
XX
DR   GENBANK; L36587; 96.0.
CC   Positions       1    1357  Accession No L36587        GenBank (rel. 96.0)
XX
SQ   Sequence 1357 BP; 338 A; 302 C; 317 G; 400 T; 0 other;
     gactggcgga taaggtcttg tgcgtggcct cgaggcttaa aagtagcagt ggggctttgt        60
     gaaggacaaa atggcgatgg cgggccgtgt aggtccccct tcctatgatg aggacctttt       120
     cacagacctg tactgagctc cgtgaggata agtaactctg aggagatggg ccctgcaagc       180
     ctccttctta gccgtctgtt cagaaaatag cgttttcgaa atgccctgag ttgacctaat       240
     gtcttattgg gctcctgtct gcaggattta cgcgcacgtt ggaaccgaag agagctctgt       300
     tgttgcaatg ttcagcccac aagagcttac tggtgaagga atgggacaag acccatcttt       360
     atgcaaagcc agcgttacag taatgttcca gcatctcata atctatcctg gggaattcag       420
     ctgcctccca gggtgaatac aggtattcct gatgacagtc tgcctctatc ttacagagca       480
     gcttgttgct atataccatt gaaaagcctt cagagctgag aggtactact aaccaataac       540
     ctgcttggct caaagggcca gcaccttctc tctaaagccc aagaggagtt tgaggaaaac       600
     taggtgtctg tgttcactcc aggctgaagt tacaggtctg agcaaataag gtgtataaaa       660
     aatggaatct gtcttggagg acatcagaag gtgaattttc caagttcttg gacaacctag       720
     ctgttgaaaa gctttctggg tttggggggt atttcagatg taccttaaag tgttagcaga       780
     cacagattaa gacactggga gccaatgaaa cagcagttga gggtttgctg tgtatcacat       840
     ttctgtattt tatcaccccc ttcctgcaac attatttatc tggaatctac ctgccctttt       900
     gttttttaga tacaagggct tggttttgtt acccaggctg gtttcaaggc catagcttta       960
     agagatcctc tcaccacaga tttccaaagt gctgggattg caggtgtgat tcatggcacc      1020
     cagactttgc tgcctttctt acatgatcca ggcccagaac ccaaactcag gcactgtata      1080
     gatgaccact ttcgtaaact actgacctag cttgttgcca attgttgatt gaacttccca      1140
     taactccact tcgtgtctgt tcctctgtat acagccacct tctgttcccg tcatgagcct      1200
     ttaggtctcc atttgcatat tgcaaatact atgttccatg taggtagctc attcagggcc      1260
     ttgctcttca cttcaaaaaa ggttcccttg aggactggct gtcaatttgt gttgctgtgt      1320
     tggttgttga tgaaaataat aaaatgattg attacat                               1357
//
ID   L7        repbase; RNA; PRI; 810 BP.
CC   L7 mRNA
XX
AC   L16558;
XX
DT   04-SEP-1998 (Rel. 1.0, Created)
DT   04-SEP-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human ribosomal protein L7 (RPL7) mRNA, complete cds.
XX
KW   ribosomal protein L7; HUMRPL7Y; L7.
XX
OS   Homo sapiens
CC   Homo sapiens cDNA to mRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-810
RC   [1]  (bases 1 to 810)
RA   Seshadri T., Uzman J.A., Oshima J., Campisi J.;
RT   "Identification of a transcript that is down-regulated in senescent
RT   human fibroblasts: Cloning, sequence analysis and regulation of the
RT   human L7 ribosomal protein gene";
RL   J. Biol. Chem. 268, 18474-18480 (1993)
RX   MEDLINE; 93366745.
XX
DR   GENBANK; L16558; 107.0.
CC   Positions       1     810  Accession No L16558       GenBank (rel. 107.0)
XX
SQ   Sequence 810 BP; 267 A; 146 C; 199 G; 198 T; 0 other;
     atggagggtg tagaagagaa gaagaaggag gttcctgctg tgccagaaac ccttaagaaa        60
     aagcgaagga atttcgcaga gctgaagatc aagcgcctga gaaagaagtt tgcccaaaag       120
     atgcttcgaa aggcaaggag gaagcttatc tatgaaaaag caaagcacta tcacaaggaa       180
     tataggcaga tgtacagaac tgaaattcga atggcgagga tggcaagaaa agctggcaac       240
     ttctatgtac ctgcagaacc caaattggcg tttgtcatca gaatcagagg tatcaatgga       300
     gtgagcccaa aggttcgaaa ggtgttgcag cttcttcgcc ttcgtcaaat cttcaatgga       360
     acctttgtga agctcaacaa ggcttcgatt aacatgctga ggattgtaga gccatatatt       420
     gcatgggggt accccaatct gaagtcagta aatgaactaa tctacaagcg tggttatggc       480
     aaaatcaata agaagcgaat tgctttgaca gataactctt tgattgctcg atctcttggt       540
     aaatacggca tcatctgcat ggaggatttg attcatgaga tctatactgt tggaaaacgc       600
     ttcaaagagg caaataactt cctgtggccc ttcaaattgt cttctccacg aggtggaatg       660
     aagaaaaaga ccacccattt tgtagaaggt ggagatgctg gcaacaggga ggaccagatc       720
     aacaggctta ttagaagaat gaactaaggt gtctaccatg attatttttc taagctggtt       780
     ggttaataaa cagtacctgc tctcaaattg                                        810
//
ID   XBR       repbase; DNA; PRI; 303 BP.
CC   XBR DNA
XX
AC   M16110;
XX
DT   10-OCT-1998 (Rel. 1.0, Created)
DT   10-OCT-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Xba repetitive element copy A, from human alpha-fetoprotein gene.
XX
KW   Repetitive sequence.
XX
OS   Homo Sapiens
CC   Human DNA, library of T.Maniatis, clones lambda-HAFP[26,33].
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-303
RC   [1]  (bases 1 TO 22166)
RA   Gibbs P.E., Zielinski R., Boyd C., Dugaiczyk A.;
RT   "Structure, polymorphism and novel repeated DNA elements revealed
RT   by a complete sequence of the human a-fetoprotein gene";
RL   Biochemistry 26, 1332-1343 (1987)
XX
CC   Not confirmed as repeat.
XX
DR   GENBANK; M16110; 78.0.
CC   Positions   11548   11850  Accession No M16110        GenBank (rel. 78.0)
XX
SQ   Sequence 303 BP; 102 A; 45 C; 47 G; 109 T; 0 other;
     aattgatagg tcacgttctc actctatttg cctttaaggg aagaaagcaa tcaagttaat        60
     atgttttcct tcattgtata gtatgtaact acggacacta ttagaggagg gatttgtgta       120
     gcacttagga cattatactt gataatttcc aagggtcttt ctagatttaa aagtctgatt       180
     ctaacgtagt aataaaaata aaggcccaat tttctcttta atattgcctg aagatattac       240
     tctattattg cattaaaatt aaacattcac acattgtttg cactgctaaa taaaattatg       300
     taa                                                                     303
//
ID   XTR       repbase; DNA; PRI; 101 BP.
CC   XTR DNA
XX
AC   M16110;
XX
DT   10-OCT-1998 (Rel. 1.0, Created)
DT   10-OCT-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Repetitive element X-2 from human alpha-fetoprotein gene.
XX
KW   Repetitive sequence.
XX
OS   Homo Sapiens
CC   Human DNA, library of T.Maniatis, clones lambda-HAFP[26,33].
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-101
RC   [1]  (bases 1 To 22166)
RA   Gibbs P.E., Zielinski R., Boyd C., Dugaiczyk A.;
RT   "Structure, polymorphism and novel repeated DNA elements revealed
RT   by a complete sequence of the human a-fetoprotein gene";
RL   Biochemistry 26, 1332-1343 (1987)
XX
CC   Not confirmed as repeat.
XX
DR   GENBANK; M16110; 78.0.
CC   Positions     564     664  Accession No M16110        GenBank (rel. 78.0)
XX
SQ   Sequence 101 BP; 36 A; 8 C; 18 G; 39 T; 0 other;
     ttaatttgag agaaattaat tattctgcaa cttagggaca agtcatgtct ttgaatattc        60
     tgtagtttga ggagaatatt tgttatattt gcaaaataaa a                           101
//
ID   7SK       repbase; DNA; PRI; 193 BP.
CC   7SK DNA
XX
AC   M14397;
XX
DT   10-OCT-1998 (Rel. 1.0, Created)
DT   10-OCT-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human family A3 repeated element DNA; 7SK RNA pseudogene.
XX
KW   7SK, Pseudogene.
XX
OS   Homo sapiens
CC   Human fetal liver DNA.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-193
RC   [1]  (bases 1 to 513)
RA   Humphries P., Maccabe A.P., Spencer R.A., Humphries M.M., Pearson C.;
RT   "Structural and transcriptional properties associated with a member of
RT   a new family of conserved short dispersed repeated elements in
RT   human DNA";
RL   Gene 39, 255-261 (1985)
XX
DR   GENBANK; M14397; 78.0.
CC   Positions     189     381  Accession No M14397        GenBank (rel. 78.0)
XX
SQ   Sequence 193 BP; 34 A; 59 C; 51 G; 49 T; 0 other;
     gatgtgaggg caatctggct gcgacatctg tccccactga ttaccagggt tgattcggct        60
     gatctggctg gctaggcggg tctcctcttc ctccctcagc cctccatgtg tgtacctcct       120
     gaagcggact ggtcttcagt caagggtaga cgagtagctg tgctcccctg ctagaacctc       180
     caaacaagct ctc                                                          193
//
ID   L32       repbase; DNA; ROD; 408 BP.
CC   L32 DNA
XX
AC   K02061;
XX
DT   10-OCT-1998 (Rel. 1.0, Created)
DT   10-OCT-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Mouse ribosomal protein pseudogene rpL32-4A coding for L32.
XX
KW   pseudogene; ribosomal protein; L32.
XX
OS   Mus musculus
CC   Mouse (BALB/c) sperm DNA, clone rpL32-4A.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae;
OC   Murinae; Mus.
XX
RN   [1]
RP   1-408
RC   [1]  (bases 1 to 706)
RA   Dudov K.P., Perry R.P.;
RT   "The gene family encoding the mouse ribosomal protein L32 contains a
RT   uniquely expressed intron-containing gene and an unmutated
RT   processed gene";
RL   Cell 37, 457-468 (1984)
RX   MEDLINE; 84205680.
XX
DR   GENBANK; K02061; 105.0.
CC   Positions    113     520  Accession No K02061       GenBank (rel. 105.0)
XX
SQ   Sequence 408 BP; 128 A; 103 C; 107 G; 70 T; 0 other;
     atggctgccc tccggcctct ggtgaagccc aagatcgtca aaaagaggac caagaagttc        60
     atcaggcacc agtcagaccg atatgtgaaa attaagcgaa actggcggaa acccagaggc       120
     attgacaaca gggtgcggag aaggttcaag ggccagatcc tgatgcccaa catcggttat       180
     gggagcaaca agaaaaccaa gcacatgctg cccagcggct tccgcaagtt cctggtccac       240
     aatgtcaagg agctggaggt gctgctgatg tgcaacaaat cttactgtgc tgagattgct       300
     cacaatgtgt cctctaagaa ccgaaaagcc attgtagaaa gagcagcaca gctggccatc       360
     agagtcacca atcccaacgc caggctacgc agcgaagaaa atgaatag                    408
//
ID   L7A       repbase; RNA; PRI; 860 BP.
CC   L7A mRNA
XX
AC   M36072;
XX
DT   06-MAY-1998 (Rel. 1.0, Created)
DT   06-MAY-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Human ribosomal protein L7a (surf 3) large subunit mRNA.
XX
KW   ribosomal protein.
XX
OS   Homo sapiens
CC   Human fibroblast cell line GM2096(SV-9), cDNA to mRNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-860
RC   [1]  (bases 1 to 860)
RA   Ben-Ishai R., Scharf R., Sharon R., Kapten I.;
RT   "A human cellular sequence implicated in trk oncogene activation is
RT   DNA damage inducible";
RL   Proc. Natl. Acad. Sci. U.S.A. 87 (16), 6039-6043 (1990)
RX   MEDLINE; 90349550.
XX
DR   GENBANK; M36072; 109.0.
CC   Positions      32     891  Accession No M36072       GenBank (rel. 109.0)
XX
SQ   Sequence 860 BP; 250 A; 224 C; 235 G; 182 T; 0 other;
     atgccgaaag gaaagaaggc caagggaaag aaggtggctc cggccccagc tgtcgtgaag        60
     aagcaggagg ctaagaaagt ggtgaatccc ctgtttgaga aaaggcctaa gaattttggc       120
     attggacagg acatccagcc caaaagagac ctcacccgct ttgtgaaatg gccccgctat       180
     atcaggttgc agcggcagag agccatcctc tataagcggc tgaaagtgcc tcctgcgatt       240
     aaccagttca cccaggccct ggaccgccaa acagctactc agctgcttaa gctggcccac       300
     aagtacagac cagagacaaa gcaagagaag aagcagagac tgttggcccg ggccgagaag       360
     aaggctgctg gcaaagggga cgtcccaacg aagagaccac ctgtccttcg agcaggagtt       420
     aacaccgtca ccaccttggt ggagaacaag aaagctcagc tggtggtgat tgcacacgac       480
     gtggatccca tcgagctggt tgtcttcttg cctgccctgt gtcgtaaaat gggggtccct       540
     tactgcatta tcaagggaaa ggcaagactg ggacgtctag tccacaggaa gacctgcacc       600
     actgtcgcct tcacacaggt gaactcggaa gacaaaggcg ctttggctaa gctggtggaa       660
     gctatcagga ccaattacaa tgacagatac gatgagatcc gccgtcactg gggtggcaat       720
     gtcctgggtc ctaagtctgt ggctcgtatc gccaagctcg aaaaggcaaa ggctaaagaa       780
     cttgccacta aactgggtta aatgtacact gttgagtttt ctgtacataa aaataattga       840
     aataatacaa attttccttc                                                   860
//
ID   L23A      repbase; DNA; PSE; 471 BP.
CC   L23A DNA
XX
AC   AF001689;
XX
DT   13-JAN-2000 (Rel. 1.0, Created)
DT   13-JAN-2000 (Rel. 1.0, Last updated, Version 1)
XX
DE   Ribosomal protein L23A (protein coding region only).
XX
KW   L23A.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Mammalia;
OC   Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-471
RC   [1]  (bases 1 to 471)
RA   Fan W., Christensen M., Eichler E., Zhang X., Lennon G.;
RT   "Cloning, sequencing, gene organization, and localization of the
RT   human ribosomal protein RPL23A gene";
RL   Genomics 46 (2), 234-239 (1997)
RX   MEDLINE; 98086480.
XX
RN   [2]
RP   1-471
RC   [2]  (bases 1 to 471)
RA   Fan W.;
RT   "Direct Submission";
RL   Submitted (29-APR-1997) Human Genome Center, LLNL, 7000 East
RL   Avenue, Livermore, CA 94551, USA
XX
DR   GENBANK; AF001689; 114.0.
CC   Positions    695     719  Accession No AF001689      GenBank (rel. 114.0)
DR   GENBANK; AF001689; 114.0.
CC   Positions   1393    1576  Accession No AF001689      GenBank (rel. 114.0)
DR   GENBANK; AF001689; 114.0.
CC   Positions   2437    2613  Accession No AF001689      GenBank (rel. 114.0)
DR   GENBANK; AF001689; 114.0.
CC   Positions   3288    3357  Accession No AF001689      GenBank (rel. 114.0)
DR   GENBANK; AF001689; 114.0.
CC   Positions   3582    3596  Accession No AF001689      GenBank (rel. 114.0)
XX
SQ   Sequence 471 BP; 149 A; 116 C; 117 G; 89 T; 0 other;
     atggcgccga aagcgaagaa ggaagctcct gcccctccta aagctgaagc caaagcgaag        60
     gctttaaagg ccaagaaggc agtgttgaaa ggtgtccaca gccacaaaaa gaagaagatc       120
     cgcacgtcac ccaccttccg gcggccgaag acactgcgac tccggagaca gcccaaatat       180
     cctcggaaga gcgctcccag gagaaacaag cttgaccact atgctatcat caagtttccg       240
     ctgaccactg agtctgccat gaagaagata gaagacaaca acacacttgt gttcattgtg       300
     gatgttaaag ccaacaagca ccagattaaa caggctgtga agaagctgta tgacattgat       360
     gtggccaagg tcaacaccct gattcggcct gatggagaga agaaggcata tgttcgactg       420
     gctcctgatt acgatgcttt ggatgttgcc aacaaaattg ggatcatcta a                471
//
ID   L10       repbase; RNA; PSE; 769 BP.
CC   L10 mRNA
XX
AC   X87106;
XX
DT   07-FEB-2000 (Rel. 1.0, Created)
DT   07-FEB-2000 (Rel. 1.0, Last updated, Version 1)
XX
DE   R.norvegicus mRNA for ribosomal protein L10.
XX
KW   ribosomal protein L10.
XX
OS   Rattus norvegicus
CC   Norway rat.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
OC   Rodentia; Sciurognathi; Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-769
RC   [1]  (bases 1 to 769)
RA   Chan Y.L., Diaz J.J., Denoroy L., Madjar J.J., Wool I.G.;
RT   "The primary structure of rat ribosomal protein L10: relationship to
RT   a Jun-binding protein and to a putative Wilm's tumor suppressor";
RL   Biochem. Biophys. Res. Commun. 255, 952-956 (1996)
XX
RN   [2]
RP   1-769
RC   [2]  (bases 1 to 769)
RA   Chan Y.;
RT   "Direct Submission";
RL   Submitted (09-MAY-1995) Y. Chan, University of Chicago, 920 East
RL   58th Street, Chicago Illinois 60637, USA
XX
DR   GENBANK; X87106; 114.0.
CC   Positions      1     769  Accession No X87106        GenBank (rel. 114.0)
XX
SQ   Sequence 769 BP; 187 A; 188 C; 197 G; 197 T; 0 other;
     tcaggcctgg gagcgtctct tttcctctgg caccccatcg acgatcctag ttgtcatcat        60
     gggccgccgc cccgcccggt gttatcgcta ttgtaagaac aagccatacc caaagtctcg       120
     tttctgtcgt ggtgtccctg atgctaagat ccgcatcttt gacttgggac ggaagaaagc       180
     aaaagtggat gaatttccac tttgtggcca catggtgtca gatgaatatg aacaactctc       240
     ttctgaagct ctggaggctg ctcgtatttg tgccaacaaa tacatggtaa agagttgtgg       300
     caaggatggc tttcatatcc gggtgaggct ccaccctttc catgtcatcc gtatcaacaa       360
     gatgttgtcc tgtgctgggg ctgacaggct ccagacaggt atgcgtggtg cctttgggaa       420
     accccagggg acagtagcca gggttcacat tggccaagtc atcatgtcta tccgaaccaa       480
     gctgcagaat aaggaacatg tgattgaggc tctgcgcagg gccaagttca agttccctgg       540
     ccggcagaag atccacatct caaagaaatg gggttttacc aagttcaatg cagatgaatt       600
     tgaagacatg gttgctgaga agcggctcat tcctgatggc tgtggtgtca aatatatccc       660
     caatcgtggt cctcttgaca agtggagagc cctgcattcc tgaaggcttc cacagtgcgc       720
     tcctatgcgc tatcaaatga ggttcaataa taaagtctcg cgttcaaaa                   769
//
ID   CYCLO     repbase; DNA; PRI; 753 BP.
CC   CYCLO DNA
XX
AC   ;
XX
DT   18-SEP-2000 (Rel. 1.0, Created)
DT   18-SEP-2000 (Rel. 1.0, Last updated, Version 1)
XX
DE   Cyclophilin-related retropseudogene (a consensus).
XX
KW   CYCLO.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-753
RC   [1] (bases 1 to 753)
RA   Jurka J.
RT   ;
RL   Direct submission (September 2000)
XX
CC   Present in multiple copies of different age.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 753 BP; 189 A; 181 C; 181 G; 202 T; 0 other;
     gctttgcaga gccaccgccg ccgggagccc tgtactatca gccatggtca accccaccgt        60
     gttcttcgac attgccgtcg acggcgagcc cttgggccgc gtctccttcg agctgtttgc       120
     agacaagatt ccaaagacag cagaaaattt cgtgctctga gcactggaga gaaaggattt       180
     ggttataagg gttcctgctt tcacagaatt attccagggt ttatgtgtca gggtggtgac       240
     ttcacacgcc ataatggcac tggtggcaag tccatctacg gggagaaatt tgatgatgag       300
     aacttcatcc taaagcatac aggtcctggc atcttgtcca tggcaaatgc tggacccaac       360
     acaaatggtt cccagttttt catctgcact gccaagactg agtggttgga tggcaagcat       420
     gtggtctttg gcaaggtgaa agaaggcatg aatattgtgg aggccatgga gcgctttggg       480
     tccaggaatg gcaagaccag caagaagatc accattgctg actgtggaca actctaataa       540
     gtttgacttg tgttttatct taaccaccag accattcctt ctgtagctca ggagagcacc       600
     cctccacccc atttgctcgc agtatcctag aatctttgtg ctctcgctgc agttcccttt       660
     gggttccatg ttttccttgt tcccttccat gcctagctgg attgcagagt taagtttatg       720
     attatgaaat aaaaactaaa taacaacaaa aaa                                    753
//
ID   L31       repbase; DNA; PSEUD; 442 BP.
CC   L31 DNA
XX
AC   ;
XX
DT   20-OCT-2000 (Rel. 1.0, Created)
DT   20-OCT-2000 (Rel. 1.0, Last updated, Version 1)
XX
DE   A consensus sequence of mammalian ribosomal protein L31.
XX
KW   L31; retropseudogenes.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-442
RC   [1]
RA   Tanaka T., Kuwano Y., Kuzumaki T., Ishikawa K., Ogata K.;
RT   "Nucleotide sequence of cloned cDNA specific for rat ribosomal
RT   protein L31";
RL   Eur. J. Biochem. 162 (1), 45-48 (1987)
XX
RN   [2]
RP   1-442
RC   [2]
RA   Chester K.A., Robson L., Begent R.H., Talbot I.C., Pringle J.H.,
RA   Primrose L., Macpherson A.J., Boxer G., Southall P.,
RA   Malcolm A.D.;
RT   "Identification of a human ribosomal protein mRNA with increased
RT   expression in colorectal tumours";
RL   Biochim. Biophys. Acta 1009 (3), 297-300 (1989)
XX
RN   [3]
RP   1-442
RC   [3]
RA   Nobori T., Hexdall L.E., Carson D.A.;
RT   "cDNA sequence of human ribosomal protein L31";
RL   Nucleic Acids Res. 17 (17), 7105 (1989)
XX
RN   [4]
RP   1-442
RC   [4] (bases 1 to 442)
RA   Jurka J.
RT   ;
RL   Direct submission (October 2000)
XX
CC   [4] (Consensus)
XX
SQ   Sequence 442 BP; 142 A; 102 C; 103 G; 95 T; 0 other;
     ttcctttcca acttgggccc agcagaatgg ctcccgcaaa gaagggtggc gagaagaaaa        60
     agggccgttc tgccatcaac gaggtggtga cccgagaata caccatcaac attcacaagc       120
     gcatccatgg agtgggcttc aagaagcgtg cccctcgggc actcaaagag atccggaaat       180
     ttgccatgaa ggagatggga actccagatg tgcgcattga taccaggctc aacaaagctg       240
     tctgggccaa aggaataagg aatgtcccat accgtatccg tgtgcggttg tccagaaaac       300
     gtaatgagga tgaagattca ccaaataagc tctatacttt ggttacctat gtacctgtta       360
     ccactttcaa aaatctacag acagtcaatg tggatgagaa ctaaccgctg atcatcaaat       420
     acatcaaata aagttataaa at                                                442
//
ID   U13       repbase; RNA; PSE; 112 BP.
CC   U13 snRNA
XX
AC   ;
XX
DT   26-FEB-2001 (Rel. 1.1, Created)
DT   26-FEB-2001 (Rel. 1.1, Last updated, Version 1)
XX
DE   H.sapiens U13 snRNA pseudogene - a consensus.
XX
KW   class III pseudogenes; U13 snRNA pseudogenes; U13.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
OC   Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-112
RC   [1]
RA   Baserga S.J., Yang X.D., Steitz J.A.;
RT   "Three pseudogenes for human U13 snRNA belong to class III";
RL   Gene 107 (2), 347-348 (1991)
XX
CC   Present in a few hundred of copies. Consensus by J. Jurka.
XX
CC   [1] 
XX
SQ   Sequence 112 BP; 26 A; 24 C; 25 G; 34 T; 3 other;
     gatccttttg tagttcatra gcgtgatgat tgggtgttca tgtgcatgtg tgagatgtgc        60
     caccctcraa ccttgttacg acatcggcac attacccrtc tgacatgaaa aa               112
//
ID   L23       repbase; DNA; PSE; 1310 BP.
CC   L23 DNA
XX
AC   ;
XX
DT   17-APR-2001 (Rel. 1.1, Created)
DT   17-APR-2001 (Rel. 1.1, Last updated, Version 1)
XX
DE   Human ribosomal L23 protein-encoding sequence: a consensus.
XX
KW   L23.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Mammalia;
OC   Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1310
RC   [1] (bases 1 to 1310)
RA   Jurka J.;
RT   ".";
RL   Direct submission (April 2001)
XX
CC   Matches a number of diverse L23 retropseudogenes.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1310 BP; 346 A; 323 C; 383 G; 252 T; 6 other;
     gctctaccgg caggatttga tggcgtgatg tctcacagaa agttctccgc tcccagacat        60
     gggtccctcg gcttcctgcc tcggaagcgc agcagcaggc atcgtgggaa ggtgaagagc       120
     ttccctaagg atgacccgtc caagccggtc cacctcacag ccttcctggg atacaaggct       180
     ggcatgacyc acatcgtgcg ggaagtcgac aggccgggat ccaaggtgaa caagaaggag       240
     gtggtggagg ctgtgaccat tgtrgagacg ccacccatgg tggttgtggg cattgtgggc       300
     tacgtggaaa cccctcgagg cctccggacc ttcaagactg tctttgctga gcacatcagt       360
     gatgaatgca agaggcgttt ctataagaac tggcataaat ctaagaagaa ggcctttacc       420
     aagtactgca agaaatggca ggatgaggat ggcaagaagc agctggagaa ggacttcagc       480
     agcatgaaga agtactgcca agtcatccgc gtcattgccc acacccagat gcgcctgctt       540
     cctctgcgcc agaagaaggc ccacctgatg gagatccagg tgaacggagg cactgtggct       600
     gagaagctgg actgggcccg cgagaggctc gagcagcagg tacctgtgaa ccaagtgttt       660
     gggcaggatg agatgatcga cgtcatcggg gtgaccaagg gcaaaggcta caaaggggtc       720
     accagtcgtt ggcacaccaa gaagctgccc cgcaagaccc accraggcct gygcaaggtg       780
     gcctgtattg gggcatggca tcctgctcgt gtggscttct ctgtggcacg tgctgggcag       840
     aaaggctacc atcaccgcac tgagatcaac aagaagatct ataagattgg ccagggctac       900
     cttatcaagg acggcaagct gatcaagaac aatgcctcca ctgactatga cctgtctgac       960
     aagagcatca accctctggg tggctttgtc cactatggtg aagtgaccaa tgactttgtc      1020
     atgctgaaag gctgtgtggt gggaaccaag aagcgggtgc tcaccctccg caagtccttg      1080
     ctggtgcaga cgaagcggcg ggctctggag aagattgacc ttaagttcat tgacaccacc      1140
     tccaagtttg gccatggccg cttccagacc atggaggaga agaaagcatt catgggacca      1200
     ctcaagaaag accgaattgc aaaggaagaa ggagcttaat gccaggaaca gattttgcag      1260
     ctggtggggt ctcaataaaa gttattttcc actgaaaaaa aaaaanaaaa                 1310
//
ID   L37       repbase; DNA; PSE; 367 BP.
CC   L37 DNA
XX
AC   ;
XX
DT   17-APR-2001 (Rel. 1.1, Created)
DT   17-APR-2001 (Rel. 1.1, Last updated, Version 1)
XX
DE   DNA sequence of ribosomal protein L37 - a consensus.
XX
KW   HUMRPL37; HUMRPL37Z; S79979; L37.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
OC   Primates; Catarrhini; Hominidae; Homo.   
XX
RN   [1]
RP   1-367
RC   [1]
RA   Kato S.;
RT   "Cloning of human ribosomal protein L37 cDNA";
RL   Unpublished (1994)
RL   Submitted (02-NOV-1993) to the DDBJ/EMBL/GenBank databases
XX
RN   [2]
RP   1-367
RC   [2]
RA   Barnard G.F., Staniunas R.J., Puder M., Steele G.D. Jr.,
RA   Chen L.B.;
RT   "Human ribosomal protein L37 has motifs predicting serine/threonine
RT   phosphorylation and a zinc-finger domain";
RL   Biochim. Biophys. Acta 1218 (3), 425-428 (1994)
XX
RN   [3]
RP   1-367
RC   [3]
RA   Su S., Bird R.C.;
RT   "Cell cycle, differentiation and tissue-independent expression of
RT   ribosomal protein L37";
RL   Eur. J. Biochem. 232 (3), 789-797 (1995)
XX
RN   [4]
RP   1-367
RC   [4] (bases 1 to 367)
RA   Jurka J.;
RT   ".";
RL   Direct submission (April 2001)
XX
CC   based primarily on loci D23661, L11567, S79979 except of
CC   G(206) amd T(325) prevalent in retropseudogenes.
XX
CC   [4] (Consensus)
XX
SQ   Sequence 367 BP; 112 A; 85 C; 92 G; 78 T; 0 other;
     tttctggtct cggccgcaga agcgagatga cgaagggaac gtcatcgttt ggaaagcgtc        60
     gcaataagac gcacacgttg tgccgccgct gtggctctaa ggcctaccac cttcagaagt       120
     cgacctgtgg caaatgtggc taccctgcca agcgcaagag aaagtataac tggagtgcca       180
     aggctaaaag acgaaatacc accgggactg gtcgaatgag gcacctaaaa attgtatacc       240
     gcagattcag gcatggattc cgtgaaggaa caacacctaa acccaagagg gcagctgttg       300
     cagcatccag ttcatcttaa gaatttcaac gattagtcat gcaataaatg ttctggtttt       360
     aaaaaat                                                                 367
//
ID   Y4        repbase; DNA; PSE; 107 BP.
CC   Y4 DNA
XX
AC   ;
XX
DT   26-APR-2001 (Rel. 1.1, Created)
DT   26-APR-2001 (Rel. 1.1, Last updated, Version 1)
XX
DE   Human small cytoplasmic Y RNA (Y4) DNA sequence - a consensus.
XX
KW   Y4.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-107
RC   [1]
RA   O'Brien C.A., Harley J.B.;
RT   "Association of hY4 pseudogenes with Alu repeats and abundance 
RT   of hY RNA-like sequences in the human genome";
RL   Gene 116 (2), 285-289 (1992)
XX
RN   [2]
RP   1-107
RC   [2]
RA   Maraia R.J., Sasaki-Tozawa N., Driscoll C.T., Green E.D.,
RA   Darlington G.J.;
RT   "The human Y4 small cytoplasmic RNA gene is controlled by upstream
RT   elements and resides on chromosome 7 with all other hY scRNA genes";
RL   Nucleic Acids Res. 22 (15), 3045-3052 (1994)
XX
RN   [3]
RP   1-107
RC   [3] (bases 1 to 107)
RA   Jurka J.;
RT   ".";
RL   Direct submission (April 2001)
XX
CC   Present in over 100 copies in the genome.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 107 BP; 38 A; 19 C; 21 G; 29 T; 0 other;
     ggctggtccg atggtagtgg gttatcagaa cttattaaca ttagtgtcac taaagttggt        60
     atacaacccc ccactgctaa atttgactgg cttaaaaaaa aaaaaaa                     107
//
ID   HY3       repbase; DNA; PSE; 95 BP.
CC   HY3 DNA
XX
AC   ;
XX
DT   04-MAY-2001 (Rel. 1.1, Created)
DT   04-MAY-2001 (Rel. 1.1, Last updated, Version 1)
XX
DE   Ro(hY3) pseudogene - a consensus.
XX
KW   Ro, hY3; pseudogene; repetitive element.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Eutheria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-95
RC   [1]
RA   Wolin S.A., Steitz J.A.;
RT   "Genes for two small cytoplasmic Ro RNAs are adjacent and appear to
RT   be single-copy in the human genome";
RL   Cell 32(3), 735-744 (1983)
XX
RN   [2]
RP   1-95
RC   [2]
RA   Landsman D., McBride O.W., Soares N., Crippa M.P., Srikantha T.,
RA   Bustin M.;
RT   "Chromosomal protein HMG-14: Identification, characterization, and
RT   localization of a functional gene from the large human multigene
RT   family";
RL   J. Biol. Chem. 264, 3421-3427 (1988)
XX
RN   [3]
RP   1-95
RC   [3]
RA   Jurka J., Walichiewicz J., Milosavljevic A.;
RT   "Prototypic sequences for human repetitive DNA";
RL   J. Mol. Evol. 35, 286-291 (1992)
XX
RN   [4]
RP   1-95
RC   [4]
RA   Jurka J.
RT   ;
RL   Direct submission (1995)
XX
CC   [4] (Consensus)
XX
SQ   Sequence 95 BP; 32 A; 17 C; 24 G; 20 T; 2 other;
     ggctggttgg agtgcagcgn tgtttacaac taattgatca caaccagtta caaatttctt        60
     tgttccttct ccactcccgc tgcttcantt gacta                                   95
//
ID   HY1_SINE  repbase; DNA; HUM; 129 BP.
CC   HY1_SINE DNA
XX
AC   ;
XX
DT   04-MAY-2001 (Rel. 1.1, Created)
DT   04-MAY-2001 (Rel. 1.1, Last updated, Version 1)
XX
DE   SINE-like element derived from HY1 scRNA - a consensus.
XX
KW   Ro RNA; ribonucleoprotein; small cytoplasmic RNA; HY1_SINE.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Mammalia;
OC   Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-129
RC   [1]
RA   Wolin S.L., Steitz J.A.;
RT   "The Ro small cytoplasmic ribonucleoproteins: Identification of the
RT   antigenic protein and its binding site on the Ro RNAs";
RL   Proc. Natl. Acad. Sci. U.S.A. 81, 1996-2000 (1984)
XX
RN   [2]
RP   1-129
RC   [2] (bases 1 to 129)
RA   Jurka J.
RT   ;
RL   Direct submission (August 24, 2000)
XX
CC   There are two subfamilies in this sine-like family. One almost identical
CC   to HY1 RNA and the other one with slightly different consensus sequence
CC   included here. Similarity to consensus averages around 88%. Some copies
CC   are flanked by direct repeats similar to those in other retroposons.
CC   HY1_SINE is an example of a relatively recent birth of SINE elements
CC   in primates.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 129 BP; 37 A; 31 C; 20 G; 40 T; 1 other;
     ggaaaactcg gctggtctga aggtagtgag ttatctcaay tgattgttca cagtcagtta        60
     cagatcaaac tccttgttct actctttccc cccttctcac tactgcactt gactaatctt       120
     aaaaaaaaa                                                               129
//
ID   tRNA-His-CAY_ repbase;    DNA;    VRT; 75 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-His-CAY_.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-75
RA   Smit A.F.;
RT   "tRNA-His-CAY_ - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 75 BP; 15 A; 22 C; 21 G; 17 T; 0 other;
     gccatgatcg tatagtggtt agtactctgc gctgtggccg cagcaacctc ggttcgaatc        60
     cgagtcacgg cacca                                                         75
//
ID   tRNAGlnTTG_CB repbase;    DNA;    INV; 81 BP.
XX
AC   .
XX
DE   from Caenorhabditis briggsae.
XX
KW   tRNA; tRNAGlnTTG_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-81
RA   Smit A.F.;
RT   "tRNAGlnTTG_CB - from Caenorhabditis briggsae.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 81 BP; 16 A; 19 C; 21 G; 25 T; 0 other;
     ggttccatgg tgtagcggtt agcactcagg actttgaatc ctgcgacccg agttcaaatc        60
     tcggtggaac ctatcgtttt t                                                  81
//
ID   tRNA-Leu-TTA(m) repbase;    DNA;    VRT; 78 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Leu-TTA(m).
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-78
RA   Smit A.F.;
RT   "tRNA-Leu-TTA(m) - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   (mitochondrial).
XX
SQ   Sequence 78 BP; 26 A; 17 C; 13 G; 22 T; 0 other;
     gttaagatgg cagagcctgg taatcgcata aaacttaaaa ttttacagtc agaggttcaa        60
     ctcctcttct taacacca                                                      78
//
ID   SSU-rRNA_Hsa repbase;    DNA;    INV; 1869 BP.
XX
AC   .
XX
DE   from Metazoa.
XX
KW   rRNA; SSU-rRNA_Hsa.
XX
OS   Metazoa
OC   Eukaryota.
XX
RN   [1]
RP   1-1869
RA   Smit A.F.;
RT   "SSU-rRNA_Hsa - from Metazoa.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|36162|emb|X03205.1|HSRRN18S Human 18S ribosomal RNA
CC   (deuterostomia, but some metazoa are left out otherwise).
XX
SQ   Sequence 1869 BP; 419 A; 500 C; 549 G; 401 T; 0 other;
     tacctggttg atcctgccag tagcatatgc ttgtctcaaa gattaagcca tgcatgtcta        60
     agtacgcacg gccggtacag tgaaactgcg aatggctcat taaatcagtt atggttcctt       120
     tggtcgctcg ctcctctccc acttggataa ctgtggtaat tctagagcta atacatgccg       180
     acgggcgctg acccccttcg cgggggggat gcgtgcattt atcagatcaa aaccaacccg       240
     gtcagcccct ctccggcccc ggccgggggg cgggcgccgg cggctttggt gactctagat       300
     aacctcgggc cgatcgcacg ccccccgtgg cggcgacgac ccattcgaac gtctgcccta       360
     tcaactttcg atggtagtcg ccgtgcctac catggtgacc acgggtgacg gggaatcagg       420
     gttcgattcc ggagagggag cctgagaaac ggctaccaca tccaaggaag gcagcaggcg       480
     cgcaaattac ccactcccga cccggggagg tagtgacgaa aaataacaat acaggactct       540
     ttcgaggccc tgtaattgga atgagtccac tttaaatcct ttaacgagga tccattggag       600
     ggcaagtctg gtgccagcag ccgcggtaat tccagctcca atagcgtata ttaaagttgc       660
     tgcagttaaa aagctcgtag ttggatcttg ggagcgggcg ggcggtccgc cgcgaggcga       720
     gccaccgccc gtccccgccc cttgcctctc ggcgccccct cgatgctctt agctgagtgt       780
     cccgcggggc ccgaagcgtt tactttgaaa aaattagagt gttcaaagca ggcccgagcc       840
     gcctggatac cgcagctagg aataatggaa taggaccgcg gttctatttt gttggttttc       900
     ggaactgagg ccatgattaa gagggacggc cgggggcatt cgtattgcgc cgctagaggt       960
     gaaattcttg gaccggcgca agacggacca gagcgaaagc atttgccaag aatgttttca      1020
     ttaatcaaga acgaaagtcg gaggttcgaa gacgatcaga taccgtcgta gttccgacca      1080
     taaacgatgc cgaccggcga tgcggcggcg ttattcccat gacccgccgg gcagcttccg      1140
     ggaaaccaaa gtctttgggt tccgggggga gtatggttgc aaagctgaaa cttaaaggaa      1200
     ttgacggaag ggcaccacca ggagtggagc ctgcggctta atttgactca acacgggaaa      1260
     cctcacccgg cccggacacg gacaggattg acagattgat agctctttct cgattccgtg      1320
     ggtggtggtg catggccgtt cttagttggt ggagcgattt gtctggttaa ttccgataac      1380
     gaacgagact ctggcatgct aactagttac gcgacccccg agcggtcggc gtcccccaac      1440
     ttcttagagg gacaagtggc gttcagccac ccgagattga gcaataacag gtctgtgatg      1500
     cccttagatg tccggggctg cacgcgcgct acactgactg gctcagcgtg tgcctaccct      1560
     acgccggcag gcgcgggtaa cccgttgaac cccattcgtg atggggatcg gggattgcaa      1620
     ttattcccca tgaacgagga attcccagta agtgcgggtc ataagcttgc gttgattaag      1680
     tccctgccct ttgtacacac cgcccgtcgc tactaccgat tggatggttt agtgaggccc      1740
     tcggatcggc cccgccgggg tcggcccacg gccctggcgg agcgctgaga agacggtcga      1800
     acttgactat ctagaggaag taaaagtcgt aacaaggttt ccgtaggtga acctgcggaa      1860
     ggatcatta                                                              1869
//
ID   tRNA-Ser-TCG repbase;    DNA;    VRT; 85 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Ser-TCG.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-85
RA   Smit A.F.;
RT   "tRNA-Ser-TCG - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 85 BP; 16 A; 24 C; 27 G; 18 T; 0 other;
     gctgtgatgg ccgagtggtt aaggcgttgg actcgaaatc caatggggtc tccccgcgca        60
     ggttcgaatc ctgctcacag cgcca                                              85
//
ID   tRNA-Ser-TCA_ repbase;    DNA;    VRT; 85 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Ser-TCA_.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-85
RA   Smit A.F.;
RT   "tRNA-Ser-TCA_ - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 85 BP; 16 A; 22 C; 27 G; 20 T; 0 other;
     gtagtcgtgg ccgagtggtt aaggcgatgg acttgaaatc cattggggtt tccccgcgca        60
     ggttcgaatc ctgccgacta cgcca                                              85
//
ID   SSU-rRNA_Giardia repbase;    DNA;    INV; 1464 BP.
XX
AC   .
XX
DE   from Diplomonadida.
XX
KW   rRNA; SSU-rRNA_Giardia.
XX
OS   Diplomonadida
OC   Eukaryota.
XX
RN   [1]
RP   1-1464
RA   Smit A.F.;
RT   "SSU-rRNA_Giardia - from Diplomonadida.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|18996945|gb|AF473852.1| Giardia intestinalis small subunit
CC   ribosomal RNA gene, complete sequence.
XX
SQ   Sequence 1464 BP; 251 A; 510 C; 546 G; 157 T; 0 other;
     catccggtcg atcctgccgg aatccgacgc tatccccaag gatacaagcc atgcatgccc        60
     gcacaccccg aaggcggcag acggctcagg acgacggttg caccccccgc ggcggtccct       120
     gctagccgga caccgctggc aacccggcgc caagacgtgc gcgcaagtgc gggcgcccgc       180
     gggcgagcag cgtgacgcag cgacggcccg cccgggcttc cggggcatca ccccgatggc       240
     gcggttgcgg cccgccatag gagcgacgcc tggcggagaa tcagggttcg actccggaga       300
     gcgggcctga gagacggccc gcacatccaa ggacggcagc aggcgcggaa cttgcccaat       360
     gcgcggcgcg cgaggcagcg acggggagcg cacagagcga ggcgggccca cacgccccgc       420
     cgcggagccg agggcaaggt ctggtgccag cagccgcggt aattccagct cggcgagcgt       480
     cgcgtggcgc tgctgcagtt aaaacgcccg tagttggccc cccgccgccg cgaggaaaag       540
     ggagcgctcc aggcaggccc gttggacccg ccgcgcggga cggcgctgcg ggcgcggcgc       600
     gccgcggcag ccccgaggag agcgggcggg ggcactggta ctggccgggg acgggtggaa       660
     taggatgatc ccgccaagac cgccgggggc gaaggcgtct gccaagaccg cctctgtcaa       720
     tcaagggcga aggtcggggg ctagaaggcg atcagacacc accgtattcc cgaccgtaaa       780
     cggtgccgcc ccgcggccgg cgcgcgtgtc ccgccggccg cccagggaaa ccgggaggct       840
     ccgggctctg gggggagtat ggccgcaagg ctgaaacttg aaggcattga cggaggggta       900
     ccaccagacg tggagtctgc ggctcaatct gactcaacgc gtgcacctca ccaggcccgg       960
     acgcgcggag gaccgacagc cgggtgcgct ttcgcgatcg cgcgggcggt ggtgcatggc      1020
     cgctcccagc ccgtggcgcg agccgtctgc tccattgcga caacgagcga gaccccagcc      1080
     gcggatgccg cgggactgcc cgcgcggagc gggaggaagg cggggcgata gcaggtctgt      1140
     gatgccctca gacgccctgg gctgcacgcg cgctacactg gcggggccag ccggcgcccg      1200
     cgaggacgcg cggagccccc gccgtggccg ggaccgcggg ctggaacgcc cccgtgcacc      1260
     aggaatgtct tgtaggcgcc cgccacgacc gcgcgccgga cgcgtccctg ccccttgtac      1320
     acaccgcccg tcgctcctac cgactgggcg cgcgggcgag cgtcccggac cagcgaaggg      1380
     ccgcgagccc ccgcgcctgg aggaaggaga agtcgtaaca aggtatccgt aggtgaacct      1440
     gcagaaggat caagcttgga tccc                                             1464
//
ID   SSU-rRNA_Ddi repbase;    DNA;    INV; 1871 BP.
XX
AC   .
XX
DE   from Mycetozoa.
XX
KW   rRNA; SSU-rRNA_Ddi.
XX
OS   Mycetozoa
OC   Eukaryota.
XX
RN   [1]
RP   1-1871
RA   Smit A.F.;
RT   "SSU-rRNA_Ddi - from Mycetozoa.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|7348|emb|X00134.1|DDRN04 Dictyostelium discoideum 17S rRNA
CC   sequence.
XX
SQ   Sequence 1871 BP; 531 A; 348 C; 448 G; 544 T; 0 other;
     taactggttg atcctgccag tagtcatatg cttgtctcaa agattaagcc atgcatgtct        60
     aagtataaat tcttgtacga tgaaactgca gacggctcat tacaacagtg ataaactaat       120
     agactttcgg gttttacctt ttggataacc gcagtaaatc ggggctaata catacaagcg       180
     atgggtgact ggcaacggaa gctcagcgat tattagcatt ctaccaatgc cttcgggttt       240
     tgggtgatac cgaataatat tgcagatcga ggatttaatc ttcgacaagt ctactgtgtc       300
     actgccctat caactttcga tggtacggta ttggcctacc atggttgtaa cgggtaacgg       360
     ggaattaggg ttcgattccg gagagggagc ctgagaaatg gctaccactt ctacggaagg       420
     cagcaggcgc gcaaattact caatcccaat acggggaagt agtgacaata aatatcaata       480
     cctatccttt ttggagggca attgaaatga acacaaatta aaactcttaa ttaacacaat       540
     tggagggcaa gtctggtgcc agcagccgcg gtaattccag ctccaattag catatactaa       600
     agttgttgca gttaaaaagc tcgtagttga agtttaaggt ttaccgggtt tatgtcattt       660
     accacttcgt ggttaaatcg acaccggtat ctctttctta atagttcagc ttgtattatc       720
     tttgatagtg cttgtttgga catttcactg tgagaaaatt gtggtgttta aagcaggcgt       780
     ctcgccgtct tttgcagcat ggtatgatga aacatgacat tttacgctat tggtttgcgt       840
     ttaaagtgta atgattaata gggatggatg ggggtgttca tattggtggg cgagaggtga       900
     aattcgttga ccctatcaag atgaacttct gcgaaagcat tcaccaaata cctccccatt       960
     aatcaagaac gaaagtttgg ggatcgaaga cgatcagata ccgtcgtagt ccaaactata      1020
     aactatgtcg accagggatc ggttaaaatt ttttcaaaat ttaatcggca ccttgtgaga      1080
     aatcatgagt gtttagattc cggggggagt atggtcgcaa gtctgaaact taaaggaatt      1140
     gacggaaggg cacacaatgg agtggagcct gcggcttaat ttgactcaac tcgggaaaac      1200
     ttaccaagct aagatatagt aaggattgac agactaaaag atctttcatg attctatgag      1260
     tggtggtgca tggtcgttct tagttggtgg agcgatttgt ctggtcaatt ccgataacgg      1320
     acgagacctc gacctgctaa ctagtagtat ttattagtcg atatagacga tagcttttct      1380
     ggggtttgga atgatttcgg tcatctcctg cttcaaggag tgtgtagtct gactcgatag      1440
     gtacgaatta aaacttctta gagggactac ctgcctcaag caggcggaag tccgaggcaa      1500
     taacaggtct gtgatgccct tagatacctt gggccgcacg cgcgctacaa tgtaggaaac      1560
     aaaaaggctc ctgtccggaa ggattgggta atcatttgaa tttcctacgt aactgggctt      1620
     gatctttgta attattgatc ataaacgagg aattccttgt aagcgtaagt cattacctta      1680
     tgctgaatat gtccctgccc tttgtacaca ccgcccgtcg ctcctaccga tcgaatgata      1740
     cggtaaagtt aacggatcgt tttatctgtg gcaacactga tataaattaa aagttattta      1800
     aatctcattg tttagaggaa ggagaagtcg taacaaggta tccgtaggtg aacctgcgga      1860
     tggatcattt t                                                           1871
//
ID   SSU-rRNA_Ath repbase;    DNA;    PLN; 1902 BP.
XX
AC   .
XX
DE   from Viridiplantae.
XX
KW   rRNA; SSU-rRNA_Ath.
XX
OS   Viridiplantae
OC   Eukaryota.
XX
RN   [1]
RP   1-1902
RA   Smit A.F.;
RT   "SSU-rRNA_Ath - from Viridiplantae.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|16506|emb|X16077.1|ATRRN18 Arabidopsis thaliana 18S rRNA gene
CC   (may split in streptophytes/green algae?).
XX
SQ   Sequence 1902 BP; 474 A; 413 C; 522 G; 493 T; 0 other;
     aaaagatgac ggtcaagacc tcgtcctttc tctctttcca ttgcgtttga gaggatgtgg        60
     cggggaattg ccgtgatcga tgaatgctac ctggttgatc ctgccagtag tcatatgctt       120
     gtctcaaaga ttaagccatg catgtgtaag tatgaacgaa ttcagactgt gaaactgcga       180
     atggctcatt aaatcagtta tagtttgttt gatggtaact actactcgga taaccgtagt       240
     aattctagag ctaatacgtg caacaaaccc cgacttatgg aagggacgca tttattagat       300
     aaaaggtcga cgcgggctct ggcttgctct gatgattcat gataactcga cggatcgcat       360
     ggcctctgtg ctggcgacgc atcattcaaa tttctgccct atcaactttc gatggtagga       420
     tagtggccta ccatggtggt aacgggtgac ggagaattag ggttcgattc cggagaggga       480
     gcctgagaaa cggctaccac atccaaggaa ggcagcaggc gcgcaaatta cccaatcctg       540
     acacggggag gtagtgacaa taaataacaa taccgggctc tttcgagtct ggtaattgga       600
     atgagtacaa tctaaatccc ttaacgagga tccattggag ggcaagtctg gtgccagcag       660
     ccgcggtaat tccagctcca atagcgtata tttaagttgt tgcagttaaa aagctcgtag       720
     ttgaaccttg ggatgggtcg gccggtccgc ctttggtgtg cattggtcgg cttgtccctt       780
     cggtcggcga tacgctcctg gtcttaattg gccgggtcgt gcctccggcg ctgttacttt       840
     gaagaaatta gagtgctcaa agcaagccta cgctctggat acattagcat gggataacat       900
     cataggattt cgatcctatt gtgttggctt cgggatcgga gtaatgatta acagggacag       960
     tcgggggcat tcgtatttca tagtcagagg tgaaattctt ggatttatga aagacgaaca      1020
     actgcgaaag catttgccaa ggatgttttc attaatcaag aacgaaagtt gggggctcga      1080
     agacgatcag ataccgtcct agtctcaacc ataaacgatg ccgaccaggg atcagcggat      1140
     gttgcttata ggactccgct ggcaccttat gagaaatcaa agtttttggg ttccgggggg      1200
     agtatggtcg caaggctgaa acttaaagga attgacggaa gggcaccacc aggagtggag      1260
     cctgcggctt aatttgactc aacacgggga aacttaccag gtccagacat agtaaggatt      1320
     gacagactga gagctctttc ttgattctat gggtggtggt gcatggccgt tcttagttgg      1380
     tggagcgatt tgtctggtta attccgttaa cgaacgagac ctcagcctgc taactagcta      1440
     cgtggaggca tcccttcacg gccggcttct tagagggact atggccgttt aggccaagga      1500
     agtttgaggc aataacaggt ctgtgatgcc cttagatgtt ctgggccgca cgcgcgctac      1560
     actgatgtat tcaacgagtt cacaccttgc cgacaggccc gggtaatctt tgaaatttca      1620
     tcgtgatggg gatagatcat tgcaattgtt ggtcttcaac gaggaattcc tagtaagcgc      1680
     gagtcatcag ctcgcgttga ctacgtccct gccctttgta cacaccgccc gtcgctccta      1740
     ccgattgaat gatccggtga agtgttcgga tcgcggcgac gtgggtggtt cgccgcccgc      1800
     gacgtcgcga gaagtccact aaaccttatc atttagagga aggagaagtc gtaacaaggt      1860
     ttccgtaggt gaacctgcgg aaggatcatt gtcgatacct gt                         1902
//
ID   SSU-rRNA_Dme repbase;    DNA;    INV; 1995 BP.
XX
AC   .
XX
DE   from Metazoa.
XX
KW   rRNA; SSU-rRNA_Dme.
XX
OS   Metazoa
OC   Eukaryota.
XX
RN   [1]
RP   1-1995
RA   Smit A.F.;
RT   "SSU-rRNA_Dme - from Metazoa.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|158246|gb|M21017.1|DRORGAB 1-1995.
XX
SQ   Sequence 1995 BP; 563 A; 375 C; 473 G; 584 T; 0 other;
     attctggttg atcctgccag tagttatatg cttgtctcaa agattaagcc atgcatgtct        60
     aagtacacac gaattaaaag tgaaaccgca aaaggctcat tatatcagtt atggttcctt       120
     agatcgttaa cagttacttg gataactgtg gtaattctag agctaataca tgcaattaaa       180
     acatgaacct tatgggacgt gtgcttttat taggctaaaa ccaagcgatc gcaagatcgt       240
     tatattggtt gaactctaga taacatgcag atcgtatggt cttgtaccga cgacagatct       300
     ttcaaatgtc tgccctatca acttttgatg gtagtatcta ggactaccat ggttgcaacg       360
     ggtaacgggg aatcagggtt cgattccgga gagggagcct gagaaacggc taccacatct       420
     aaggaaggca gcaggcgcgt aaattaccca ctcccagctc ggggaggtag tgacgaaaaa       480
     taacaataca ggactcatat ccgaggccct gtaattggaa tgagtacact ttaaatcctt       540
     taacaaggac caattggagg gcaagtctgg tgccagcagc cgcggtaatt ccagctccaa       600
     tagcgtatat taaagttgtt gcggttaaaa cgttcgtagt tgaacttgtg cttcatacgg       660
     gtagtacaac ttacaattgt ggttagtact atacctttat gtatgtaagc gtattaccgg       720
     tggagttctt atatgtgatt aaatacttgt attttttcat atgttcctcc tatttaaaaa       780
     cctgcattag tgctcttaaa cgagtgttat tgtgggccgg tactattact ttgaacaaat       840
     tagagtgctt aaagcaggct tcaaatgcct gaatattctg tgcatgggat aatgaaataa       900
     gacctctgtt ctgctttcat tggttttcag atcaagaggt aatgattaat agaagcagtt       960
     tgggggcatt agtattacga cgcgagaggt gaaattcttg gaccgtcgta agactaactt      1020
     aagcgaaagc atttgccaaa gatgttttca ttaatcaaga acgaaagtta gaggttcgaa      1080
     ggcgatcaga taccgcccta gttctaacca taaacgatgc cagctagcaa ttgggtgtag      1140
     ctacttttat ggctctctca gtcgcttccg ggaaaccaaa gctttttggg ctccggggga      1200
     agtatggttg caaagctgaa acttaaagga attgacggaa gggcaccacc aggagtggag      1260
     cctgcggctt aatttgactc aacacgggaa aacttaccag gtcgaacata agtgtgtaag      1320
     acagattgat agctctttct cgaatctatg ggtggtggtg catggccgtt cttagttcgt      1380
     ggagtgattt gtctggttaa ttccgataac gaacgagact caaatatatt aaatagatat      1440
     cttcaggatt atggtgctga agcttatgta gccttcattc atgttggcag taaaatgctt      1500
     attgtgtttg aatgtgttta tgtaagtgga gccgtacctg ttggtttgtc ccattataag      1560
     gacactagct tcttaaatgg acaaattgcg tctagcaata atgagattga gcaataacag      1620
     gtctgtgatg cccttagatg tcctgggctg cacgcgcgct acaatgaaag tatcaacgtg      1680
     tatttcctag accgagaggt ccgggtaaac cgctgaacca ctttcatgct tgggattgtg      1740
     aactgaaact gttcacgatg aacttggaat tcccagtaag tgtgagtcat taactcgcat      1800
     tgattacgtc cctgcccttt gtacacaccg cccgtcgcta ctaccgattg aattatttag      1860
     tgaggtctcc ggacgtgatc actgtgacgc cttgcgtgtt acggttgttt cgcaaaagtt      1920
     gaccgaactt gattatttag aggaagtaaa agtcgtaaca aggtttccgt aggtgaacct      1980
     gcggaaggat catta                                                       1995
//
ID   SSU-rRNA_Pfa repbase;    DNA;    INV; 2090 BP.
XX
AC   .
XX
DE   from Alveolata.
XX
KW   rRNA; SSU-rRNA_Pfa.
XX
OS   Alveolata
OC   Eukaryota.
XX
RN   [1]
RP   1-2090
RA   Smit A.F.;
RT   "SSU-rRNA_Pfa - from Alveolata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|160642|gb|M19172.1|PFARGEA Plasmodium falciparum 18S ribosomal
CC   RNA in asexual parasites.
XX
SQ   Sequence 2090 BP; 645 A; 324 C; 420 G; 701 T; 0 other;
     aacctggttg atcttgccag tagtcatatg cttgtctcaa agattaagcc atgcaagtga        60
     aagtatatat atattttata tgtagaaact gcgaacggct cattaaaaca gttatagtct       120
     acttgacatt tttattataa ggataactac ggaaaagctg tagctaatac ttgctttatt       180
     atccttgatt tttatctttg gataagtatt tgttaggcct tataagaaaa aagttattaa       240
     cttaaggaat tataacaaag aagtaacacg taataaattt attttattta gtgtgtatca       300
     atcgagtttc tgacctatca gcttttgatg ttagggtatt ggcctaacat ggctatgacg       360
     ggtaacgggg aattagagtt cgattccgga gagggagcct gagaaatagc taccacatct       420
     aaggaaggca gcaggcgcgt aaattaccca attctaaaga agagaggtag tgacaagaaa       480
     taacaatgca aggccaattt ttggttttgt aattggaatg gtgggaattt aaaaccttcc       540
     cagagtaaca attggagggc aagtctggtg ccagcagccg cggtaattcc agctccaata       600
     gcgtatatta aaattgttgc agttaaaacg ctcgtagttg aatttcaaag aatcgatatt       660
     ttattgtaac tattctaggg gaactatttt agcttttggc tttaatacgc ttcctctatt       720
     attatgttct ttaaataaca aagattcttt ttaaaatccc cacttttgct tttgcttttt       780
     tggggatttt gttactttga gtaaattaga gtgttcaaag caaacagtta aagcatttac       840
     tgtgtttgaa tactatagca tggaataaca aaattgaaca agctaaaatt ttttgttctt       900
     ttttcttatt ttggcttagt tacgattaat aggagtagct tggggacatt cgtattcaga       960
     tgtcagaggt gaaattctta gattttctgg agacgaacaa ctgcgaaagc atttgtctaa      1020
     aatacttcca ttaatcaaga acgaaagtta agggagtgaa gacgatcaga taccgtcgta      1080
     atcttaacca taaactatgc cgactaggtg ttggatgaaa gtgttaaaaa taaaagtcat      1140
     ctttcgaggt gacttttaga ttgcttcctt cagtacctta tgagaaatca aagtctttgg      1200
     gttctggggc gagtattcgc gcaagcgaga aagttaaaag aattgacgga agggcaccac      1260
     caggcgtgga gcttgcggct taatttgact caacacgggg aaactcacta gtttaagaca      1320
     agagtaggat tgacagatta atagctcttt cttgatttct tggatggtga tgcatggccg      1380
     tttttagttc gtgaatatga tttgtctggt taattccgat aacgaacgag atcttaacct      1440
     gctaattagc ggcgagtaca ctatattctt atttgaaatt gaacataggt aactatacat      1500
     ttattcagta atcaaattag gatattttta ttaaaatatc cttttccctg ttctactaat      1560
     aaattgtttt ttactctatt tctctcttct tttaagaatg tacttgcttg attgaaaagc      1620
     ttcttagagg aacattgtgt gtctaacaca aggaagttta aggcaacaac aggtctgtga      1680
     tgtccttaga tgaactaggc tgcacgcgtg ctacactgat atatataacg agtttttaaa      1740
     aatatgctta tatttgtatc tttgatgctt atattttgca tacttttcct ccgccgaaag      1800
     gcgtaggtaa tctttatcaa tatatatcgt gatggggata gattattgca attattaatc      1860
     ttgaacgagg aatgcctagt aagcatgatt catcagattg tgctgactac gtccctgccc      1920
     tttgtacaca ccgcccgtcg ctcctaccga ttgaaagata tgatgaattg tttggacaag      1980
     aaaaattgaa ttatattctt ttttttctgg aaaaaccgta aatcctatct tttaaaggaa      2040
     ggagaagtcg taacaaggtt tccgtaggtg aacctgcgga aggatcatta                 2090
//
ID   U7          repbase;    DNA;    VRT; 63 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   snRNA; U7.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-63
RA   Smit A.F.;
RT   "U7 - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 63 BP; 13 A; 15 C; 13 G; 22 T; 0 other;
     aagtgttaca gctcttttag aatttgtcta gcaggctttc tggcttttca ccggaaagcc        60
     cct                                                                      63
//
ID   tRNALeuCTT_CB repbase;    DNA;    INV; 92 BP.
XX
AC   .
XX
DE   from Caenorhabditis briggsae.
XX
KW   tRNA; tRNALeuCTT_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-92
RA   Smit A.F.;
RT   "tRNALeuCTT_CB - from Caenorhabditis briggsae.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 92 BP; 14 A; 25 C; 29 G; 24 T; 0 other;
     ggagagatgg ccgagcggtc caaggcgctg gtttaaggca ccagtccctt cgggggcgtg        60
     ggttcgaatc ccactctctt cagttccttt tt                                      92
//
ID   SSU-rRNA_Lvi repbase;    DNA;    INV; 1803 BP.
XX
AC   .
XX
DE   from Alveolata.
XX
KW   rRNA; SSU-rRNA_Lvi.
XX
OS   Alveolata
OC   Eukaryota.
XX
RN   [1]
RP   1-1803
RA   Smit A.F.;
RT   "SSU-rRNA_Lvi - from Alveolata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|2501981|gb|AF022199.1| Lepidodinium viride 18S ribosomal RNA
CC   gene, complete sequence.
XX
SQ   Sequence 1803 BP; 478 A; 362 C; 474 G; 489 T; 0 other;
     cacctggttg atcctgccag tagtcatatg cttgtctcaa agattaagcc atgcatgtct        60
     cagtataagc ttctacacgg cgaaactgcg aatggctcat taaaacagtt atcgtttatt       120
     tggtggtcat tcattacatg gataaccatg gtaattctag agctaataca tgcatccaga       180
     cccaacttcg tggaagggtt gtgtttatta ggtacagaac caacccaggc tctgcctggt       240
     cttctggtga ttcatgataa ccgaacgaat cgcatggcat cagctggcga tgaatcattc       300
     aagtttctga cctatcagct tccgacggta gggtattggc ctaccgtggc aatgacgggt       360
     aacggagaat tagggttcga ttccggagag ggagcctgag aaacggctac cacatctaag       420
     gaaggcagca ggcgcgcaaa ttacccaatc ctgacacagg gaggtagtga caagaaataa       480
     caatacaggg catccatgtc ttgtaattgg aatgaataga atttaaatcc ctttatgagt       540
     atcgattgga gggcaagtct ggtgccagca gccgcggtaa ttccagctcc aatagcgtat       600
     attaaagttg ttgcggttaa aaagctcgta gttggatttc tgctgaggac gaccggtccg       660
     ccctctgggt gagcatctgg ttcggccttg gcatcttctt ggggaacgta gctgcacttg       720
     actgtgtggt gcggtatcca ggacttttac tttgaggaaa ttagagtgtt tcaagcaggc       780
     gcacgccttg aatacattag catggaataa taagatagga cctcggttct attttgttgg       840
     tttctagagc tgaggtaatg attaataggg atagttgggg gcattcgtat ttaactgtca       900
     gaggtgaaat tcttggattt gttaaagacg gactactgcg aaagcatttg ccaaggatgt       960
     tttcattgat caagaacgaa agttagggga tcgaagacga tcagataccg tcctagtctt      1020
     aaccataaac catgccgact agagattgga ggtcgttact tatacgactc cttcagcacc      1080
     ttatgagaaa tcaaagtctt tgggttccgg ggggagtatg gtcgcaaggc tgaaacttaa      1140
     aggaattgac ggaagggcac caccaggagt ggagcctgcg gcttaatttg actcaacacg      1200
     gggaaactta ccaggtccag acatagtaag gattgacaga ttgatagctc tttcttgatt      1260
     ctatgggtgg tggtgcatgg ccgttcttag ttggtggagt gatttgtctg gttaattccg      1320
     ttaacgaacg agaccttaac ctgctaaata gttacgcata actgcggtta cgcgggcaac      1380
     ttcttagagg gactttgtat gtctaatgca aggaagtttg aggcaataac aggtctgtga      1440
     tgcccttaga tgttctgggc tgcacgcgcg ctacactgat gcactcaacg agtttacgac      1500
     ctggcccgag agggttgggt aatcttttta aaatgcatcg tgatggggat agattattgc      1560
     aattattaat cttcaacgag gaattcctag taagcgcgag tcatcagctc gtgctgatta      1620
     cgtccctgcc ctttgtacac accgcccgtc gctcctaccg attgagtgat ccggtgaata      1680
     attcggactg cagcaatgtt tggatcccga acgttgcagc ggaaagttta gtgaacctta      1740
     tcacttagag gaaggagaag tcgtaacaag gtttccgtag gtgaacctgc agaaggatca      1800
     agc                                                                    1803
//
ID   U14         repbase;    DNA;    VRT; 87 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   snRNA; U14.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-87
RA   Smit A.F.;
RT   "U14 - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 87 BP; 18 A; 19 C; 22 G; 28 T; 0 other;
     tcgctgtgat gatggattcc aaaaccattc gtagtttcca ccagaagtgc tgtgttggct        60
     agttccttcc ttggatgtct gagcgaa                                            87
//
ID   SSU-rRNA_Lma repbase;    DNA;    INV; 2137 BP.
XX
AC   .
XX
DE   from Euglenozoa.
XX
KW   rRNA; SSU-rRNA_Lma.
XX
OS   Euglenozoa
OC   Eukaryota.
XX
RN   [1]
RP   1-2137
RA   Smit A.F.;
RT   "SSU-rRNA_Lma - from Euglenozoa.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|9587|emb|X53915.1|LMSSRRNA Leishmania major small subunit
CC   ribosomal RNA gene.
XX
SQ   Sequence 2137 BP; 536 A; 494 C; 570 G; 537 T; 0 other;
     tagtcatatg cttgtttcaa ggacttagcc atgcatgcct cagaatcact gcatttgcag        60
     gaatctgcgc atggctcatt acatcagacg taatctgccg caaaaatctt gcggtttccg       120
     caaaattgga taacttggcg aaacgccaag ctaatacatg aaccaaccgg gtgttctcca       180
     ctccagacgg tgggcaacca tcgtcgtgag acgcccagcg aatgaatgac agtaaaacca       240
     atgccttcac tggcagtaac acccagcagt gttgactcaa ttcattccgt gcgaaagccg       300
     gcttgttccg gcgtcttttg acgaacaact gccctatcag ctggtgatgg ccgtgtagtg       360
     gactgccatg gcgttgacgg gagcggggga ttagggttcg attccggaga gggagcctga       420
     gaaatagcta ccacttctac ggagggcagc aggcgcgcaa attgcccaat gtcaaaacaa       480
     aacgatgagg cagcgaaaag aaatagagtt gtcagtccat ttggattgtc atttcaatgg       540
     gggatattta aacccatcca atatcgagta acaattggag gacaagtctg gtgccagcac       600
     ccgcggtaat tccagctcca aaagcgtata ttaatgctgt tgctgttaaa gggttcgtag       660
     ttgaactgtg ggctgtgcag gtttgttcct ggtcgtcccg tccatgtcgg atttggtgac       720
     ccaggccctt gcagcccgtg aacattcaaa gaaacaagaa acacgggagt ggttcctttc       780
     ctgatttacg catgtcatgc atgccagggg gcgtccgtga ttttttactg tgactaaaga       840
     agcgtgacta aagcagtcat ttgacttgaa ttagaaagca tgggataaca aaggagcagc       900
     ctctaggcta ccgtttcggc ttttgttggt tttaaaggtc tattggagat tatggagctg       960
     tgcgacaagt gctttcccat cgcaacttcg gttcggtgtg tggcgccttt gaggggttta      1020
     gtgcgtccgg tgcgagctcc ggttcgtccg gccgtaacgc cttttcaact cacggcctct      1080
     aggaatgaag gagggtagtt cgggggagaa cgtactgggg cgtcagaggt gaaattctta      1140
     gaccgcacca agacgaacta cagcgaaggc attcttcaag gataccttcc tcaatcaaga      1200
     accaaagtgt ggagatcgaa gatgattaga gaccattgta gtccacactg caaacgatga      1260
     cacccatgaa ttggggatct tatgggccgg cctgcggcag ggtttaccct gtgtcagcac      1320
     cgcgcccgct tttaccaact tacgtatctt ttctattcgg cctttaccgg ccacccacgg      1380
     gaatatcctc agcacgtttt ctgttttttc acgcgaaagc tttgaggtta cagtctcagg      1440
     ggggagtacg ttcgcaagag tgaaacttaa agaaattgac ggaatggcac cacaagacgt      1500
     ggagcgtgcg gtttaatttg actcaacacg gggaacttta ccagatccgg acaggatgag      1560
     gattgacaga ttgagtgttc tttctcgatt ccctgaatgg tggtgcatgg ccgcttttgg      1620
     tcggtggagt gatttgtttg gttgattccg tcaacggacg agatccaagc tgcccagtag      1680
     aattcagaat tgcccataga atagcaaact catcggcggg ttttacccaa cggtgggccg      1740
     cattcggtcg aattcttctc tgcgggattc ctttgtaatt gcacaaggtg aaattttggg      1800
     caacagcagg tctgtgatgc tcctcaatgt tctgggcgac acgcgcacta caatgtcagt      1860
     gagaacaaga aaaacgactt ttgtcgaacc tacttgatca aaagagtggg gaaaccccgg      1920
     aatcacatag acccacttgg gaccgaggat tgcaattatt ggtcgcgcaa cgaggaatgt      1980
     ctcgtaggcg cagctcatca aactgtgccg attacgtccc tgccatttgt acacaccgcc      2040
     cgtcgttgtt tccgatgatg gtgcaataca ggtgatcgga caggcggtgt tttatccgcc      2100
     cgaaagttca ccgatatttc ttcaatagag gaagcaa                               2137
//
ID   tRNA-Leu-TTG repbase;    DNA;    VRT; 86 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Leu-TTG.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-86
RA   Smit A.F.;
RT   "tRNA-Leu-TTG - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 86 BP; 17 A; 23 C; 27 G; 19 T; 0 other;
     gtcaggatgg ccgagtggtc taaggcgcca gactcaagtt ctggtctccg atggaggcgt        60
     gggttcgaat cccacttctg acacca                                             86
//
ID   LSU-rRNA_Tps repbase;    DNA;    PLN; 791 BP.
XX
AC   .
XX
DE   from stramenopiles.
XX
KW   rRNA; LSU-rRNA_Tps.
XX
OS   stramenopiles
OC   Eukaryota.
XX
RN   [1]
RP   1-791
RA   Smit A.F.;
RT   "LSU-rRNA_Tps - from stramenopiles.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|62120075|emb|AJ633506.1| Thalassiosira sp. B101 28S rRNA gene,
CC   strain SZN-B101.
XX
SQ   Sequence 791 BP; 199 A; 159 C; 234 G; 199 T; 0 other;
     ctaacaagga ttcccctagt atcggcgagt gaagcgggaa gagctcacca tgtgaatctg        60
     cgtaaccttc gggtgcgccg aattgtggtc tggagtagta ttgtcggccg agtttccggg       120
     ccaagtctct tggaaaaggg cagctgagag ggtgaaactc ccgttcttgc ctggaaactt       180
     tgtgctctgg cacatgctta ctatgagtcg agttgcttgg gattgcagct caaatttggt       240
     ggtaaattcc atctaaagct aaatattggt gggataccga tagtgcacaa gtaccgtgag       300
     ggaaagatgc aaagaacttt gaaaagagag ttaaagagta cctgaaattg ttgaaaggga       360
     agcgaaggaa accagtgccg aagctttgtc atacttctct tgccacttgt ggtaagggcg       420
     ctgtggcttt gcatgggtca gcatcggctt tttgcctggg gtaaaccttt ggtaggtaga       480
     cggccctctt atggggtgag tgcctatcat tgatatcctg ggttaggctg aggtcagtca       540
     ctctgtgctc gtgatgctgg caaaatggtt ttctttaccc cgtcttgaaa cacggaccaa       600
     ggagtctaac atatgtgcaa gtacaaaggt ggcaaacctg cgtgcataat gaaagtaaca       660
     gtggttggat cccttcgggg tgcacaatcc gccggccaac atccttcggg agaaaggtct       720
     gagtgtgagc atacatgttg ggacccgaaa gatggtgaac tatgcctgag tagggcgaag       780
     ccaggggaaa c                                                            791
//
ID   tRNA-Gln-CAG repbase;    DNA;    VRT; 75 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Gln-CAG.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-75
RA   Smit A.F.;
RT   "tRNA-Gln-CAG - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 75 BP; 17 A; 19 C; 20 G; 19 T; 0 other;
     ggttccatgg tgtaatggta agcactctgg actctgaatc cagcgatccg agttcaagtc        60
     tcggtggaac ctcca                                                         75
//
ID   LSU-rRNA_Pfa repbase;    DNA;    INV; 3788 BP.
XX
AC   .
XX
DE   from Alveolata.
XX
KW   rRNA; LSU-rRNA_Pfa.
XX
OS   Alveolata
OC   Eukaryota.
XX
RN   [1]
RP   1-3788
RA   Smit A.F.;
RT   "LSU-rRNA_Pfa - from Alveolata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   PFU21939_417_4204 Plasmodium.
XX
SQ   Sequence 3788 BP; 1151 A; 623 C; 784 G; 1230 T; 0 other;
     gtttgatttg atgttaggag ggcaaatccg ccgaatttaa gcatataatt aagcggaaga        60
     aaagaaaata actatgattc ctttagtaac ggcgagtgaa caaggaccag ctcaaacggt       120
     taatccttcg tttggtgcaa acctttcgac ggaattgtcg ttgaattatt ccatgaatgc       180
     ctttaatttg agcaaagtga gcaggaatgc ttccccatag agggtgaaag gcccatagtt       240
     ctttttaatt tattcattgg aatttttcat gccgagtcgt gttctttgag attggagcac       300
     taatacgtgt gatacatttc acataaagct aaatatgtgt aggagaccga tagcaaacaa       360
     gtaccgtgag ggaaagatga aatagtactc aggaatgagc aattaaatag tacctgaaat       420
     cgttaagatg gaacggatta agagagaaaa caagtaaaga ggggaatttt taattttttt       480
     tgttataatt ctcttcttta ttaaaagaaa catcagtgat taatttaatt tcaataaagc       540
     aatcccctga aattcaaaat ttcttttaat tttcttttca ctttctcccc gcactaatgt       600
     ggggaaaact ggctttattt cttcaattat tttttttgct gaggaatttt aaaattattt       660
     gaatttttct tcttataatt taagttgttt ctatatagta ctttcttaac ccactcgtct       720
     tgaaacacgg accaaggagt ctagcaaatg tgcaagtgta tatgattctt taaacatttc       780
     tctttttaat atacgcataa ttaatgtaat atgtttcttt attgtagatt tgtgtggtgt       840
     ttaattttta ttaaatcccc actttgcata catccggtaa gcaattatgc tttattgagt       900
     acgagcatat ttggtaggac ccgagaggct ttgaactaag cgtgatgaga ttgaagtcag       960
     acgaaagtct gatggaggat cgagttgata ctgacgtgca aatcgttcat ttcaatcacg      1020
     tttaggggcg aaagactaat cgaaaagcct attagctggt tattttcgaa agatctctca      1080
     ggatcgctgg agttgaatta atataatttt accaggtaga gataatgatt agaggaatca      1140
     gggaaatcgt tttccttgac ctattctcaa actcccaata ggtaaaaagg gcgaaataac      1200
     tcaacttgta tttcactcat attaaataaa ataactccaa gtgggccatt tttggtaagc      1260
     agaactggcg atgagggatg ctcctaacgc ttggataagg tgcctaaata ttcgctcatg      1320
     agatcccata aaaggtgttg gttcataatg acagtaggac ggtggtcatg gaagtcgaaa      1380
     tccgctaagg agtgtgtaac aactcaccta ccgaatgaac tagccctgaa aatggatggc      1440
     gctaaagcgg attaccgata ccaagccata aaaagaacag aaaaaattta tttttttttt      1500
     agaatctttt tatgagtaga aaatcgtggg gtttgtgttg aagcgaaata cgtgagtttt      1560
     cgtggaacat ctccctagtg cagatcttgg tggaagtagc aactattcaa aatgagaact      1620
     ttgaagactg aagtggagaa gggtttcttg tcaactgtga ttgaacaaga gttagccgct      1680
     cctaagggat agctgaaaag tgtttaaaag ggggttcctt ccccgtctca aaagggaaac      1740
     aggttgatat tcctgtgcca atagtattat gagtttctta gatggtaaca tatatataaa      1800
     tgaactcctt tacataggct ttacactcgg ggtgcgtttt ctttgcactt tacctttata      1860
     acaaaccttg gaatcaattt acttggagaa gaggttcgtt gaactcaatt caaaaaattt      1920
     cttgaacggg gttttcggat tcagttcatt ttattttttg ttttgtagca atagtaattc      1980
     gtttttatga attatccgaa gtggtaagga ctatccttga aaaaaggagg gaacggcttt      2040
     gtaaacttgg tttcttctga ttccattttg ctttgctata ctcttaatac ttgtatgagc      2100
     gtaccaacaa ccgcatcagg tctccaaggt taacagcctc tggttaaata gaaaaaagta      2160
     ggtaagggaa gtcggcaaaa atagatccgt aacttcggga aaaggattgg ctctgaggac      2220
     attagaaaag agaagaaaaa aagagggtcg aaaataaaat tgcagtctta tttgcttttc      2280
     tttcgatttg cttgtaatct gctttttctt tttcttcttt ctttttttct ccccctcttt      2340
     tcgccttcac tttattgtaa ttttattact ttaatttgat acctataatg ttaactcaga      2400
     actgaaacgg acaaggggaa tccgactgtt taattaaaac atagcattgt gaaaagccac      2460
     aactggtatt aacacaatgt gatttctgcc cagtgctttg aatgtcaact tgatgaaatt      2520
     caatcaagcg caggtaaacg gcgggagtaa ctatgactct cttaaggtag ccaaatgcct      2580
     cgtcatctaa ttagtgacgc gcatgaatgg attaacgaga ttcccactgt ccctacttgc      2640
     tatctagcga aaccacagcc aagggaacgg gcttggcaaa atcagcgggg aaagaagacc      2700
     ctgttgagct ttactctagt ctggctttgt gaaacgactt aagaggtgta gcataagtgg      2760
     gagtagaaac tgaaatatgt ttttacgaca gtgaaatacc actactttta aagttgtttt      2820
     acttatccat ttatagggaa atatattatg ctttatcctt cgggaaggca ttctgatatt      2880
     atttgaattt ttaagaaact tgtttcttat ttttctccca tttctatgga gacatagcca      2940
     ggtggggagt ttgactgggg cggtacatct gttaaatatt aacgcagatg tccaaagaca      3000
     agctcaaaga gaacagaaat ctcttgtaga ctaaaagggg aaaagcttgt ttgatttcta      3060
     ttttcagaac aagtagaaaa cgtgaaagcg tggcctatcg atcctttata tttgcaaaat      3120
     gacgtaaatt acttactact gtgcatatag aggtgtctga aaagttacca cagggataac      3180
     tggcttgtgg ctgccaagcg ctcctagcga cgtagctttt tgatccttcg atgtcggctc      3240
     ttcctatcat tgggacgcag aagtctcaaa gtgtcggatt gttcacccgc taatagggaa      3300
     cgtgagctgg gtttagaccg tcgtgagaca ggttagtttt accctactga tgaattttat      3360
     tatatttttt atatatacat atagtattgt gacagtaatc caacttggta cgagaggatt      3420
     agttggttca gacaattggt acagcaattg gttgacaaac cagtgttgcg aacgtaagtc      3480
     tgttggataa tggctgaacg cctcttaagc cagaaaccat gctgattaaa caatactatt      3540
     tcgttctttt ttgtttcctt ttttactgct aatgtaaaag agaaattata tatgtacctt      3600
     tttttggtac ataaataatc ctatcacctt tttcgtgagc tgtgagctgt gagctaggca      3660
     atagttcttt aacaacaaaa aagaattgca caaactgtag acgacttttt tgcctcaggg      3720
     tgctgtaaac atgaaagtaa actttgtttt acgatctgtt gaggcttatc cctagtggta      3780
     aagtgttt                                                               3788
//
ID   tRNA-Gln-CAA repbase;    DNA;    VRT; 75 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Gln-CAA.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-75
RA   Smit A.F.;
RT   "tRNA-Gln-CAA - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 75 BP; 16 A; 19 C; 20 G; 20 T; 0 other;
     ggtcccatgg tgtaatggtt agcactctgg actttgaatc cagcaatccg agttcgaatc        60
     tcggtgggac ctcca                                                         75
//
ID   tRNA-Arg-CGY repbase;    DNA;    VRT; 77 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Arg-CGY.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-77
RA   Smit A.F.;
RT   "tRNA-Arg-CGY - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 77 BP; 22 A; 16 C; 18 G; 21 T; 0 other;
     gcagaattag ttcaaacgga tagagcagca acctacgaag ttgtttgtta ggggttcgaa        60
     tcccttattc tgcacca                                                       77
//
ID   tRNA-Tyr-TAC repbase;    DNA;    VRT; 76 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Tyr-TAC.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-76
RA   Smit A.F.;
RT   "tRNA-Tyr-TAC - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 76 BP; 15 A; 19 C; 24 G; 18 T; 0 other;
     ccttcgatag ctcagctggt agagcggagg actgtagatc cttaggtcgc tggttcgatt        60
     ccggctcgaa ggacca                                                        76
//
ID   tRNA-Tyr-TAT repbase;    DNA;    VRT; 76 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Tyr-TAT.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-76
RA   Smit A.F.;
RT   "tRNA-Tyr-TAT - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 76 BP; 18 A; 17 C; 20 G; 21 T; 0 other;
     ccttcaatag ttcagctggt agagcagagg actatagctc cttaggttgc tggttcgatt        60
     ccagcttgaa ggacca                                                        76
//
ID   SSU-rRNA_Tps repbase;    DNA;    PLN; 1804 BP.
XX
AC   .
XX
DE   from stramenopiles.
XX
KW   rRNA; SSU-rRNA_Tps.
XX
OS   stramenopiles
OC   Eukaryota.
XX
RN   [1]
RP   1-1804
RA   Smit A.F.;
RT   "SSU-rRNA_Tps - from stramenopiles.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|21729619|gb|AF374481.2| Thalassiosira pseudonana 18S ribosomal
CC   RNA gene, partial sequence.
XX
SQ   Sequence 1804 BP; 482 A; 358 C; 468 G; 496 T; 0 other;
     aacctggttg atcctgccag tagtcatacg ctcgtctcaa agattaagcc atgcatgtct        60
     aagtacaacc attatacagg aaaactgcga acggctcatt atatcagtta ttgtttcttt       120
     gatagtccct tactacttgg atacctgtag taattctaga gctaatacat gcatcaatac       180
     ccgactgttc gcggaagggt agtatttatt aggtatagac caaccgtctt cgggacgtgc       240
     tttggtgatt cataataact tatcggatcg catggctcca tgccggcgat ggatcattca       300
     agtttctgcc ctatcagctt tggatggtag tgtattggac taccatggct ttaacgggta       360
     acgaattgtt agggcaagat ttcggagagg gagcctgaga gacggctacc acatccaagg       420
     aaggcagcag gcgcgtaaat tacccaatac tgaaacagtg aggtagtgac aataaataac       480
     aatgccgggc ctttacaggt ctggcaattg gaatgagaac aatttaaatc ccttatcgag       540
     tatcaattgg agggcaagtc tggtgccagc agccgcggta attccagctc caatagcgta       600
     tattaaagtt gttgcagtta aaaagctcgt agttggattt ctggcgggag cgaccggtct       660
     cacactcagt gcgagaactc gtgttgtctc tggccatcct tggggatatc ctgtttggca       720
     ttaagttgtc gggcagggga tacccatcgt ttactgtgaa aaaattagag tgtttaaagc       780
     aggcttatgc cgttgaatat attagcatgg aataataaga taggaccctg gtactatttt       840
     gttggtttgc gcaccggggt aatgattaaa agagacaggc ggggctattc gtattgcatt       900
     gtcagaggtg aaattcttgg atttctgcaa gacgaactac tgcgaaagca tttagcaagg       960
     atgttttcat taatcaagaa cgaaagttag gggatcgagg atgattagat accatcgtag      1020
     tcttaaccat aaactatgcc gactcgggat tggcggttgt tttttgactc cgccagcacc      1080
     gtatgagaaa tcaaagtctt tgggttccgg ggggagtatg gtcgcaaggc tgaaacttaa      1140
     agaaattgac ggaagggcac caccaggagt ggagcctgcg gcttaatttg actcaacacg      1200
     ggaaaactta ccaggtccag acatagtgag gattgacaga ttgagagttc tttcttgatt      1260
     ctatgggtgg tggtgcatgg ccgttcttag ttggtggagt gatttgtctg gttaattccg      1320
     ttaacgaacg agaccgccgc ctgctaaata gttctgcgaa tggtttttca ttggcaagag      1380
     cttcttagag ggacgttcat tctacaagat gaaggaagat ggcggcaata acaggtctgt      1440
     gatgccctta gatgtcctgg gccgcacgcg cgctacactg atgcactcaa cgagcatata      1500
     accttggccg agaggcctgg gtaatcttgt taacatgcat cgtgataggg atagattatt      1560
     gcaattatta atcttgaacg aggaattcct agtaatcgca gatcatcaat ctgcaatgat      1620
     tacgtccctg ccctttgtac acaccgcccg tcgcacctac cgattggatg gtccggtgag      1680
     gagtcgagat tgtggcctgg ttcctttatt gggatttggc tacgagaact tctccaaacc      1740
     ttatcatcta gaggaaggtg aagtcgtaac aaggtttccg taggtgaacc tgcagaagga      1800
     tcaa                                                                   1804
//
ID   SSU-rRNA_Sce repbase;    DNA;    PLN; 1798 BP.
XX
AC   .
XX
DE   from Fungi.
XX
KW   rRNA; SSU-rRNA_Sce.
XX
OS   Fungi
OC   Eukaryota.
XX
RN   [1]
RP   1-1798
RA   Smit A.F.;
RT   "SSU-rRNA_Sce - from Fungi.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|4347|emb|V01335.1|SCRNA5 Yeast 18S ribosomal RNA.
XX
SQ   Sequence 1798 BP; 480 A; 349 C; 458 G; 511 T; 0 other;
     tatctggttg atcctgccag tagtcatatg cttgtctcaa agattaagcc atgcatgtct        60
     aagtataagc aatttataca gtgaaactgc gaatggctca ttaaatcagt tatcgtttat       120
     ttgatagttc ctttactaca tggtataacc gtggtaattc tagagctaat acatgcttaa       180
     aatctcgacc ctttggaaga gatgtattta ttagataaaa aatcaatgtc ttcgcactct       240
     ttgatgattc ataataactt ttcgaatcgc atggccttgt gctggcgatg gttcattcaa       300
     atttctgccc tatcaacttt cgatggtagg atagtggcct accatggttt caacgggtaa       360
     cggggaataa gggttcgatt ccggagaggg agcctgagaa acggctacca catccaagga       420
     aggcagcagg cgcgcaaatt acccaatcct aattcaggga ggtagtgaca ataaataacg       480
     atacagggcc cattcgggtc ttgtaattgg aatgagtaca atgtaaatac cttaacgagg       540
     aacaattgga gggcaagtct ggtgccagca gccgcggtaa ttccagctcc aatagcgtat       600
     attaaagttg ttgcagttaa aaagctcgta gttgaacttt gggcccggtt ggccggtccg       660
     attttttcgt gtactggatt tccaacgggg cctttccttc tggctaacct tgagtccttg       720
     tggctcttgg cgaaccagga cttttacttt gaaaaaatta gagtgttcaa agcaggcgta       780
     ttgctcgaat atattagcat ggaataatag aataggacgt ttggttctat tttgttggtt       840
     tctaggacca tcgtaatgat taatagggac ggtcgggggc atcggtattc aattgtcgag       900
     gtgaaattct tggatttatt gaagactaac tactgcgaaa gcatttgcca aggacgtttt       960
     cattaatcaa gaacgaaagt taggggatcg aagatgatct ggtaccgtcg tagtcttaac      1020
     cataaactat gccgactaga tcgggtggtg tttttttaat gacccactcg gtaccttacg      1080
     agaaatcaaa gtctttgggt tctgggggga gtatggtcgc aaggctgaaa cttaaaggaa      1140
     ttgacggaag ggcaccacta ggagtggagc ctgcggctaa tttgactcaa cacggggaaa      1200
     ctcaccaggt ccagacacaa taaggattga cagattgaga gctctttctt gattttgtgg      1260
     gtggtggtgc atggccgttt ctcagttggt ggagtgattt gtctgcttaa ttgcgataac      1320
     gaacgagacc ttaacctact aaatagtggt gctagcattt gctggttatc cacttcttag      1380
     agggactatc ggtttcaagc cgatggaagt ttgaggcaat aacaggtctg tgatgccctt      1440
     agaacgttct gggccgcacg cgcgctacac tgacggagcc agcgagtcta accttggccg      1500
     agaggtcttg gtaatcttgt gaaactccgt cgtgctgggg atagagcatt gtaattattg      1560
     ctcttcaacg aggaattcct agtaagcgca agtcatcagc ttgcgttgat tacgtccctg      1620
     ccctttgtac acaccgcccg tcgctagtac cgattgaatg gcttagtgag gcctcaggat      1680
     ctgcttagag aagggggcaa ctccatctca gagcggagaa tttggacaaa cttggtcatt      1740
     tagaggaact aaaagtcgta acaaggtttc cgtaggtgaa cctgcggaag gatcatta        1798
//
ID   SSU-rRNA_Cel repbase;    DNA;    INV; 1647 BP.
XX
AC   .
XX
DE   from Metazoa.
XX
KW   rRNA; SSU-rRNA_Cel.
XX
OS   Metazoa
OC   Eukaryota.
XX
RN   [1]
RP   1-1647
RA   Smit A.F.;
RT   "SSU-rRNA_Cel - from Metazoa.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|34105848|gb|AY284652.1| Caenorhabditis elegans isolate
CC   CaenEle1 18S small subunit ribosomal RNA gene, partial sequence.
XX
SQ   Sequence 1647 BP; 418 A; 337 C; 439 G; 453 T; 0 other;
     ttgattcatc aatgaaattg cgtacggctc attagagcag atatcacctt atccgggatc        60
     ctcatatgga taactgcgga aatactggag ctaatacatg caactatacc ccaacgcaag       120
     gcggggtgca attattagaa cagaccaaac gttttcggac gttgtttgtt gactctgaat       180
     aaagcagttt actgtcagtt tcgactgact ctatccggaa agggtgtctg ccctttcaac       240
     tagatggtag tttattggac taccatggtt gttacgggta acggagaata agggttcgac       300
     tccggagagg gagccttaga aacggctacc acgtccaagg aaggcagcag gcgcgaaact       360
     tatccactgt tgagtatgag atagtgacta aaaatataaa gactcatcct tttggatgag       420
     ttatttcaat gagttgaata caaatgattc ttcgagtagc aaggagaggg caagtctggt       480
     gccagcagcc gcggtaattc cagctctcct agtgtatctc gttattgctg cggttaaaaa       540
     gctcgtagtt ggatctaggt tacgtgccgc agttcgcaat ttgcgtcaac tgtggtcgtg       600
     acttctaatt tgctggtttg aggttgggtt cgcccttcaa ctgccagcag gtttaccttg       660
     aataaatcag agtgctcaat acaagcgctt gcttgaatag ctcatcatgg aataatgaaa       720
     caggacttcg gttctttttg ttggttctag aactgattta atggttaaga gggacaaacc       780
     gggggcattc gtatcattac gcgagaggtg aaattcgtgg accgtagtga gacgcccaac       840
     agcgaaagca tttgccaaga atgtcttcat taatcaagaa cgaaagtcag aggttcgaag       900
     gcgattagat accgccctag ttctgaccgt aaacgatgcc atctcgcgat tcggagggtt       960
     tttgccctgc cgaggagcta tccggaaacg aaagtctttc ggttccgggg gtagtatggt      1020
     tgcaaagctg aaacttaaag aaattgacgg aagggcacca caaggcgtgg agcttgcggc      1080
     ttaatttgac tcaacacggg aaaactcacc cggtccggac accattagga ctgacagatt      1140
     gaaagctctt tctcgatttg gtggttggtg gtgcatggcc gttcttagtt ggtggagtga      1200
     tttgtctggt ttattccgat aacgagcgag actctagcct gctaaatagt tggcgaatct      1260
     tcgggttcgt ataacttctt agagggataa gcggtgttta gccgcacgag attgagcgat      1320
     aacaggtctg tgatgccctt agatgtccgg ggctgcacgc gtgctacact ggtggagtca      1380
     gcgggttttt cctatgccga aaggtatcgg taaaccgttg aaattcttcc atgtccggga      1440
     tagggtattg taattattgc ccttaaacga ggaatgccta gtaagtgtga gtcatcagct      1500
     cacgttgatt acgtccctgc cctttgtaca caccgcccgt cgctatccgg gactgaactg      1560
     attcgagaag agtggggact gtcgcttcga ggtttaacga cttcgttgtt gcggaaacca      1620
     tttttatcgc attggtttga accgggt                                          1647
//
ID   LSU-rRNA_Sce repbase;    DNA;    PLN; 3798 BP.
XX
AC   .
XX
DE   from Fungi.
XX
KW   rRNA; LSU-rRNA_Sce.
XX
OS   Fungi
OC   Eukaryota.
XX
RN   [1]
RP   1-3798
RA   Smit A.F.;
RT   "LSU-rRNA_Sce - from Fungi.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|172409|gb|J01355.1|YSCRGIH5 Saccharomyces cerevisiae 25S
CC   ribosomal RNA gene, complete sequence.
XX
SQ   Sequence 3798 BP; 1013 A; 715 C; 1051 G; 1019 T; 0 other;
     gtttgacctc aaatcaggta ggagtacccg ctgaacttaa gcatatcaat aagcggagga        60
     aaagaaacca accggattgc cttagtaacg gcgagtgaag cggcaaaagc tcaaatttga       120
     aatctggtac cttcggtgcc cgagttgtaa tttggagagg gcaactttgg ggccgttcct       180
     tgtctatgtt ccttggaaca ggacgtcata gagggtgagc atcccgtgtg gcgaggagtg       240
     cggttctttg taaagtgcct tcgaagagtc gagttgtttg ggaatgcagc tctaagtggg       300
     tggtaaattc catctaaagc taaatattgg cgagagaccg atagcgaaca agtacagtga       360
     tggaaagatg aaaagaactt tgaaaagaga gtgaaaaagt acgtgaaatt gttgaaaggg       420
     aagggcattt gatcagacat ggtgttttgt gccctctgct ccttgtgggt aggggaatct       480
     cgcatttcac tgggccagca tcagttttgg tggcaggata aatccatagg aatgtagctt       540
     gcctcggtaa gtattatagc ctgtgggaat actgccagct gggactgagg actgcgacgt       600
     aagtcaagga tgctggcata atggttatat gccgcccgtc ttgaaacacg gaccaaggag       660
     tctaacgtct atgcgagtgt ttgggtgtaa aacccatacg cgtaatgaaa gtgaacgtag       720
     gttggggcct cgcaagaggt gcacaatcga ccgatcctga tgtcttcgga tggatttgag       780
     taagagcata gctgttggga cccgaaagat ggtgaactat gcctgaatag ggtgaagcca       840
     gaggaaactc tggtggaggc tcgtagcggt tctgacgtgc aaatcgatcg tcgaatttgg       900
     gtataggggc gaaagactaa tcgaaccatc tagtagctgg ttcctgccga agtttccctc       960
     aggatagcag aagctcgtat cagttttatg aggtaaagcg aatgattaga ggttccgggg      1020
     tcgaaatgac cttgacctat tctcaaactt taaatatgta agaagtcctt gttacttaat      1080
     tgaacgtgga catttgaatg aagagctttt agtgggccat ttttggtaag cagaactggc      1140
     gatgcgggat gaaccgaacg tagagttaag gtgccggaat acacgctcat cagacaccac      1200
     aaaaggtgtt agttcatcta gacagccgga cggtggccat ggaagtcgga atccgctaag      1260
     gagtgtgtaa caactcaccg gccgaatgaa ctagccctga aaatggatgg cgctcaagcg      1320
     tgttacctat actctaccgt cagggttgat atgatgccct gacgagtagg caggcgtgga      1380
     ggtcagtgac gaagcctaga ccgtaaggtc gggtcgaacg gcctctagtg cagatcttgg      1440
     tggtagtagc aaatattcaa atgagaactt tgaagactga agtggggaaa ggttccacgt      1500
     caacagcagt tggacgtggg ttagtcgatc ctaagagatg gggaagctcc gtttcaaagg      1560
     cctgatttta tgcaggccac catcgaaagg gaatccggta agattccgga acttggatat      1620
     ggattcttca cggtaacgta actgaatgtg gagacgtcgg cgcgagccct gggaggagtt      1680
     atcttttctt cttaacagct tatcaccccg gaattggttt atccggagat ggggtcttat      1740
     ggctggaaga ggccagcacc tttgctggct ccggtgcgct tgtgacggcc cgtgaaaatc      1800
     cacaggaagg aatagttttc atgctaggtc gtactgataa ccgcagcagg tctccaaggt      1860
     gaacagcctc tagttgatag aataatgtag ataagggaag tcggcaaaat agatccgtaa      1920
     cttcgggata aggattggct ctaagggtcg ggtagtgagg gccttggtca gacgcagcgg      1980
     gcgtgcttgt ggactgcttg gtggggcttg ctctgctagg cggactactt gcgtgccttg      2040
     ttgtagacgg ccttggtagg tctcttgtag accgtcgctt gctacaatta acagatcaac      2100
     ttagaactgg tacggacaag gggaatctga ctgtctaatt aaaacatagc attgcgatgg      2160
     tcagaaagtg atgttgacgc aatgtgattt ctgcccagtg ctctgaatgt caaagtgaag      2220
     aaattcaacc aagcgcgagt aaacggcggg agtaactatg actctcttaa ggtagccaaa      2280
     tgcctcgtca tctaattagt gacgcgcatg aatggattaa cgagattccc actgtcccta      2340
     tctactatct agcgaaacca cagccaaggg aacgggcttg gcagaatcag cggggaaaga      2400
     agaccctgtt gagcttgact ctagtttgac attgtgaaga gacatagagg gtgtagaata      2460
     agtgggagct tcggcgccag tgaaatacca ctacctttat agtttcttta cttattcaat      2520
     gaagcggagc tggaattcat tttccacgtt ctagcattca aggtcccatt cggggctgat      2580
     ccgggttgaa gacattgtca ggtggggagt ttggctgggg cggcacatct gttaaacgat      2640
     aacgcagatg tcctaagggg ggctcatgga gaacagaaat ctccagtaga acaaaagggt      2700
     aaagcccctt agtttgattt cagtgtgaat acaaaccatt gaaagtgtgg cctatcgatc      2760
     ctttagtccc tcggaatttg aggctagagg tgccagaaaa gttaccacag ggataactgg      2820
     cttgtggcag tcaagcgttc atagcgacat tgctttttga ttcttcgatg tcggctcttc      2880
     ctatcatacc gaagcagaat tcggtaagcg ttggattgtt cacccactaa tagggaacat      2940
     gagctgggtt tagaccgtcg tgagacaggt tagttttacc ctactgatga atgttaccag      3000
     caatagtaat tgaacttagt acgagaggaa cagttcattc ggataattgg tttttgcggc      3060
     tgtctgatca ggcattgccg cgaagcacca tccgctggat tatggctgaa cgcctctaag      3120
     tcagaatcca tgctagaacg cggtgatttc tttgctccac acaatataga tggatacgaa      3180
     taaggcgtcc ttgtggcgtc gctgaaccat agcaggctag caacggtgca cttggcggaa      3240
     aggccttggg tgcttgctgg cgaattgcaa tgtcattttg cgtggggata aatcatttgt      3300
     atacgactta gatgtacaac ggggtattgt aagcggtaga gtagccttgt tgttacgatc      3360
     tgctgagatt aagcctttgt tgtctgattt gttttttatt tctttctaag tgggtactgg      3420
     caggagccgg ggcctagttt agagagaagt agactcaaca agtctctata aattttattt      3480
     gtcttaagaa ttctatgatc cgggtaaaaa catgtattgt atatatctat tataatatac      3540
     gatgaggatg atagtgtgta agagtgtacc atttactaat gtatgtaagt tactatttac      3600
     tatttggtct ttttattttt tatttttttt ttttttttcg ttgcaaagat gggttgaaag      3660
     agaagggctt tcacaaagct tcccgagcgt gaaaggattt gcccggacag tttgcttcat      3720
     ggagcagttt tttccgcacc atcagagcgg caaacatgag tgcttgtata agtttagaga      3780
     attgagaaaa gctcattt                                                    3798
//
ID   LSU-rRNA_Ldo repbase;    DNA;    INV; 990 BP.
XX
AC   .
XX
DE   from Euglenozoa.
XX
KW   rRNA; LSU-rRNA_Ldo.
XX
OS   Euglenozoa
OC   Eukaryota.
XX
RN   [1]
RP   1-990
RA   Smit A.F.;
RT   "LSU-rRNA_Ldo - from Euglenozoa.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|308891|gb|L19408.1|LEIRR24S Leishmania donovani 24S ribosomal
CC   RNA alpha subunit.
XX
SQ   Sequence 990 BP; 272 A; 214 C; 290 G; 214 T; 0 other;
     agagtaggaa gaccgatagc gaacaagtag cgtgagcgaa agtttgaaaa gcactttgga        60
     aagagagtga aatagaacct gaagtcgtga caaagacaat ggaagtacct ccatttcaac       120
     ggccagaacc agccctactg cattatcctg tcgggggtca aaatccggcg ggcaacgaag       180
     tgcaagaatt ttgggtcttg gtgaaatgag cggagtattt gagctgtgca cggcgcaagc       240
     cgcacgcacg gtttcttctc cgtgatgctc catgttggcg atggaaatgg ggtgccccca       300
     cccgtcttga aacacggacc aaggagtcaa acagacgcgc aagggaggag atatggttgc       360
     cagtacttct ctcgtactga aagggagatg caaaatgcat ctgtggtgtg cacacgtcaa       420
     atccgtttga tttgcccaac accgaccggc cctccgtggg ttgcgttgga gtgtgcctgt       480
     ttggacccga aaggtggtga actatgcctg aacaaggtga agcccgggga aacccaggtg       540
     gaggcctgta gcgatgctga cgtgcaaatc gctcgtatga tttgggtatc ggagcgaaag       600
     actcatcgaa ccacctagta gctggttcac atcgaagttt ccctcaggat agctggtgct       660
     agtagaagta ttgtgcggta aagcaaatga ttagaggcat tggtgttctt agaatatcga       720
     cctattctca aactttaaat gtgcaaacaa accgtgcctt agccaactgc aaggccggaa       780
     agaaaagaat tagaggcacc aagtgggcct tcttcggtaa gcggagcagg cgatgcggaa       840
     tgaaccgctt agggatatgt ggcgtcaaaa cttatgggct cattctcgat acgtgaaaag       900
     ggtgttggtg gatatggaca gttggacggt ggccatggaa gtcggcatcc gctaaggagt       960
     gtgtaacaac tcaccaaccg aatccaccgg                                        990
//
ID   tRNA-Pro-CCA repbase;    DNA;    VRT; 75 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Pro-CCA.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-75
RA   Smit A.F.;
RT   "tRNA-Pro-CCA - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 75 BP; 11 A; 20 C; 26 G; 18 T; 0 other;
     ggctcgttgg tctaggggta tgattctcgc tttgggtgcg agaggtcccg ggttcaaatc        60
     ccggacgagc cccca                                                         75
//
ID   tRNA-Leu-TTA repbase;    DNA;    VRT; 86 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Leu-TTA.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-86
RA   Smit A.F.;
RT   "tRNA-Leu-TTA - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 86 BP; 17 A; 22 C; 28 G; 19 T; 0 other;
     accgggatgg ccgagtggtt aaggcgttgg acttaagatc caatggactg gtgtccgcgt        60
     gggttcgaac cccactcctg gtacca                                             86
//
ID   tRNA-Leu-CTG repbase;    DNA;    VRT; 86 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Leu-CTG.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-86
RA   Smit A.F.;
RT   "tRNA-Leu-CTG - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 86 BP; 17 A; 26 C; 25 G; 18 T; 0 other;
     gtcaggatgg ccgagcagtc taaggcgctg cgttcaaatc gcaccctccg ctggaggcgt        60
     gggttcgaat cccacttttg acacca                                             86
//
ID   LSU-rRNA_Ath repbase;    DNA;    PLN; 3375 BP.
XX
AC   .
XX
DE   from Viridiplantae.
XX
KW   rRNA; LSU-rRNA_Ath.
XX
OS   Viridiplantae
OC   Eukaryota.
XX
RN   [1]
RP   1-3375
RA   Smit A.F.;
RT   "LSU-rRNA_Ath - from Viridiplantae.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   AT3RRNA_848_4222.
XX
SQ   Sequence 3375 BP; 800 A; 823 C; 1058 G; 694 T; 0 other;
     gcgaccccag gtcaggcggg attacccgct gagtttaagc atatcaataa gcggaggaaa        60
     agaaactaac aaggattccc ttagtaacgg cgagcgaacc gggaagagcc cagcttgaaa       120
     atcggacgtc ttcggcgttc gaattgtagt ctggagaagc gtcctcagcg acggaccggg       180
     cctaagttcc ctggaaaggg gcgccagaga gggtgagagc ccgtcgtgcc cggaccctgt       240
     cgcaccacga ggcgctgtct acgagtcggg ttgtttggga atgcagcccc aatcgggcgg       300
     taaattccgt ccaaggctaa atacgggcga gagaccgata gcgaacaagt accgcgaggt       360
     aaagatgaaa aggactttga aaagagagtc aaagagtgct tgaaattgtc gggagggaag       420
     cggatggggg ccggcgatgc gtcctggtcg gatgcggaac ggagcaatcc ggtccgccga       480
     tcgattcggg gcgtggaccg acgcggatta cggtggcggc ctaagcccgg gcttttgata       540
     cgcttgtgga gacgtcgctg ccgtgatcgt ggtctgcagc acgcgcctaa cggcgtgcct       600
     cggcatcagc gtgctccggg cgtcggcctg tgggctcccc attcgacccg tcttgaaaca       660
     cggaccaagg agtctgacat gtgtgcgagt caacgggtga gtaaacccgt aaggcgcaag       720
     gaagctgatt ggcgggatcc tcgcgggtgc accgccgacc gaccttgatc ttctgagaag       780
     ggttcgagtg tgagcatgcc tgtcgggacc cgaaagatgg tgaactatgc ctgagcgggg       840
     taaagccaga ggaaactctg gtggaagccc gcagcgatac tgacgtgcaa atcgttcgtc       900
     tgacttgggt ataggggcga aagactaatc gaaccatcta gtagctggtt ccctccgaag       960
     tttccctcag gatagctgga gctcggacgc gagttctatc gggtaaagcc aatgattaga      1020
     ggcattgggg gcgcaacgcc tcgacctatt ctcaaacttt aaataggtag gacgtgtcgg      1080
     ctgctttgtt gagccgtcac acggaatcga gagctccaag tgggccattt ttggtaagca      1140
     gaactggcga tgcgggatga accggaagcc gggttacggt gcccaactgc gcgctaacct      1200
     agaacccaca aagggtgttg gtcgattaag acagcaggac ggtggtcatg gaagtcgaaa      1260
     tccgctaagg agtgtgtaac aactcacctg ccgaatcaac tagccccgaa aatggatggc      1320
     gcttaagcgc gacctatacc cggccgtcgg ggcaagagcc aggcctcgat gagtaggagg      1380
     gcgcggcggt cgctgcaaaa cctagggcgc gaggcgcgga gcggccgtcg gtgcagatct      1440
     tggtggtagt agcaaatatt caaatgagaa ctttgaaggc cgaagagggg aaaggttcca      1500
     tgtgaacggc acttgcacat gggttagtcg atcctaagag tcgggggaaa cccgtctgat      1560
     agcgcttaag cgaacttcga aaggggatcc ggttaaaatt ccggaaccgg gacgtggcgg      1620
     ttgacggcaa cgttagggag tccggagacg tcggcggggg cctcgggaag agttatcttt      1680
     tctgtttaac agcctgccca ccctggaaac ggctcagccg gaggtagggt ccagcggctg      1740
     gaagagcacc gcacgtcgcg tggtgtccgg tgcgcccccg ggcgcccttg aaaatccgga      1800
     ggaccgagtg ccgctcacgc ccggtcgtac tcataaccgc atcaggtctc caaggtgaac      1860
     agcctctggt cgatggaaca atgtaggcaa gggaagtcgg caaaatggat ccgtaacttc      1920
     gggaaaagga ttggctctga gggctgggct cgggggtccc agttccgaac ccgtcggctg      1980
     tcagcggact gctcgagctg cttccgcggc gagagcgggt cgccggctgc cggccggggg      2040
     acgactggga acggctctct cgggagcttt ccccgggcgt cgaacagtca gctcagaact      2100
     ggtacggaca aggggaatcc gactgtttaa ttaaaacaaa gcattgcgat ggtccctgcg      2160
     gatgctaacg caatgtgatt tctgcccagt gctctgaatg tcaaagtgaa gaaattcaac      2220
     caagcgcggg taaacggcgg gagtaactat gactctctta aggtagccaa atgcctcgtc      2280
     atctaattag tgacgcgcat gaatggatta acgagattcc cactgtccct gtctactatc      2340
     cagcgaaacc acagccaagg gaacgggctt ggcagaatca gcggggaaag aagaccctgt      2400
     tgagcttgac tctagtccga ctttgtgaaa tgacttgaga ggtgtaggat aagtgggagc      2460
     ttcggcgcaa gtgaaatacc actactttta acgttatttt acttactccg tgaatcggag      2520
     gccggggtac aacccctgtt tttggtccca aggctcgctt cggcgggtcg atccgggcgg      2580
     aggacattgt caggtgggga gtttggctgg ggcggcacat ctgttaaaag ataacgcagg      2640
     tgtcctaaga tgagctcaac gagaacagaa atctcgtgtg gaacaaaagg gtaaaagctc      2700
     gtttgattct gattttcagt acgaatacga accgtgaaag cgtggcctat cgatccttta      2760
     gacttcggaa tttgaagcta gaggtgtcag aaaagttacc acagggataa ctggcttgtg      2820
     gcagccaagc gttcatagcg acgttgcttt ttgatccttc gatgtcggct cttcctatca      2880
     ttgtgaagca gaattcacca agtgttggat tgttcaccca ccaataggga acgtgagctg      2940
     ggtttagacc gtcgtgagac aggttagttt taccctactg atgcccgcgt cgcgatagta      3000
     attcaaccta gtacgagagg aaccgttgat tcgcacaatt ggtcatcgcg cttggttgaa      3060
     aagccagtgg cgcgaagcta ccgtgcgctg gattatgact gaacgcctct aagtcagaat      3120
     ccgggctaga agcgacgcat gcgcccgccg cccgattgcc gaccctcagt aggagcttag      3180
     gctccaaagg cacgtgtcgt tggctaagtc cgttcggcgg aacggtcgtt cggaccgcct      3240
     tgaattataa ttaccaccga gcggcgggta gaatcctttg cagacgactt aaatacgcga      3300
     cggggtattg taagtggcag agtggccttg ctgccacgat ccactgagat tcagcccttt      3360
     gtcgctaaga ttcga                                                       3375
//
ID   LSU-rRNA_Cel repbase;    DNA;    INV; 3509 BP.
XX
AC   .
XX
DE   from Metazoa.
XX
KW   rRNA; LSU-rRNA_Cel.
XX
OS   Metazoa
OC   Eukaryota.
XX
RN   [1]
RP   1-3509
RA   Smit A.F.;
RT   "LSU-rRNA_Cel - from Metazoa.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|25167359|ref|NR_000055.1| Caenorhabditis elegans Ribosomal RNA
CC   (rrn-1), rRNA.
XX
SQ   Sequence 3509 BP; 859 A; 735 C; 983 G; 932 T; 0 other;
     ctcaacctga actcagtcgt gattacccgc tgaacttaag catatcattt agcggaggaa        60
     aagaaactaa aaaggattcc cttagtaacg gcgagtgaaa cgggaagagc ccagcgccga       120
     atcgatcagt ctttggctgc ttcgaaatgt ggcgtatagg tgtaagtttc cagcagtgtc       180
     gtatgtccga agtccttacg attgaggcca taaaccagag agggtgcgag ccccgttctg       240
     gatagcggca ctgttggttc gcttgctcct tggagtcggg ttgcttgaaa gtgcagccta       300
     aagtgggtga taaacttcat ctaaggctaa atatcgactc gattgcgata gcgaacaagt       360
     accgtgaggg aaagttgcaa aggactttga agagagagtt caagagaacg tgaaatcgct       420
     ggagtggaac cggagacagt tgatgttgct tggagacaag cttggtgact ggtcgcttag       480
     ttgtgatcgt tgccgggtgt cgtttcctat gctacgccga cggcgttggc tgctcgttct       540
     agcccgacag tgttgcccat ctcgcaagag aaggtgtctt gctggcggta gtgggttcgt       600
     ggcggctagc gtttagttac gctagtgtgt gtgacgtcgg tgtgaaagtc gacgacgttt       660
     ccgacccgtc ttgaaacacg gattgcggag tgcttgtcta ctgcgagtca aagggtgtta       720
     aaaccttgcg gcgaaatgaa agtaaaggtc agtctcgaat tggccgacgt gggatctgtg       780
     ttcttcggag tgcagcgcac cacggccctg tgcgtgtcac ttgtgactgt gcagaggttg       840
     agcagttggc aaacgacccg aaagatggtg aactatgcct gagcaggatg aagccagagg       900
     aaactctggt ggaagtccgt atcggttctg acgtgcaaat cgatcgatag acttgggtat       960
     aggggcgaaa gactaatcga accatctagt agctggttcc ttccgaagtt tccctcagga      1020
     tagctggatc tcaggcagtt atattcggta aagctaatga ttagaggcct tggggacgta      1080
     atgtcctcaa cctattctca aactttcaat ggatatgaag ttgcagtttc tttagtgaac      1140
     tgtcaacgtg aatgcgaggt ccaagtgggc catttttggt aagcagaact ggcgctgtgg      1200
     gatgaaccaa acgtggagtt aaggtgccta acttctcgct catgagaccc cataaaaggt      1260
     gttggttgat attgacagca ggacggtggc catggaagtc ggtatccgct aaggagtgtg      1320
     taacaactca cctgccgaat caactagccc tgaaaatgga tggcgcttaa gcgagagacc      1380
     tatactccgc cgttgcgaca tgtgcgttgt ctagcgccag gtcgtaacga gtaggaaggt      1440
     cgtggcggtt gcgttgaagg ctatgagcgt aggctcggct ggagcttccg tcagtgcaga      1500
     tcgtaatggt agtagcaaat attcaagttc gatccttgaa gactgaagtg gagaagggtt      1560
     ccacgtgaac agtagttgga tgtgggtcag tcgatcctaa ggtactggcg aacgccttgt      1620
     atcatcggtg gcgaaaagct tgcttttagt ccccgcttgt cgaaagggaa tagggttaat      1680
     attccctaac tgagatgcaa agattgtgtt cttcggagca caagcgcggt aacgcattcg      1740
     aacttggtta gtcgctcaaa gaccgagcta gagttttctt ctctagttaa ggaacggact      1800
     ccctggaatt ggttcagcca gagatgggga cgttgtttcc gaaaagcacc gcggtttctg      1860
     tggtgtctcg tgctctttga acggccctta aaacaccaag ggaggctatt aatttgcact      1920
     caatcgtacc gatatccgca ttaggtctcc aaggtgaaca gcctctagtc gatagaataa      1980
     tgtaggtaag ggaagtcggc aaactagatc cgtaacttcg ggaaaaggat tggctccagt      2040
     ggttggaacg gttggccagt tggttgatgc ttgtccggcg cagttctgtc tgcttgatac      2100
     tttcgggttg atggcggact agtgattgtg cttgcttgcg gacgctttct ggtgtgtgct      2160
     tggacctcgg ttctagtatc ctgatcgctc atctaaacaa ccgtactgga accggtacgg      2220
     actcagggaa tccgactgtc taattaaaac agaggtgaca gatggtcctt gcggacgttg      2280
     actgtcactg atttctgccc agtgctctga atgttaaatc gtagtaattc gagtaagcgc      2340
     gggtaaacgg cgggagtaac tatgactctc ttaaggtagc caaatgcctc gtcatttaat      2400
     tgttgacgcg catgaatgga ttaacgagat tcctactgtc cctaactact ttctagcgaa      2460
     accacagcca agggaacggg cttggcaaaa atagcgggga aagaagaccc tgttgagctt      2520
     gactctagtt tgacattgtg aagagtcatg agaggtgtag cataggtggg agtcttcgga      2580
     cgacagtgaa ataccaccac tttcatcgac tctttactta ttcggttaaa agagaattgg      2640
     cttcacggcc ttttttcgaa gcattaagcg gagccatttt atggcaccgt gactctcctc      2700
     gaagacagtg tcaagcgggg agtttgactg gggcggtaca tctatcaaat cgtaacgtag      2760
     gtgtcctaag gcgagctcag agaggacgga aacctctcgt agagcaaaag ggcaaaagct      2820
     tgcttgatct tgactttcag tacgagtaca gaccgcgaaa gcgtggccta tcgatccttt      2880
     taatcctgat tgtttcaggt aagaggtgtc agaaaagtta ccacagggat aactggcttg      2940
     tggcagccaa gcgtccatag cgacgttgct ttttgatcct tcgatgtcgg ctcttcctat      3000
     cattgcgaag cagaattcgc caagcgttgg attgttcacc cactaatagg gaacgtgagc      3060
     tgggtttaga ccgtcgtgag acaggttagt tttaccctac tgttgacttg ttattgcgaa      3120
     agtaatcctg cttagtacga gaggaacagc gggttcaaac atttggttca taaacttgat      3180
     cgacagatca atggtctgaa gctaccattt gagagattat aactgaacgc ctctaagtta      3240
     gaatctcgcc ttgtcaaggc gaaaatttct tgcttcccgg tgtcgggagg catctctatc      3300
     tcgtggcaac acgagagctt atgccctatg tatggccttg gcgtcgtagt gaattctgcg      3360
     acgcttgcca acgccagatc actctggttc aatgtcgggg cgctaaatca cttgcatacg      3420
     acttggtctc ttggtcaagg tgttgtattc agtagagcag tccttttata ctgcgatctg      3480
     ttgagactat cctttgattg agttttttg                                        3509
//
ID   tRNA-Ile-ATA repbase;    DNA;    VRT; 77 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Ile-ATA.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-77
RA   Smit A.F.;
RT   "tRNA-Ile-ATA - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 77 BP; 15 A; 21 C; 24 G; 17 T; 0 other;
     gctccagtgg cgcaatcggt tagcgcgcgg tacttataat gccgaggttg tgagttcgag        60
     cctcacctgg agcacca                                                       77
//
ID   SSU-rRNA_Sme repbase;    DNA;    INV; 1834 BP.
XX
AC   .
XX
DE   from Cnidaria.
XX
KW   rRNA; SSU-rRNA_Sme.
XX
OS   Cnidaria
OC   Eukaryota; Metazoa.
XX
RN   [1]
RP   1-1834
RA   Smit A.F.;
RT   "SSU-rRNA_Sme - from Cnidaria.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|15429302|gb|AF358101.1| Stomolophus meleagris small subunit
CC   ribosomal RNA gene, partial sequence.
XX
SQ   Sequence 1834 BP; 489 A; 366 C; 482 G; 497 T; 0 other;
     gtcgacaacc tggttgatcc tgccagtagt catatgcttg tctcaaagat taagccatgc        60
     atgtctaagt ataagcactt gtactgtgaa actgcgaatg gctcattaaa tcagttatcg       120
     tttatttgat tgtaccttac tacatggata accgtggtaa ttctagagct aatacatgcg       180
     aaaagtcccg acttctggaa gggatgtatt tattagacta aaagccaata cgtgcgctgc       240
     ttcggtggtg tacgttcatg tggtgattca tgataacttc tcgaatcgca tggccatgcg       300
     ccggcgatgt ttcattcaaa tttctgccct atcaactgtc gatggtaagg tagtggctta       360
     ccatggttac aacgggtgac ggagaattag ggttcgattc cggagaggga gcctgagaaa       420
     cggctaccac atccaaggaa ggcagcaggc gcgcaaatta cccaatcccg acacggggag       480
     gtagtgacaa gaaataacaa tccgtgtcta tattctagac gcgaaattgg aatgagtaca       540
     atttaaatcc tttaacgagg acccattgga gggcaagtct ggtgccagca gccgcggtaa       600
     ttccagctcc aatagcgtat attaaagttg ttgcagttaa aaagctcgta gttggatttc       660
     gggacgggcc agtcggtctg ccgcaaggta tgttactggc tggtctgttc ttcttcgcaa       720
     agactgcgtg tgcccttaat tgagtgtgcg tagaatttgc gacgtttact ttgaaaaaat       780
     tagagtgttc aaagcaggct ataagcttga atacatgagc atggaataat ggaataggac       840
     tttggttcta ttttgttggt ttctggaact gaagtaatga ttaagaggga cagttggggg       900
     cattcgtatt tcgttgtcag aggtgaaatt cttggattta cgaaagacga acaactgcga       960
     aagcatttgc caagaatgtt ttcattaatc aagaacgaaa gttagaggct cgaagacgat      1020
     cagataccgt cctagttcta accataaacg atgccgacta gggatcagcg ggcgttattt      1080
     tatgaccccg ttggcacctt atgggaaacc aaagtttttg ggttccgggg gaagtatggt      1140
     tgcaaagctg aaacttaaag gaattgacgg aagggcacca ccaggagtgg agcctgcggc      1200
     ttaatttgac tcaacacggg aaaactcacc aggtccagac atagtaagga ttgacagatt      1260
     gagagctctt tcttgattct atgggtggtg gtgcatggcc gttcttagtt ggtggagtga      1320
     tttgtctggt taattccgtt aacgaacgag accttatcct gctaaatagt cacacgaatc      1380
     acgcttcgtg cctgacttct tagagggact gttggtgtta accatcgtaa ggaaggcaat      1440
     aacaggtctg tgatgccctt agatgttctg ggccgcacgc gcgctacact gacgatgtca      1500
     acgagtctta accttcgccg aaaggtgtgg gtaatctttt gaaacatcgt cgtgatgggg      1560
     atagatcatt gcaattattg atcttgaacg aggaattcct agtaagcgcg agtcatcagc      1620
     tcgcgttgat tacgtccctg ccctttgtac acaccgcccg tcgctactac cgattgaatg      1680
     gtctagcgag accttcggat tggcaccgtt tcggcccgca agggccgaga tggaagtccg      1740
     agaagttgtt ctagttcgat catttagagg aagtaaaagt cgtaacaagg tttccgtagg      1800
     tgaacctgca gaaggatcaa gcttggatcc cggg                                  1834
//
ID   tRNA-Leu-CTA_ repbase;    DNA;    VRT; 85 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Leu-CTA_.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-85
RA   Smit A.F.;
RT   "tRNA-Leu-CTA_ - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 85 BP; 13 A; 24 C; 29 G; 19 T; 0 other;
     ggtagtgtgg ccgagcggtc taaggcgctg gatttaggct ccagtctctt cgggggcgtg        60
     ggttcgaatc ccaccactgc cacca                                              85
//
ID   LSU-rRNA_Giardia repbase;    DNA;    INV; 2690 BP.
XX
AC   .
XX
DE   from Diplomonadida.
XX
KW   rRNA; LSU-rRNA_Giardia.
XX
OS   Diplomonadida
OC   Eukaryota.
XX
RN   [1]
RP   1-2690
RA   Smit A.F.;
RT   "LSU-rRNA_Giardia - from Diplomonadida.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   GMRRNOP_4598_7287.
XX
SQ   Sequence 2690 BP; 615 A; 727 C; 811 G; 537 T; 0 other;
     tcccccccca ctccgatgaa gatgacgggt ggaacttaag catatcagta cgcccaggag        60
     aagacaccaa ccgggattcc ttgattagcg gcgagcgatc caggagtagt ccgacctcga       120
     agcgatgagc gttgtgagga ctggggggat gtcctaaacc cgaagatggg ttgaaaccca       180
     caccaaggag ggtgccagtc cgtagggatg gacacaaccc caacgacgag tacctctgct       240
     tgagaggtag agggaagagg aggtggtacc cttctaaggc taaataccgc cccgagaccg       300
     atagaggacc aagtagtgcg aacgaaaggt gagaaggatg ccgacccagg cacgtcaaaa       360
     gaccctgaac ccgggaggcg actcccgacc tgtcgatgat cgattggtcg ggcccgtctc       420
     gaaacacgga ccgaggagtt aggaccgatc gcgagtcatg tggcaaaggg aagtcaagac       480
     ttcaaggggc cccttacaag ggcagagcga tcggtcctag acccgaaagg tggtgatcta       540
     cacttgacca gggtgaagcc agacgaaagc ctggtggagg cccatcccgg tgctgacgtg       600
     caaatcgctc ggtcgagttg agtgtagggg cgaaagactc atcgaaccac ctggtagctg       660
     gttacctccg aaatgtctcc caggatagcc gacatcatga acagctgccc taggtaaggc       720
     cacgatcggt gggagtaggg aggtcactcc ttatccaccc ctcgaaccat gaacaagggt       780
     ggagcggggc caacttgtgt gggccccctc aacagtgttg atgtcgagtg ggcctctcct       840
     ggtaagcagg acgggcaaga cgggatgaac cgacagtcgg gggaaggtgt ggaagtgtat       900
     gctcgatcaa acggtgtccg tcgatcgtga cagctggaag gtggccttaa cagtaggaag       960
     cctctaagga gtgtgtaaca acccaccagc cgaatcgagg ggcccggaaa atggaacacg      1020
     ccgaagcata cgatcggaac ccgaccgaga tgtgtctcgg gtaggaggtc gtcatgatcg      1080
     agtcgaagcc atggggtgac acgtggtgga tcgagtcatg attgctgatc tcggtagtag      1140
     tagccattac tccatctgga ggcctgacgt ggagatgggt tccgtatccc tgtcgatcag      1200
     atacgggtga cacgatccta agtccgatgg tgtacgccgt accatggggt catcctcaca      1260
     ggacgatagg gctgaccggt taacatcccg gtggtatgat ggggtcttgg tgacatcctt      1320
     tcacaacggt acatgaacga agcacatggt gggagtcatc ccgtcctacc ccagtccccc      1380
     catggccagt agtacttcag gtcgtgcatg gccatgatgg atcacatgtc cttcggtcat      1440
     ccatgaaacc cgttgtgtcc cccccatcct gatcgtacca caaccgcaac aggactccaa      1500
     ggtgatcagc ctctaggcgg gagagaccat gactcaggga agtcggcaaa ctagctccgt      1560
     aacctcggga gaaggagtgg ctctgatcga tcagaaccgg cacggaccga gggatccgcg      1620
     actgtctact aacaacatag cgtcgtgcca gtcgtcatgg atgagcgtac acgacgtgat      1680
     ttctgcccag tgccatgacc gtcaccatga agaggttcat ccaagccctg gtaaacggcg      1740
     ggagtaacta tgactctctt aaggtagcca aatgcctcgt cgggtaattt ccgacgtgca      1800
     tgaatggatc aacgaggatc ccactgtccc aagtcatgcc tccgtgaacc tacagacccg      1860
     ggaacgggcg ggtgttggtc ggcggggcaa gaagaccctt ttgagcttga ctccaatccg      1920
     atcctggggg atgggatcat cggtgcagca tacaggggag gccgcttcca tgagataccc      1980
     tgacgttgtt caccatccca ctcaccgact tacatcggca cacggtcgga tggggagttt      2040
     ggctggggcg gcgcgcctgc tagatcacac ggcaggcgtc ctatggtaag ctcagtgagg      2100
     tcggaaacct cacgtggagc ataagggcat aagcttactt gactagtacc cctgtccggt      2160
     acttgccgtg aaagcgtggc ctaacgatcc ttcaaccgct ccggtaatcc gagcgtggag      2220
     gtgacagaaa agttaccaca gggataactg gcttgtggcc gccaagcgcc catagcgacg      2280
     tggctttttg atccttcgat gtcggctctt cctaccgtcc gcatgcatcg gtgcggaagc      2340
     gtcggattgt tcacccgtct aaggggatcg tgagctgggt ttagaccgtc gtgagacagg      2400
     ttagttttat cctaccgacc atctccatgc gtccagtacg tcgggtcagt acgagaggaa      2460
     cacccgtcgc gagcctccga tctcccggtt gtttgacttg acagtgccgg tctgtcgcgc      2520
     tcgggggact agcactgaac gcctctaagt gtccatccca cctactcgca tgggttgagg      2580
     ggcttcccct cgattcgccc gggttgacga cccttttctc cgacctactg tacggcgtgg      2640
     agcttcttgc gaccgcctga ggtttggttc gggttggcat tccccccgag                 2690
//
ID   tRNA-Ser-TCA(m) repbase;    DNA;    VRT; 73 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Ser-TCA(m).
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-73
RA   Smit A.F.;
RT   "tRNA-Ser-TCA(m) - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   (mitochondrial).
XX
SQ   Sequence 73 BP; 15 A; 15 C; 22 G; 21 T; 0 other;
     gagaaggtca cagaggttat gggattggct tgaaaccagt ctgtgggggg ttcgattccc        60
     tcctttttca cca                                                           73
//
ID   tRNA-Leu-CTY repbase;    DNA;    VRT; 85 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Leu-CTY.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-85
RA   Smit A.F.;
RT   "tRNA-Leu-CTY - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 85 BP; 13 A; 25 C; 30 G; 17 T; 0 other;
     ggtagcgtgg ccgagcggtc taaggcgctg gattaaggct ccagtctctt cgggggcgtg        60
     ggttcgaatc ccaccgctgc cacca                                              85
//
ID   tRNA-Leu-CTA repbase;    DNA;    VRT; 85 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Leu-CTA.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-85
RA   Smit A.F.;
RT   "tRNA-Leu-CTA - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 85 BP; 14 A; 23 C; 28 G; 20 T; 0 other;
     ggtagcgtgg ccgagtggtc taaggcgctg gatttaggct ccagtcattt cgatggcgtg        60
     ggttcgaatc ccaccgctgc cacca                                              85
//
ID   tRNA-SeC(e)-TGA repbase;    DNA;    VRT; 89 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-SeC(e)-TGA.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-89
RA   Smit A.F.;
RT   "tRNA-SeC(e)-TGA - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 89 BP; 16 A; 25 C; 26 G; 22 T; 0 other;
     gcccggatga tcctcagtgg tctggggtgc aggcttcaaa cctgtagctg tctagcgaca        60
     gagtggttca attccacctt tcgggccca                                          89
//
ID   tRNA-Ser-TCY repbase;    DNA;    VRT; 85 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Ser-TCY.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-85
RA   Smit A.F.;
RT   "tRNA-Ser-TCY - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 85 BP; 17 A; 23 C; 27 G; 18 T; 0 other;
     gtagtcgtgg ccgagtggtt aaggcgatgg actagaaatc cattggggtc tccccgcgca        60
     ggttcgaatc ctgccgacta cgcca                                              85
//
ID   LSU-rRNA_Ddi repbase;    DNA;    INV; 3241 BP.
XX
AC   .
XX
DE   from Mycetozoa.
XX
KW   rRNA; LSU-rRNA_Ddi.
XX
OS   Mycetozoa
OC   Eukaryota.
XX
RN   [1]
RP   1-3241
RA   Smit A.F.;
RT   "LSU-rRNA_Ddi - from Mycetozoa.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   DDRN05_4732_10000 Dictyostelium.
XX
SQ   Sequence 3241 BP; 937 A; 582 C; 821 G; 901 T; 0 other;
     tccgcctcac ctttgtaaga ttacccgctg aacttaagca tatcagtaag cggaggaaaa        60
     gaaaccaact aggattccgt cagtaacggc gagtgaagac ggaatagccc aaggttcaaa       120
     cctggatctc ttcgaggcta ggtgatgtga cctatggact gatggagccc gctgttgtga       180
     ctgctaattc cgtttggaat ttcgagtcgt agaaggtgat aaccctgttc gcagtatcac       240
     aacagttgga ctttgccatt agctccacga gtaggaatgt ctgaaattgc attctgaatg       300
     ggtgataaga ttcatccaag gctaaatata tgttaggaga tcgatagcat acaagtaccg       360
     tgagggaaag gtgaaaagaa ctttgaaaaa aggtttaaaa gtatttgaca ccgtttatgt       420
     ggaagcgttt acttggaccc cgattaatga cgtcggttta gctctaattc ttaggtggcc       480
     aaagtagagt gttacgtgct gatcaaaagg taacggacat ttgattcatt ggttatcgac       540
     gaggaaggta ctctaaatcg gccagttact aacgggtgag atctgatgtt tataaaatgg       600
     gggatgaggc ttatcggctt gctggtggct cgctctcaat aatggatatt gggtttcatc       660
     aagagtgcaa aatggtggca attcactatt agtggttatt aattttgttt gcgtggcttg       720
     gccttgtcta caggttatct tcggatggct tgtagctttg ttgaacgcgt gggcttaatg       780
     ttgtgattct agtagcgtta ccatatcgtt agagtgggtt caataaatgt cccgtcttga       840
     aacacggatc aaggaggccg ttttgtgtgc gagtgtaaga gtaattaaaa ctctgacgcg       900
     tattgaaaga aagaatactc caaaagatcg taactacggt taccttctgt aaggagtgcc       960
     cgaatcatga gaactctgtt tcgaaaggat ttgcggttga gcacctagaa tgggacccga      1020
     aaggttgtga actatgcctg aggaaggcga agtcagggga aactctgatg gaaacttgtc      1080
     gcaatgctga cgtgcaaatc gcttgtctaa cttgggtata ggggcgaaag actaatcgaa      1140
     caacctagta gctggttcct tccgaagttt ccctcaggat agctggagca gtattctagt      1200
     tccatcttgt aaagacaatg attagcagtt tcgggggcgt aatgctctca gctgattctc      1260
     aaactctgaa cgggtgggta tcattttaat tcacttaatt ggattttaaa attaaattgc      1320
     acatgtgcaa tgaaaaatag gagctcttag tgggccattt ttggtaagca gaactggcga      1380
     tgtgggttga accaaatatt gggataagac gtctaacatt cactaataga taccacaaaa      1440
     ggtgttagtt cattaagaca gcaggacggt ggccatggaa gtcggtatcc gctaaggagt      1500
     gtgtaacaac tcacctgcca aatggactag ccctgaaaat ggatgacgct agcagtggat      1560
     ggtcgatgcc caatcgttaa aagaagtgat aatactttta acgtgtagga aggcgtgaag      1620
     gtaacgtaga agcttgaatg tgaattcgag tggagttgtc tttagtgcag atcttgatgg      1680
     tagtagcaaa tattcaaaag aatttacttt gaaggccgaa gtgggaaagg gttccataac      1740
     aatggaattc acttatgggt gagtcgatcc taaggtttgg gttaactctc tctaataagg      1800
     ttactaggtc attggatcga aagtgaaggt ggctttaaca ctagtgactt tataggccga      1860
     aagggaagcg ggttaaaatt cctgcaccat cgaatgggat attagggtaa ccgatcgtaa      1920
     tccgggacat caattggcgg tcgaggaaga gttatctttt ctcgttaaca ttgtcttggg      1980
     gtcctccgaa tcgggtcaac tggagacgag gattcatcgc acaatggaag agcacagtcc      2040
     tttggattgg gtctcgcatc cgctaaatgg tccttgaaaa ccggattatg gtatttaatc      2100
     ctatttggtg ttcgtaccaa taaccacatc aagtctccaa agtaaataac ctctagtcaa      2160
     atatattaat ataaataaag ggaatcaaca aaaccagtct ataacttcag ggtaaaggtt      2220
     agctctaaaa ggctggtgga agtggacata ttggagtttg ctatttgttt tttactttta      2280
     ggatgggcaa ctgttttgaa ggtttaagat gggtggtaat tctttccaat gtgagggctt      2340
     gctcgttctg ctttacgatt aacagctaat ttagaactgt gacgatcacc gggaatccaa      2400
     ctgtttaatt aaaacaaagc attgcgataa gcttaaaagc ttttgacgca atgtgatttc      2460
     tgcccagtgc tctgaatgtc aaagtgaaga gattcaacct agcacgggta aacggcggga      2520
     gtaactatga ctctcttaag gtagccaaat gcctcgtcat ctaattagtg acgcgcatga      2580
     atggatcaat gagattccca ctgtccctaa ctactataca gcgaaaccac tgcaagggga      2640
     acgggccttg caaaaacagc ggggaaagaa gaccctgttg agcttgactc tagtctgata      2700
     ttgcatagtg acctaaaagg tgtagaatag gtgggagggg caacccgacg gtgaaatacc      2760
     accccttttg gcgttacttt gctaacttgg aataacagta cctcataatt cattttatga      2820
     tggttttggt gaataagcgg atcaaccacg ggtgaaatct gtgcaaattg ggcaactgat      2880
     ttgtatagca aagtagtccc tcaggtcccg tattatgtcg accaagaaca gtttcaggtg      2940
     gggagtttgg ctggggcggc acatttgtta aaagataacg caagtgtcca aaggcaggct      3000
     cagtgagaac agaaatctca cgtagagtaa aagggcaaaa gcctgcttga ttctgatttt      3060
     cagtaactaa tcggaactgg gaaaccaagg cctatcgatc ctttatgtgc ttaaatctta      3120
     agcctagagg tgtcagaaaa gttaccacag ggataactgg cttgtggcag ccaagcgctc      3180
     atagcgacgc tgctttttga tccttcgatg tcggctcttc ttatcattgt gaagcagaat      3240
     t                                                                      3241
//
ID   LSU-rRNA_Hca repbase;    DNA;    PLN; 3655 BP.
XX
AC   .
XX
DE   from stramenopiles.
XX
KW   rRNA; LSU-rRNA_Hca.
XX
OS   stramenopiles
OC   Eukaryota.
XX
RN   [1]
RP   1-3655
RA   Smit A.F.;
RT   "LSU-rRNA_Hca - from stramenopiles.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   gi|2440064|emb|X80345.1|HC28SRIB Hyphochytrium catenoides gene
CC   for 28S ribosomal RNA.
XX
SQ   Sequence 3655 BP; 932 A; 784 C; 1029 G; 910 T; 0 other;
     cctttcccgc tctctttcct ctttggacct catatcaggc aagaggaccc gctgaattta        60
     agcatataac taagcggagg aaaagaaact aaccaggatt cccctagtaa cggcgagtga       120
     agcgggaaaa gctcaacttg aaaatccgtg tagccccgct gcactgaatt gtagtctatc       180
     gaagctgttg tcagtgaccc tcccgggaga agtctcttgg aacagggcat catagagggt       240
     gagaatcccg tctgtgcccg ggacgtggcc acgtacgaca cgctttcaac gagtcgagtt       300
     gcttgggact gcagctcaaa atgggtggta aattccatct aaggctaaat actggcgaga       360
     gaccgatagc gaacaagtac cgtgagggaa agatgcaaag aactttgaaa agagagttaa       420
     aaagtacttg aaattgctga aagggaagcg aatcaaacca gtgttgatgc gccgtcatct       480
     ttcagtgatg tccttgcttg gggttgcgtg tcggagaggg ttcacctccc tccgctgctt       540
     cttgttttgt aaggtcatcg ctgcgctgtg acggcgcgta gctcagcatc agttcatatt       600
     ccgcgagata tcgtcatcag ggaggtagag tatggtcttg tactatactt gttatatcct       660
     gttgtcggcg tcgtggatag gactgaggta tatacatcac agtgtacgcc tttacggctg       720
     ggtgcgtgtt gctctgttcc aggtactcga ttggactgct cgtcagtgct gtttggtatt       780
     cctgtggata ctgtgatacg ttgcccatgt acactcggga tgctgaggaa atggtttgat       840
     ccggcccgtc ttgaaacacg gaccaaggag tctaacatct atgcgagtat tcgggtggca       900
     aacccttgtg cgcaatgaaa gtgaaggttg atgtaggtca actgaggtag gacgggtggt       960
     ctaacttgtt aggctgcccc gcactatcga ccggccatga tcctctggaa aaaggtctga      1020
     gtgtgagcat atatgttggg acccgaaaga tggtgaacta tgcctgaata gggtgaagcc      1080
     aggggaaact ctggtggagg ctcgtagcga ttctgacgtg caaatcgatc gtcaaatttg      1140
     ggtatagggg cgaaagacta atcgaaccat ctagtagctg gttccctccg aaatttccct      1200
     caggatagca gtaactcggt caacacagtt ttatcaggta aagcgaatga ttagaggact      1260
     cggggaagaa acttccttga cctattctca aactttaaat gggtaagagc acggggttac      1320
     ttaattgaac cctgctgtag aatgtgagtt gctagtgggc cattccgggt aagctggact      1380
     ggcgatgcgg gatgatccga acgtcaagtt aaagtgccaa agtgttcgct cacctagatc      1440
     ccataaaagg tgttggttca tttagacagc aggacggtgg ccatggaagt cggaacccgc      1500
     taaggagtgt gtaacaactc acctgccgaa tgaactagcc ctgaaaatgg atggcgctga      1560
     agcgggccac ttatacttga ccactagggc aagtgccatg ccttagtgag taggagggcg      1620
     tgggggtctg ttgtgcagcc ttgggcgtga gcctgggtga aacggcctct agtgcagatc      1680
     ttggtggtag tagcaaatat tcaaatgaga actttgaaga ctgaagtgga gaaaggttcc      1740
     atgtgaacag caattggaca tgggtgagcc gatcctaaga gataggagaa ttccgtttga      1800
     aagtcgggct ttcctcggag agccccgcct atcgaaaggg aatcaggtta atattcctga      1860
     gccgggacgt ggatactgta tggtaacata actgaactcg gagacgccag cggcagcctc      1920
     gggaagagtt ctcttttctt tttaacaggt tccttttttc catccctgga atcggattac      1980
     ccggcgatag ggtggaagga ctggcaaagc accataatct ctgtggtgtc cgatgcgctg      2040
     ccgacggccc ttgaaaatcc gagggagaga cttattcgca cccccggtcg tactcataac      2100
     cgcatcaggt ctccaaggtg agcagcctct agttgataga acaatgtaga taagggaagt      2160
     cggcaaaata gatccgtaac ttcgggaaaa ggattggctc tgagggttgg gcctaggggt      2220
     ctcgaggtca agattgatgc tgcctacggc ggactgcgca gctctcacgg gccgtgcgga      2280
     ccgctgtcgg tgcggcgctt tcgcgacttc gaggacggtg ttggctttag tcttcttcgg      2340
     gggacgggct ttcacttttt ccctagtgcg tggaacaacc agctcagaac tggagcggac      2400
     aaggggaatc cgactgttta attaaaacaa agcattgcga tggccggaga cggtgttgac      2460
     gcaatgtgat ttctgcccag tgctctgaat gtcaaagtga aggaattcaa ccaagcgcgg      2520
     gtaaacggcg ggagtaacta tgactctctt aaggtagcca aatgcctcgt catctaatta      2580
     gtgacgcgca tgaatggatt aatgagattc ccactgtccc tatctactat ctagcgaacc      2640
     cacagccaag ggaacgggct tggaaaaatc agcggggaaa gaagaccctg ttgagcttga      2700
     ctctagtccg acgttgtgaa atgacttatg aggtgtagaa taagtgggag gcttcggccg      2760
     ccggtgaaat accactactc gtaatgttgt tttacttatt ccgtaaagta gagtccggtc      2820
     accttcacgg gtgcccggtt cttgcgttgc aagctccatt gcctccttgt ggggtagggg      2880
     tgatctacgc ggaagacaac gtcaggtggg gagtttggct ggggcggcac atctgttaaa      2940
     cgataacaca ggtgtcctaa ggtgagctca atgagaacag aaatctcatg tagaacaaaa      3000
     gggtaaaagc tcacttgatt ttgattttca gtatgaatac aaaccgtgaa agcgtggcct      3060
     atcgatcctt tagtctttta gaattttaag ctagaggtgt cagaaaagtt accacaggga      3120
     taactggctt gtggcagcca agcgttcata gcgacgttgc tttttgattc ttcgatgtcg      3180
     gctcttccta tcattgcgaa gcagaattcg ccaagtgttg gattgttcac ccaccaatag      3240
     ggaacgtgag ctgggtttag accgtcgtga gacaggttag ttttacccta ctgatgaggt      3300
     cgttgtcgcg acagtaatcc aacttagtac gagaggaacc gttggttcag ataattggta      3360
     aatgcggttg cctgaaaagg cagtgccgcg aagctaccat ctgtaggatt atgactgaac      3420
     gcctctaagt cagaatccat gctggaaagc gacgatattc acctttcctg atgtaacgcg      3480
     agtagcgata ggccttcggg tccaacatca taaaattgcg gcgcccacgc ctgtcaacaa      3540
     atggcgggtg tgtgtacgct gaaacacaat ttcaaatatt gggaaagata aatcctttgt      3600
     agacgactta actagggaac ggggtattgt aagcatgaga gcaatccttg cattg           3655
//
ID   LSU-rRNA_Dme repbase;    DNA;    INV; 3900 BP.
XX
AC   .
XX
DE   from Metazoa.
XX
KW   rRNA; LSU-rRNA_Dme.
XX
OS   Metazoa
OC   Eukaryota.
XX
RN   [1]
RP   1-3900
RA   Smit A.F.;
RT   "LSU-rRNA_Dme - from Metazoa.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
CC   DRORGAB 3288..5075, 5121..7232 Drosophila.
XX
SQ   Sequence 3900 BP; 1212 A; 665 C; 867 G; 1156 T; 0 other;
     ttatatacaa cctcaactca tatgggacta ccccctgaat ttaagcatat taattagggg        60
     aggaaaagaa actaacaagg attttcttag tagcggcgag cgaaaagaaa acagttcagc       120
     actaagtcac tttgtctata tggcaaatgt gagatgcagt gtatggagcg tcaatattct       180
     agtatgagaa attaacgatt taagtccttc ttaaatgagg cccgtataac gttaatgatt       240
     actagatgat gtttccaaag agtcgtgttg cttgatagtg cagcactaag tgggtggtaa       300
     actccatcta aaactaaata taaccatgag accgatagta aacaagtacc gtgagggaaa       360
     gttgaaaaga actctgaata gagagttaaa cagtacgtga aactgcttag aggttaagcc       420
     cgatgaacct gaatatccgt tatggaaaat tcatcattaa aattgtaata tttaaataat       480
     attatgagaa tagtgtgcat tttttccata taaggacatt gtaatctatt agcatatacc       540
     aaatttatca taaaatataa cttatagttt attccaatta aattgcttgc attttaacac       600
     agaataaatg ttattaattt gataaagtgc tgatagattt atatgattac agtgcgttaa       660
     tttttcggaa ttatataatg gcataattat cattgatttt tgtgtttatt atatgcactt       720
     gtatgattaa caatgcgaaa gattcaggat accttcggga cccgtcttga aacacggacc       780
     aaggagtcta acatatgtgc aagttattgg gatataaacc taatagcgta attaacttga       840
     ctaataatgg gattagtttt ttagctattt atagctaatt aacacaatcc cggggcgttc       900
     tatatagtta tgtataatgt atatttatat tatttatgcc tctaactgga acgtaccttg       960
     agcatatatg ctgtgacccg aaagatggtg aactatactt gatcaggttg aagtcagggg      1020
     aaaccctgat ggaagaccga aacagttctg acgtgcaaat cgattgtcag aattgagtat      1080
     aggggcgaaa gaccaatcga accatctagt agctggttcc ttccgaagtt tccctcagga      1140
     tagctggtgc attttaatat tatataaaat aatcttatct ggtaaagcga atgattagag      1200
     gccttagggt cgaaacgatc ttaacctatt ctcaaacttt aaatgggtaa gaaccttaac      1260
     tttcttgata tgaagatcaa ggttatgata taaatgtccc agtgggccac ttttggtaag      1320
     cagaactggc gctgtgggat gaaccaaacg taatgttacg tgcccaaatt aacaactcat      1380
     gcagatacca tgaaaggcgt tggttgctta aaacagcagg acggtgatca tggaagtcga      1440
     aatccgctaa ggagtgtgta acaactcacc tgccgaagca actagccctt aaaatggatg      1500
     gcgcttaagt tgtataccta tacattaccg ctaaagtaga tgatttatat tacttgtgat      1560
     ataaattttg aaactttagt gagtaggaag gtacaatggt atgcgtagaa gtgtttggcg      1620
     taagcctgca tggagctgcc attggtacag atcttggtgg atagtagcaa ataatcgaat      1680
     gagagccttg gaggactgaa gtggagaagg gtttcgtgtg aacagtggtt gatcacgagt      1740
     tagtcggtcc taagttcaag gcgaaagcga aaattttcaa gtaaaacata attttgaacg      1800
     aaagggaata cggttccaat tccgtaacct gttgagtatc cgtttgttat taaatatggg      1860
     cctcgtgctc atcctggcaa caggaacgac cataaagaag ccgtcgagag atatcggaag      1920
     agttttcttt tctgttttat agccgtacta ccatggaagt ctttcgcaga gagatatggt      1980
     agatgggcta gaagagcatg acatatactg ttgtgtcgat attttctcct cggaccttga      2040
     aaatttatgg tggggacacg caaacttctc aacaggccgt accaatatcc gcagctggtc      2100
     tccaaggtga agagtctcta gtcgatagaa taatgtaggt aagggaagtc ggcaaattag      2160
     atccgtaact tcgggataag gattggctct gaagattgag atagtcggcc ttgattggga      2220
     aacaataaca tggtttatgt gctcgttctg ggtaaataga gtttctagca tttatgttag      2280
     ttacttgttc cccggatagt ttagttacgt agccaattgt ggaactttct tgctaaaatt      2340
     tttaagaata ctatttgggt taaaccaatt agttcttatt aattataacg attatcaatt      2400
     aacaatcaat tcagaactgg cacggacttg gggaatccga ctgtctaatt aaaacaaagc      2460
     attgtgatgg ccctagcggg tgttgacaca atgtgatttc tgcccagtgc tctgaatgtc      2520
     aaagtgaaga aattcaagta agcgcgggtc aacggcggga gtaactatga ctctcttaag      2580
     gtagccaaat gcctcgtcat ctaattagtg acgcgcatga atggattaac gagattccta      2640
     ctgtccctat ctactatcta gcgaaaccac agccaaggga acgggcttgg aataattagc      2700
     ggggaaagaa gacccttttg agcttgactc taatctggca gtgtaaggag acataagagg      2760
     tgtagaataa gtgggagata ttagacctcg gtttggtatc gtcaatgaaa taccactact      2820
     cttattgttt ccttacttac ttgattaaat ggaacgtgta tcatttccta gccattatac      2880
     ggatatattt attatatctt atggtattgg gttttgatgc aagcttcttg atcaaagtat      2940
     cacgagtttg ttatataatc gcaaacaaat tctttaataa aacgatgcat ttatgtattt      3000
     ttgatttgaa aatttggtat aactccaatt actcaggtat gatccaattc aaggacattg      3060
     ccaggtaggg agtttgactg gggcggtaca tctctcaaat aataacggag gtgtcccaag      3120
     gccagctcag tgcggacaga aaccacacat agagcaaaag ggcaaatgct gacttgatct      3180
     cggtgttcag tacacacagg gacagcaaaa gctcggccta tcgatccttt tggtttaaag      3240
     agtttttaac aagaggtgtc agaaaagtta ccatagggat aactggcttg tggcggccaa      3300
     gcgttcatag cgacgtcgct ttttgatcct tcgatgtcgg ctcttcctat cattgtgaag      3360
     caaaattcac caagcgttgg attgttcacc catgcaaggg aacgtgagct gggtttagac      3420
     cgtcgtgaga caggttagtt ttaccctact aatgacaaaa cgttgttgcg acagcattcc      3480
     tgcgtagtac gagaggaacc cgcaggtacg gaccaatggc acaatacttg ttcgagcgaa      3540
     cagtggtatg acgctacgtc cgttggatta tgcctgaacg cctctaaggt cgtatccgtg      3600
     ctggactgca atgataaata aggggcaatt tgcattgtat ggcttctaaa ccatttaaag      3660
     tttataattt actttataaa cgacaatgga tgtgatgcca atgtaatttg taacatagta      3720
     aattgggagg atcttcgatc acctgatgcc gcgctagtta catataaaag cattatttaa      3780
     tacaatgaca aagcctagaa tcaattgtaa acgacttttg taacaggcaa ggtgttgtaa      3840
     gtggttgagc agctgccata ctgcgatcca ctgaagctta tcctttgctt gatgattcga      3900
//
ID   tRNA-Ser-AGY repbase;    DNA;    VRT; 85 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Ser-AGY.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-85
RA   Smit A.F.;
RT   "tRNA-Ser-AGY - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 85 BP; 16 A; 23 C; 26 G; 20 T; 0 other;
     gacgaggtgg ccgagtggtt aaggcgatgg actgctaatc cattgtgctc tgcacacgtg        60
     ggttcgaatc ccatcctcgt cgcca                                              85
//
ID   tRNA-His-CAY repbase;    DNA;    VRT; 75 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-His-CAY.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-75
RA   Smit A.F.;
RT   "tRNA-His-CAY - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 75 BP; 19 A; 17 C; 19 G; 20 T; 0 other;
     gcagtgactg tatagtggtt agcactctgt gttgtggcca cagcaaccat ggttcaaatc        60
     tgagtcatga cacca                                                         75
//
ID   U8          repbase;    DNA;    VRT; 136 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   snRNA; U8.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-136
RA   Smit A.F.;
RT   "U8 - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 136 BP; 33 A; 30 C; 32 G; 41 T; 0 other;
     atcgtcaggt gggataatcc ttacctgttc ctcctccgga gggcagatta gaacatgatg        60
     attggagatg catgaaacgt gattaacgtc tctgcgtaat caggtcttgc aacatcctga       120
     ttgctcctat ctgatt                                                       136
//
ID   tRNASerTCT_CB repbase;    DNA;    INV; 92 BP.
XX
AC   .
XX
DE   from Caenorhabditis briggsae.
XX
KW   tRNA; tRNASerTCT_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-92
RA   Smit A.F.;
RT   "tRNASerTCT_CB - from Caenorhabditis briggsae.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 92 BP; 20 A; 18 C; 25 G; 29 T; 0 other;
     tgcagtcatg tccgagtggt taaggagatt gactagaaat caattgggct ctgcccgcgt        60
     aggttcgaat cctgctgact gcgttaattt tt                                      92
//
ID   tRNA-Gln-CAA_ repbase;    DNA;    VRT; 75 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Gln-CAA_.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-75
RA   Smit A.F.;
RT   "tRNA-Gln-CAA_ - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 75 BP; 21 A; 11 C; 20 G; 23 T; 0 other;
     taggacatgg tgtaataggt agcacggaga attttgaatt ctcaggggta ggttcaattc        60
     ctatagttct agcca                                                         75
//
ID   tRNA-Ser-TCA repbase;    DNA;    VRT; 85 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Ser-TCA.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-85
RA   Smit A.F.;
RT   "tRNA-Ser-TCA - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 85 BP; 15 A; 25 C; 28 G; 17 T; 0 other;
     gcagcgatgg ccgagtggtt aaggcgttgg acttgaaatc caatggggtc tccccgcgca        60
     ggttcgaacc ctgctcgctg cgcca                                              85
//
ID   tRNA-Pro-CCG repbase;    DNA;    VRT; 75 BP.
XX
AC   .
XX
DE   from Vertebrata.
XX
KW   tRNA; tRNA-Pro-CCG.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-75
RA   Smit A.F.;
RT   "tRNA-Pro-CCG - from Vertebrata.";
RL   Direct Submission to Repbase Update (05-FEB-2007).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 75 BP; 11 A; 21 C; 26 G; 17 T; 0 other;
     ggctcgttgg tctaggggta tgattctcgc ttcgggtgcg agaggtcccg ggttcaaatc        60
     ccggacgagc cccca                                                         75
//
