ID   CELE45      repbase;    DNA;    INV; 398 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans Cele45 repeat - a consensus.
XX
KW   MITE; CELE45.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-398
RA   Belknap R.W., Surzycki A.S.;
RT   "CELE45.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RP   1-398
RA   Jurka J.;
RT   "CELE45.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 398 BP; 106 A; 99 C; 84 G; 109 T; 0 other;
     actacttatt ttattgaatt tattaaatgt ttttcattta aaaaaaatta aagattaaag        60
     gacgatccgt tcttcaagtg ctatgcactg cggatctggg gttcaggtac actgcctggt       120
     ggtgatcacc tctgggctgt aatttaagcc acgtcctagc cggggactgt ggccgataat       180
     ccagtcgtgg attgctccac ttcccaatag aggctgggtg aacctagggg ggtgagacca       240
     gacttgaact cgtgacctcc agactgctag cagccaccac taccgactga gctatctgcc       300
     cccccccccc cccttgaaaa aagagacatt attcgtcatt ttttgtcagc ttatcaatca       360
     ctacgagtga ataaacaccg aaattgattt acagccca                               398
//
ID   BLOODI      repbase;    DNA;    INV; 6613 BP.
XX
AC   .
XX
DT   19-NOV-1998 (Rel. 3.2, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Drosophila LTR retrotransposon BLOOD, an internal portion- a
DE   consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; LTRBLD_DM; BLOODI;
KW   protease; BLOOD.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-681
RA   Wilanowski M.T., Gibson B.J., Symonds E.J.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila
RT   melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 92, 12065-12069 (1995).
XX
RN   [2]
RP   1-6613
RA   Kapitonov V.V., Jurka J.;
RT   "BLOODI.";
RL   Direct Submission to Repbase Update (06-NOV-1998).
XX
CC   [2] (Consensus)
XX
CC   LTR of BLOOD retrotransposon is listed in REPBASE as LTRBLD_DM.
CC   All copies of BLOOD were found in chromosome 2; they have 5 bp
CC   long target site duplications (all targets are different).
CC   Some of the copies are identical, including LTRs. BLOOD is
CC   presumably an active LTR-retrotransposon. BLOOD is related to
CC   MDG1 and DM412 retrotransposons found in Drosophila.
XX
SQ   Sequence 6613 BP; 2616 A; 1224 C; 1155 G; 1618 T; 0 other;
     tggcgaccgt gaggcaggag cctgcgatct gaggactact gaggaaatgc tgctaatatt        60
     gccgatttga tttgggaatt ctaaacagcg acaacaggtg tgagaggcag gccgcccctt       120
     acaccagtgc gggagaccta gagacgggac actgatgaaa aaaaaaagaa acaaaaatac       180
     tgagtgagta gagtgtggta atgggcaaac gcggatgtca ggaaatcaaa aataaaggta       240
     tagcacatat taagtggcta tgatatacaa ataaaacacc gcccccatgg gcaacggcac       300
     agaaattaac tgccgaatta gactttctga aagaaaacct ccagcaaaga aagccgaata       360
     ccacaactca ctcagcaaaa atagaaataa tcaatgaaga aataactgaa aattcaacat       420
     cacccaagcc gaaaagaccc gacgtctgca tgaacgactg ccctcgacca ttgtaagccg       480
     caacagcaat tagcacggca tcctgcgagg gtaggattag gataaaggat aaaggattcc       540
     accggcgcgc cgcacatgac aacagcgaat gtctaccaag cagacgttcg aacaccctgc       600
     tcctgtcgag caaagggatc tgccaagtat caaagaggta atagaggtag atccgtccgc       660
     gggaccaaag cccttgacca tacaagagta caaggcacgg actgcagcga gggagcagcc       720
     acctaaaaag aagaggggtg gccgccggat taagttgctc agcgcccgga ggctcaacat       780
     cgaactactg aagacggcaa ctaatgagga agaccggcag cgctacaaag agcgccttgc       840
     agccatcaat caacaacttc gtggtgcgaa gtaaagcggc gggctgcgtt atacgccata       900
     gcctcaaccg cccaaatatt atattaatgt tgtcgatgcg gtttccgctg caacaaaatt       960
     actaacttat cagggaccca tttcataact aacacattat actcagtcct aaacttaaaa      1020
     taagtaataa tattgtaaaa ttgcaaattg caaccgatgt aaactgagta taatgaattc      1080
     atctatcaag taaaaatatg tttaacaaca gtttagacct attaaaattt cgagctatat      1140
     ttatatctga tcgagataac aataattgac caattctcaa agttaaaatt ctatttgtac      1200
     ttttgatata caaataaaga ctaattttcc ccatatcaaa atgggacata agtcgtggat      1260
     acaaccccac agttaaattc aatgtactta ctatttttga ttttagttat cctatcagcc      1320
     ttttaacctg gccttaaaac tttatcagtt tcacaaaaga tcgttgaaaa gacttacatg      1380
     agtcgagcca atgatttaga caaaatctaa tagaaactac accaaaaagg tacaagtgcg      1440
     attacatcgc taaaaggtac atacatggaa tggctaaact taaccatatc cataaacaat      1500
     attagagatg cttttgataa atcctataaa tgtattaata aaaccgcgct gatcaaaact      1560
     cagacgctta tttttcacat aaaggtattg ataacacaat acaacacatt acaaaaccta      1620
     atagtaacaa acaaaagcaa actcactgaa gaacataaag tccaatgctt caaagttctc      1680
     agttcatttg gtaaaagact acataatacc agcgttagac acagtattat aatagaagtc      1740
     ccaacagaac taaccaaaat agcagaattc gacgaaagcc agttaagaga cttggacgag      1800
     tcgcagccgt tagaagattt agatatcgaa agcgatatcg aatcaataga agaattaaaa      1860
     tttaataccg tacaaccaaa tacaagaaac atggccaacg cattagaagc tcagagagca      1920
     tacgttaaac aggtatctgc cacagtacct gaattcgatg gtaagaaact ccatttaaac      1980
     aggtttgtga cagcacttaa gttgacggat ctaactaaag gagatcaaga aactttagca      2040
     gtagaggtca taaagaccaa aattattggc ccattaaact ataaagtaga acatgcgaca      2100
     acgatacagg caataattac catattgcag gcaaacgtaa aaggcgaatc gcctgacgtt      2160
     ataaaggcca aattaataaa tgcccaacaa agaggcaaga ccgcgtctca gtatgttaca      2220
     gaaatagaca gtatgcgtaa gcagctcgag gcagcttaca tagacggcgg attagacgcc      2280
     gataatgctg acaaattcgc gactaaagag tcgatatcag caatgaccaa aaactgtgcc      2340
     aacgaggcac ttaaaatgat cttaactgca ggtacattta gtacattcaa cgacgcaatg      2400
     gaaaaatacc tacattgcag tacagaaata accggcaatt caaatacagt cttattctat      2460
     aatgggaata atagacgtgg taattataat gcctactatc gtggtagagg cagaaataat      2520
     tataaccata attataacca gaattataac caaggttata ataataacaa cagaggtcgc      2580
     ggaggctacc gcggccacgg taataacaga gacggaggta accgaagggg taaccaaagt      2640
     cagaataata ataacaaccg aaatgtgcgt aacgtacaat cggaaaacag ccagaccccc      2700
     ttaagcgatc aacagtaaaa gtgtttaaag taaacctaaa tctgagtatt ttcattaaga      2760
     caaaaaacca tgaaacaaac acagttctta cattactaat agacacaggt gcagaaattt      2820
     cattgctaaa agccaaagca aaggaatata ataatataaa tttcagtaat atatcaaata      2880
     ttacaggtat tgggcaagga accatacagt ctataggtac agtagatctt gacatacgca      2940
     ttcaggatgt tctagtgcca catgaatttc atgtagtacc tgagaatttt ccgataccat      3000
     gcgatggcat aatcggaata gattttatca agaaatacaa ttgcgtatta gagtttcaaa      3060
     ataacaaaga ctggttcaca ataagaccca ataacttcag tagacagatt agtgtaccaa      3120
     ttacacataa cttagactcc aacacactct tattgccagc tagatgcgaa gtaatcagac      3180
     aagtcaaatt actcactaac gaaaaaacgg tggtagtacc aaatcaggag ctgcaaccag      3240
     gtataatagt agcaagcacc attgccgata gcaaaaacgc attgattcgc attataaata      3300
     caaataataa agacgccata atagatagcg cgaagatcaa atgcgaatca atgaaagact      3360
     atgacatttt tacaacacca gtagaaaagg aaaatagaac tgaagaaatt ttaaaacaat      3420
     taagattccc taaacaattc aataatgaac taactaagtt atgcaccgag tttagcgata      3480
     tttttggtct agaaacagaa ccaatatcgg ctaacaattt ctacaaacaa aaactcagat      3540
     taggggaaaa aacaccggtc tatataaaaa actatcgcat ggcagatagc caaaaaccag      3600
     aaatcgccag acaggtaaaa aaattaatag atgatggaat agttgaacca tcaatgtctg      3660
     aatataatag tccattactt ttggttccaa agaaaccact tccgaattcc acggaaaaaa      3720
     gatggcgatt agcagttgac tatcgtcaaa taaataagaa actattatca gacaaatttc      3780
     cacttccaag aatagaagat attcttgatc aattaggaag agcaaagtat ttttcatgtc      3840
     tcgacctaat gtctggattc caccagatag aactagaaaa aaggtataga gatataacgt      3900
     cattttcaac agccaatggc tcatatcgct tcacgcgatt accatacgga ctgaaagtag      3960
     caccaaactc cttccaacgt atgatgacac ttgcattttc tggtcttgaa ccatcgcaag      4020
     catttctata tatggatgac ttagtagtaa taggttgttc agaaaaacat atgctcaaaa      4080
     atttgactaa cgtattcgag ctatgtagac gacataattt gaaactacat ccagggaaat      4140
     gttctttctt tatgaaagaa gtaacatatt tgggtcacaa atgtaccgat aaaggtatac      4200
     tcccagatga caccaaatat gaagttatag aaaaatatcc tataccaaca gatgccgaca      4260
     gtgctaggcg tttcgtagcc ttctgtaatt attacagacg tttcattaaa aatttttctg      4320
     atcattcacg ccacttaacg aggctttgta aaaagaatgt tcaattcgaa tggacagcag      4380
     aatgcaatga tgcattcgaa taccttaaaa cagaattaat gaaaccaaca ttactacagt      4440
     acccagattt cggtaaagaa ttttgcataa caaccgatgc tagtaaacag gcatgcggag      4500
     cggtacttac acaagatcac aatggtcaac aacttccagt ggcatacgct tcaagaatgt      4560
     tcactcaagg tgaaagtaat aagtccacta cagaacaaga attaacggcc attcattggg      4620
     ccataaatca ttttcgacca tacatatatg gcaagcattt catggtaaaa agcgatcata      4680
     gaccattgtc atacctattc tctatgaaaa atccaagttc aaaactcact cgtatgaggc      4740
     tggatttaga agagtatgac tttactgtag aatatcttaa ggggaaagat aaccatattg      4800
     cggacgcctt gtctcgcata acaataaaag atctgaaaac aatcaacaga gaaatattaa      4860
     aagttaccac cagatcaaaa gctaaacagg aaaattcctg taaggacgaa gcaatagtca      4920
     aaatacaaga ggaaaaagag caaacaatag aaaagcccaa agtctatgaa gttgtcaata      4980
     ataatgacac aaagaaatat gttttaatca aaatagataa acacaagtgt ttattaaaac      5040
     gaggaaaaac aattgtttca cgctttgatg ttgatgactt gtattctaat gaaacatttg      5100
     atctaaatca attctttcaa aggcttattt caaaagccgg aatgcataaa ataacaaaaa      5160
     tgcgaatatc accaagcgaa cagatgttcc aatttgtatc actaaatgaa tttaaaataa      5220
     agggcaaccg agtactcgaa aaagtagaac tagctattct acaaaaggtg ataattatag      5280
     acaaaaatga cgaagctcag attaaagaaa ttttgacaaa attccatgat gatcctatag      5340
     aaggaggcca cactggtatt tcgcgaaccc agtcaaaaat caaaagattt tattattggc      5400
     cccagatgac caagacaatc tcaaagtatg taaagacttg tttgaaatgt caacaagcca      5460
     aaattacaac acatacgaaa actccattaa cattgatgcc aacgccagca acagcatttg      5520
     atactgtttt aattgatacc attggtccac taccgaaatc ggaagacgga aatgagtatg      5580
     cagttacaat catatgcgat ctaaccaagt ttttagtaac tattccaaca ccaaataaaa      5640
     gtgctaaaac agttgcaaag gctatatttg aattatttgt actgaagtac ggtccaatga      5700
     agacgttcat tacagatcaa ggtacggaat acaaaaattc acttatgaat gaattatgca      5760
     aatatatgca tatagaaaat ctaacatcta gcgctcacca tcatcaaact ttaggaacaa      5820
     tagaaagaag ccaccgaact tttaatgaat atatacgttc atacatatcg gttaacaaaa      5880
     gtgattggga catttggtta ccatatttca cttattgctt caatacaaca ccctcaatag      5940
     tccatgacta ttgcccatac gaactagtat ttggcagact acccagacaa ttcaaagatt      6000
     tcagtaagat aaacaaaata gacccaatat acaacttaga cgactactct aaagagctta      6060
     aatgcagact agaattgtcg tacaacagag caagaagaat gttagaaaaa gcaaaagcgg      6120
     atagaaaatt aagatatgat aggaatacaa ataatttcga attaaaaata ggagataaag      6180
     tattacttag aaaagaaaca ggtcataagt tagataaaag atatgaaggt ccttatgacg      6240
     tagtagatat aggaataaat gacaatataa ccattaaaac aggaagtaag aaacaacaaa      6300
     tagtacataa agataggcta aaaaagcaca aatagaatga aaaaaaaaaa gggcaatcaa      6360
     tgccaaacct ttcataataa aacttaaata acggcctgat cagccaaaac aatataacaa      6420
     agacatagat ataatcgaat ttttattaat tcaaaataca tacatatttt ttctttattc      6480
     atttaaaaat tctatatcat aaataatgtt aattcattaa aaataatatt taagtaattt      6540
     ttattttata atggtaatat agttgataga aaataacttc atttctttac gttattttaa      6600
     aaaagagggg agg                                                         6613
//
ID   UBX_DM      repbase;    DNA;    INV; 225 BP.
XX
AC   K01963;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Drosophila repeat, from Ultrabithorax locus (Ubx) of the Bithorax
DE   complex (BX-C).
XX
KW   Repetitive sequence; DMUBX; UBX_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-225
RA   Scott P.M., Weiner A.;
RT   "Structural relationships among genes that control development:
RT   Sequence homology between the Antennapedia, Ultrabithorax, and
RT   fushi tarazu loci of Drosophila.";
RL   Proc. Natl. Acad. Sci. U.S.A 81, 4115-4119 (1984).
XX
DR   GenBank; K01963; Positions       1     225.
XX
SQ   Sequence 225 BP; 64 A; 60 C; 65 G; 36 T; 0 other;
     aatgctttcc cattccgatc tacaggtaca aatggtctgc gaagacgcgg gcgacagaca        60
     tacacccgct accagacgct cgagctggag aaggagttcc acacgaatca ttatctgacc       120
     cgcagacgga gaatcgagat ggcgcacgcg ctatgcctga cggagcggca gatcaagatc       180
     tggttccaga accggcgaat gaagctgaag aaggagatcc aggcg                       225
//
ID   MDG3_DM     repbase;    DNA;    INV; 4986 BP.
XX
AC   X95908;
XX
DT   06-FEB-1997 (Rel. 3, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Internal part of D.melanogaster MDG3 retrotransposon.
XX
KW   LTR; mobile dispersed genetic element; retrotransposon MDG3;
KW   DMMDG3; MDG3_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4986
RA   Avedisov N.S., Il'in V.I.;
RT   "Drosophila retrotransposon mdg3: general structure and
RT   functional domains of a full-scale copy.";
RL   Dokl. Akad. Nauk 344(6), 823-826 (1995).
XX
RN   [2]
RP   1-4986
RA   Dzhumgaliev B.E., Mazo M.A., Baev A.A., Gorelova V.T.,
RA   Arkhipova R.I.;
RT   "Structure of long terminal repeats of transcriptionally active
RT   and inactive copies of the mobile dispersed gene MDG3 in
RT   Drosophila melanogaster.";
RL   Genetika 22(3), 368-377 (1986).
XX
RN   [3]
RP   1-4986
RA   Ilyin V.Y., Arkhipova R.I., Gorelova V.T., Schuppe G.N.;
RT   "Detection of RNA reverse transcription intermediate forms of the
RT   mobile dispersed genes mdg1 and mdg3 in Drosophila cells.";
RL   Mol. Biol 19, 162-172 (1985).
XX
RN   [4]
RP   1-4986
RA   Avedisov S.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (16-FEB-1996)S. Avedisov,
RL   Engelhardt Institute of Molecular Biol., RAS , Department of
RL   Genome Mobility, Vavilov Str., 32, Moscow, 117984, RUSSIA.
XX
DR   GenBank; X95908; Positions     267    5252.
XX
CC   LTRs of DMMDG3 are named LTRMDG3
CC   CDS 29..4513.
XX
SQ   Sequence 4986 BP; 1898 A; 877 C; 947 G; 1264 T; 0 other;
     aatctcagaa gtgggattaa taatccaaaa tggacgataa aatcatcctg aacgactttt        60
     cgctgacaac cctaaaagat tggctacgta ttctgggcca aaatacggag ggcacaaaaa       120
     ccgaattaat cgcgaggctg caagacatcc caacggcagt tcggggcgat tgtccaccgg       180
     agcaccccca gaaaaacgct ccaccaggaa acgacatttt ttcttcactg gattttcaga       240
     attgtgaaat taacaccgat cacgtaagtg tgaatgcgat gaacagaaaa gaatcaaccg       300
     aaactggcag tgagagggag acaaacatgt tcgagctaca gcaactacgc gcagagctag       360
     cagaagcgaa ggcaatgctt aacggaacac gatcgagctt gcagttccaa gaacaacaac       420
     aaccagagca aagcaaggct acagttagtt ccgttatcca gacggcgcag tttacgcagg       480
     ctggcgccac aaaagagaac acaacatttc actcgccgca gcgatccaac gagagagcgg       540
     agagccagcg ttttccagtt gatgctctcg ctctcgccaa agagacgata accgattacg       600
     atgggaaaac ttgcgcgcgt gcctggataa cagtggtcaa aaatatcgca cgcactttca       660
     acatcgatga caaccattta cgcatcttac tcatcactaa acttaaagga aacgcgcaag       720
     tctggttaca tgcgcaccct gctcgattga tcgaaccaat tgacaatttg cttgatcaat       780
     tgtcattgac ttttggcgag caatcatcca aggctgagat ccggcgaaaa ttcgagagtc       840
     gcaagtggaa aaccgaggag aatttctgca gttattacga cgagaagatg gctctctcaa       900
     acgggataaa catcgacgac gacgaactac tggaccagat gatagagggc ataccgctac       960
     aaaatttccg tacccaagca cggattcaat gcttctctac tccatcggag atgctacgcg      1020
     cattttcgaa catccgtttg ccagctcgga gggagccacc tgtacagcca accgactaca      1080
     aagatgccat acgatgcgca aactgtaatt caagaggaca caaagctgac atctgcaaga      1140
     agcccaaacg tgaaccaggt tcgtgctacg cctgtggaca acttggacac ctggtggcac      1200
     aatgtcccac aaggaagagc gtttcatcta ataattatgt aagatggttt aaaattaatt      1260
     tttttgaaaa tgcttataag cccataattt cagaatgcct catagactct ggcagtccta      1320
     tatctatcat taaaaagtca cttattaacg agacaatgaa gttagcccta gttaatactt      1380
     gctattttgg tttaaacaac tgtattctca aaacacatgg acaaaccaca tgttatgttt      1440
     tgaaaggatc aataaaaata tattttcgtt taatcattgt ttgcgaccag tctatgaggt      1500
     ataatgttat tctcggcaga gattttttaa ctgcatgcaa tttaaattta gacccgtaca      1560
     ccttgggaat gattgcgttg agaaaaccca tggaaataaa caaaatatca atgtttactg      1620
     aaaatgatag tcctgagaaa tctttagaaa atgaaattgt tagtccaaaa tcgttagaga      1680
     atgaaattgt tagttcacaa tcgttagaaa atgaaattgt tagccccaaa tcgttagaga      1740
     atgaaattgt tagtccaaaa tcgtttaaaa atgcaactat tagtccgaaa tcgttagaaa      1800
     ataaaatcgt taatcaacag cataaagaaa ctggtccaat atcgttaaga gatgaaatag      1860
     ttaatcaaca aaagaatgtc agtaaatcaa aattatcaga agatgaaatt gttaacactt      1920
     caaaagaaat cgttagtttt aaattgccaa aagataaaaa cgtttacgaa caattaaatc      1980
     acaactttga taaggaagta ctaagaatat gtcatgtaac tgaaagtgag ttagaataca      2040
     aaataggaga aaatgttagc aataggttac aactagaatt cgataggttg tttagaaatt      2100
     tttatataaa tgcaaaaagg ccaaatgaac cgacagttag aagtgaaata caattgtgtt      2160
     tgaaaaaccc gaaaccgttt agctgttctc ctaggaggct ttcatacaca gaaaaagaca      2220
     ggttacaaaa actattagac gaatatttgg aaaacggatt tatacgacca agcgactcgg      2280
     aatatgcatc gcctattgtt ttagtgaaaa agaaaactgg agacttacgt atgtgcgtcg      2340
     actttagaaa acttaataaa atgacaatga aagacaacta tcctctacct cttatagatg      2400
     acttgttaga tagaatgaat gagaaaactg ttttcaccaa actcgatctt aaaaacggtt      2460
     ttttccacgt gcatgttaaa aaagaatcaa taaaatacac ctctttcgtt acaccattag      2520
     gccaatacga gtggctgcga atgccatttg gcctcaaaaa cgccccgtct gtgttccaaa      2580
     gatttgttaa caaaattttt gcggatatga ttagagaaaa caaagtagta gtatatatgg      2640
     acgacattct attggcaacc gaaaatataa acgaacactt agaaacgttg aaagaaattt      2700
     ttaaaagatt agttgaaaat aaacttgaat taagaataga caaatgtgag tttatgcaat      2760
     caagtataaa atatcttggg ttcataataa ataaagacgg cataatgccc aatgacaaag      2820
     gaatcgaggc aataaaaaat ttcccaatac ctaataatgt tcatacagta caaagttttt      2880
     tgggattatg ctcatatttt cgacggttta taaaagattt ttctagacta gctaaaccat      2940
     tgcatgacat tctaaaaaaa gataaaccgt tcaaatttgg tagtgaagaa atgatttgtt      3000
     ttaatatgtt aaaagataaa ttaatacagt caccggtctt agctatatac aaccataaac      3060
     acgaaacaga attgcattgt gatgcaagtt cttctggatt cggtgctgta cttatgcaaa      3120
     agaaggagga ccagaaatgg cacccagttt cattcttttc aaaacggaca acagatattg      3180
     aatcaaaata ccacagtttc gagttagaaa ctttagccat tgtttattcg ttacgtagat      3240
     ttagagttta tcttcattgg aggacattta aaatagtcac cgactgcaac tcattaattt      3300
     tgaccctaag caaaaaagag ctaaacccta ggatagccag gtgggcttta gaattccaag      3360
     gttatgattt tgaaattgtg catagggcag gtagccgcat gcaacatgtt gacgcactga      3420
     gtaggtgtac aaatattatg gtaatacaaa caaacagttt cgaagataat ctagttatat      3480
     gtcaagggaa agatacaaaa ttaaaagaaa tcaggcaatt gttagaaaac acagaaaata      3540
     aattgtatga gatgagaaat ggtatagttt acaaaaagac aaatgaaaat agattgctgt      3600
     tctacgttcc gatagaaatg gaagaacaag tgttatacaa atatcacaac gaacttggac      3660
     acgtaggaag agacaaaatg atagaagcta taatgaaaaa ctattggttt ccaaatttaa      3720
     aacagaagtg tagcacacat atcagcaact gtttaaaatg tatttcattc agtcccaaaa      3780
     caggaaaaac agaaggattt ctacacaaca tacctaaggg aaacaaacct tttgaaataa      3840
     tccatattga ccattatggt ccagtagact tggctagacc gaagaaacat attctagtga      3900
     tagtagatgc attcacaaag tttgtcagac tatacgcaac aaaaactacg aacacaaaag      3960
     aagtcataca atcgttaaat gactacttca gagcatacag taggcctaag tgtatcatat      4020
     cagatagagg agcatgtttc acgtctggcg attttgactc atttttgaaa gaatgcaatg      4080
     ttaaacacat aaaaattgca acaggatcgc cacaagccaa cggtcaagtt gaacgtataa      4140
     accgaagtct tggtccaatg attagcaagt taattgaacc tgatcaaggt ctacactggg      4200
     acttagtctt agaaaaggtc gaatataccc tgaacaatac actacaccgc agcattaaac      4260
     agtatcctag cataatgtta tttgggttac aacaaaaagg acaaattatg gatgagttaa      4320
     aagaaaaaat tgaggaaatt ggagaaacga ttgaagaaag agatttagaa agtattagaa      4380
     ataaaggcga ggcaagtcag aaaatagcac aagcatacaa taaagaatat gttgacaaaa      4440
     aacgaaaacg atcaggagtg ttcacaaaag gcactacgtc atggttaaaa attttgactc      4500
     aacaacaggc atagctaaga agttaattcc aaagcataaa ggaccctatg tcataagcaa      4560
     agttctcaaa aatgatcgct tccttctgga agatgttgat ggatttcaaa tttctcgcaa      4620
     tccttaccgg ggtgtatgga gcatacagaa tataaaacac tggcaaagaa aaattaagag      4680
     tctacaaaat agaaagtata atttgagaaa ctctgtacaa aatagaaagt ataatttgag      4740
     aaactctgta caaaatagaa agtataattt aagaaactct gtacgaaatc gaaagtataa      4800
     tttaagaagc aattgtaaaa caaagaaaac aaacaagaag aaaagaaaac caaaaaaatg      4860
     tttaagaccg ttcaaaagta tctccactaa gaagaataaa ataagaaaca ggacccttag      4920
     ctttaagaaa cgttaattgt tataaaatcc tacgatcggg agatctagtt gtcaggacgg      4980
     ccgagt                                                                 4986
//
ID   DM2         repbase;    DNA;    INV; 4558 BP.
XX
AC   X15066;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   Drosophila retroposon microcopia Dm-2 3'end.
XX
KW   Repetitive element; Long terminal repeat; reverse transcriptase;
KW   Copia element; retroposon; DM2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4558
RA   Lankenau H.D.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (20-JAN-1989)Lankenau D.H.,
RL   Dept Mol Developmental Genetics, University of Nijmegen,
RL   Toernooiveld, NL 6525 Ed Nijmegen, The Netherlands..
XX
RN   [2]
RP   1-4558
RA   Lankenau H.D., Huijser P., Jansen E., Miedema K., Hennig W.;
RT   "DNA sequence comparison of micropia transposable elements from
RT   Drosophila hydei and Drosophila melanogaster.";
RL   Chromosoma 99, 111-117 (1990).
XX
DR   GenBank; X15066; Positions     379    4936.
XX
SQ   Sequence 4558 BP; 1425 A; 876 C; 1010 G; 1247 T; 0 other;
     agcaacctag ttatgatgtt aagctaccca aatttaaccc tgatgctgca tgcgtagagg        60
     cagcaaagtg gtgtccaaca accgatataa ttctaactga gcaccccctt aaaggaagta       120
     aattgatcat ggcactaagt aactgcatgg agggaactgc atctcagtgg ctaacacaaa       180
     tctcgtacca gggtatgact tggcaagagt tccaggaatt atttctgcag cgctttgaaa       240
     ccgaagagac gccggccgct acgtttttaa atttactcaa cagccgcccg actgccgccg       300
     aatgttacgc ggtgtatgcg agtcggctgg tgacgacgct gactacaaag tggcggaata       360
     tggaaataga agaaattgcc gttacaaccg ttcttgcgca tatggcaaac attgacagtc       420
     gtttgcagcg cgtcctcttc acatccaatg tgcgtaccag aagtaagcta caggcggagt       480
     taaaagcgtt tacgttcgac aagaagcgac atgctcgaga tgacaacctt ggacctgacc       540
     acaagaaccg taaggcatcg ccagttgtat gccacttctg ttcaaagccg ggacatcgaa       600
     ttgctgaatg ccgaagtaaa atgcgacaag atagacaggc gaaaccgcag cgtgaaaaat       660
     caaatgttac gtgctatcgg tgcggccaac cgggacattt ctccaaccag tgcccgaaaa       720
     acggaagtgc agccaaacaa gatgtgactc aacagaagac tgttaaccaa tgttgtgtga       780
     ctgagccaaa gggaagcttg catcaacgag gtgagatcta tccaatttgt ttcgattccg       840
     gtgcagagtg ctcccttatt aaagacgaca ttagcagtaa gttatctggt aaacgtataa       900
     acaatactgt aatgataaaa ggcattggtg gtggcagtgt gtgcagtaca ttgcaaatct       960
     tgagtgaagt cactataaac gaaaatatta tggaaatatt atttcatgta gtcccgaacg      1020
     agcaaatgag gaatgatatt ctgatagggc gagaaatact taaacaagac ttttatgtaa      1080
     ttttgacatc cgataatttt aaagttgtaa aatcaaaaac tgttaataat tgttctttta      1140
     tatgttaatt gcgctgttat gttactgtta ctgcattgta ttgattcatc gcttctaaat      1200
     aaataaatat ataaaaaaaa aaaattgttc cgttactgag cgatcgttta ctttgtccga      1260
     tattgacacc gaattagtcg acaatgagaa agctcaatta attgagttac ttgaaaagca      1320
     ctcgacttca tttaccaacg ggatacctca tactcgagta aatacaggcg aaatgaaaat      1380
     ccgtttgatt gatccaacta aaactgttca gcgccgacct tacagactta gccccgaaga      1440
     gagagaagta gtgcgaatcg aggtgagcga attgataaga tgtaatattg ttcgcccaag      1500
     ttgctctccc tttgctagcc ccatgttgct cgtcaaaaag aagaacggaa ccgaccgtct      1560
     atgtgttgat tttagagagc taaactcgaa cacgatttcg gataaatacc ccttgccgct      1620
     tatcagcgat caaattgcta gacttcgcgg agcaaattat ttcacatgcc tggatatggc      1680
     aagtggtttc caccaaatcc cgattcaccc tgaatccgtg gaatatactg catttgtgcc      1740
     agacggcctc aaaaatgcgc catctgtttt ccagcgcaca gtcataaatg cacttggtga      1800
     ccttgctaac tcttttgtaa tcgtttacat ggacgacata atggtagtat cgccaaccaa      1860
     ggaattggct ttggaaaggt taaaaactgt tttgaatgtt cttacaaagg ctggttttac      1920
     ctttaacctt gctaaatgca gttttctcaa aacaacggtt cagtatttag gctatgaagt      1980
     gcgagcggga gaaattcgtc cgaatgtgcg aaagatatct tcattaagct ccttgcctcc      2040
     tcctcaaact ctctccggcg ttagacaatt cattggcttg gcctcttact ttcgcaaatt      2100
     cgtgtctgga ttctcccaac ttatgaaacc attgtattca ctttcgtctg gtagcggcaa      2160
     gattacatgg agcgctgagc tggaagagat cagacttaaa gttgtgacga tcctcacaaa      2220
     tgagcctgct ctggtaatct tcgacccgca atatcctatt gagttgcaca ctgatgcaag      2280
     tgcctgtgga tatggagcga tacttttgca ccgtatagaa agtaagcccc atgtaatcga      2340
     atacttcagc aaaacaacta cctctgttga atctagatat cactcctacg agctggaaac      2400
     cttggcagtg gtaaaagccg ttaaacattt tcgccattac ctaattggcc gtgagttcgt      2460
     tgtctataca gactgcaatt cattaaaagc ttctcgcaca aaaatagatt taacccccag      2520
     agttcaccgc tggtgggcct acttacaatc gtttaatttc gaaattcagt atagagaggg      2580
     taagcgtatg gctcatgtgg atttcctatc aagaaatcct ttatcacccg aacacaattt      2640
     gtcaataaac aagattcccg aaaaaagagt aaatctgtct gaaatttcaa gtacttggct      2700
     tcttgctgag caacggttag accttgagat aatagaaatt gttaacaaat tggagtcaga      2760
     tgaattggcc gaaaacttgg ccaaaacgta tgatttgcga aaaggtgtat tatatcgcaa      2820
     ggtccaaaga cgaggtagaa caagttattt accagttgta cccagagctt tcaaatggtc      2880
     agtaattaac caggtacacg agtcgataat gcatttaggg tggcaaaaga cacttgataa      2940
     agtgtaccag tattattggt tcgctaaaat gaacaagtat gttcgaaaat ttttttcaaa      3000
     ctgcataact tgtagatcag tgaagtcatc ttccgggaag gttcaggcgg aacttcattc      3060
     cattccgaag acaagtatac cgtggcacac catccacata gatataacgg ggaaattaag      3120
     tggcaagagc gatttgaagg aatatgtcat tgttcagatc gatgcctata caaagtttgt      3180
     ttatctgtat cacaccttaa agatagatgc cgaaagctgt gttaatgcta tgaaatcttc      3240
     catatcctta tttggagtac cagatcgcat catcgccaac cagggcagat gttttactag      3300
     ctctaagttt tcagagtttt gcgtatcgca gaaagttgaa cttcacttga ttgctacggg      3360
     aatgagccgt gcaaatgggc aagtggaacg ggtgatggaa acactgaaaa atttgttgtc      3420
     agtggtagaa tcaagtcaac gatcgtggca ggacgcactt ggcgaagtcc aacttgcact      3480
     gaattgtaca atttctcgtg ccactgaggc aagtccgtta gaaatgttaa ttggtaaaca      3540
     ggcttgaccc cttggattag ttcccccatg tgagaccgaa tgtgaaatag atatggcaac      3600
     tgttagagct catgcgacag aaaatatgaa ttcttagcgt cttacgacaa atcccgattt      3660
     gatagcagta gggcagccgt tgacaaacac cacgtaggtg actatgtgct attgaggaat      3720
     gaagaaagac accaaactaa gttagatccg aaattcagag gaccgttttt ggtaactgaa      3780
     gtattagagg gtgacaggta tacactaaag tcgttgacga gtaaccgatc gttcaagtat      3840
     tgccatgaag atatacgtaa aatgccggat gcagaaatcc cgaatgagtt aaacgagaat      3900
     gtagagcaat agctgaaata tagaaacagt tgaatgaaaa gaaaagcccg ccaatgagtt      3960
     cttttgtgaa cgagagatat ccgtctaggt gagacgatga attgtgagtt atccgtctag      4020
     gtgagacgat gaattgtgag ttatccgtct aggtgagacg atgaattgtg agttatccgt      4080
     caggtgagac gatgaattgt gagttatccg tccaggagag acgatgagtt tggattgaat      4140
     taataatcaa gtgtgtgtga actggcggaa gatcgatata tagaaatcga taaatgataa      4200
     tgttaagata agttgtgagc tgatgtatta ctgatcaatg gaactgaata tgaaaataga      4260
     ataagttatc ccagcaacag tgaaataaga gctgttttgt ttcttcacag aattaagatt      4320
     taagaaatac acctaataaa gtcaaactaa tgaaattaaa tgttattgaa tagtgatgaa      4380
     agtaggtgat cttgatatct tggtatctcg gtatcaaaag cttacacgag gacgtgaaat      4440
     gtcagaatgg ccgtgtcgtg gcgaaaataa tgagtatgcg tgtagtcgct gtttacttct      4500
     tctccatgtt ccctttgcta ttatgcgtgt tcctatttat gaacacgtgg caaaaata        4558
//
ID   LINE2C_CB   repbase;    DNA;    INV; 3234 BP.
XX
AC   .
XX
DT   08-JUL-2004 (Rel. 1, Created)
DT   08-JUL-2004 (Rel. 1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of LINE retrotransposons - a
DE   consensus.
XX
KW   LINE; Cb000207; LINE2C_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3234
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-3234
RA   Pavlicek A., Jurka J.;
RT   "LINE2C_CB - a family of LINE retrotransposons.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are 98% identical to the consensus.
CC   Distantly similar to LINE2A_CE and LINE2E_CE. No functional ORF
CC   detected.
XX
SQ   Sequence 3234 BP; 940 A; 530 C; 964 G; 797 T; 3 other;
     taataatata tttatttgca atgcatgggg gaaatcgata gataatttgg caagaaatgg        60
     gacctgtaca aataaaagaa gtaaaatgac cagacggacc gacnagagtc ctgtaggtca       120
     agtgggaggg atcagaatat cataaggaat cgctcctact cgcttagcaa acgccaccgg       180
     actgagctta gaatttatca ccttacatac acggttccac atagacaagt ttctgtgaag       240
     gaagcagtca aagtattgac cgttgatttt gaacaaatac ggggctctgt tagaatggct       300
     gggaagaatg taggacgaca tagagggaaa atggtatgag tttataacaa ttttgtgata       360
     ggtacgaaga actagaaggg tgcggcgatg aagggtggtt agcatagaga actgggatag       420
     gcgatcggtg tatgaattga agggcatatt acatctctgg aagacttttc tggtgaaata       480
     acgaagagga gattctagtt tattggcaag tgtggcattg gatggatcga aaagttcaca       540
     accgtattcg aggaccggtc taatgtaggt gtcgaagaga cggaaatata aacaagggtt       600
     tttcgattgg aacgttttca gtatttggcg ggacttgagt ttagcagagt aggcaataag       660
     attgatgtgt ttgtcgaatt gaagttgatc atcaactagt atacctaggt ccttgaatga       720
     gcgatgcgga gtaatggggg atcccttaat aaagtaaact gtcttaggat tgcgtttacc       780
     ataatgcata acggccgtct tattttcggc tagtttgagt ctccagatgt cacaccagtg       840
     ctcgacgatt tcgatacttc tctgcatatc caatgggtcg gaaccggtta tttttaggtc       900
     gtcggcgaac gccgtgacat gaacattggg aggaaagagg ccgagtaagt cgttaatgta       960
     gatcagaaac aaaaaggggc cagtgacact tccttggggg actccggatt tgacaacaat      1020
     ctcgctggtt gacattaggc cattaacctt gacgttggat gagcggttgc tgagaaagga      1080
     ctcgaaccaa acgcagcatc gttcatcaat acctattcgc ctcattttca gcagcaagag      1140
     attgtgtggg acagtgtcga atgccttgcg aaaatcaaag taaataacat ctacgaattg      1200
     ttgcttattt gctaaggttt tctgtattct ggaagtggac tcaaggacgg ctagaacaca      1260
     ggatcgctta ctgacgaatc cgtactgatt cggagaaata ctcggaccga taacacgctt      1320
     tagctcttca aggactaatc tttcgaagag tctggaaagt gcatgagtga gcgttatggg      1380
     tctgtagtta ttagcgtcat atttggatcc cttcttgaat attgggctaa caaccgagtg      1440
     cttccagatc tcaggaaatt tggcggagga gaaggattct tggaagatga gcgaaagagg      1500
     gatggttatc gcatcactgc actttttgat tacaaggaag ttgataaaat ccggggagaa      1560
     accgactttt gagggtagag aaccgatgtg ctttgcaata tttagaggag aaaaatcagg      1620
     acagacggca aagggagcga tagcagggag ggcggagaaa ggagggcttg ggggcgagaa      1680
     ggcctcttgg aagacggaag aaaattcgtt ggctagttca gaagcgtctg aggataaggt      1740
     gccattaacc aggagagaaa tgggacagtg cgggggacgg agtctagatt taacgaaatg      1800
     gaagagttct ttggggttct tgttgttgat aatagaaagc tcctcccttg cacgcgccct      1860
     cttaactcga ttgagctgtc gccgaacaag cagtttgagc tggggtctag ggagggacgg      1920
     gttgcgacgt tggatgaacc tgaaaacctt gggttttcta tgcgagaagg ttggacgacg      1980
     agcacggacg gttggagtgt agaggactac gagctcgttg aaaatggcgg agaaatgagc      2040
     aagtttcgaa tcaaccgtgg agaagaaaga tagctgcctg ggccagttgt aagagcagag      2100
     atgatccaaa agacgcttga cgtcacattt tatatagtct agacgttttg acgaggtagt      2160
     gttgaggatg ggtgaaggag gagaaatact aggtaggatt gtttcgaaga ggacagagga      2220
     atggtcagag agcaggaagg gtggaagatt cacggttttc gagatgtgtt gcggcttgtt      2280
     acaaaatact aggtctaaga agttttcagc accgcaatga ctggttctgg ttgggaagtc      2340
     tactatctga gtcagatcgg atagtgacat caggctttcc aggccagcag gcaaatcatt      2400
     aggcagaagg ttatcagaag accagtttat ctgcgggtaa ttgaaatcac cgagaaggaa      2460
     attgaagcga taactgttgc tgagcagtaa agatagattg tgaaaaagta catcggattg      2520
     ggctggtgag gtggacggag gacggtatac taagacgaat cggcaactta tctgaagcag      2580
     atcgacagtg ataatttcgc agtggtgtag ggggtaaaac tgggagctga gactatcagc      2640
     ctctaccagc tgtatgtctt tgcgggcgaa naccgcgacg ccacctccct tgcctttagg      2700
     gttaggggac cgtctgtcga agcgaagaca atgaagggtc gaagatgagg agagagagtc      2760
     agggacggat ggggagagaa aggattcagt aacaaaatga aggtcgatct ggttgtctag      2820
     catgtcagag tgaagtactt ggaggcgttc tgcagatgct atagatctga cattggagag      2880
     tttgcaggag agatttatca cagctgattt gactgcggaa gcaggtaaag ggttcgtttt      2940
     agggaggggt ttcaagggaa agggggacaa aactggggcg gcgatatgac acggggagat      3000
     atcggagacg ggacgaggtg ccacggttgg acagacaata acatttgaat ggacatttat      3060
     acttttaaac agacgttgag acatgcatgt ggtatcatga tggtagatgt ccgagcgggt      3120
     ccggtggcna atttcctatg cagaagagga gggagcggct ccctgtgcag gggctttggg      3180
     aaggggtctg gggtttgagc tctcaacaat agtaaggtct ctaacaaaat attt            3234
//
ID   DMLTR4      repbase;    DNA;    INV; 478 BP.
XX
AC   J01110;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.melanogaster mobile dispersed genetic element mdg1, 5' LTR.
XX
KW   Repetitive element; transposon; terminal repeat; DMLTR4.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-478
RA   Kulguskin V.V., Ilyin V.Y., Georgiev P.G.;
RT   "Mobile dispersed genetic element MDG1 of Drosophila
RT   melanogaster: nucleotide sequence of long terminal elements.";
RL   Nucleic Acids Res 9, 3451-3464 (1981).
XX
DR   GenBank; J01110; Positions      31     508.
XX
SQ   Sequence 478 BP; 142 A; 71 C; 80 G; 185 T; 0 other;
     tgtagttaat ttgaattcta atacttctga tgtagttaat aaagtctcaa aacgcagttg        60
     gtcattttat ctttatttgg tttttattaa gcgagtgtac attcctgatc tattcctgat       120
     ttataactga tcttagtgtg gtctacaggg agatctcttg tgacagccaa gtgctgacac       180
     tagcaaattc tgcaatatgt atgtatgaag ttcatactcg ataaccaatg ggagtcgagt       240
     ccgaccccta aaggcgtaca tcctgaattc gcatatttag tattagggtg tatctaaaga       300
     tctactaggg tgaccctaag gaattagggt ggtcctaagt ttacttatta gttgacttat       360
     tattatgatt catattataa ttattattaa tattattatt attattgtta ttattattgt       420
     tattatattc gtatatacta catctccctc cttttgaaaa ataacgtaat aacatgaa         478
//
ID   Saci-1_INT  repbase;    DNA;    INV; 5312 BP.
XX
AC   BK004068;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Schistosoma mansoni Saci-1 LTR retrotransposon mRNA, internal
DE   sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Saci-1_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004068; Positions     116    5427.
XX
CC   Key Location/Qualifiers
CC   CDS 125..5167
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04498.1"
CC   /db_xref="GI:44829169"
CC   /translation="MPNNRAKKSIPKLIGEGEDKVNDKSLSTKQVFSDVFTPHGSNVF
CC   KESYSDSDSDVMLDKVADLSLDKGERLRHAVSGTTPKVPIVGLELPKVELCYFDGKPK
CC   GYWKFIKQYDTYVAARVSDDSQRLLYLLHYCKGKAKAAIEGCVMMEATSGYKRARDIL
CC   KRLFGQAHVIARETLEDLFNDVRRGCHDAEQLSSLAIKMENCSMILEQMNYTADLNSL
CC   VTLERVVRFLPQPMQRQWAEVVDSLTEEDREPTFAELTQFVAAKARVAASRFGQLAER
CC   PRGGVTTKSCYHSVVRPKNTPIASAKCSMCSGDHAVYECSQFLALTTEERLSHVKGKS
CC   ICFVCLKQGHKAIECKVTRRCAIDGCSGRHHSLLHKGSAKSKSEDRLATVNHCGHDRP
CC   VDGHVCLGMIPVRLRSGNAEVVGYALLDNGSDVTLIRSGCLKLLGLNEEQSSVVVQTV
CC   SGNKATRVIKTPFEVYSLDQTEHVKIQGALVVSQIPGHKPTKTIMSSLVKWPHLSDVP
CC   LEVIDSGEVVLLIGCDVPEAHWVLDQRLGGRKNPYAVKTLLGWTVFGPTSFSGLKKKV
CC   SNCMSKLQTLEDQFRKLYDVEFADVYSSDKSPSVEDRAAIEIVERGTFYDGGRFVVPI
CC   PWKMYPNKKTGNYEVAASRLLSLKRRLLKDSNLYTKYAKSIESNLAKGYAQRVPEIQL
CC   RSDYLPRWYLPHHAVINPKKPEKLRVVLDCAAKFAGVSLNDMIYQGPDTTAELVCILL
CC   RFRKEAIAICADVEEMFMQVKVPESDQGALRFLWWQETDMSKEPSEFQMTVHPFGATS
CC   SPFCANFALIKTAQTFSDGFDSYIVEAVKNNFYVDDCLVSFSTSNQAKNFVKQVSELL
CC   CKGGFALKKWITNSVEVRSVLHGVCKEGPVMEMSRDCDVIHRTLGVQWDCERDVFQFH
CC   FDAPERPLTRRGILSVASSLFDPLGLISPVCLTVKLLLQELCKSQIGWDQPINEPYTS
CC   IWLNWVNFMRQISHVKIPRGIKNKLDEPNARVELHLFSDASEIGYGAVAYARVSYLNE
CC   PPYCILLYSKSRVAPIKPVTVPRLEMAAAVLSVRLSEVLQRSLPNFFCEVNFHTDSMI
CC   VLYYIRNTGNRYSTYIANRLAILHQHTKVEQWTYVKSSENPADWTSRGIQKLADLESW
CC   IKCPTLQQAEFGKTITDCPQTIPDSIEFRKTAVVNLSKLNYDKFPIISYYSDWLRLVR
CC   AVAWLRRFIEYWMILHSSSLEGSVHLGCLKFEELESAKRKVLMIVQKEVYGRLLSEFK
CC   NNSNVNSQNDLKRLSPVMRDGLLCVGGRLNYSDYPDDFKYPVILPSRHLVTEMIVRHY
CC   HKEEGHSGTSQVLAAIRKYYWIVKGTSTVRRVIGKCVICRRYTTNSGQQLMAPLPACR
CC   VKPGWHSFSIVGVDYFGPILVKRGRSLEKRYGCIFTCLQTRAVHIELAYSLNTDSFVM
CC   ALLRFIGRRGKPSEIYSDNGSNFVGAISELRKYVRQWDQQRISNELSAKQIQWHFNPP
CC   SSSHRGGVWERMIRSVRRLLLLITREQTLNDETLGTYLVEIERILNDRPLTPIVQDAN
CC   DKLALTPNSLLLLRECDSIVDESSIRVNYDKRWKQVNYLANVFWKRWLREYIPSLQAR
CC   QKWLVERRNFQPGDVVIVVSDIFTRGKWPLGVIESCETDKDGKVRTVSVRTNNGSIRR
CC   DIRKVCLLEGSN".
XX
SQ   Sequence 5312 BP; 1580 A; 928 C; 1350 G; 1454 T; 0 other;
     gttctaaacg aatattggtc ggttggcagc ttggtccgtg ttcaacagtc ctgaacaaat        60
     attggtcggt ttgcagcttg gtcctcgctc acagttctga aacaaatttg gtcgataatt       120
     cgagatgcct aacaatcgtg caaagaagtc aatccctaag ctgatcggag agggtgaaga       180
     caaggttaac gacaaatccc ttagtacaaa gcaagttttt tctgatgtct ttacgcctca       240
     tggttctaat gtatttaaag agagctatag tgatagtgat agtgacgtaa tgttagataa       300
     ggtagcggat cttagtttag ataaagggga aagacttagg catgcagtct cgggcacaac       360
     acctaaggtt cctatagttg ggttagagct accgaaagtc gaattgtgtt attttgatgg       420
     aaagccgaag ggatattgga agtttataaa acaatacgat acctacgttg cggcaagagt       480
     atctgatgat agtcaacgtt tgctgtattt gctccattat tgcaagggta aggctaaagc       540
     agccatcgaa ggatgtgtaa tgatggaggc cacgtctggg tataaaagag ctagagatat       600
     tttgaaacga ttattcggtc aagctcatgt tatagcaaga gagactttgg aggatttatt       660
     caatgatgta aggcgtggtt gtcatgacgc cgagcaactc tcaagtttag caataaagat       720
     ggaaaattgt agtatgattc tagagcaaat gaattacact gccgacttga attcgctggt       780
     tacgttagag agagtagtaa gatttctgcc ccaacctatg caaagacaat gggccgaagt       840
     ggtagatagt ttgacagaag aggacaggga gccaacgttc gccgaactca ctcagttcgt       900
     agcagctaaa gcgagagtag ctgcgagtag gtttggacaa ttggctgagc gtccaagagg       960
     cggagttact actaaatcat gttatcattc cgtagtgaga ccgaagaata caccgatcgc      1020
     aagtgctaag tgtagtatgt gctcaggcga tcacgctgtt tacgagtgta gtcagttctt      1080
     agctctcacg acagaagaac gtctgtcgca cgtcaaaggt aagagtatct gtttcgtatg      1140
     tcttaaacaa gggcataaag ctattgaatg caaggtgacg agacgttgcg ccattgacgg      1200
     atgttctggg agacatcact ctctgttgca taagggttcg gcaaagagta aatcagagga      1260
     tagactggct acggtgaacc attgtggaca tgataggcca gtggacggtc acgtgtgtct      1320
     gggaatgatt cccgtgaggt tgagatcggg aaacgctgag gttgtggggt atgccctttt      1380
     ggataatggc tctgacgtaa ccttgatcag gtcaggatgt ttgaagttgt tggggctaaa      1440
     cgaggaacag tcgtcggtgg ttgtacaaac cgtgagcggc aataaggcaa cacgagtgat      1500
     aaagacacct tttgaggtgt attccttaga tcaaactgag cacgttaaaa ttcaaggagc      1560
     cctggtagtg tcgcaaatac ctgggcataa gccgacgaaa acaatcatga gcagcctagt      1620
     gaagtggccg catttgagcg atgtaccttt agaagttata gattctggcg aagttgtgtt      1680
     actgattggt tgtgatgtcc cggaagccca ctgggtactc gatcaacggt taggtggaag      1740
     aaaaaatcca tatgcagtaa aaacgttgct cgggtggacc gtgtttggac ctacatcatt      1800
     ttcgggattg aagaaaaaag ttagtaattg tatgagtaag ctacagacgt tagaagatca      1860
     attccgtaag ctttatgacg tagaattcgc tgatgtatat tcaagcgata aatcgccgtc      1920
     agtagaggat cgagcagcaa tagaaatagt ggaaaggggt accttctacg atggtggtcg      1980
     cttcgtagtt ccaataccat ggaaaatgta tccaaacaaa aaaacgggaa attatgaggt      2040
     agcggccagt agattactta gtttgaagcg taggttgttg aaggatagca acctatacac      2100
     taaatatgct aaaagtattg aaagtaatct tgctaaagga tatgcacaaa gggtccctga      2160
     aatccagtta aggtcagatt atctccctcg ctggtatctg cctcatcacg cggtaataaa      2220
     tcccaaaaag ccagagaaac tgagggtggt gctggactgt gctgctaaat tcgctggggt      2280
     ttcactgaat gatatgattt atcaaggtcc tgacactacc gcggagttag tttgtatatt      2340
     attgcgattc cgcaaggagg caattgccat ttgtgccgac gttgaagaaa tgttcatgca      2400
     agtaaaggtc cctgaatccg atcaaggagc cttacgattc ctatggtggc aagagacaga      2460
     catgtcgaaa gaaccatcgg agtttcaaat gaccgtccat ccattcggag caacgtcttc      2520
     gccattctgt gcaaactttg ccttgatcaa gaccgctcaa acattctccg atggatttga      2580
     tagctacata gtagaggcgg ttaagaacaa tttctatgtg gatgactgcc tagtatcttt      2640
     ttccactagt aatcaagcaa aaaactttgt caagcaagta agtgaattac tgtgtaaagg      2700
     cggttttgca ttaaagaagt ggataacaaa ctcggtagaa gttaggtccg ttttgcatgg      2760
     ggtatgcaag gaagggcctg tgatggaaat gtctagagat tgtgatgtca ttcatcgtac      2820
     cttgggggta caatgggatt gtgaaagaga tgttttccag tttcactttg acgctccaga      2880
     aagaccgttg actaggagag gtattctatc tgtggcatct tctttatttg accctttggg      2940
     tctaatttct ccagtttgtc tgacggtcaa acttctgctg caagagttat gtaagtccca      3000
     aataggctgg gaccagccga tcaatgagcc ttatacgtcg atttggctaa actgggtgaa      3060
     ctttatgcga cagataagtc acgttaaaat acctcgaggg atcaagaata aattagatga      3120
     acctaatgca cgggtggaat tgcatttgtt tagtgatgcc tccgagattg gttatggagc      3180
     agtagcttat gcacgagtca gttatttgaa cgaaccgccg tattgtattt tgttgtacag      3240
     caagtccagg gtcgcaccta taaaaccagt cactgttccg aggcttgaga tggcagcagc      3300
     agttttaagc gtaaggctaa gtgaagtgct acaaagaagc ttacccaatt ttttctgcga      3360
     agtaaatttt catactgatt ctatgatagt gttgtattat attagaaata caggaaaccg      3420
     atatagtacc tatattgcta atcgtcttgc tatcttacat cagcacacta aggttgagca      3480
     atggacttac gtcaaatcgt cggagaaccc agcggattgg acttcgagag gtatacaaaa      3540
     attggccgac cttgagtcgt ggattaagtg ccctacttta cagcaagccg agttcggtaa      3600
     aactattacc gattgtccac aaactattcc ggacagtatt gagttcagaa agactgctgt      3660
     ggttaatttg agtaaactga attatgacaa gttccctatt atttcttatt actcagactg      3720
     gttaagatta gtcagggcag tagcttggct acgaaggttt atagaatatt ggatgatact      3780
     tcattcatca agtcttgaag gatccgttca tttgggatgc ctgaagttcg aagagcttga      3840
     aagtgccaag cgtaaggtct taatgatagt ccagaaagag gtatatggga gattactcag      3900
     tgaatttaag aacaacagta atgtgaatag tcagaatgat ctgaagcgtt tatcgcctgt      3960
     aatgcgcgac ggtttactat gtgttggagg tcgtctaaac tactccgatt accctgatga      4020
     cttcaagtat ccagtaatat tacctagtcg tcacttagtg acagaaatga tagtcagaca      4080
     ttatcataaa gaagaaggac actcaggaac ttctcaagta cttgccgcaa tccgaaaata      4140
     ctattggata gtaaaaggga ccagcacagt caggagagtg ataggtaagt gtgtaatttg      4200
     tcggcggtat acgacgaact caggacagca attgatggca ccgcttcccg catgtagagt      4260
     gaaaccaggc tggcatagtt tctcaattgt aggggtggat tacttcggac ccattttagt      4320
     aaaaagggga agatcactag aaaagaggta tggttgtata tttacttgtt tgcaaacacg      4380
     tgcagtgcat attgaattgg cttatagttt gaataccgat tcatttgtga tggccctgtt      4440
     acgttttatt ggaagaagag ggaagccctc agagatatat agtgataacg ggtcgaactt      4500
     cgtgggtgca atatctgagc taaggaaata tgttcggcag tgggaccaac aaaggataag      4560
     taatgaattg tcagcgaagc agattcagtg gcattttaac cctccgtcat ccagccacag      4620
     agggggtgtg tgggaaagaa tgataagatc cgtacgtaga ctattattat tgatcaccag      4680
     agaacaaacg ttgaatgatg aaactttagg cacctatttg gttgaaattg aaaggatatt      4740
     gaacgatcga cccttaaccc cgattgtaca agatgctaac gacaagctag cattaacacc      4800
     taacagtttg cttttgttga gggaatgcga cagtatagtt gacgaaagta gtatcagagt      4860
     taattatgat aaacgctgga aacaggtgaa ttatctagct aacgtgtttt ggaaaaggtg      4920
     gctgcgtgag tacataccat ccttacaagc tcgtcaaaaa tggttggttg agcgtcgtaa      4980
     tttccagcca ggtgatgtag taattgtggt ttctgatatt ttcacccgcg gtaagtggcc      5040
     tctaggggta atagagagtt gtgaaacaga caaggacgga aaggttagga cggtgtcagt      5100
     acgtactaat aacgggtcta ttagaaggga tatacgtaag gtatgtctcc tagaagggtc      5160
     caattagtta attgtcaaac aatgtagaca gaacgagtag gcgtactgtt gtaagtccta      5220
     cccgttcttt tagtgaggaa agcgattagg tgaaccatgg caaaaaagac atcagaatag      5280
     cttgtgcagt atggagggat tttgggggcc gg                                    5312
//
ID   CELE1       repbase;    DNA;    INV; 307 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans Cele1 repeat - a consensus.
XX
KW   MITE; CELE1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-307
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(19), 8886-8890 (1995).
XX
RN   [2]
RP   1-307
RA   Jurka J.;
RT   "CELE1.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 307 BP; 122 A; 43 C; 43 G; 95 T; 4 other;
     aatgtagttt cgaaattgaa aaaaatcatt aaaaatgaat aaaaattyta taaartttct        60
     aacaattaaa tttgttatta cgggaacaca aaattctgag aatgcgtatt gcacaacata       120
     tttgacgcgc aaaatatctc gtagcgaaaa ctacagtaat tctttaaatg actactgtag       180
     cgcttgtgtc gatttacggg ctcgattttt gaaatgaatt waaattattt atcrataaaa       240
     taatatgaaa ttcaatttca aaaatcgagc ccgtaaatcg acacaagcgc tacagtagtc       300
     atttaaa                                                                 307
//
ID   TWIN        repbase;    DNA;    INV; 222 BP.
XX
AC   .
XX
DT   23-OCT-2000 (Rel. 5.09, Created)
DT   23-OCT-2000 (Rel. 5.09, Last updated, Version 1)
XX
DE   Twin SINE retroposons from the Culex pipiens mosquito - a
DE   consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; TWIN.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-222
RA   Feschotte C., Fourrier N., Desmons I., Mouches C.;
RT   "Birth of a retroposon: the Twin SINE family from the vector
RT   mosquito Culex pipiens may have originated from a dimeric tRNA
RT   precursor.";
RL   Mol. Biol. Evol. 180-0 (2001)In press.
XX
RN   [2]
RP   1-222
RA   Feschotte C.;
RT   "TWIN.";
RL   Direct Submission to Repbase Update (18-OCT-2000).
XX
CC   [2] (Consensus)
XX
CC   Twins define a new type of tRNA-derived SINEs. These ~220-bp
CC   elements
CC   consist of two tRNA(Arg)-related regions separated by a 39-bp
CC   spacer.
CC   Other tRNA-unrelated sequences include a 5-bp 5' leader and a
CC   short 3'
CC   trailer which is followed by a polyA tract of variable length
CC   (0-14 bp).
CC   According to this structure, we propose that the Twin SINE family
CC   has
CC   originated by retroposition of a dimeric tRNA precursor.
CC   The estimated copy number of Twins in the C. pipiens genome is
CC   ~500.
CC   The consensus sequence is derived from a multiple alignment of 6
CC   Twin
CC   copies. Pairwise identity between these copies ranges from 83% to
CC   96%.
CC   There are no obvious target site duplications flanking these
CC   copies.
XX
SQ   Sequence 222 BP; 48 A; 45 C; 70 G; 59 T; 0 other;
     gccgagcttc cgtggccgtg aggttacggg tttcgccttg taagcggaag gtgatgggtt        60
     cgattcctgt ctggctcggc aaagtcagat cccttcaaag agtaaatatg ctcactggga       120
     atactgaccg gtaggggatg ggtttcgact agcggcgtgc tggatttcca atccagaggt       180
     cgtgagttcg attctcgtac cgggatgatg aagttttaaa aa                          222
//
ID   HELICOPY1   repbase;    DNA;    INV; 2595 BP.
XX
AC   .
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOPY1 is a nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HELICOP superfamily; RCA1; RCC9;
KW   RCD1; RC35; HELICOPY1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2595
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repqetitive
RT   DNA sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
RN   [2]
RP   1-2595
RA   V V., Jurka J.;
RT   "HELICOPY1.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   There are about 50 copies of HELICOPY1 in the C.elegans genome.
CC   They are ~97% identical to the consensus sequence.
CC   Several portions of HELICOPY1 have been reported previosly
CC   as the RCA1, RCD1, RC35 and RCC9 minisatellite like repeats [1].
CC   The authors [1] have noticed a coclustering of these repeats but
CC   did not find a right explanation to it.
XX
SQ   Sequence 2595 BP; 933 A; 349 C; 534 G; 777 T; 2 other;
     atcattamyt atatataaaa aaatacagtt cgtctgtcca tagtttgtag tctatgtagt        60
     ctttgtagtc tgtgacgtca cacccaaatg tcagtgagaa ttgtgggcgg ggcctgtcac       120
     ctacccttcg tggtgagacc catcgtggtg agacccttcg tggtgagacc catcgtggtg       180
     agacccatcg tggtgagacc cttcgtggtg agacccatcg tggtgagacc cttcgtggtg       240
     agacccacat ttttggcggg aaattcaaat tttcagtgaa aaaattttgg cgggaaattc       300
     aaattttcag tgaaaaaatt ttggcgggaa attcaaattt tcagtgaaaa aaattttggc       360
     gggaaattca aattttcagt gaaaaaaatt ttggcgggaa attcaaattt tcagtgaaaa       420
     aattttggcg ggaaattcaa attttcagtg aaaaaatttt ggcgggaaat tcaaattttc       480
     agtgaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt       540
     caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg       600
     gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa       660
     aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat       720
     tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg       780
     aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa       840
     ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca       900
     gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt       960
     caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg      1020
     gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa      1080
     aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat      1140
     tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg      1200
     aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa      1260
     ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca      1320
     gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaacaatttt ggcggaaaat      1380
     tccaatttct gagaaaaatc gagaaatgtc tgcaatgttc cagaagtttc tagaaaattc      1440
     gagaaaattc cggaatggtc cagaattttc tagaaaattc gggaaaactc tggaatattc      1500
     cagaactttc tagaaaattc gagaaaattc tggaatgttc cagaattttc tagaaaattc      1560
     gagaaaactc tggaatgttc cagaactttc tagaaaattc tagaaagttc tggaatggtc      1620
     cagaattttc tagaaaattc gggaaaactc tggaatattc cagaactttc tagaaaattc      1680
     gagaaaattc tgcaatgttc cagaattttc tagaaaattc gggaaaattc tggaatattc      1740
     cagaactttc tagaaaaatc gggaaaagtc ggcaatgttc tagaactttc tagaaaattc      1800
     gagaaaattc cggaatggtc cagaattttc tagaaaattc tagaaagttc tggaatggtc      1860
     cagaagtttc tagaaaattc gagaaaattc cggaatggtc cagaattttc tagaaaatcc      1920
     gagaaagttc tggaatggtc cagaattttc tagaaaattc gggaaaattc tggaatattc      1980
     cagaactttc tagaaaaatc gggaaaagtc tgcaatgttc cagaactctc taaaaaattc      2040
     gataaaattc tgaaatgttc aatttcgtgg aaaaattcaa gaaacttctg caaagttcta      2100
     cacggggttc tggctcgacc ccgcgctcca ttggacactg aaatggcggg aaaaaacttt      2160
     gaaatcgcaa gaggaatttt cacgcagcgc gttgaaaaaa gtgtatgcat ttgcgcgtga      2220
     cggtgtttct tcaagttttg atactcctag aatattctga agtttcaata attttaaaaa      2280
     aatatcaaaa attgttataa ttttcagaaa cgctcgccaa aaactttcgg aaaggaccgg      2340
     aaaatgtttc atatgatttg aagaacgtag agaaaattat acgttcaaga aatttagaaa      2400
     tagttccagg aaacttgagg ttttaagttg taattgctca gaacttagtt atataatatt      2460
     tatgttgctc gaaaatttcc ggtaaccagg gaaaaaacgt tccatctgca aagaaggctt      2520
     agaaaattta gaatttgatt tcaattttga gtacgccagt cggagcacgc gcttcagcgc      2580
     gtgcgaacgg ctggt                                                       2595
//
ID   AY1_DH      repbase;    DNA;    INV; 496 BP.
XX
AC   X05043;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.hydei y chromosome-specific ay1 repetitive sequence.
XX
KW   AY1 repetitive sequence; AY1_DH.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-496
RA   Vogt P., Henning W.;
RT   "Molecular structure of the lampbrush loops nooses of the Y
RT   chromosome of Drosophila hydei.";
RL   Chromosoma 94, 449-458 (1986).
XX
DR   GenBank; X05043; Positions       1     496.
XX
SQ   Sequence 496 BP; 173 A; 105 C; 92 G; 126 T; 0 other;
     gaattctaca cacccgtttc ccaaagaatt ttcgtttatc cgtgtgtgtc aaatgtgaaa        60
     tgccaatcga cattataaaa gcagtcctga actaaactgc gagggatatt cagaaaatat       120
     aaaaattagc attagcaaat taattctaca agtcccgtat cccaaagaat tttccttcat       180
     cccggtgtgt caaatttgaa atgccactcg acattataaa agcagtcctg aactaaaagt       240
     aaagttcgcc gtacaagaaa cacttctccc gacctgccca aaagcgaaat tggttgattt       300
     tgatgctgaa atagtaagcc ggcagccgat tagcgagctg tcatatacct gatgctgggt       360
     aaagcaatgc aaccggtaga tgtagaattt ttgcaaaatt aaaggaaacc tcaaaagttc       420
     tcggactacc ttgaagagac aacaatcata ttcaggcata taaccatccg gtaaggcact       480
     aggacaaact tcgaga                                                       496
//
ID   TFP2        repbase;    DNA;    INV; 2475 BP.
XX
AC   J04364;
XX
DT   30-APR-1998 (Rel. 3.2, Created)
DT   30-APR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Trichoplusia ni transposon TFP2.
XX
KW   Autonomous DNA transposon; TTAA superfamily; TFP2.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-2475
RA   Cary C.L., Goebel M., Corsaro G.B., Wang G.H., Rosen E.,
RA   Fraser J.M.;
RT   "Transposon mutagenesis of baculoviruses: analysis of
RT   Trichoplusia ni transposon IFP2 insertions within the FP-locus of
RT   nuclear polyhedrosis viruses.";
RL   Virology 172(1), 156-169 (1989).
XX
DR   GenBank; J04364; Positions       1    2475.
XX
CC   TTAA target site duplication. Transposase encoded by TFP2
CC   transposon has been found in human (LOOPER transposon in
CC   humrep.ref).
XX
SQ   Sequence 2475 BP; 802 A; 418 C; 496 G; 759 T; 0 other;
     ccctagaaag atagtctgcg taaaattgac gcatgcattc ttgaaatatt gctctctctt        60
     tctaaatagc gcgaatccgt cgctgtttgc aatttaggac atctcagtcg ccgcttggag       120
     ctcggctgag gcgtgcttgt caatgcggta agtgtcactg attttgaact ataacgaccg       180
     cgtgagtcaa aatgacgcat gattatcttt tacgtgactt ttaagattta actcatacga       240
     taattaatat tgttatttca tgttctactt acgtgataac ttattatata tatattttct       300
     tgttatagat atcgtgacta atatataata aaatgggatg ttctttagac gatgagcata       360
     tcctctctgc tcttctgcaa ggcgatgacg agcttgttgg tgaggattct gacagtgaaa       420
     tatcagatca cgtaagtgaa gacgtccaga gcgatacaga agaagcgttt atagatgagg       480
     tacatgaagt gtcagccaac gtcaagcgta gtgaaatatt agacgaacaa aatgttattg       540
     aacaaccagg ttcttcattg gcttctaaca gaatcttgac cttgccacag aggactatta       600
     gaggtaagaa taaacattgt tggtcaactt caaagtccac gagcggtagc cgagtctctg       660
     cactgaacat tgtcagatct caaagaggtc cgacgcgtat gtgccgcaat atatatgacc       720
     cacttttatg cttcaaacta ttttttactg atgagataat ttcgcaaatt gtaaaatgga       780
     caaatgctga gatatcattg aaacgtcggg aatctatgac aggtgctaca tttcgtgaca       840
     cgaatgaaga tgaaatctat gctttctttg gtattctggt aatgacagca gtgagaaaag       900
     ataaccacat gtccacagat gacctctttg gatcgatctt tgtcaatgtg tacgtctctg       960
     taatgagtct gtggatcgtt ttggattttt tgatacgatg tcttagaatg gatgacaaaa      1020
     gtatacggcc cacacttcga gaaaacgatg tatttactcc tgttagaaaa atatgggatc      1080
     tctttatcca tcagtgcata caaaattaca ctccaggggc tcatttgacc atagatgaac      1140
     agttacttgg ttttagagga cggtgtccgt ttaggatgta tatcccaaac aagccaagta      1200
     agtatggaat aaaatcctca tgatgtgtga cagtggtacg aagtatatga taaatggaat      1260
     gccttatttg ggaagaggaa cacagaccaa cggagtacca ctcggtgaat actacgtgaa      1320
     ggagttatca aagcctgtgc acggtagttg tcgtaatatt acgtgtgaca attggttcac      1380
     ctcaatccct ttggcaaaaa acttactaca agaaccgtat aagttaacca ttgtgggaac      1440
     cgtgcgatca aacaaacgcg agataccgga agtactgaaa aacagtcgct ccaggccagt      1500
     gggaacatcg atgttttgtt ttgacggacc ccttactctc gtctcatata aaccgaagcc      1560
     agctaagatg gtatacttat tatcatcttg tgatgaggat gcttctatca acgaaagtac      1620
     cggtaaaccg caaatggtta tgtattataa tcaaactaaa ggcggagtgg acacgctaga      1680
     ccaaatgtgt tctgtgatga cctgcagtag gaagacgaat aggtggccta tggcattatt      1740
     gtacggaatg ataaacattg cctgcataaa ttcttttatt atatacagcc ataatgtcag      1800
     tagcaaggga gaaaaggttc aaagtcgcaa aaaatttatg agaaaccttt acatgagcct      1860
     gacgtcatcg tttatgcgta accgtttaga agctcctact ttgaagagat atttgcgcga      1920
     taatatctct aatattttgc caaatgaagt gcctggtaca tcagatgaca gtactgaaga      1980
     gccagtaatg aaaaaacgta cttactgtac ttactgcccc tctaaaataa ggcgaaaggc      2040
     aaatgcatcg tgcaaaaaat gcaaaaaagt tatttgtcga gagcataata ttgatatgtg      2100
     ccaaagttgt ttctggactg actaataagt ataatttgtt tctattatgt ataagttaag      2160
     ctaattactt attttataat acaacatgac tgtttttaaa gtacaaaata agtttatttt      2220
     tgtaaaagag agaatgttta aaagttttgt tactttagaa gaaattttga gtttttgttt      2280
     ttttttaata aataaataaa cataaataaa ttgtttgttg aatttattat tagtatgtaa      2340
     gtgtaaatat aataaaactt aatatctatt caaattaata aataaacctc gatatacaga      2400
     ccgataaaaa cacatgcgtc aattttacgc atgattatct ttaacgtacg tcacaatatg      2460
     attatctttc taggg                                                       2475
//
ID   TRANSIB2    repbase;    DNA;    INV; 2820 BP.
XX
AC   .
XX
DT   14-AUG-2000 (Rel. 4.3, Created)
DT   14-AUG-2000 (Rel. 4.3, Last updated, Version 1)
XX
DE   TRANSIB2 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; TRANSIB family; TRANSIB2p transposase; TRANSIB2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2820
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB2.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB2 belongs to the TRANSIB family of DNA transposons.
CC   It has generated 5-bp duplications of the CANTG target
CC   sites upon its integration into the genome. TRANSIB2 has 43-bp
CC   terminal inverted repeats and it encodes putative transposase
CC   which is not similar to any known transposases.
CC   There are ~30 copies of TRANSIB2 which are ~95% identical to the
CC   consensus sequence. Several sequences are 98% identical to each
CC   other and form a minor subfamily that was active most recently in
CC   the D.melanogaster genome.
CC   TRANSIB2 encodes protein TRANSIB2p involved in transposition:
CC   FYIGKFEFRHSDLLYIWRRNNRQVSYVSDYISSAINNNNLESKKTEEIDKKIVNFELFIKRKLP
CC   ECNRQLDRFISKHTKWMASKITILVSDFENSKTPQQMGRRNLSYQNAGERLKRKLASNLASESD
CC   HDTSLLIHAATVSARKECKRDVAFVLKETLKTPEFPSESRMQIQWQKPTPLSPDEALAYLLENT
CC   LTKQQYISTRLLNKSHNSDIYPPYNEVIEAKLQCRPEGIEVMENTAQVLLQNLLDHTAQRLIKL
CC   QSDVFKQFPDIFKIKLICSYGFDGTTGHSAYKQKFETEALGTPISDQSLFVTSVIPIQIIDSFN
CC   RHIWINRAPQSIRFSRPLKIELIKETAVHIMMEKNQLDNQINNLTPFTYKCDETRDIEVTYEMH
CC   MTLIDGKVLNVLTDTKSTQCCPICGVSPTQMLKITNFSSETFAPKVKALQFGVSPLHAWIRFFE
CC   FVLNVSYRDKRIKPR
CC   This protein is 43% identical with TRANSIB3p (42% identity with
CC   TRANSIB1p, the last protein is not complete).
CC   There is only partial ~60% nucleotide identity between TRANSIB2
CC   and TRANSIB1 or TRANSIB3.
XX
SQ   Sequence 2820 BP; 1016 A; 485 C; 491 G; 826 T; 2 other;
     cantgcacta tggtccagaa ttcgtttttt tttggcataa agtctaaatt tttatgtcaa        60
     tatatcgtcc tttagcaatt attttctaat agaaaattga tcatataaat aaaaaccaaa       120
     aacaaaattg accgaaagct tcactaaatc gttttatgag cttttaaagg tgaagtgtta       180
     aacagctgat tgagagaatg caattcccgc caaattattt gcttactttt gcacgtggta       240
     cgatcgttaa tacgcatcca taaattatag taaaatatgg aaaataaatg ccaaggtatg       300
     ttgtttttaa cgtatgtagt taatatatgt gtagttgtac tgtttttgtg ttgtgtaaca       360
     tccaatttat gtgtatttta acagaaaatt ctaacgtgtc ccctgtgttt cgtggagtat       420
     aactaatttt ctgacaattt ctcacaaatg ttaaaaacgt ccgtttttat ctttaactat       480
     tgtctttgac ggtaaagtaa tatcttttgc ccatttttgc tcgttttcct aaaatttgat       540
     tttatatagg caagttcgag ttcagacata gcgacctcct gtacatttgg aggcgtaaca       600
     atcggcaagt aagttatgtt tcagattaca tttcttctgc aatcaacaac aataatctgg       660
     aatcgaaaaa gacagaagag attgacaaaa aaatagtaaa ttttgaatta ttcattaaaa       720
     gaaaactgcc cgagtgtaac agacaactag accgatttat ttccaaacat actaagtgga       780
     tggcgtctaa gataacaatt cttgttagtg attttgaaaa ctccaagaca ccacagcaaa       840
     tgggacgccg aaacttatct taccaaaatg caggagaaag attaaaaagg aaactggcat       900
     ccaatctggc aagtgaaagt gatcacgaca caagtctttt gattcatgca gcaactgttt       960
     ctgctagaaa agaatgcaag agggacgttg cctttgttct taaagaaact ttaaaaacac      1020
     cagaatttcc aagcgaatcg aggatgcaaa ttcaatggca aaaaccaact cctctttcac      1080
     cagatgaagc tctagcttat ctcctggaaa acacgctgac aaaacagcaa tatataagca      1140
     ccaggctttt aaataaaagc cataacagcg acatatatcc gccctataat gaagtgatcg      1200
     aagcaaaatt acagtgccga ccagagggta tagaagtaat ggaaaacact gctcaagtgc      1260
     tattacaaaa tctcttggat catacagcgc aaagattaat taagttgcaa tctgatgttt      1320
     tcaagcaatt tccagatata tttaaaatca aattaatttg cagctacgga tttgatggga      1380
     caactggtca tagtgcttac aagcagaaat ttgaaactga agcacttggc acaccaattt      1440
     ctgatcaatc tttatttgta acttctgtca tacccataca aattatagat tcgtttaatc      1500
     ggcatatctg gataaacaga gcaccgcagt ccattcgatt ttccaggcct ctaaaaattg      1560
     agttgataaa ggaaactgct gtccacataa tgatggaaaa aaatcagtta gataatcaaa      1620
     ttaataatct tacgccattc acttataaat gtgatgaaac tcgtgacata gaagttacct      1680
     atgaaatgca catgacactt atagatggaa aagtcctaaa cgtattaaca gacactaaat      1740
     ctactcaatg ttgtccgatc tgtggagtca gcccaacaca aatgttgaaa attacaaatt      1800
     ttagttcaga aacctttgca ccaaaagtaa aagctttaca attcggggta agtccattac      1860
     atgcttggat ccggtttttt gaatttgttt taaacgtatc ataccgagat aaacgtatca      1920
     agccgagata aaaaagtggc atactaaagg agaggacaag gttaaaataa gtattcgaaa      1980
     aaaatatatc caggaggaaa tgtggagaga aatgggcctt cgagtaagca tgccgaagca      2040
     gaatggcagc ggcaatagca atgatggtaa tacggcaaga agagatttcg caagtaccaa      2100
     attctcgtcg ataaccagct tcaacgaaaa tcttttggaa aagtttcaca ttattttaat      2160
     agcaatatcg tccaactatt ttataaattc cgacaaattt cgttcttttt gcgatataac      2220
     ttttcaatta tatatccgaa catatcaatg gtatccctat gtcatcaagc ccggaataaa      2280
     ctttacaaaa gggaccgact atcacatgca aggaaaaata gtcggatcaa tacgatgagt      2340
     gatattttcc acagagcgat tgattcctcg gacccactat tatcaacaat ttgtttaaaa      2400
     gaaagagaga gaaaaaatag gaaaaaacca cttccgaagg cagtaataag tcttttggaa      2460
     atacagtcta attttaaacc tgatccatca gacaaaatat tggattcaca ttctgattct      2520
     gattcgagtt cagattcgga aatttataat gttgaactag aagaagaaga gggcgattat      2580
     ttttaaaaca acaatataca cacttttatt taaaaaaaaa aaaaaacaat gaaatttcgt      2640
     tgactcctga gtcataccag tagttaatat gggaggcaag agagggcgtg gtcgcacaga      2700
     cttcaaattt tgtgtgcaaa ctatttgtgg tttaacaaca aaatgtacaa agtttcaagt      2760
     ctgtagctca atttttagac tttatgccaa aaaaatcgaa ttctggacca cagtgcantg      2820
//
ID   LDRP3       repbase;    DNA;    INV; 217 BP.
XX
AC   L42475;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   Leishmania donovani DNA repeat.
XX
KW   Repetitive element; LDRP3.
XX
OS   Leishmania donovani
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-217
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42475; Positions       1     217.
XX
SQ   Sequence 217 BP; 54 A; 69 C; 66 G; 28 T; 0 other;
     gcaagaatca agaggcggtg tcacagagat gggcgaaggg ggacggcggg agcgggagag        60
     agagcgcggg cacacggcga cgtccgtgga aagaaaaaag gcagaagaca acgcgtattc       120
     ccttctgcta atgtgtaccc gcctctctgc cacagatcac gaggccagct ccactccact       180
     ctaacgcctc ccccgcgcag ccctgtcaca cgctccc                                217
//
ID   ULYSS       repbase;    DNA;    INV; 10653 BP.
XX
AC   S37633; X56645;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.virilis Ulysses retrotransposon.
XX
KW   LTR; retrotransposon; reverse transcriptase; transposable element;
KW   ULYSS.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-10653
RA   Bishop G.J.;
RT   "Direct Submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (19-NOV-1990). Bishop
RL   J.G., The Johns Hopkins University, Department of Biology, 34th
RL   and Charles Streets, Baltimore, MD 21218 USA.
XX
RN   [2]
RP   1-10653
RA   Scheinker S.V., Lozovskaya R.E., Bishop G.J., Corces G.V.,
RA   Evgen'ev B.M.;
RT   "A long terminal repeat-containing retrotransposon is mobilized
RT   during hybrid dysgenesis in Drosophila virilis.";
RL   Proc. Natl. Acad. Sci. U.S.A 87(24), 9615-9619 (1990).
XX
RN   [3]
RP   1-10653
RA   Evgen'ev B.M., Corces G.V., Lankenau H.D.;
RT   "Ulysses transposable element of Drosophila shows high structural
RT   similarities to functional domains of retroviruses.";
RL   J. Mol. Biol 225(3), 917-924 (1992).
XX
DR   GenBank; X56645; Positions       1   10653.
XX
SQ   Sequence 10653 BP; 2889 A; 2390 C; 2887 G; 2487 T; 0 other;
     tgttgcattt gacgttatcg gcagcaccga gggttactca gttggttgcg tgcgatatta        60
     tgggccactg ccgatatctt tttggcatat ggtcggagta tgccgggtga agctgggccc       120
     acggcggacg caaaattttg aagggtggca acgccagaca tgcgatccac ggcgccaaaa       180
     gcgacgattg ctattggccg cccgtttcgc tcttaaaggg aatacgagga gagtggatcg       240
     catgcccttg gatatgccct tggccttcat ttgggccgtt gacccaaaaa aatgcagctg       300
     tgcagatgag cagcaacggt gcccgcctcg caaatgtatg cgtgtgccga aattcggcac       360
     cgatggtgtg gctgaaaaaa aatgtcgagg agttcgattt gttcagcggt taacggcggg       420
     cgtgccagct cgaagtgagc aaaaaagttg gacattgcat ttctgcttga cagagtaaaa       480
     ttttttccct tctgaaaaat taagccggca cataatacca atggcttaac agacgaataa       540
     aagttttgtt tttgtgttct ttgccatgta ataaatttat ataaatcaaa ccgctcgaat       600
     cacaaagaaa atataataaa aaaattgaaa gagacttaaa aatttaagtt gcgacgagag       660
     acgaaccaaa taagccaaaa attaacggct ccggcaccaa ggagaccggc tcgcgcacca       720
     gagaggccca cgaaatattc aaggccagga ttcagtgcag cggcgcaaac cagccatatc       780
     cgcgacgtcc gccagcaagc gtcggcgcaa acgtgaaggc gacgagacga gccaccaacg       840
     accgggctcc aacaacgaag aagtcggtcc acaggcgtag accccggtcc cacatccacc       900
     gtagtgagtc cgttccattg ttctggccca tccctcggtt cgagcccctg gcatgagttc       960
     agaagaattg actcctaatt gcactccctg aaaaggagta gatttttttt tatcgttaaa      1020
     tttggttaat ttgtatttat aaaatatatt catacataca taggcactta cgccgagctt      1080
     cactttagag tgcgagcggt gaggaaaact ccaacggtga tgcatctgcg cctgtaaaat      1140
     aaaaaaaaaa aaaaaatcta aaattaactc ttgcgcgaac tatgctcaca tacttaccta      1200
     atttgaattt acgcatttat atcgcccctt accacccccc agagagctct ttaggtaggg      1260
     taaggtagaa ttaagcgatt taatacatac aatacacaat acgtgacata cccagtttta      1320
     agtaattgtg cgggccattg ttcctaaatc ggggcaacga ttgcctctaa agtgcctcat      1380
     tgcgcgtttc ttttgcggcg actagccaat atccttgtag tgtttcgtcg cctgttccgt      1440
     tcagtgttgt aaaaaaaaaa aaaaaaaatt aattctataa gataagagaa aaatttagga      1500
     attaatgcgc tgtgtcaatt agtataagta tatgcagcag taatacgcac ctgtgaagtt      1560
     aatgaattat ccgcttgcat gagatcctga acagctgcaa gataaatgcc ataagcaatg      1620
     attatgattg ttatacattt taagaaaacg caaccaatta tacgcaccta ttgaaagaaa      1680
     tcatgtccgg ctaaaataat attgctgggg agagtgggca ttatggccga cacgggctaa      1740
     tataggccat ttggtggcca aaatgaggga gacgagtgga ggtgatcgtc tcatggtagg      1800
     gcgggtacgc tgggtccgga accggggccc gatctggaag agtaaggtgg ataaatagtg      1860
     tttttttttg ttaatttata ttgagtgtct tacctttgtt gtttacattt tcatagttgt      1920
     tacagctgtg gattttgttc atgagttagt agttccgaat atttgttatc gattatgcgg      1980
     ttcattttga gtagtgttgt gtgagtctat tttgctacag acgtgtagct ttgttgttat      2040
     cgattgtgcg gactgcgggc cagggatggg accacaccca gagaatccga tgagccagcc      2100
     ggcgcggccc actgagaaac aagcagttcc ctaacaatat ggcgcccaaa ttgaagaagc      2160
     actcggcttc tttgaagtcg gtgtgtaatc aaagaaaaat aaatacgata aaaatgaagg      2220
     tacagaggaa aggactccct tggcttcagg accccacacc gctgaagtct tatgtcggca      2280
     gagtaggtag ctcataatgc gcacggtgta gtggaatccg agaagcacga cggaagtaga      2340
     ggttatctga atatccatcc ataagcatga ggggtttttt ttgtagtggt tgatggccgt      2400
     tcgcatgttg gcgaaacatt tgcgactatc catcgttcgc ctggtggtag ccgcaacgac      2460
     aaaggcatct catggttaaa aaaatgtgat attagggtag tttagtcaga tgttatttat      2520
     tcaattagtt gtttttgtct cattttgtgt taatgttgat gtatgctggc cgtagttata      2580
     cgagcttcgg agaccggttg acccagacga tatagagccg agcctgcgcc gcatctgtca      2640
     cacagcatat cccaagaatg gccagaagag cgacggagaa cggatcttgc catggtgtcc      2700
     attgacatgg ggtgttttct tgtcgcggtt gatgactggt aagtcacgtt tgctagttgg      2760
     tgaacgttcg cgaccgtcaa tcgtagcctg gtggtagccg ccatgacaaa ataacctgtg      2820
     aacgaaatgt gatattaggg taggtctgac tagagtttgt ttaatgtttt caatttgttt      2880
     tgtcccactc tgtgttaacg tttggtgtgt gctggccgta gttaaatgag cttcggaggc      2940
     aggtgaccca ggacgatata gagccgatcc tggcgccgca cctgtcacgc agcatactct      3000
     aagggtgcac agaagtgcga cagaaaccaa tagccttcaa ggtagcgttc cttgcatgcc      3060
     gtccgtcagt caaactgacg aactgagcat gggacgaatg ccttaagtgt tgtccactgt      3120
     ccagattatg cgtagattat ttagcctgtg ttaggatttg tcgtctctcc ccaagtattt      3180
     gaaattaatt agaaagaaaa caaaattttt gtgaagtggt ttttgtggat caatgtgtat      3240
     taatttatta ttctttatta gtaagatttg ttagtgggat gtttatttat ttattaattt      3300
     attagaaata ttagtaaagt ttttataagg gttgtacgcc ttgtagaaga tagggggtac      3360
     tgttctcaga aggaataagt atggctgaga aacaggtgtc tgattgggct tctgacgact      3420
     gatggggcgt cgctctgcca ccgccgagcc cagctggagg gctggtgcga acgccaatga      3480
     atttccgggg agtttaatga gagagacaga tccctgtaaa ggagggtcac ctggtagact      3540
     tggaggaaag aattggcgca acagcctaga cctccacgga acctggagtt cccaaaagcc      3600
     ccgaaagact cagtgctcaa atccggcggc aaacgcggcg atcgctcagg cccaccaaag      3660
     gatatctgca tgctctgcca tctggcatca gcgagtccat ccgcgaggag atgcgagctg      3720
     gcttcatgga aatgatgaag ggcatccatt gatgtgctta ggccgccagg gagccaaacc      3780
     cgccgaaact aacactgcgc cgaagccgcc aaggacatgt cgagccggga ccgcgaacag      3840
     gcgccatccc gaaagaacgg aagtgttcca gcgcgagcat tccaccaccg tgccaccgaa      3900
     gccacgtagg caagcgcaca gggcggagta ttcgtccagc agcccagttt acgtggcaga      3960
     tgctcagtcg aggaactggc gtaacccgaa taaccgccat ttccgagtag aggaccggag      4020
     agcggatgat tttcaaccgg aggaggcgta cgccaacgtg cgagaaactg cgtacatgaa      4080
     gctcgagcgg tggaacgtca agtttgacgg cgaggacgcg atgaattcgg tcgaggactt      4140
     cgtgttccgc ctagagttcc tgcagaggca gtatcagtgc ccgtggaagg aggtcctgcg      4200
     cggtttccac ctgctcctga ccggccgcgc ccgcgagtgg tactggatgc acgtgcggca      4260
     ttctagggtc gacagctgga tgcaactgcg gcatgccctc ttggacaggt tccggggcta      4320
     ccagacggaa cacgaggtaa tgcaggagct tctacaacga gagcaacagg ccagcgaagg      4380
     ggtggatgat tatatccacc acatgcgtca actcgccgcg cgattccaga agccgctgag      4440
     agaccgagag ctggtgagga ttataaagcg tggtttaaaa gaaagtctgg cgaaatatat      4500
     ttatgccatg gacgtactca ccgtggatga gctgcgccaa gagtgcctag aagtggagag      4560
     gcacatgggt cgcagaagcc ggactgggta ccttcagccg tcgcgttgtc cacaaggaac      4620
     gaggcccgta gtccacgagg ttgaagttcc accgcatctt acagaaacgc caccgggaga      4680
     actggaggag gcattcgtgc gaacgaggaa ctcatccgaa ttgtatgctg gaactcgaga      4740
     cagttcgacc acgtctttag agactgcctg tccaaggagc ggaaaatatt ctgctatagg      4800
     tgtggaaagc cggacacgtt ctgctcgcag tgtgaaaact gtccgggaaa ccccagaggg      4860
     agcgcggtga tggcgggaca gacgcgttcc gggacggcga ccgcgggaaa gcaggagagg      4920
     ggcacctacc agagccaata atcattggaa aggagacgga gatttggaat aaggatcagg      4980
     ataaggctaa ttataataat agtataagca aaggaggaac acttaggggc ttaccatacg      5040
     aagaacgtgt tcgggcatac atgtcggccc gaaatagaat ttttggtgag cgacagctgg      5100
     aggggatgac gctagccacc cggagaatgg tgaaggcacg tgcgcgcttc cgcagacgca      5160
     ggattaccag gcgccaggtc gtcgaagcgg tgagacggga ggagagtata gacccacgag      5220
     tattcgccga agtggaggtc gctggagcca aaatgaaagg gttgctggac acgggggcct      5280
     cagtcagtct gttgggacaa ggatgccggg agttagtgga gaaactggga tgggaagcgc      5340
     ggccatacga atcgatggtg aggacagcat gcatgggtgc caatcgccca attttaggtc      5400
     gcgttgttct gcctgtgaaa tacggaatag aacggttaga tatcgtattt tacatgtgcc      5460
     cggacctgcg acaggaacta tacctgggaa tcgacttctg gcgagccttt gagatcgcac      5520
     cagagctgct cggtccggcc agaaagtccg aaacaccacc agaggcatct gaggtaacgg      5580
     tagcgaaccc agaggtggct tattaccggg acgacgacga ctgcgtaacg gatccggaaa      5640
     tgtgggacct ggacaacgat cagaggagtc agttggaaag cgtgaagcgc agatttctcc      5700
     aatttgagaa ggatggccta gggaaaactc acctgctgca gcaccgaatt cagctgatcg      5760
     agggagcaga acccgtgaaa gacagactta atccgctgtc cccggccaaa caggagatcg      5820
     tgtgggccga ggtggataag atgctaaagt tgggcatcat cgaggagagt gacagcccct      5880
     ggagcaaccg gacgacggtg gtgatgaggc ctgggaagaa caggttttgc ttagacgcca      5940
     ggaaattaaa cagtgtaacg gtaaaagacg cgtacccgct tccatgcatc gagggcatcc      6000
     tatcgcgatc gacgagactc attttatctc tagcgtcgac cttaagttcg cgttctggca      6060
     atagagatgg aggagaagag cagggcgtat acggcgttta ctgtaccagg aggccgctgt      6120
     accagttccg ccacatgcca ttcgggctct gcaacgccgc tcaacacttc gaggctcatg      6180
     acaaggtaat cccggcgaat ctgaggtcca acgtattcgt atacctggac gacttgctga      6240
     taatatcggc agattttcca acgcacttaa aatacttgga attggtggcc gagtgtctga      6300
     ggaacgcgaa cctcaccata ggcatggcga agtcgaaatt cctgttccgc aacctaaact      6360
     acctgggttt cattcaatta aggcggcgga cgtggcgcat ggatccggga agggtagaag      6420
     cgatccggaa catcccgaat ccgaggacgg tcaaggaact acgaagcttc ttaggtacgg      6480
     cggggtggta ccgccgattc ataaagaatt tcgctgagat atcggtaccg ttgactgatg      6540
     cccttaagaa gagaacgggt agatttgtgt tgagcgacga ggccatagaa gccatagaga      6600
     gcttaaagtt agccctcacc acagccccgg tgttagttca cgcagatttt cgaagaccat      6660
     tcttcatcca atgcgacgca tctcactacg gagtaggagc tgtgttgttc cagctagacg      6720
     acgaacaaca ggaaaggccg atcgcattct tctcggccaa actcaacaag caccagatca      6780
     actattcggt gaccgagaag gaatgcctag ccgccaaact ggccatacat cgattccggc      6840
     cgtacgtgga gatgatgccg ttcacggtaa tcaccgatca tgcgagtctg cagtggctta      6900
     tgagtctcaa agacttgagc gggagattag ccaggtggtc cctcgaactg caagcgttcc      6960
     ctttctccat gcagtaccgc aagggagccg acaacgtgtg cagacacatt gtccgaagcg      7020
     tggaagaggt cgaactgacc ccggaagatc tgttgggatt tcagaccccg gagttcgaga      7080
     gtccgaatat cgaggagctg ataagagagg tgatgagcca acaagggaag tttccggacc      7140
     ttagcagtgg caggacggac ttctcttcaa gagggaccgt gcacgagagc ttggaggatg      7200
     aggtcgaagg cacaagttgg aagctctggg tgccggagtc gctgacggca ggactcatcc      7260
     aacaagcgac acggcggacg agacgctcag ctcatggagg catgaggaaa acgctgcacg      7320
     cgctggccag gcaatattat tggcccaaca tggccataca agtcagggac tatgttcgga      7380
     aatgcgatac atgcaaggag accaaggcac agaactaccg aatgcaggtc ggaattgggg      7440
     aagaagtgcg caccgaccgc cccttccaga agctatatat cgacttcttg gggaagtatc      7500
     cacggtcgaa acgagggcat gcgtggatat tcgtcgtcgt agaccacttc tcgaagttta      7560
     ccttcctgaa ggccatgagg gaagccaccg cggcggatgt cgtgaacttc ctagtgcatg      7620
     aggtgttctt caaatttggc gtgccggaag tgatccattc ggataatgga cgacaattcg      7680
     tgtcaaagtc gttcgatgcg atggtccagg cgtttggcat tactcacctg cgcacaccag      7740
     tgtattcgcc tcagagcaac gccgccgaac gcgtgaaccg cacagtgctg tcggcaatcc      7800
     gaacctacct gggtcaggat catcgggaat gggacgcgta cctaccagag gtggaagtgg      7860
     cgatccggaa tgcggtccac agcggctacg ggagtcactc cgttcttcgc ggtctttgga      7920
     cagcagatgt acctgaatgg ttccagttac aaactggcca ggaagctgta gatcattggc      7980
     cgaccacagt atttctgacc ttgacgcaaa ggacagactg gctgtaatcc gaagccaagt      8040
     caaggaccac ctgcacaccg catacgagcg aagtcgccaa cggtacgacc accgcgcgcc      8100
     gacagctcca tctggaaccg ggacaggaag tgtggaggcg caacttcgca ctaagcagct      8160
     tcggcaaagc cttcaatgcc aagttcgccc ggaagttctt gaagagccgc gtcgtccgag      8220
     ccgtgggaac caacgcctac gagttggaag atctccaggg acgcgtgcta ggcgtcttcc      8280
     acgcaaaaga tatacgaaca taatcgtaat ttgctcacct ccttgccagg caacggcggc      8340
     ggcagcgcca gtccccccct ttttttttgg gtcagcaaaa aaaaaaaaat atagattact      8400
     tgtcgtgggt gtggcctacg ttgggcatcg ttattagccg gctgggtcaa tccatgaaat      8460
     gcgcacgcag attccttgta actgtccttc atgtcgttac aataatctgc gtggtgatgt      8520
     tgcatttgac gttatcggca gcaccgaggg ttactcagtt ggttgcgtgc gatattatgg      8580
     gccactgccg atatcttttt ggcatatggt cggagtatgc cgggtgaagc tgggcccacg      8640
     gcggacgcaa aattttgaag ggtggcaacg ccagacatgc gatccacggc gccaaaagcg      8700
     acgattgcta ttggccgccc gtttcgctct taaagggaat acgaggagag tggatcgcat      8760
     gcccttggat atgcccttgg ccttcatttg ggccgttgac ccaaaaaaat gcagctgtgc      8820
     agatgagcag caacggtgcc cgcctcgcaa atgtatgcgt gtgccgaaat tcggcaccga      8880
     tggtgtggct gaaaaaaaat gtcgaggagt tcgatttgtt cagcggttaa cggcgggcgt      8940
     gccagctcga agtgagcaaa aaagttggac attgcatttc tgcttgacag agtaaaattt      9000
     tttcccttct gaaaaattaa gccggcacat aataccaatg gcttaacaga cgaataaaag      9060
     ttttgttttt gtgttctttg ccatgtaata aatttatata aatcaaaccg ctcgaatcac      9120
     aaagaaaata taataaaaaa attgaaagag acttaaaaat ttaagttgcg acgagagacg      9180
     aaccaaataa gccaaaaatt aacggctccg gcaccaagga gaccggctcg cgcaccagag      9240
     aggcccacga aatattcaag gccaggattc agtgcagcgg cgcaaaccag ccatatccgc      9300
     gacgtccgcc agcaagcgtc ggcgcaaacg tgaaggcgac gagacgagcc accaacgacc      9360
     gggctccaac aacgaagaag tcggtccaca ggcgtagacc ccggtcccac atccaccgta      9420
     gtgagtccgt tccattgttc tggcccatcc ctcggttcga gcccctggca tgagttcaga      9480
     agaattgact cctaattgca ctccctgaaa aggagtagat ttttttttat cgttaaattt      9540
     ggttaatttg tatttataaa atatattcat acatacatag gcacttacgc cgagcttcac      9600
     tttagagtgc gagcggtgag gaaaactcca acggtgatgc atctgcgcct gtaaaatata      9660
     aaaaaaaaaa aaaatctaaa attaactctt gcgcgaacta tgctcacata cttacctaat      9720
     ttgaatttac gcatttatat cgccccttac caccccccag agagctcttt aggtagggta      9780
     aggtagaatt aagcgattta atacatacaa tacacaatac gtgacatacc cagttttaag      9840
     taattgtgcg ggccattgtt cctaaatcgg ggcaacgatt gcctctaaag tgcctcattg      9900
     cgcgtttctt ttgcggcgac tagccaatat ccttgtagtg tttcgtcgcc tgttccgttc      9960
     agtgttgtaa aaaaaaaaaa aaaaaattaa ttctataaga taagagaaaa atttaggaat     10020
     taatgcgctg tgtcaattag tataagtata tgcagcagta atacgcacct gtgaagttaa     10080
     tgaattatcc gcttgcatga gatcctaaac agctgcaaga taaatgccat aagcaatgat     10140
     tatgattgtt atacatttta agaaaacgca accaattata cgcacctatt gaaagaaatc     10200
     atgtccggct aaaataatat tgctggggag agtgggcatt atggccgaca cgggctaata     10260
     taggccattt ggtggccaaa atgagggaga cgagtggagg tgatcgtctc atggtagggc     10320
     gggtacgctg ggtccggaac cggggcccga tctggaagag taaggtggat aaatagtgtt     10380
     tttttttgtt aatttatatt gagtgtctta cctttgttgt ttacattttc atagttgtta     10440
     cagctgtgga ttttgttcat gagttagtag ttccgaatat ttgttatcga ttatgcggtt     10500
     cattttgagt agtgttgtgt gagtctattt tgctacagac gtgtagcttt gttgttatcg     10560
     attgtgcgga ctgcgggcca gggatgggac cacacccaga gaatccgatg agccagccgg     10620
     cgcggccact gagaaacaag cagttcccta aca                                  10653
//
ID   HELICOPY4   repbase;    DNA;    INV; 1857 BP.
XX
AC   .
XX
DT   22-DEC-2000 (Rel. 4.2, Created)
DT   22-DEC-2000 (Rel. 4.2, Last updated, Version 1)
XX
DE   HELICOPY4 is a non-autonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HELITRON superfamily; CERP1;
KW   HELICOPY4.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1686-1465
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226, 159-168 (1992).
XX
RN   [2]
RP   1-1857
RA   V V., Jurka J.;
RT   "HELICOPY4.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
CC   [2] (Consensus)
XX
CC   There are about 100 copies of HELICOPY4 in the C.elegans genome.
CC   They are ~97% identical to the consensus sequence.
CC   This family is a non-autonomous HELICOP/HELITRON-like DNA
CC   transposon.
CC   210-bp 5'-termini of HELICOPY4 and HELICOP2 are 92% identical.
CC   40-bp 3'-termini of these elements are 90% identical.
CC   CERP1, a satellite-like repeat identified previosly [1] is a
CC   portion of HELICOPY4 (position 1686-1465).
XX
SQ   Sequence 1857 BP; 599 A; 266 C; 430 G; 562 T; 0 other;
     atcattactt atatataaaa aaataattcc gtttgttcca tagtttgtag tctatgtagt        60
     ctttgtagtc tgtgacgtca cacccaaagt cactgagaat tgtgggcggg gtctgtcatc       120
     cttcgtggtg agacccatcg tggcgagacc catcgtggtg agacccatcg tggcgagacc       180
     catcgtggtg agacccatcg tggcgagacc cgtcgtggcg agacccatcg tggtgagacc       240
     catcgtggtg agacccatcg tggcgagacc catcgtggtg agacccatcg tggtgagacc       300
     catcgtggtg agacccaccg tggtgagacc cgtcgtggta agacccaaaa ttttggcggg       360
     aaatttaaat tttctgtgaa aaatattttg gcgggaaatt taaattttct gtgaaaaata       420
     ttttggcggg aaatttaaat tttctgtgaa aaatattttg gcgggaaatt taaattttct       480
     gagaaaaata ttttggcggg aaatttaaat tttctgtgaa aaatattttg gcgggaaatt       540
     taaattttct gtgaaaaata ttttggcggg aaatttaaat tttctgagaa aaatattttg       600
     gcgggaaatt taaattttct gtgaaaaata tttttgcggg aaatttaaat tttctgaaaa       660
     ttctaaaatt ctggaaatct agaatcttct ggaaatttcg aaaaaactag aaaaattggg       720
     aaaagtctgg aatgttccag aactttctag aaaaatcgag aaaattctgg aatgttccag       780
     aactttctag aaaaatcgag aaaattctgg aatgttccag aactttctag aaaaatcgag       840
     aaaattctgg aatgttccag aactttctag aaaaattggg aaaattctgg aatgttccag       900
     aactttctag aaaaatcggg aaaattctgg aatgttccag aactttctag aaaaattggg       960
     aaatttctgg aatgttccag aactttctag aaaaatcgag aaaattctgg aatgttccag      1020
     aactttctag aaaaatcggg aaaattctgg aatgttccag aactttctag aaaaatcggg      1080
     aaaattctgg aatgttccag aactttctag aaaaattggg aaaattctgg aatgttccag      1140
     aactttctag aaaaattggg aaaagtctgg aatgttccag aactttctag aaaaatcggg      1200
     aaaagtctgg aatgttccag aactttctag aaaaatcgag aaaattctgg aatgttccag      1260
     aactttctag aaaaatcgag aaaattctgg aatgttccag aactttctag aaaaatcgag      1320
     aaaattctgg aatgttccag aactttctag aaaaatcgag aaaattctgg aatgttccag      1380
     aactttctag aaaaatcgag aaaattctgg aatgttccga aaaattgagc ttagagcttt      1440
     agaagaggta gttatttggg agttgatggg ggatcaagtc aaggtactgt agtggtacta      1500
     taggggtact gtaggtatac ggtagggtta ctgtagtttt ggaaaaattg gcatttcgtc      1560
     ctttgaagag gtattgggtt aggagtcggt ggaggataat gtcaaggtac tgtagtggta      1620
     ttgtaaggtt actgtcttgg tcaaaaagta acagaaagtt ttcatactgt ctgtgaattt      1680
     ttgaaacatg catgtcgtag aaaaatacat acatgtaaca gtgccagtaa accgcgtttt      1740
     aagtgtttca agtttttttc atgatgagaa attttttgag tgattgaagg tatgtgtgtc      1800
     aaatactttt aatggtgcca gtcgttgccc gcgccgtagg cgcggtcagc ggctggt         1857
//
ID   Saci-3_INT  repbase;    DNA;    INV; 4861 BP.
XX
AC   BK004070;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Schistosoma mansoni Saci-3 LTR retrotransposon: internal
DE   sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Saci-3_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004070; Positions     108    4968.
XX
CC   Key Location/Qualifiers
CC   CDS 176..1042
CC   /codon_start=1
CC   /product="gag protein"
CC   /protein_id="DAA04501.1"
CC   /db_xref="GI:44829174"
CC   /translation="MVDNDKNNINMIDSEIQVISFRPVPFIPHDPEVWFAALESQFEI
CC   RRITNQRQKYAYALESLPGDHLTAVREVVLNPNVPNVYDRLKDAILRHFLPSREERLR
CC   TLLARHPMGDAKPSHHLTRLQSLAGNMTADSEIVKELWFEALPVSIQPTLTALLEDTP
CC   LNKVALIADKILARVNTKGDHLVASFSRSNVDLDARRPPAHGDRDRCIHTRLSFRDRA
CC   NVPAPYVPRPRSQSRKAVTTRPKRASSKPRQKAVSEASPGWCWFHRAFGAGARHCRAP
CC   CSYKAGNFSAGE"
CC   CDS 793..4293
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04500.1"
CC   /db_xref="GI:44829173"
CC   /translation="MYPYSSQFPRPRKCASPLRPPTQVTISKSRNDSPQAGIFQATPE
CC   GGFGSESRLVLVSPCFRSRCPSLSSSLLIQGGKLLSRRVNAAVLAGTSPQVGRLFYVH
CC   DYRTNARYLVDTGAQVSVVPIGNSKSQATMLRLRAANGSVIPTYGTRQLTVNLSNRRQ
CC   YLWTFIIADVPTAILGIDFLQHYELLVDSRRLQLIDTSSNSNFMGSKAHTNAYRITGV
CC   FHSRDDLFHVLFQKFPKLTKPLEETPSVTNRVVHHIVTRGPPVTARPRRLAPDKLAFA
CC   KREFDNLLATGIIRPSHSPWASPLHMVRKKDGVSWRPCGDYRALNTATRFDSYPIPHI
CC   HDITASLKGTTIFSKIDLVRAYHQIPVALEDIEKTAITTPFGLFEFLRMPFGLRNAAQ
CC   TFQRFIDSIVRDLDFVHVYIDDLLIASSNVDEHYQHMTLLFQRLSDNGIIVNPDKCEL
CC   GKKEMKFLGHVIKHEGILPCEDKVRTIMEYTVPSTLKELKAFLGLVNFYRRFISHAAE
CC   QLRPLTDLLRGNPRKLEWNDAARTAFSDIKTALAQATLLVHPDPSATLSIAVDASDFA
CC   IGAVMQQNISGSWQPLEFFSRRLTPTETRYSAFGRELLAAYCAIKHFRHAVEGRKFIL
CC   FTDHKPLTYALHTKSDRYSPRECRHLDYISQFTTDLRHVKGESNCVADALSRIQLNAV
CC   TLPVLDLPAMAAAQANDTSCTEAQQSTSLQCREVPLATSSGTILCDTSTGLPRPIVPS
CC   AYRRLVFDALHGLSHPGIAATLRLIAARYVWPSMNKDVRMWVKQCLQCQRSKVHRHVA
CC   APIGTFATPDARFDHVHIDIVGPLPPSHGYDHILTCIDRFTRWPEAIPITSITAETVA
CC   HRFVERWIAMYGCPSTVTTDRGQQFESALFSSLTRLLGTERIRTTAYHPASNGLVERF
CC   HRQLKSALRAHENNNWYETLPLVLLGIRTSLKADIQCSAAELVYGTTLRLPGEFFTPR
CC   SSTKFGESDYVQRLSAFMRTLTPVSTRIQHRQVALPRELSTCSHVFIRVDSVRKPLQQ
CC   PYEGPFHVISRHEKTFKVDRRGRIETVSIDRLKPAHVDDSAIPDKPRPNVRPIRASSG
CC   ISTSTSDPTLDAPKTSFSRPSQQHVSSAPSTDETSVSRPDLQTTPPLTADEIAGSRCS
CC   NETTVSRSGRRVRLPVRFLD"
CC   CDS 4205..4903
CC   /codon_start=1
CC   /product="ORF3"
CC   /protein_id="DAA04502.1"
CC   /db_xref="GI:44829175"
CC   /translation="MRLQAHDVRTRLPSHVPVAEYAYPYAFSTNLITNYGYSIGIYPY
CC   TTRKLHFSLFLSCFFVYPEPTPLTIAVLVSSTLVNLGESWPDHPRYSQRTQSISLTPN
CC   TYDIHLVPNMVILVASGSLAQSGFVLRLQRFWSGPLRTQPSDSGYKPLWCSMLIQAIN
CC   TARSFWYRSTSKTFGGNSRINDHSLFCQRFRPTIARFAISPTNETATYRKCKSFLAGG
CC   SCSDRPVSIRTRLE".
XX
SQ   Sequence 4861 BP; 1226 A; 1377 C; 1015 G; 1243 T; 0 other;
     ctggtgagcc gtatttggaa cacgcaatac agctggtaac ccaatccatc gagcacaagt        60
     caaacttggc caattctcca aaccagatca atccggtgag tctatttatc tatccacatc       120
     tgttgcatat attcgtattg atatttttca atatataata ttttggcaac ttaatatggt       180
     agataacgat aagaataaca taaatatgat agactccgag atacaggtta tcagttttcg       240
     accggttcct ttcatccctc atgatccaga agtctggttc gcggcactgg aatctcaatt       300
     tgagatccgc cgcataacca atcaaaggca gaagtacgcc tacgctttgg aatcattgcc       360
     cggggatcac ctaaccgctg tccgtgaggt tgtcctcaat cccaacgttc caaacgttta       420
     tgaccgtctt aaggatgcca tccttcgaca tttcctccca tcaagagagg aacgattgag       480
     gacactttta gcacgtcacc ctatgggtga tgctaagccg agccaccacc tcacgcgcct       540
     gcaatccctt gcaggaaaca tgacagctga ctctgagata gtcaaagagt tgtggttcga       600
     agccttacca gttagtatcc agccaaccct tacggctctg ctcgaggaca ccccgctcaa       660
     caaggtggcc ctcatagcag ataagattct ggcacgagtt aacaccaaag gcgaccattt       720
     agttgctagt ttttcccgtt ctaacgttga tctcgatgct agacgacctc cggctcatgg       780
     ggatagggac agatgtatcc atactcgtct cagtttccga gaccgcgcaa atgtgccagc       840
     cccctacgtc ccccgaccca ggtcacaatc tcgaaaagcc gtaacgactc gccccaagcg       900
     ggcatcttcc aagccacgcc agaaggcggt ttcggaagcg agtccaggtt ggtgctggtt       960
     tcaccgtgct ttcggagccg gtgcccgtca ttgtcgagct ccctgctcat acaaggcggg      1020
     aaacttctca gccggcgagt gaatgcggcc gtactcgccg gcacttcacc tcaggttggc      1080
     cgtttatttt acgtgcacga ttatcgcacc aacgctaggt accttgtgga tacgggtgcc      1140
     caagtttctg tcgtacctat cggtaacagt aagtctcaag ccactatgct tcgactacgc      1200
     gctgcgaatg gctcagtcat tcccacctat ggtacacgac aacttacggt caacctgagc      1260
     aaccgacgac agtatctgtg gacgttcatc attgccgatg ttcccacagc tatactcggt      1320
     atcgatttcc tacagcacta tgaattgcta gtcgattcac gtaggctgca gctaattgat      1380
     acttcgtcga acagcaactt tatgggctct aaagcccaca caaacgcgta ccgaatcaca      1440
     ggtgtatttc attcgcgtga cgatttattc cacgttttat ttcagaaatt ccccaaatta      1500
     actaaacctc tcgaggagac tccatcggtg accaatcgtg tggtacacca catagtcacc      1560
     cgcggaccac cagtcacggc aagacctcgc cgactggcac cggacaaatt agctttcgct      1620
     aaacgtgagt ttgacaattt actagctact ggtattattc gtccttctca cagtccttgg      1680
     gcctcacctc tccacatggt tcgaaaaaag gatggggtta gttggagacc atgcggagac      1740
     taccgagcgt taaacacagc tacacgtttc gatagctatc ccatccccca catacatgac      1800
     atcacggcat cactcaaggg cacgacaatt ttttccaaga tcgatctggt acgagcatat      1860
     caccagatcc cagtcgctct tgaagatata gagaaaactg ctatcacgac tcctttcggt      1920
     ttatttgagt tcctacgaat gccatttgga ttacggaatg ctgctcaaac tttccaaagg      1980
     tttatcgata gcattgtacg agacctagat tttgttcacg tctatattga tgacctgcta      2040
     atcgcatcat caaacgtaga tgaacattat caacacatga cgctactatt ccagcgcctt      2100
     tcggataatg gaataatagt caaccccgat aagtgtgaac tcgggaagaa ggaaatgaaa      2160
     ttcttaggtc atgttattaa gcatgagggt attctacctt gtgaggataa agtacgtact      2220
     ataatggagt acactgtacc gtccacactc aaggaactga aggcatttct cggtttggtc      2280
     aacttctacc gacgcttcat ttcgcacgcg gcagaacagt tacgaccgtt aaccgattta      2340
     cttcgcggta atccacgcaa actggaatgg aacgacgccg cacgtactgc attttcagat      2400
     atcaaaacgg ccctagctca agccacactt ctcgtgcatc ctgacccatc ggccacgctt      2460
     agtatagcgg ttgatgcatc ggatttcgcc ataggagccg ttatgcaaca gaatatctcc      2520
     ggtagttggc agcccctcga atttttctca cgacgcctca ctcccacgga gacgagatat      2580
     agcgcttttg gtcgcgaact gctagcagcc tactgcgcca tcaaacattt ccggcacgct      2640
     gtagaaggtc gtaagttcat cttattcacc gaccataagc ccttaacgta tgctctgcat      2700
     accaagtctg accgctactc accacgagag tgcagacatt tggactatat ctcccagttc      2760
     acgacagacc ttcgtcacgt caaaggcgag tcgaactgtg ttgctgatgc tttatcacgt      2820
     atccaactga atgcagttac tttgccagtg ctcgatctac ctgctatggc cgccgcccaa      2880
     gcaaacgata cttcatgcac ggaagcacaa cagtctacgt cccttcaatg ccgggaagta      2940
     cccctagcta ctagctctgg tactatccta tgcgatactt ccacgggcct ccctcgaccc      3000
     atcgtaccct ccgcttatcg ccgtctcgtc tttgatgccc ttcatggtct atctcatcct      3060
     ggtatcgcag ccaccctacg cctcatagct gcacgatacg tctggccgtc aatgaataaa      3120
     gatgtccgta tgtgggtaaa acaatgttta caatgtcaac gatcaaaagt gcacaggcac      3180
     gtagctgccc ctattggcac tttcgctacg cctgatgctc gcttcgatca cgttcacata      3240
     gacattgtag gaccattacc accatcgcac gggtatgatc acatactcac atgcattgat      3300
     cgtttcacaa gatggcccga agctattccc atcacgtcta ttacggcgga gacagttgct      3360
     caccgcttcg tagaacgatg gatagctatg tacggttgtc cctcgactgt cacgactgac      3420
     cgaggacaac aatttgagtc cgcattattc tcctcactaa cacggctgct tggtacggaa      3480
     cgcatacgca ctaccgccta ccatccagca tcaaacggtt tagttgaacg gtttcatcgc      3540
     caacttaaaa gtgctcttcg agcacacgaa aacaacaatt ggtacgaaac ccttccgctc      3600
     gtcctcctgg gaatcagaac gagtctaaag gcagatattc aatgttccgc cgctgaactt      3660
     gtttacggca cgacattgcg tctgcctggg gaatttttca caccacggag cagcactaag      3720
     ttcggcgaat cagactacgt ccaacgactg tctgcattca tgcgaacact gactccggtg      3780
     tcaactcgta tacaacatcg acaggtcgct ctccctcgag agttatctac ctgttcacat      3840
     gttttcatac gagtagattc ggtacgcaaa cctctacaac agccttacga aggacctttt      3900
     cacgtgattt cccgtcacga aaagaccttc aaggttgatc gacgtggccg catcgaaaca      3960
     gtcagcattg atcgtctcaa gccagcacac gtcgatgaca gtgctatacc tgataagccg      4020
     agacccaatg ttagacccat cagagcttct agcgggattt ctacatctac ttcggatccc      4080
     acgctagatg cacctaagac ctcattctca cgtcccagtc aacagcacgt gtcatctgcc      4140
     ccgtctacgg acgagacttc cgtctcacgt ccagacctgc agaccacacc gcccttgact      4200
     gcggatgaga ttgcaggctc acgatgttcg aacgagacta ccgtctcacg ttccggtcgc      4260
     cgagtacgct tacccgtacg ctttctcgac taacctcata accaactacg gatacagtat      4320
     aggaatctac ccctatacta cacgaaagct acacttttct ctttttcttt catgtttttt      4380
     tgtttacccc gagcctacgc ctctgaccat cgctgttctg gtatcgtcga ctttagtcaa      4440
     tcttggcgaa agctggcctg atcacccacg ctatagtcaa cgcactcagt cgatctctct      4500
     gactccaaat acgtatgata tacatttggt cccgaacatg gttatcctgg tcgcatctgg      4560
     ttccttggct caatctggtt tcgtcctacg tctgcagcgt ttctggtccg gacctctacg      4620
     aacgcaacct tcagattctg gatacaaacc actctggtgt agcatgctaa tccaagcaat      4680
     caatacggca cgttccttct ggtaccgttc tacgtcaaag acttttggtg gcaactcgag      4740
     gatcaacgat cactccctgt tctgccaacg ttttcgtcct acaattgcac gtttcgcgat      4800
     cagtcccacg aatgaaaccg ctacgtatcg aaagtgtaaa tcctttctag cggggggctc      4860
     c                                                                      4861
//
ID   CELE42      repbase;    DNA;    INV; 220 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans CELE42 repetitive element (a consensus).
XX
KW   MITE; CELE42.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-220
RA   Belknap R.W.;
RT   "CELE42.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RP   1-220
RA   Jurka J.;
RT   "CELE42.";
RL   Direct Submission to Repbase Update (AUG-1999);.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 220 BP; 78 A; 51 C; 35 G; 54 T; 2 other;
     tcgtggtact ccacacggac aaatacattt agttttacaa ctaaaaacga gccgcgacgc        60
     gacacgcaac gcgccgtaaa tctaccccag atatggccga sccaaaatgg cctagttcgg       120
     caaactcttc catttcaatt tatgagggaa gccagaaatc cgtgaaatat ttagcaaaaa       180
     attcaaattt tttcagatat ttacatttaa atayccaaaa                             220
//
ID   HELICOP2    repbase;    DNA;    INV; 5516 BP.
XX
AC   AC006730;
XX
DT   23-MAY-2000 (Rel. 4, Created)
DT   23-MAY-2000 (Rel. 4, Last updated, Version 1)
XX
DE   HELICOP2 is a DNA transposon.
XX
KW   DNA transposon; helicase; HELICOP superfamily; HELICOP2.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5516
RA   Kapitonov V.V., Jurka J.;
RT   "HELICOP2.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
DR   GenBank; AC006730; Positions   23892   18377.
XX
CC   HELICOP2 is a DNA transposon; it encodes a DNA helicase-like
CC   904-aa protein which is putatively involved in proliferation
CC   of HELICOP2 copies. There are about 100 nonautonomous elements
CC   in the genome, and they are 96% identical to HELICOP2.
CC   On average; these elements are 500-1500 bp long. In several
CC   cases, HELICOP2 forms 7-9kb satellite-like clusters composed
CC   from a ~200bp portion of HELICOP2.
CC   The HELICOP1 protein is encoded by 7 putative exons and its
CC   CDS is defined as:
CC   1834-1922; 1973-2235; 2431-2988, 3112-3296, 3657-3970, 4021-4294;
CC   4343-5374 .
CC   The HELICOP2 protein sequence:
CC   MNEFSQKTDFPSTSDSQEPVSKRTRSRFKSDSSGAERKRKQRGKESSEEREARHQYDQDR
CC   KRKKKASESKDELKVLLLKDRERKARERREAKGISDGPNYLGPMSKTCDHCKAVFFESKN
CC   FQSNIRQFNSAFSMASMGAHLDIPKGHGPYCYRIHGQVYHLAGPLHPEPGGRPSYGQIYI
CC   LDTAQAIEERLGNPANSKCDPQLMAELTKLISTRNPYAKAYKMMAEVEEKENTDALKEGR
CC   VAEEVRLIFDISTTKDRRCYNVPVSNEVAVVFVGEDQDIPASRSLAIHPRGGGLTAIRDI
CC   DKISVKYLFKYVYKGHDRAALNIIRSRLKEGIVDEIKAHLDARYVCAPEAIHHLFGFKIE
CC   RKSDTDIRTVIDDDGVPVVYPTFVEAAKARGLLKDDSEYLKSLKEWIGCSVPAALRSLFS
CC   SILLFNEVHEPQVLWDTVKRDLSEDYRHAGARDDEAEALAYFDISSRLHRGGKAFNDYVP
CC   EPSMHPTDIYLNTSDPSQCAAEGVRLFQTLNSDQKYVFERIVGALHDPTLPRLFFLDGPG
CC   GSGKTYLYIALYNMIIGENKMAACTAWTGIAAHLLPGGRTMVSLLKLNIHDRCESSLHRR
CC   QLKDARELANTDVFICDEASMIPKTALNTFDSLLRDITQVDQPFGGKIVILGGDFRQILP
CC   IVEKGSRADQVDACIKSSPLWNQFETLRLHSNMRVTTNDTEWMNFLLGVGDGSLNDSESK
CC   VQIPFSLCDGNIVEKVFGDVIDPSTSDPCENVILTPKNVDVTLLNEDVHSRGIGEERIYL
CC   SRDEIVTDDPADHMHYPTEFLNKMTPSTLPPHVLKLKKGSVVMLLRNLDVSGGLCNGSRF
CC   VVESLGRRTIGCRFACGERKGKFVIIPRIECYHDKNLSFKLKRTQFPVRAPDGRITNIVF
CC   TEIL.
XX
SQ   Sequence 5516 BP; 1654 A; 939 C; 1195 G; 1728 T; 0 other;
     atcatttact atatataaag cgcgtgtcct tccgtccgtt tgtagtttgt agtttgatct        60
     ttgatctttc aactctcttt tctgtagttg gaaaaggtat tgggttaaga gttgccgggg       120
     gataatgtca aggtactgta gtagtactgt aggagtactg taggtatacg gtagggttac       180
     tgtagattag gaaaaattga gtttttgtct acagaagagg tattgggttg ggagttggtg       240
     agggataatg tcaaggtact gtagtagtac tgtaggagta ctgtaggtat acggtagggt       300
     tactgtagtt taggaaaagt tgagttttcg tctacagaag aggtattggg ttgggagttg       360
     gtgagggata atttcaaggt actgtagtgg tactgtagga gtactgtagg tatacggtag       420
     ggttactgta gttaggaaaa gttgagtttt cgtctacaga agaggtattg ggttgggagt       480
     tggtgaggga taatttcaag gtactgtagt ggtactgtag gagtactgta ggtatacggt       540
     agggttactg tagttaggaa aaatttgaat tttaaccatt tgaagagata ttgggttggg       600
     agttggtgga ggataatgtc aaggtactgt aatggtattg ttggagtact gtaggagtac       660
     ggtagggtta ctgtagttat gaaaaatgtg aattttaacc atttgaagag atattgggtt       720
     gggagttggt ggaggataat gtcaaggtac tgtaatggta ttgttggagt actgtaggag       780
     tacggtaggg ttactgtagt tatgaaaaat gtgaatttta accatttgaa gagatattgg       840
     gttgggagtt ggtggaggat aatgtcaaag tactgtaatg gtactgtagg agtactgtag       900
     gattatggta gggttactgt agtcaggaaa aaatttgaat tttaactcaa gaagggtccc       960
     attggccccg cccccttggt tttaaatttt tttgaaaaca ttttggtggg aattcaaatt      1020
     tcacttttat aaaaacattt tgacgggaat tcaaatttta attttttgaa aacattttgg      1080
     cggtaattca aattttaatt ctttgaaaac attttggagg aaaattgatg gaaattttct      1140
     taacttctaa aagttaagaa attgtttaaa gttgagaaac gtctgaaacc ttctgaaatc      1200
     cactgaatgc aatgtcctag aaaattttgt taagttcatg agacttcaaa ttaaaaaaaa      1260
     attcgaacga caaaatgcct cattgggtgg agtaattttg tcgactccag cctctctctg      1320
     cagcatttca ggatgttcta tatttatttt agtaaattag attgttttgt tgaccggaat      1380
     gtcaaaaact tttctaaata cataatttga ctgtattttt ttaacacact ctacgaaatt      1440
     tataatttgt ttttctgttt tcgttattta ctgtacatta attacgaaat tcaagatttg      1500
     tttttatgtt tttgttgttt actgtattag tgaactgttg tttacagtag tgtttacagt      1560
     attttttgtt tactgtacat taattacaaa atttaaaatt tgtttctctg ttttaggttg      1620
     tgttttttga aaaaaaatgg tattatactt ttttgccgaa ctacagtttt caattatcta      1680
     tagtacgatt ttggttatta caaaaaaaaa tcttcccctg ttttatctgt tctatcgaaa      1740
     aaaaatttct tttctcttca ttttttcgtt tttttttaaa ttattgtttg tgatagtcaa      1800
     tattttacag aggaatccga agaattatta actatgaacg aattctcaca aaaaactgat      1860
     ttcccttcaa catctgattc ccaagagcct gtttcaaaaa ggacacgttc tagatttaaa      1920
     aggtaagttt ttattttcta agtttatttg ttagtaaaat aaatgttttt agtgatagtt      1980
     ctggagctga acgcaaaagg aaacagcgtg gaaaagagtc atcagaagaa agagaagcac      2040
     gccatcaata cgatcaggat aggaaacgta aaaaaaaagc ttctgagtcc aaagacgaac      2100
     tgaaagtgtt gctactgaaa gatagagaac gtaaagcaag agaaagaaga gaagcaaaag      2160
     gtatatccga tggacccaac tatcttggcc cgatgagcaa gacatgtgat cactgtaaag      2220
     ccgtcttttt cgaaagtaag tttttaaata atatttttac aaatgaacgt tgaattttac      2280
     catgcagcaa atttaatttc agatgaagta agcggctcca ctgatcatat caacatgtgt      2340
     tgcaattttg gactgacaac ctccatcgat gataagttcg ccgactatcc cgatcgattg      2400
     aaggatcttc ttctcggaga ttcgattgag gcaaaaactt ccaatcaaat attcggcaat      2460
     tcaactctgc tttttccatg gcttcaatgg gtgcccatct cgatattcca aaaggacatg      2520
     gtccatattg ctaccgcatc cacggccaag tgtatcactt agcagggcct cttcatccag      2580
     aacctggagg aagaccatca tacggccaaa tttatattct ggacacagct caagctatcg      2640
     aagaaagatt aggaaatcct gcaaattcaa aatgtgatcc gcagttgatg gcagagctca      2700
     cgaaactcat ttcgactagg aacccatacg ctaaagctta taaaatgatg gcagaggtgg      2760
     aagagaaaga aaacaccgat gctctgaaag aaggaagagt tgccgaggag gttcgactaa      2820
     tcttcgacat ttcaactact aaagatcgtc gttgttacaa tgtccccgta tcaaatgaag      2880
     tggcagttgt atttgtcgga gaagatcagg atattccagc ttcaagatct ctagctattc      2940
     atccaagagg aggaggtctc actgcaattc gtgatattga taagatatgt gatccattga      3000
     catatccata aggtcataag atggataaca gattcatcgt tccgtataac tcttactttc      3060
     tgcttcggta caatgctcac atcaacgtcg aaatttgtgc tttcattgaa gctgtgaagt      3120
     acttatttaa gtacgtgtac aagggacatg atcgtgctgc tctaaacatc attcggagta      3180
     gactgaaaga aggaatcgtt gatgagatta aagcccacct tgatgctcga tacgtgtgtg      3240
     ctccggaggc catccaccat ctcttcggat ttaagattga gagaaagtct gacacggtat      3300
     atcgactagc tgtccatctt ccgggttttc aagttgtggt atttccttca aatgtaacaa      3360
     aggatcagtt gcagtctacg cctgaaaaag atacaactct gacagcttgg ttcaaaatta      3420
     acaaaattag cgaagaaaca gtgcagagtg gttccatgtc cgattcattt gtcgacgaat      3480
     tgcattacat tgacatgcca tcttaattca cattcgatca aaaagagcgc tgctggaaaa      3540
     cccgaaagcg tggaatccga caaattggca gaatgtacac agttgctccc agtgaaactg      3600
     aacgttatgt tcttcgcatt cttctactaa acacaaaagg agctacttct tttgaggata      3660
     ttcgaactgt catagatgat gatggagtgc ctgtagttta ccccactttc gttgaagcag      3720
     ctaaggcacg tggactgctg aaggatgata gtgaatattt aaaatcgctg aaagagtgga      3780
     ttggatgctc ggttcctgct gccctacgat ctttgttcag ttctattcta ctcttcaatg      3840
     aggttcacga gcctcaggta ttgtgggata ccgtaaaacg cgatctcagt gaggattatc      3900
     gtcacgcagg agccagagat gatgaagctg aagctttggc ctattttgat atttccagtc      3960
     gacttcacag gtagctatca tctctaaact tatatttata gtggaaatat atgttttcag      4020
     aggaggcaaa gctttcaatg attacgttcc tgagccttca atgcatccga ctgacatcta      4080
     tctaaataca agcgatccat cccaatgtgc agcagagggc gttcgactat ttcaaaccct      4140
     caactcggac cagaaatacg tcttcgagcg tatcgtggga gcgctacacg accctacttt      4200
     accccgtctc ttctttttgg atggtcccgg aggaagtggt aaaacatatc tgtacattgc      4260
     attgtacaat atgataattg gagaaaataa aatggtaact atcaactaat tcatttttat      4320
     tcctaacatg tttttattcc aggcggcttg cacagcatgg actggaatcg cggcacattt      4380
     acttccagga ggtcgaacta tggtgtctct tctcaaattg aacattcatg atcgatgtga      4440
     gtcgtcgctt caccgaaggc aattgaaaga tgccagagaa cttgctaata ccgatgtgtt      4500
     catttgtgac gaggcttcga tgattccaaa aacagctctc aacacgtttg attctcttct      4560
     tcgggatatc actcaagtcg atcaaccatt tggaggaaaa atagtcattt tgggcggaga      4620
     tttccgacaa atccttccca ttgtcgaaaa agggtcgaga gctgatcaag tcgatgcctg      4680
     tatcaagagt tcgcctctgt ggaatcagtt tgagactcta cgcctccact caaacatgag      4740
     agttaccaca aacgacacgg aatggatgaa ctttcttctc ggtgttggcg atggttccct      4800
     aaatgattct gaatcgaaag ttcaaatccc tttttcttta tgtgatggaa atattgtcga      4860
     gaaagttttt ggagatgtaa tcgacccatc aacttctgat ccctgcgaaa atgtgattct      4920
     tactccaaaa aacgttgatg tcacccttct caacgaagat gttcattcca gagggatagg      4980
     agaagaaaga atctatttat caagagatga aattgtaaca gatgatccag cagatcacat      5040
     gcactaccca acagaatttc tgaacaagat gaccccttcg actctccccc cacatgtgct      5100
     gaaactgaaa aagggatcgg tggttatgct gctcagaaac cttgatgtat cgggaggtct      5160
     ctgcaatgga tctcgctttg tggtggaatc cttaggacga cgaacaattg gatgccgatt      5220
     tgcatgtggc gaaagaaaag gaaaatttgt aatcatccct cgaatcgaat gttatcatga      5280
     taagaatttg tctttcaaac tgaaacgaac tcaattccct gttcgagccc ctgacggccg      5340
     aatcacaaat attgttttta ccgaaattct ttaaacgaat gttttagaaa ccttgatttg      5400
     atttaataaa aattatttaa aaaaaatttt tttcaaaatt tttcacttcc ttatttttaa      5460
     aataaaattt caaacgacca gtcgcggccg cgccggaggc gcggtcagcg gctggt          5516
//
ID   HAT2_CE     repbase;    DNA;    INV; 564 BP.
XX
AC   .
XX
DT   21-OCT-1999 (Rel. 4, Created)
DT   21-OCT-1999 (Rel. 4, Last updated, Version 1)
XX
DE   HAT2_CE nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HAT superfamily; TIRs; HAT2_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-564
RA   Kapitonov V.V., Jurka J.;
RT   "HAT2_CE.";
RL   Direct Submission to Repbase Update (OCT-1999).
XX
CC   [1] (Consensus)
XX
CC   HAT2_CE is a putative non-autonomous DNA transposon.
CC   It generates duplication of 8 bp-long target site upon
CC   integration in the genome. HAT2_CE has 17 bp-long
CC   perfect terminal inverted repeats.
CC   The length of the target site duplications indicates
CC   that transposase encoded by the autonomous HAT2_CE-like
CC   element is related to the HAT superfamily. HAT2_CE is about
CC   64% identical to the HAT1_CE consensus sequence and they
CC   share identical 13 bp-long termini.
CC   HAT2_CE individual copies are, on average, 98% identical
CC   to the consensus sequence.
CC   There are about 100 copies of HAT2_CE per haploid genome.
XX
SQ   Sequence 564 BP; 165 A; 113 C; 119 G; 167 T; 0 other;
     caggggtgtg cggataaccg attttttcgg ctaacggata aatcggctaa tgccgatttt        60
     ttgagaaccg gctaacggct aattcggcta acggctaatt tcaaaatttt cggctaacgg       120
     ctaattcggc taatctcagt cattcaaatc ggctaatttt cggctaattc ggctaattcg       180
     gaaaatattc atttggttaa gctttttttg tccattctgt taattcaggt tttgggttaa       240
     ttttttcact gttattgagc aaattcaggg atgaacgact gttcaaatag gaaaaaatca       300
     tacaaattca ccacattttg ttttccaaaa aaatatgtta gttgaattag ccgaaatagc       360
     cgatcggcga attcggctaa catcggccaa aatcggctaa cggataacta cgtattagcc       420
     gaactgccaa aaagtcggct aacggctaat tcggctaatc ggtaaaaagg tcggctaacg       480
     gataattcgg ctaatattag ccgagttagc cgaattagcc gatcggcgaa ttcggctaaa       540
     tcggctatta tccgcacacc cctg                                              564
//
ID   Saci-1_INT  repbase;    DNA;    INV; 5980 BP.
XX
AC   BK004068;
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Schistosoma mansoni Saci-1 LTR retrotransposon mRNA, complete
DE   sequence.
XX
KW   LTR retrotransposon; Schistosoma mansoni; Saci-1.; Saci-1_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-5980
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RP   1-5980
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004068; Positions       1    5980.
XX
CC   Key Location/Qualifiers
CC   CDS 240..5282
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04498.1"
CC   /db_xref="GI:44829169"
CC   /translation="MPNNRAKKSIPKLIGEGEDKVNDKSLSTKQVFSDVFTPHGSNVF
CC   KESYSDSDSDVMLDKVADLSLDKGERLRHAVSGTTPKVPIVGLELPKVELCYFDGKPK
CC   GYWKFIKQYDTYVAARVSDDSQRLLYLLHYCKGKAKAAIEGCVMMEATSGYKRARDIL
CC   KRLFGQAHVIARETLEDLFNDVRRGCHDAEQLSSLAIKMENCSMILEQMNYTADLNSL
CC   VTLERVVRFLPQPMQRQWAEVVDSLTEEDREPTFAELTQFVAAKARVAASRFGQLAER
CC   PRGGVTTKSCYHSVVRPKNTPIASAKCSMCSGDHAVYECSQFLALTTEERLSHVKGKS
CC   ICFVCLKQGHKAIECKVTRRCAIDGCSGRHHSLLHKGSAKSKSEDRLATVNHCGHDRP
CC   VDGHVCLGMIPVRLRSGNAEVVGYALLDNGSDVTLIRSGCLKLLGLNEEQSSVVVQTV
CC   SGNKATRVIKTPFEVYSLDQTEHVKIQGALVVSQIPGHKPTKTIMSSLVKWPHLSDVP
CC   LEVIDSGEVVLLIGCDVPEAHWVLDQRLGGRKNPYAVKTLLGWTVFGPTSFSGLKKKV
CC   SNCMSKLQTLEDQFRKLYDVEFADVYSSDKSPSVEDRAAIEIVERGTFYDGGRFVVPI
CC   PWKMYPNKKTGNYEVAASRLLSLKRRLLKDSNLYTKYAKSIESNLAKGYAQRVPEIQL
CC   RSDYLPRWYLPHHAVINPKKPEKLRVVLDCAAKFAGVSLNDMIYQGPDTTAELVCILL
CC   RFRKEAIAICADVEEMFMQVKVPESDQGALRFLWWQETDMSKEPSEFQMTVHPFGATS
CC   SPFCANFALIKTAQTFSDGFDSYIVEAVKNNFYVDDCLVSFSTSNQAKNFVKQVSELL
CC   CKGGFALKKWITNSVEVRSVLHGVCKEGPVMEMSRDCDVIHRTLGVQWDCERDVFQFH
CC   FDAPERPLTRRGILSVASSLFDPLGLISPVCLTVKLLLQELCKSQIGWDQPINEPYTS
CC   IWLNWVNFMRQISHVKIPRGIKNKLDEPNARVELHLFSDASEIGYGAVAYARVSYLNE
CC   PPYCILLYSKSRVAPIKPVTVPRLEMAAAVLSVRLSEVLQRSLPNFFCEVNFHTDSMI
CC   VLYYIRNTGNRYSTYIANRLAILHQHTKVEQWTYVKSSENPADWTSRGIQKLADLESW
CC   IKCPTLQQAEFGKTITDCPQTIPDSIEFRKTAVVNLSKLNYDKFPIISYYSDWLRLVR
CC   AVAWLRRFIEYWMILHSSSLEGSVHLGCLKFEELESAKRKVLMIVQKEVYGRLLSEFK
CC   NNSNVNSQNDLKRLSPVMRDGLLCVGGRLNYSDYPDDFKYPVILPSRHLVTEMIVRHY
CC   HKEEGHSGTSQVLAAIRKYYWIVKGTSTVRRVIGKCVICRRYTTNSGQQLMAPLPACR
CC   VKPGWHSFSIVGVDYFGPILVKRGRSLEKRYGCIFTCLQTRAVHIELAYSLNTDSFVM
CC   ALLRFIGRRGKPSEIYSDNGSNFVGAISELRKYVRQWDQQRISNELSAKQIQWHFNPP
CC   SSSHRGGVWERMIRSVRRLLLLITREQTLNDETLGTYLVEIERILNDRPLTPIVQDAN
CC   DKLALTPNSLLLLRECDSIVDESSIRVNYDKRWKQVNYLANVFWKRWLREYIPSLQAR
CC   QKWLVERRNFQPGDVVIVVSDIFTRGKWPLGVIESCETDKDGKVRTVSVRTNNGSIRR
CC   DIRKVCLLEGSN".
XX
SQ   Sequence 5980 BP; 1748 A; 1032 C; 1469 G; 1731 T; 0 other;
     catcgtgtca aatatatacc ttgttttgat ttgaactgag acacgagtgt ctaaagctat        60
     ctaacggtta ttcgaccaca tccagaccta ttggaattta ggtttggatc ttacagttct       120
     aaacgaatat tggtcggttg gcagcttggt ccgtgttcaa cagtcctgaa caaatattgg       180
     tcggtttgca gcttggtcct cgctcacagt tctgaaacaa atttggtcga taattcgaga       240
     tgcctaacaa tcgtgcaaag aagtcaatcc ctaagctgat cggagagggt gaagacaagg       300
     ttaacgacaa atcccttagt acaaagcaag ttttttctga tgtctttacg cctcatggtt       360
     ctaatgtatt taaagagagc tatagtgata gtgatagtga cgtaatgtta gataaggtag       420
     cggatcttag tttagataaa ggggaaagac ttaggcatgc agtctcgggc acaacaccta       480
     aggttcctat agttgggtta gagctaccga aagtcgaatt gtgttatttt gatggaaagc       540
     cgaagggata ttggaagttt ataaaacaat acgataccta cgttgcggca agagtatctg       600
     atgatagtca acgtttgctg tatttgctcc attattgcaa gggtaaggct aaagcagcca       660
     tcgaaggatg tgtaatgatg gaggccacgt ctgggtataa aagagctaga gatattttga       720
     aacgattatt cggtcaagct catgttatag caagagagac tttggaggat ttattcaatg       780
     atgtaaggcg tggttgtcat gacgccgagc aactctcaag tttagcaata aagatggaaa       840
     attgtagtat gattctagag caaatgaatt acactgccga cttgaattcg ctggttacgt       900
     tagagagagt agtaagattt ctgccccaac ctatgcaaag acaatgggcc gaagtggtag       960
     atagtttgac agaagaggac agggagccaa cgttcgccga actcactcag ttcgtagcag      1020
     ctaaagcgag agtagctgcg agtaggtttg gacaattggc tgagcgtcca agaggcggag      1080
     ttactactaa atcatgttat cattccgtag tgagaccgaa gaatacaccg atcgcaagtg      1140
     ctaagtgtag tatgtgctca ggcgatcacg ctgtttacga gtgtagtcag ttcttagctc      1200
     tcacgacaga agaacgtctg tcgcacgtca aaggtaagag tatctgtttc gtatgtctta      1260
     aacaagggca taaagctatt gaatgcaagg tgacgagacg ttgcgccatt gacggatgtt      1320
     ctgggagaca tcactctctg ttgcataagg gttcggcaaa gagtaaatca gaggatagac      1380
     tggctacggt gaaccattgt ggacatgata ggccagtgga cggtcacgtg tgtctgggaa      1440
     tgattcccgt gaggttgaga tcgggaaacg ctgaggttgt ggggtatgcc cttttggata      1500
     atggctctga cgtaaccttg atcaggtcag gatgtttgaa gttgttgggg ctaaacgagg      1560
     aacagtcgtc ggtggttgta caaaccgtga gcggcaataa ggcaacacga gtgataaaga      1620
     caccttttga ggtgtattcc ttagatcaaa ctgagcacgt taaaattcaa ggagccctgg      1680
     tagtgtcgca aatacctggg cataagccga cgaaaacaat catgagcagc ctagtgaagt      1740
     ggccgcattt gagcgatgta cctttagaag ttatagattc tggcgaagtt gtgttactga      1800
     ttggttgtga tgtcccggaa gcccactggg tactcgatca acggttaggt ggaagaaaaa      1860
     atccatatgc agtaaaaacg ttgctcgggt ggaccgtgtt tggacctaca tcattttcgg      1920
     gattgaagaa aaaagttagt aattgtatga gtaagctaca gacgttagaa gatcaattcc      1980
     gtaagcttta tgacgtagaa ttcgctgatg tatattcaag cgataaatcg ccgtcagtag      2040
     aggatcgagc agcaatagaa atagtggaaa ggggtacctt ctacgatggt ggtcgcttcg      2100
     tagttccaat accatggaaa atgtatccaa acaaaaaaac gggaaattat gaggtagcgg      2160
     ccagtagatt acttagtttg aagcgtaggt tgttgaagga tagcaaccta tacactaaat      2220
     atgctaaaag tattgaaagt aatcttgcta aaggatatgc acaaagggtc cctgaaatcc      2280
     agttaaggtc agattatctc cctcgctggt atctgcctca tcacgcggta ataaatccca      2340
     aaaagccaga gaaactgagg gtggtgctgg actgtgctgc taaattcgct ggggtttcac      2400
     tgaatgatat gatttatcaa ggtcctgaca ctaccgcgga gttagtttgt atattattgc      2460
     gattccgcaa ggaggcaatt gccatttgtg ccgacgttga agaaatgttc atgcaagtaa      2520
     aggtccctga atccgatcaa ggagccttac gattcctatg gtggcaagag acagacatgt      2580
     cgaaagaacc atcggagttt caaatgaccg tccatccatt cggagcaacg tcttcgccat      2640
     tctgtgcaaa ctttgccttg atcaagaccg ctcaaacatt ctccgatgga tttgatagct      2700
     acatagtaga ggcggttaag aacaatttct atgtggatga ctgcctagta tctttttcca      2760
     ctagtaatca agcaaaaaac tttgtcaagc aagtaagtga attactgtgt aaaggcggtt      2820
     ttgcattaaa gaagtggata acaaactcgg tagaagttag gtccgttttg catggggtat      2880
     gcaaggaagg gcctgtgatg gaaatgtcta gagattgtga tgtcattcat cgtaccttgg      2940
     gggtacaatg ggattgtgaa agagatgttt tccagtttca ctttgacgct ccagaaagac      3000
     cgttgactag gagaggtatt ctatctgtgg catcttcttt atttgaccct ttgggtctaa      3060
     tttctccagt ttgtctgacg gtcaaacttc tgctgcaaga gttatgtaag tcccaaatag      3120
     gctgggacca gccgatcaat gagccttata cgtcgatttg gctaaactgg gtgaacttta      3180
     tgcgacagat aagtcacgtt aaaatacctc gagggatcaa gaataaatta gatgaaccta      3240
     atgcacgggt ggaattgcat ttgtttagtg atgcctccga gattggttat ggagcagtag      3300
     cttatgcacg agtcagttat ttgaacgaac cgccgtattg tattttgttg tacagcaagt      3360
     ccagggtcgc acctataaaa ccagtcactg ttccgaggct tgagatggca gcagcagttt      3420
     taagcgtaag gctaagtgaa gtgctacaaa gaagcttacc caattttttc tgcgaagtaa      3480
     attttcatac tgattctatg atagtgttgt attatattag aaatacagga aaccgatata      3540
     gtacctatat tgctaatcgt cttgctatct tacatcagca cactaaggtt gagcaatgga      3600
     cttacgtcaa atcgtcggag aacccagcgg attggacttc gagaggtata caaaaattgg      3660
     ccgaccttga gtcgtggatt aagtgcccta ctttacagca agccgagttc ggtaaaacta      3720
     ttaccgattg tccacaaact attccggaca gtattgagtt cagaaagact gctgtggtta      3780
     atttgagtaa actgaattat gacaagttcc ctattatttc ttattactca gactggttaa      3840
     gattagtcag ggcagtagct tggctacgaa ggtttataga atattggatg atacttcatt      3900
     catcaagtct tgaaggatcc gttcatttgg gatgcctgaa gttcgaagag cttgaaagtg      3960
     ccaagcgtaa ggtcttaatg atagtccaga aagaggtata tgggagatta ctcagtgaat      4020
     ttaagaacaa cagtaatgtg aatagtcaga atgatctgaa gcgtttatcg cctgtaatgc      4080
     gcgacggttt actatgtgtt ggaggtcgtc taaactactc cgattaccct gatgacttca      4140
     agtatccagt aatattacct agtcgtcact tagtgacaga aatgatagtc agacattatc      4200
     ataaagaaga aggacactca ggaacttctc aagtacttgc cgcaatccga aaatactatt      4260
     ggatagtaaa agggaccagc acagtcagga gagtgatagg taagtgtgta atttgtcggc      4320
     ggtatacgac gaactcagga cagcaattga tggcaccgct tcccgcatgt agagtgaaac      4380
     caggctggca tagtttctca attgtagggg tggattactt cggacccatt ttagtaaaaa      4440
     ggggaagatc actagaaaag aggtatggtt gtatatttac ttgtttgcaa acacgtgcag      4500
     tgcatattga attggcttat agtttgaata ccgattcatt tgtgatggcc ctgttacgtt      4560
     ttattggaag aagagggaag ccctcagaga tatatagtga taacgggtcg aacttcgtgg      4620
     gtgcaatatc tgagctaagg aaatatgttc ggcagtggga ccaacaaagg ataagtaatg      4680
     aattgtcagc gaagcagatt cagtggcatt ttaaccctcc gtcatccagc cacagagggg      4740
     gtgtgtggga aagaatgata agatccgtac gtagactatt attattgatc accagagaac      4800
     aaacgttgaa tgatgaaact ttaggcacct atttggttga aattgaaagg atattgaacg      4860
     atcgaccctt aaccccgatt gtacaagatg ctaacgacaa gctagcatta acacctaaca      4920
     gtttgctttt gttgagggaa tgcgacagta tagttgacga aagtagtatc agagttaatt      4980
     atgataaacg ctggaaacag gtgaattatc tagctaacgt gttttggaaa aggtggctgc      5040
     gtgagtacat accatcctta caagctcgtc aaaaatggtt ggttgagcgt cgtaatttcc      5100
     agccaggtga tgtagtaatt gtggtttctg atattttcac ccgcggtaag tggcctctag      5160
     gggtaataga gagttgtgaa acagacaagg acggaaaggt taggacggtg tcagtacgta      5220
     ctaataacgg gtctattaga agggatatac gtaaggtatg tctcctagaa gggtccaatt      5280
     agttaattgt caaacaatgt agacagaacg agtaggcgta ctgttgtaag tcctacccgt      5340
     tcttttagtg aggaaagcga ttaggtgaac catggcaaaa aagacatcag aatagcttgt      5400
     gcagtatgga gggattttgg gggccggtgt tggatccatt ttgcaagtga aaatccctcc      5460
     atgcatacac ttgtgatttc ttccttacgt tttctttatt tgtatatgct gttaacattt      5520
     attatgctaa ttaagactgt aacgttcaat tttcttggtt ttactatcgt tttttattga      5580
     gtctccatgt tctttactga gctgtatata gtttgtttta attgctatta ttctggtatc      5640
     tgccatattg gctgctcgct ttttgattgt gcggtttgaa cttgactggg atcgtgcatt      5700
     tttggttgta tttggagcac ttttccagaa attgaaacac ttggtgttat aaaataaccg      5760
     ctcaaacgga atctcccttg atctatccag aaaggataga ataacgctta ttctttggtg      5820
     tttttggtaa tttttcatat gtttcttatc accttgctat ttatcgtaat ttagattgaa      5880
     tattttggta tcaattgttg gttgaataac tgggtgataa tattcgttta ggtaaatttg      5940
     tacatttgta tatataacga agtacagaac cgtgtctaat                            5980
//
ID   TGRP1       repbase;    DNA;    INV; 1032 BP.
XX
AC   M57919;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   T.gondii repeat region.
XX
KW   Repetitive sequence; TGRP1.
XX
OS   Toxoplasma gondii
OC   Eukaryota; Alveolata; Apicomplexa; Coccidia; Eimeriida;
OC   Sarcocystidae; Toxoplasma.
XX
RN   [1]
RP   1-1032
RA   Cristina N., Liaud F.M., Santoro F., Oury B., Ambroise-Thomas P.;
RT   "A family of repeated DNA sequences in Toxoplasma gondii:
RT   Cloning, sequence analysis and use in strains characterisation.";
RL   Exp. Parasitol0-0 (1990)In press.
XX
DR   GenBank; M57919; Positions       1    1032.
XX
SQ   Sequence 1032 BP; 247 A; 371 C; 227 G; 187 T; 0 other;
     gtcgacattc gtgccacagc gacgtcggac ctctggttgt cacctgcggc ggaacctaga        60
     catcgctaca ccgcccacac agcgcttccg acgcgagccg acaaaccctc aacacgtaac       120
     ctccatcacg tgtagtctct gcatggcctg acgtccgagt cgaaatacga gatcggcact       180
     ctcattctcg ctcactgtcg cttcctgtca acgagcagcc acgccggaaa accacctgcc       240
     aatccacaca gcgaagactt ctcacccggc cctctatcca ccacccccca cgacctcatc       300
     ccaccccgca acctgtggtg tcgccaaacg caacacgtcg gcagctcgtg ccaaagtgcc       360
     gaagacctct tggaggtggc cgctccgcaa actaaacatg gacatgccgc cggacagtgc       420
     ctccgctgcc acctaacaac acctcctcgc ggtcactcca tcagcagtcg cctcggtgca       480
     tcgtggtgcc gcagttgcct cgagacacag aaccacgccg cgagtccgtt tctcttctta       540
     cctccaggtt ctgaacagaa cgcccagcaa tctcgcagac agactgcaca acgacacaca       600
     accaataact tctcacccat ccgcgcaggt acgcgacgaa actcatacgg gaaaaaggca       660
     ggaccgtgtg gggctgccac acgccacaag cggcgtattc cgaaacgagt gaactcggat       720
     cgttcgcttc cgcaactgga ttggcccacg catcccacgc cggacactca ctctctgcag       780
     gattccgaca acacgtcatc gaggtgcggg aacaagttgt cctttctcca cggggtcgta       840
     ttcgcctctg aagataaaag atgctacatc gctctccctt atactccctt cctgtacacc       900
     gttgccacgg cgtgaaagca ctggacattg acacagcctg cagcaggcta tacagcgata       960
     atatcttaca acgcacccca gactgttaca acctcctgac atctgtggcg ccaccaaacg      1020
     caacacgtcg ac                                                          1032
//
ID   R2B_DM      repbase;    DNA;    INV; 3528 BP.
XX
AC   AF015685;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Drosophila mercatorum R2 retrotransposon reverse transcriptase
DE   domain protein gene, complete cds.
XX
KW   R2; Non-LTR Retrotransposon; Interspersed Repeat; R2B_DM.
XX
OS   Drosophila mercatorum
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3528
RA   Malik S.H., Burke D.W., Eickbush H.T.;
RT   "Complete R2 element from Drosophila mercatorum.";
RL   Unpublished.
XX
RN   [2]
RP   1-3528
RA   Malik S.H., Burke D.W., Eickbush H.T.;
RT   "R2B_DM.";
RL   Direct Submission to Repbase Update (23-JUL-1997)Biology,
RL   University of Rochester, Hutchison Hall, Rochester, NY 14627,
RL   USA.
XX
DR   GenBank; AF015685; Positions       1    3528.
XX
SQ   Sequence 3528 BP; 966 A; 823 C; 897 G; 842 T; 0 other;
     gcccagtgct ctgaatgtca aagtgaagaa attcaagtaa gcgcgggtca acggcgggag        60
     taactatgac tctcttaagg taagggagta aatgggtttc tggtttactt gtaaatcatt       120
     aatcaagtcg actcgtagac acactgtgtc ccacaaagtt gtcatgtggc ctcctcgtgg       180
     tgtctcccgg aagttatttg gctaggcgtt tcctggtcaa ataaactaat tcgagcggcg       240
     aactggtccc gttggttacc tgccctcagg gatcgaaaaa ctgatggtac aaatgttcaa       300
     taatgagcct cggatagctg aaaataactc agttgaatat actcctacgg ttactcgcct       360
     aggagaccat caggtacgga acgcagatgc taatttgcag actatgtttc cgtgcagaga       420
     atgtgaacga tctttcagaa cgaagatcgg cttgggtgtt cacatgagac atcgacacaa       480
     agacgaactg gatacagcgc gtcggcgtgt cgatgtcaaa gcacggtgga atgaggaaga       540
     actgtctatg atggcaagga aggaacttga gctcacagca aatggtgaga ggttcataaa       600
     taaaaaacta gcggagatct ttacaaaccg cagcgtcgat gctatcaaaa agtgtcgaca       660
     gagagataat tacaaggcga aaatcgagca gctacagggg caagcagctc ttatctcaga       720
     agcaaatgaa cctcctacca cacagcgccg ccctagttta agtgagctcg aggtaactcc       780
     ctcatcgtca cattcagttc caatcgctcc accaccgata cattcggatg atatcctctt       840
     gcaggagctt cagggcatgt cgcctgtcgc agtaagaaga tcttggagag tcgaggtctt       900
     gcaatctatc attgatagag cgcatatctc gggcaaagaa gcaactctcc agtgtttgtc       960
     taactatctc ttggaaatat ttccgaatcg aaacgaccgc cccagttccg cgacggtccc      1020
     cgcccggcgc cctcgcaata gaagaattag tagaaggcag cagtacgcca gatgcataaa      1080
     atccttgctt gatggaaccg acgagtcggc attgccaaac cagagtatta tggagcctta      1140
     ttggagacaa gtcatgacac agccgagccc cagcctttgc agcaacaccg ttccccgtaa      1200
     agggaacatg caagaggggg tatggtcacc gattacgtct agggacctac aagtgcataa      1260
     agtgccattg acttcgtcgc cagggcccga tggaattact tcacaaactg ccagaagtat      1320
     tcctatcgga ataatgcttc gcattgttaa cctaatactt tggtgcggag atttgcccgt      1380
     acccttccga atggctcgaa ccattttcat tccgaaaacg gtaagagcaa acagaccgca      1440
     agactttcgt ccgatatcgg ttccttcgat cgtggtgaga cagcttaatg ccatcttggc      1500
     atcccgacta acggccgccg ttagttggga tccgagacag cgaggctttc tacccacgga      1560
     cggatgcgct gataacgcga cgatagtcga cttagtcctg agggatcacc ataagcgtta      1620
     tgcgtcatgc tacattgcca cgctagatgt tagcaaggca tttgactctg tagctcatga      1680
     cgcggtattc aacaccgtaa ccgcttatgg tgccccaaag agcttcgtcg actacgtacg      1740
     tagatggtac agtggaggtg gcacctactt caatggtgga gattggaggt cagaggaatt      1800
     cgtccctgct agaggtgtta agcagggtga ccctctgtcc cccgtactgt tcaacttgat      1860
     catcgatcgg ttgctcaggt ctcttcccaa agacatcggt gtccatgtcg gaaatgctaa      1920
     agttaatgct tgtgcttttg cagatgattt gatgctgttt gcttccactc caaaggggct      1980
     tcaggaactc ttgaatacca cagtaaagtt tctatcttct gttgggctaa cccttaacgc      2040
     tgataaatgt ttcacgatca gtattaaggg gcaaccaaag caaaaggtta cggtggtcga      2100
     acaacgtacc ttttgtatag gtcgcgcacg tgtccagctg aagcgttcgg aggagtggaa      2160
     atatctcggc attcatttca ctgcagatgg gagggctcgt tacaatcctt cggaggacat      2220
     tggtccaaag ttggagagat taatgcagtc cccccttaaa ccacaacaga agttattcgc      2280
     cctcagaact gtcctggtgc ctcaactcta tcacaagctc acgcttggga gtgttgctct      2340
     aggcgttctg agaaagtgtg acaagctggt acgatcattc gctaggaagc tgctgggtct      2400
     tccgttggat gtgtcagttg cgttctacca tgcccctcac agttgtgggg gtctcggtat      2460
     accctcggta agatggatag ctccgatgtt gcgcactaaa agattggcag gaattaactg      2520
     gccccatctc gaacaatccg aggtggccag tgcctttctt agtgaggagc tccgacgggc      2580
     ccgggataga gcgaaggctg gagttaacga gctgctatca caaccaaaga ttgatacgta      2640
     ctgggcggat agattgtaca cgtctgttga tgggaatggt ctccgtgaag caaggcgcta      2700
     tgccccacag cacggatggg taagtcagcc cacgcgtctg atgagcggta aagcttatcg      2760
     gacagggatc caattacgca ttaacgccct ccccacgagg tctcggacca cgcggggaag      2820
     gcatgaaatg aatagacaat gtcgtgcagg atgtgatgct ccgagtcata atcacgtcct      2880
     gcaaagatgt catagaacac atgggagtcg agtgtcacgg cataatggag tggtttccta      2940
     tctcaagaag gggcttgaga caaggggcta caccgtctat tcagagcaga gccttcacgg      3000
     ccaaaatcgg gtatataaac ccgatatagt agcattccga catgacagca caatagtcgt      3060
     tgacgcgcag gtagtgacag acggactgga tcttgacaga gctcatcaga gcaaagtcga      3120
     gatctataac agacaggact tacttacgac attgcggtct gtatatcggg cacgtgagaa      3180
     catcgaggtt gtctccgcta cgctaaactg gaggggtatt tggagctttc aatccataac      3240
     aaggttgagg actctgggta tcctaacagc tggtgacagc aatgttatca gttccagggt      3300
     agtgtccggc cgagtctaca gctttaagac cttcatgttc catgcagggt ttcatagagg      3360
     aatggcttag cagctctgaa agcgtatcct acaaacgctg ctaacttgca caacatctta      3420
     aaaagttata aagaaagcac acgggtgtct tagcttatca gatatctctg gtatagcgag      3480
     tcatatagcg caacaaaaaa aaaaaaaaaa aaaaaaaaat agccaaat                   3528
//
ID   LARP2       repbase;    DNA;    INV; 217 BP.
XX
AC   L42499;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Leishmania archibaldi DNA repeat.
XX
KW   LARP2; Repetitive element.
XX
OS   Leishmania archibaldi
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-217
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42499; Positions       1     217.
XX
SQ   Sequence 217 BP; 54 A; 71 C; 66 G; 26 T; 0 other;
     gcaagaatca agaggcggtg tcacagagac gggcgaaggg ggacggcggg agcgggagag        60
     agagcgcggg cacacggcga cgtccgtgga aagaaaaaag gcagaagaca acgcgtattc       120
     ccttctgcta atgtgtaccc gcctctctgc cacagatcac gaggccagct ccactccacc       180
     ctaacgcctc ccccgcgcag ccctgtcaca cgctccc                                217
//
ID   CERP1A      repbase;    DNA;    INV; 454 BP.
XX
AC   M37219;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Nematode CeRep1.1 repeat DNA.
XX
KW   CeRep1 repetitive sequence; CERP1A.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-454
RA   Felsenstein M.K., Emmons W.S.;
RT   "Structure and evolution of a family of interspersed repetitive
RT   DNA sequences in Caenorhabditis elegans.";
RL   J. Mol. Evol 25, 230-240 (1987).
XX
DR   GenBank; M37219; Positions    1412     959.
XX
SQ   Sequence 454 BP; 142 A; 93 C; 79 G; 140 T; 0 other;
     cttccgattt taatccatta taacaaaatg ctgtttctca ggtggcgaaa aattttaatt        60
     ccgagggggt cattttcata ggggattttt tcgtaggaaa acgctttcgg tgggacaaaa       120
     tatacgacac gccttttcac agacccacca catgatcctt cacaatgcac cacacgactt       180
     tttgcaatac accgcacgct tcttcgtatt tatttattcc tttttccaac gtaccgaact       240
     tcgacacgaa ttcaatacaa aacgggtttt taatggaaat taattagttt tattcccgag       300
     ctaaatacgg atattttcag aattttccga tgacaaaaac gggtttttca atagattcga       360
     acgatccaaa atttaattat taacgaaaat gagcgttttc tttccggaaa aagaagaact       420
     gatgccgaga gtgatccaag tggagccaaa tgtc                                   454
//
ID   Merlin1_CI  repbase;    DNA;    INV; 1791 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 4.01, Created)
DT   16-JUN-2003 (Rel. 4.01, Last updated, Version 1)
XX
DE   DNA transposon Merlin1_CI - a consensus.
XX
KW   DNA transposon; Merlin/IS1016 superfamily; 9-bp TSD; Merlin1m_CI;
KW   Merlin1_CI.
XX
OS   Ciona intestinalis
OC   Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona;
OC   Phlebobranchia; Cionidae; Ciona.
XX
RN   [1]
RP   1-1791
RA   Feschotte C., Wessler R.S.;
RT   "Merlin1_CI, a family of Merlin/IS1016-like DNA transposons from
RT   the sea squirt Ciona intestinalis.";
RL   Repbase Reports 3(5), 93-93 (2003).
XX
CC   [1] (Consensus)
XX
CC   The Merlin1_CI family is one of the founding members of a new
CC   superfamily of eukaryotic DNA transposons related to the IS1016
CC   group of bacterial insertion sequences. There are at least 3
CC   copies
CC   of Merlin1_CI containing large ORFs in the C. intestinalis draft
CC   genome sequence (WGS assembly 1.0, 116.7 Mb). The sequence below
CC   is a consensus constructed from these 3 copies. Merlin1_CI has
CC   been
CC   recently active because the three copies are ~94-98% similar to
CC   the
CC   consensus. Merlin1_CI are related and have probably provided the
CC   transposase to a large family of nonautonomous elements
CC   (Merlin1m_CI,
CC   see description in RR). The Merlin1_CI consensus sequence is
CC   1791-bp
CC   long with 155-bp TIRs (8 mismatches). It contains one predicted
CC   gene
CC   (positions 518-1435), which can encode a 273-aa protein,
CC   Merlin1_CIp.
CC   The C-terminal half of this protein has strong similarity with
CC   the
CC   putative transposases of IS1016 from Haemophilus influenzae (and
CC   related IS) and with ORFs from a wide range of eukaryotes,
CC   including
CC   other ascidians (annotated transposase, GenBank AAM76104),
CC   nematodes,
CC   flat worms, mosquito (described previosly in the AF293351 GenBank
CC   locus
CC   as an IS1016-like insertion), zebrafish, Xenopus and humans. Many
CC   of
CC   these ORFs are clearly parts of transposable elements.
CC   Multiple alignments reveal that the most conserved domain
CC   of these proteins contains a putative DDE motif (D(60)D(36)E in
CC   Merlin1_CIp). A HTH DNA-binding domain is predicted in the
CC   N-terminal
CC   region of Merlin1_CIp. Thus, this protein is likely to represent
CC   the
CC   Merlin1_CI transposase. Merlin1_CI elements create a 9-bp TSD
CC   upon
CC   insertion, unlike most other members of the Merlin/IS1016, which
CC   create an 8-bp TSD. There may be other lineages of Merlin
CC   transposases
CC   in Ciona intestinalis.
CC   Putative Merlin1_CIp transposase:
CC   MQKDFEGENSESLPCIRCKSCGTYVSPRKNSFFAFMDNRNRANVKISYKQVMAILINWVQRVPVGTTQQ
CC   NYGFGAHTVTDWYNFCREMCMLGFSKREPMGGPNTIVEIDESLLRGKRKYNRAGIEGPWIFGMCHVTVD
CC   SEGARSTQEVRFFHVLRRDKQTLLPIIQNEVLPSTTIHSDQWAAYTGLDQLGYSHQSVNHSENFIDPQT
CC   GAHTQTIESTWHHMKTTLLRNMRGVEPELLDSYLAELWARKLYRDHAALLEKLFDWIVEAYPIRNI.
XX
SQ   Sequence 1791 BP; 504 A; 380 C; 393 G; 508 T; 6 other;
     ggtaatcctg ccgctggtga ccagtgaaaa ttttggtctc aaaatgttcc ttacgtctct        60
     ctgatactcg ctgtatatat ttaaaaaaaa caaactcggg cgttcgtatc gaaaattaac       120
     tttgaaaatc cgcgaaaaac tgctgcgtca ccgtactcgc ctgtgctgaa caaaatcaac       180
     gaatatatgg ttacattatg acgtcacata gtagttacgt caaaatgatg gaaaatccgt       240
     tctgttacgt cataatacaa ccctaaatat atataccggt ccacgtgttg cgaaactcct       300
     ttttttgctc aaaattttaa cttgtactct ataacgatgg cattttttcc acacatgcaa       360
     gccattattg cggatgcaga caaattacaa ggttacttac tagaaaaaaa tcttatacgg       420
     ggtccatctt cttttgatcg atgcccgaac cgaagttgtc gcaagagtat actcttgttt       480
     ggggtagccg gcggagaccc ctgaacgcag caagctcatg caaaaagatt ttgagggcga       540
     gaactcagaa tctttgccgt gtattcgatg caaatcttgc ggcacgtatg tttccccgag       600
     aaaaaattca ttttttgcct ttatggataa ccggaaccgt gccaatgtta aaatcagcta       660
     taagcaggtt atggccattt taattaactg ggtgcaacgg gtacccgtcg gcacaacgca       720
     acagaactat ggttttggcg cacacacagt tactgattgg tataatttct gtcgagaaat       780
     gtgcatgctg ggatttagca agagagagcc catgggaggt ccaaacacga tcgtggaaat       840
     tgatgagtct cttcttcggg gcaagaggaa gtataaccgt ggcaggttac ttcgtggtga       900
     cgtccgagaa gacgatgtca atgacacgga cgatgaggac ctggtcgcgc atgtatctga       960
     cgcccgcaat tacggttcca ggatcgaagg accatggatt tttgggatgt gtcatgtcac      1020
     cgtcgactcg gaaggggcaa ggtctacaca agaagtgcgt ttttttcacg ttttaaggcg      1080
     tgataaacag accttgctcc caatcattca aaacgaagtc ctccccagta ccaccataca      1140
     ctccgatcaa tgggcagctt acactggatt ggaccagctc gggtattcgc accagtctgt      1200
     caatcacagc gagaacttca ttgatccgca gactggcgca cacacacaga ccattgagtc      1260
     cacgtggcac cacatgaaga cgacactact ccgcaatatg cgaggtgttg agcctgagtt      1320
     actggattcc tatttggcag agctttgggc aagaaagttg taccgcgacc acgccgcatt      1380
     attggagaag ctttttgact ggatcgttga agcttatccg atccgcaata tttaattttt      1440
     ttatttattt tttttatttt gaacagttct ttttagagct acgagccttc gggttcactt      1500
     ttaaacaagt atttatgaaa taagattagt tatttgcgct akttcacgca ataagacaag      1560
     ttttctattg tgacgtcata gttgtattgt gacgttaaaa acbgcctttt acttataggt      1620
     aaacaatatg gcgcatgcaa ttacggtgac gcagcagttt ttcgcagatt ttcaaagtta      1680
     attttcgata cgaacgcccg agtttttttt aaaatataca gcgagtatcw gggagwcgta      1740
     agraayattt tgagaccaaa attttcactg gtcaccagcg gcaggattac c               1791
//
ID   Saci-2_LTR  repbase;    DNA;    INV; 471 BP.
XX
AC   BK004069;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   Schistosoma mansoni Saci-2 LTR retrotransposon: long trerminal
DE   repreat.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Saci-2_LTR.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004069; Positions    4476    4946.
XX
SQ   Sequence 471 BP; 115 A; 108 C; 84 G; 164 T; 0 other;
     gcgaccaaac ataaactctt tagaggaaga agagcaagcc ctatgtacac taagcttaca        60
     ggatgactca taagactact tcgtaaactg gcttttcccg ctgtaatctg acgtcccgcg       120
     ctttttgatt ttgaaataaa gaggctcgtg attcccactc catgttcttt cttgatgtga       180
     agtcttcgtt taacattgtg tgctgtgctt tttcagatct gtcctgtcct tttctgaccg       240
     ctagttccac gtgttacaaa cgttgtatcc gcattctatt cttctgcttt aatgcccacg       300
     gcctttgttt gaagattata atagtattct aacattcttt tagtcctttc catactccat       360
     tttgctgatg gtgccgtcac atgcagagga acctttatta accaagtgaa cttatttgtg       420
     gttgttatct ccgaaagccg cttacaagta acattcatta cataacactg g                471
//
ID   ROO         repbase;    DNA;    INV; 463 BP.
XX
AC   X01918;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   Drosophila roo transposable element from 68C glue gene cluster.
XX
KW   Repetitive sequence; transposon; ROO.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-463
RA   Garfinkel D.M., Pruitt E.R., Meyerowitz M.E.;
RT   "DNA sequences, gene regulation and modular protein evolution in
RT   the Drosophila 68C glue gene cluster.";
RL   J. Mol. Biol 168, 765-789 (1983).
XX
DR   GenBank; X01918; Positions       1     463.
XX
SQ   Sequence 463 BP; 139 A; 92 C; 95 G; 136 T; 1 other;
     ctgcagagtc gattaaaggc tcagattaga ccaaatgtaa aatcccagat aagaagactt        60
     tactcgttgn ctttttgtaa gaaactgatt ttatttggaa atatcttcgg tttaaatagg       120
     tgacatgaga atcgcatctt aaagtaaatg gcctacgcag aggcctaagt aaatagtccc       180
     cgccttatcg aggtcccacg ctcgggcaca tctgcctatc ttgagcggcg aggaccttat       240
     ctgtggtctc ccactaaggg actattttag gaggcgggga acgatctcaa gtgactgact       300
     catgtagtgt gcacttaaat tacatgtttt tgagcaatgc acccatgtcg ccttagataa       360
     caaaatccta aatataattt atcgctctcg attcatttac ataagatatg aacggagccc       420
     aaaattgtaa gtctttaaat atattcgtgt tcatgtgtga aca                         463
//
ID   CVG         repbase;    DNA;    INV; 486 BP.
XX
AC   .
XX
DT   04-OCT-2002 (Rel. 7.09, Created)
DT   04-OCT-2002 (Rel. 7.09, Last updated, Version 1)
XX
DE   CvG: putative non-autonomous DNA transposon element from oysters
DE   (Crassostrea virginica) - consensus.
XX
KW   DNA transposon; Interspersed Repeat; CvG;
KW   Non-autonomous DNA transposon.
XX
OS   Crassostrea virginica
OC   Eukaryota; Metazoa; Mollusca; Bivalvia; Pteriomorphia; Ostreoida;
OC   Ostreoidea; Ostreidae; Crassostrea.
XX
RN   [1]
RP   1-486
RA   Gaffney M.P., Pierce C.J., Mackinlay G.A., Titchen A.D.,
RA   Glenn K.W.;
RT   "Pearl, a novel family of putative transposable elements in
RT   bivalve molluscs.";
RL   J. Mol. Evol0-0 (2002)In press.
XX
CC   [1] (Consensus)
XX
CC   Uncommon, structurally similar to CvA. Modular organization
CC   includes
CC   subterminal inverted repeats (nt 27-37, 474-484), perfect
CC   inverted
CC   repeats (nt 76-83/108-115), self-complementary regions (nt 29-43,
CC   438-453,
CC   457-484) and an (ACGG)n microsatellite region (nt 420-435).
CC   Putative
CC   target site duplication AA. Individual CvE elements contain
CC   several copies
CC   of a 161 nt core repeat unit, the first copy being truncated at
CC   the 5m
CC   end (nt 94-252 and 253-413).
XX
SQ   Sequence 486 BP; 151 A; 95 C; 104 G; 136 T; 0 other;
     aacaagtgag acctaatgat gtctggacct gcgtcgcttg cagttatttc atttataaaa        60
     aaaattgaca taaaaaactt agattgttag ttgatttacg aatattctct aagttccaag       120
     gggctaactc ccacaaaaat gaggcgatca aaatttcctg ccgatatgca taacaccata       180
     tgatgtccta tctacatacc aagtttcatg ataattggat cagtagtttc agaggagttg       240
     cgatgacaag gtcatttatg agtattttct aagttccaag gggcataact cccacaaaaa       300
     tgaggggatc aaaatttcct gccgatatgc ataacaccat atgatgtcct atctacatac       360
     caagtttcat gataattgga tcagtagttt cagaggagtt gcgatgacaa ggttttggga       420
     cggacggacg gacggacgga gtgactgcac tcctagacct gctttcgcct tcggcgacgc       480
     aggtaa                                                                  486
//
ID   TART_B2     repbase;    DNA;    INV; 4056 BP.
XX
AC   U14102;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Drosophila melanogaster TART-B2.
XX
KW   reverse transcriptase; TARTB2; TART_B2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4056
RA   Sheen M.F., Levis W.R.;
RT   "Transposition of the LINE-like retrotransposon TART to
RT   Drosophila chromosome termini.";
RL   Proc. Natl. Acad. Sci. U.S.A 91(26), 12510-12514 (1994).
XX
RN   [2]
RP   1-4056
RA   Levis W.R.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (29-AUG-1994)Robert W. Levis,
RL   Fred Hutchinson Cancer Research Center, Division of Basic
RL   Sciences, 1124 Columbia St., Seattle, WA 98104, USA.
XX
DR   GenBank; U14102; Positions       1    4056.
XX
SQ   Sequence 4056 BP; 1322 A; 966 C; 875 G; 893 T; 0 other;
     gatcaagggt caagtaataa agattgaaag caaacaatca taccttggcg taatccttga        60
     cagcaagcta accctcagct cccacgtcac aaagctgatg ggcaaataca ctacagccta       120
     cagaaaaatg acatggattc taaacagaag aagcaaactc cctaccaaga ctaaaatgct       180
     gatccttaag tcagtccttt caccaatatg gcagtatgcc atagcagctt ggggtcccct       240
     tgtgacggat gcacagataa gacggatcca agtcgaggaa aataggaaaa tgagagacat       300
     atgcagagcg ggtagataca cgagcaacca aactataagg gaccgctatg gaatcaaaac       360
     agtagaagaa ttctatcaac aggcactcca caggttctca gaaacaataa aatctcaccc       420
     aaatatagct gtacgcagga tattcacaag gcactatatc ccgaacagac tagaaagaag       480
     caggcagagg tacttgaaaa tgacaaatga acacatcacg caaaaacaga ctggacaaac       540
     actctcacct aaactcctaa aaatccctga tctaaatgac tgcagaaccc ttaaaaagcg       600
     gaatgaaaga gataaaataa ggcaaaccca tctaattgaa ctccccaccc tgctgagact       660
     agaggaagaa gaggaagagc ttagaagaat aaaaaaacag gaagagaggg aaagaaggga       720
     aaaggaaacc caaaagtggc ctccagacag atggtgtgaa ttagaaatta acctatataa       780
     taagcaatat agaaggggcg atctaaccag gcaggaaatc atacaaaaat ttagaggaca       840
     accactaaat gtacagagga taattttacc cgactataaa ggagaccagg aacacaatta       900
     aaagtaaatc atgggaaagc aggggaaaaa aaaacagaag taacaaaatg gcggaagggg       960
     tggcaaaata tatataaaaa taagaaaaga tagaaataaa aaggctaaag gctcacttac      1020
     aggttaattc aaaagggaaa cgtgcttaca tatctaatgg taaaaactaa cttataacac      1080
     ctactggatg acatagtgag gatgccacag gttgcgcact tgaatcacgc tttcctggcg      1140
     agattgttaa ggcatcaccg ggatcccgtc tctctttcct aactggagga ctcatgcctg      1200
     aaatcttttc cgcttcaccg gcacctgatg gccatatctg ctactgcgcc ttgcgctcca      1260
     cggacgctcc ttcctgaaag aaagagaatt tgttttagtt ttcctttctc ttcttaaaaa      1320
     tataacaaaa acagcagcag tagccgacca acaacatact tagcttacca aggcagcagc      1380
     aatgatacca acagaagccc tacagtgtgc tgaacaatat gccgcccacg cccaccactt      1440
     ctggaactca ggaatggggg gtacggaatg ccggaaactg gaggattcgc ctcaaatgtt      1500
     acgcttacat ctttgagcaa atcgcctgcc tcctcgtcta acggcccggc gtcttggtac      1560
     gcccagaagt agcagcggta gcaggattag cagcctccac agagatatgt tcatcccagc      1620
     atcagtccag ttggcattgt gatgccgccg tagcgtacgc cctcagagac ccgactggaa      1680
     tcccaggaca agagacggca gcacgcctgg gcttaggcgc gggacaacat gcagagattc      1740
     gtcaatgaga atggcggcac tggaatcacc tttcagctga gcgggataat gagtcggcaa      1800
     cgcaccgcac tatcagcagc aataacaaca tcggcagatg acctggaaga aaggaaaaaa      1860
     catgtatcag tcttttcttt tctttttttt tcccattagc atgcgttttt aaattccatt      1920
     cctgaaaacc ggcgttttcc tgtaaaagac actggacggc ggcgtttgtt ttaaatgcaa      1980
     agattggatg cttgcatcag ggctgacgtc cttgaatagc cgatgccttg taattgcctg      2040
     catagccgcg gaggtcctga tgacggatgc tggcctgtat ttggccacca ctccgatgcc      2100
     atgacagcag caacagcagc ggtttttgca aatgagaggg atcaggaggc ggcaacacat      2160
     tcacccgtag cagcaacaac aagcagtggt agcatcagca gggagtcttc tcgccacaat      2220
     agccatttgg aaatttctcg acgacccgac ttcctgcttg gcccatggtc aatcacactg      2280
     gaccagttaa cagcggcgtt ttaccctgga agaaagaaaa cttgtattat tcattccctt      2340
     ttctctcaca gttgggtatt taagtgcatt cctggccaac ctagcgtgtc tcctggcaat      2400
     gacgtcggac tcaacgcatg cttcccttcc gacacagtaa ggatgttcgc atctgggctg      2460
     acgggccagg ccggtccgtt gccatacatg ctagcgtttc cgcggcggcg tagtgaacat      2520
     caaaccgtat aatggcgaag acgacgatga tccggccgga tggcagctcg acgacggtag      2580
     caggccacca tgcccgccag cccgcagcta ggatagcagc aacatcagcg tcttattaac      2640
     gcgaacggcg gcactggccc ttagctgacc agctgcaaca acatcagcga cgcagtctcc      2700
     accagcagca acaacagcag cggcgcttgc gacagcagca gcagggaatg gttctgccgc      2760
     agtcgcctat tgctgcctat aaagagcatt ccttgccaat tggctttctg tacgacgacg      2820
     atgatcctgc ggacaaatcc acctttccgg acgcctgagt attatggcga gcctgctgat      2880
     cattgtttct ccgactcctt acttgaccac tggacaatca tacaatcacc ggcttttcac      2940
     atctggaaga aagaaacctg gattagtatt tgcccttcag atttgtatga aactgcattt      3000
     ctggccaacc ggagtgtttc ctgcagacga cgctggactg cgacgcactt ttttctacca      3060
     acacagatgg gacgcttgca tcagatctga cgggccagac tggccgatgc ctggtacacg      3120
     atggcatctc cgcggcggcg agatgtgcag cgacgctgaa agcaataata attcttttac      3180
     tttgcagtat caaaaatgag aagccacatc acaatttaca tcagcaaaaa ttacacgtga      3240
     tatctttttc ttttgcctag gagtagtgag acctgctacc aaaatgacca gtaataccgg      3300
     ctaacggaag cgagatatcg ataatcattc tggcggtaaa atagccagaa catcgataac      3360
     cagctgtgca ttttcccttc gatttatcga agtcaaatag cccgcctagg ctatcggacc      3420
     ggatcggcaa gtcagtagtg attaaaaatc cggcagaggc gcctgtgcag cagctaccca      3480
     aagtgaacac gacgaaacgc aacaacaaaa tggacggaca taatggagat caaagtgaag      3540
     gatgggcaac agtgctatct atctcctcgg atgatagtaa ctccttgtcg tcgctgcata      3600
     tataaaataa taaatttctt aaaataattt catcgctgga ttcctgcgcc accataaatt      3660
     acttatagaa tacacttaac actgtaccca ctaatgctaa aaattttctt atacaatttt      3720
     actttaaagc taaaactact taaactatgg cgcgtaaaac ggccgtcaaa aatatccaaa      3780
     aattgtactt gccataaaca aattctaaca taatgtaaat cctaaatcgt aaaatcatgg      3840
     cgaacataac cgccgccaag caaatcaaaa aatgttccta gaaattgtaa atcttaaacc      3900
     tacttctcta actaaagcgc gcacaactgc cgctgatccg aaattgtaaa atgccataaa      3960
     ttgtaactat atattttata aaaaaaatca gagtacaata aaatgacagc gccgaaaggc      4020
     actgaaaata tttaaaaaaa aaaaaaaaaa aaaaaa                                4056
//
ID   Merlin1m_CI repbase;    DNA;    INV; 605 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 4.01, Created)
DT   16-JUN-2003 (Rel. 4.01, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon Merlin1m_CI - a consensus.
XX
KW   nonautonomous DNA transposon; Merlin/IS1016 superfamily; 9-bp TSD;
KW   Merlin1m_CI; Merlin1_CI.
XX
OS   Ciona intestinalis
OC   Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona;
OC   Phlebobranchia; Cionidae; Ciona.
XX
RN   [1]
RP   1-605
RA   Feschotte C., Wessler R.S.;
RT   "Merlin1m_CI, a family of nonautonomous Merlin/IS1016-like DNA
RT   transposons from the sea squirt Ciona intestinalis.";
RL   Repbase Reports 3(5), 96-96 (2003).
XX
CC   [1] (Consensus)
XX
CC   Merlin1m_CI is a family of nonautonomous elements related to the
CC   Merlin1_CI family. There are ~250 Merlin_Ci1m elements in the C.
CC   intestinalis draft genome sequence (WGS assembly 1.0, 116.7 Mb).
CC   The sequence below is a consensus constructed from 20 copies
CC   extracted from the database. Elements can be grouped into
CC   subfamilies
CC   that range in size from 400 to 700 bp and have 90-99% similarity
CC   to
CC   the consensus. Some subfamilies have recently expanded because
CC   they are very homogeneous in length and sequence. The Merlin1m_CI
CC   consensus sequence is 605-bp long with 155-bp TIRs (5
CC   mismatches).
CC   The TIRs are almost identical to those of the Merlin_Ci1
CC   consensus,
CC   but the internal 295 bp are of unknown origin. Like Merlin1_CI,
CC   Merlin1m_CI elements create a 9-bp TSD upon insertion.
XX
SQ   Sequence 605 BP; 170 A; 109 C; 132 G; 184 T; 10 other;
     ggtaatactg ccgctggtga ccagtgaaaa ttttggtctc aaaatgttcc ttacgtctcc        60
     ctgatactcg ctgtataatt ttttttwaaa aaactcgggc gttcgtatcg aaaattaact       120
     ttgaaaatgc gcgaaatcgt gctgcgtcac cgtattttcc acacgagccg tcaaaggtta       180
     gattatkacg tcatagaatg cgtattacma cctttgattt cwacgttaca gattacgtaa       240
     tttgttagtt tttttrgatt tagrggttrs gggttaaamg taggggttag ggttgggtta       300
     agggttaggg cttggggttt tccctagcat aaaacagtgc gaaaaacaag attataacgt       360
     gctgtaacgt acgtaatatg tcactactgt gacgtaacat atcgctattg tgacgtaata       420
     aatcgttaac cttacgcaag tcaggcgaat tacggtgacg cagcacgttt tcgcgcattt       480
     tcaaagttaa ttttcgacac gaacgcccga gttttttcwa aaaaaaatta tacagcgggt       540
     atcagggaga cgtaaggaac attttgagac caaaattttc actggtcacc agcggcagta       600
     ttacc                                                                   605
//
ID   TDD_DD      repbase;    DNA;    INV; 527 BP.
XX
AC   K02644;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Slime mold (D.discoideum strain Ax-3L) transposons Tdd-3/Tdd-2 3'
DE   junction.
XX
KW   transposon; DDTDD; TDD_DD.
XX
OS   Dictyostelium discoideum
OC   Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
XX
RN   [1]
RP   1-527
RA   Poole J.S., Firtel A.R.;
RT   "Genomic instability and mobile genetic elements in regions
RT   surrounding two discoidin I genes of Dictyostelium discoideum.";
RL   Mol. Cell. Biol 4, 671-680 (1984).
XX
DR   GenBank; K02644; Positions       1     527.
XX
CC   This is an invertebrate, not a plant.
XX
SQ   Sequence 527 BP; 276 A; 81 C; 35 G; 134 T; 1 other;
     tctagaatac atcaaaaaag caaaagatct gaaaanctta tcagcaaaag accataataa        60
     cttcaaagat cctaagatcc ttctcacttc aacgatcaag ctaagaaaaa caacagctaa       120
     ttactattgt attccagaat catctctccc aaatattata tcttttgatc aattcatatg       180
     attaaaataa cccttcagct taaatgataa gcctttaaat aaatattaaa taaaactcgt       240
     attaacacag atggacatat atcaatcttg ttaatccaat attaaaaaaa aaaaaaaaaa       300
     agaaaaacat atccatcatc aatctaacat caactacatt caatctatct actctacaca       360
     ctaattcctt caatccttgg attaggaata agaatagatc tgaataaacg agaaagaaaa       420
     aaaaaaaaaa aataaaaata aaaataaaaa atatttttat ataaacacat aattaaaaaa       480
     aaaataataa aaataatata aaaaaaaaaa aaaaaaaaaa aaaaaaa                     527
//
ID   T412LTR     repbase;    DNA;    INV; 481 BP.
XX
AC   M30371;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   D.melanogaster extrachromosomal transposon 412, 5' long terminal
DE   direct repeat.
XX
KW   transposon; DROTN412C; T412LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-481
RA   Shepherd M.B., Finnegan J.D.;
RT   "Structure of circular copies of the 412 transposable element
RT   present in Drosophila melanogaster tissue culture cells, and
RT   isolation of a free 412 long terminal repeat.";
RL   J. Mol. Biol 180, 21-40 (1984).
XX
DR   GenBank; M30371; Positions       1     481.
XX
SQ   Sequence 481 BP; 159 A; 102 C; 93 G; 127 T; 0 other;
     tgtagtatgt gcctatgcaa tattaagaac aattaaataa aatagcatat taacttatgg        60
     cagcactttg ttgctatgtt tatgtttatg tttatgcacg cagttaggcc agggcggatg       120
     taacatgatc acccactcga aggcaaaaag tataagtgca tggtcagcat tcacacgccg       180
     accaaataca tattacatac gtacatacat atctcgctct cccgataagc ctagatatat       240
     aagatataca taagaacgcc gctccgctgc tggcgtaccc ggcagcgcag ctacgcggat       300
     tagcctaagt ccaaatatat taaaaactgt aaaatcggag agactctgta gacgttgagc       360
     ggacagaacc atttctgcct actctaaaat caaaagaaga aattgaataa atatatgtca       420
     gcccgacggc tgccttcaac ttaaaacgga cttgtgttct gaattggagt tcatcattac       480
     a                                                                       481
//
ID   DMR_DV      repbase;    DNA;    INV; 873 BP.
XX
AC   X03936;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. virilis moderately repeated DNA element.
XX
KW   Repetitive sequence; transposable element;
KW   pDv repetitive sequence; DMR_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-873
RA   Zelentsova S.E., Vashakidze P.R., Krayev S.A., Evgen'ev B.M.;
RT   "Dispersed repeats in Drosophila virilis: Elements mobilized by
RT   interspecific hybridization.";
RL   Chromosoma 93, 469-476 (1986).
XX
RN   [2]
RP   1-873
RA   Zelentsova S.E., Vashakidze P.R., Kraev S.A., Evgen'ev B.M.;
RT   "Repetitive sequences dispersed through the genome in Drosophila
RT   species of the virilis group.";
RL   Mol. Biol 20, 577-583 (1986).
XX
DR   GenBank; X03936; Positions     660    1532.
XX
SQ   Sequence 873 BP; 206 A; 173 C; 210 G; 284 T; 0 other;
     aatcatcgaa aaagtttcga ttttcgcacc gattttgatt ttgaaaaaaa aaacgtgacc        60
     ccttgccatt ttgtcgactt gggtcggggt ttaggtttca ttttttttat gccaaccgat       120
     agaactaacc cttacggttc aaaatggtgt gaatacaaaa ctggcatatt gggaatattc       180
     aaaacaacaa aagttaattt cgaactatgg ttttgtagtc tttaacattc gttttggaac       240
     gtcatatctc cgcgcggagt tatgtcgttt tggaacgtca tatctccgcg cggtgtaatg       300
     tcgttttgga acgtcatatc tccgcgcgga gctttgtcgt tttggaacgt catatctccg       360
     cgcggagtta tgtcgttttt gaacgtcata tctccgcggg gagctatgtc gttttggaac       420
     gtcatatctc cgcggggagt tatgtcgttt tggaacgtca tatctccgcg tggagttatg       480
     tcgtttggga acgtcatatc tccgcgggga gttatgtcgt ttgggaacgt catatctcca       540
     cgcggagtta tgtcgttttg gaacgtcata tctccgcgcg gagttatgtc gttttggaac       600
     gtcatatctc cgcgtggagt tatgtcgttt gggaacgtca tatctccgcg gggagttatg       660
     tcgtcttgga acgtcatatc tccgcgggga gttatgtcgt tttggaacgt catatctcca       720
     cgcggagtta tgtcgttttg gaacgtcata tcttgggcgg agctattacc cgagatattg       780
     aaaaaaaaaa atcatcgaaa aaggttcaat tttcacaccg acctcgattt tgaaaaaaaa       840
     aacgtaatgt aaccccttgc cattttgtcg att                                    873
//
ID   R2_TM       repbase;    DNA;    INV; 1410 BP.
XX
AC   AF015817;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Tenebrio molitor retrotransposon R2 reverse transcriptase gene,
DE   partial cds.
XX
KW   R2_TM.
XX
OS   Tenebrio molitor
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia;
OC   Tenebrionidae; Tenebrio.
XX
RN   [1]
RP   1-1410
RA   Burke D.W., Malik S.H., Eickbush H.T.;
RT   "R1 and R2 Provide an Estimate of the Age and Stability of
RT   Retrotransposons.";
RL   Unpublished.
XX
RN   [2]
RP   1-1410
RA   Burke D.W., Eickbush H.T.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (24-JUL-1997)Biology, Univ.
RL   of Rochester, 135 Superior Road, Rochester, NY 14625, USA.
XX
DR   GenBank; AF015817; Positions       1    1410.
XX
SQ   Sequence 1410 BP; 441 A; 334 C; 357 G; 278 T; 0 other;
     gcctacgcgg acgatatcat cctgcttgca gataacgtcg agactgcgca aagacttctc        60
     aacgcctcca caagattctt tgaagaccgg gggctcgaca tcaaccccgc gaagtgcgag       120
     tctctagtga tgcgtactct cccgtcaaag aagaaggtct tcactgtgac aactccgcaa       180
     ttctacgtta aggctgaacc gatcaagcca atagaagttg gaaaggcttt taaatatctg       240
     gggcagcagt tcacatgcac gggttcaacc aactgctcaa ccaaagatct aagcgaacag       300
     ctacttagaa taaagaaggc cccactgaag ccccaacaaa aaataaacat catcaaaacg       360
     tatctgatgc cggcctacat ccactcaatg cagaacccag ccgtcaacaa aaagatatta       420
     cgagaagtgg ataggaaaat cagaatggtc gttaagggga tactacatct tccactccat       480
     ttgtccaaca ccgcaatata tgccccggcg aaaatgggag gtctaggaat gttttccttt       540
     tcaagaaaga tccccatcat tgtactaaaa cggttaaaca acttaagccg tacttgctcg       600
     aacttccacc ttgtgttgcg agaggccgcc ccatgggtca atagattaaa gaaaatggta       660
     aggccagacg taacgacaaa agagcaagtg gacagagcaa atggggtgga acatgagggt       720
     tcgtactacg gcggcggtac gatgcaatgt cggaacgact ctgcttcaaa tacttggatc       780
     aacacccccc caaggtattg gaccggatcg gattacgtga aagcggttca gctaagactg       840
     aattgcctgg ccaccagagg ccttccctat aacccgccgg aacaaagaag atgcagagcg       900
     ggatgcgaca gggttgaaag cctgtcgcac gtcttacaga aatgccctct aggacacaca       960
     atgaggatga gaaggcacaa ttacatcgtt aaaaggctta agaccatggc tctgaagaag      1020
     ggatggacgg tggaggagga gccgatatgc gatgcgcgcg gtgtactgag gaagccagac      1080
     cttatcctca gcaatgaaga gacggcccta gtagtggacg ccatggtgtc ctgggagtgc      1140
     cccagagacc ttgcagagac attcgattgc aagaggctgg tatatgacca gcctgagttt      1200
     accagcgtac tcgaatctaa ataccatcca aggaatatca gagtactacc cttcatcatc      1260
     ggcgcaagag gtatgtggtg cagacagagc accgaaacac tagaagcgat gaaggtgaac      1320
     aatgtgagca atcgaaggga actggtccat acaacactga gaggaagctg gagtatacat      1380
     cgagaattta cgaggagaag ctgggaatag                                       1410
//
ID   SINE_CP1    repbase;    DNA;    INV; 321 BP.
XX
AC   X79507;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   C.pallidivittatus Cp1 (SINE transposable element), clone pCp125.
XX
KW   transposable element; SINE; CPCP1125; SINE_CP1.
XX
OS   Chironomus pallidivittatus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Chironomoidea;
OC   Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-321
RA   He H., Rovira C., Recco-Pimentel S., Liao C., Edstrom E.J.;
RT   "Polymorphic SINEs in chironomids with DNA derived from the R2
RT   insertion site.";
RL   Unpublished.
XX
RN   [2]
RP   1-321
RA   Rovira R.C.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (31-MAY-1994)C.R. Rovira,
RL   University of Lund, Dept of Molecular Genetics, Solvegatan 29,
RL   223 62 Lund, SWEDEN.
XX
RN   [3]
RP   1-321
RA   He H., Rovira C., Recco-Pimentel S., Liao C., Edstrom E.J.;
RT   "Polymorphic SINEs in chironomids with DNA derived from the R2
RT   insertion site.";
RL   J. Mol. Biol 245(1), 34-42 (1995).
XX
DR   GenBank; X79507; Positions       1     321.
XX
SQ   Sequence 321 BP; 91 A; 63 C; 67 G; 100 T; 0 other;
     aagcttgctc tgctaacaga acgacttatt ctcattttga ataagcatat tatctctcta        60
     agcgagcgaa tgctttacaa ccgttgaaaa aagagtggtt catatatatt ggcattctgc       120
     caatgccaat ggcaaagccc gatagctcag tggtctgagc acttgaccgg caatcgagag       180
     gtgcgaggtt cgattcccgc tcgggaagag tcattgggtg aattactttt ttttcaactt       240
     tttcttttaa actatttctc tctaagcgaa gaaatgctta ttcaaaatga gaataagtcg       300
     ttctgttagc agagcaagct t                                                 321
//
ID   STTREP_Mp   repbase;    DNA;    INV; 169 BP.
XX
AC   AF039654;
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Myzus persicae subtelomeric tandem repeat sequence.
XX
KW   STTREP_Mp; Tandem repeat; Telomeric repeat.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidiformes;
OC   Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RA   Spence M.J., Blackman L.R., Testa M.J., Ready D.P.;
RT   "A 169 bp tandem-repeat DNA marker for subtelomeric
RT   heterochromatin and chromosomal rearrangements in aphids of the
RT   Myzus persicae group.";
RL   Chromosome Res0-0 (1998)In press.
XX
DR   Genbank; AF039654; Positions       1     169.
XX
SQ   Sequence 169 BP; 54 A; 39 C; 26 G; 50 T; 0 other;
     ccaaaattaa tcgaatttcg ggaatttcaa agttctcgtt ctcccgttct attcaaccaa        60
     atgacttcaa accttcacca aactcaagag gaagtcaata gctttctttt gataccactc       120
     cgacttggtt agctcaaata cacaggtcgt gagacaattt tgaaaatgg                   169
//
ID   RCC9        repbase;    DNA;    INV; 366 BP.
XX
AC   X61257;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   C.elegans RcC9 repetitive DNA.
XX
KW   Repetitive DNA; RCC9.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-366
RA   La Volpe A.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (16-AUG-1991)A. La Volpe, CNR
RL   International Institute of Genetics and Biophysic, Via Marconi
RL   10, 80125 Naples, ITALY.
XX
RN   [2]
RP   1-366
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence
RT   in Caenorhabditis elegans.";
RL   Unpublished.
XX
RN   [3]
RP   1-366
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226, 159-168 (1992).
XX
DR   GenBank; X61257; Positions       1     366.
XX
SQ   Sequence 366 BP; 100 A; 72 C; 64 G; 130 T; 0 other;
     gtaaatctct gtgattcaag ttttccgcat tcagtgtcca atggagcgcg ggtcgagcca        60
     gaacctcgtg tagaactttg cagaagtttc ttgaattttc cacgaaattg aacatttcag       120
     aattttatcg aattttttag agagttctgg aacattgcag acttttcccg atttttctag       180
     aaagttctgg aatattccag aattttcccg aattttctag aaaattctgg accattccag       240
     aactttctcg gattttctag aaaattctgg accattccgg aattttctcg aattttctag       300
     aaacttctgg accattccag aactttctag aattttctag aaaattctgg accattccgg       360
     aatttt                                                                  366
//
ID   TRANSIB3    repbase;    DNA;    INV; 1944 BP.
XX
AC   .
XX
DT   01-AUG-2000 (Rel. 4.3, Created)
DT   01-AUG-2000 (Rel. 4.3, Last updated, Version 1)
XX
DE   TRANSIB3 is a DNA transposon, a partial consensus sequence.
XX
KW   DNA transposon; transposase; TRANSIB family; TRANSIB3.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1944
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB3.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB3 belongs to the TRANSIB family of DNA transposons.
CC   It has generated duplications of the CNNCG target
CC   sites upon its integration into the genome. TRANSIB3 has 43-bp
CC   terminal inverted repeats and it encodes putative transposase
CC   which is not similar to any known transposases.
CC   There are ~10 copies of TRANSIB3 which are ~95% identical to the
CC   consensus sequence. It is likely that TRANSIB3 lost its activity
CC   several million years ago.
CC   TRANSIB3 encodes protein involved in transposition:
CC   KNYVFVDEYLFGHAELLDIWSNNSRSEDAVRQHIFKKIGQNNLNECCISLLNKKVKSFFDYIRK
CC   HLPGCNRSLDRLKKKHFKWLASSISIIADCKTPKLVYEKANDRLKRKLASDLFGPENNTSVPLL
CC   LHAASVSSKKGNEKDMAVVLKAAGNSDNINNIKRKMFSSEPTQMSVDNALAFLFENGFTKSQYI
CC   NLKRNTKVHGFDIYPSYPDVLNAKLKLRPNGIEYFENKAQVKLQQLLNHTTSRILEMQYETFKA
CC   NTNSIECQLIFSYGYNGSTGQSIYKQRYEEIGAVYDGSLFVTTIVPLKLVDNEQKIIWINRSPQ
CC   SIRFCRPLKIEFIKETRELILAEKENLDTQTRNLHIYLHKINNINIFVKYVGQMTLIDGKNLHL
CC   NMILFYFIFYI
CC   This protein is 39% (first 250aa) and 41% (first 290aa) identical
CC   with those in TRANSIB1 and TRANSIB2, respectively. There is
CC   only partial ~60% nucleotide identity between TRANSIB3 and
CC   TRANSIB2 or TRANSIB1.
XX
SQ   Sequence 1944 BP; 696 A; 285 C; 324 G; 639 T; 0 other;
     cacactggtt ttttatgtgt ttttttttgg cagaaagtca aaaaaaaata ttttaacgga        60
     ataaaaaaat gtatggtttc tttatattta ggatagtctt attagataaa aagtcgattt       120
     ttactttttt acgcaaaact ggcttatcgt cgacctctca aagacagctg attgtcgata       180
     acatgcgtaa gacaaaattg cggcaaatca ttttgcaaca tttgtggttt atatttcctc       240
     agagaattaa aaaagttcaa agttttgtca tggaaaacag tagcacaggt atgtagattt       300
     gtagttcact aacatttttg tgtatgttat atgtttttgt gtagttgtat cgtgttttgt       360
     ttatgtgcct tttttacagt caacttaaca aatgtagctg tgtttcgtgg aatataactt       420
     ggaaaccact tcaaaaaaat tttaacggca agttattaac taacatgtgt ataatattat       480
     acaactagtt tcatatgctc ctttttgttc ctttttgaaa aaattacgtt tttgtagatg       540
     aatacttgtt tgggcatgca gagctgctag acatttggag caacaatagt cgctctgagg       600
     atgcagttag gcagcatata tttaaaaaaa ttggtcagaa taatttaaat gaatgttgta       660
     tttcattgtt aaataaaaaa gttaagtcct tctttgatta cataaggaaa catttgccag       720
     gttgcaatag atcgttggac aggttgaaga aaaaacactt caaatggctg gcatctagta       780
     ttagtataat cgctgattgc aaaactccaa aactagttta tgaaaaggct aatgaccgac       840
     ttaaacgaaa attagcttcg gaccttttcg gacctgaaaa taatacttct gtaccattac       900
     tcttgcatgc tgcttcagtt tcgtctaaaa aaggaaatga aaaggacatg gcagttgtat       960
     taaaagcagc tggtaacagc gataatatca ataatataaa aagaaaaatg ttctcttctg      1020
     agcccacaca aatgtccgtc gacaatgcat tagccttttt atttgaaaac ggatttacaa      1080
     aaagccaata catcaattta aaacggaata caaaagtaca cggctttgat atttacccat      1140
     catatcctga tgttcttaat gctaaactaa agcttagacc aaatggcatc gagtattttg      1200
     agaataaggc gcaagttaag ttacaacaac tcttaaacca cacaacttcg cggattcttg      1260
     aaatgcagta tgaaactttc aaagcaaata ccaactcgat agaatgccaa ttaatattta      1320
     gctatggata taatggatca actggtcaga gtatttataa gcaacgttat gaggaaatcg      1380
     gtgctgtata tgatggatcg ctgtttgtta ctacaattgt gccattaaaa ttagtagaca      1440
     atgaacaaaa aataatttgg atcaacagat cgccacaatc tatacggttt tgtcgtcctt      1500
     taaaaattga atttattaag gaaactcgag agcttatatt agcagaaaaa gaaaacttgg      1560
     atacccagac tcgtaatctg cacatatatt tgcataaaat aaacaacatt aatatatttg      1620
     taaaatatgt cggtcaaatg acactaatag acggtaaaaa tttacatctt aatatgattt      1680
     tattttattt tattttctat atataatatc aataaaatat ttaattaaat acagatacaa      1740
     aaatattttt tttttggtaa ggtaaatatt tttatggcat atcggccaga tcgtttatat      1800
     ggcagctata tgaaagttga ccaaatcact tgaaattttg tgaatcatct tgggggaagt      1860
     aaagagtaac acaaaccaaa tttggtgaag ataggtcatc atttcgaatt tctgccaaaa      1920
     aaaaacacat aaaaaaccac agtg                                             1944
//
ID   Saci-3_INT  repbase;    DNA;    INV; 5217 BP.
XX
AC   BK004070;
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Schistosoma mansoni Saci-3 LTR retrotransposon mRNA, complete
DE   sequence.
XX
KW   LTR retrotransposon; Schistosoma mansoni; Saci-3; Saci-3_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-5217
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RP   1-5217
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004070; Positions       1    5217.
XX
CC   Key Location/Qualifiers
CC   CDS 283..1149
CC   /codon_start=1
CC   /product="gag protein"
CC   /protein_id="DAA04501.1"
CC   /db_xref="GI:44829174"
CC   /translation="MVDNDKNNINMIDSEIQVISFRPVPFIPHDPEVWFAALESQFEI
CC   RRITNQRQKYAYALESLPGDHLTAVREVVLNPNVPNVYDRLKDAILRHFLPSREERLR
CC   TLLARHPMGDAKPSHHLTRLQSLAGNMTADSEIVKELWFEALPVSIQPTLTALLEDTP
CC   LNKVALIADKILARVNTKGDHLVASFSRSNVDLDARRPPAHGDRDRCIHTRLSFRDRA
CC   NVPAPYVPRPRSQSRKAVTTRPKRASSKPRQKAVSEASPGWCWFHRAFGAGARHCRAP
CC   CSYKAGNFSAGE"
CC   CDS 900..4400
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04500.1"
CC   /db_xref="GI:44829173"
CC   /translation="MYPYSSQFPRPRKCASPLRPPTQVTISKSRNDSPQAGIFQATPE
CC   GGFGSESRLVLVSPCFRSRCPSLSSSLLIQGGKLLSRRVNAAVLAGTSPQVGRLFYVH
CC   DYRTNARYLVDTGAQVSVVPIGNSKSQATMLRLRAANGSVIPTYGTRQLTVNLSNRRQ
CC   YLWTFIIADVPTAILGIDFLQHYELLVDSRRLQLIDTSSNSNFMGSKAHTNAYRITGV
CC   FHSRDDLFHVLFQKFPKLTKPLEETPSVTNRVVHHIVTRGPPVTARPRRLAPDKLAFA
CC   KREFDNLLATGIIRPSHSPWASPLHMVRKKDGVSWRPCGDYRALNTATRFDSYPIPHI
CC   HDITASLKGTTIFSKIDLVRAYHQIPVALEDIEKTAITTPFGLFEFLRMPFGLRNAAQ
CC   TFQRFIDSIVRDLDFVHVYIDDLLIASSNVDEHYQHMTLLFQRLSDNGIIVNPDKCEL
CC   GKKEMKFLGHVIKHEGILPCEDKVRTIMEYTVPSTLKELKAFLGLVNFYRRFISHAAE
CC   QLRPLTDLLRGNPRKLEWNDAARTAFSDIKTALAQATLLVHPDPSATLSIAVDASDFA
CC   IGAVMQQNISGSWQPLEFFSRRLTPTETRYSAFGRELLAAYCAIKHFRHAVEGRKFIL
CC   FTDHKPLTYALHTKSDRYSPRECRHLDYISQFTTDLRHVKGESNCVADALSRIQLNAV
CC   TLPVLDLPAMAAAQANDTSCTEAQQSTSLQCREVPLATSSGTILCDTSTGLPRPIVPS
CC   AYRRLVFDALHGLSHPGIAATLRLIAARYVWPSMNKDVRMWVKQCLQCQRSKVHRHVA
CC   APIGTFATPDARFDHVHIDIVGPLPPSHGYDHILTCIDRFTRWPEAIPITSITAETVA
CC   HRFVERWIAMYGCPSTVTTDRGQQFESALFSSLTRLLGTERIRTTAYHPASNGLVERF
CC   HRQLKSALRAHENNNWYETLPLVLLGIRTSLKADIQCSAAELVYGTTLRLPGEFFTPR
CC   SSTKFGESDYVQRLSAFMRTLTPVSTRIQHRQVALPRELSTCSHVFIRVDSVRKPLQQ
CC   PYEGPFHVISRHEKTFKVDRRGRIETVSIDRLKPAHVDDSAIPDKPRPNVRPIRASSG
CC   ISTSTSDPTLDAPKTSFSRPSQQHVSSAPSTDETSVSRPDLQTTPPLTADEIAGSRCS
CC   NETTVSRSGRRVRLPVRFLD"
CC   CDS 4312..5010
CC   /codon_start=1
CC   /product="ORF3"
CC   /protein_id="DAA04502.1"
CC   /db_xref="GI:44829175"
CC   /translation="MRLQAHDVRTRLPSHVPVAEYAYPYAFSTNLITNYGYSIGIYPY
CC   TTRKLHFSLFLSCFFVYPEPTPLTIAVLVSSTLVNLGESWPDHPRYSQRTQSISLTPN
CC   TYDIHLVPNMVILVASGSLAQSGFVLRLQRFWSGPLRTQPSDSGYKPLWCSMLIQAIN
CC   TARSFWYRSTSKTFGGNSRINDHSLFCQRFRPTIARFAISPTNETATYRKCKSFLAGG
CC   SCSDRPVSIRTRLE".
XX
SQ   Sequence 5217 BP; 1318 A; 1451 C; 1084 G; 1364 T; 0 other;
     taaagccttc tgatttacgg gctatcaagg gaaccaagtc gtttttggac gcgtaattga        60
     atagtagtgg tgatcatagt ccgtccacga ctcgacatcc actacaactg gtgagccgta       120
     tttggaacac gcaatacagc tggtaaccca atccatcgag cacaagtcaa acttggccaa       180
     ttctccaaac cagatcaatc cggtgagtct atttatctat ccacatctgt tgcatatatt       240
     cgtattgata tttttcaata tataatattt tggcaactta atatggtaga taacgataag       300
     aataacataa atatgataga ctccgagata caggttatca gttttcgacc ggttcctttc       360
     atccctcatg atccagaagt ctggttcgcg gcactggaat ctcaatttga gatccgccgc       420
     ataaccaatc aaaggcagaa gtacgcctac gctttggaat cattgcccgg ggatcaccta       480
     accgctgtcc gtgaggttgt cctcaatccc aacgttccaa acgtttatga ccgtcttaag       540
     gatgccatcc ttcgacattt cctcccatca agagaggaac gattgaggac acttttagca       600
     cgtcacccta tgggtgatgc taagccgagc caccacctca cgcgcctgca atcccttgca       660
     ggaaacatga cagctgactc tgagatagtc aaagagttgt ggttcgaagc cttaccagtt       720
     agtatccagc caacccttac ggctctgctc gaggacaccc cgctcaacaa ggtggccctc       780
     atagcagata agattctggc acgagttaac accaaaggcg accatttagt tgctagtttt       840
     tcccgttcta acgttgatct cgatgctaga cgacctccgg ctcatgggga tagggacaga       900
     tgtatccata ctcgtctcag tttccgagac cgcgcaaatg tgccagcccc ctacgtcccc       960
     cgacccaggt cacaatctcg aaaagccgta acgactcgcc ccaagcgggc atcttccaag      1020
     ccacgccaga aggcggtttc ggaagcgagt ccaggttggt gctggtttca ccgtgctttc      1080
     ggagccggtg cccgtcattg tcgagctccc tgctcataca aggcgggaaa cttctcagcc      1140
     ggcgagtgaa tgcggccgta ctcgccggca cttcacctca ggttggccgt ttattttacg      1200
     tgcacgatta tcgcaccaac gctaggtacc ttgtggatac gggtgcccaa gtttctgtcg      1260
     tacctatcgg taacagtaag tctcaagcca ctatgcttcg actacgcgct gcgaatggct      1320
     cagtcattcc cacctatggt acacgacaac ttacggtcaa cctgagcaac cgacgacagt      1380
     atctgtggac gttcatcatt gccgatgttc ccacagctat actcggtatc gatttcctac      1440
     agcactatga attgctagtc gattcacgta ggctgcagct aattgatact tcgtcgaaca      1500
     gcaactttat gggctctaaa gcccacacaa acgcgtaccg aatcacaggt gtatttcatt      1560
     cgcgtgacga tttattccac gttttatttc agaaattccc caaattaact aaacctctcg      1620
     aggagactcc atcggtgacc aatcgtgtgg tacaccacat agtcacccgc ggaccaccag      1680
     tcacggcaag acctcgccga ctggcaccgg acaaattagc tttcgctaaa cgtgagtttg      1740
     acaatttact agctactggt attattcgtc cttctcacag tccttgggcc tcacctctcc      1800
     acatggttcg aaaaaaggat ggggttagtt ggagaccatg cggagactac cgagcgttaa      1860
     acacagctac acgtttcgat agctatccca tcccccacat acatgacatc acggcatcac      1920
     tcaagggcac gacaattttt tccaagatcg atctggtacg agcatatcac cagatcccag      1980
     tcgctcttga agatatagag aaaactgcta tcacgactcc tttcggttta tttgagttcc      2040
     tacgaatgcc atttggatta cggaatgctg ctcaaacttt ccaaaggttt atcgatagca      2100
     ttgtacgaga cctagatttt gttcacgtct atattgatga cctgctaatc gcatcatcaa      2160
     acgtagatga acattatcaa cacatgacgc tactattcca gcgcctttcg gataatggaa      2220
     taatagtcaa ccccgataag tgtgaactcg ggaagaagga aatgaaattc ttaggtcatg      2280
     ttattaagca tgagggtatt ctaccttgtg aggataaagt acgtactata atggagtaca      2340
     ctgtaccgtc cacactcaag gaactgaagg catttctcgg tttggtcaac ttctaccgac      2400
     gcttcatttc gcacgcggca gaacagttac gaccgttaac cgatttactt cgcggtaatc      2460
     cacgcaaact ggaatggaac gacgccgcac gtactgcatt ttcagatatc aaaacggccc      2520
     tagctcaagc cacacttctc gtgcatcctg acccatcggc cacgcttagt atagcggttg      2580
     atgcatcgga tttcgccata ggagccgtta tgcaacagaa tatctccggt agttggcagc      2640
     ccctcgaatt tttctcacga cgcctcactc ccacggagac gagatatagc gcttttggtc      2700
     gcgaactgct agcagcctac tgcgccatca aacatttccg gcacgctgta gaaggtcgta      2760
     agttcatctt attcaccgac cataagccct taacgtatgc tctgcatacc aagtctgacc      2820
     gctactcacc acgagagtgc agacatttgg actatatctc ccagttcacg acagaccttc      2880
     gtcacgtcaa aggcgagtcg aactgtgttg ctgatgcttt atcacgtatc caactgaatg      2940
     cagttacttt gccagtgctc gatctacctg ctatggccgc cgcccaagca aacgatactt      3000
     catgcacgga agcacaacag tctacgtccc ttcaatgccg ggaagtaccc ctagctacta      3060
     gctctggtac tatcctatgc gatacttcca cgggcctccc tcgacccatc gtaccctccg      3120
     cttatcgccg tctcgtcttt gatgcccttc atggtctatc tcatcctggt atcgcagcca      3180
     ccctacgcct catagctgca cgatacgtct ggccgtcaat gaataaagat gtccgtatgt      3240
     gggtaaaaca atgtttacaa tgtcaacgat caaaagtgca caggcacgta gctgccccta      3300
     ttggcacttt cgctacgcct gatgctcgct tcgatcacgt tcacatagac attgtaggac      3360
     cattaccacc atcgcacggg tatgatcaca tactcacatg cattgatcgt ttcacaagat      3420
     ggcccgaagc tattcccatc acgtctatta cggcggagac agttgctcac cgcttcgtag      3480
     aacgatggat agctatgtac ggttgtccct cgactgtcac gactgaccga ggacaacaat      3540
     ttgagtccgc attattctcc tcactaacac ggctgcttgg tacggaacgc atacgcacta      3600
     ccgcctacca tccagcatca aacggtttag ttgaacggtt tcatcgccaa cttaaaagtg      3660
     ctcttcgagc acacgaaaac aacaattggt acgaaaccct tccgctcgtc ctcctgggaa      3720
     tcagaacgag tctaaaggca gatattcaat gttccgccgc tgaacttgtt tacggcacga      3780
     cattgcgtct gcctggggaa tttttcacac cacggagcag cactaagttc ggcgaatcag      3840
     actacgtcca acgactgtct gcattcatgc gaacactgac tccggtgtca actcgtatac      3900
     aacatcgaca ggtcgctctc cctcgagagt tatctacctg ttcacatgtt ttcatacgag      3960
     tagattcggt acgcaaacct ctacaacagc cttacgaagg accttttcac gtgatttccc      4020
     gtcacgaaaa gaccttcaag gttgatcgac gtggccgcat cgaaacagtc agcattgatc      4080
     gtctcaagcc agcacacgtc gatgacagtg ctatacctga taagccgaga cccaatgtta      4140
     gacccatcag agcttctagc gggatttcta catctacttc ggatcccacg ctagatgcac      4200
     ctaagacctc attctcacgt cccagtcaac agcacgtgtc atctgccccg tctacggacg      4260
     agacttccgt ctcacgtcca gacctgcaga ccacaccgcc cttgactgcg gatgagattg      4320
     caggctcacg atgttcgaac gagactaccg tctcacgttc cggtcgccga gtacgcttac      4380
     ccgtacgctt tctcgactaa cctcataacc aactacggat acagtatagg aatctacccc      4440
     tatactacac gaaagctaca cttttctctt tttctttcat gtttttttgt ttaccccgag      4500
     cctacgcctc tgaccatcgc tgttctggta tcgtcgactt tagtcaatct tggcgaaagc      4560
     tggcctgatc acccacgcta tagtcaacgc actcagtcga tctctctgac tccaaatacg      4620
     tatgatatac atttggtccc gaacatggtt atcctggtcg catctggttc cttggctcaa      4680
     tctggtttcg tcctacgtct gcagcgtttc tggtccggac ctctacgaac gcaaccttca      4740
     gattctggat acaaaccact ctggtgtagc atgctaatcc aagcaatcaa tacggcacgt      4800
     tccttctggt accgttctac gtcaaagact tttggtggca actcgaggat caacgatcac      4860
     tccctgttct gccaacgttt tcgtcctaca attgcacgtt tcgcgatcag tcccacgaat      4920
     gaaaccgcta cgtatcgaaa gtgtaaatcc tttctagcgg ggggctcctg tagtgatcgg      4980
     ccagtttcga taagaacacg attggaataa tagaaacaat tattattatt gtaaccaatt      5040
     gtaccagaga ttgttttact gtatttgttt aactgtatcc gtttcacttc ttgttccata      5100
     taccgccttg tttggttcga gcttgctcac gcactgctta ttcgcttgta ctctttggca      5160
     cgtctcggta ttatttcgat accacgagat cgccaataaa tatacttgat ctggact         5217
//
ID   FW_DM       repbase;    DNA;    INV; 3520 BP.
XX
AC   M17214;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.melanogaster Fw repetitive element.
XX
KW   Repetitive element; DMFW; FW_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3520
RA   Di Nocera P.P., Casari G.;
RT   "Related polypeptides are encoded by Drosophila F elements, I
RT   factors, and mammalian L1 sequences.";
RL   Proc. Natl. Acad. Sci. U.S.A 84, 5843-5847 (1987).
XX
DR   GenBank; M17214; Positions       1    3520.
XX
SQ   Sequence 3520 BP; 1203 A; 940 C; 615 G; 762 T; 0 other;
     tgaaccagaa aacaagcctc ctagaaaaaa cgaggttcac ccaatttaca aactccagct        60
     ccttttgcac cgtaggatca cggtagaaga gccgcacaaa cgcaacgctc ctgtacaatg       120
     tacaaactgc caagagtatg gccacacgag gtcatattgt acacttgccc cggtgtgcgt       180
     agtctgtgga gatctccacg actccaaaca gtgtcaaatt aacaaagaaa atgcatgcga       240
     gaaaaaatgt aataactgcg ggggcaatca cacagcaaac tacagaggct gtccaatcta       300
     caaagagctg aaaatccgtc ttcacaaaag aatgaacacg gcgcgggtac acaaggatca       360
     gctaccctga taccatcaga gacaaatcct gaagtaattt tctcgaaagc agctagtttc       420
     gctccctggc ctacattcaa cactaacaaa gacaacattt gctaacgttt taaaatcagg       480
     tatgacgcct ccaacccaaa actcccgaac tccacatgaa gtgcacacaa aattagacac       540
     acaacaaaac tatcacccag ctgcgcagca ggaaacaaaa actgaagcta tgatgcaagc       600
     cttacaacag agcatgatgg aatttatgac atttatgaag accaccattc aagacatgat       660
     gcgtaatcaa aaccttttga tacaaatgct tgtagcccaa caatcaaata aataatggct       720
     accttacgca tagctacgtg gaacgccaat ggcgtctcac agcgcaaact tgagctagct       780
     caattcctac atgagaagca tatcgacgta atgcttcttt cggaaactca tctcacaagc       840
     aaatacaatt ttcaaataag agactaccat ttctacggta caaatcatcc cgacggaaaa       900
     gcacacggtg gcaccgccat actcataagg aaccgtatga agcaccactt ttacaaagaa       960
     tttgcggaaa atcatcttca ggccacatct atcaacattc agctggatga caacactctc      1020
     cttacactag cggccgtata ctgccccccc cgtttcacag tattagaagc tcaattcctg      1080
     gatttcttcc aagcactagg gccacacttc attgcagcag gcgactacaa cgctaaacat      1140
     actcactggg gatcgcgact tgtgaaccca aaaggaaaac agctttataa gacgataata      1200
     aaagccacta ataaacttga ccatgtttcc cccgggagtc ctacatactg gccatcagac      1260
     ctcaataagc tgccagacct gatcgacttc gcagttacga aaaatatttc ccgcagtttg      1320
     gttaaagctg aatgtctgcc ggatctctca tctgatcact cgcctgtact aattcacctc      1380
     cgccgatacg cagaaaacgt gaaaccacca accagattga cctctagcaa aacaaactgg      1440
     ctcaggtata aaaaatatat aagttcacat attgagctaa gcccaaaact caatactgaa      1500
     tctgatatag agagctgcac gtgtgcattg caatccatcc ttactgcagc agctcttact      1560
     gcaacaccca aaataacaaa taatacaatt aattcaaaaa agaccaacgt acaaatcgag      1620
     caactcgtcc acgtaaaacg tcgcttacgc agagaatggc aatcttccag atccccaact      1680
     gcaaaacaaa agctaaaagt agccacacgg aaactggcca acgctctgaa acaagaagag      1740
     gacgacgatc agcgccgata catagagcaa ctcacaccaa caggcacaaa acaaaagtca      1800
     ctgtggcgag cccactcaac tcttcgccca ccgactgaaa ccgttttgcc gataaagaat      1860
     tcatcaggtg gctgggcccg tagtgatgaa gacagagcca acacatttgc cgctcaccta      1920
     caaaatgtgt tcacgccaaa ccaggctact agcacattcg cgctaccgtc ctatcccgta      1980
     aaccgccatc agcaacacac cccaattgtg tttcgtccta aagaaataac taaaataatc      2040
     aaagacaatc tcagcccgaa aaaatccccc ggctacgacc ttataacacc ggaaatgatc      2100
     atccagctgc cacattctgc agttcgctac ataaccaagc tctttaatgc catcaccaaa      2160
     cttggttact ttccacaacg atggaagatg atgaagatca taatgattcc aaagcctggt      2220
     aagaaccaca cagtcgcttc atcttacaga ccaataagtc tactctcatg catttcgaaa      2280
     ctattcgaaa aatgcctgct gatccgactt aatcaacatc agacatacca caatataatc      2340
     ccagcccacc aatttggatt tcgcgaaagc cacggaacca ttgaacaggt gaatcgtatt      2400
     acaacggaaa taagaactgc atttgaatat cgcgaatact gtacagcagt atttttagac      2460
     gtatcccaag cattcgacaa agtctggctc gacggcctaa tgtttaaaat taaaatatcc      2520
     ctacccgaaa gcacacacaa acttctaaag tcttacctct atgacagaaa gtttgcagtg      2580
     cggtgcaaca ctgccacttc cactgttcat acaattgagg ctggagtccc ccaaggcagc      2640
     gttcttgggc caaccttata cctcatctat acagccgaca tccctacaaa tagtcgctta      2700
     acggtatcca catttgccga cgatacagct atccttagcc gttcaaggtc ccctatccaa      2760
     gctacagcac agttggcact gtacctcatc gacattaaga agtggctctc tgactggcga      2820
     ataaaagtaa acgagcaaaa atgcaagcac gtgacgttta cgctaaacag acaagactgt      2880
     cctccgctct tgttgaacag cataccactc ccgaaagcag acgaggtaac gtacctagga      2940
     gtacacctag acagaagact cacatggcgc aggcacattg aagccaaaaa aacccaactt      3000
     aaactcaaag ccaacaactt acactggctc atcaactctg gttctccgct cagcctagat      3060
     cacaaggtct tgctctacaa ttctatattg aaaccaatct ggacctatgg ctcacagtta      3120
     tggggcaatg ccagcaacag caatattgac atcattcagc gagcacaatc aaagattctg      3180
     agaaccatca ctggggcacc gtggtacgtt cggagtgaaa acatccaaag agacttaaat      3240
     atcccatcag ttaccaacgc aatcacggaa cttaaggaaa aatacctata gcaagcttca      3300
     cacgcacccc aaccacctag cgcgaggtct aatccagctc agcagccgtt cccgtctccg      3360
     gcgaaaggac ctaccaaccc agcgaataaa ttattaggcc gtttaaacat agacagttgg      3420
     aaaaataata caactgttca aaaaatactt gttatagtta agatttttaa acttattgtt      3480
     agttcttata caagaagatt caataaataa aaagcaaagt                            3520
//
ID   MARINER47B_CB repbase;    DNA;    INV; 1082 BP.
XX
AC   .
XX
DT   07-DEC-2004 (Rel. 9.11, Created)
DT   21-SEP-2005 (Rel. 9.11, Last updated, Version 2)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; 3bp TSD; Cb000028;
KW   Cb000211; DNA; MARINER47B_CB; MARINER47_CB;
KW   mariner/Tc1 superfamily; MARINER52_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   219-1076
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-1082
RA   Pavlicek A., Jurka J.;
RT   "MARINER47_CB - a family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Direct Submission to Repbase Update (NOV-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are ~85-95% identical to the consensus.
CC   Contains ~14bp-long imperfect TIRs and is flanked by TNA target
CC   duplications from the C|TNA|G target motif. MARINER47B_CB is
CC   a subfamily of MARINER47_CB.
XX
SQ   Sequence 1082 BP; 332 A; 186 C; 196 G; 368 T; 0 other;
     caagggaagg ttttttagac aacggttgag aatttgctca aaatttgcat acttatagtt        60
     taagacatgc tctatacgat gacgaaaaaa tttttagccc gttctcactc ccaggccgaa       120
     aaactttgtc tgaaaatttg ggccgatttc ggtgcgctgg ggatttcggc ttccccttcc       180
     ctcctctacc aattccgcgt gagaggaaaa tatcggttgt gtggtgttgt ggtaagaggg       240
     tgactcatta ggattgacta tgctggttcg acccccactg tggtaaaact ttttttgcat       300
     tttttgaaac taatttttga ttccaagttt gcccccctag gcactatatg acactttttg       360
     attaatttca aaagttttca aagaaaaaaa gatttcatga gagtttgagg aaaaaataga       420
     taatggtctt ttcgaccggt tcttacatcc tcgtatcgtt aaaaacgaaa atttcagtct       480
     ctgaaagttg ctcaattttg ctctttttga ggtggagtac tgtcaaatcg atcacataca       540
     agattcgaac ctatttctat aggtttcagt taagttcaag cgatatttca gaaattagga       600
     actgtcaaag ttctaacaac aatcagattt tggagatttt ttgagcccaa agacaacatt       660
     gggctgaaaa aatttgtcag aatgctattt ttatcgtttc tgaataattg gaacgttttt       720
     tcgcactttt caaaaaattt tcaaaaaatc attttcaaag tgtggggacc ccatggtgat       780
     ttttttcaaa atttttcaaa aaaaattttt ttttgaaaat gtttaaaagt tactttagaa       840
     gatagaaaaa tgtccaaaaa tgagtttcgc actcaagcaa atcctgaaaa actaattttt       900
     aacctcgaaa aatgcatgtt tttggccaaa atttagtact aaaagcactt tcagaggcca       960
     tatttcggct ccttttgaga acgggctaaa aatttttttg gattcggatt cagcatgttc      1020
     gaaagtacct ttgtacaaat tttgagcaaa ttctcaaccg ttgtctgaaa aaccttccct      1080
     tg                                                                     1082
//
ID   Transib5_AA repbase;    DNA;    INV; 1033 BP.
XX
AC   .
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Transib5_AA is a DNA transposon, a partial consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; DDE-class;
KW   TRANSIB superfamily; Transib5_AAp transposase; TRANSIB4;
KW   Transib5_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Culicinae; Culicini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1033
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 Core and V(D)J Recombination Signal Sequences Were Derived
RT   from Transib Transposons.";
RL   PLoS Biol 3(6), e181-e181 (2005).
XX
CC   [1] (Consensus)
XX
CC   Transib5_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib5_AA encodes remnants of the Transib5_AAp transposase.
CC   The transposase is not perfectly recovered due to available
CC   sequence data.
CC   Conceptually translated Transib5_AAp transposase:
CC   XKQFSSKKPFVLPNSIELHLPSTSGGSKGRKKIPFQDSSDCVKRRKTAMLRATHNADELSYAATMKLREE
CC   GKRAQASVLQMATQSSPSHVAHLLNTSKISAKFDIVPYTPDEALALICNAKLTLSQYKELRINAKDRNAD
CC   LYPSYKKVLEAKKRCYPEDAAITINDTEMDIKLQALLDHTAHRIVLANSDNLINFSDEELKYITLITKYG
CC   FDGNSGVSQFKQTFTGDDGTKSDGSIFITSVVPIQATGHSKTLFKNPRPSSTRYCRPLRIQYTKENTELI
CC   LAEKAYLDDQISALKPSTVEHMGRTIIINHKLLITMVDGKVCNALTSNKSSQRCLYMWCNAFADEX.
XX
SQ   Sequence 1033 BP; 346 A; 215 C; 192 G; 280 T; 0 other;
     caagcagttt tcttcaaaaa aaccatttgt cttgccaaat tccattgaat tgcacctgcc        60
     ctccacttca ggaggctcta aggggaggaa aaagatacca tttcaagata gctctgattg       120
     tgttaaaagg cgaaaaactg caatgttaag agctacgcat aacgcagatg agctttctta       180
     tgcagcaact atgaaacttc gcgaagaagg aaaacgtgca caggcttcag tattgcagat       240
     ggctacccaa tcaagcccaa gccatgttgc acatttactt aataccagta aaatttccgc       300
     caaatttgat atcgtaccat atacacctga tgaagcatta gcacttattt gtaatgctaa       360
     gcttacacta tcgcaatata aagagttgag aataaatgct aaagatcgta atgccgattt       420
     gtatccttca tataagaaag ttcttgaggc gaaaaaacga tgctaccccg aagatgcagc       480
     tatcaccatc aatgatactg aaatggatat caaattacag gccttgcttg atcacacggc       540
     acaccgcatt gttctggcca attcagacaa tttgattaac ttttcggatg aagaattaaa       600
     atacattacc ttgataacca agtatggttt cgacggaaat agtggtgtat ctcagtttaa       660
     gcaaacattc accggtgatg atggaacgaa gtctgatgga agtattttca ttacttccgt       720
     agtaccaatc caagcaacag gacattctaa aactttattt aagaacccac ggccgtcgtc       780
     tactcgctat tgcagacctc tacgtattca atacacgaaa gagaacacgg aactgatttt       840
     agctgagaaa gcatatctcg atgaccaaat atctgcttta aaaccatcaa cagttgaaca       900
     catgggacgc acaatcatca tcaatcataa gcttttgata actatggttg atggaaaagt       960
     atgtaacgct ttgacatcga ataagtcttc gcaacgctgt ttatatatgt ggtgcaacgc      1020
     cttcgcagat gaa                                                         1033
//
ID   TIR23T5B_CE repbase;    DNA;    INV; 1658 BP.
XX
AC   .
XX
DT   14-SEP-1999 (Rel. 3.8, Created)
DT   14-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   TIR23T5B_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   Non-autonomous DNA transposon; TIR23T5B_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1658
RA   V V., Jurka J.;
RT   "TIR23T5B_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   TIR23T5B_CE is flanked by 23 bp-long terminal inverted repeat.
CC   There are about ~25 copies of TIR21T5B_CE in the genome; they are
CC   ~98% identical to the consensus sequence.
CC   TIR23T5B_CE generates 5 bp long duplication of target-sites upon
CC   its integration in the genome.
XX
SQ   Sequence 1658 BP; 569 A; 266 C; 276 G; 546 T; 1 other;
     cacagcgcct caaatcggga gagttaagaa aatcgagaat tggaaagtcc aacggagcgc        60
     gcttgcacac ttttacggta ttaaatgagt ttcagacgaa atttcgcgat tattcgagtt       120
     ttcaagatga aatttggaaa aaataattaa atattgggat tattattgct ttaaaaaagt       180
     tttaaaaaac attttattga acaaattcaa gatttggctg ctttttcatt gattttcgaa       240
     ccgactagaa caagttaact ctatgacaaa atttctacgc gaaacaaatt ttttcaagca       300
     ttaatatgtt tgattccaat ttttaaacgt cagcttgata gaaataacac ggtttcacgt       360
     cttgaaattg ttcaaaaatg cccacatcaa cggaaactgt ttagttggca gctgatcttc       420
     actaaaccaa cactaaatgt tcagatcaaa tcacaacttg tttgatcatt tgaaaaaaca       480
     tttttgaatc attgtttccc acaaaaagca gatgataagt agtatagcat gatgagaatc       540
     catatgattc ttcatatgcg catagctata gatactgtat cttcgacaac tcctatctcc       600
     tcagagakgc aagatatcaa aaagtgatta actaagaaat tgtagaacat atcaaaaact       660
     atactaatta attaaaatca tgtgtttatc tcttaagatg agggagttag agcagccagt       720
     agaataacaa aaagtatgca atacaaatgt acgtctaact cccccatctt gaaagataaa       780
     aacgtaggtt aaattgaata tcatagtttt tgatgtgctc tacaagttct cagttgatca       840
     ctttttggta tctcacctct ccgagtagat aggagttgtc gaagttgagg tatctagagc       900
     cgtagagggt aggaagaacc tgatggttcc ttattaagga aaagaaaata taacacgaaa       960
     cttgtaaaaa atgttaattt gatcatttat gtgagtattt gagccatttt ttaaggaaaa      1020
     ttggagagca acacttacat aagaaatttg gcgtggcata gatccattgg tagattggaa      1080
     cattgaaatt tgatcagaac tatttgtatt tttagtgatt ttgattgatt tgtagcttta      1140
     ttctagtgaa atctttgatt tcataaaagt tttttaacca attttgcaag atttcccttg      1200
     ataaatgttg ctttactttt ttatcgattt cgttgtaaag aaaaatcatt tttctgtgtt      1260
     atcagtcaaa ttaatgacta aaactcttta aaaagattca aactattagt aaaaattcta      1320
     aaattgaata tttatgcaat aaattgctct aaaatcaatt tttatttgca aaattctgtt      1380
     tttggtcaaa aaaaattttc agattcgccg aaattcagag ctcatttcga gcttatttgg      1440
     ggaaaaattt atattaaaat gaagtaaatc gcatcgcgaa cagtctctgg gcggtcccgc      1500
     atgttgaaaa ttgctttaaa atccctaaaa tccagcaaaa acgcgatatt ttactgtttt      1560
     gctacacatt aattccaatt cgtgcgacgt ctgcagcaaa cgcgctcccg cgccaaaacc      1620
     acttctttag ctcttctctc ccgatctgag gcgctgtg                              1658
//
ID   NDNAX1_CE   repbase;    DNA;    INV; 2087 BP.
XX
AC   .
XX
DT   12-NOV-1999 (Rel. 4, Created)
DT   12-NOV-1999 (Rel. 4, Last updated, Version 1)
XX
DE   NDNAX1_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   nonautonomous DNA transposon; DNAX family; NDNAX1_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2087
RA   Kapitonov V.V., Jurka J.;
RT   "NDNAX1_CE.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   NDNAX1_CE is a putative non-autonomous DNA transposon;
CC   its copies are 98% identical to the consensus sequence.
CC   It shares common termini with NDNAX2_CE element.
CC   These elements do not have terminal inverted repeats;
CC   It is possible that NDNAX elements share a common
CC   mechanism of their transposition with the ATREP1-ATREP10
CC   elements found in the A.thaliana genome.
XX
SQ   Sequence 2087 BP; 600 A; 402 C; 376 G; 706 T; 3 other;
     tctgccttct tcctatgtta aatatggaat gtgcaagggt cgtcactttt tgcgcacaaa        60
     gtgtcacaaa aaattaaaaa agttgggtgt gcactttcgt gtctaacttt gctgtacctg       120
     cacatttttc aattttcttt tttgtaggaa atagagaatc gctttttcta tcttyctatc       180
     taaatggtta tttgatttga ttttatcttt taagagaaat tcttgatgaa acacgaaaaa       240
     atcacttttt tcgcgtgtcg tgtcgctttt tttgcacacg tttagaggtc atagtataaa       300
     atgtttttga taaggtaact gtatatctgg gattgttaaa aatttttagt ttttgcaatt       360
     tcatcaattt tgaactgagt tatgatgatt tgaaaatcgg actcgaaaaa tcccggaatt       420
     tcgaaaattg cgttgaaaac atgtttaacg ttcgtatttt tgttttattt tacattatca       480
     aatgtaaatt ttaacgtaga ttccgttttt ctaaatagtt ttctcattat ccaaccggaa       540
     agttacgaaa aaagcataaa ttgacgattt ttcaatgaaa ttgtgcgcat tcccccttgt       600
     gtttttggtg tgcaaattag tgatttttga gattctttcg cctataagtc ggtcagtttg       660
     gcactttttg gggtaaattt ttcgaaaaac gtatttttca ggaaatttac tcttcaaaaa       720
     tataattttt tttacaaaaa agtcaaaaat aacttcagaa atcgcaaatt tcatgatttt       780
     ctcaaaawaa tgacgttttt gctggaaaaa taaaaaattt tccactaccg aatgggattt       840
     tatgttaaat tcgtaattag tacataaata ccgaatgcaa gctgaaagca cagctctcta       900
     cgatcatttt caacgatttt agtttattta atttttgacc tcgaaatttc aatttccctc       960
     ttttcctgga ccagtttttc actgaaatgt gaatgttatg tcctaaatct tattattttt      1020
     gctatgagaa gcgagacaaa ccaaaaaatt ttagtcttga gttcctcgag ccgcgttcct      1080
     gaagttgtgg gcttcaagcc ttgctcagga agctcaaaag ttcattcttg accaattttt      1140
     aaattttcaa atgctataat attctacttt taacgctgat ttcaaatata tacttttctt      1200
     tttccaattc ctattatgag ctgagttacg gcgctttcaa gtttcagcaa tgcccgcccg      1260
     cccccctctt tcctcccctt tctcttgcct cctccctctc atgcataggg tggctgtaat      1320
     atggtctcta attactgtta caggatcaga tatgtatatt ttacgacata tctcttaata      1380
     gaagaacaat agacatcgcc acatttgttt ttgtaagagg tccccaatgg gctgtaaaac      1440
     agtctatcca cctttcttcc tgcaagaaag gaggtaatgt atttgagact gttcatttat      1500
     tgtaattgag gggttgaaaa ttattatttt aattttcaaa taaaaataca ttaaaatttt      1560
     tttttaattt taaaataaaa aaatcctttt taattttaaa ataaaacatt ttttaatttt      1620
     gaggtctgct ttcttcgcgg ggacagagcg ccgtaggcgc tcttaatcta aattataggc      1680
     agagcaggcc gaaggcctgc tatgccagta ggctttcact gccgggtcag agcgccgcag      1740
     gcgctctgaa tctaaattac aggcagagca ggccgtaggc ctgctatgcc agcctgcttt      1800
     tactgccggg tcagagcgcc gcaggcgctc taaatctaaa ttgtgtactg cagggagaca      1860
     ataaatattt ttaaaacagt aaaaacaaac acacaggttc gaggcgaagc cgagaacctg      1920
     cgccagctac ctaatctggt agaggaagca acgcaggccg caggcctgcg gtgcgagacc      1980
     maaaacattg ccaatcgcac gttcgaggcg aagccgagaa cccgcgccag ctagcggact      2040
     cgccccaacc ccacctctac tagcgggccc catagggccc gctagtc                    2087
//
ID   Transib2_DP repbase;    DNA;    INV; 3032 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib2_DP is a family of autonomous Transib transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; transposase;
KW   Transib2_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3032
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology0-0 (2005)in press.
XX
CC   [1] (Consensus)
XX
CC   Transib2_DP is a family of autonomous Transib transposons. The
CC   consensus sequence encodes the 704-aa Transib2_DPp transposase
CC   (pos. 270-288, 543-2638). Transib2_DP elements are characterized
CC   by CAWTG target site duplications and 38-bp terminal inverted
CC   repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(270..288,543..2635)
FT                 /product="Transib2_DPp"
FT                 /translation="MENEDKGKFEFLHSDLIDIWRNNNRQKKSVSHWIYSK
FT                 INNNHLENEKKREIDKKISNFESFIKRNLLKCNKMMERFMTTHAKWMASKI
FT                 TIIVDENCKTPKKMGRPTLHYTNAGTRLKRKLASDLANDNNNNTNLLMHAA
FT                 AVSAKKERKTDVAFVVTKTIRTPEYPTESKKHLQLQKPIPLSPDEALAYLL
FT                 ENSLNKQQYTNTRLLNKRHNCDIYPSYNKVMEAKLQCRPECIEVMETTARV
FT                 PLQNLLDHTAHRIIKLQSDVFKQFPDASENKLICSYGFDGSTGHSIYKQKF
FT                 LTEIPGSQLSDHSLFVTSVIPIQITDTYHRNIWTNRTPQSIRFCRPLKIDL
FT                 VKETTAHIIIEKKDLDFQINTLKPFVYKLVENVDIVVTYEMHMTLIDGKVL
FT                 NVLTGTKSTQCCPICGVTPTKVLEITDLSSETFTPKLGALKFGVSPLHAWI
FT                 RFLEFVLNISYRIEIQKWHIKGDNKIKTSIRTKYIQEKIWEDMGLRISMPK
FT                 QNGNGNSNDGNTARRAFANTKLLSSITNFSVALLNNFHIILIAISCNYYIN
FT                 SEKFRSFCESTFCLYMQTYPWYPMSPTIHKVLVHGFQINNSTLVPLGCLGE
FT                 NASEARNKMYKKDRLSHARKNSRVNTMTDIFYRAIDSSDPLLSSVCLKERE
FT                 RKNKKKPLSKEVLSLLELPSTESKDSCEYENDSQSDSDSDYNIYDIELEEE
FT                 DEVI"
XX
SQ   Sequence 3032 BP; 1127 A; 486 C; 532 G; 887 T; 0 other;
     cactatggtc cagaattcgt tttttttggc ataaagtcga aatttttatg tgaatggatt        60
     acgttttttc ttgcaaattc tcaaagtaaa ttcatcatac atattaaaaa tgaaaaaaaa       120
     aaaattattt agcttccctg aagattttgg cgagcttttg aaagtgaaca atcgatcagg       180
     tgattgtggg aaaaaaattg gcgccaaatt acttgtttac atttttacgt ggcgaccgag       240
     taaatttgct caaataaatt cggctaaaaa tggaaaatga agataaaggt atgtagtatc       300
     taatgtattt agttatttta tgtgtagtcc caagatttaa gtgttgtgca atgtccaatt       360
     tatgtgtatt tttgtagaaa atttaactgc gtcccctgtg tttcgtagaa tataacaaat       420
     gaactgagtt ctgctgagaa aaactaacta tgtgagtttg tacctacaaa tgttgtaatt       480
     gactggaaag taacaacttt ggcccgtttt ggcccctttt ctttaaattt gttaatattc       540
     aggaaagttc gagtttttgc atagcgatct catcgatatt tggcgcaaca acaatcgaca       600
     aaaaaaatct gtctcacatt ggatttacag taaaatcaat aacaaccatt tggaaaatga       660
     aaaaaaaaga gaaatagata aaaaaatcag taattttgaa tccttcatta aaagaaacct       720
     tctgaagtgc aacaaaatga tggaacggtt tatgaccacc catgctaaat ggatggcttc       780
     taaaataaca attattgttg atgaaaattg taagacacca aagaaaatgg gacgtccaac       840
     attacattat acaaatgcag ggacaagatt aaaaaggaaa ctggcgtctg atcttgcaaa       900
     tgataataat aataacacga atcttcttat gcatgctgcg gcagtttctg ctaagaaaga       960
     acgcaagacc gacgtggctt ttgtcgtaac aaaaacaatt agaacacctg aatacccgac      1020
     tgaatcgaaa aagcatcttc aattgcaaaa gcccattcca ctttcaccag atgaagcttt      1080
     agcttacctc ctggaaaatt cactcaacaa acagcagtat acaaacacta ggcttttaaa      1140
     taaaaggcat aactgcgaca tttatcctag ctataataaa gtaatggaag ctaaattaca      1200
     gtgccgacca gagtgcatag aagtaatgga aactactgct cgagtgccat tacaaaatct      1260
     tttggatcat acagcacatc gaataattaa attgcagtcc gatgttttca agcagttccc      1320
     ggatgcatct gaaaacaaat taatctgcag ctacggattt gatggctcaa cgggtcatag      1380
     tatatacaag cagaagtttt taactgaaat acctggcagt cagctttccg atcattcttt      1440
     atttgtaact tctgttatac ccatacaaat tacagacacc tatcatcgga acatctggac      1500
     aaatagaaca ccgcagtcta ttagattttg cagaccgcta aaaattgatc tagtaaaaga      1560
     aactactgcg cacataatta tagaaaaaaa agatttagat tttcaaatta acactcttaa      1620
     accctttgtt tataaattag ttgagaatgt tgacatagta gttacctatg aaatgcatat      1680
     gacacttata gatggaaaag tgctgaacgt attaactgga actaaatcta ctcaatgttg      1740
     tccaatatgt ggggtcaccc cgacaaaagt attggaaatt acagatctta gttcagaaac      1800
     ctttacccca aagcttggag ctttgaaatt tggagtaagt ccattacatg cttggatccg      1860
     gtttttagaa tttgtcttga acatatcata cagaatagag atacaaaaat ggcatataaa      1920
     aggtgataat aagataaaaa cgagcattcg gacaaaatat attcaggaaa agatttggga      1980
     agatatgggt ctacgtataa gcatgccaaa gcagaatggc aacggaaata gcaatgatgg      2040
     gaatacggca agaagagctt ttgcgaacac taagctacta tcatccataa ccaactttag      2100
     cgtagccctt ttaaataatt ttcacataat cttaatcgca atttcgtgta actattatat      2160
     aaattcggaa aaatttcgtt ctttttgtga gagtactttt tgcttatata tgcaaacata      2220
     tccgtggtac ccaatgtccc ctacgattca taaagtatta gtccacggtt ttcaaataaa      2280
     caattcgacg ttggttccac ttggatgttt aggagaaaat gcttcagagg cacggaataa      2340
     aatgtacaaa aaagacagat tatcacatgc aagaaaaaat agtcgggtaa atactatgac      2400
     tgacattttt tatagagcga tagattcctc ggatccatta ctatcgagtg tctgtttaaa      2460
     ggagagggaa aggaaaaaca agaaaaagcc tctttccaaa gaagtattaa gccttctgga      2520
     gttgccgtct accgaaagca aagattcatg tgaatacgaa aatgactcgc aatctgattc      2580
     tgattctgat tataatatat acgacataga actagaagaa gaagatgagg tcatttaaga      2640
     aaaaaattag tgtgtaataa atttccatag tttatatata aatattgata atttgaaata      2700
     agatattata tatgtataat gatttaacaa caaaatgtaa taaatttgaa gtatgtaatt      2760
     taaacttccg actttatgca aaaaaaaaaa acaagaacaa gtacaagtat acaagtatat      2820
     gtacaaaatt taaaagctct agctttaatt tcgagctctg tgttaaacaa atctgaggtg      2880
     ctctggggaa gggggtcgat ggcgtggtcg aatctaaaac aaaaaaaaaa ccgaaatttt      2940
     ataaaaatac tcaaaataat tgtgcaaagt ttcaaggctc tagctttaaa actagacttt      3000
     atgccaaaaa aaacgacttc tggaccatag tg                                    3032
//
ID   LYDIA_LTR   repbase;    DNA;    INV; 300 BP.
XX
AC   AF177773;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   LYDIA_LTR is a long terminal repeat from LYDIA, a gypsy-like
DE   endogenous retrovirus.
XX
KW   LTR Retrotransposon; Interspersed Repeat; endogenous retrovirus;
KW   LYDIA; LYDIA_I; LYDIA_LTR.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-300
RA   Pfeifer A.T., Ring M., Grigliatti A.T.;
RT   "Identification and analysis of Lydia, a LTR retrotransposon from
RT   Lymantria dispar.";
RL   Unpublished.
XX
RN   [2]
RP   1-300
RA   Pfeifer A.T., Ring M., Grigliatti A.T.;
RT   "LYDIA_LTR.";
RL   Direct Submission to Genbank (16-AUG-1999)Zoology, University of
RL   British Columbia,.
XX
DR   GenBank; AF177773; Positions       1     300.
XX
SQ   Sequence 300 BP; 83 A; 57 C; 52 G; 108 T; 0 other;
     tgttatatat taatagtcca ggcagaccgc ggattcagca gcagttaata tgcattcatt        60
     attgtactac atcagcaatt acgcaagcaa tgcttcgccg ccgccctgtc gccggaatca       120
     gagctgacgc tgcagttgtc accgattgca tttacgtagt ttcataataa aatcgttcat       180
     tccatattca tacttcgaat aggttagatt aattagatct atgtaatttt tatatttaat       240
     taaataagtt tatagtaatt ttggtttttt ttcgatcctt tggctgccgc taacgtaatt       300
//
ID   hAT-1_DP    repbase;    DNA;    INV; 2699 BP.
XX
AC   .
XX
DT   24-MAR-2005 (Rel. 10.02, Created)
DT   29-MAR-2005 (Rel. 10.02, Last updated, Version 1)
XX
DE   hAT-1_DP is a family of hAT DNA transposons - a consensus
DE   sequence.
XX
KW   DNA transposon; Interspersed repeat; Autonomous DNA transposon;
KW   HAT; hAT-1N_DP; hAT-1_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2699
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-1_DP, a family of autonomous hAT transposons from Drosophila
RT   pseudoobscura.";
RL   Repbase Reports 5(2), 44-44 (2005).
XX
CC   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="hAT-1_DPp"
FT                 /translation="MSLIRKYSEIWNHFEEVGSQEAKCKYCKSILSCKS
FT                 QSNLSRHLKSKHPASMEPVIRQNTDGPIFVQSAQPKITSFAERPVPASK
FT                 AQQIDLQLVRMIAKGHHALRLVEEPEFKKFIHDVSHAPNYKLPTRKTLT
FT                 SSLIPKIRDEYTGTIIEELRAATAVCLTTDGWTSITNESYLAVTVHFID
FT                 EESTMLTSYTIACQAFEASHTAANLCSFLEKIVNEWDLKNKVAAIASDN
FT                 AHNIALAIRTGNWSHIRCFAHTLNLIVQKALDKMSSVRRKAKAISEYFH
FT                 RSSSGLKKLKDMQALLKLADLKLTQDVPTRWNSTYKMFERLSILKEAVV
FT                 AALSTRTDLILSPEDWDVIDGVLPVLKPFYEVTEEISSAEKNVTLSKII
FT                 ALTGLLQRKMAQIYPTVKNNLVAEVINEIINEMDGRFNDFEANILYAES
FT                 TVLDPRFKGRAFKSAEAFKKSVADINKKLAQTIRSLPEPPQEAISNKKQ
FT                 EEDTIWAEFDTTFQQVSQPTNNTAASIREMDKYLAEEYISRKDDPLVWW
FT                 NQRKAQYPLLYTYMLKRLCLVATSVPCERIFSSAGETIRKRRSLLKSTT
FT                 VENLIFLHNNMQIGSEYNLICT"
XX
SQ   Sequence 2699 BP; 838 A; 520 C; 547 G; 793 T; 1 other;
     tagtgttgtg ttgctcatga gtgagtgaac aaaaaagagt tgttcactta agtgagcaac        60
     tgaacatgtt ccttccaagt tgttcttttt tgttcacttg ttctttgttg ttcacttgtt       120
     cttttttgtt cacttgttct tttttgttca cttgctcttt tttgttcact tgttctttgt       180
     tgttcacttg ttcttttttg ttcacttgtt ctttgttgtt cacttgttct tttttgctca       240
     cttgttcttt gttgttcact tgttcatttt tactcacttg ttcattttta ctcacttttt       300
     gcgcaatttt gctcctcaaa gggcattttg cgatctggta gctttgctca tatttgcgtt       360
     tacttcacac tttttatatt acgggcaaag ctgtttacaa ttttgaaaaa ttcactatgt       420
     cgctaattcg gaagtatagt gagatttgga accatttcga ggaagttgga agccaggaag       480
     ccaagtgcaa gtattgcaaa tcaattttga gttgcaaatc tcaaagcaac ttaagccgcc       540
     atttaaagag caagcacccg gcgtctatgg agcccgttat ccggcaaaac accgatggcc       600
     cgatttttgt gcaaagtgcg caaccaaaaa taacaagctt tgctgaaagg cctgtaccag       660
     cgagcaaagc gcagcagatt gatctgcaac ttgtacggat gatcgccaag ggtcatcacg       720
     ccttgcgctt ggtcgaagaa ccagaattta aaaaatttat tcacgatgtg tcgcacgccc       780
     caaactataa gcttccgacg aggaaaacat taaccagctc cttgattccc aaaattcgtg       840
     acgagtacac tgggacgata atagaagaac tacgtgcggc cacagcggtg tgcttaacta       900
     cagacggttg gacatctata accaacgaaa gttatctggc tgtcacagta cattttatcg       960
     atgaggaatc aacgatgctg acctcctata caattgcttg tcaggccttt gaagcgtcgc      1020
     acactgctgc gaatctgtgc agctttttgg aaaaaattgt gaatgaatgg gatctcaaaa      1080
     acaaagtcgc agcaatagca tccgataatg cacacaacat tgctcttgct attagaaccg      1140
     gcaattggag tcatatacgg tgttttgctc ataccctaaa tctaattgtc caaaaagctc      1200
     tagataaaat gagcagtgtg cgcagaaaag ctaaagctat aagcgaatat tttcatcgca      1260
     gctcatcagg cttaaaaaag cttaaagata tgcaagcgct gcttaagttg gctgacctca      1320
     aactaacaca ggatgtgcca acacgttgga actcaacgta caaaatgttt gaacggctgt      1380
     ctatcctgaa ggaggcagtc gtggcagctc tgtcaacaag gacagattta attttgtcac      1440
     cagaagactg ggatgtcatt gatggagtgc ttcccgtatt aaagccattt tatgaagtta      1500
     cagaagagat ctcttcagct gaaaaaaacg taacattgtc aaaaataatt gctttgactg      1560
     gattacttca aagaaaaatg gctcaaatat atccaacagt taaaaataac ctagttgccg      1620
     aagtaatcaa tgaaatcata aacgagatgg acggcaggtt taacgatttc gaggctaata      1680
     ttttgtatgc ggagagcact gttctggatc ccaggttcaa aggacgcgca tttaaatctg      1740
     cggaggcctt taaaaagtca gtagcggata tcaacaaaaa attggctcaa acgatacggt      1800
     cactccctga acctccacaa gaagctataa gcaacaaaaa acaagaagag gacacaatat      1860
     gggctgaatt tgacaccact tttcagcaag taagccaacc caccaacaat acggcagcat      1920
     ccataagaga aatggataag tacctggctg aggagtacat cagccgaaaa gatgatccat      1980
     tggtatggtg gaatcagcgg aaagcgcaat acccgctact ttatacctat atgctgaagc      2040
     gcctctgctt agtcgccacc tcagtgccat gcgagcgcat attttcaagt gcaggcgaaa      2100
     ccatacgtaa aaggcgatcc cttttaaagt caacaaccgt tgaaaattta atttttttgc      2160
     ataacaacat gcaaatcgga agtgagtaca acctaatttg tacttgattg cttgtttgct      2220
     tgattaacat ttttttctct tatagcgcta aaatgaagaa aacgaaaagt ataagaattc      2280
     ctatgaaagg atctccttat ttttatgtta gtataagaat tcctatgaaa ggaaataaaa      2340
     agtttgtttt tttgttatat acattttttt tttgttttta gttataaatc tttgatgaat      2400
     attgaaatgt aacgtatttt atttgtktaa aagtctgtgg tgcttagggt tctgtgcatg      2460
     aatagtgaac aactgagcaa gtcagcaact gagcaagtga acaactgagc aagtgaacaa      2520
     ctgagcaagt gaacaagtga gtaactgagc aagtgaagaa ctgagcaagt gaacaagtga      2580
     gtaactgagc aatctaagag agcaagtgag caagtgagca atatgagtga gttgactcac      2640
     ttactaaaaa agaacaagtg aacatgttca ccaaaatgag caatgtttac ccaacacta       2699
//
ID   TDD3        repbase;    DNA;    INV; 5218 BP.
XX
AC   AF002669;
XX
DT   16-AUG-1999 (Rel. 4.07, Created)
DT   16-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   non-LTR retrotransposon Tdd-3, complete sequence.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; ORF1; ORF2; TDD3;
KW   endonuclease; reverse transcriptase.
XX
OS   Dictyostelium discoideum
OC   Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
XX
RN   [1]
RP   1-5218
RA   Winckler T., Tschepke C., de Hostos L.E., Jendretzke A.,
RA   Dingermann T.;
RT   "Tdd-3, a tRNA gene-associated poly(A) retrotransposon from
RT   Dictyostelium discoideum.";
RL   Mol. Gen. Genet 257(6), 655-661 (1998).
XX
RN   [2]
RP   1-5218
RA   Winckler T., Dingermann T.;
RT   "TDD3.";
RL   Direct Submission to Genbank (06-MAY-1997)Pharmaz. Biologie,
RL   Universitaet Frankfurt, Marie-Curie-Strasse 9, Frankfurt 60439,
RL   Germany.
XX
DR   GenBank; AF002669; Positions       1    5218.
XX
CC   Comparison of several genomic Tdd-3 copies revealed that element
CC   insertion is orientation specific and occurs about 100 bp
CC   downstream of tRNA genes in the D.discoideum genome [1].
CC   Tdd-3 encodes two overlapping open reading frames (ORFs) flanked
CC   by non-redundant, untranslated regions. The deduced amino acid
CC   sequence of ORF2 (1334-5116) is homologous to
CC   apurinic/apyrimidinic
CC   endonucleases and reverse transcriptases (RTs) encoded by the
CC   class
CC   of poly(A) non-LTR retrotransposons.
XX
SQ   Sequence 5218 BP; 2177 A; 1268 C; 667 G; 1106 T; 0 other;
     ccgtaccgcg atcaagagga tacaagatac acgtgaaaag taattcatcc ttttctatct        60
     ttaatctcgg tcaattttaa ccaatctttc aaaaaaaatc accaatccac cacgatttac       120
     agatctaaca taccaaatcg ccgattcaaa ggaatcccat cgagatgaat tcctacgcag       180
     acgcggctaa aatggccaac ccctccaccc atatggacga ggcatcggag aacttcatta       240
     aggaattctc cacaaaaaca gcagagataa aggagaccta ccccaaacta tcaataggcc       300
     tcaaagacat ctccaaatac tgcgagacca tattgaacat gactgcgctc tcaacctatg       360
     agaagaacaa cggattctac ccaattacac tcgaattccc caaaatggat ctcaaggggt       420
     tagaagaaat gagaaaaaca ctctcaaact acgatatccc attcgacaag atatacatag       480
     gcaaaggaac tagaaaaatg atccacctga tgattaaaaa cgaacaatct ctcctaaata       540
     tcattagaga tagaagcaaa ttgggaacct tcatcacctc cagtagagac ttccacgtcc       600
     tcacaggaag agtaagaatt cccagagaaa aggcaggaat agtggacgcc ctcatcaaaa       660
     ctgcctttgc agaagaaata ccctatgcaa tatacaatac tatatactcc accgaccacc       720
     tcatagtatt cggtctaata gaatgcaaaa taggcgatca aatgaaatct ggccaacaca       780
     ttacagaaat cgcaaacttt accatcagaa cggccaccaa aacctactcc tcacaaaaga       840
     aaaacaagaa agtagagaca aacaacacgg aggaaccatt agaagatgag atgacagatc       900
     ctcctaacac ccaaaacagg atagcaatca aatcctttca acccaaacca caacaacaaa       960
     caaacaaccc agcaaacaat cagtttgaaa aacaatcaac acaagagaaa aaagcccaag      1020
     caaaaaagtc atttcaacct tttcccccca aaaacccagc agaatctcaa tttgtcaaac      1080
     ccaccacaac cactaccaca acatccaacg ccatccaaaa agacaatgcc aacaaaacga      1140
     gcaataacat ccattcatcc tcggaaaaca gagagaagac actaaacatc cctccatcac      1200
     ataaacgcaa gaacgaggaa atccactcaa acaatgaagt cacccaactc tcaccaacaa      1260
     taaacagaag caacccttac atcccatcca cccctaagac acctgtcaaa aaagaaagta      1320
     aaggaatcat tgagagcttc atagagagta tctacccttc accatccaaa ccgcagctat      1380
     acgactccca agaggagatc gatatcatct cataatagta gtaatcaaaa tcaaccaatg      1440
     gaatgtcaga ggttggggca ctgacacctc cttcaaaaac aaaacagact ttatcaaatc      1500
     ccaatccccc ccaaactcat tggcactaac catagtcaat gaactcaacg ccgacgcaac      1560
     acaagcacac cagctattcc ctggctccat cattagcgca accaacagag gcaacggaat      1620
     aggaatacta aaccacaaca accaaaacat aaaactctca ccaatattca taatagaagg      1680
     tagactaata atatcagaca ttctaataaa agataccaca acgagaatct tggccatata      1740
     cgccccggcc caacctgata aaagaaaaac actagcttca acactaaaca aacacttcaa      1800
     caaccaatac cacaacctaa cgtctaaccc taataaaaac atcgacatca tagcaggaga      1860
     cttcaactgt ttagacttca atgacaatca cacatcaaat gatgaccaag gcaacttgac      1920
     aacacaatcc ccagatgaga tggccacagt aatcgaagcc atcagaattt caaataacct      1980
     aatggatatg gaccaactaa ataaaagacc caccttctca agaacgatac acaacacaaa      2040
     caataacctc acaagaatct tggaaaggag actagacaga atatacctta acaatagctt      2100
     aatcaactac agccaattat acctaaggaa cctaatcccc ccaaaaatta acgacatacc      2160
     tctatcagat cacaacttcc tatcaaccac cttcactcta cacaacatac agacgaacat      2220
     gcgcagatgg agattaaaaa aatcctcaat cctctcaagc ataatgctta agaatataga      2280
     cttcctactt aacggttatt caagggagct gtcatccaac cataactcta tttccttctc      2340
     tcaactcaac agcttactga acaaaataaa acaactatac accgaatttc aaaaacaaaa      2400
     cgactacaac aataaggcaa acatcaaaaa tctaatctcc ctactagaga cagaatttaa      2460
     agaccaagcc tttgcaaccc tttcagcaat aaatgaatct aaaaaaagag aagaacaact      2520
     taaacaagaa ttgaacaact attgcgaaga aacctcactc aagtacatct ccgcgagaat      2580
     caagaaaaga cacaatgatt tcaccatcaa cgcagtaaaa gatacacaag gtagaacaat      2640
     caacaaacag gaattgatcg aagaagaata cgtaaaatat tactcaaatc tttatgacta      2700
     caaagaagat gacccaccat ctcattatga aatcttggaa aattggacag tgaccaggga      2760
     ctcaacatgg gacaaccttg aaaatgaatt cacatcacaa gagatcctag aagtaataaa      2820
     acaattgaac ccacacaaat ctccaggccc agatggaatt ccaaacttat tctacataac      2880
     acacaaagaa aaactagctc caatactggc ctcagcattc aacgacactc taagaaatcc      2940
     tcatctaatt agcaaaaatt acaaagaagg cctcattatc acgataccta aaaagggaga      3000
     tcccgaacta atcaaaaaca gaagaccaat tacactggct aactgtatat ataaaatcca      3060
     ctcaaaacta ataaacaata gaataatccc aatactaacg aaagtgatca accacaatca      3120
     aaaaggtttc gtaccaggca gattcattct gcataatatc atatcaatta acgaattaat      3180
     caactattgt aatgataaaa gaattaacgg aataattaca ctatatattt cgaaaaagct      3240
     tttgactcga tctcacacgg ttcaatctca gatcactaca acacatcaac attccaacca      3300
     atatatcaac ctgataatga atctactcac caaatctgag gcaagaattg aaattaatgg      3360
     tagaactact ataccctttg agatcaaaag aggagttaaa caaggagatc cactatcacc      3420
     caccctgttc gtccttgtaa tagaggcttt agctagaaaa attttacaag atgaccgaat      3480
     tactggcctt cctctaaaca acagcaacca cagagagaaa ttccaaagct ttgcagacga      3540
     ttcggcttca atggtcccag actctcaaca acttgaatta gtactacaac acttcaattc      3600
     attttgcaaa gccactcctc aaaacaaaca tcgacaaatc ttcatcaatt cttataggca      3660
     acccagacaa taccaaccaa agaattccaa tatctacaaa tccagaaaga tacttgggat      3720
     acttcttcac aggcaaaggg ataacaagaa aaatgccaga aatattaaac acaataagat      3780
     catccttagt actatggaaa accactttct caacaatcaa aaccaaaacc aaccttcctc      3840
     aaaagcattc gcactctcta aattaaccta ctattcatat gtagagaact ttaaggaaga      3900
     ggaattaaac caaatcaata aactagtcga atggttttta tcggcaccaa acaacaaaaa      3960
     tgctagtgga tttcaagtta ttaatttaat gagaaccaaa agagcaagat acccactaaa      4020
     agtagggggc tggaacattt ggaatataga attgagacaa ctggcgcaga aactttggat      4080
     cataaaccag ttcatcctag cactagaaac caaacaaaca aactcatctc atcacaaaag      4140
     ctgggaatat cagatccaaa aaaacaaatt cacatccaga tacctaaaag aaaacttaga      4200
     cgaatggaac aaaataagaa taaaaaaagc aatcttcaac aataatctca catccataaa      4260
     aaacgaaaat ggacaaccac tttcactggc agaatggtat accacaattc aagaccaaaa      4320
     tccaaccatc cctaaaacgg aattccaatc atctctaaac ttaagaggct acagctataa      4380
     tcaactcttc aacaacatac tgaagataaa agaccctaaa acaagagaca caatgtttag      4440
     attccatgcc agatgccttc caataaacta ccttcacaac aaacaatgcc cactctgcaa      4500
     agaagatatg agcaaagacc catacggtca cctgttcttc tcatgcaaga aaacaaaaca      4560
     attcataaaa ataaataaac tcaaaaattt catctatatt accacaggca aaggtaaaaa      4620
     ctggcaccat acaagaatta ggcaaaataa caatttcatt aatagaataa ctccaaaatt      4680
     atcaccgata gccaaaaaag atcaagaagt gaatgcagat tacgccaacc acagattcca      4740
     caaagaatac tttgaatgga actataaagc aatagactat gatctaacta gatcattcgc      4800
     atatagaaac ctaatggccc ttatcctcca caacatttgg atttggattt gcaatcaaat      4860
     atacactcaa gatcctttaa cagatgaatc actatcatac agctcccttc taaagaaatg      4920
     gcacaaattg gccactctag aatacatcaa aaaagcaaaa gatctaaaaa acttatcagc      4980
     aaaagaccat aataacttca aagatcctaa gatccttctc acctcaacga tcaagctaag      5040
     aaaaacaaca gctaattact attgtattcc agaatcatct ctcccaaata ttatatcttt      5100
     tgatcaattc atatgattaa aataaccctt cagcttaaat gataagcctt taaataaata      5160
     ttaaataaaa ctcgtattaa cacagatgga catatatcaa tcttgttaat ccaatatt        5218
//
ID   XDMR_DM     repbase;    DNA;    INV; 360 BP.
XX
AC   M16263;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.melanogaster dispersed middle repetitive DNA sequence.
XX
KW   Dispersed middle repetitive DNA sequence; DMDMR; XDMR_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-360
RA   Waring L.G., Pollack C.J.;
RT   "Cloning and characterization of a dispersed, multicopy, X
RT   chromosome sequence in Drosophila melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 84, 2843-2847 (1987).
XX
DR   GenBank; M16263; Positions       1     360.
XX
SQ   Sequence 360 BP; 138 A; 56 C; 42 G; 124 T; 0 other;
     ccaaatttaa atgcaaatcg atttggattt taataacaaa ctcaacgagg tatgacattc        60
     catatttggt ctattatttt caatgttatg atcaaaatac caaatatttt tttcacaaaa       120
     aaccaggaaa acgaaatttg gcaaaaaatt taatatttaa gtagagtttt ttgggtataa       180
     cttgactaaa aatggtcaca caactaaaat aattaccatt ttgtgctcct aattaccaat       240
     actaatcatc cccatcactt tttggcggac tttgaaaaat taatttttgc ccaaattttc       300
     gcattttttg taaggggtaa ctcatcaaaa tttttaaaaa atgccaaaaa aataaagttc       360
//
ID   FAMAR1      repbase;    DNA;    INV; 1299 BP.
XX
AC   .
XX
DT   10-SEP-2005 (Rel. 10.09, Created)
DT   10-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   Forficula auricularia Famar1 mariner transposable element - a
DE   consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; FAMAR1.
XX
OS   Forficula auricularia
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Orthopteroidea; Dermaptera; Forficulina; Forficuloidea;
OC   Forficulidae; Forficula.
XX
RN   [1]
RP   1-1299
RA   Lampe D.J., Witherspoon D.J., Soto-Adames F.N., Robertson H.M.;
RT   "Recent horizontal transfer of mellifera subfamily mariner
RT   transposons into insect lineages representing four different
RT   orders shows that selection acts only during horizontal
RT   transfer.";
RL   Mol Biol Evol 20(4), 554-562 (2003).
XX
CC   [1] (Consensus)
XX
CC   The sequence is 95% identical to MARINER_AM, possibly due to
CC   horizontal transfer.
XX
FH   Key           Location/Qualifiers
FT   CDS           190..1215
FT                 /product="FAMAR1_1p"
FT                 /translation="MENQKEHFRHILLFYFRKGKNASQAHKKLCAVYGDEA
FT                 LKERQCQNWFAKFRSGDFSLKDEKRSGRPVEVDDDLIKAIIDSDRHSTTRE
FT                 IAEKLHVSHTCIENHLKQLGYVQKLDTWVPHELKETHLTQRINICDLLKKR
FT                 NENDPFLKRLITGDEKWVVYNNIKRKRSWSRPGEPAQTTSKAGIHQKKVLL
FT                 SVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLNNAVEEKRAELTNRKGVV
FT                 FHHDNARPHTSLVTRQKLLELGWDVLPHPPYSPDLAPSDYFLFRSLQNSLN
FT                 GKNFNNDDDVKSYLIQFFANKNQKFYERGIMMLPERWQKVIDQNGQYITE"
XX
SQ   Sequence 1299 BP; 436 A; 226 C; 248 G; 389 T; 0 other;
     atatataagg ttggcaacta agtacttgcg gatttcactc atagatggct tcagttgaat        60
     ttttaggttt gctggcgtag tccaaatgta aaacacattt tgttatttga tagttggcaa       120
     ttcagctgtc aatcagtaaa aaaagttttt tgatcggttt cttagttttc gtttggcgtt       180
     cgttgaaaaa tggaaaatca aaaggaacat tttcgtcata ttttgctttt ttatttccgc       240
     aaagggaaaa acgcatcgca agctcacaaa aagttatgtg ctgtttatgg cgacgaagcc       300
     ttaaaagaac ggcagtgtca aaattggttt gccaaatttc gttctggtga tttttcactc       360
     aaagatgaaa aacgctctgg tcgtccagtt gaagttgatg acgacctaat caaagcaata       420
     atcgattcgg atcgtcacag tacaacacgt gagattgcag agaagcttca tgtatcacat       480
     acatgcattg aaaatcactt aaaacaactt ggctatgttc aaaaactcga tacatgggtt       540
     cctcacgaac tgaaagaaac gcatttaacg caacgcatta acatctgcga tttgctaaag       600
     aaacgtaatg aaaatgatcc atttttaaaa cgactgataa ctggcgatga aaaatgggtt       660
     gtttacaaca atatcaagcg gaaaagatcg tggagcaggc caggtgaacc agctcaaaca       720
     acatcaaaag ctggtattca tcaaaagaag gttttgttat cagtttggtg ggattacaaa       780
     ggaattgtct actttgaact cttaccaccc aaccgaacga tcaattctgt tgtctacatt       840
     gaacaactaa cgaaattaaa caatgcagtt gaagaaaagc gggccgaatt gacaaatcga       900
     aaaggtgttg tattccatca tgacaatgca aggccacaca catctttggt cactcggcaa       960
     aaattattgg agcttggttg ggatgttttg ccacatccac catatagtcc tgaccttgca      1020
     ccatctgatt actttttatt tcgatcttta caaaactcct tgaatggtaa aaatttcaat      1080
     aatgatgatg atgtcaaatc gtacctgatt cagttttttg ctaataaaaa ccagaagttt      1140
     tatgaacgtg ggattatgat gctgcctgaa agatggcaaa aggtcattga tcaaaatggg      1200
     caatacatta cagaataaag ttatttagtt ccatgaaaaa attgtttgat tttctaaaaa      1260
     aatccgcaat tatttagttg ccagcccaat ataatatat                             1299
//
ID   PAL5A_CE    repbase;    DNA;    INV; 792 BP.
XX
AC   .
XX
DT   31-AUG-1999 (Rel. 3.7, Created)
DT   31-AUG-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   PAL5A_CE non-autonomous DNA transposon - a consensus.
XX
KW   TIR; Non-autonomous DNA transposon; palindrome; IR-2; PAL5A_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-792
RA   Devine E.S., Chissoe L.S., Eby Y., Wilson K.R., Boeke D.J.;
RT   "PAL5A_CE.";
RL   Direct Submission to Genbank (MAR-1997).
XX
RN   [2]
RP   1-792
RA   Kapitonov V.V., Jurka J.;
RT   "PAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [2] (Consensus)
XX
CC   PAL5A_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect 396 bp-long palindrome and generates
CC   duplication of 5 bp-long target site upon its integration
CC   in the genome.
CC   PAL5A_CE can be still mobile since some of its individual
CC   copies are more than 98% identical with the consensus
CC   sequence.
XX
SQ   Sequence 792 BP; 249 A; 146 C; 149 G; 247 T; 1 other;
     cactgcaact ttttcctcac gagggacgag gaaaagtggt ttctaggcca tggccgaggg        60
     gccgacaagt ttcagcggcc atttatcttg ctttgttttc cgcctgtttt ctttcgtttt       120
     tcaccgattt ttcccgtttt ttcttattaa aactgataaa taaatatttt ttgcagatgc       180
     taaaacaatt tccaagtaaa aaaattatgt attcagtggg caagcagcgg tgaaagtggg       240
     caatgtaata tgatggatta cgggaataca aaacctaaac tttttctgaa acatgataca       300
     tatgctgctt agatgctgaa actacctgat tttcataacg agaccgctga aaaagttttg       360
     aggttttcaa aattcaactt ttttggtgaa aaagtcgaga ttttcgcaca aaaagttgaa       420
     ttttgaaaac ctcaaaactt tttcagcggt ctcgttatga aaatcaggta gtttcagcat       480
     ctaagcagca tatgtatcat gtttcagaaa aagtttaggt tttgtattcc cgtaatccat       540
     catattacat tgaccacttt caccgctgct tgcccactga atacataatt tttttacttg       600
     gaaattgttt tagcatctgc aaaaaatatt tatttatcag ttttaataag aaaaaacggg       660
     aaaaakctgt gaaaaacgaa agaaaacagg cggaaaacaa agcaagataa atggccgctg       720
     aaacttgtcg gcccctcggc catggcctag aaaccacttt tcctcgtccc tcgtgaggaa       780
     aaagttgcag tg                                                           792
//
ID   CVE         repbase;    DNA;    INV; 520 BP.
XX
AC   .
XX
DT   04-OCT-2002 (Rel. 7.09, Created)
DT   04-OCT-2002 (Rel. 7.09, Last updated, Version 1)
XX
DE   CvE: putative non-autonomous DNA transposon element from oysters
DE   (Crassostrea virginica) - consensus.
XX
KW   DNA transposon; Interspersed Repeat; CvE;
KW   Non-autonomous DNA transposon.
XX
OS   Crassostrea virginica
OC   Eukaryota; Metazoa; Mollusca; Bivalvia; Pteriomorphia; Ostreoida;
OC   Ostreoidea; Ostreidae; Crassostrea.
XX
RN   [1]
RP   1-520
RA   Gaffney M.P., Pierce C.J., Mackinlay G.A., Titchen A.D.,
RA   Glenn K.W.;
RT   "Pearl, a novel family of putative transposable elements in
RT   bivalve molluscs.";
RL   J. Mol. Evol0-0 (2002)In press.
XX
CC   [1] (Consensus)
XX
CC   Uncommon, structurally similar to CvA. Modular organization
CC   includes
CC   subterminal inverted repeats (nt 23-33, 505-515), perfect
CC   inverted
CC   repeats (nt 409-416/494-501, 483-491/510-518), an imperfect
CC   inverted
CC   repeat (nt 89-97/147-155), self-complementary regions (nt 10-21,
CC   494-507),
CC   and an (ACTG)n microsatellite region (nt 434-473). Putative
CC   target site
CC   duplication AA. Individual CvE elements contain several copies of
CC   a 180 nt
CC   core repeat unit, the first copy being truncated at the 5m end
CC   (nt 147-237
CC   and 238-417).
XX
SQ   Sequence 520 BP; 172 A; 108 C; 104 G; 136 T; 0 other;
     aagaaagagt gagcaagctc acatacccca cgctccaaca ttgcttgaga atgctgtata        60
     caatgaatgg caattccaag cattagagac aggcaatcgg acaaaaaagg gggatataaa       120
     ttgctcctca aaaggatcaa atcagcattt cctgtaaaaa tgcatatcta cacattatgt       180
     ccttcataac tacaaagttt cacgcaattc tgttgagcgg tttcagtgga gttgcgctga       240
     ccaactgttt cagtagtatc tttcattttc gtcaaatttc taagttcaaa aaggggcatt       300
     gctcccagaa aaaaaatgga atcaaaatgt cctgtggata tgcacatcta cacattatgt       360
     ccttcattac tacaaagttt caggaacttc tgttgagcgg tttcagagga gttgcgctaa       420
     caagaaaaac aggactgact gactgactga ctgactgact gactgacgga caggtcaaaa       480
     acattatacc ctccgcaact cgttgcgtgg ggtataataa                             520
//
ID   FORK_DM     repbase;    DNA;    INV; 1435 BP.
XX
AC   X62679;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.melanogaster forked gene suppressor repeat.
XX
KW   Repetitive sequence; Tandem repeat; DMFORK; FORK_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1435
RA   O'Hare K.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (18-OCT-1991)K. O'Hare,
RL   Imperial College of Science, Technology and Medicine, Dept of
RL   Biochemisty, London SW7 2AZ, UK.
XX
RN   [2]
RP   1-1435
RA   Tudor M., Mitchelson A., O'Hare K.;
RT   "FORK_DM.";
RL   Unpublished.
XX
RN   [3]
RP   1-1435
RA   Mitchelson A., Simonelig M., Williams C., O'Hare K.;
RT   "Homology with Saccharomyces cerevisiae RNA14 suggests that
RT   phenotypic suppression in Drosophila melanogaster by suppressor
RT   of forked occurs at the level of RNA stability.";
RL   Genes Dev 7, 241-249 (1993).
XX
DR   GenBank; X62679; Positions    8638   10072.
XX
SQ   Sequence 1435 BP; 469 A; 236 C; 265 G; 465 T; 0 other;
     aagggcgctg tcacctcgaa aactttaaaa gctttgaagt taagataatg tatgcatttc        60
     tttccttttt tctgattttc gaaacgtaac gttttaaacg ttttaatcat tcgttaatca       120
     aacagcaatt catataacag aacgttatat gaatttttgt taagtgttct aaatattttg       180
     gtaacacaga caggacgaaa tgaattttct atctattaaa taaattgata tttaaagaaa       240
     gcaaattaat ttagaaatat attgacaatt tccaactaat ttatctctgt tatggaaaat       300
     tagtttagga aaaaagttaa aataacaaaa ggaaccgcta tagtagattt tctccactag       360
     cgccactcaa ctaaggggag aacgagggag aaactttgaa acttgattgt catatccata       420
     aaattgttta gaataacaag agagaatgct atagtcgagt tgcctgaata tcagataccc       480
     gttaacccag atatttttct gcgataccaa aagatgttgg ggaataaaat gagaaaaaat       540
     ttcaacaatt ttcaaaagtg gggcgtgacc ggtttgtcgg cttaagggcg tcacagtggg       600
     tgtggcaaac agtttttttt ttgcacatcg atcggaattt acaagactaa taaagatgtg       660
     aaaaaatatc aatatatttt tcaaaagagt gatcgtggca ttttttcgtg ggcttgtggg       720
     cgttgcaaca tggatcaaca aacttgcgct gcgtctttgt ctctagaatc tgcatgctaa       780
     atctccgcct tccagctttt atagttcctg agatctcgac gttcatacgg acagacggac       840
     atggctatat cgactcggct attgatccgt tatacagtcg gaaacgcttc cttctgcgtg       900
     ttacattcct ttaaacgaat ctacgttact ctacgagtaa cgggtataat aaccaaataa       960
     aaaagtctaa acatatttaa aaaatttggt tggcgttcga atgagatggt ggaggtattt      1020
     tggcaaagcg atacaaagta gcaaaaaatc aaaaaatgca atgaaaaata attataacat      1080
     ttcacaaaag tgtgggtgtg aaccttttgg gcggtttgcc gtcgttaggg tgtgcgaata      1140
     tttcaaaact tgcccacgta ccactatgtg aaattttacc actttttctg cccaaaatga      1200
     ataactccag gacgttgaaa gatattcaga ttgggttaca atatatccgt tctgaaaccg      1260
     ccccttatat ttgttgtagt ttgtaactct agaacggata aagatattta aatttttttg      1320
     ccattatctt ttatgatacc aaaaattgtg gccgtggcac cgcctcttat atttaattaa      1380
     ctaattttgt ataggtattt ctctaatttc gtatgctttt tctagtccaa gcaaa           1435
//
ID   HELICOPY3   repbase;    DNA;    INV; 195 BP.
XX
AC   .
XX
DT   09-AUG-2000 (Rel. 4.1, Created)
DT   09-AUG-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOPY3 is a nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HELICOP superfamily; HELICOPY3.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-195
RA   V V., Jurka J.;
RT   "HELICOPY3.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   There are about 50-100 copies of HELICOPY3 in the C.elegans
CC   genome.
CC   They are ~99% identical to the consensus sequence.
CC   This family is a nonautonomous HELICOP-like DNA transposon.
CC   Several copies are identical, therefore, it is likely that
CC   HELICOP-like transposons are curently active in the C.elegans
CC   genome. HELICOPY3 and HELICOPY2 share identical 22-bp 5'-
CC   and 38-bp (one mismatch) 3'-termini. Their internal portions
CC   are different.
CC   A 49-bp 5'-termini of the autonomous HELICOP2 transposons is
CC   94% identical to the HELICOPY3 5'-termini. These transposons
CC   share 84% identical 38-bp 3'-termini.
XX
SQ   Sequence 195 BP; 49 A; 44 C; 48 G; 54 T; 0 other;
     atcatttact atatataaag cgcgtgtcct tctgtcccta tgtagtttga tctctgatca        60
     gagcaacgaa attttgggaa accttatgct aaatgcgcag cagacatcga tcgaggtccg       120
     cgatagacac cgtatatcta atgtgttttc tcaaaaaagt cgggggccgc gccgtaggtg       180
     cggtccacgg ctggt                                                        195
//
ID   DMLTR5      repbase;    DNA;    INV; 266 BP.
XX
AC   J01078;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.melanogaster transposon-like insert into cuticle protein gene
DE   III (CP3), 5'LTR.
XX
KW   Repetitive sequence; transposon; DMLTR5.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-266
RA   Snyder P.M., Kimbrell D., Hunkapiller M., Hill R., Fristrom J.,
RA   Davidson N.;
RT   "A transposable element that splits the promoter region
RT   inactivates a Drosophila cuticle protein gene.";
RL   Proc. Natl. Acad. Sci. U.S.A 79, 7430-7434 (1982).
XX
DR   GenBank; J01078; Positions      48     313.
XX
SQ   Sequence 266 BP; 74 A; 55 C; 69 G; 68 T; 0 other;
     agttaataat tacagttatc gatttgattt tgaagatcgc aagcgaccgt ttattgcaat        60
     ttatcattcg aaactaaatc tagcgtacaa aatgtttccc taagtcccta gcaatcaagt       120
     gaagtcgtcg gcagtggcgc agcaggcgtc ggccgcggcg cagcgcagaa gtgtcgatgt       180
     cgcgcttaac cgttcgttgg cgttgatggc agcggagact atgtggaacc acaagatgtt       240
     agagaatcaa ttgcagggca ataact                                            266
//
ID   LARP1       repbase;    DNA;    INV; 214 BP.
XX
AC   L42484;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Leishmania aethiopica DNA repeat.
XX
KW   LARP1; Repetitive element.
XX
OS   Leishmania aethiopica
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-214
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42484; Positions       1     214.
XX
SQ   Sequence 214 BP; 50 A; 69 C; 65 G; 30 T; 0 other;
     gcaagaagca agaggcagtg tcacagagat gggcgaaggg ggacggtggg agcgggagag        60
     agaccgcggg cacgtggcga cgcccgtgaa atgaaaaaaa gcagaagacg cgtattccct       120
     tttgctgatg tgtgcctacc tctctgccac agatcacgac ctcagctccc ctccacccca       180
     acgcctcccc cgcgcggccc tgtcacaggc tccc                                   214
//
ID   Transib4_AA repbase;    DNA;    INV; 928 BP.
XX
AC   .
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Transib4_AA is a DNA transposon, a partial consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; DDE-class;
KW   TRANSIB superfamily; Transib4_AAp transposase; Transib4_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Culicinae; Culicini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-928
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 Core and V(D)J Recombination Signal Sequences Were Derived
RT   from Transib Transposons.";
RL   PLoS Biol 3(6), e181-e181 (2005).
XX
CC   [1] (Consensus)
XX
CC   Transib4_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib4_AA encodes remnants of the Transib4_AAp transposase.
CC   The transposase is not perfectly recovered due to available
CC   sequence
CC   data.
CC   Conceptually translated Transib4_AAp transposase:
CC   XLLNVVLTVKWGFDGTSGVSEHKMKLKGDDGTFSDKSMFVTSLVPLKATANGKVLFVNKRPSSTRYCRPI
CC   RIQYIKETVAVTVQEKEHVIQQINELTPFNIPMHGRVIRIHCRMHLTMIDGKAINAITSTKSTQTCYVCM
CC   ATPKDMNNLDRIYSKVIDASTFDFGLSPLHAWINFFEFFLHLAYKLPVKKWRITNEYVNIVEERKKQIQR
CC   KFKIEMGLIVDQPSAGGAGTSNDGNTARRFFSKPGNVGQNNRAKPGSDQEMCSNT.
XX
SQ   Sequence 928 BP; 317 A; 170 C; 204 G; 237 T; 0 other;
     cctggaacac acagcacaaa ggataataga agccaatgca aatttgttgt gtaattttac        60
     ggatgcagaa ctattgaacg ttgtgctgac ggtaaaatgg gggttcgacg gaacatctgg       120
     ggtgagcgaa cacaaaatga aatttgaagg agatgacggt actttttcgg acaaaagtat       180
     gtttgtcact tcactcgtgc ccctgaaagc tactgcaaat ggaaaagttc ttttcgtaaa       240
     taagcgacca tcatcaacca ggtactgtag acccatcaga attcagtaca tcaaagagac       300
     agtggcggtc acagtacaag agaaggagca tgtcatacaa cagatcaatg agttaactcc       360
     gttcaatatc cctatgcatg gaagagtgat cagaatacat tgtaggatgc atttgacaat       420
     gattgatggt aaagctatca atgcgataac gtctactaag tccacacaaa cctgctatgt       480
     ttgcaaggct actccaaaag atatgaataa tttggatcgg atctacagca aagtgataga       540
     tgccagcaca ttcgactttg gactgtcacc tcttcacgca tggatcaatt tttttgagtt       600
     tttcctccat ctagcgtaca aattaccggt gaaaaaatgg aggattacaa atgagtatgt       660
     gaatatcgtt gaagagcgta aaaagcaaat tcaacgaaaa ttcaaaatag aaatgggact       720
     cattgtggac caaccttgtg caggaggagc aggtacgtca aatgatggca atactgctcg       780
     tcgttttttt tttaaacccg gaaatgtcgg ccaaaataac cgagctaaac ctggaactga       840
     tcaagagatg tgcagtaata cttgaaacta tggcatcagg aatggaaatt aacatcgaaa       900
     aatttgattt ctgtcgaaaa cagctgag                                          928
//
ID   DMLTR3      repbase;    DNA;    INV; 482 BP.
XX
AC   K01952;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.melanogaster gypsy transposon sc1, 5' LTR.
XX
KW   transposon; Long terminal repeat (LTR); DMLTR3.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-482
RA   Freund R., Meselson M.;
RT   "Long terminal repeat nucleotide sequence and specific insertion
RT   of the gypsy transposon.";
RL   Proc. Natl. Acad. Sci. U.S.A 81, 4462-4464 (1984).
XX
DR   GenBank; K01952; Positions      25     506.
XX
SQ   Sequence 482 BP; 126 A; 102 C; 112 G; 142 T; 0 other;
     agttatataa gttccaatag gtccagagtt atgttatttc cagtaggtct agagatcttc        60
     cttctttcgc tgaggttcgt cttagacact gtttatggag attaggttgg agggcttgac       120
     ttcgccccct tagttattat cactagcctt gtggcgatag cgatttgatt gtaaataaga       180
     acaatgatgt ttaacggcaa tgagccggag caagctgtgg tttatttcaa cacaagattt       240
     gaactgagta gaagacaata ttgaaaacta agtttaccct cgagcaatgc atcgcgccgc       300
     cacaagtcgg caagccgact cagcatttct tgcagcgtga agcaacactc ccggtaggaa       360
     gtgtcagctt tccgctgcca gcattcttcg cgtggagcgt tgaacccaat tctgggcgcg       420
     tcagcattgt tcatacaaag ctacttagtt gctacgaagc aatacattgt tagttgttaa       480
     ct                                                                      482
//
ID   LDT1        repbase;    DNA;    INV; 5677 BP.
XX
AC   AF081103;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   01-JUL-2005 (Rel. 4.06, Last updated, Version 2)
XX
DE   Lymantria dispar non-LTR retrotransposon LDT1-4 putative
DE   gag-related protein and putative endonuclease/reverse
DE   transcriptase genes, complete cds.
XX
KW   Jockey; Non-LTR Retrotransposon; Interspersed Repeat; LDT1.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-5677
RA   Garner J.K., Slavicek M.J.;
RT   "LDT1.";
RL   Direct Submission to Repbase Update (31-JUL-1998)NE4509, USDA
RL   Forest Service, 359 Main Road, Delaware, OH 43015, USA.
XX
RN   [2]
RP   1-5677
RA   Garner K.J., Slavicek J.M.;
RT   "Identification of a non-LTR retrotransposon from the gypsy
RT   moth.";
RL   Insect Mol Biol 8(2), 231-242 (1999).
XX
DR   GenBank; AF081103; Positions       1    5677.
XX
SQ   Sequence 5677 BP; 1508 A; 1744 C; 1226 G; 1199 T; 0 other;
     agactgaatg ctagtatata tacaccgcct tttgctgtct attcaatcat tccgcgtcgg        60
     agactcgtag cgcacggacg tgcgcctcgc tgctctccat ttcgccgcgc tcaccccgca       120
     cccgccccct gcggtcgtgc gttctcgctc cgtctcgctc gctctcgcag cgaaccacgc       180
     gtcgcgtcaa gccgccatct tgttcaacgt ctgtggccgt tcagtggccc gctccgggtg       240
     gccgtgtata cggttgtctg tggcagtttc gctgtttgga cgcaggtgtt gccggatccc       300
     aactgcacga gtcgactttt tcaagacgtc gagtgcagat ttctaccgtt ggtagataaa       360
     aagtcaacct attttggccc cctcagggta gaaaaccata ttgtttggtc cccggcggaa       420
     acctcacggt gtcaacgaag ccgggtgagg caaggccccg atttgcctgc cgagcccctc       480
     cagggcagag ctaacaatcg gaaggggtta gagcatccgg ccttggggga tctcctagtc       540
     ggacctaatc tacggctttt caacattttt ctgcgaaggc ctaacggccc gagcagctag       600
     gaacctatcg cacattaaga ttggcgaagg attacaagct tagggcacac taattaagta       660
     ctcatcctcc cgacctgcac ccggttggga gggacacgca ccacacacaa cccagggtat       720
     cccacccagg gcgctaggtt ttttacatcc ctcttagcta tcgttttttt ccgttagccc       780
     acgatggcgg aaaaaaccat cactatagac gcccttctgg caattccaga aatcaaagct       840
     tatatcgctc aacatttcgg agcgataacg atccttcctc cgcaacccaa acccgctcga       900
     tccaccgccc agccgctcga accggaacta ccggccgtcg gtacggcgat ggaaacggag       960
     ccggtcttgt cctcctcaaa ctcgtcttcc tcctcctcct ccgagtcgga agattcgtcc      1020
     aatgagggct cattcattga ggtccgctct cgcaaacgga gcaaaaggac caaaaacacc      1080
     aaagaggccc cctctaagac cccaaaaatc aagcagactg actcggcaac aacatctgcc      1140
     gcagccccgc ttgcaacgac cgccacggcc gctccggccc ccccagtcgt ctcacaggca      1200
     gccctaaccg ctgccccacc acctacggac agcaataccg tcgccccacc gacggtcaaa      1260
     aaatcactcg ctccgccgcc cctatatatt agggacaagg acaagtggct agccatctcc      1320
     gcatggctaa acactaacag gatttcgtat aaatctgcga aatccacccc ccaaggtata      1380
     cgagtggacc ttcactcgtc agccgaccac cgatctgtat caaaaatgct agggaatcaa      1440
     cagattccct accatacgta caccctccct gaagccaaac ttctgcgtgc tgtaatacgc      1500
     aacgtaccga gggaaataga gaccaaagag attctagaat ctcttaaaac ccaggatcta      1560
     ccggttgtag aagtacaccg gatgatccgg ggtaggggtc gttatcccct caacatgata      1620
     ctcgtctgcc ttacaaataa cgcagagggt aaaggcattt ttaaaattaa gaccatctgc      1680
     ggtctatctg gggtctcggt tgagccccca cacaaaaatg gcaacctggc acaatgccac      1740
     aagtgccaac tgtatggaca atcgtccaaa aactgctttg cccgtcctag gtgcgttaag      1800
     tgcctaggtg accatcacac ctctcagtgt gaacggccaa aggacatctc actctgcaaa      1860
     gagccaccag cgtgtgttct ctgtggagaa tacggacacc cggctaacta ccgcggctgc      1920
     ccaagagcgc cgaggaggtt agtccgccag cccaacacaa acggcaaggc cttgtactat      1980
     aacaagacct tcgtcccagc ccccttacca acccacaatg cgtgggctcg ccccctgcta      2040
     aacagcaagg aggctttccc aaccctgccc aacaggcagc ccgctgcccc acccgcaaca      2100
     tctcaactca aaccaccaac aaccgggcca aaccagccca ctggtggtaa tcccaagccc      2160
     cctcagggcg cccctattcc tatcgtcgtc gctaaaagcg cgcccccaaa agccccccaa      2220
     ggactagatc cagatctagc cctggtggcc aacttcgcag ctcaaatcaa tttcacggaa      2280
     atccgcgaaa ttgcagccga attaagaagg aacgagggaa acaacctcgc cctccttaat      2340
     accgcaatta aattttcccc cacgttagag cgtctaggct cgcttaaatt caaataaaat      2400
     ggataggtac actccaggca gagttaaacc cagacacctc aaaataggga cattcaatgc      2460
     caatagccta acccaacaga aggatgaagt aggcacattc cttcgggaac accagctcga      2520
     catcttgcta gtacaagaga cgttccttaa accatttaac aaggacccta gagtcgccaa      2580
     ctataatata gttcgcaacg ataggacaac ctcaccaatg ggcggaacgc ttatctacta      2640
     caaaaggtcg ctgcattgca cacctgtgga tccgccccct ctgatgtaca ttgaagcttc      2700
     aatttgcagg ctagccctct caggccatca gcctatcacc cttgtatccg catatctctc      2760
     tcccaataga gaacattcga aacagttggt tgaaaaagat ctaaaagcct tgctagaatt      2820
     gggaggcgcc gtcatcattg gcggtgacct taacgccaag aacacctctt ggagctgtca      2880
     aagttccaat aagaggggca agactttaga gctattcgct gacagactgg gatttgatgt      2940
     catagcgccc atagagccga cacacttccc ctttaacgtt tcgcacaggc cggacatact      3000
     cgatatcttt cttctcaaaa acataaacct tcgtttatgt tcaatagaag ttcaacacga      3060
     gttagactca gatcaccgcc cggtgactct ggaattagcc tcccgcaccc ccggcccctc      3120
     aggccacaat aacgaaagga ccaagatagc gactgactgg gcacggctag agaaaaatct      3180
     caagtcaacc tcgtcggtcc accttgatca aattcccaaa gacattacgt ctaaggaaga      3240
     gacctctcag gcgatcgact cgctcacaag tcacgtgcag tcgataatgg acgactgctc      3300
     gcggccggta ccagatacga gcgatcgtaa atggcgcctg ccagacgacg tccgtgactt      3360
     gttgagacgg aaaaacgccg cgacacgcgc ttatgaccgc taccctacgg aggacaaccg      3420
     tacccgccta cggtcactcc agagggaggt taaacaagca attaaaaaat tgagacagag      3480
     caaatgggac gccatgatcg aggagctaga accctctcac acagcctttt ggcagctttc      3540
     ccgctcactc aaaaaagaca tcgtgtccac tctccctcct ctcaccagac ccaaccagcc      3600
     tccggcattc atggacgatg aaaagtcaga atgcctggcc gactgcttag agcttcagtg      3660
     tacgccgagt acactacacc ccgacgccgc gaatcaccgc ttcatcgccg acgaagtgga      3720
     acgtcgtaac actctctcgc gctcgttagg aaacgacagc cccgatcagc caatcccagc      3780
     agtgaccacc gatgaggtcg aatcgttagt caggggtctc aaaaccagga aagccccagg      3840
     ttcggacgga atctcaaata aagtcattaa actattcccc gcccacttga taatcctgtt      3900
     gtgctgcatc ttcaatgcag cactaaataa taacatcttt cccgcgcaat ggaaagaggc      3960
     cgtggtaata ggaatccaca aacccggcaa gcgccgtacc gaacctagta gttaccgccc      4020
     gattagtcta ctaagaggtc taggtaagat ctacgaacga atagttctca gtagactacg      4080
     tacattcgcc gaggctaaca acctcgttcc cgacgcacag tttggcttcc gagctaaaca      4140
     cagctgcgta caacaagttc accgtttggt agaatacaca agtagtcagt tcatcatgaa      4200
     cagatatacg ggtgtattat tcctagacgt agcgaaagca ttcgacaagg tttggcatga      4260
     aggcctaatc tacaaactct atctcctcaa gatccctcac tacttaattc acattataca      4320
     tgactactta agtcatcgca gctttcgcta cagggtggaa gggacgttgt cgacctccca      4380
     ccctatcaag gccggcgtcc ctcaggggtc ggtcctctcc ccatttctct tcacgctata      4440
     cactagcgat atgcccaaat tcaaccgggt acataaagcg ctttacgctg atgacaccgc      4500
     actcttttgt gctggtagat ccccgacaac agtagccagg actctccaaa cagcggttac      4560
     cgccctagcc aattggttta ggaattggag attagaaatc aaccccgaga agagtcaggc      4620
     ggtcatgttc actagacgaa ctgcccgttc ctactctatc gatagcattc ccccccttaa      4680
     aattttcaac aagccggtca cttggaccag gcaggccaaa tacttgggtg tgacccttga      4740
     cgatcgactc agcttcgccc ctcacataaa gaaagtccgc gcacgggcag cctttgtgat      4800
     gggccgtctc cactgtctac tcaactctag gtcgcgtatg cccctgagta gcaaagtccg      4860
     actttacacc acctgcatac ggcctatcat gacctatgcc agcgtggtgt tcgcgcatgt      4920
     taagccacac aggatccaca ggctacagac actacaaaat cgtttcatgc gccgagctac      4980
     gggagcaccg tggttcatac gaaacgtcga tctccacatc gacctcgaac tgccgaccat      5040
     caagcagttt atgaaacggt gctctcagag ctactttgac tctgccatga cacaccccaa      5100
     ccaactagtg gttggggcgg cttcctatag accctccaaa atctcctcca tccgacgtcc      5160
     tcgtcacgtc ctcgacgaag aggacgacat tatcacactc gctcaacaaa gagcctacac      5220
     ggcccgcgag gccttaacaa ataaatatcc gcggttccgc cctcgccgtc gaggtgcgaa      5280
     accgcgccgc gcaaaagtca ctaccaaaaa cgtgggcacg tccactttgc ctccagcgac      5340
     gccccaagcc gaggtccgtt ccccacaggg ggagcccttg ggcgatgtcg cttagcatac      5400
     ttttctccgg gttgagagcc ctcagcgctc acccatagtc cgcgtcaagc tgtcaaggcc      5460
     atctgcggcc agcagctgta cacacaaaaa aaaaaaaaaa aaagtctatt cattcagtcg      5520
     acatacgata tcagctcgca cactcgtacg gtcgtcacta gttctattat caatttattg      5580
     tacataattt atgaaatgta aataaatcgt cagtcttaga aataactctc tacgttcttc      5640
     ttcgccttct tctcacatct tcattcgcca accacaa                               5677
//
ID   NDNAX3_CE   repbase;    DNA;    INV; 1593 BP.
XX
AC   .
XX
DT   06-APR-1999 (Rel. 4, Created)
DT   06-APR-1999 (Rel. 4, Last updated, Version 1)
XX
DE   NDNAX3_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   nonautonomous DNA transposon; DNAX family; NDNAX3_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1593
RA   Kapitonov V.V., Jurka J.;
RT   "NDNAX3_CE.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
CC   [1] (Consensus)
XX
CC   NDNAX3_CE is a putative non-autonomous DNA transposon.
CC   There are about 100 copies of NDNAX3_CE in the genome;
CC   they are ~95% identical to the consensus sequence.
CC   NDNAX3_CE shares common termini with NDNAX1_CE and NDNAX2_CE
CC   elements.
CC   These elements do not have terminal inverted repeats.
XX
SQ   Sequence 1593 BP; 475 A; 314 C; 282 G; 522 T; 0 other;
     tctgccaagc agcctctaat aaatgccgag tgtacagact ccgccccttt ttcgcgtttt        60
     ttcgcgtttt ttttggcttg cgaaaaaatg tcacacttcg ttttcattaa taactccaga       120
     gccgtgtgac ttcatgctct aatatttgaa atcctactag aaatattttg ccccacggtg       180
     gagcaaaaaa cggcactaag ttcggagcaa aattgagccc agggcggctt tccccagttt       240
     gaaaaaattt tttgttgctc tttttacccc caaaaaagca tgttttaatt gaattaaaat       300
     tcgggttttg ctcggttttg ttccaaattt atgtgcaaga tactactcag agagactgat       360
     tttttgaaaa aaagtttgag ttcataagtg caaaaggaaa aaagttgtga taaaacaaaa       420
     ggccaaaaaa tgacattttg ccaaaaaaaa atttttttcc gaaaaagtag tttttcgtct       480
     ttatctcaag ttctacttca tcttttttga tatttttttt gtttacccca cgtaaaaaag       540
     tacgctgaac acgattttta actcagaatt gagaaaagtt ctatgagtcg gccgagcaag       600
     acgaataagt gccaaatttt gcacactttc ccattttcgc gaatctactt tttcaatcat       660
     aactcggtca gttttcaagt tttcttagtt ttccaaaaat tgacgtgtag gtctcatcaa       720
     gacgcatcga gacatataaa atttgtaaaa agttcagtgg gaaaattttt caagaaaaaa       780
     ataattcaaa aatttagtac tggggggagt ggtttcctgg gtctcctgaa cattttttcc       840
     actaaagttt tgcggaatgt atttttgatt catagttttt gattttattt aatggaagat       900
     gaagtttcgt cgcattagaa atactctgcc aagagatatt atttttatta attttcaggc       960
     caaaacttgt tttttttcta tacatctgtc tgtgtacaag atatagccct caactgtacg      1020
     tctccttttc gggaaatcaa taatgagtac aatcctgtaa taaaattttc aaaaattcgt      1080
     tttcccgctg acatatcagt aataaacggt tttcgaacgt cttttctcaa attgtaatta      1140
     ttgaagaaag cggaatcgaa agacgactcc ctccagaaat ttttcttccc tacatcccag      1200
     tttgaggtgt ctcccgcatg gccgagtggt tagtgcgtat gactgcagaa attttggtag      1260
     ttggttcaat tctaccaagt gacaaatttt tttgtttttt tgtgagtaat cgggattcga      1320
     atagaaatac tcgattttat acaaaatatg ggtacgtctc ccctaatata aagcctcctc      1380
     aaacttcaat caatcaaaac tcagctttaa ctgattcatc gggtgcatct gtttttggtc      1440
     aaaccgaact caaaaatcaa gaagactccc attgacctac tgaaattttc acgaaccctc      1500
     taacaggttc gaggcgaagc cgagaaccta cgcccggcaa ggggactcgc cttacacccc      1560
     ctacaactgg cgggcccgca gggcccgcta gtc                                   1593
//
ID   RCS5        repbase;    DNA;    INV; 738 BP.
XX
AC   X68553;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   C.elegans RcS5 repetitive DNA sequence.
XX
KW   Repetitive element; RcS5 element; RCS5.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-738
RA   La Volpe A.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (02-OCT-1992)A. La Volpe,
RL   Intern Inst of Genetics & Biophysics, Via Marconi 10, 80125
RL   Napoli, ITALY.
XX
RN   [2]
RP   1-738
RA   Cangiano G., La Volpe A.;
RT   "Repetitive DNA sequences located in the terminal portion of the
RT   Caenorhabditis elegans chromosomes.";
RL   Nucleic Acids Res 21, 1133-1139 (1993).
XX
DR   GenBank; X68553; Positions    1332    2069.
XX
SQ   Sequence 738 BP; 260 A; 112 C; 122 G; 244 T; 0 other;
     gaggcggttg taaactattc gttttttagc aaaaattaaa aaaaaaactt tatttaaatt        60
     taaaaataaa tatcatatgt tatcatacct tagaatatca cgccttaatt tagtaatcat       120
     tttagttcat aagtgtgaga gaaagaaaaa tggattaatc atcggaatta aatatcatca       180
     gaatgattat attcatcaaa ggtcccactt tacttgaggg ttaatttgat cgatataaaa       240
     tgtttatctc atgtgaagaa aggttcgaat tctgtaccta tgaatgctgc cgatatttga       300
     attcctatct catggaaaga aggcctttct tgtgggaaga acggtgttat aaaaaaatat       360
     acgcaggtac agaatttgaa cttttcttcc catgagagag gaatttgaat attggcattc       420
     tataacttca ctaagaaaaa aaatctccaa aggttgatcg cgaatatgta gagattcgtc       480
     gcatcccttc aaatattacg aaatttccaa gtttcttagt gataatcttt attcagatta       540
     ctgaaaaata tacacagatt acttttgagt tgcctgcgaa gttattgtaa aagccaaggc       600
     gagctgttgg tacagaattt gaagttttct tcccatgagt taggaatttg aataatggca       660
     ttctataact ttactaagaa aaaatatccc caaaggttgc tcgcttccct ccaaatatta       720
     cgaaatctcc aagtctta                                                     738
//
ID   KBOC_DB     repbase;    DNA;    INV; 3300 BP.
XX
AC   AY116624;
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   09-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Drosophila bocqueti transposon P-element k-boc putative
DE   transposase gene, complete cds.
XX
KW   KBOC_DB; P-element; putative transposase.
XX
OS   Drosophila bocqueti
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RA   Nouaud D., Quesneville H., Anxolabehere D.;
RT   "Recurrent exon shuffling between distant P-element families.";
RL   Mol. Biol. Evol 20(2), 190-199 (2003).
XX
DR   Genbank; AY116624; Positions       1    3300.
XX
CC   transposase:
CC   MSFCEFCCAVVKTEGVKFIRVPKEDRKRKLWEESLGCSLAHNARICDTHFKGSDFYGETKTKEE
CC   RKRRRLMPNALPRQPTPEPESIPTVKPGYSNAYTQTDIDLENFKLKQKISELEKEIHHLRQQLS
CC   ESDALRQGLTKIFTQNQIKMLPNCGKRIRYNSSDMSEAICLHAAGPRAYNHLYRKGYPLPSRAT
CC   LYRWLSEVEIKTGTLDIVMDLMKNEDMDEADKVCVLAFDEMKVSAAYEYDSAADAVYKPASYVQ
CC   LAMVRGLKKSWKQPVFFNYNTAMDACTLKAITTKLYKSGYIVVAIVCDLGPGNQKLWREFGISE
CC   ENTWFSHPVDPALKIFAFSDVPHLIKLVRNHYVGSGLLISGTKLTKNTVQQAMNCCSSSDLSVL
CC   FKLTENHINVRSLQKQKVKMATQLFSNTTASAIRRCYELGYEIENACETADFFKMINDWFDTFN
CC   SKLSTANSLKYSQPYGLQHDLQKDILDKTSLTMSGKIIEKSQRRLPFQHGIIVSNKSLDGLYIY
CC   LKEKYNMEYILTSRLNQDILEQFFGAMRSKGGLYDHPTPLQLKYRLRKYITAKNTELLTGKGNV
CC   EDGEEEEWLNLGDIDEMTEDAIEYVAGYMIKKLKLRDMSNKDATYTYVDEVSHGGLKKPSSQFV
CC   EQLKKLEAIFQLYAKEEFDLQINVKRTLLNAAEKLNVPLDIKQLFFKCRIYFRIKHLNKKLAIK
CC   NQKQRIVANSKLLKIKL.
XX
SQ   Sequence 3300 BP; 1133 A; 569 C; 659 G; 939 T; 0 other;
     cataatggaa taactataag gtggtctcgt ttgaaaaagc tcgagtgttt ctcatgctta        60
     cggggtctgt tctcactctg attttgacag ttgacaggtt gtgcgaacga atttttattt       120
     tatttgttaa cccttgggag tgcgtaaaaa atgtcgtttt gtgaattttg ttgtgcggtc       180
     gtaaaaactg aaggagtcaa attcatccgt gttcccaaag aagatcggaa aagaaaattg       240
     tgggaagaat ccttaggatg cagtttggct cataatgcca ggatttgcga cacacacttc       300
     aaaggatcgg atttttacgg agaaacaaag accaaagagg aacgaaagag aaggcgtttg       360
     atgccaaacg ccttgccaag acagcctacc ccggagccgg aaagtatccc gaccgtcaaa       420
     cctggatatt caaatgcata cacacaaaca gagtaagtcc gaaatgcagt ttctaaataa       480
     attttttgga aattgaaaaa aagttaggtt aggttgagtt aggaaaaaaa gtgatacaaa       540
     gcaaaaaaaa gtgaattgaa tatatttatg tatgtaaaaa cacacaaaat tgttgcatcc       600
     atatgtgcat acatacatat taaagtgtaa acagaatcgc aaagagttta tttggcacat       660
     cttatatata ttttcgaatg atttttaaaa tacatttgtt cttttgatat tcagcatcga       720
     cttggaaaat tttaaactga agcaaaaaat ttcggagctg gaaaaggaaa ttcaccatct       780
     gcgccaacag ctgtcggagt cggacgcatt gcggcagggt ctgactaaaa tcttcaccca       840
     aaaccagata aaaatgttgc ccaattgcgg caaaagaatt aggtacaact cgtcggacat       900
     gtcagaagca atttgccttc atgctgctgg accacgggct tacaaccacc tgtatagaaa       960
     aggatatcca ctacctagcc gtgcgactct atacaggtgg ttgtcagaag tcgaaataaa      1020
     aacggggact ctcgacatag tcatggactt gatgaagaac gaggacatgg atgaggctga      1080
     caaggtttgt gtcttggcct tcgacgagat gaaggtttct gctgcatacg aatatgacag      1140
     cgctgcggac gcagtgtaca agcccgcaag ctatgtccaa ttggccatgg ttcgaggatt      1200
     gaaaaaatcg tggaagcagc cggttttttt taactacaac actgccatgg atgcctgtac      1260
     cttgaaagca ataacaacca agctctacaa gtcaggatac attgttgttg ctattgtgtg      1320
     tgatttgggg cccggaaatc aaaagttgtg gagggagttt ggaatatccg aaggtaaata      1380
     tgaaaaaaat catttcagaa atttctaaaa tatttttttt ttattttaga aaatacctgg      1440
     tttagtcatc cagtggatcc agctctcaaa atttttgcat tttcggatgt gccacacttg      1500
     atcaaattgg ttcgaaacca ttatgttggg tcagggcttt taatcagcgg gactaaattg      1560
     acaaaaaaca cagtccaaca ggcaatgaac tgctgttcca gctcagacct gtctgtcctt      1620
     ttcaagctaa ctgagaacca catcaatgtt cgatctcttc aaaaacaaaa ggttaaaatg      1680
     gcaacgcagc tattttcaaa cacaacagca agtgccatca gacgctgcta tgaattgggc      1740
     tatgaaatag aaaacgcatg tgaaacggct gattttttca aaatgattaa tgattggttt      1800
     gacacgttta attcaaaatt atctacagca aattcattaa agtatagtca accgtatgga      1860
     ttgcagcacg acttgcaaaa agatattttg gataaaacat ctctaacaat gtctggaaaa      1920
     ataattgaaa agtcgcaaag gcgtttacca tttcagcatg gaattatagt gagcaacaaa      1980
     tcactggacg ggctatatat ttatttaaag gaaaaatata atatggaata cattctgaca      2040
     agccgattga atcaagacat tcttgaacaa ttctttggtg ccatgaggtc aaaaggcggc      2100
     ctgtacgacc atccgacgcc actacagctt aagtatagac taagaaaata tattacaggt      2160
     atatttgagc aacaaaaaca gcaacgaatt aacttgtgat atgacaaatt agttaatgtt      2220
     tatattgtag caaaccccgt gattgttggt agttatgtct tgtcctttgt tctataaatg      2280
     tttataaatg ccattataga tttttaataa cattcacatt tttcgcagcc aagaatacag      2340
     agctgctgac aggcaaagga aatgtcgaag atggtgaaga agaggagtgg ttaaatttgg      2400
     ggttcaaaaa agaaaaagac tgtgatgact cccaatgtga cgatgccttt cagacggaag      2460
     gaaataaaga aaatgagact gaatactgac actgtgatcg aaatacctga ccatctgaca      2520
     agtgatattg acgaaatgac tgaggatgcc atcgagtacg ttgctggata tatgataaaa      2580
     aaactgaaat tgcgtgacat gtcaaataaa gacgcaacgt acacatacgt ggatgaagta      2640
     tcgcacggcg gtcttaaaaa acccagctcc cagtttgttg aacagctaaa aaagctagag      2700
     gcaatttttc aactttacgc caaagaagaa tttgacctac aaataaatgt gaagagaacc      2760
     ctgttaaacg ctgccgaaaa gttaaatgtc ccattagata taaaacaatt attttttaag      2820
     tgtaggatat attttagaat taagcattta aataagaaac tggccataaa aaatcaaaag      2880
     cagcgcattg tggcgaattc aaaattgtta aaaataaaac tttgaaaagg attataacga      2940
     aaactacaaa tcaactgttc ttaatttgct tattttttta ttcagtatca tttcttgggt      3000
     tgcgcggtct tcctgagcat tcaaaatttg tttttccgac ttaaggtcaa aaattattaa      3060
     aaatctaaat atatttcaaa aattattaaa tttttcattt ttctttatag cattttagct      3120
     tatgtttcag cagtgggttg tgcatataca cacagccaga ctaagggtta aactcacttg      3180
     actcaaatcc atgctcaaaa caaactgaca gcaaaagctc ttttgagtgt ttttgaaaag      3240
     cttttttccc ataggctaga gctttttcta acgagaccac cttatagtta ttccattatg      3300
//
ID   CELE32A     repbase;    DNA;    INV; 364 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans CELE32A repetitive element (a consensus).
XX
KW   MITE; CELE32A.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-364
RA   Belknap R.W.;
RT   "CELE32A.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RP   1-364
RA   Jurka J.;
RT   "CELE32A.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 364 BP; 108 A; 67 C; 65 G; 114 T; 10 other;
     actgtagttt tcgctacgag atattttcgc gtcaaatatg ttgcttaata cgcattctca        60
     gaattttktt tttttttgaa cacggcccgg caagtggtac atccatgcaa atgcgctcta       120
     ctgataattt gagtktagac caggtttggg cgcgtkataa cgaaaaaagc tttggtccaa       180
     aaaatttaga atttattttc ggacattttt tatatgcatc acaaaaaaan tggaccaacc       240
     gtttttgaga aaaacgcgcc caaacgtcca ggtatacggt agacaaattg cgtacaggta       300
     ccacttctcg ggccgtgtga aatttaaaat cataatthtt ttccnnkama anaatcgatt       360
     tttc                                                                    364
//
ID   MARINER36_CB repbase;    DNA;    INV; 1619 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 1, Created)
DT   09-JUL-2004 (Rel. 1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA; mariner/Tc1 superfamily; Cb000358; MARINER36_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1619
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-1619
RA   Pavlicek A., Jurka J.;
RT   "MARINER36_CB - a family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are 99% identical to the consensus.
CC   MARINER36_CB contains 48bp-long imperfect TIRs and is flanked
CC   by TA target duplications. Similar to TC1, TC1_DM, TC1_XL, and
CC   MARINER15_CB. The central part shares similarity to mariner
CC   transposases.
XX
SQ   Sequence 1619 BP; 462 A; 363 C; 330 G; 464 T; 0 other;
     cagtaccggt caaaaggttg taaacgcaag gttttttgag cataactact ttttgagagc        60
     agatatcgag ccaaaatttt caccagatat ttctgtaaag gtttgccaaa tcgtggccaa       120
     gtttcataca aaaatttgaa aaaataacgt ttttttagag aaaaaattga attttcgaaa       180
     aaaaaatcaa attttgacct aaatttttca aaaaagcata atttccgaaa accactttta       240
     ttcaacacaa aacatataaa aaataacaaa ttgaatctaa tattttgttg caaagccacg       300
     agagtcaatg acagcctgac atctgcgctg catggagtcg agcaaattgt cgattactgt       360
     ctgtgggatc ttcttccatt cctcttccag ttgttggtac ttttcgtcca catttttggc       420
     ttttttccct gccaatcttc tctccagctc atcccataga ttctcgatcg gattgaggtc       480
     cggggactgg cttggccaat ccataacgcg aactctgcgg ctggagaacc aatcctaaaa       540
     tcgaaaatat tttgagacat cagaatcttt tgtaccttga cgaatttgga agtgtgtttc       600
     ggatcgttat cctgttggaa aacgatccca cgacccatgg ctttgtaatg tggcagcatt       660
     ttggattcta ggatatcctt gtagacgtag cgatccatga tagttgtgat gcgatgaatc       720
     ggtccgatgc cttttccgga aaagacaccc cagaccatac agctgcctcc accgtgcttg       780
     acggttggta attggtatct gggatcatac cgagagccaa ctggacgccg catccattga       840
     atcccgtcgc ttccgaaaag catgaacttg ctttcgtccg accacaaaac ctggttccaa       900
     tcttgacgag tccaattgag gtgttgcttc gcccaggcaa ctctggcttt tctgttcttc       960
     tccgaaatga acggcttctt aactggacgt cttcccatga ttccagctgc tctcaaacga      1020
     cgtttgacgg tcgaggtcga tggggaaacc ggactaatca aaaatacctc ccgtccaatc      1080
     gcaggcgcag tcaatcttgg attgcttctg gagacgcggg caatgttgat atcatccaga      1140
     tgagaagtga cacgtgggcg gccgatatga tactttactg gtttacatcc gtggctcttc      1200
     cagcgcttca gaaatctaga aatgcatggt tttcctacgt caaactgaga agctagatct      1260
     ccaagagatg ctccattttg gtgtccccga aaaatggctt tttgctcctc aacggtcaag      1320
     ttacgctttt tcccagctct tggcatacct gaaaactaaa agctactaaa aaaacattga      1380
     aaacattgat aaattttgaa aaaaaatagg tctgaaaaaa agggcgaaaa acccgatttt      1440
     ttcgaaaaac tgaaaaatct gcagaatcgc gtcagcgtgt ttgcgtacaa ctcgctgacc      1500
     gtagtcatac cttttgactt gcccctgtag ttaccagaaa aaaaatcacg gaatttggtt      1560
     gggtattcgt tgagttatgc tcgaaaaacc ctgcgtttac aaccttttga ccggtactg       1619
//
ID   SMU66331    repbase;    DNA;    INV; 2337 BP.
XX
AC   U66331;
XX
DT   02-DEC-1997 (Rel. 3.1, Created)
DT   02-DEC-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Schistosoma mansoni SmRT1 non-LTR retrotransposon, partial
DE   reconstruction of a retrotransposon, reverse transcriptase gene,
DE   partial cds.
XX
KW   SMU66331.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-2337
RA   Drew C.A., Brindley J.P.;
RT   "A retrotransposon of the non-long terminal repeat class from the
RT   human blood fluke Schistosoma mansoni. Similarities to the
RT   chicken-repeat-1-like elements of vertebrates.";
RL   Mol. Biol. Evol 14(6), 602-610 (1997).
XX
RN   [2]
RP   1-2337
RA   Drew C.A., Brindley J.P.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (08-AUG-1996)Molecular
RL   Parasitology Unit, Queensland Institute of Medical Research, Post
RL   Office, Royal Brisbane Hospital, Brisbane 4029, Australia.
XX
DR   GenBank; U66331; Positions       1    2337.
XX
SQ   Sequence 2337 BP; 673 A; 577 C; 454 G; 630 T; 3 other;
     gaattcctag ttgacgacct ctcaatcctg gctcccctgg ggaaaagtga tcacgccgtc        60
     ttatcattca gctttgtcag caaaacggag ctacgatatc ctactagcaa caagcgctgg       120
     aacttcaaac ggttgaatgt gttagcttta caggactatc tacaacaggt ggattgggat       180
     gttcaccctc aacttgaagt ggatgctcat tgggattttt tactgcacac gatcttatgt       240
     gctactgagc attcagttcc taaaatggtc ccaaaaagct acaagcaacc tccaatcatc       300
     aagaaccgca ctcgtcgttt gctaagccgc aaaaggcact gttgggctga atataaacga       360
     acbgataaca acggcgcgta caggcaatac aaacatataa ggaacatatg bacaaaggca       420
     ataagagaag acaggcttca gttccagacc aagcttatcg ataaattcgt ctccaatccg       480
     aaaagcttat tcagttacgc agcttctctt cgacaaggca aaactggagt ttcccaactg       540
     cttggtccta atggcccgac caataacgac agtgatgccg ctaacctttt ggctgaacaa       600
     tactcccaga cattccagct gacccacatc aaccatactg acgaaagctt cacctgcacc       660
     tgtacaggac tttccgaagt ggatctgagt gctgacctgg tgctccgtaa actgcagcac       720
     ctaagaaaag acacttctcc tggtccggat atggttcatt ccgctgtttt gagggaagca       780
     gcttcaatcc tggcgacacc acttagcgtg atgtttgcac actcgctaag cagaggcaaa       840
     ctaccggaaa tttggaagct ggcccacatc acaccaattt tcaaaggagg tcgacgcagt       900
     gaaccctcaa gctaccgacc agtggccctt ctctccatac cttccaaaat tatggaatcc       960
     ctaatatacg acggtatatt agaatactta tcatcctcaa agttcttctc acctcaacag      1020
     catggtttca gaaaaggtca ttcttgtatg accaacctgc tgactgcggt ggatagatgg      1080
     acaaccatcc ttgatcgcaa ggggaaggtt gacgtcatct acctggactt ctcaaaagct      1140
     tttgataggg tcaaccatat atgtcttatc aagaagctta gacgattggg tataaaaccc      1200
     cctttgattg attggctctc ttcatattta gaaaaccgac actttaaggt cagggttaac      1260
     ttcactctct ctcaggctat ggaatgtcct agtggggtcc cccagggctc aatactagga      1320
     cctcttctct tcttgattta cattaacgat cttcctcaac aagtttcatc tgacttattg      1380
     ctttttgctg atgatgtgaa actttggaga gagatacgta atcataatga tatactagtt      1440
     cttcaggagg atctgacccg acttcaaagt tgggcagacg acaacggact taccttcaac      1500
     acttcaaagt gcaaagtagt ccatctgaga catgttgcag accatagtta taacttaggt      1560
     aactcccctc tagaagtttc ccaagtcgaa aaagatttag gagtgttggt accctatgac      1620
     ctgaaatcgt atgcgaactg tgacaaaaac gcctttcaag caaaccttgc actggtaaca      1680
     ttgaagcgca tttttggcca gtttgacggt agaaccttcc acataatctt caacagtttt      1740
     attcgtcccc atttagagta cggaaacata gtatttcctc cctccctcca aaaggataag      1800
     gacactctgg aacgtataca acgtcgagcc acgaaatcag ttcggggact caaattcaaa      1860
     ccttacgaag agcgcctcca atcacttaac ctttacccgt tagagtacag gcgtcttaga      1920
     ggtgaccttc ttatgactta cagtatcctt aatacttctg gtcatcccct taaacatctt      1980
     cttaagctta gtcataacac taacctmaga ggtaacaccc agaaattgga gaccctatat      2040
     agcagaacag actgcagaca caacttctac tccgttagag ttgtcaagtg ctggaattcg      2100
     ctgccgactg agctagtcca agcgacctcc caggagtcct ttaagaggaa acttgactta      2160
     ttcttaagga ctaaggataa catattatta tgatttacca aattcttttt ttccctctat      2220
     tatcgttcat atacctaggt ttttgcctgg aggtattggt gatccactgc tactagacac      2280
     ggaagcccgt taagcgaaag cttcttctat tccatcctca accatttgaa ccatttg         2337
//
ID   LTRBLD_DM   repbase;    DNA;    INV; 399 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 3)
XX
DE   LTR from BLOOD LTR-retrotransposon - a consensus sequence.
XX
KW   Long terminal repeat; DMBLDLTR; LTRBLD_DM;
KW   BlOOD LTR-retrotransposon LTR; BLOODI.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1
RA   Bingham M.P., Chapman H.C.;
RT   "Evidence that white-blood is a novel type of
RT   temperature-sensitive mutation resulting from
RT   temperature-dependent effects of a transposon insertion on
RT   formation of white transcripts.";
RL   EMBO J 5, 3343-3351 (1986).
XX
RN   [2]
RP   1-399
RA   Wilanowski M.T., Gibson B.J., Symonds E.J.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila
RT   melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 92, 12065-12069 (1995).
XX
RN   [3]
RP   1-399
RA   Kapitonov V.V., Jurka J.;
RT   "LTRBLD_DM.";
RL   Direct Submission to Repbase Update (NOV-1998).
XX
CC   [3] (Consensus)
XX
CC   LTRBLD_DM is LTR of active BLOOD LTR-retroelement.
CC   Originally reported orientation has been changed based on the
CC   internal sequence BLOODI [2,3]. There are several identical
CC   copies
CC   of the LTRs in the drosophila genome.
XX
SQ   Sequence 399 BP; 113 A; 89 C; 87 G; 110 T; 0 other;
     tgtagtatgt gcatatatcg agggtacact gtacctataa gtacacagca acacttagtt        60
     gcattgcata aataaatgtc tcaagtgagc gtgatataag atcacccatt tatgctttaa       120
     gctaagtcag catccccacg ctggccgctg gccatatatg cgcataagct ctctctctct       180
     ctctcttata catatatata tacgctgctc ttctgccgct gtcgacggcg gcgcagtcgc       240
     agtatttagg taagattaga cactctgtag aggttaagcg ggcagaaccg tttctgctac       300
     tcgaagagat aagaagaaat aaaaaggtgg cctgacggct gcacccaact gcaaggaaaa       360
     cacgtgttct caattggtgg catatattgg tttattaca                              399
//
ID   CERP6       repbase;    DNA;    INV; 1940 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans transposable element - a consensus.
XX
KW   Repetitive element; CERP6.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1940
RA   Jurka J., Surzycki S., Belknap W.;
RT   "CERP6.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [1] (Consensus)
XX
CC   A palindromic sequence, distantly similar to TC5 DNA transposon
CC   at positions 228-310 and 1643-1725.
XX
SQ   Sequence 1940 BP; 665 A; 319 C; 328 G; 628 T; 0 other;
     ttaaaagcaa agggtgtgcg cctttaaagt gtactgtagt ctgaaagtat tgtttctgtg        60
     gcaaaatgtt ttaatcgaaa atctattaaa aatcgataaa tattccgcgg gacatggtac       120
     cgtattttta aaagaaaaat tgtaaagggt aatagttacc gtaataccct aacaagggaa       180
     gtctttgagg gggtccgtag atttggggtt ctcatgctaa aattcctaca gaagagtgtt       240
     agttatgatc tctccaaaaa atttagctgc ccaggtcaag tttcagcaaa gttatgacgt       300
     tttgaaattt cagttaaaaa caccattgaa atccactgtc ttaccatgca atccacgcaa       360
     atctcagctt gcgtgaccac cgaaaatgtg acacccacca cattgagttg aaaaatgtcc       420
     tcggtggccg agttgggagt gcgcgcgtct gataagattt aagctttggt tcgattcctt       480
     ctatttttga aatatttttg taagttgaat aaagttgtaa aacaactcat tcaaacattt       540
     ttgcgcattt ttaaagtgat tttattctta ttcgggaacc tagaatcatt gtccgcactt       600
     tttggaaatt tttatttttt tcatttttgc tcaaaatttc ttgatcaact ccaagcaaaa       660
     aattcaaaaa atttcatttt tctaaacaat tatgaaattg ctatgttgtt gttcagaaat       720
     gtatgaaacg tacattacac aagttttaac tctctattcg caagtaaacc gtcgaaatga       780
     tctacatctc acgaactttg tgcaaaatat ttaaccaact ttgaagttgc ataacttcgt       840
     tgagataaat tattttgaaa aatgatcaac taacaaaatg tttgttgaat aatagtgaac       900
     aaagttttaa ttataaactt tttgatacct tcagccacca aaaagttgtg accgttttcc       960
     aaaacacaat gttaatagaa aaactagcca aatgccaacc ttgttttctt ctttgtagct      1020
     ggaggtatca aaaagtttat aactaaaact ttgttcacta ttattcaaca aacattttgt      1080
     tagttgatca tttttcaaaa taatttatct caacgaagtt atgcaacttc aaagttggtt      1140
     aaatattttg cacaaagttc gtgagatgta gatcatttcg acggtttact tgcgaataga      1200
     gagttaaaac ttgtgtaatg tacgtttcat acatttctga acaacaacat agcaatttca      1260
     taattgttta gaaaaatgaa attttttgaa ttttttgctt ggagttgatc aagaaatttt      1320
     gagcaaaaat gaaaaaaata aaaatttcca aaaagtgcgg acaatgattc taggttcccg      1380
     aataagaata aaatcacttt aaaaatgcgc aaaaatgttt gaatgagttg ttttacaact      1440
     ttattcaact tacaaaaata tttcaaaaat agaaggaatc gaaccaaagc ttaaatctta      1500
     tcagacgcgc gcactcccaa ctcggccacc gaggacattt ttcaactcaa tgtggtgggt      1560
     gtcacatttt cggtggtcac gcaagctgag atttgcgtgg attgcatggt aagacagtgg      1620
     atttcaatgg tgtttttaac tgaaatttca aaacgtcata actttgctga aacttgacct      1680
     gggcagctaa attttttgga gagatcataa ctaacactct tctgtaggaa ttttagcatg      1740
     agaaccccaa atctacggac ccccctcaaa gacttccctt gtaaattcaa ttacctagtt      1800
     tttagaaaaa taaaaataga aaagcaattt aatttttttc aggaaataat tgccggaatg      1860
     cttgatctac caccgaaaaa gtggagaaaa cgagaaaccg atgaaatgtc gaagcagaag      1920
     tctcgtgctg aaaatttcaa                                                  1940
//
ID   PROTOP      repbase;    DNA;    INV; 3409 BP.
XX
AC   AC005453;
XX
DT   14-JUL-1999 (Rel. 3.4, Created)
DT   14-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Autonomous DNA transposon; a molecular fossil.
XX
KW   TIR; transposase; P-like DNA transposon; insertion element 1360;
KW   HOPPEL; PROTOP_A; PROTOP.; PROTOP.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3409
RA   Kapitonov V.V., Jurka J.;
RT   "PROTOP.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
DR   GenBank; AC005453; Positions     634    4052.
XX
CC   This mobile element encodes transposase distantly related
CC   to the P-element (position 970-2718).
CC   PROTOP has perfect 31 bp-long TIRs and it generates
CC   7 bp-long duplications of target sites upon its integration
CC   in the genome.
CC   Nonautonomous form of PROTOP is deposited in Repbase Update
CC   as PROTOP_A.
XX
SQ   Sequence 3409 BP; 1264 A; 533 C; 575 G; 1037 T; 0 other;
     caaagacact agaataacaa gatgcgtaac gccatacgat tttttggcac acgatttttt        60
     tgccgtggct ctagaggtgg ctccaggctc tctcgaattt ttgttagaga gcgagagagc       120
     gaagagcgct acagcgaaca gctcttttct acgcatacag tgatagcaga caactttatg       180
     tgtgcacacg tatgctcatg cattgtaaat ttgacaaaat atgcccttca ccgtagaagt       240
     tcttagactt taaatctata ttatttttga tcaattggca tcatgcgaaa aattcttgtt       300
     tgcattgcct taacgttatt attatttgaa aacagattag aaatagccaa atccatgtac       360
     atatcataac aaaataaatt tcaaaaatta ctttatatta gaatatttgt cattagagta       420
     ttcagcttgc ggcgtgtgaa aaattaataa ggcaatgatt gttgagtgct tgtgtccgca       480
     cttcgtgcct caagatatga ccaaaacaaa gacactagaa taattctagt gtctttgatg       540
     tgacttttgc aataaacagt tttcatattc atatttattt tactaaagac aaattagaga       600
     gccaatttag aattaaaatg ctgaggaaag aaaactcaaa cctaaaaaaa aataagttag       660
     gttggaatct aagaccgaaa aaaacatata ttctgaaata gataaaatta atttaacagg       720
     aaatgaaaaa atattaacga aaatgctttt taaggaaaaa agggcacaaa tacaagatgg       780
     aatgattgcg aaaaattgtt tgctcagagc atatattaca ggtccacttt gacatatacg       840
     ttcttaagag actcgctgaa attaaatttt ccaagtccat catctttgca aaagtggaac       900
     agcataaaaa agttacagcc aggagacaac gaatgtttgt actcagccct taaagaatct       960
     ataaaagaaa tgaatgcatc tgataaagag tgcatattgg cttgtgatga agtagcgata      1020
     aaaaaaaacc taacttacaa tgtgtcagtt gatataatag atggaataga gcatttactt      1080
     gatcgctcta ataaaatggg aagccatatt tgcgtatttg ttgttcgggg tatttaaaaa      1140
     aaatggaaat ttatattaaa ctattttgtg gccgaaacga atataaaagg cgattgcgta      1200
     aaaagtctta tttataaaaa tattattatt gctgaaacaa ttgggttcaa agtaaggggt      1260
     gttgtgtacg atcaaggagg taacaataga aaatgtacct cactacttga agtcaccaat      1320
     gagaaatctt actttacctt aaataataaa aaatattata tgttttatga cattccgcat      1380
     cttttcaagt ctgtaaggaa taattttcta agagctaatt ttgaaacccc tgacggacta      1440
     gttgactttg atgtcattcg agaggtttac gaattagatc atggatcagt aacgagaatg      1500
     actaaattaa caaggagtca cgttaatcca accagatttg atctaatgcg cgtatgtttg      1560
     gcaactcaaa cacttagcca cactgttgca gcggcaatta agacttgtaa ccaaaacaag      1620
     caattacatc gaaatagttc cgaagttgca gcttctacgg ctgcatttgt ccaaaaagtt      1680
     aatgattact ttgattgcct gaatagcaga gtattaactg acaaaaaccc catgaaattc      1740
     gcgctccaag ttaacaatgg agtttggaac aaactaaagg aaatgcagga atacctaaag      1800
     agcgttaaat atcacgggaa taaaatatat tgtgttgatg gcttgatcca aactactgaa      1860
     gctatatttg gactcctcga agatctcttt aaggatcaca cagaccactt tttcttttta      1920
     actagtagat taaaccagga tgcccttgaa aatatatttg cgtgcgttcg agcaaaaggt      1980
     gataactgca gaaatccttc agttaacgaa tttaatataa taattgccaa gctcatatct      2040
     ctacacattt ttaaattttc acaaaagtcg aattgcgaat cagatgatga tgttatgttg      2100
     ccaatagagt tcgattcgat aatatatcag cctttcgttg aaaaaaagaa atacagcaac      2160
     aagaatactc tgtatcattt tccaaaatcg tgcaagacaa tgagaggtac tttgaccaaa      2220
     atatagataa ctttgtgcaa tgatgtaccc attgaattaa cttccagtag atattttgtt      2280
     ggatatattg ctaaggaatc cagttgcgat aaatgcagat cggtaatttt aaaagaaacc      2340
     gagcatttaa cagctccatc agagcttttt atacatgaaa aaaactactc aatagaatcg      2400
     gacttcggga aattaaaggc accatctgat ttatttttta atatttgcaa aatacacatt      2460
     aaagctttcg aaaatatttt taaaaataat aaaaaacaaa tgtgtataaa aaaatgtatt      2520
     attgagcaat gcattaagtg cacaaatgaa agtagtgcct tctcattatg gttttatgaa      2580
     aataatgaat gttatgcaca tagaacagat cttttaaaca aacttataaa agttttgctt      2640
     tttaagcatt gtaagtggac tgtgatagct gatagacaaa aaaagcaagc taagctcagc      2700
     attctatctc ataaataaaa aaaatgagcg ttatttaaat aactgacgac tgaaaaatcg      2760
     agcaatatat aataaaaaac aatagttaga aaaataactt aattggggaa tatggaaatg      2820
     ttaatgttaa acattaaaat atttcaagtc gacttgaagg tcatatacgt aaatataaga      2880
     caccattaca attgtaatgg cctccccgtg gtgttccctg ggtaccgatt attacacata      2940
     ttacacataa ataattatga acataaatat aaatatgtaa acggtagcta attcgagcgg      3000
     cgattttaac aaacgaattt aaaaagcttt aaaattaaaa aattttaaaa tttaaattaa      3060
     aattttaaaa ttataataac aagggcgcga attttttaaa attattttat tttatcatat      3120
     tgctacgaaa ttggcaaaaa aactacccta atatgtacaa tgtaaattca tttcttagat      3180
     cagaattgat ttcggcccga aaatcgtctt ctagcacaac acgcacactt atacgcgttc      3240
     tcgtctcttg tttttactca cacaagcaag caaattctat ttttagattt cttacgttct      3300
     cagcgtgagc gagcggaaag acagcaattt tggccgtcac caaaaaagtg gctgcatagt      3360
     gccaaaccaa tgtatggccg ttacgcatct tgttattcta gtgtctttg                  3409
//
ID   PERERE-3    repbase;    DNA;    INV; 3373 BP.
XX
AC   BN000794;
XX
DT   04-SEP-2005 (Rel. 10.08, Created)
DT   04-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Schistosoma mansoni Perere-3 non-LTR retrotransposon (EST).
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; GAMERA; SR2;
KW   PERERE-3.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-3373
RA   DeMarco R., Machado A.A., Bisson-Filho A.W.,
RA   Verjovski-Almeida S.;
RT   "Identification of 18 new transcribed retrotransposons in
RT   Schistosoma mansoni.";
RL   Biochem Biophys Res Commun 333(1), 230-240 (2005).
XX
DR   EMBL/GenBank/DDBJ; BN000794; Positions       1    3373.
XX
FH   Key           Location/Qualifiers
FT   CDS           218..3193
FT                 /product="PERERE-3_1p"
FT                 /translation="MRPMHLLTTRAKIFIGTWNVRTMWETGRVFQISAEMR
FT                 KYNLEVLGISETHWTQVGQQRLSSGELLLYSGHEEENAPHTQGVALMLSRK
FT                 AQNALIGWESHGPRIIKASFKTKREGITMNIIQCYAPTNDYDEDAKNQFYD
FT                 RLQSIFEKCPTKDLTILMGDFNAKVGKDNTGYEDVMGQHGLGGRNENGDRF
FT                 ANLCAFNKLVIGGTIFPHRNIHKATWISPDHTTQNQIDHVCINKKFRRTME
FT                 DVRTRRGADIASDHHLLVAKMKLKLKKHWTMARTTSQKFNMAFLRDADKLN
FT                 EFNIALSNRFEAFHDLLNGEGTTIESSWKGTKEAIVSTCQEVLGQKKHHHK
FT                 EWITVGTLDKIEARRNKKAAINISRTRAEKAKAQAEYTEANKQVKRSIRTD
FT                 KRKYVEDLAMTAEKAAREGNMRQLYDTTKKLAGNYRQPERPVKNKEGKVIT
FT                 DIEEQRNRWVEHFKELLNRPAPLNPPNIEAAPTDLPIDIGPPTIEEISMAI
FT                 RQIKSGKAAGPDNIPAEALKANVAATAKILHILFSKIWDEEQVPKDWKKGL
FT                 LIKIPKKGDLSKCDNYRGITLLSIPGKVFNRVLLNRMKDSVDAQLRDQQAG
FT                 FRKDRSCTDQIATLRIIVEQSIEWNSSLYINFIDYEKAFDSVDRTTLWKLL
FT                 RHYGVPEKIVNIIRNSYDGLNCQIVHGGQLTDSFEVKTGVRQGCLLSPFLF
FT                 LLVIDWIMKTSTSGGMHGIQWTGRMQLDDLDFADDLALLSQTQQQMQEKTT
FT                 SVAAASAAVGLNINKGKSKTLRYNTICTNPITLDGEALEDVEIFTYLGSII
FT                 DEHGGSDADVRARIGKARAAYLQLKNIWSSKQLSTNTKVRIFNTNVKTVLL
FT                 YGAETWRTTKAIIQKIQVFINSCLRKILRIRWPDTISNKLLWETTNQIPAE
FT                 EEIRKKRWKWIWHTLRKSPNCVTRQALTWNPERQRRRGRPKNTLRREIETD
FT                 MRRMNKNWKELEKKAQDRVGWRKLVGGPCSIESYRRK"
XX
SQ   Sequence 3373 BP; 1200 A; 749 C; 788 G; 636 T; 0 other;
     caattactcc gcctgtagct cctccagggg ctactgccgg tcccaagccc gggtaaagga        60
     ggagggttgg gcatggggtt agcgacccca tcccgtagaa aatcaacccg ctaaaaaaac       120
     gctaaccaga aaaaatcatt caaaccattc aaactctgcc ctgggagtag aaggaaaagt       180
     gacgtctcat gatgaaagcc gagttccttc ggaagtcatg aggccgatgc accttcttac       240
     aaccagagcg aaaattttta taggtacatg gaatgtccgg acaatgtggg agaccggaag       300
     agtcttccaa atttctgcgg aaatgaggaa atacaacctg gaagtgcttg gaatcagtga       360
     aacacattgg acgcaggttg gacaacaacg actgtcttca ggggaacttc tgttatactc       420
     cggtcatgaa gaagaaaatg ccccacatac acaaggagtg gcactgatgc tgtctagaaa       480
     agcacaaaat gcacttatag gatgggaatc tcatggaccg aggatcatca aagcctcctt       540
     caaaacaaag agagagggca ttacaatgaa catcatccaa tgctatgcgc cgaccaacga       600
     ctacgatgaa gacgctaaaa accaattcta cgataggctg cagtcaatct tcgagaagtg       660
     cccaaccaag gacctgacca ttctaatggg agatttcaat gccaaggttg gaaaggacaa       720
     cactggatac gaagacgtca tgggacaaca tggactggga ggaaggaacg aaaacggtga       780
     tagatttgca aacctatgtg ccttcaataa actggtcata ggtggcacca tattcccaca       840
     cagaaacata cacaaagcca cttggatttc accggatcac actacacaaa atcaaatcga       900
     ccatgtctgc atcaacaaaa agttcaggag gacgatggag gatgtgagaa ccagaagagg       960
     agctgatata gcatccgatc accatttgct ggtcgccaag atgaaactaa aactcaagaa      1020
     gcactggaca atggcgcgga caacatcaca aaaatttaac atggcctttc ttcgagatgc      1080
     tgacaaactc aacgaattta acatagccct cagcaacagg ttcgaggcct ttcatgacct      1140
     actcaatgga gagggaacca ccatagagag cagctggaaa ggtaccaagg aggcaatcgt      1200
     ttcaacatgt caggaggttc tgggccaaaa gaagcaccat cacaaggaat ggatcactgt      1260
     tggtacactg gataaaattg aagcaaggag gaacaagaag gcagcaatca atatcagccg      1320
     aacaagagca gaaaaagcca aggcacaagc cgaatacaca gaggcaaaca agcaagtgaa      1380
     gaggagcatc aggaccgaca aacgtaaata tgtggaagat ttagcgatga cagcggaaaa      1440
     ggctgcaaga gagggaaaca tgagacaact gtatgataca acaaagaaac tagctggaaa      1500
     ttaccgtcaa ccagaaagac cagtgaaaaa caaggaaggc aaagtaatca ccgacattga      1560
     agaacaacga aacaggtggg tagaacactt caaggaactc ttgaatcgac cagctccact      1620
     gaacccaccc aacatcgaag cagcacccac agacctccca atcgatattg gcccaccaac      1680
     aattgaagag atcagcatgg ccattagaca aatcaagagt ggcaaagcag cgggaccaga      1740
     caacatcccg gcagaggcac tgaaagcaaa tgtagcagca actgccaaga tactccacat      1800
     cctcttcagt aagatttggg atgaagaaca agtaccaaaa gactggaaaa aaggacttct      1860
     gatcaagata ccaaagaaag gcgatctcag caagtgcgac aactacaggg gcatcactct      1920
     tctctcaata ccaggaaaag tcttcaacag agtattgtta aacaggatga aggattccgt      1980
     ggacgcccaa cttcgagatc aacaagctgg attccgtaaa gatagatcgt gcacagatca      2040
     aatcgcaact ctacgtatca ttgtggaaca atcaatcgaa tggaattcat cactctacat      2100
     caacttcatt gactacgaga aggcatttga tagcgtggac aggacgacac tatggaagct      2160
     tcttcgacac tacggcgtgc ctgagaagat agtcaacatc atacggaact cctatgatgg      2220
     actaaactgc caaatcgtcc acggaggaca actcaccgac tcgttcgagg taaagaccgg      2280
     tgttaggcaa ggttgcctac tctcaccctt tctctttctc ctggtgatcg actggattat      2340
     gaagacgtca acatctggag gaatgcacgg gatacagtgg acaggcagga tgcagcttga      2400
     cgatttagac ttcgcggatg atctggctct tctatcacaa acgcaacaac aaatgcagga      2460
     gaaaacgacc agtgtagcag cagcctcagc agcagtaggt ctcaatataa acaaagggaa      2520
     aagcaagact ctccgataca atacaatatg caccaatcca attacacttg acggagaagc      2580
     tttggaggat gtggaaatct ttacatatct gggcagcatc attgatgaac acggtggatc      2640
     agatgcagat gtgagggcgc ggatcggcaa agcaagagca gcatacctac agctgaaaaa      2700
     catctggagc tcaaaacaat tgtcaaccaa caccaaggtt agaattttca atacaaatgt      2760
     caagacagtt cttctgtatg gggcagagac gtggagaact acgaaagcca ttatccagaa      2820
     gatacaagtg tttattaaca gctgtctacg caagatactt cggatccgat ggccagacac      2880
     tatcagcaac aagttactgt gggagacaac aaaccagatt ccagcggagg aagaaatcag      2940
     gaagaagcgc tggaagtgga tttggcacac cttgaggaaa tcacctaatt gcgtcacaag      3000
     acaagccctc acatggaatc ctgaacgtca aaggagaaga ggaagaccaa agaacacatt      3060
     acgccgagaa atagagacag acatgagaag aatgaacaag aactggaaag aactagaaaa      3120
     gaaggcccag gacagagtgg gttggagaaa gctggtcggc ggcccatgct ccattgagag      3180
     ttacaggcgt aagtaaggca acaaagagta agtgcactgg tagaagagga acaagcccta      3240
     cgcgatctga acctgcagaa taacgcagta aactattttg taataacttt ccctttttgt      3300
     actcgaaccg cgtctttcaa tttcaaatat atctgttgtg ccagcaaaaa aaaaaaaaat      3360
     aaataaaaaa aaa                                                         3373
//
ID   CLAI_CT     repbase;    DNA;    INV; 112 BP.
XX
AC   M24188;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   C.thummi ClaI repeat.
XX
KW   CLAI_CT; ClaI repetitive sequence.
XX
OS   Chironomus thummi
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Chironomoidea;
OC   Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-112
RA   Schmidt R.E., Godwin A.E., Keyl G.H., Israelewski N.;
RT   "Cloning and analysis of ribosomal DNA of Chironomus thummi piger
RT   and Chironomus thummi thummi.";
RL   Chromosoma 87, 389-407 (1982).
XX
DR   GenBank; M24188; Positions       1     112.
XX
SQ   Sequence 112 BP; 50 A; 11 C; 13 G; 38 T; 0 other;
     tatatttttt tgaaaagagc ctactatgat cgaaaacaaa aaatgcttta aatagcattt        60
     taaaacatat ctggtattat aaatgataaa gaatgcaaat ttcgtataaa ta               112
//
ID   GYPSY_DM    repbase;    DNA;    INV; 2790 BP.
XX
AC   X03734;
XX
DT   22-DEC-1995 (Rel. 2, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. melanogaster retrotransposon gypsy gene fragment for reverse
DE   transcriptase-like enzyme.
XX
KW   retrotransposon; reverse transcriptase; Copia-like element;
KW   GYPSY_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2790
RA   Yuki S., Ishimaru S., Inouye S., Saigo K.;
RT   "Identification of genes for reverse transcriptase-like enzymes
RT   in two Drosophila retrotransposons, 412 and gypsy; a rapid
RT   detection method of reverse transcriptase genes using YXDD box
RT   probes.";
RL   Nucleic Acids Res 14(7), 3017-3030 (1986).
XX
DR   GenBank; X03734; Positions       1    2790.
XX
CC   CDS <1..>2790
CC   /note="reverse transcriptase-like enzyme (930 aa);
CC   /codon_start=1.
XX
SQ   Sequence 2790 BP; 859 A; 692 C; 597 G; 642 T; 0 other;
     gggagaacct taaagatgct aatcgatacg gcgcgggcaa aaaactacat taggcccgta        60
     aaggagctga aaaatgtaat gccggtcgcc agccctttct cggtgagctc aatacaccgc       120
     tccaccgaaa tcaaacacaa atgcttgatg aaagtcttca agcacatctc cccatttttt       180
     cttttggatt ctctcaatgc gttcgacgct atcataggct tggacctgtt aacacaggcc       240
     ggggtaaaac tcaaccttgc agaggactcc ttagaatacc agggcatcgc tgaaaagctt       300
     cattatttca gctgccccag tgtaaatttc actgatgtaa acgatattgt tgtacctgac       360
     tccgttaaaa aggagttcaa ggacacaata ataaggagga agaaagcttt ctccacaaca       420
     aatgaagctc ttccttttaa caccgctgtc actgccacaa ttcggacagt tgacaatgaa       480
     ccggtgtact caagagcgta cccaactctt atgggtgtct ccgactttgt gaacaacgag       540
     gtcaaacaac tgctgaaaga cggcattatc aggccctcaa ggtctcccta taacagcccg       600
     acctgggttg ttgacaaaaa ggggaccgac gcttcgggaa acccaaacaa gaggttggtc       660
     attgacttta ggaagctaaa tgagaaaact attcctgacc ggtacccgat gcctagcatt       720
     cccatgattc tagcgaatct gggcaaggca aagttcttca ctacccttga tcttaagtca       780
     gggtatcatc aaatttacct cgcggaacac gaccgcgaga agacatcgtt ctcggtgaat       840
     ggtggtaaat acgagttttg ccgtctaccg ttcggcttga gaaatgcaag cagcattttt       900
     caaagagccc tagacgatgt gcttagagag caaatcggga agatatgtta cgtctatgta       960
     gatgacgtca taattttctc tgaaaacgag tccgaccatg tccgccacat cgatacagta      1020
     ctaaaatgcc tgatcgatgc caacatgaga gtaagccagg agaaaactag attctttaaa      1080
     gagagtgtag aatacctcgg ctttattgtc agtaaggacg gaactaaatc cgatccagag      1140
     aaggtgaagg ccattcagga gtaccctgaa ccagactgcg tttacaaggt taggtccttc      1200
     cttggtttag ccagctacta cagagtcttc atcaaagact ttgctgccat agcccgcccg      1260
     atcaccgata tcctaaaagg ggaaaatggt tcggtgagca aacacatgtc taaaaaaatt      1320
     cctgttgagt ttaatgaaac tcaacgcaac gcgttccaaa gactgcgaaa catactagca      1380
     tccgaggatg tcatactcaa ataccccgtc tttaaaaagc cttttgacct tactacagat      1440
     gcttcggcaa gtggtatcgg tgcagtccta tcccaggagg gcaggccaat caccatgata      1500
     tcgcgtaccc ttaaacagcc cgagcagaac tacgccacaa acgaaaggga attgctggcg      1560
     attgtatggg ccctaggtaa gttgcagaac ttcctgtatg gctctaggga gattaatata      1620
     tttaccgacc atcaacccct cactttcgct gttgccgaca ggaacacgaa tgccaagata      1680
     aagaggtgga aatcttacat agaccagcat aatgccaagg ttttctacaa acctggcaaa      1740
     gaaaatttcg tggcagacgc cctctctagg cagaatctga atgccttaca aaacgaaccc      1800
     caatcagacg ctgcgaccat tcacagtgag ctctccctga cctacacggt cgagacaaca      1860
     gacaaaccgt taaattgctt caggaaccag atcattctgg aggcagcacg ttttccgctc      1920
     aaacggaacc tggtgctctt tcgaagcaaa tctcgccact tgatcagctt tactgataaa      1980
     agttggctat taaaaacact taaggaggtg gtaaaccctg acgtcgtgaa cgctattcac      2040
     tgcgacctgc ccactctggc aagcttccaa cacgacctca ttgcccactt tccagccacc      2100
     caatttcgtc actgtaagaa tgtcgtgtta gacataaccg acaaaaacga acagatcgaa      2160
     atcgtcactg ctgagcacaa ccgcgctcac agagccgcac aagaaaacat taaacaagtc      2220
     cttcgggatt attactttcc caaaatgggc agtttagcta aagaagtagt agctaattgt      2280
     agggtctgca cccaagcaaa gtatgacagg cacccgaaaa agcaagagct cggggaaacg      2340
     cccataccca gctatacagg tgagatggtg catattgaca tattctcaac cgacaggaag      2400
     ctattcctga cgtgtattga caaattttct aaatatgcaa tagtgcaacc agtggtgtct      2460
     agaacaatag tggacatcac agcacccctg ttgcagatca ttaacctgtt ccccaatatc      2520
     aaaacggtct attgtgacaa tgagcccgca tttaactcag aaactgtcac ctcaatgctc      2580
     aagaacacct tcggcattga catagtaaat gcgcccccac tccacagctc gtccaatggc      2640
     caagttgaac ggttccacag cacattggca gaaatcgcca ggtgcctgaa gttggacaaa      2700
     aaaacgagtg acacagtaga actaatcttg agggcgacga tagaatataa caaaaccgtg      2760
     cactcagtta ctcgtgagaa ccaattgagg                                       2790
//
ID   LGRP1       repbase;    DNA;    INV; 213 BP.
XX
AC   L42498;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Leishmania gerbilli DNA repeat.
XX
KW   LGRP1; Repetitive element.
XX
OS   Leishmania gerbilli
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-213
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42498; Positions       1     213.
XX
SQ   Sequence 213 BP; 49 A; 65 C; 68 G; 31 T; 0 other;
     gcaagaatca agaggccgtg tcagagatgg gtcgaagggg gacggtggga gcgggaaaga        60
     gacgacgggc acgtggcgac gctggaaaga aagaaaagca gaagacgcgt attccctttt       120
     gctgatgtgt gcccgcctct ctgccacaga ccacgagctc agctccactc caccctaacg       180
     ccccctcgcc gtgcggccct gtcgcaggct ccc                                    213
//
ID   ARS312_DM   repbase;    DNA;    INV; 265 BP.
XX
AC   J01068;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. melanogaster autonomous replication sequence (ars) 312.
XX
KW   Repetitive sequence; Origin of replication; ARS312; ARS312_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-265
RA   Selick H., Kauffman S.;
RT   "ARS312_DM.";
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania.
XX
DR   GenBank; J01068; Positions       1     265.
XX
SQ   Sequence 265 BP; 77 A; 54 C; 29 G; 105 T; 0 other;
     ccacttcccg tccaaaacta ctacgcccaa gcctataaaa aatgttttga tatattttca        60
     tatttattaa tattattgtt attattatta tttattagtc ttgtaaattt ctatcgattt       120
     gccaaaaagc tttttgttac gatcactcta acgcactcta acactcaaaa gtgccgcacc       180
     cacacttttg ataaattttt taatatattt aaatattttg ttgcgaactg ctttctttcc       240
     ttagtgacag tgcctctagc tcagg                                             265
//
ID   BMMAR3      repbase;    DNA;    INV; 1307 BP.
XX
AC   AF461149;
XX
DT   12-SEP-2002 (Rel. 7.08, Created)
DT   12-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   Bombyx mori DNA transposase gene BMMAR3, complete cds.
XX
KW   DNA transposon; Interspersed Repeat; BMMAR3; complete cds;
KW   transposase gene.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Bombycoidea; Bombycidae; Bombyx.
XX
RN   [1]
RA   Robertson M.H., Walden K.K.;
RT   "Bmmar3, a second mori subfamily mariner transposon from the
RT   silkworm moth Bombyx mori.";
RL   Insect Mol. Biol0-0 (2002)In press.
XX
DR   Genbank; AF461149; Positions       1    1307.
XX
SQ   Sequence 1307 BP; 411 A; 243 C; 297 G; 356 T; 0 other;
     actagtcagg tcataagtat tgtcacacag taaaaacttt tcttttagaa tgctggccac        60
     aaaaaagttt attgaattcg aatttcgaat tgttcatgaa aataaaaatg tatactttta       120
     gaattttact catttttaaa tatggagtgg acgcttaaag aagaccgtgt tgcagttatt       180
     gcgttgcatc gttgcggtta cgcgccaatt caaattttta acatactgaa aaatttgaat       240
     ataaccaaaa gattcgttta tcgtaccatc aaacgataca atgaagactc tagtgtagat       300
     gacaggtcaa gaagtggtcg ccctcggtct gttaggactc cagcagtgat aaaagctgtg       360
     aaggcgcgaa ttcaaagaaa tcccaaacgt aagcagaaac tgttggccct tcagatgggg       420
     ttaagcagaa ccacggtgaa aagggtgtta aatgaagact tagggcttcg ggcatatcga       480
     agaaaaacag gacatcgttt gaatgctcgt ctaatggacc tgagactgaa gagatgccgc       540
     gctttgttga agcggtacgc gggaaaaaaa tatcgggaaa ttcttttttc ggatgaaaaa       600
     atttttaccg tagaagagag ctacaacaaa caaaatgata aggtgtacgc acacagtagt       660
     gaagaagcga gcaaccgtat tccgcgtgtc caacgaggtc attttccatc ctcgctcatg       720
     gtatggttgg gagtttctta ttggggctta acagaggtac atttttgtga gaaaggtgta       780
     aaaacgaatg cagttgtgta tcaaaataca gtcctgacga accttgtgga acctgtttct       840
     cataccatgt tcaataacag gcactgggta ttccaacaag attcggcgcc agctcataga       900
     gcgaagagca cacaagactg gctggcggcg cgtgaaatcg acttcatccg gcacgaagac       960
     tggccctcct ccagtccaga tttgaatccg ttagattaca agatatggca acacttggag      1020
     gaaaaggcgt gctcaaagcc tcatcccaat ttggagtcac tcaagacatc cttgattaag      1080
     gcagccgccg atattgacat ggacctcgtt cgtgctgcga tagacgactg gccgcgcaga      1140
     ttgaaggcct gtattcaaaa tcacggaggt cattttgaat aaactttagt gtcataagaa      1200
     tctatgtttt gttaagttca ttttggtata tgaatggtta cataatgaat aaacttgttt      1260
     caattatttt acattaaaca tgtgacagaa tttatgacct gactagg                    1307
//
ID   Saci-2_INT  repbase;    DNA;    INV; 4946 BP.
XX
AC   BK004069;
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Schistosoma mansoni Saci-2 LTR retrotransposon mRNA, complete
DE   sequence.
XX
KW   LTR retrotransposon; Schistosoma mansoni; Saci-2; Saci-2_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-4946
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RP   1-4946
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004069; Positions       1    4946.
XX
CC   Key Location/Qualifiers
CC   CDS 268..4416
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04499.1"
CC   /db_xref="GI:44829171"
CC   /translation="MEVFTKKRDENLNEPPVIPVKPTTGSAPRQPPLLENSSDYTVWK
CC   FKVAAYLRKVPASEQFDYLVSYLSDEATKRAIVNGFAADNTLAQNWKILDDCFSTPVD
CC   PQQAAIRFLSRHQTPGENPMDYFNSLQQMAVQAFPCLDATGRDELIKSRFVEGLLSSS
CC   LKEHFLLNPPTDINSLKRVTFRFMAAEQLKSPLDMHQPTAMAVMQPTKASRPLNPQRI
CC   SNVTRSSHWNSSRRQFNPTEKKWRPTNSYHGRQSECPYCRRFGKNAKKCGHNRFGNTS
CC   KPYIFHLSSYANHVRPITIKARVQGIDIEVLLDTGASVSLIKSEFLGRLNRKVQQTRH
CC   PSTLLTASGDPLKVNSKVWLDLMIDRHSFRHGFFVCPTLTWDMILGVDFMLEHKACIF
CC   MDSLEAKFGETKIRLHHTNTPFKAVSYVGISDLVRQVNDNRTLKEKDRHATIAVPQQF
CC   SSVFEESISGNRTSTVQHTICTGDHRPLRQPPRRVPVHYQPQLDTMIKDMLDKNIIVP
CC   SSSPWASPIVLVKKKDSSLRLCIDYRRLNAITKRDSFPLPRIDAILDALSGACWFSTL
CC   DLASGYWQVEVRPQDRKKTAFVVPNGLYEFQVMPFGLTNAPATFQRLMQTVLQDTVPH
CC   KCLIYLDDIIVYGSTPEQHNANLKAVLHRLQQHNLKVKPSKCRLLQKEVVFLGHRITA
CC   DGVGTDKEKTRVIVNWPQPKSPEDVRSFLGLASYYRRFVRDFASLAAPLHRLTHKGRK
CC   FLWTTECQQAFDALKTRLSSPPILAVPDTSANGGEFILDTDASSSAIGAVLSQVAPDG
CC   QERVIAYASRRLDKSETRYSTTRREMLALVKFLQHFRHYLLGKPFRVRTDHRALQWLR
CC   SFREPEGQVARWQERLQEFDFTCEYRPGSRHTNADALSRIPQTAGTVNAVLSTAVEID
CC   WPSLQAADPDMQIIYQRQLQGNNKPSMKELKDQSLTTRRICTKWSNLKLYGDTLFLIN
CC   EARQPLLVVPRIKVESIVEQVHRKLGHAGERRTEYAVRQRFWWLSMHEDVVQICKNCN
CC   TCCRFKSPRQTSRAPLTPMVTTGPHQRVGIDIMGPLTTTKKGNRYILVMVDYFTKWCE
CC   AVPLPQQDALTVARAFIDHWVSRYGAPFSLHSDQGPAFESRLIAEICQLLGVRKTRTT
CC   AYHPEGNGLVERTNRSIKAILQAFVSRSSQELWDDVLPQCLLAYRTSVHGSTGFSPAI
CC   LLFGHELRLPVEIQTPLLPCEEQEHVPYIRTLRNRLADAYRLVSSNLRKASEHQKDLY
CC   DRRVHGPVYKVGDRVWLRRPMASSGSCSKFHQPWQGPVEIVLIRSSTTFVLRNLQRPQ
CC   DDVITVHYNQIKPDRMTVSSDAQFANPPPATTFYEVPSEGGTAYPCPRPGTEDSAYLR
CC   EGAV".
XX
SQ   Sequence 4946 BP; 1399 A; 1188 C; 1069 G; 1290 T; 0 other;
     gggcgactaa acataaactc tttggaggaa gaagaacaag ccctatgtac actaacctta        60
     caggatgact cataaggcta ctttgtaaac tgactcttcc cgctgtaccc gcccgcaccg       120
     cgctttttga ttttgaaata aagaggcttg tgattcccac tgtgttctct cgtggtgtga       180
     agtcctcgtt taacattgtg tgctgtgctg tttttcagat ctgtactgct gttctctaac       240
     tgctgattcc acgtgttacg agtggtgatg gaggtgttca ctaaaaaacg cgatgaaaac       300
     ctgaacgaac cgccggtgat tccagtcaag ccaactactg gctcagctcc ccgtcaaccg       360
     ccactcctgg aaaactcgtc agactataca gtgtggaagt tcaaagttgc agcatatctt       420
     cgtaaagttc cagcttcgga acaattcgat tatctggtgt cctacctcag tgacgaagct       480
     accaaaagag ctatagttaa cgggtttgcg gcggacaata ctctcgctca gaactggaag       540
     attctcgatg attgtttctc gacgccggtg gatccccaac aagcagccat ccgttttttg       600
     tcacgacatc aaacacccgg cgagaatcca atggattatt ttaattcttt gcaacagatg       660
     gctgtgcaag cgtttccttg tcttgatgcc actggaagag atgaattgat caagtctcgg       720
     ttcgtggaag ggttactatc cagttcctta aaggaacact tcctactaaa ccctccaaca       780
     gatataaatt ccttaaaaag agttacattc cggttcatgg cagccgagca gctaaaaagc       840
     ccacttgaca tgcaccagcc aactgcgatg gcagtaatgc agcccacaaa agcgagtcgc       900
     ccactgaacc ctcaacgcat atctaacgtt acccggtctt cccactggaa cagcagtcga       960
     agacagttca atcccactga gaagaagtgg agaccaacga atagttatca tggtcgtcaa      1020
     tccgaatgcc cgtactgtcg aaggtttggc aaaaacgcaa agaaatgtgg tcataatcgt      1080
     tttggtaaca caagtaagcc gtacattttc catttatctt cttatgctaa ccatgtgcgt      1140
     cccatcacca ttaaggctag agtacagggt atcgatatcg aagttttatt agacaccgga      1200
     gcgtcagtat ccctaattaa gagcgagttt ttaggaaggc ttaatcgtaa agtccaacag      1260
     acgcgacacc catccacatt actcacagct agcggagacc cattgaaagt gaactctaag      1320
     gtatggttgg acctaatgat agatagacat tcgttccgtc atgggttttt cgtttgtccg      1380
     actttgactt gggatatgat actcggagtc gacttcatgt tagaacataa agcttgtata      1440
     tttatggaca gcttggaagc taaatttgga gagactaaaa tacgcttgca ccatactaac      1500
     acgccattta aagctgtgtc atatgtggga atctcagacc tggtgcggca agtaaacgac      1560
     aaccgaacac taaaagagaa agatcgacat gcaacgattg ccgtgcctca acagtttagt      1620
     tcggtattcg aagagagtat ttccggcaat cgcacgagta cggtgcaaca caccatttgc      1680
     acgggggacc acagaccact taggcaaccg cctcgtagag tgccagtaca ctatcaacca      1740
     caactggata cgatgataaa ggatatgctt gacaagaata ttatagtacc gtcatcatcc      1800
     ccctgggcat cacctatcgt cctggttaaa aagaaagatt cctctctgcg tctctgcata      1860
     gactatcgac gccttaacgc tataactaag cgtgactctt ttcctcttcc gagaatcgat      1920
     gctatattag acgctttgag tggcgcatgt tggttttcaa cgctagacct agcatcaggg      1980
     tactggcaag tggaagtcag accacaagat agaaagaaaa ccgcatttgt agtgccaaat      2040
     ggtttatacg aattccaagt aatgcctttc ggtctaacga atgccccagc taccttccaa      2100
     agattaatgc aaacagtttt acaagataca gtacctcata aatgtttgat ttatctcgat      2160
     gacattattg tgtatggtag cacacctgag caacataatg ctaatctgaa agcagttctc      2220
     catcgccttc aacaacacaa cctaaaagta aaaccgtcca aatgtcgtct gctgcagaaa      2280
     gaagtagttt tcttaggaca tcgtatcact gcagatggag taggcaccga taaagaaaag      2340
     acacgtgtca ttgttaattg gccacagccc aaatcacctg aagacgttcg tagctttctt      2400
     ggcctagctt cttactacag acgctttgtc cgtgactttg catcattagc agcaccctta      2460
     caccgtttga cgcacaaagg acgaaaattt ttatggacta cagagtgtca acaggcgttc      2520
     gatgctttga agacacgact aagctctcca cctatattag ccgttccgga tacctcagca      2580
     aacgggggag aatttatact tgatacggat gccagttcct ccgctattgg agcagtccta      2640
     tcacaagtgg ccccagatgg gcaagaaaga gttattgcgt acgctagccg tcgactggat      2700
     aagagcgaaa caagatattc gacaacgcgt cgagagatgt tagcattagt aaaattctta      2760
     caacacttcc gccattattt actaggtaaa cctttccgtg tacgcacaga ccaccgtgca      2820
     ttacaatggc tccgctcctt ccgcgaacca gaaggacaag tggcacgctg gcaagaacga      2880
     ttacaagagt tcgatttcac atgcgagtac cgacctggaa gccgacatac aaacgcagac      2940
     gctctttccc gcatacctca aaccgcaggt actgttaatg cagttcttag cacagccgta      3000
     gagatcgatt ggccttccct gcaagcagca gacccagaca tgcagattat atatcaaaga      3060
     cagttacagg gaaacaataa accatccatg aaagagttaa aggatcaatc attaacaact      3120
     cgtcgtattt gcactaaatg gagcaatcta aaattatatg gtgacacgtt attcttaatt      3180
     aacgaagcga gacaacctct attggtagta ccacggataa aagttgagag cattgtggag      3240
     caggtgcacc gcaaactagg tcatgcagga gaacgaagga cggaatacgc ggtccgccag      3300
     cgcttttggt ggctatccat gcatgaagat gtagtgcaaa tttgcaaaaa ttgtaacacg      3360
     tgctgccgtt tcaaatcgcc tcgacagaca tctcgtgcac cgttaactcc catggtgacc      3420
     acaggaccac atcagcgggt gggcatagat attatgggac cattaacaac aacaaagaaa      3480
     gggaatcgct acatactggt tatggtagat tactttacta aatggtgcga agcagtaccc      3540
     cttccccagc aagacgctct tacggtcgcc cgagctttca tcgatcattg ggtttcccgt      3600
     tatggcgctc ccttctcact tcattctgat caaggtccag cctttgaaag tcgcctcatc      3660
     gccgagatat gccagctttt gggagtcagg aagacacgaa ccactgcgta tcacccagaa      3720
     ggtaacgggc ttgtagaaag aacaaacaga agtattaaag ccatattgca agcgtttgtg      3780
     agcagatcgt cgcaggagtt atgggatgat gtccttcctc agtgcctttt agcatatcgt      3840
     acatccgtac atggctccac cgggttttca cccgctattt tattatttgg acatgaatta      3900
     cgtctaccag tggaaataca gacgcccctg ctgccctgcg aagaacaaga gcatgtaccg      3960
     tacatacgta ctctccgtaa ccgcttggct gatgcatacc gcttggtcag cagcaatttg      4020
     cgcaaagcta gtgaacatca aaaggacttg tacgatcgtc gggtgcacgg accagtgtat      4080
     aaggtcggtg atcgcgtttg gctacgtcgc cccatggcat cgtcagggag ttgcagtaaa      4140
     tttcaccagc catggcaagg ccccgttgaa atcgtcctca tccgatcctc cactacgttc      4200
     gtattacgta acttgcaacg accccaggat gacgtgataa ctgtacacta taaccaaata      4260
     aaaccagata ggatgacagt ttcctcggat gcccagttcg ccaatccacc gcctgccact      4320
     acgttttatg aggtaccatc agaagggggg acagcatatc catgtccgag accaggcact      4380
     gaggacagtg cctatttaag agagggggcg gtgtaacggg gttgaaattt ctatgtatga      4440
     tatactaatg cattctattt tctttctatt gtagagcgac caaacataaa ctctttagag      4500
     gaagaagagc aagccctatg tacactaagc ttacaggatg actcataaga ctacttcgta      4560
     aactggcttt tcccgctgta atctgacgtc ccgcgctttt tgattttgaa ataaagaggc      4620
     tcgtgattcc cactccatgt tctttcttga tgtgaagtct tcgtttaaca ttgtgtgctg      4680
     tgctttttca gatctgtcct gtccttttct gaccgctagt tccacgtgtt acaaacgttg      4740
     tatccgcatt ctattcttct gctttaatgc ccacggcctt tgtttgaaga ttataatagt      4800
     attctaacat tcttttagtc ctttccatac tccattttgc tgatggtgcc gtcacatgca      4860
     gaggaacctt tattaaccaa gtgaacttat ttgtggttgt tatctccgaa agccgcttac      4920
     aagtaacatt cattacataa cactgg                                           4946
//
ID   CEREP2A     repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   07-SEP-1999 (Rel. 3.7, Created)
DT   07-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   CEREP2A dispersed repetitive element - a consensus.
XX
KW   dispersed repetitive element; CEREP2A.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-249
RA   V V., Jurka J.;
RT   "CEREP2A.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   This element does not have any noticible hallmarks of known
CC   retroelement or DNA transposons. There are about 200 copies
CC   of CEREP2A in the C.elegans genome. They are ~95% identical
CC   to the consensus sequence.
CC   CEREP2A encodes 83 aa-long protein that has distant similarity
CC   to one of the conservative domains in mariner/Tc-like
CC   transposases.
XX
SQ   Sequence 249 BP; 80 A; 80 C; 35 G; 54 T; 0 other;
     accagccgtg gaccgcacct ccggcgcggc ccccgacttc tggggctgaa aactaatttt        60
     tctgaaacta ccgtaaccct acagtattcc taccgtacca ctattgtacc actacagtac       120
     cccgactata tccctacact aaccccaact cactatccct ccagaagcca aaacttcaca       180
     gactacaaag actacataga ctacaaacta tggacacaca gaataagcgc tttatatata       240
     gtaaatgat                                                               249
//
ID   LDT1        repbase;    DNA;    INV; 5677 BP.
XX
AC   AF081103;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Lymantria dispar non-LTR retrotransposon LDT1-4 putative
DE   gag-related protein and putative endonuclease/reverse
DE   transcriptase genes, complete cds.
XX
KW   Jockey; Non-LTR Retrotransposon; Interspersed Repeat; LDT1.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-5677
RA   Garner J.K., Slavicek M.J.;
RT   "Identification of a non-LTR retrotransposon from the gypsy
RT   moth.";
RL   Insect Mol. Biol0-0 (1998)In press.
XX
RN   [2]
RP   1-5677
RA   Garner J.K., Slavicek M.J.;
RT   "LDT1.";
RL   Direct Submission to Repbase Update (31-JUL-1998)NE4509, USDA
RL   Forest Service, 359 Main Road, Delaware, OH 43015, USA.
XX
DR   GenBank; AF081103; Positions       1    5677.
XX
SQ   Sequence 5677 BP; 1508 A; 1744 C; 1226 G; 1199 T; 0 other;
     agactgaatg ctagtatata tacaccgcct tttgctgtct attcaatcat tccgcgtcgg        60
     agactcgtag cgcacggacg tgcgcctcgc tgctctccat ttcgccgcgc tcaccccgca       120
     cccgccccct gcggtcgtgc gttctcgctc cgtctcgctc gctctcgcag cgaaccacgc       180
     gtcgcgtcaa gccgccatct tgttcaacgt ctgtggccgt tcagtggccc gctccgggtg       240
     gccgtgtata cggttgtctg tggcagtttc gctgtttgga cgcaggtgtt gccggatccc       300
     aactgcacga gtcgactttt tcaagacgtc gagtgcagat ttctaccgtt ggtagataaa       360
     aagtcaacct attttggccc cctcagggta gaaaaccata ttgtttggtc cccggcggaa       420
     acctcacggt gtcaacgaag ccgggtgagg caaggccccg atttgcctgc cgagcccctc       480
     cagggcagag ctaacaatcg gaaggggtta gagcatccgg ccttggggga tctcctagtc       540
     ggacctaatc tacggctttt caacattttt ctgcgaaggc ctaacggccc gagcagctag       600
     gaacctatcg cacattaaga ttggcgaagg attacaagct tagggcacac taattaagta       660
     ctcatcctcc cgacctgcac ccggttggga gggacacgca ccacacacaa cccagggtat       720
     cccacccagg gcgctaggtt ttttacatcc ctcttagcta tcgttttttt ccgttagccc       780
     acgatggcgg aaaaaaccat cactatagac gcccttctgg caattccaga aatcaaagct       840
     tatatcgctc aacatttcgg agcgataacg atccttcctc cgcaacccaa acccgctcga       900
     tccaccgccc agccgctcga accggaacta ccggccgtcg gtacggcgat ggaaacggag       960
     ccggtcttgt cctcctcaaa ctcgtcttcc tcctcctcct ccgagtcgga agattcgtcc      1020
     aatgagggct cattcattga ggtccgctct cgcaaacgga gcaaaaggac caaaaacacc      1080
     aaagaggccc cctctaagac cccaaaaatc aagcagactg actcggcaac aacatctgcc      1140
     gcagccccgc ttgcaacgac cgccacggcc gctccggccc ccccagtcgt ctcacaggca      1200
     gccctaaccg ctgccccacc acctacggac agcaataccg tcgccccacc gacggtcaaa      1260
     aaatcactcg ctccgccgcc cctatatatt agggacaagg acaagtggct agccatctcc      1320
     gcatggctaa acactaacag gatttcgtat aaatctgcga aatccacccc ccaaggtata      1380
     cgagtggacc ttcactcgtc agccgaccac cgatctgtat caaaaatgct agggaatcaa      1440
     cagattccct accatacgta caccctccct gaagccaaac ttctgcgtgc tgtaatacgc      1500
     aacgtaccga gggaaataga gaccaaagag attctagaat ctcttaaaac ccaggatcta      1560
     ccggttgtag aagtacaccg gatgatccgg ggtaggggtc gttatcccct caacatgata      1620
     ctcgtctgcc ttacaaataa cgcagagggt aaaggcattt ttaaaattaa gaccatctgc      1680
     ggtctatctg gggtctcggt tgagccccca cacaaaaatg gcaacctggc acaatgccac      1740
     aagtgccaac tgtatggaca atcgtccaaa aactgctttg cccgtcctag gtgcgttaag      1800
     tgcctaggtg accatcacac ctctcagtgt gaacggccaa aggacatctc actctgcaaa      1860
     gagccaccag cgtgtgttct ctgtggagaa tacggacacc cggctaacta ccgcggctgc      1920
     ccaagagcgc cgaggaggtt agtccgccag cccaacacaa acggcaaggc cttgtactat      1980
     aacaagacct tcgtcccagc ccccttacca acccacaatg cgtgggctcg ccccctgcta      2040
     aacagcaagg aggctttccc aaccctgccc aacaggcagc ccgctgcccc acccgcaaca      2100
     tctcaactca aaccaccaac aaccgggcca aaccagccca ctggtggtaa tcccaagccc      2160
     cctcagggcg cccctattcc tatcgtcgtc gctaaaagcg cgcccccaaa agccccccaa      2220
     ggactagatc cagatctagc cctggtggcc aacttcgcag ctcaaatcaa tttcacggaa      2280
     atccgcgaaa ttgcagccga attaagaagg aacgagggaa acaacctcgc cctccttaat      2340
     accgcaatta aattttcccc cacgttagag cgtctaggct cgcttaaatt caaataaaat      2400
     ggataggtac actccaggca gagttaaacc cagacacctc aaaataggga cattcaatgc      2460
     caatagccta acccaacaga aggatgaagt aggcacattc cttcgggaac accagctcga      2520
     catcttgcta gtacaagaga cgttccttaa accatttaac aaggacccta gagtcgccaa      2580
     ctataatata gttcgcaacg ataggacaac ctcaccaatg ggcggaacgc ttatctacta      2640
     caaaaggtcg ctgcattgca cacctgtgga tccgccccct ctgatgtaca ttgaagcttc      2700
     aatttgcagg ctagccctct caggccatca gcctatcacc cttgtatccg catatctctc      2760
     tcccaataga gaacattcga aacagttggt tgaaaaagat ctaaaagcct tgctagaatt      2820
     gggaggcgcc gtcatcattg gcggtgacct taacgccaag aacacctctt ggagctgtca      2880
     aagttccaat aagaggggca agactttaga gctattcgct gacagactgg gatttgatgt      2940
     catagcgccc atagagccga cacacttccc ctttaacgtt tcgcacaggc cggacatact      3000
     cgatatcttt cttctcaaaa acataaacct tcgtttatgt tcaatagaag ttcaacacga      3060
     gttagactca gatcaccgcc cggtgactct ggaattagcc tcccgcaccc ccggcccctc      3120
     aggccacaat aacgaaagga ccaagatagc gactgactgg gcacggctag agaaaaatct      3180
     caagtcaacc tcgtcggtcc accttgatca aattcccaaa gacattacgt ctaaggaaga      3240
     gacctctcag gcgatcgact cgctcacaag tcacgtgcag tcgataatgg acgactgctc      3300
     gcggccggta ccagatacga gcgatcgtaa atggcgcctg ccagacgacg tccgtgactt      3360
     gttgagacgg aaaaacgccg cgacacgcgc ttatgaccgc taccctacgg aggacaaccg      3420
     tacccgccta cggtcactcc agagggaggt taaacaagca attaaaaaat tgagacagag      3480
     caaatgggac gccatgatcg aggagctaga accctctcac acagcctttt ggcagctttc      3540
     ccgctcactc aaaaaagaca tcgtgtccac tctccctcct ctcaccagac ccaaccagcc      3600
     tccggcattc atggacgatg aaaagtcaga atgcctggcc gactgcttag agcttcagtg      3660
     tacgccgagt acactacacc ccgacgccgc gaatcaccgc ttcatcgccg acgaagtgga      3720
     acgtcgtaac actctctcgc gctcgttagg aaacgacagc cccgatcagc caatcccagc      3780
     agtgaccacc gatgaggtcg aatcgttagt caggggtctc aaaaccagga aagccccagg      3840
     ttcggacgga atctcaaata aagtcattaa actattcccc gcccacttga taatcctgtt      3900
     gtgctgcatc ttcaatgcag cactaaataa taacatcttt cccgcgcaat ggaaagaggc      3960
     cgtggtaata ggaatccaca aacccggcaa gcgccgtacc gaacctagta gttaccgccc      4020
     gattagtcta ctaagaggtc taggtaagat ctacgaacga atagttctca gtagactacg      4080
     tacattcgcc gaggctaaca acctcgttcc cgacgcacag tttggcttcc gagctaaaca      4140
     cagctgcgta caacaagttc accgtttggt agaatacaca agtagtcagt tcatcatgaa      4200
     cagatatacg ggtgtattat tcctagacgt agcgaaagca ttcgacaagg tttggcatga      4260
     aggcctaatc tacaaactct atctcctcaa gatccctcac tacttaattc acattataca      4320
     tgactactta agtcatcgca gctttcgcta cagggtggaa gggacgttgt cgacctccca      4380
     ccctatcaag gccggcgtcc ctcaggggtc ggtcctctcc ccatttctct tcacgctata      4440
     cactagcgat atgcccaaat tcaaccgggt acataaagcg ctttacgctg atgacaccgc      4500
     actcttttgt gctggtagat ccccgacaac agtagccagg actctccaaa cagcggttac      4560
     cgccctagcc aattggttta ggaattggag attagaaatc aaccccgaga agagtcaggc      4620
     ggtcatgttc actagacgaa ctgcccgttc ctactctatc gatagcattc ccccccttaa      4680
     aattttcaac aagccggtca cttggaccag gcaggccaaa tacttgggtg tgacccttga      4740
     cgatcgactc agcttcgccc ctcacataaa gaaagtccgc gcacgggcag cctttgtgat      4800
     gggccgtctc cactgtctac tcaactctag gtcgcgtatg cccctgagta gcaaagtccg      4860
     actttacacc acctgcatac ggcctatcat gacctatgcc agcgtggtgt tcgcgcatgt      4920
     taagccacac aggatccaca ggctacagac actacaaaat cgtttcatgc gccgagctac      4980
     gggagcaccg tggttcatac gaaacgtcga tctccacatc gacctcgaac tgccgaccat      5040
     caagcagttt atgaaacggt gctctcagag ctactttgac tctgccatga cacaccccaa      5100
     ccaactagtg gttggggcgg cttcctatag accctccaaa atctcctcca tccgacgtcc      5160
     tcgtcacgtc ctcgacgaag aggacgacat tatcacactc gctcaacaaa gagcctacac      5220
     ggcccgcgag gccttaacaa ataaatatcc gcggttccgc cctcgccgtc gaggtgcgaa      5280
     accgcgccgc gcaaaagtca ctaccaaaaa cgtgggcacg tccactttgc ctccagcgac      5340
     gccccaagcc gaggtccgtt ccccacaggg ggagcccttg ggcgatgtcg cttagcatac      5400
     ttttctccgg gttgagagcc ctcagcgctc acccatagtc cgcgtcaagc tgtcaaggcc      5460
     atctgcggcc agcagctgta cacacaaaaa aaaaaaaaaa aaagtctatt cattcagtcg      5520
     acatacgata tcagctcgca cactcgtacg gtcgtcacta gttctattat caatttattg      5580
     tacataattt atgaaatgta aataaatcgt cagtcttaga aataactctc tacgttcttc      5640
     ttcgccttct tctcacatct tcattcgcca accacaa                               5677
//
ID   LTRP1       repbase;    DNA;    INV; 215 BP.
XX
AC   L42495;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Leishmania tropica DNA repeat.
XX
KW   LTRP1; Repetitive element.
XX
OS   Leishmania tropica
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-215
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42495; Positions       1     215.
XX
SQ   Sequence 215 BP; 51 A; 68 C; 65 G; 31 T; 0 other;
     gcaagaatca agaggcagtg tcacagagat gcgcgaaggg gggcggtggg agcgggagag        60
     agaccgcggg cacgtggcga cgtccgtgga accaaaaaaa agcagaagac gagtattccc       120
     ttttgctgat gtgtgaccac ctctctgcca cagatcacga gctcagctcc cctccaccct       180
     aacgcctccc ccgcgcggcc ctgtcacagg ctccc                                  215
//
ID   Perere_INT  repbase;    DNA;    INV; 4875 BP.
XX
AC   BK004067;
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Schistosoma mansoni Perere non-LTR retrotransposon mRNA, complete
DE   sequence.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; LTR retrotransposon;
KW   Perere; Perere_INT; Schistosoma mansoni.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Perere_INT.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004067; Positions       1    4875.
XX
CC   Key Location/Qualifiers
CC   CDS 822..4505
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04497.1"
CC   /db_xref="GI:44829167"
CC   /translation="MNENNIVEVTTNVIAPEAEPTGTANLSHVSQCTDIPMQCASLPL
CC   ILIVALDNQDISDVDSNVILSSVISEAKDRTPDSIVKAHKNTAKPKKNIPIKKKVNKK
CC   PSGSRPNTKNISTALPNKSLISETMLNPTHRKGGYKDTFRSNVTRDGHYNHHVSRPTI
CC   RQTGMNQRAAWFPPNVINNKPARCNSYHHSCSGEDGILGYAPSTQPQHTGTCLNCPPK
CC   QVQPYQNKDFFRPPEIPCSTSTTIRSCYSPCDPENTLNHSPGIARTHTLDKDALGFFT
CC   LHTPFLNLLLINARSLLNKISALRTLAFLAKPSFILITETWCYPAVADSELNIQNYRL
CC   YRCDRETKRGGGCLIFALDTLTTNKVEDSILNSLPESIWISINTLNHSLLLGCIYRAP
CC   DSTDNLNDRIINAFIHASTLNFSARIITGDFNYPEINWSTGSCQSSNDEFLSILNLYC
CC   WSQWVRTPTRGDNTLDLIFGRDTIPLSVQVYNEFESSDHRMVACALPIYPSYNRPIQR
CC   TCNYRDYKHADWDLLRSLIKLSDWDEFFSCNSLTDAINIFYLIVNSCLDSCAPIKIYR
CC   ISKHHELYIPAKYRNKLRRLKKRYFKSNDFTAVTQITIIFNQIKEKHRLKAINEELLA
CC   LRTSSKVQNLIHIYNKRAKSTQNVDIPCILHNNSFIYDPKTIADLFSGNFANSKESLN
CC   DFVSRVICLTGNSIKSISFTCLKISKVTNKLKVSKGHGADGISSFLYKYGGPDIQLLL
CC   LKLFTLSMESGSYPDRWKTAYIIPRYKSGDKTDMNNYRPINITPVISRIMEKIISDEL
CC   PNYLLTEQFIDDSQHGFLKNRSCMTCHFDFFNLVYSLRSQGYLVLVLYLDISKAFDMV
CC   NHQLLIGKLASYGVENPLLAWFDSFLSDRHQIVKINSSLSNSVPVRSGVIQGCVLGPL
CC   LFLVFINDICECFSVGKSLLFADDLKVVYSFSPHELSNIRNCISTELNKVAQWCSEWQ
CC   LELNTAKCGCLCFGDTSLNLNLTINGEMLSRLHTVVDLGLRYSDDLSFTEQIMKQTSK
CC   SQRLIGFITRNLHNSESRILMYKVCVRPLLEYCAFLLISTRIKDKLRLESVQRRFIFR
CC   TLGTDSVLTYNSRCSKLGLDPLWMRRLKLNLIFFFKILNKLSFTSSQEIQYAKAPHYD
CC   IRNSLSLAKQTYSRSSLYMNYFTCEFSMLWNNLPQTIRMLNSLPLFVRSINAFCSSEN
CC   ALNALAHASVSYSTSEIIGTLNV".
XX
SQ   Sequence 4875 BP; 1539 A; 1024 C; 814 G; 1498 T; 0 other;
     gcggtacgtt tggagtttgc gttacgatca cacggtattt attacaaagt ccttatatat        60
     cgttaaacca cagtttaaaa atcaataata acattcagtt aacccttgaa gaaaagtggt       120
     ttgactgaca caaaaacgag cttgaaaaag tcctatttct tcagatatta acaactctgg       180
     tcttacctat accccatgct ctgcaactcc tgttgcacca gataatagtg ggagtggact       240
     tattccacac atgttgctgg atgactgcat gtctaactta ataatgagtt ctaactcacg       300
     aacagatggt atcgatctta ttaagagcga attagcctct gtctttaagc aattaagtgg       360
     agtcacttgc gggctcttta ttaaagcatg atgatcttaa atttgaacta aagacactgt       420
     caccccttcg actactgttg tccaaggata tagttacttc tgaattcgaa gacaggatca       480
     aagtagaatc cgttattgac ttgatagcta gtgaagtcac caagcgaata atctctcgaa       540
     ataatgtggt tatatataat atacctgaca aagttgccat taaaactgta agaaactcga       600
     tactaaaggc agttaatctc caggacaatc catgccaatg tatccgactt aacaaaaagc       660
     atcaaaaata ctcgtgccct atcgtgttta gatttgattc ccatttatta gcggaacgtt       720
     tgaaagaatc tgaacagcta gtctgtgcgc atacgaagtt taaaaacgct cgtatagtct       780
     cagacaaaac caccaatcaa agactaacac aaaagcgtac catgaacgaa aataacattg       840
     ttgaggtcac aacaaatgtg atcgcgccag aagctgagcc cactggtaca gctaatctat       900
     ctcatgttag tcagtgtact gatataccaa tgcagtgtgc tagtttgcct ctcatactca       960
     tagtggccct agataaccag gacatatctg atgtagactc taatgtcatt ctttccagtg      1020
     taatatcgga agccaaggat cgaacacctg attctattgt gaaggctcat aaaaacactg      1080
     ctaaacctaa aaagaatata ccaattaaga agaaagtaaa taaaaaacct tctggttcta      1140
     gaccgaatac caaaaatatt tcaacggcct taccaaacaa aagtttaatt tctgaaacca      1200
     tgcttaaccc tacccaccgt aagggaggtt ataaggacac atttcgttca aacgttacac      1260
     gagacggcca ctacaatcat catgtaagca ggcctactat tagacagacg ggaatgaacc      1320
     aacgtgccgc atggtttccc ccaaatgtta taaataataa acctgcaaga tgtaactctt      1380
     atcatcactc ttgcagtggg gaagatggta tactaggtta tgcaccatca acgcaacccc      1440
     aacatacagg cacctgtctt aattgtccac caaaacaagt acaaccttac caaaataagg      1500
     atttttttcg gcctccagag atcccttgtt ccactagcac tacaattcgc tcatgctata      1560
     gcccatgcga tccggaaaac acattaaacc atagtccagg catagctaga actcataccc      1620
     tcgataaaga tgctctcggt ttttttacac tacacactcc ttttttaaac ttattactca      1680
     ttaacgcacg ttcacttctg aacaaaatct cagccttgag aaccttagcc tttctagcca      1740
     agccttcttt tatacttatc actgaaacgt ggtgttatcc agcagtggcc gattccgaat      1800
     taaatatcca aaactatcga ctctatcgtt gtgacagaga aactaagcga ggaggcggtt      1860
     gtcttatatt tgctttggat accttaacaa ctaataaagt tgaagatagt atcttgaata      1920
     gtttaccaga atcgatctgg atatcaatca ataccctaaa ccatagtcta ctcctaggtt      1980
     gtatatatag agctcctgat agtactgata atttgaatga tcgtattatc aatgcattta      2040
     tacacgcatc tactctaaac ttcagcgcta ggattatcac tggtgatttc aattatcctg      2100
     agattaactg gagtaccggt agctgtcagt ctagcaatga tgaattttta tcaatcctta      2160
     atctgtactg ctggtcacag tgggttcgta ccccaacaag gggtgataat acacttgatc      2220
     taatatttgg tagagatacc attcccctat ctgtacaagt atacaacgag tttgaaagca      2280
     gtgatcatag gatggtagct tgtgctctcc ccatctatcc ctcctacaac cgaccaattc      2340
     aaagaacctg caattataga gactataagc atgcagactg ggacctcttg cgctcactga      2400
     tcaaactctc agactgggat gaattcttct catgtaatag tctgacagat gccatcaaca      2460
     tattctattt gattgttaac tcttgtctag actcctgtgc accaattaag atttacagga      2520
     ttagtaaaca tcacgaatta tatataccag ctaaatatcg taataaacta agacgcctaa      2580
     agaaacgtta ttttaaatct aacgacttca cggcagtcac acaaataaca ataattttta      2640
     accaaattaa agagaaacat aggttaaaag ccatcaatga agagctatta gcactacgta      2700
     ctagctcaaa agtgcaaaac ctaatccaca tttacaataa acgtgctaaa tcaactcaaa      2760
     atgttgatat accatgcatc ctgcataata atagttttat atatgaccca aaaactatag      2820
     cagacctttt cagtggtaat tttgcaaata gcaaagaatc cttaaatgac tttgtttcta      2880
     gagttatatg cttgactggt aactcaatta aatctatctc cttcacatgt ctgaaaatta      2940
     gtaaggttac aaataagctc aaggtttcga aaggtcacgg tgcagacggg atttcatcat      3000
     ttctctacaa atatggtggt ccagatatcc aacttcttct ccttaagctg tttactctct      3060
     ctatggaatc gggctcttat cctgaccgtt ggaaaaccgc gtacatcata ccacgttaca      3120
     aatccggaga taagactgac atgaacaact atcggccaat aaatattact ccagttatct      3180
     ctaggattat ggaaaaaatt attagtgacg aactacccaa ctatttattg actgaacaat      3240
     ttattgatga ttcgcaacat ggatttctta aaaatcgatc ctgtatgaca tgtcattttg      3300
     acttctttaa tttagtctat tcgcttcgta gccaaggata tctagtatta gtgctatacc      3360
     tggacatttc taaggccttc gacatggtca accaccaact tctcataggt aaactcgcat      3420
     cttatggggt cgaaaacccg ttactagcct ggtttgattc cttcctcagc gatcgacatc      3480
     aaatagttaa aatcaactct tcattgtcga actcagtccc tgttagaagt ggggtaattc      3540
     agggttgtgt cttaggtcct ttgctctttt tagttttcat taatgatatt tgtgagtgtt      3600
     ttagtgtggg taagtccctt ttgtttgcag acgatcttaa ggtggtgtac tcattttctc      3660
     cacatgagct gagcaatatt cgaaattgta tcagcacgga gcttaacaag gtagcacagt      3720
     ggtgctcgga atggcaactg gagctcaata cagctaaatg tggttgttta tgcttcggtg      3780
     atacatcact caacctcaat cttaccataa atggggaaat gttatctagg ttacacacag      3840
     tagtagatct aggacttagg tactccgacg acttgtcgtt tactgaacag ataatgaaac      3900
     aaacgtccaa gtctcaacgc cttataggtt tcataactcg aaaccttcat aacagcgaat      3960
     ctcgtattct aatgtacaaa gtctgtgttc gaccactcct cgaatactgc gcgtttctcc      4020
     ttattagcac gcgcataaag gataaattaa gactggaatc agtacagaga cgatttatat      4080
     ttcgtactct tggaactgat agtgtcttga catataattc gaggtgtagt aaactagggc      4140
     ttgacccttt atggatgagg agactcaaac ttaaccttat cttctttttc aaaatactta      4200
     acaaactctc cttcacatcc agtcaggaga ttcaatatgc taaagcccca cattacgaca      4260
     ttcgtaactc cttgtcttta gcgaaacaaa catattctag atcttctctc tacatgaatt      4320
     actttacctg tgagttttct atgctctgga ataatttacc ccaaactatc cgtatgttaa      4380
     actctctccc attgtttgtt cgctcaatta atgctttttg ctcctctgaa aatgcattaa      4440
     atgctctagc gcatgcaagt gtatcttact ccacaagtga gattatagga actttaaatg      4500
     tttaacctct tacttgctat cattgttttg ttgttccgtg ctctttgctt taatcttact      4560
     ttctctagtt gtagataatt aataataact tgctctggca ctggaaataa ccttacagaa      4620
     caatgttgat caatcatcag gctatccact taataaaaaa tgacaagttc cctggtgttg      4680
     cattggcttg ccgtgacata tgccatattt aagctaatta tcaattacta aaccagcaaa      4740
     cataaaactt tcttatattt catgtttgtt ctctacatta aatgttgatt tttataacaa      4800
     tctgatcatg cctgtaaact ggtgtgaatt ctgtaaatat tattttcaga atatattatt      4860
     attattatta tttag                                                       4875
//
ID   Saci-2_I    repbase;    DNA;    INV; 4216 BP.
XX
AC   BK004069;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   02-SEP-2005 (Rel. 9.06, Last updated, Version 3)
XX
DE   Schistosoma mansoni Saci-2 LTR retrotransposon: internal
DE   sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Saci-2_INT; Saci-2_I.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004069; Positions     260    4475.
XX
CC   Key Location/Qualifiers
CC   CDS 9..4157
CC   /codon_start=9
CC   /product="pol polyprotein"
CC   /protein_id="DAA04499.1"
CC   /db_xref="GI:44829171"
CC   /translation="MEVFTKKRDENLNEPPVIPVKPTTGSAPRQPPLLENSSDYTVWK
CC   FKVAAYLRKVPASEQFDYLVSYLSDEATKRAIVNGFAADNTLAQNWKILDDCFSTPVD
CC   PQQAAIRFLSRHQTPGENPMDYFNSLQQMAVQAFPCLDATGRDELIKSRFVEGLLSSS
CC   LKEHFLLNPPTDINSLKRVTFRFMAAEQLKSPLDMHQPTAMAVMQPTKASRPLNPQRI
CC   SNVTRSSHWNSSRRQFNPTEKKWRPTNSYHGRQSECPYCRRFGKNAKKCGHNRFGNTS
CC   KPYIFHLSSYANHVRPITIKARVQGIDIEVLLDTGASVSLIKSEFLGRLNRKVQQTRH
CC   PSTLLTASGDPLKVNSKVWLDLMIDRHSFRHGFFVCPTLTWDMILGVDFMLEHKACIF
CC   MDSLEAKFGETKIRLHHTNTPFKAVSYVGISDLVRQVNDNRTLKEKDRHATIAVPQQF
CC   SSVFEESISGNRTSTVQHTICTGDHRPLRQPPRRVPVHYQPQLDTMIKDMLDKNIIVP
CC   SSSPWASPIVLVKKKDSSLRLCIDYRRLNAITKRDSFPLPRIDAILDALSGACWFSTL
CC   DLASGYWQVEVRPQDRKKTAFVVPNGLYEFQVMPFGLTNAPATFQRLMQTVLQDTVPH
CC   KCLIYLDDIIVYGSTPEQHNANLKAVLHRLQQHNLKVKPSKCRLLQKEVVFLGHRITA
CC   DGVGTDKEKTRVIVNWPQPKSPEDVRSFLGLASYYRRFVRDFASLAAPLHRLTHKGRK
CC   FLWTTECQQAFDALKTRLSSPPILAVPDTSANGGEFILDTDASSSAIGAVLSQVAPDG
CC   QERVIAYASRRLDKSETRYSTTRREMLALVKFLQHFRHYLLGKPFRVRTDHRALQWLR
CC   SFREPEGQVARWQERLQEFDFTCEYRPGSRHTNADALSRIPQTAGTVNAVLSTAVEID
CC   WPSLQAADPDMQIIYQRQLQGNNKPSMKELKDQSLTTRRICTKWSNLKLYGDTLFLIN
CC   EARQPLLVVPRIKVESIVEQVHRKLGHAGERRTEYAVRQRFWWLSMHEDVVQICKNCN
CC   TCCRFKSPRQTSRAPLTPMVTTGPHQRVGIDIMGPLTTTKKGNRYILVMVDYFTKWCE
CC   AVPLPQQDALTVARAFIDHWVSRYGAPFSLHSDQGPAFESRLIAEICQLLGVRKTRTT
CC   AYHPEGNGLVERTNRSIKAILQAFVSRSSQELWDDVLPQCLLAYRTSVHGSTGFSPAI
CC   LLFGHELRLPVEIQTPLLPCEEQEHVPYIRTLRNRLADAYRLVSSNLRKASEHQKDLY
CC   DRRVHGPVYKVGDRVWLRRPMASSGSCSKFHQPWQGPVEIVLIRSSTTFVLRNLQRPQ
CC   DDVITVHYNQIKPDRMTVSSDAQFANPPPATTFYEVPSEGGTAYPCPRPGTEDSAYLR
CC   EGAV".
XX
SQ   Sequence 4216 BP; 1225 A; 1018 C; 930 G; 1043 T; 0 other;
     gagtggtgat ggaggtgttc actaaaaaac gcgatgaaaa cctgaacgaa ccgccggtga        60
     ttccagtcaa gccaactact ggctcagctc cccgtcaacc gccactcctg gaaaactcgt       120
     cagactatac agtgtggaag ttcaaagttg cagcatatct tcgtaaagtt ccagcttcgg       180
     aacaattcga ttatctggtg tcctacctca gtgacgaagc taccaaaaga gctatagtta       240
     acgggtttgc ggcggacaat actctcgctc agaactggaa gattctcgat gattgtttct       300
     cgacgccggt ggatccccaa caagcagcca tccgtttttt gtcacgacat caaacacccg       360
     gcgagaatcc aatggattat tttaattctt tgcaacagat ggctgtgcaa gcgtttcctt       420
     gtcttgatgc cactggaaga gatgaattga tcaagtctcg gttcgtggaa gggttactat       480
     ccagttcctt aaaggaacac ttcctactaa accctccaac agatataaat tccttaaaaa       540
     gagttacatt ccggttcatg gcagccgagc agctaaaaag cccacttgac atgcaccagc       600
     caactgcgat ggcagtaatg cagcccacaa aagcgagtcg cccactgaac cctcaacgca       660
     tatctaacgt tacccggtct tcccactgga acagcagtcg aagacagttc aatcccactg       720
     agaagaagtg gagaccaacg aatagttatc atggtcgtca atccgaatgc ccgtactgtc       780
     gaaggtttgg caaaaacgca aagaaatgtg gtcataatcg ttttggtaac acaagtaagc       840
     cgtacatttt ccatttatct tcttatgcta accatgtgcg tcccatcacc attaaggcta       900
     gagtacaggg tatcgatatc gaagttttat tagacaccgg agcgtcagta tccctaatta       960
     agagcgagtt tttaggaagg cttaatcgta aagtccaaca gacgcgacac ccatccacat      1020
     tactcacagc tagcggagac ccattgaaag tgaactctaa ggtatggttg gacctaatga      1080
     tagatagaca ttcgttccgt catgggtttt tcgtttgtcc gactttgact tgggatatga      1140
     tactcggagt cgacttcatg ttagaacata aagcttgtat atttatggac agcttggaag      1200
     ctaaatttgg agagactaaa atacgcttgc accatactaa cacgccattt aaagctgtgt      1260
     catatgtggg aatctcagac ctggtgcggc aagtaaacga caaccgaaca ctaaaagaga      1320
     aagatcgaca tgcaacgatt gccgtgcctc aacagtttag ttcggtattc gaagagagta      1380
     tttccggcaa tcgcacgagt acggtgcaac acaccatttg cacgggggac cacagaccac      1440
     ttaggcaacc gcctcgtaga gtgccagtac actatcaacc acaactggat acgatgataa      1500
     aggatatgct tgacaagaat attatagtac cgtcatcatc cccctgggca tcacctatcg      1560
     tcctggttaa aaagaaagat tcctctctgc gtctctgcat agactatcga cgccttaacg      1620
     ctataactaa gcgtgactct tttcctcttc cgagaatcga tgctatatta gacgctttga      1680
     gtggcgcatg ttggttttca acgctagacc tagcatcagg gtactggcaa gtggaagtca      1740
     gaccacaaga tagaaagaaa accgcatttg tagtgccaaa tggtttatac gaattccaag      1800
     taatgccttt cggtctaacg aatgccccag ctaccttcca aagattaatg caaacagttt      1860
     tacaagatac agtacctcat aaatgtttga tttatctcga tgacattatt gtgtatggta      1920
     gcacacctga gcaacataat gctaatctga aagcagttct ccatcgcctt caacaacaca      1980
     acctaaaagt aaaaccgtcc aaatgtcgtc tgctgcagaa agaagtagtt ttcttaggac      2040
     atcgtatcac tgcagatgga gtaggcaccg ataaagaaaa gacacgtgtc attgttaatt      2100
     ggccacagcc caaatcacct gaagacgttc gtagctttct tggcctagct tcttactaca      2160
     gacgctttgt ccgtgacttt gcatcattag cagcaccctt acaccgtttg acgcacaaag      2220
     gacgaaaatt tttatggact acagagtgtc aacaggcgtt cgatgctttg aagacacgac      2280
     taagctctcc acctatatta gccgttccgg atacctcagc aaacggggga gaatttatac      2340
     ttgatacgga tgccagttcc tccgctattg gagcagtcct atcacaagtg gccccagatg      2400
     ggcaagaaag agttattgcg tacgctagcc gtcgactgga taagagcgaa acaagatatt      2460
     cgacaacgcg tcgagagatg ttagcattag taaaattctt acaacacttc cgccattatt      2520
     tactaggtaa acctttccgt gtacgcacag accaccgtgc attacaatgg ctccgctcct      2580
     tccgcgaacc agaaggacaa gtggcacgct ggcaagaacg attacaagag ttcgatttca      2640
     catgcgagta ccgacctgga agccgacata caaacgcaga cgctctttcc cgcatacctc      2700
     aaaccgcagg tactgttaat gcagttctta gcacagccgt agagatcgat tggccttccc      2760
     tgcaagcagc agacccagac atgcagatta tatatcaaag acagttacag ggaaacaata      2820
     aaccatccat gaaagagtta aaggatcaat cattaacaac tcgtcgtatt tgcactaaat      2880
     ggagcaatct aaaattatat ggtgacacgt tattcttaat taacgaagcg agacaacctc      2940
     tattggtagt accacggata aaagttgaga gcattgtgga gcaggtgcac cgcaaactag      3000
     gtcatgcagg agaacgaagg acggaatacg cggtccgcca gcgcttttgg tggctatcca      3060
     tgcatgaaga tgtagtgcaa atttgcaaaa attgtaacac gtgctgccgt ttcaaatcgc      3120
     ctcgacagac atctcgtgca ccgttaactc ccatggtgac cacaggacca catcagcggg      3180
     tgggcataga tattatggga ccattaacaa caacaaagaa agggaatcgc tacatactgg      3240
     ttatggtaga ttactttact aaatggtgcg aagcagtacc ccttccccag caagacgctc      3300
     ttacggtcgc ccgagctttc atcgatcatt gggtttcccg ttatggcgct cccttctcac      3360
     ttcattctga tcaaggtcca gcctttgaaa gtcgcctcat cgccgagata tgccagcttt      3420
     tgggagtcag gaagacacga accactgcgt atcacccaga aggtaacggg cttgtagaaa      3480
     gaacaaacag aagtattaaa gccatattgc aagcgtttgt gagcagatcg tcgcaggagt      3540
     tatgggatga tgtccttcct cagtgccttt tagcatatcg tacatccgta catggctcca      3600
     ccgggttttc acccgctatt ttattatttg gacatgaatt acgtctacca gtggaaatac      3660
     agacgcccct gctgccctgc gaagaacaag agcatgtacc gtacatacgt actctccgta      3720
     accgcttggc tgatgcatac cgcttggtca gcagcaattt gcgcaaagct agtgaacatc      3780
     aaaaggactt gtacgatcgt cgggtgcacg gaccagtgta taaggtcggt gatcgcgttt      3840
     ggctacgtcg ccccatggca tcgtcaggga gttgcagtaa atttcaccag ccatggcaag      3900
     gccccgttga aatcgtcctc atccgatcct ccactacgtt cgtattacgt aacttgcaac      3960
     gaccccagga tgacgtgata actgtacact ataaccaaat aaaaccagat aggatgacag      4020
     tttcctcgga tgcccagttc gccaatccac cgcctgccac tacgttttat gaggtaccat      4080
     cagaaggggg gacagcatat ccatgtccga gaccaggcac tgaggacagt gcctatttaa      4140
     gagagggggc ggtgtaacgg ggttgaaatt tctatgtatg atatactaat gcattctatt      4200
     ttctttctat tgtaga                                                      4216
//
ID   TRANSIB4    repbase;    DNA;    INV; 2651 BP.
XX
AC   .
XX
DT   24-APR-2001 (Rel. 4.4, Created)
DT   24-APR-2001 (Rel. 4.4, Last updated, Version 1)
XX
DE   TRANSIB4 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; TRANSIB family; DDE-class; TRANSIB4p transposase;
KW   TRANSIB4.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2651
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB4.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB4 belongs to the TRANSIB family of DNA transposons.
CC   It has generated 5-bp duplications of the CantG target
CC   sites upon its integration into the genome (it has happened
CC   a few million years ago).
CC   TRANSIB4 has 40-bp terminal inverted repeats.
CC   There are ~10 copies of TRANSIB4 which are ~93% identical to the
CC   consensus sequence.
CC   TRANSIB4 encodes the TRANSIB4p transposase (positions 545-2147).
CC   The transposase is not perfectly recovered since it contains a
CC   few false stop-codons and frame-shifts.
CC   TRANSIB4p is 37-44% identical with TRANSIB1p-TRANSIB3p.
CC   There is 60-62% nucleotide identity between TRANSIB4 and
CC   TRANSIB1-TRANSIB3.
XX
SQ   Sequence 2651 BP; 932 A; 454 C; 451 G; 814 T; 0 other;
     cactatgggt aaaaagccgg aaattttggt attaatgtaa ttttttttgt gattgatatt        60
     ttaatgctgc tttcattttt tgattcctaa gtaacaagat agcataaaaa taattttaaa       120
     acatttttac gagttatcgt ttatttttgg cgcgctttca aagtcagctg attcagaggt       180
     gctttgaatt gtgaaaattg gcggaaaaag ttgaacaaat tgcagcgcaa acattgtctt       240
     catagcaaac tttgagttta tttttaatta tggaaaaaac aagtcagagt atgtaaatta       300
     ttcgtgaata cacgttttcc gataattgtg tgtggttgtt gttgaattgt ccaatgtatt       360
     gcttgtgagt attttcaatt gtttactaac aaacgttcta gtgttctgtg gaatattact       420
     tttgtatggc acaacgaatc accaaagtta aagttgtatg tttttaacaa atatatgtgg       480
     aatcaaatgg tattaatgtt ttttgcccct ttttgccctt ttttgcgaaa cattttatgt       540
     tgtaggtgtg tataagttta gtcatgcagt tctgctggat gtttggagca acaacaaacg       600
     cgatgcagac gctgttaaca gttatatttt ggaaaatata gaagagaact ttgagactaa       660
     agagcaaaag attacaattt caaagaaagt gaaccaattt attacttatg taaacaagca       720
     cttaaggaaa tgcaatcgaa tgttggaccg attcaaacga aatcatttat tgtggcttgc       780
     gtctaaaatt gttgtcgtta ttgataagcc agaaatgaca ctatgcaaac ctagccgaaa       840
     acagttaaca tatgaagatg cagggcctca acctaaaaaa aaaattagca aattagctgg       900
     ctgcagaaca agggcattca acaccacttc tcgtacatgc tgcttcaatt tccgcaaaaa       960
     aaacgaagca ggcagaaacg gcctttgtat taaaaaaaaa aggataagca gtgaaaacat      1020
     acatgatata aaaaagaaaa ttgagacaaa tcatcctatt aaaataagtg ctgataatgc      1080
     tttagctctc ttaattgaaa atggatttac aaagcagcaa tataataata taaaagcgct      1140
     caataagcag caaggatgcg atattttccc tccttattca aaagtagcag aagcaaaatt      1200
     gaaatgcagg ccttccgaac ataaaatttc tgaaaaaagg ccaggagtat cgtagcaaga      1260
     tttgctagat catacagctg gccacatatg tggaatcaaa tggtaagttt ttaatgtttg      1320
     ctcagaccca acgaattgta cattaattgt gagctatggc ttcgatggat ctacggacca      1380
     aagcacgtac aaacaacgct ttctatcaaa cgaatgtatc gccctagatc aattcctttt      1440
     cgtcactcca attataccgc tgaaactaat agatgaaatc aacaatcgag ttatttggat      1500
     acattcatct ccacaatcgg tgagatttgt cggcctttga aaattgagtt tataaaggaa      1560
     cgtgctgccc ttacattgaa gaaaaaacaa atttggatgc ggctataaaa aaccttagac      1620
     catattccta cacttccaaa aaccaaataa tagcatatac tgcagaccag cgttcgttct      1680
     cgaacagcaa gatattttcg tccgttttga atttggacta caaaatcatt tacaattttt      1740
     atataatttt gatttcaatt tcttgtgagc acatgattga tgcgaaaaat ttaaatctct      1800
     ataccattct acttttaatt tatacgttaa atacgaacct tatatgagat acatacatgg      1860
     taaaatagag tagtcaccaa ccaatattgg tacatggata taaaattgta agccaattta      1920
     ttgttcctgt tagtgtcctt ggagaaaacg cgtcagaagc gcgcaacaaa ctttacaaga      1980
     gcgatagaaa atctcacgcc aggaaatgta gccgactagc aaacattaca gatgttttca      2040
     gagcagtgga ttcatctgat ccattgcttt caagtctttg tctaagagat cgaagtaagt      2100
     ttggaaaaaa gaaactcctc ccaaaagaag taatcgatat tcttcaaaat ccggatgcag      2160
     aactttataa atcaagttat cattctaata ataaagaaaa agaagtggaa gtggaagacg      2220
     aattcaattg cctttataat aagaggaggc agttgaagaa tgacaatcaa cttaataaaa      2280
     tataaaaaaa tttattgact tttatctcat aataatggtt tttgcatctt gtgtcctcac      2340
     ttcgctccca cgccaatccc ccagggaaga cacctccgga tccaccggtt gaaccacaga      2400
     catattaaca cccacacctc cttcgccacc catccatctc cctttaaaac cgctttcatt      2460
     tgtatataaa tacatttttc actttatttt caaggattgt ttttgtgggc ggagatgaag      2520
     gcgtggtcag atcaaaaaat aaacaaaatc caaaattcta tttaaatcct aattataaat      2580
     ataaaaaaaa tcaagtcgct atctttaaaa ttgtaattaa taccaaaatt tccggctttt      2640
     tacccatagt g                                                           2651
//
ID   DMHMR1      repbase;    DNA;    INV; 782 BP.
XX
AC   X52809;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. melanogaster DNA non-mobile heterochromatic moderate repeats
DE   (HMR family).
XX
KW   Repetitive sequence; Heterochromatic moderate repeat;
KW   HMR repeat family; DMHMR1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-782
RA   Shevelyov Y.Y., Balakireva D.M., Gvozdev A.V.;
RT   "Heterochromatic regions in different Drosophila melanogaster
RT   stocks contain similar arrangements of moderate repeats with
RT   inserted copia-like elements (MDG1).";
RL   Chromosoma 98, 117-122 (1989).
XX
DR   GenBank; X52809; Positions       1     782.
XX
SQ   Sequence 782 BP; 190 A; 185 C; 190 G; 217 T; 0 other;
     tttttatttg aatttgggcg atttgagttg catcaaggcc ttcaggtgca accgaaagcc        60
     taggtactgg aagtgcaagc gctttgttta gaaaacaacc aggactatat tcggagaatt       120
     acttaccgtg ggtcgtccag gggcgatctc aagttcggca gcagcgagaa gaagatgtcc       180
     gggaagctgg gcccgaacat cgctccgtcc agctgtgtat cagacttcgg atgaaagttc       240
     tttttacacc gtgggcagta gatcttgacg gttgacttcg cccatacatc gctgaggccc       300
     actggcaggg tgttctgcta tcacaggaga tattgggaca cgattcaaaa tctccttgca       360
     tattatttcg gtgcatagca atcacgccac gctctgactt gatgtatcgg gcgtgaatca       420
     tgccgtacca ctttttttca tcgccgtaca acaagccaga ggaactgtcg atcaccggct       480
     tcaggatcac gtccagtatc tcgctgaaat actccaagcc catctggttg aacgtatcct       540
     gcacgtagtc ggtgggcacg cgggagaggg actcgttgcc cttgatcccg aggaaccaat       600
     cgatccagct gctgttgttg ttctggctac aagattttac tgtgacttgc tataatttct       660
     ataggaaaaa cctagttact tacgagctca acatgttgcc agtttacttg ttcacagaaa       720
     tatgacttgt agacttcaaa gtcatcgtct tcttctttga cttttgacac gtgctaaaag       780
     gc                                                                      782
//
ID   Transib1_DP repbase;    DNA;    INV; 2983 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib1_DP is a family of autonomous Transib transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; transposase;
KW   Transib1_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2983
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology0-0 (2005).
XX
CC   [1] (Consensus)
XX
CC   Transib1_DP is a family of autonomous Transib transposons. The
CC   consensus sequence encodes the 698-aa Transib1_DPp transposase
CC   (pos.
CC   270-288, 542-2616. Transib1_DP elements are characterized by 5-bp
CC   target site duplications and 41-bp terminal inverted repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(270..288,542..2616)
FT                 /product="Transib1_DPp"
FT                 /translation="MDFKGPDQLEFCHATLLDVWIDNGRNSTALANWIVGQ
FT                 LTECSLTNENISEINKKVKSLAIYISSNLQKCKRNMRTFRKKTFTENKEET
FT                 HSLQLGRPRLTYDEAGPRLKRKLAADVAIGYKNDTSLLIHAATMSARKSYA
FT                 NATAFLLKNVGTSESEATEAKGKLDIVEPILLTTNDALEFLLENSLSKRLY
FT                 NEIRQISKQHNFDIYPSYQNVQEAKLQLRPAGITATETMAKVALQHLLNHT
FT                 ASRIILLQEELFANFENVSSITLIASYGYDGSTGQSMYKKRFETKEPDTFD
FT                 QSLFVTTLIPLKLIDEAGTIFWNNRTPQSVRFCRPLKMEFAKETKDHILAE
FT                 KNDLDTQMKNLTPCVVTISNEKKITVSYDLHMTLIDGKVLNVLTGTKSCQL
FT                 CSICGAGPKQFMETYDTNSFKPNPRRLHYGISPLHAWLRIFELLLKISYRM
FT                 GFKKWQVRNENDKLEMIAKKKKHIQRRLWQEMGLHVDKPKQNGSGNSNDGN
FT                 TARKAFSNTKLFASILELDLELLESLHTILIAINCEFAIDALKFQNFSDKT
FT                 IRSYMLHYSWYPMSPTLHKILVHGSQIITASVMPVGCLGENASEAKNKFYK
FT                 RDRLMHARHNSRVNNMMDVFQRSMDSSDPLISSISIKKRAARHKKQTLPRD
FT                 VIELLETPHCNFPKNIQPLANDYSFDYDSNESELEDINPYSFELSVQNN"
XX
SQ   Sequence 2983 BP; 1049 A; 513 C; 533 G; 888 T; 0 other;
     cacactgggc ggaattccca aataagtggc ataaagtcga aaattttgtc gaagcaaata        60
     ttaattatat ttcaatatat tgaaagtaga atccctatat attacaaatc aataaatttt       120
     gttgctaaaa atgcaaccct gtcattctga tcaaacttca aagtcagttg attagtcagc       180
     tgattcctgc gacaaaattg gcgggaaatt tttattcact ttgagcgctt ggcaaattca       240
     cacattgcaa aaataaaata ttgtgaaata tggattttaa aggcccgggt atgtagattg       300
     aataacaaaa aacattttgt gttaaaatgt gttatatgtt atataggtta attgttttgt       360
     attgtccaaa aaaaacgaaa accaaaccaa tgtgttcgtc ttgtgtggag taaaaactaa       420
     ccttctgcgt gtttgtgcgt tatgtaatgt atgttaaaat aaagtagaaa gtgtgtatta       480
     aaagtaagta ataatccggt ttgcggcttt ttgcggctct tgcggtactt tgaactttta       540
     gatcagcttg agttctgtca tgcaacgctg ctggacgtat ggatcgacaa cggccgcaac       600
     tctaccgccc ttgcaaactg gatagttggc caattgacgg aatgttcact aaccaatgaa       660
     aacattagtg aaattaacaa gaaagttaaa agccttgcaa tttatatttc ttcgaatctg       720
     caaaagtgca agcgaaatat gcgcacattt agaaaaaaaa cattcacaga aaataaagaa       780
     gagacgcaca gtctacaatt gggtagacca aggctaactt atgatgaagc agggccccgt       840
     ctaaaacgaa aactagctgc cgatgtagca atcgggtata aaaacgatac cagtctttta       900
     attcatgcag caacaatgtc agccaggaaa tcatatgcaa atgctactgc atttttactt       960
     aaaaatgttg gcacttctga aagcgaagct actgaagcta aaggaaagct cgatattgta      1020
     gaaccaatac ttttaacaac aaatgatgct ttggaattct tgctggaaaa ttctttaagc      1080
     aaacgattat ataatgaaat tcgtcaaata agcaaacagc ataattttga catataccca      1140
     agctaccaaa atgtccagga agccaaattg caattgagac ctgcgggaat aactgctaca      1200
     gaaactatgg caaaggttgc cttgcaacat ttgttaaacc acactgccag ccgcataata      1260
     ttgttacagg aagagttatt cgctaacttt gaaaacgttt ctagtattac attaattgcg      1320
     agttacggat acgatggatc aactgggcaa agtatgtata aaaaaagatt tgaaacgaag      1380
     gaaccggata cttttgatca atctttgttt gttactaccc ttatacctct gaagcttatc      1440
     gatgaagcag gaacaatttt ttggaataat agaactccgc agtctgtaag attttgccga      1500
     ccactcaaaa tggaattcgc caaagaaaca aaagatcata ttcttgcaga aaaaaacgat      1560
     ttggacacac aaatgaaaaa cttgactcct tgtgtagtaa caatttcaaa tgaaaagaag      1620
     atcactgtct catacgacct tcacatgact cttatagatg ggaaagtttt aaacgtttta      1680
     acgggtacaa aatcttgcca attgtgttca atatgtggtg caggcccaaa acaatttatg      1740
     gaaacttatg atacaaattc ctttaagcca aatcctcggc gtcttcatta tgggataagt      1800
     ccacttcatg cttggttacg catttttgaa ttgctgctta aaatatcata tagaatgggg      1860
     tttaaaaaat ggcaagtaag aaacgaaaat gacaaattgg agatgattgc caaaaaaaaa      1920
     aaacatatac aaagaagatt gtggcaagaa atgggattgc atgtggataa gccaaaacag      1980
     aatggaagcg gaaactcgaa cgatggcaac actgcgagaa aagctttttc aaatacgaaa      2040
     ttattcgcat caattttaga actcgatttg gagttacttg agagtctgca tactatttta      2100
     atagctatta actgcgaatt tgcaatcgac gctttaaaat ttcaaaattt ctcagataaa      2160
     accattagat catacatgtt gcattactct tggtatccta tgtcaccaac tctccataaa      2220
     attttagttc atggatcaca aataataact gcatctgtga tgccggtagg ctgtcttggg      2280
     gaaaatgcgt ctgaagcgaa aaataaattt tacaagcgtg accggctaat gcacgctcga      2340
     cacaattcgc gggtaaacaa tatgatggat gtattccaaa gatctatgga ctcttcagat      2400
     cccctcatct caagtatatc cattaagaag agggcagctc gacataaaaa acaaaccctt      2460
     ccgcgagatg tcattgagct tttagaaaca ccccattgta attttccaaa aaatattcag      2520
     cctttagcta atgactacag tttcgattat gactcgaatg agtcggaatt agaggatata      2580
     aatccatatt cgtttgaatt atctgtacaa aacaactaaa tgataattta acatcaattc      2640
     ttagaaatag ttaaatagta gaataagaat ttgatcataa taagaattgt ttatcaaaaa      2700
     atttgtttta tatttttata tttaccacta ttacatcaaa attacaacag aataataaat      2760
     tcccttaaaa ttgtagtact tttttatagc tctcatgact ttcctttgtg atcacgtata      2820
     cgccttgttg ccatatatgg gctattgcgg taggcgtggt cagatgaact taaaattttg      2880
     ttcaaatatt tagagtgcta tatttattaa atacaccaag tttcagctcg atatctgctt      2940
     tattcgactt tatgccactt atttgggaat tccgcccagt gtg                        2983
//
ID   Transib2_AA repbase;    DNA;    INV; 796 BP.
XX
AC   CC150426;
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Transib2_AA is a DNA transposon, a partial fossilized copy.
XX
KW   Transib; DNA transposon; Interspersed Repeat; DDE-class;
KW   TRANSIB superfamily; Transib2_AAp transposase; Transib2_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Culicinae; Culicini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-796
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 Core and V(D)J Recombination Signal Sequences Were Derived
RT   from Transib Transposons.";
RL   PLoS Biol 3(6), e181-e181 (2005).
XX
DR   GenBank; CC150426; Positions     796       1.
XX
CC   Transib2_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib2_AA encodes remnants of the Transib2_AAp transposase.
CC   The transposase is not perfectly recovered due to available
CC   sequence
CC   data.
CC   Conceptually translated Transib2_AAp transposase:
CC   RLPFKTWQVRGDVNKKTFEERKKRILNEFKVQLGLIVDKPKPGYGTTNDGNTARTFFAHPKVSAAITGVD
CC   ETLIVKFATILRVVACGREIDIPKYRELLLETREQYFSLYSWYYMPLTVHKLLIHSANIISMFELPVGEL
CC   SEEALEATHKIIRRARLNHTRKSSRINTNEDLMRCLLLNSDAFL.
XX
SQ   Sequence 796 BP; 249 A; 152 C; 159 G; 236 T; 0 other;
     tacgttgtct cacgaaaaag catcagccaa atgttacatt tgtggtgcaa ccccgaaggg        60
     catgaataat cccgaagttg atcagaaacc tgaaaataca gataatatgc gatttggaat       120
     gtcggtttta tactgctgga ttaacatgtt cgattgcttt cttcatatcg cttacaggta       180
     tttattcatt tatttctttc cagtgtaaac caattgatca tttttttctg tttttttaaa       240
     ggctgccttt caaaacttgg caggttcgtg gagatgttaa taagaaaacc ttcgaggaac       300
     gtaagaaaag aatcctgaac gagtttaaag ttcagctggg attgatagtt gataagccta       360
     aaccaggcta cggcacaacc aatgacggca atacagcgcg tacttttttt gctcacccta       420
     aagttagtgc tgctattacg ggcgttgacg aaactcttat agtaaaattt gcaactatac       480
     taagggtagt tgcctgcgga agagagatcg acattccaaa atatcgggaa ttgttactgg       540
     aaacaaggga acaatatttt tctctttaca gttggtacta tatgccatta accgtgcata       600
     aactgctaat acatagcgcc aacattattt caatgtttga gttgcccgtc ggcgagctgt       660
     cagaagaagc cctagaagct actcataaaa tcataagaag agcccggttg aatcatacca       720
     gaaaatcgtc cagaatcaat actaacgagg acttaatgag atgcctgctc ctaaattcag       780
     atgcttttct ataagt                                                       796
//
ID   POKEY_DP    repbase;    DNA;    INV; 6631 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.1, Created)
DT   17-NOV-2004 (Rel. 9.1, Last updated, Version 1)
XX
DE   Daphnia pulicaria transposon Pokey - a consensus.
XX
KW   piggyBac; DNA transposon; Interspersed Repeat; POKEY_DP;
KW   piggyBac-like; putative transposase.
XX
OS   Daphnia pulicaria
OC   Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda;
OC   Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia.
XX
RN   [1]
RA   Penton H.E., Sullender W.B., Crease J.T.;
RT   "Pokey, a new DNA transposon in Daphnia (Cladocera: Crustacea).";
RL   J. Mol. Evol 55(6), 664-673 (2002).
XX
RN   [2]
RA   Gentles A., Jurka J.;
RT   "Pokey transposon from Daphnia pulicaria.";
RL   Direct Submission to Repbase Update (OCT-2004).
XX
CC   [2] (Consensus)
XX
CC   Predicted protein sequence from Ref [1].
CC   putative_transposase:
CC   MQKKADAKKVAQHKAVNRNWKECKVWGDVGRQSRADDDSPRPQFKERAIQFAPLEEPGPVLSQF
CC   SRFSSPLGVFKTMLGGEDTLYLLREATNDYIAEFWNSRKTPPSRKVGGKPEGRLIGPRLPAGGF
CC   VTDHELIAFFGIQFLIGYHRLPELSMFWEQQPDTGLGLGIIQQAMTRERFKFISKHIACASPWD
CC   DVDPNSDDPDQEPERPDPIRKIRPLVKRLNESYHVCRKPPRGQSIDESMVKYKGRSMLRQTMKN
CC   TPIKSGFKIWSRCCLRGYTYKFEIYQGARFGEKQKRSRNNEAVERVVVDLCQPLTDQGFVVAFD
CC   RFFTSIALLDKLRENGVNAVGTILPSRVNQPIMTKNESNLRPDEFAAKFGGEPGTCRKGIFVWR
CC   DTKAFRVASNYHGSDIVKVRRRQRDGSFRSKSCPKAIDDYVNNMGGVDTANQLRSYYERDRKAK
CC   KWWHRLLYSLLETCLVNSWICFNDIVRSQMAEIKNLNTQ.
XX
SQ   Sequence 6631 BP; 1865 A; 1385 C; 1726 G; 1650 T; 5 other;
     ttaacccttt ttcgactgac gggacgtttc tttttcgacg gctttcagta gggtctggtg        60
     ggacctcgcc cacagacacg agagatttca aatcggctaa attcattcct atcaaagctt       120
     atatctcgaa atccatccta cagaattgaa ttgccttaca acgaaaaatt aattgaccta       180
     ccgtctttca atgataaaaa ggaggagaaa ttaaaacgag tatttctcgt gttttaccga       240
     gttttcggtg acgggacatt tctggcccgt caggcggctc tgatcgaagt ctacacgaga       300
     accttcgatc tggactgtcg ggacatataa gtctccgcca gatatgtccc tccaggcggc       360
     tgcaatttta tcaaaagccc ggccagattt gaaccaccag gtggttgggc actttttcaa       420
     gtattgatca gtggtgagct cctagtgtaa cgtgcactgg gatgatctga aattcggttc       480
     atttcgatag taggatcatt tcaggagtca gaattagtga tgccgcgctc agtagatatt       540
     tgataaaagg gaaccaacca ccctggttag agatgtcagg aattgtgagg ttttatttgt       600
     gttcctcatt aaaaaaaaca aagaagtaga gctgaccagc caggcaggcg cggtcgaaag       660
     aaatgggatc gagcgatggt tggatagata tcgaagggaa ggcgaaagag gcgaaaagga       720
     aagcgcgaaa tttctttagt agctttgacg caaaaacttt ggtatcgacg gggagctttg       780
     ggaaatggaa cgaagacgca gaatgggaag ttgtccgatt cggcgttagt tgtagtttca       840
     tttccatcgt agctgagctc ctttccgacc atcaattggt tttattttga ttccgcacgg       900
     gcatatatga gttcgagagc atggcgggtg aaagaaatga attcgaagtt gtgtttggat       960
     gggaagctct gttggaatgg gtcaaaaacg aagaatcaga agtgtccgat tcaaagttac      1020
     tagtttcatt ccttgtggcc agagctcctg aacctacccg ccgcttcaaa tgaattcagt      1080
     ttcgattccg ttgcgtcgct tctcggtctt atagtaccca cctgtctacg gccggaagat      1140
     ataaatccga accgaaagat tatgagagag acgagggtat cgacccgcga aagcaatttt      1200
     accctaggaa gtctcgaaag tcggttgctt aatcaggaag tgaatacctg atggtgatgg      1260
     tattattaat tcttccttga ttaccgatgg aacagcaaag cgaaagattg gagacgaaaa      1320
     gaggagagtt catccccaat tcgaatctta gtagttttca tctttcgtgt tctactcacc      1380
     ggtccaagat cgtggaattc cacttctgta cacagttcgc gtaatggttt taaatgatgg      1440
     atatggtcga agcggtcggt gaatggttcg aatcagagac gaaagcgttt tggcagataa      1500
     ctcctaacac gtttatttgg gctggtcccc gtgcccattg cagtaccggg cgaatgcgcc      1560
     aggcgccgag tcttgaaaaa tcgaaccttg ccgagtcccg acgacggggt agtgacgtcg      1620
     ttgccgggac ttggatgaat gcgagcttgt ggaagacaaa ataatagacg aacggtgcaa      1680
     ttcatcctgc tgaacttttt gttcgaatac tgatgaaact taaaaaccta gtaatctttc      1740
     caatacaaga gtaactccga ttcatttgcc cgattgccgg gttttgggcc gcctagaaat      1800
     gatcctgatt caaccagaaa tctttccgga tttatagtgc ccgttgggtg gtcagcaatg      1860
     cctcttgtct tgtcttttct gtgcgttgat cacaaatgtg tggcaatctg tggcagatgt      1920
     gaaaagcgct ggataagatg agaaacaaac cccgtattat tgaatgtgca tgcatgtccc      1980
     agcatgagga gaccgtcgaa ccaaataaaa ttggatcctt ttggccaata tagaagcctt      2040
     gaataaacat ggtaataaaa aataaagtcc taagagtttt ttggaagtgg cgtagagacg      2100
     aatgtctcgt gaattggctc ctaatttaac ctagagccag gtgcaaattc gattaagcca      2160
     gagcagactg gccggttaga gatgtcagaa attcaaagtt cagatatgtc agaaatatat      2220
     tggacaacac ggatgaaaga aaaatgaagg ggtggttgta atgaattccc ctgggaatta      2280
     gcgaaaacag aacgggaagt gtcagttcta aatagttttt ttccaggcgg tatttttatt      2340
     ccgttccggt ccgtgtaatc gaatgaaatg aatttgaagc cggtggttgg atagatatcg      2400
     aagggaaggc gaaagaggcg aaaaggaaag cgcgaaattt ctttagtagc ttcgacgcaa      2460
     aaactttggt atcgatgggg agctttggga aatggaacga agacgcagaa tgggaagttg      2520
     tccggttcgg cgttagttgt agtttcattt ccaccgtagc tgagctcctt tccgcccgac      2580
     gctccttatt tatttttatt cctatctggg tgccgcgcga cttaagtgtc cgcgatgcct      2640
     caaatacaaa taaaaaaagg gttcaagtga atttgaagcc ggtggttgga tagatatcga      2700
     agggaaggcg aaagaggcga aaaggaaagc gcgaaatttc tttagtagct tcgacgcaaa      2760
     aactttggta tcgatgggga gctttgggaa atggaacgaa gacgcagaat gggaagttgt      2820
     ccggttcggc gttagttgta gtttcatttc catcgtagct gagctccttt ccgtccaacg      2880
     gttcttttga attgatcttg aagtcttcga ggcgctatta gtgcccgtgt aattaaattt      2940
     tacacaaagc ctcttgtact ttcttatccg tgcgttgatt actgctgtct cgtgaggaaa      3000
     ctccgaaagg cggtgaaagg cgctggataa gaatcagccc cggtaactcc tgcatgtgca      3060
     tgcttttccc ctgcatgata aaataagacc gtcgtataag gcttaggacg taaggcaatt      3120
     cgttatcctt ttgccgaatt cacaaagact aatcgtgcct tttttttcga ttctgtattt      3180
     tcagattgat taaaaatggc gaaaaataaa aaaagagaga cccaagatat actaagtcga      3240
     gagccgtgaa aaattcagcc aagaatgccg ccgccgcagc tgtattaaaa aggaggcagc      3300
     tgaaagaaga aagagaacgt ttagctggag atcaagagcc ggtaatcaat tttgatactg      3360
     taccggaggc tcaagatcag gaggaggagg cggttgccgt cgaggagccg gtcgaggagc      3420
     cggtcgagga gccggtcgag gagccggtcg aggagtcggt tgagaagccg gatgaggagc      3480
     ctggtcagga gttggttgct tcgcagcggc cggaacttga tcaggatccg gaaatagagg      3540
     atgaacaatc tgcctcagag gatgatgaac aaaaagctgg gacagaagaa gaggagccgg      3600
     tggtagagcc attaaccccg aaagacgtta cagttcaact tgaacgattg gaactatcac      3660
     cggcgacgct tcaaagactc aaaagagttc aaaaagcgaa aaaaagaaag gaacgtgaag      3720
     acagttcaaa gagtggctcc tccccaccaa aacgaaccag aagtcagacc cgaagaccaa      3780
     ctagtgcagg gtcttcttct gaaacggccg atcccgatgg tgaagtaaca cggcactaca      3840
     cagggaaaaa ggtcggtctc acgaacgcga ctttgaggtg tcgtgggcct cgcgttctta      3900
     cagcgcatcc gttccggctg gccaaaaaaa cgaactcaga ttcggccaag ctgaacatgc      3960
     aaaagaaggc cgatgccaaa aaagtcgccc aacataaagc cgtcaaccgg aattggaaag      4020
     aatgcaaagt ctggggcgac gttgggagac aatcacgggc tgatgatgat tcaccgaggc      4080
     ctcagttcaa ggaaagggca attcagtttg cacccctaga agaaccaggc cccgtgttga      4140
     gtcaattcag tcgtttttcg agtcccctcg gagttttcaa gacgatgctt ggtggtgagg      4200
     acactttgta ccttcttcgg gaggcaacaa atgactacat cgctgaattc tggaattcaa      4260
     ggaagacgcc accgtctcga aaagtgggtg gcaagcctga aggcaggtta atcggcccgc      4320
     ggttgcctgc tggaggtttt gtcacagacc acgaacttat agccttcttt ggcatacagt      4380
     tcttgatcgg atatcaccgt ctgcccgagc tgtcgatgtt ctgggagcag caaccagaca      4440
     ctggtctcgg gctcggaata attcaacagg ccatgactcg cgagcgattc aaattcattt      4500
     ctaaacacat agcttgcgca agcccatggg atgatgttga ccctaattct gacgacccgg      4560
     atcaggagcc agagcgaccg gatcctatcc gtaagatccg tcctctggtc aaaagactca      4620
     atgaaagcta tcatgtgtgt agaaagcctc ctaggggtca gagcatcgac gagtctatgg      4680
     tcaaatacaa aggccgctca atgctgaggc agacgatgaa gaacacaccg atcaagtctg      4740
     gtttcaaaat ttggagccgc tgttgccttc gtgggtatac ctataagttt gagatctatc      4800
     aaggagctcg ctttggggaa aagcaaaaaa gatctcgtaa taacgaggcg gtggagagag      4860
     ttgtcgttga cctttgtcaa cccctgacag atcaaggttt cgtagtggcc tttgaccggt      4920
     tctttacgag cattgccctc ctggacaagc tccgcgagaa tggtgtcaac gccgttggaa      4980
     cgattcttcc aagtcgggtc aaccaaccca tcatgacgaa gaatgagtcg aacctgcggc      5040
     cggacgaatt tgcagccaag ttcggtggtg agcccggaac atgccgaaag ggaatcttcg      5100
     tatggagaga cactaaggcg tttcgggtcg cttccaacta tcacggctca gatattgtca      5160
     aggtcaggag aaagcagcgt gatggttcgt tccgatccaa gtcttgtcca aaggctattg      5220
     acgattacgt caataacatg ggcggtgtag acacggcgaa ccagctgcgt tcttactacg      5280
     agagagaccg taaagccaaa aaatggtggc accgtctctt atactctctc ttggagacat      5340
     gtctggtgaa cagctggata tgcttcaatg atatggtgag atcacagatg gcggaaatta      5400
     aaactttaaa cacacaataa tttccgtttt ttttcttgac ttaggtcgag gaaaattatc      5460
     tggaggatta cgaagttcag atgccgtttc tcgagttcaa acggaacgtc acgatgggtc      5520
     ttttgtccca cgccctgaac gaaaataaaa ccaaagctgg tcgagccggg cgaatgatgc      5580
     caaccattca cccttccgct gaaccaggag caaagcggcg gaaaagtcga ctgagtgtaa      5640
     gggacgacat tcggttaact tgtgtgggca accatctacc catctttggg gaggcgagag      5700
     gcaggtgcga gtggtgccag gcaacgacac ccaaaaaatt ggaatcaaga ccattctcaa      5760
     agtgcaaaca atgtaatgtg tttttgtgtc tcgggaagaa gagaaattgc tttgtcgagt      5820
     ttcacgatga taattacact caatctgagg aggaggctcc gctggacgag gtggaagctg      5880
     tctattccgc ttcggaggaa tcagacggcc aagcttctga ccatgagcca accaacaagg      5940
     agtgttcttc ttcatccgct gattccgacg agctagaaka ttctaaccga cgtgawggct      6000
     atatrattga tgattatgat gatttccaag accgtgatgg atttgtaatt gatgaatatg      6060
     atgaatttca gcaataaatt tgtgttttgt ttcgtacgtc mttgtgcatt tttactcgaa      6120
     agtgcggcta cttgccagag tggtgaccga cgaaggatct gactgacttt tctaattaga      6180
     gatcctattc cttttcataa ggagccgtcg actggaaaga cccctggtcg atggtaaaga      6240
     cctcaacgtc aggcggggcg cctttcattc tgccaggtga atgagagtca agcccgcctg      6300
     acgggacaca agaggcacat taaacggcaa aagtctctcg ggacaaatat gacgaaaaaa      6360
     actcgagccg tctgtcggga caaaaatttg aacaagtggt agttgcatgc aactrtcggg      6420
     acaaattttt tgtcccgcta gacggctcga gtcgaaaaaa gtgtctcttt ttagagacca      6480
     tgtccgcctg aagggacatt cctgtcggga caacggtggc cgaaacgcgg ttaggccgga      6540
     aaaaatcgga tattccgaat ttttttttaa tgagtggtct taggaccact caatgatatt      6600
     tcgatcgagc attcaatcga atccgaccat c                                     6631
//
ID   LMRP1       repbase;    DNA;    INV; 214 BP.
XX
AC   L42505;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Leishmania major DNA repeat.
XX
KW   LMRP1; Repetitive element.
XX
OS   Leishmania major
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-214
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42505; Positions       1     214.
XX
SQ   Sequence 214 BP; 52 A; 67 C; 67 G; 28 T; 0 other;
     gcaagaatca agaggccgtg ccagagatgg gcgaaggggg acggtgggag cgtgaaagag        60
     acgacgggca cgtggcgacg cccgcggaaa gaaagaaagc agaagacgcg tattccattg       120
     tgctgatgtg tgccagcctc tctgccacag atcacgagct cagctccact ccaccctaac       180
     gccccctcgc cgcacggccc tgtcacaggc tccc                                   214
//
ID   MARINER13_CB repbase;    DNA;    INV; 1303 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 1, Created)
DT   13-MAY-2004 (Rel. 1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA; mariner/Tc1 superfamily; Cb000107; MARINER13_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1303
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-1303
RA   Pavlicek A., Jurka J.;
RT   "MARINER13_CB - a family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Direct Submission to Repbase Update (APR-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are 99% identical to the consensus.
CC   The central region harbors similarity to mariner transposases,
CC   however, no elements seems to contain an intact ORF.
CC   Distantly similar to BMMAR3 from Bombyx mori. MARINER13_CB
CC   contains perfect 26bp-long TIRs and is flanked by TA target
CC   duplications.
XX
SQ   Sequence 1303 BP; 324 A; 299 C; 312 G; 368 T; 0 other;
     cagggtccgc caaaattacg tgtgcaagtg tagatgacgt tatctccaga agtagatgcg        60
     agattaagac gaaatttaac agatagttta tttcaacgct tgaaatcata attcaacaaa       120
     aattattcga ttctacctcc tttggcagcg accacggcac gaagtcgtcg agggaaggca       180
     tcaatggtgg cacgcaggta ttcgacggat aatttgtccc attcctcaga caacgacttc       240
     ttcagggcct cgatatttgc atgaggtctt gcgcagacct tattctgcag aactccccat       300
     acggagtagt cgagcgggtt cagatcaggc gacgaagccg gccattcgtc ctttggtatg       360
     aaggcgggga agtggtcctt gcaccactgt tgagccattt ttgcggtatg agcaggcgct       420
     ccatcttgct ggaagatgta tttcttctga ccgaagtggt tttgagccca cggtagcaca       480
     tgcttctcca gaatctcctc aacgtagtat ttttggttga ttttcacgcc tttatcaacg       540
     aaaacaagcg gacacttccc atcatagcaa accgctccga aaaccatgat gctcgcagga       600
     tgagaggctc gatggattgt tttaccacgc tcagctgctt gttgaatatt tgtggccagc       660
     actcggtggt tttggctatt aaattcagcc tcgacactga agagtttctc gtccgagaag       720
     atggtgataa gatgatcctt tttgcgcgtg ccagcgagaa ggcgcttcgc tttgatgagc       780
     cgtttctcct tattggcttg ggatagaata gcagcttttg ttgctcgata agaggtcatc       840
     ttcagctctt ttctgacaat tctcctcatt gatgtatagg agatatccat gtcatctgac       900
     atctttttca tggaacgatg agcatttcgc ctgactttct cccggacggc cttgactttc       960
     gctggagttc ttacagtcct cggtcttcct cttcccgtac ggtccttgag gtggccaagc      1020
     tggttgaaac gacggatggt cgcgaaaacc gtgtttcggt gcactccgag tcgtttagaa      1080
     atgtctcctg tgcttaaacc tcgcttgtaa aagtcgacga tcagagtacg atgaggactt      1140
     gccgctgtca tttacctaaa acataaccga ttgggatgaa acttggcaaa ctaataaata      1200
     atgaaataat taataaaaat tttaaaaaat tgcgcaccaa aagtgcgtca gtgcgcagcg      1260
     ccatggcgtc aaagttgtgc acacgtaatt ttggcggacc ctg                        1303
//
ID   Saci-2_INT  repbase;    DNA;    INV; 4216 BP.
XX
AC   BK004069;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Schistosoma mansoni Saci-2 LTR retrotransposon: internal
DE   sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Saci-2_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004069; Positions     260    4475.
XX
CC   Key Location/Qualifiers
CC   CDS 9..4157
CC   /codon_start=9
CC   /product="pol polyprotein"
CC   /protein_id="DAA04499.1"
CC   /db_xref="GI:44829171"
CC   /translation="MEVFTKKRDENLNEPPVIPVKPTTGSAPRQPPLLENSSDYTVWK
CC   FKVAAYLRKVPASEQFDYLVSYLSDEATKRAIVNGFAADNTLAQNWKILDDCFSTPVD
CC   PQQAAIRFLSRHQTPGENPMDYFNSLQQMAVQAFPCLDATGRDELIKSRFVEGLLSSS
CC   LKEHFLLNPPTDINSLKRVTFRFMAAEQLKSPLDMHQPTAMAVMQPTKASRPLNPQRI
CC   SNVTRSSHWNSSRRQFNPTEKKWRPTNSYHGRQSECPYCRRFGKNAKKCGHNRFGNTS
CC   KPYIFHLSSYANHVRPITIKARVQGIDIEVLLDTGASVSLIKSEFLGRLNRKVQQTRH
CC   PSTLLTASGDPLKVNSKVWLDLMIDRHSFRHGFFVCPTLTWDMILGVDFMLEHKACIF
CC   MDSLEAKFGETKIRLHHTNTPFKAVSYVGISDLVRQVNDNRTLKEKDRHATIAVPQQF
CC   SSVFEESISGNRTSTVQHTICTGDHRPLRQPPRRVPVHYQPQLDTMIKDMLDKNIIVP
CC   SSSPWASPIVLVKKKDSSLRLCIDYRRLNAITKRDSFPLPRIDAILDALSGACWFSTL
CC   DLASGYWQVEVRPQDRKKTAFVVPNGLYEFQVMPFGLTNAPATFQRLMQTVLQDTVPH
CC   KCLIYLDDIIVYGSTPEQHNANLKAVLHRLQQHNLKVKPSKCRLLQKEVVFLGHRITA
CC   DGVGTDKEKTRVIVNWPQPKSPEDVRSFLGLASYYRRFVRDFASLAAPLHRLTHKGRK
CC   FLWTTECQQAFDALKTRLSSPPILAVPDTSANGGEFILDTDASSSAIGAVLSQVAPDG
CC   QERVIAYASRRLDKSETRYSTTRREMLALVKFLQHFRHYLLGKPFRVRTDHRALQWLR
CC   SFREPEGQVARWQERLQEFDFTCEYRPGSRHTNADALSRIPQTAGTVNAVLSTAVEID
CC   WPSLQAADPDMQIIYQRQLQGNNKPSMKELKDQSLTTRRICTKWSNLKLYGDTLFLIN
CC   EARQPLLVVPRIKVESIVEQVHRKLGHAGERRTEYAVRQRFWWLSMHEDVVQICKNCN
CC   TCCRFKSPRQTSRAPLTPMVTTGPHQRVGIDIMGPLTTTKKGNRYILVMVDYFTKWCE
CC   AVPLPQQDALTVARAFIDHWVSRYGAPFSLHSDQGPAFESRLIAEICQLLGVRKTRTT
CC   AYHPEGNGLVERTNRSIKAILQAFVSRSSQELWDDVLPQCLLAYRTSVHGSTGFSPAI
CC   LLFGHELRLPVEIQTPLLPCEEQEHVPYIRTLRNRLADAYRLVSSNLRKASEHQKDLY
CC   DRRVHGPVYKVGDRVWLRRPMASSGSCSKFHQPWQGPVEIVLIRSSTTFVLRNLQRPQ
CC   DDVITVHYNQIKPDRMTVSSDAQFANPPPATTFYEVPSEGGTAYPCPRPGTEDSAYLR
CC   EGAV".
XX
SQ   Sequence 4216 BP; 1225 A; 1018 C; 930 G; 1043 T; 0 other;
     gagtggtgat ggaggtgttc actaaaaaac gcgatgaaaa cctgaacgaa ccgccggtga        60
     ttccagtcaa gccaactact ggctcagctc cccgtcaacc gccactcctg gaaaactcgt       120
     cagactatac agtgtggaag ttcaaagttg cagcatatct tcgtaaagtt ccagcttcgg       180
     aacaattcga ttatctggtg tcctacctca gtgacgaagc taccaaaaga gctatagtta       240
     acgggtttgc ggcggacaat actctcgctc agaactggaa gattctcgat gattgtttct       300
     cgacgccggt ggatccccaa caagcagcca tccgtttttt gtcacgacat caaacacccg       360
     gcgagaatcc aatggattat tttaattctt tgcaacagat ggctgtgcaa gcgtttcctt       420
     gtcttgatgc cactggaaga gatgaattga tcaagtctcg gttcgtggaa gggttactat       480
     ccagttcctt aaaggaacac ttcctactaa accctccaac agatataaat tccttaaaaa       540
     gagttacatt ccggttcatg gcagccgagc agctaaaaag cccacttgac atgcaccagc       600
     caactgcgat ggcagtaatg cagcccacaa aagcgagtcg cccactgaac cctcaacgca       660
     tatctaacgt tacccggtct tcccactgga acagcagtcg aagacagttc aatcccactg       720
     agaagaagtg gagaccaacg aatagttatc atggtcgtca atccgaatgc ccgtactgtc       780
     gaaggtttgg caaaaacgca aagaaatgtg gtcataatcg ttttggtaac acaagtaagc       840
     cgtacatttt ccatttatct tcttatgcta accatgtgcg tcccatcacc attaaggcta       900
     gagtacaggg tatcgatatc gaagttttat tagacaccgg agcgtcagta tccctaatta       960
     agagcgagtt tttaggaagg cttaatcgta aagtccaaca gacgcgacac ccatccacat      1020
     tactcacagc tagcggagac ccattgaaag tgaactctaa ggtatggttg gacctaatga      1080
     tagatagaca ttcgttccgt catgggtttt tcgtttgtcc gactttgact tgggatatga      1140
     tactcggagt cgacttcatg ttagaacata aagcttgtat atttatggac agcttggaag      1200
     ctaaatttgg agagactaaa atacgcttgc accatactaa cacgccattt aaagctgtgt      1260
     catatgtggg aatctcagac ctggtgcggc aagtaaacga caaccgaaca ctaaaagaga      1320
     aagatcgaca tgcaacgatt gccgtgcctc aacagtttag ttcggtattc gaagagagta      1380
     tttccggcaa tcgcacgagt acggtgcaac acaccatttg cacgggggac cacagaccac      1440
     ttaggcaacc gcctcgtaga gtgccagtac actatcaacc acaactggat acgatgataa      1500
     aggatatgct tgacaagaat attatagtac cgtcatcatc cccctgggca tcacctatcg      1560
     tcctggttaa aaagaaagat tcctctctgc gtctctgcat agactatcga cgccttaacg      1620
     ctataactaa gcgtgactct tttcctcttc cgagaatcga tgctatatta gacgctttga      1680
     gtggcgcatg ttggttttca acgctagacc tagcatcagg gtactggcaa gtggaagtca      1740
     gaccacaaga tagaaagaaa accgcatttg tagtgccaaa tggtttatac gaattccaag      1800
     taatgccttt cggtctaacg aatgccccag ctaccttcca aagattaatg caaacagttt      1860
     tacaagatac agtacctcat aaatgtttga tttatctcga tgacattatt gtgtatggta      1920
     gcacacctga gcaacataat gctaatctga aagcagttct ccatcgcctt caacaacaca      1980
     acctaaaagt aaaaccgtcc aaatgtcgtc tgctgcagaa agaagtagtt ttcttaggac      2040
     atcgtatcac tgcagatgga gtaggcaccg ataaagaaaa gacacgtgtc attgttaatt      2100
     ggccacagcc caaatcacct gaagacgttc gtagctttct tggcctagct tcttactaca      2160
     gacgctttgt ccgtgacttt gcatcattag cagcaccctt acaccgtttg acgcacaaag      2220
     gacgaaaatt tttatggact acagagtgtc aacaggcgtt cgatgctttg aagacacgac      2280
     taagctctcc acctatatta gccgttccgg atacctcagc aaacggggga gaatttatac      2340
     ttgatacgga tgccagttcc tccgctattg gagcagtcct atcacaagtg gccccagatg      2400
     ggcaagaaag agttattgcg tacgctagcc gtcgactgga taagagcgaa acaagatatt      2460
     cgacaacgcg tcgagagatg ttagcattag taaaattctt acaacacttc cgccattatt      2520
     tactaggtaa acctttccgt gtacgcacag accaccgtgc attacaatgg ctccgctcct      2580
     tccgcgaacc agaaggacaa gtggcacgct ggcaagaacg attacaagag ttcgatttca      2640
     catgcgagta ccgacctgga agccgacata caaacgcaga cgctctttcc cgcatacctc      2700
     aaaccgcagg tactgttaat gcagttctta gcacagccgt agagatcgat tggccttccc      2760
     tgcaagcagc agacccagac atgcagatta tatatcaaag acagttacag ggaaacaata      2820
     aaccatccat gaaagagtta aaggatcaat cattaacaac tcgtcgtatt tgcactaaat      2880
     ggagcaatct aaaattatat ggtgacacgt tattcttaat taacgaagcg agacaacctc      2940
     tattggtagt accacggata aaagttgaga gcattgtgga gcaggtgcac cgcaaactag      3000
     gtcatgcagg agaacgaagg acggaatacg cggtccgcca gcgcttttgg tggctatcca      3060
     tgcatgaaga tgtagtgcaa atttgcaaaa attgtaacac gtgctgccgt ttcaaatcgc      3120
     ctcgacagac atctcgtgca ccgttaactc ccatggtgac cacaggacca catcagcggg      3180
     tgggcataga tattatggga ccattaacaa caacaaagaa agggaatcgc tacatactgg      3240
     ttatggtaga ttactttact aaatggtgcg aagcagtacc ccttccccag caagacgctc      3300
     ttacggtcgc ccgagctttc atcgatcatt gggtttcccg ttatggcgct cccttctcac      3360
     ttcattctga tcaaggtcca gcctttgaaa gtcgcctcat cgccgagata tgccagcttt      3420
     tgggagtcag gaagacacga accactgcgt atcacccaga aggtaacggg cttgtagaaa      3480
     gaacaaacag aagtattaaa gccatattgc aagcgtttgt gagcagatcg tcgcaggagt      3540
     tatgggatga tgtccttcct cagtgccttt tagcatatcg tacatccgta catggctcca      3600
     ccgggttttc acccgctatt ttattatttg gacatgaatt acgtctacca gtggaaatac      3660
     agacgcccct gctgccctgc gaagaacaag agcatgtacc gtacatacgt actctccgta      3720
     accgcttggc tgatgcatac cgcttggtca gcagcaattt gcgcaaagct agtgaacatc      3780
     aaaaggactt gtacgatcgt cgggtgcacg gaccagtgta taaggtcggt gatcgcgttt      3840
     ggctacgtcg ccccatggca tcgtcaggga gttgcagtaa atttcaccag ccatggcaag      3900
     gccccgttga aatcgtcctc atccgatcct ccactacgtt cgtattacgt aacttgcaac      3960
     gaccccagga tgacgtgata actgtacact ataaccaaat aaaaccagat aggatgacag      4020
     tttcctcgga tgcccagttc gccaatccac cgcctgccac tacgttttat gaggtaccat      4080
     cagaaggggg gacagcatat ccatgtccga gaccaggcac tgaggacagt gcctatttaa      4140
     gagagggggc ggtgtaacgg ggttgaaatt tctatgtatg atatactaat gcattctatt      4200
     ttctttctat tgtaga                                                      4216
//
ID   HELICOPY2   repbase;    DNA;    INV; 249 BP.
XX
AC   .
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOPY2 is a nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HELICOP superfamily; CEREP2A;
KW   HELICOPY2.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1
RA   V V., Jurka J.;
RT   "HELICOPY2.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
RN   [2]
RP   1-249
RA   V V., Jurka J.;
RT   "HELICOPY2.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   There are about 200 copies of HELICOPY2 in the C.elegans genome.
CC   They are ~95% identical to the consensus sequence. The original
CC   name, CEREP2A [1], and orientation have been changed because
CC   this repeat is a nonautonomous HELICOP-like DNA transposon.
XX
SQ   Sequence 249 BP; 54 A; 35 C; 79 G; 79 T; 2 other;
     atcatttact atatataaag cgcttattcy gtktgtccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgaagtttt ggcttctgga gggatagtga gttggggtta gtgtagggat       120
     atagtcgggg tactgtagtg gtacaatagt ggtacggtag gaatactgta gggttacggt       180
     agtttcagaa aaattagttt tcagccccag aagtcggggg ccgcgccgga ggtgcggtcc       240
     acggctggt                                                               249
//
ID   BXSAT1      repbase;    DNA;    INV; 160 BP.
XX
AC   L09652;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Bursaphelenchus xylophilus satellite repeat.
XX
KW   SAT; Satellite; Simple Repeat; BXSAT1;
KW   Satellite repetitive element.
XX
OS   Bursaphelenchus xylophilus
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Tylenchida;
OC   Aphelenchoidoidea; Aphelenchoididae; Bursaphelenchus.
XX
RN   [1]
RP   1-160
RA   Tares S., Lemontey M.J., De Guiran G., Abad P.;
RT   "Cloning and characterization of a highly conserved satellite DNA
RT   sequence specific for the phytoparasitic nematode Bursaphelenchus
RT   xylophilus.";
RL   Gene0-0 (1993)In press.
XX
DR   GenBank; L09652; Positions       1     160.
XX
SQ   Sequence 160 BP; 43 A; 33 C; 28 G; 56 T; 0 other;
     ccggtgtcta gtataatatc agagtttttc gcccagtgtc ggcgtaattt gattccaaaa        60
     aagctgaaac ttgccatgct aaaatctcag gcgattagct ttcgaatggt gtatgtcttg       120
     tcaattcact ccgtcatcac taattcactt ttttttaaaa                             160
//
ID   LARRP1      repbase;    DNA;    INV; 212 BP.
XX
AC   L42496;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Leishmania arabica DNA repeat.
XX
KW   LARRP1; Repetitive element.
XX
OS   Leishmania arabica
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-212
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42496; Positions       1     212.
XX
SQ   Sequence 212 BP; 50 A; 68 C; 63 G; 31 T; 0 other;
     gcaagaatca agaggccgtg tcagagatgg acgaaggggg acggtgggag cgggaaagag        60
     acgacgggta cgtggcgacg cccgtggaaa gaaagataag ccaaagacgc gtattccctt       120
     gtgctgatgt gtgcccccct ctctgccaca gaccacgagc tcagctccac tccaccctaa       180
     cgccccctcg ccgtcccctg tcacaggctc cc                                     212
//
ID   NDNAX2_CE   repbase;    DNA;    INV; 2846 BP.
XX
AC   .
XX
DT   12-NOV-1999 (Rel. 4, Created)
DT   12-NOV-1999 (Rel. 4, Last updated, Version 1)
XX
DE   NDNAX2_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   nonautonomous DNA transposon; DNAX family; NDNAX2_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2846
RA   Kapitonov V.V., Jurka J.;
RT   "NDNAX2_CE.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   NDNAX2_CE is a putative non-autonomous DNA transposon;
CC   its copies are 98% identical to the consensus sequence.
CC   It shares common termini with NDNAX1_CE element.
CC   These elements do not have terminal inverted repeats.
XX
SQ   Sequence 2846 BP; 797 A; 633 C; 524 G; 878 T; 14 other;
     tctgcctcct tcctaaaacc cccatcttgc cacacacacg cgttttcggt gttcaaaaaa        60
     tgttcaaaaa atgtccgaaa aaattgtaat acaactttga acgtttatat ctcggctctc       120
     actgaaccga tttttgaaat tcttttttct ctacattcac aaaatatagc gacgtgtgtt       180
     catctaaaag ggggttgatt ttggagcatc ctgtcggctc cacaagcgga aaaccacacc       240
     cckcttgttt ttgcgcacac cgaagtactg gccgaaaacc actttaaatt gaaggaaaat       300
     tcgagtttat gttcaaaacg tttgagactc gaaacttaag ttctcctttt caatgcctat       360
     ccattgtatc taagttcatt gtgatatctc tattcgttat tttaaaaacg ataattaaag       420
     ttttgccaaa atttctgcac ctcccccctt ttctcacaca cacacaccca cctccccttt       480
     tcatatttgg tgtgttttcg gccacatttt caccattgtt tcggtcaaat ctccgttagt       540
     cttgctcttt ttccaaattt ttttttggaa aaatgttcat cacatcgaga ggaagcggaa       600
     aatataattt tttgtttcaa aaaaggtaaa taatagtctc aaaaatagaa aaaatgaaca       660
     cttctttcaa acaatttaca tttttccata aaattcacaa actttccact atcgttccgg       720
     tttttatgtt aaatttagaa ttaatagaat gatttaaaat ggaatctcaa atcacagctc       780
     gatccgatca tttttcgcgg agataggtta tttaattttt gcacatggaa atccagtttt       840
     cctctgttcc tggacaagtt ttcaactatc cttttgattt tatgttttaa ttttgataat       900
     tttcactaaa gcaaggtaga caaactaaat ttggtcggtc ttgacaactt tcagcacatt       960
     trkggaagtt ttgagcttcc aggccttccc agaaggtgat atgtttcaat ttttgttatt      1020
     tttaaaaata ataaccgccg tattattcta ctttttacgc caatttcaaa aattatttwa      1080
     tttttctcaa actcctacta tgagcaaagt tatgacggat tgaagtttta gtgcataact      1140
     cctcacaggc cgcctctcct cacaagaggc tgcatgcgtg cgggtggctg gaaaatgttt      1200
     tctttccaaa aaaaaacata gaaaggcact ttaactctaa gaakattcag ttcactttga      1260
     acatatactt caggcattgc aggccggagg cctgctgtgc gattacaact gtttcaagcc      1320
     cagattgtct ggattgagtg ccgcaggcac tcttactctt agaagacgca gtcaacctta      1380
     aatcattata ccaaggcagg ccggaggcct gatatgcgat tactcttaga taagtttgat      1440
     ttagaaagct tttattattt tcagttttct aaaacaatcc ccattcccga agggctgggg      1500
     gcccacaggc gttcacgatt ttccaaaaaa gtgaaatgtt tattttttgg ttatttttca      1560
     aatttgaaaa caccatacga ttttggttta aatactaaat tgaaatagaa atttcgctct      1620
     cttacgatct acgccctacc cactgctaag cctggcaagt cgcagatttg ctatcaacac      1680
     tattggaaac tgtgggctgg ctttgatcct attccaagca gatctgttat tcactcaagc      1740
     ctaataacca ggtttgaggg ccgcaggccc gaatactctt graaactgtg ggctggcttt      1800
     ratcctattc taagcagagc aggctgtagg cctgcgacgc ggttgttatt yactcaaacc      1860
     taacaaccag gttcgagggc cgcaggcccg aatactcttg gaaactatgg gctggctttg      1920
     atcctattct aagcagatat gttattcact caagcctaat aaccaggttt gagggccgca      1980
     ggcccgaana ctcttgraaa ctgtgggctg gctttgatcc tattctaagc agatctgtta      2040
     ttcactcaag cctaataacc aggtttgagg gccgcaggcc cgaacactct tggaaactat      2100
     gggctggctt tgatcctatt ctaagcagat atgttattca ctcaagccta ataaccaggt      2160
     ttgagggccg caggcccgaa tactcttgaa aactgtgggc tggctttaat cctattctaa      2220
     gcagagcagg ctgtaggcct gcgacgcggt tgttatttac tcaaacctaa caaccaggtt      2280
     cgagggccgc aggcccgaac actcttggaa actatgggct ggctttgatc ctattctaag      2340
     cagagcgcgt atgttattca ctcaagccta ataaccaggt ttgagggccg caggcccgaa      2400
     tactcttgaa aactgtgggc tggctttaat cctattccaa gcagagcagg ccgtattcat      2460
     gagttttcct tttccttcac cgttttttgt agttcacagt gatgattgaa racacgctta      2520
     ttttattgat aatacattca aattattctt gaacaaaatc tcagcctaag ttattcgtac      2580
     agtgtcggtc ctggagcaat gaatcaaagt ttaaagagat ttcactttac acagtaagag      2640
     cttcgaggcg aagcctcaaa cctgaatagt caagttttct aaacatatac cccactcctg      2700
     aaataatttc aargagatct cgaataaccc swtaacaggt tcgaggcgaa gccgagaacc      2760
     tgcgccagct accttgctaa taacttagag cgaattaacc ctatccccat tcccgaaggg      2820
     ctggcgggcc cataggcccg ctagtc                                           2846
//
ID   LYDIA_I     repbase;    DNA;    INV; 6054 BP.
XX
AC   AF177773;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   LYDIA_I is an internal portion of LYDIA, a gypsy-like endogenous
DE   retrovirus.
XX
KW   LTR Retrotransposon; Interspersed Repeat; endogenous retrovirus;
KW   LYDIA; LYDIA_I; LYDIA_LTR.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-6054
RA   Pfeifer A.T., Ring M., Grigliatti A.T.;
RT   "Identification and analysis of Lydia, a LTR retrotransposon from
RT   Lymantria dispar.";
RL   Unpublished.
XX
RN   [2]
RP   1-6054
RA   Pfeifer A.T., Ring M., Grigliatti A.T.;
RT   "LYDIA_I.";
RL   Direct Submission to Genbank (16-AUG-1999)Zoology, University of
RL   British Columbia,.
XX
DR   GenBank; AF177773; Positions     301    6354.
XX
SQ   Sequence 6054 BP; 2085 A; 1394 C; 988 G; 1586 T; 1 other;
     ggcgcagtcg gtaggatcct cgcgggccgg ttcgcgtcct tagagtcctt tcaaatcgat        60
     attcgcgtcg cgagtcgccc gggtggcttt caagcaccgt catcgaggtt ccagaatcta       120
     cggtccagca gcagttccag aggagagtca agacctcgac tcacggaaga gaaaccagaa       180
     tgaagtatat gtaagtacac ttgaattgtt ctcgtgttgc ttgctttctt tgtcctagtt       240
     atatccattc tccaaaattt tccatcgcga aaattcgtac cgggaacctg catctcggca       300
     ggctcgttgg aatacaatag atttaattag aaatttaggt agtagccctc cgcagagttc       360
     agaaaatatg gcttaaggac aggctaacgt agtagtaata acccatgacc cggacacgat       420
     ttttaaggta cttcgcctag tcccggattt cgatgggaac ccgaatattt taactagatt       480
     gattaatata tgcgatagaa tagttgtaca atatttaagt gatcagccag gaaacgaatt       540
     agcgaactta tgtcttttaa acggaatact aaataaaatt acgggatcag ccgctagcac       600
     tattaattcc aacggtattc cagacagctg gttaggtatt agaacagcct taataaataa       660
     cttttccgat cagcgtgacg aaactgctct ctatagtgac ctatctttag ccaaacaggg       720
     tacgaagaca cctcaagagt tttacgacca gtgccagaca ctattcagta ccataatgac       780
     ctatgtaact ttgcatgaac cgattagtac cacagtagaa gctaagagaa tattatataa       840
     aaaaattgct atgcagtcat tcgtgagagg cttacaacga accattagga tcgcggataa       900
     gatgtatgcg accagagact atagaaaaag cactcgaata tgttcaagag gagttgaatg       960
     taatatattt acaacaacgt aacgataccc cgaaatcggt taacacccct agaacgttca      1020
     actatgttcc accccctata aatttcaaca aaccacgtgt tcaaaacatc gttagtcatc      1080
     cccctaattg gccggcacca gtaggtttta aatcacacca acttccgccg caacccttta      1140
     aattcaaccc cctacagaac caacagttcc agcaacgtat ccctaaccgt acgcagcaaa      1200
     tatttcgcgc tcaaccaccc ggttataacc cacatagtaa cgtctttcga ctaccaccca      1260
     ggaacgttcc accacaaaat ctaggcccaa aacccatgag cggcatacag cattttacac      1320
     ctaagcctat attatcaggt catgattggc gtaaatcagg caatccacca ccaagtaatt      1380
     atttcaaacc gcgtgaaatg aacgtgaatg agtgcgcgta atacgacgac tcatattacc      1440
     cagagtattg ttacgaacac gaagatagct atttttacag taattattac aacgattaca      1500
     tcccatacgc tacagaagag tgcacctata atactactta ttatgatacg acaaatgata      1560
     ttcagattac cgaagatata gaaccacaac ctggtacaag ttcatcagac ccggattttc      1620
     agttggaccc ggtgtcaaaa agaccaaaat agaattaaat ctccaaactc agagacagct      1680
     accatatatt tctatttcag atccaccttt aaaattatta attgacacag gtgcaaacca      1740
     atcgtttatt agcccggaag cagtcgagtt atattttcca aactttccac taaattacga      1800
     tccatttgaa gtcaccgatg tgcacgccgt tagtagaaac gattactcca ttaccttacc      1860
     caggtttgct gaatttaacg accctaaccc ggttaaatta ttcgtatacc gttttcatga      1920
     ctatttcgac ggattgatag gattagatct attaaccaga tgggaggcca aaatagactt      1980
     aaaagaccgc aaattaatta cacaattcgc ctcgaaccca atacgcatgt acaattcttg      2040
     taatgtcaac ctatgcgagg acatcatacc accaaaatcg ccaaaattaa ttaaaattcc      2100
     cattaacacc cccgacggcg cagcattagt tagcgaacaa actatatgca attgcattat      2160
     tcacgaatgc cttactaacg taaaaaacaa tcgcggttac attgaaatag aaaactctac      2220
     acccaacgat ataatattgt ctctcgaccg acctgcacat gcagaattat ttaataccga      2280
     gtacactcgc accgaanaac cacactcacg cgtatcagaa gttatatcgc gtttgcgcac      2340
     cgaacaatta ggccccgaag aaaaagcgaa ccttaccacc ttatgttcta gctatgcgga      2400
     cgttttttac attgaaggag aaacacttac ttttacaaat aaaatcaaac atcgtataag      2460
     aacaaccgat gaagtccctg tttacacaaa aagctatcga taccccgttt atacaccgac      2520
     aagaagttag tgaccaaatt tcgaaaatgc ttaaccaagg tataataaga ccatcagact      2580
     cggcatggag ctcaccaatt tgggtcgtcc caaagaaaat ggacgcgtct ggtaagcaaa      2640
     aatggcgtct agttgtcgac tttcggaaac tcaacgacaa aactatagat gataaatatc      2700
     ccatccataa tattagtgac caacttgaca aattaggtcg ttgccaatat tttacaaccc      2760
     tttatttagc cagtggtttt taccaagtgg aaattgaccc cctcgatatt tcgaaaaccg      2820
     catttaacgt cgaacatggt catttcgaat ttcttcgaat gcccatggga cttaaaaact      2880
     cgccttccac ttttcagcga gttatggaca atgttctcgg agacctccag aataacatct      2940
     gcctaatcta tcttgatgga atagtagtct tcagcacttc tctccaagag cacatggtca      3000
     acctcgagga aggtattcca aagacttcga gagtctaatt tcaaaataca aatggacaag      3060
     tcagcatttc ttaagcttga aactgcttat ctcggacata tcatcagtgg agatggagta      3120
     aaacccaatc ccgacaaaat ttcggctatt gaaaattatc ctattcccaa aactcctaaa      3180
     gaaattaaac aatttttagg tcttattggc tattatcgaa aattcatacc agattttggt      3240
     aatttaacta agccacttac acagtgctta aagaaaggta aaacgattac gttggacccc      3300
     cagtacatta gttgtttcga gaaatgtaaa acactcttaa gtaatgatcc tattcttcaa      3360
     tatcctgaca tcgaaaaaga cttcagcctg acgaccgacg cttcaaacgt cgctattgga      3420
     gccgtgctat cccaaggacc aattggatct gataaacccg tatgttacgc ctcgcgaaca      3480
     ttaaacgata gtgaacttaa ctatagcacc atagaaaagg aacttctagc catagtttgg      3540
     gctactaagt attttcgccc atatctgttt ggacgaaaat ttaagataat aaccgaccat      3600
     aaaccactgc agtggatggt aaaccttaaa gaacctaatt caagattaac tagatggcgt      3660
     ttaaaactta gcgaatacga tttcaccgtg gtatataaaa aaggcagaca taacaccaac      3720
     gccgacgcct tatctcgtat agaaatccac aacgaagatc taaatagtat agtcgacgaa      3780
     ttatgttctc tcataccgaa ccccactgat gaaccgccca ctattgtaaa ctcttcaacc      3840
     gaaaccgcac acactagttt agaacatcct atattagaaa ttccaatcac cgatgaaccc      3900
     cttaataaat actataggca aattcatttc accatcgtaa atgacgtcaa aagaaaaccg      3960
     cacgtaacaa aacctttcga aactcacacg cgcatagcca ttcagctctc aaaatcaaac      4020
     ttagaaaacg acatcattaa tgcgattaaa gagtatgtta gtcctaaagt aaaaaccgcc      4080
     cttttaataa ctccacctct tgccatgtat tctattatcc ctgtaattca aaaaacgttc      4140
     agaagttctt cactaaacct cgtacttaca aaactagaaa tagaaaacat caaggattac      4200
     cttcgtcaac aggaaatcat tcgcaactat catgatggaa agacgaatca ccgtggaatc      4260
     acagaatgtt atctatctct atcacgaaaa tactattggc ccaaaatgaa agaccagatt      4320
     acaaaataca tcaatgaatg tattatctgc ggccaagcga aatacgacag gaaccctatc      4380
     aaacctcaat ttaacatcgt accacctgca acaaaaccac tcgaggtagt tcacatggac      4440
     ttattcactg tacacaacga aaaatatatc accttcgtag atgtattcac aaaatatgga      4500
     caggcgtacc atctcaatga tggcacagct gtaagcatat tacaagctct tcttaaattc      4560
     tgtacccatc acggagtacc attaactcta ataacggata acggaaccga atttacgaac      4620
     caactctttt cagaatttac gcggcttcac aaaataaacc atcaccgtat tttacctcac      4680
     cgaacgataa tgggaacata gaacgctttc attccacaat acttgaacat cttcgaattt      4740
     taaaattaca aaataaagat gaacctatag tctatctaat accatatgct ataatagctt      4800
     ataacagttc tatccacagt ttcacaaaat gtaggccgtt tgacttatta aatggacatt      4860
     ttgaccctag agatatatta gatatagatt ttacacatca tttactacaa caatatagcc      4920
     aaaatcataa ggcccagatg aacgaagttt ataaaattat aaacgattca tctttaacta      4980
     atagaaccgc tctcatagaa caaagaaata taaatcgtga gcccgaaata gaatacactc      5040
     cccaacagca agtcttcatt aaaaatccgt ttgctaacag tcaaaaagtt gcaccacgat      5100
     ttactcaaga caccgtctta gcagatttgc caatacacat ttacacctca aaaaaacgtg      5160
     gtcctgtagc caagtctaga ctgaaaagag gtcataaagt tccccaatcg ttaaatgatt      5220
     ctactgttac tgacccttcg cgagacaacg cttctcgaga caaatctttt agttatactt      5280
     agtaataaat aagtttagaa ataactagaa tagaaaatgg ttttactcat acatcgagta      5340
     tgcaccactc tagtatagat atcaatatgt tagaattaat gttaggtaag ctagaactca      5400
     tttataacct agatgagata ttaagagtag aattaaaata gtactacgaa gcaatcatcc      5460
     ccagtttaca cttctctgat aaattcatag taatggtttt taaattccct gtatttttaa      5520
     tatatccaga atagctataa cacccgacag gcctttctac cttcctatcc ttacattgca      5580
     atcaacacag gtacattcaa gctgtacatg gaggctgaat gcccgaaggt tgggagttgg      5640
     tatctctgta agaaacttcg catcagatac gcgtcagccc aaactacatc ccacagctca      5700
     ttataaaaca agctttgctc ataactcctg ccagaaccgt ctcatcagct actgaagccc      5760
     tggaataatt agacgaccgg cattatgccg tatcttttcc acattccacc aaactaatgg      5820
     acataccaag taacactgaa aaacaagtat cgttgtacca agacacgtag tcttgactca      5880
     acagatcacc gaagtctgca cagcatccag aacaaagtct gtacagcatc ctttcatcaa      5940
     aaggataacc acatgaccca catggaaata gcaaagaatc aggaagcccc agataatatt      6000
     ccagtgacat tttcactcaa cgttcgaaaa tggtcgcaga tctacgaggg gagg            6054
//
ID   LmeSINE1b   repbase;    DNA;    INV; 415 BP.
XX
AC   .
XX
DT   07-JUL-2006 (Rel. 11.06, Created)
DT   07-JUL-2006 (Rel. 11.06, Last updated, Version 1)
XX
DE   Coelacanth DeuSINE element - consensus.
XX
KW   SINE3; SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   DeuSINE; LmeSINE1b.
XX
OS   Metazoa
OC   Eukaryota.
XX
RN   [1]
RP   1-415
RA   Nishihara H., Smit A.F., Okada N.;
RT   "Functional noncoding sequences derived from SINEs in the
RT   mammalian genome.";
RL   Genome Res 16(7), 864-874 (2006).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 415 BP; 96 A; 98 C; 106 G; 112 T; 3 other;
     ggtggctcag taggtakcac tgttgcctct gagtcagaaa gtcgaaggtt cgaatcccac        60
     ctgaggaacc tggacatatt ccatctrcca acgccccagc atggtgtttg ggggcgctgt       120
     gctgctgaag gtgccttctt ttggatgaga cgttaaaccg aggtcctgtc tactttgtgg       180
     acattaaaga tcccatggca cttttcgaaa gagtaggggt gttaacccca gtgtcctggc       240
     cacaattccc ccadtaatga ctggaagctg ttgtgtggtg tgctggcact aaaatggttg       300
     cctcgttcca ccccagaggt ggctgcactt cagtggattg cacaatatct ctgtaaagcg       360
     ctttgagatc cttcgggatg aaaggcgcta tataaatcca aaattcattc attca            415
//
ID   TRANSIB1    repbase;    DNA;    INV; 1816 BP.
XX
AC   .
XX
DT   31-JUL-2000 (Rel. 4.2, Created)
DT   31-JUL-2000 (Rel. 4.2, Last updated, Version 1)
XX
DE   TRANSIB1 is a DNA transposon, a partial consensus sequence.
XX
KW   DNA transposon; transposase; TRANSIB family; TRANSIB1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1816
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB1.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB1 belongs to the TRANSIB family of DNA
CC   transposons. It has generated duplications of the CANTG target
CC   sites upon its integration into the genome. TRANSIB1 has 40-bp
CC   terminal inverted repeats and it encodes putative transposase
CC   which is not similar to any known transposases.
CC   There are ~20 copies of TRANSIB1 which are ~94% identical to the
CC   consensus sequence. Putatively, TRANSIB1 lost its activity
CC   several
CC   million years ago.
CC   Putative TRANSIB1 transposase:
CC   MKNLAKCNRTIEALKKKHSSWLSSTMMVVVDQNNNQVASDCLMGRPRLSYSDAGSRLKRKIATDLANIEE
CC   NNTSLLVHAASISAKKEKMGDTAFVLKQTISTSTASTEIRKKLIFSEPVPLTPIQALAFLIDSSLSKAKY
CC   NDMRALNKTQFSNIYPSYNKVREAKLACRPAGVHVTETFAQVSFQNLLNHTASRIILMHYSYPWIHRILY
CC   FQA.
XX
SQ   Sequence 1816 BP; 626 A; 308 C; 309 G; 571 T; 2 other;
     cantgcacac tgggccagat tccctttttt tttggcataa agtcaaaaaa ttttgtaaat        60
     tgtattttga atttaactat atattatgaa agagcataga ttagggacac caaaacgata       120
     tttaaaaaca tttaagttgc aacactgcat tttttatgcg atatcaaatt catatgtttg       180
     atcagctgtt tgttcaagca aaattggcgc gaaactttta ctcaactttg tgattctgtt       240
     aaaaatacac cacgtgtcca aatattttca aataaaatgg aatataaagg tcaaggtatg       300
     cttaatatag atataactta ctgatttaga attatgtgtt ccatgttgta attgttgttg       360
     tctttgttta cgtcttagtt taggcaaaat ctaaccaaag tgttcgtcta ttgtggagtg       420
     agaaatgatt tgtgccaact tgtgccaaaa actaataact gatgtgttta ctcaaaactg       480
     taattaaatt gatgttagta acgccttttg cctaaatttg cctatgctct ttatattttg       540
     ccgtttaaga caagtttgag attagccgat cggttctgct ggatgaatgg atcaaaggag       600
     atcgaaatga caaagcctta gttgactggg ttgttggcga atttaaatta aatgatatta       660
     ctattgacga gaaagctaaa atcgctaagc aaatcagaag ctttcaccta tatataatga       720
     aaaatctggc taaatgtaac cgtacaattg aagcattaaa aaaaaaacat tccagttggc       780
     tttcatccac gatgatggtt gtcgtggacc aaaacaacaa ccaagtcgct tcagactgtc       840
     taatgggacg acctcgactc tcttacagtg atgcaggatc acggctcaaa agaaaaatag       900
     caacggatct ggctaatatt gaagaaaata atacaagtct tcttgtccat gcagcatcaa       960
     tttcagccaa aaaggaaaaa atgggcgata ctgcttttgt attaaagcaa accatttcaa      1020
     cttcaactgc atccactgaa attagaaaga aattgatatt ctcagagcca gtaccgctca      1080
     caccaattca ggctcttgca tttttgattg acagctctct atccaaagca aaatacaacg      1140
     acatgagagc tttgaacaaa acacaattta gcaacattta tccatcgtat aataaagtca      1200
     gagaagctaa attagcgtgt agacctgcgg gagttcatgt gacagagacc tttgcccaag      1260
     tatctttcca aaatttgctg aatcatacgg ccagtcgaat tattcttatg cattattctt      1320
     atccatggat tcatcggatc ctttactttc aagcctaaat ataaacaaaa gatcgtctca      1380
     aaataaaaaa atcgctttgc cgaaagaagt catcaatctt ttagatgcac caaatgtaga      1440
     acatattaat aatgaacatt tttgggaagc gatgatagcg actcggattc ggatcacgat      1500
     gatccatttt ctatgcattt ggacgtagaa aattttgatt aatataatag tataattata      1560
     tgtatattaa atagatacat aagaaaaatt cagcttaaat ttattatatt aattaataaa      1620
     aagaaataat catgccaaat ctactcctta actttatatc ctaatatggg cggtatgggt      1680
     gggcgtggtc cgatttactt gaaatttcac gtacgtattt taaatgtcaa atgcaccaat      1740
     tctacaaaaa tgcagctctc tagctttatt atttgacttt atgccaaaaa aagggaatct      1800
     ggcccagtgt gcantg                                                      1816
//
ID   MARINER47B_CB repbase;    DNA;    INV; 1082 BP.
XX
AC   .
XX
DT   07-DEC-2004 (Rel. 9.11, Created)
DT   07-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; 3bp TSD; Cb000028;
KW   Cb000211; DNA; MARINER47B_CB; MARINER47_CB;
KW   mariner/Tc1 superfamily.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   219-1076
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-1082
RA   Pavlicek A., Jurka J.;
RT   "MARINER47_CB - a family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Direct Submission to Repbase Update (NOV-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are ~85-95% identical to the consensus.
CC   Contains ~14bp-long imperfect TIRs and is flanked by TNA target
CC   duplications from the C|TNA|G target motif. MARINER47B_CB is
CC   a subfamily of MARINER47_CB.
XX
SQ   Sequence 1082 BP; 332 A; 186 C; 196 G; 368 T; 0 other;
     caagggaagg ttttttagac aacggttgag aatttgctca aaatttgcat acttatagtt        60
     taagacatgc tctatacgat gacgaaaaaa tttttagccc gttctcactc ccaggccgaa       120
     aaactttgtc tgaaaatttg ggccgatttc ggtgcgctgg ggatttcggc ttccccttcc       180
     ctcctctacc aattccgcgt gagaggaaaa tatcggttgt gtggtgttgt ggtaagaggg       240
     tgactcatta ggattgacta tgctggttcg acccccactg tggtaaaact ttttttgcat       300
     tttttgaaac taatttttga ttccaagttt gcccccctag gcactatatg acactttttg       360
     attaatttca aaagttttca aagaaaaaaa gatttcatga gagtttgagg aaaaaataga       420
     taatggtctt ttcgaccggt tcttacatcc tcgtatcgtt aaaaacgaaa atttcagtct       480
     ctgaaagttg ctcaattttg ctctttttga ggtggagtac tgtcaaatcg atcacataca       540
     agattcgaac ctatttctat aggtttcagt taagttcaag cgatatttca gaaattagga       600
     actgtcaaag ttctaacaac aatcagattt tggagatttt ttgagcccaa agacaacatt       660
     gggctgaaaa aatttgtcag aatgctattt ttatcgtttc tgaataattg gaacgttttt       720
     tcgcactttt caaaaaattt tcaaaaaatc attttcaaag tgtggggacc ccatggtgat       780
     ttttttcaaa atttttcaaa aaaaattttt ttttgaaaat gtttaaaagt tactttagaa       840
     gatagaaaaa tgtccaaaaa tgagtttcgc actcaagcaa atcctgaaaa actaattttt       900
     aacctcgaaa aatgcatgtt tttggccaaa atttagtact aaaagcactt tcagaggcca       960
     tatttcggct ccttttgaga acgggctaaa aatttttttg gattcggatt cagcatgttc      1020
     gaaagtacct ttgtacaaat tttgagcaaa ttctcaaccg ttgtctgaaa aaccttccct      1080
     tg                                                                     1082
//
ID   DRE         repbase;    DNA;    INV; 6428 BP.
XX
AC   X57034;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   D.discoideum retrotransposon DRE.
XX
KW   LTR Retrotransposon; Interspersed Repeat; LTR;
KW   Repetitive sequence; long terminal repeats; retrotransposon dre;
KW   DRE.
XX
OS   Dictyostelium discoideum
OC   Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
XX
RN   [1]
RP   1-6428
RA   Marschalek R.;
RT   "DRE.";
RL   Direct Submission to Genbank (17-DEC-1990)R. Marschalek, INSTITUT
RL   F BIOCHEMIE DER MED. FAK., FAHRSTR 17, D 8520 ERLANGEN.
XX
RN   [2]
RP   1-6428
RA   Marschalek R., Hofmann J., Schumann G., Gosseringer R.,
RA   Dingermann T.;
RT   "Structure of DRE, a retrotransposable element which integrates
RT   with position specificity upstream of Dictyostelium discoideum
RT   tRNA genes.";
RL   Mol. Cell. Biol 12, 229-239 (1992).
XX
RN   [3]
RP   1-6428
RA   Marschalek R.;
RT   "DRE.";
RL   Direct Submission to Genbank (14-DEC-1990)Marschalek R., Institut
RL   fuer Biochemie der med. Fak., Fahrstrasse 17, D-8520 Erlangen..
XX
RN   [4]
RP   1-6428
RA   Hofmann J., Schumann G., Borschet G., Gosseringer R., Bach M.,
RA   Bertling M.W., Marschalek R., Dingermann T.;
RT   "Transfer RNA genes from Dictyostelium discoideum are frequently
RT   associated with repetitive elements and contain consensus boxes
RT   in their 5' and 3'-flanking regions.";
RL   J. Mol. Biol 222, 537-552 (1991).
XX
DR   GenBank; X57034; Positions       1    6428.
XX
SQ   Sequence 6428 BP; 3158 A; 1171 C; 736 G; 1363 T; 0 other;
     agatcgaaaa aaaacaaaca acaacaacaa tctctttttt tgattatttc atttttcata        60
     taaaaaagac ttaaaaaaca aataaataaa taaataaact atcttaaaaa gccatctttt       120
     tactttattg taatttatta tttgtttcgt tttgagaatt ttgcgtagca aaattttcaa       180
     aaaaaagcaa aaaataatca gatcgaaaaa aaacaaacaa caacaacaat ctcttttttt       240
     gattatttca tttttcatat aaaaaagact taaaaaaaaa aaaaaaaaaa aaaaaaaaaa       300
     aaaaaaaaaa cctgggaacc caagttaatc agaaaatttc cagattttta actttttaaa       360
     gaaaaatata aaaaatagaa agaaaataaa atgaaaatca caaacaacac cacaaatatt       420
     aagcaacaca aatgcctaca aaaaataagc gaaattgtgg ataaaactca attaaaaaaa       480
     aaacaattca aatacgtcat aaacatcaat cacgaaccag acgataaaat aaaaaaagat       540
     ttagaaaaaa gtttggacaa aaaagatgtt ttaatcaaaa gtaataatac attcaaaatt       600
     ctcacagaca gtattagtac agtaatctat tttgtaaata tgttcgatgc agaattaaaa       660
     ggacaattta taaccactct aagaccaaaa aatatgtata cggatttcga ttggtataaa       720
     tcactcacag aaatagaatg ggtaatagaa aatgaaggat gtaaactaat taaatctgaa       780
     attaaaggcg aaactctaat tatcaaaaca gtgaaaagag tcgtagaaga atatgacact       840
     atcattgaac tagacaatct aacattaatt ggacactcca acaaaggatg gagagatcaa       900
     acctcattac cagaaaatca agaagaaaac aaaaataaaa aacaatcaga tgaacaacaa       960
     ccaaaatcta catcagaaca aataccaaaa caaggaaaaa gaacaatcat tatcccacca      1020
     atcacctcct catctaatga taaaacattt atggccctag atgatacagc tcaaaaggta      1080
     atagatgcat cactagaaaa cgtagatgaa ctaacaagaa tagagaatga gatcaatacc      1140
     caatcgataa aaaatcaaga aattaaaaca aaatcagaaa aacctattga accaccatct      1200
     ccatacaata caccaataaa acaacacggc gaaacaaaga gactaacaac ggaagaaaaa      1260
     cttagagagg taaatgatat cttcgacttc accagcccaa acactgatgc aataagaaaa      1320
     atagaattcc cactttcaat cccttcaaat caatggttct tctcctctcc aataaaacat      1380
     atcatgagtt tcagcccaac ctatggtaca ccatcgaaaa ttatcgattc accaagtaaa      1440
     ttgttaaaca caccaaaaaa caaacaacaa gacaaaacaa acaggaccaa caaaacacca      1500
     gtcaaaccaa aattgggtga atatggacaa aaaagcataa aaacaaaaat ggatgaagat      1560
     atagacaact tcaacaagga aattctaaaa caaatcagta aatcaaaaaa ccccacaaac      1620
     acacaagacc aacaacacaa cgaacaaagt aaagatcagt tagaagacaa aataaaccag      1680
     aaacttcaaa aggtagataa aaatctaccc caaataaaac tataaagaaa aacacaataa      1740
     gaataggtgt ttggaacgtc caaggatcca acaccatcca atctgccagc ataataaaca      1800
     ccgtattaga caacaacaag ctggacgcag cacttctaac tgaaacaaat ataaaaacaa      1860
     ataaaattta ctcaataaat caacaatata aaaacaaaat aacacaccac gcaccaattg      1920
     ataaaacagg acaaggggtg tcacaaatca tcatcaacac ccaaataaaa acaacaacaa      1980
     aaacaataaa cgaaagaatt atatcttccg aatggatgat tgcaaaaaca cagatcaaat      2040
     gcacaaccat ttatgcccca gcaaagtcaa acgaaagaca tgaatggtat aaggaaaatc      2100
     tcacagaaga aatactacac agcgatatta taaccggaga cttcaatgta gactgttcag      2160
     tggataataa ccttaacaaa tatattaaaa caatcttcga cgaattcgaa tttacagaaa      2220
     ttaagaatgg aatcacattt ccaagaaaca aatcaaccat cgatagggtc tttgtctcaa      2280
     agaagatact ccatctaaac ccaatagtta ctactaagga aatcaaatta aaatctgatc      2340
     acaacatggt aatcattgaa ttaaaaatac cagaatacga gcaacaaaag aaaggagaaa      2400
     gactatggag acaaaaccta gaaactctca aaatgaattc aaccagcctc aaaattaata      2460
     aaacaattaa atactacaat aaaaaattcg aagagaacac cagcaaatgg tacaaattaa      2520
     acatttgcga acaatggttg aaactaaaag atgaaataaa gaaactgtca attaatatag      2580
     aaattagaga aagcaataaa accaaaaaca aactaaaaga actcgcagaa aaactcgaaa      2640
     cagccaaaga ttcaagagca atcttcctta aagaagagat caacaatatt ctaaaggaac      2700
     aagtaagaat aaaacaagca aaccaaacca acacccacat caacaacaaa gaaacaccat      2760
     caaaatactt aaccagaagg ttaaaagtcc aaagaaagac aaatgaaatc cctcaaattc      2820
     tagatccaag caacaattgt ttggtaacaa aacacgagga tatcctcgaa gtagcaagaa      2880
     gatattacga gaacctgtac cagaagagag aatgcaacga agacactcac cacgaactcc      2940
     taaaaacatt caataaaagg attgaacaaa agatattgga cgaaattaat caaccaatag      3000
     aaggatatga aatcagacta ggcattgaaa aaatacaaga aggaaaagca cctggtaaag      3060
     atggactcct tccaacattt tacaaaaacc acattaatga aattctacca ataatatcaa      3120
     aactatacaa tcacttctgg aacacaacaa tcccaaagga cttcaaacaa gggatattga      3180
     ttactatata taaaaacaaa ggagacccaa acaacctgga taattataga ccaataacac      3240
     ttctaaatgt cgattacaaa atctattcga aaataatcaa caataggatc ctgaagttat      3300
     taaacaaaat aatctcacca ttccaaactg gattcgtacc aagaagacta ctgcacgata      3360
     acatcatcac cttaaactca acaatagaaa taataaaacg agagattaac acaaaagagg      3420
     atatggaacc aatcataaca ttttatgatt ttgaaaaagc attcgattca atctcacata      3480
     acgccattct acgtactctt gcacatctaa aactaccact caaaatggtc ctcacaataa      3540
     tgaacttact caatgaatca gaaacatcag tgtacatcaa taactcatta tctaaaagct      3600
     ttacatcaaa aagaggaacc aaacaaggtg atcctatctc tcccactatc ttcgcattag      3660
     tggttgaatg catggcaact actataataa atgaccgctg catcaatggt gtaaccaaag      3720
     aaaccattaa aatactacag ttcgccgatg atacagcaac aatagcatac aactttatgg      3780
     accatttcct catgaatgaa tggatcaaga agttttgcca agcaaccagc gcaaaaataa      3840
     accaaaccaa atgctcgtgt atcactttca aatggaacac cagaacgcta tacaccgtca      3900
     taaaatcaaa cgaaaggtac ctcggctttg acttcaacaa taagggtatc aaatccaaaa      3960
     tcaatacaat ctcagacaac atcagagcta aactagtaac atggaactca acttcatcaa      4020
     cctatatggg cagactcata atggcaaaaa catatgcact atctcagtta acgttccaca      4080
     cttacatcaa caccacacca caacacaata gtattgaaaa taacatcgta aaattcgttt      4140
     tcaacacaaa atctaaaaac tctctttcac tacaaagaag acaaaacaac tatatcaatg      4200
     gtggcctaaa cttatggaac ctgaagacaa gagaactagc acagaaagca tggttattcg      4260
     aaagatacct ccaccaaaga gtaagtaaca ctcctagttc atatataaaa ctgtgggaag      4320
     aggaactcaa aaacaacaac aacaacaaaa caacaacaaa acaaaatcaa ctacaactac      4380
     actggcaatg caagcaagca tggacccaat taaaaactcc acaaaataaa caaacacact      4440
     acgaacacct cccaaaatta aaaaaaatat acgaggatat gatgacaact caatctcctg      4500
     aacacaacaa attcatacca actcctggcc aaaaagaaat aatgaccaaa attaatagca      4560
     aacaccttcc atttaaagaa atcaaaaaaa taataaacat gaaaggtaga gatctattat      4620
     ggagatacac actgaaagca ctaccaaaaa tatacaacat gccatgccaa cagtgtgggg      4680
     aagatgagac ctcagaacat atattcttca actgcaaagc ccacatcaaa aacacacaag      4740
     aaatcttcaa ctacacccta actaagtctg gacacaccac tcacacctgg aatgtgaaga      4800
     ttttaaacca tctacaaatt gcactagtag ccaatttaat agctattata ttcgataaaa      4860
     tctggcacaa aagaaataaa ctcattcacg atgaaaaaga aataataatt cacagacaac      4920
     aagtcatacg tgaactaatt aaaacacaaa gagctgcatg ggacaggaca caagcggtta      4980
     taaacaaaac attaagaatc aaatcaaaac aacggccaga agaacaaaat aaattagact      5040
     cactaatctc gctaaagcta ttacaattta gcagacaatg gaactcacct cttcacgcaa      5100
     tagaacttcc taaacatctc aaaaaataca ataattcact cagtactttc tataaataaa      5160
     taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaacc      5220
     tgggaaccca agttaatcag aaaatttcca gatttttaac tttttaaaga aaaatataaa      5280
     aaatagaaag aaaataaaat gaaaatcaca aacaacacca caaatattaa gcaacacaaa      5340
     tgcctacaaa aaataagcga aattgtggat aaaactcaat taaaaaaaaa acaattcaaa      5400
     tacgtcataa acatcaatca cgaaccagac gataaaataa aaaaagattt agaaaaaagt      5460
     ttggacaaaa aagatgtttt aatcaaaagt aataatacaa ttcaaaattc gaaacaaaaa      5520
     aaaaaaaaaa aaaaaaaaag taaactaacc cctcttttag agaccctgta aaaaaaaaaa      5580
     aaaaaataaa ataaaatgag atctagcatc tcaaggagaa gcaaataata attgcgttat      5640
     ccaattcaaa aaaaaaaaag ttgaataaga agagaaaaaa aacaaacaac aacaacaatc      5700
     tctttttttg attatttcat ttttcatata aaaaagactt aaaaaacaaa taaataaata      5760
     aataaactat cttaaaaagc catcttttta ctttattgta atttattatt tgtttcgttt      5820
     tgagaatttt gcgtagcaaa attttcaaaa aaaagcaaaa aataatcaga tcgaaaaaaa      5880
     acaaacaaca acaacaatct ctttttttga ttatttcatt tttcatataa aaaagactta      5940
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaacc tgggaaccta agttaatcag      6000
     aaaatttcca gatttttaac tttttaaaga aaaataaaaa aaatagaaag aaaataaaat      6060
     gaaaatcaca aacaacacca caaatattaa gcaacacaaa tgcctacaaa aaataagcga      6120
     aattgtggat aaaactcaat taaaaaaaaa acaattcaaa tacgtcataa acatcaatca      6180
     cgaaccagac gataaaataa aaaaagattt agaaaaaagt ttggacaaaa aagatgtttt      6240
     aatcaaaagt aataatacaa ttcaaaattc gaacaaaaaa aaaaaaaaaa aaaaaaaaaa      6300
     aaagtaaacc aacccctctt ttagagaccc tgtaaaaaaa aaaaaaaaaa taaaataaaa      6360
     taaaatgaga tctagcatct caaggagaag caaataataa ttgcgttatc caattcaaaa      6420
     aaaaaaaa                                                               6428
//
ID   RCA1        repbase;    DNA;    INV; 84 BP.
XX
AC   X61258;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   C.elegans repetitive DNA.
XX
KW   Repetitive DNA; RCA1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-84
RA   La Volpe A.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (16-AUG-1991)A. La Volpe, CNR
RL   International Institute of Genetics and Biophysic, Via Marconi
RL   10, 80125 Naples, ITALY.
XX
RN   [2]
RP   1-84
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence
RT   in Caenorhabditis elegans.";
RL   Unpublished.
XX
RN   [3]
RP   1-84
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226, 159-168 (1992).
XX
DR   GenBank; X61258; Positions     398     481.
XX
SQ   Sequence 84 BP; 36 A; 13 C; 12 G; 23 T; 0 other;
     gacgtcacag actacaaaga ctacatagac tacaaactat ggacagacga actgtatttt        60
     tttatataaa atataagtaa tgat                                               84
//
ID   Transib3_DP repbase;    DNA;    INV; 2783 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib3_DP is a family of autonomous DNA transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; transposase;
KW   Transib3_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2783
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology0-0 (2005)in press.
XX
CC   [1] (Consensus)
XX
CC   Transib3_DP is a family of autonomous DNA transposons that
CC   belongs to the Transib superfamily.
CC   Transib3_DP elements are characterized by the CGNCG traget site
CC   duplications and 15-bp terminal inverted repeats (1 mismatch).
CC   The consensus sequence encodes the 680-aa Transib3_DPp
CC   transposase (pos. 432-2474).
XX
FH   Key           Location/Qualifiers
FT   CDS           432..2471
FT                 /product="Transib3_DPp"
FT                 /translation="MAMKNTKLFEIFRNSSTSNEFVETVLNELNLVSDSPE
FT                 QHTSIRKKIMCIHFSIKNKWLTSHRKVESFNSKYASWLIGNSLLYDGPSTS
FT                 TGRAIGRPTKTLDKCSDYTRKRKLVDATCHIDTDHLSEALSIKYTNNKENK
FT                 KAHITKAVSKASPVRLDRIKKSILKPPKLQPKSYTDEEALSLFSDLGMSKE
FT                 KYSILRYSLQQHQVYVLPEYKHITDAKLMARPEENLVTVESAVVKLQDLVQ
FT                 HTTKRLIKSLPHHQIESLPQNLTLISKWGCDGSSGQSEYKQAISTDDKTIT
FT                 DSNMLMASLVPLWLKSDTSEYWRNPRPSSAHYCRPILFKYAKESSELIKST
FT                 VSDIKNQISNIRPSVHKVNEEKSISVNFEFFLTTDGKVLNELTNTKSTLKC
FT                 AFCKKKTQKEFKNLDDSIIEEENLEYDISPLHARIRCMEFILKLAYTIPRE
FT                 GESFDNSTPANEIQKTRKKMIQEKILDKLSLKVDCPKQGFGNTNDGNSSLI
FT                 EKNEITAEITGVDIDIIKRLGVILNILNCKEKINTRKFGEYASKTAELLLE
FT                 KYPEKKLTPTLHKILAHGQILIEHQSLPIGEMSEEAQETRNKDYKKYRNMN
FT                 TCKTSRIKQNQDLFNMLAASSDPYISSIRYVRSQIKSASSYSSEMISLLDI
FT                 PPTKQEVEDYFTETKKFNQLSKYTKNCFFLF"
XX
SQ   Sequence 2783 BP; 1033 A; 481 C; 494 G; 773 T; 2 other;
     cacagtggcg atttcgacga aaagaggtgg caaaagtcgg agattttttt tagcgctttg        60
     gatacaatga atacacgcat ctaatagaga attttccaga gctttttggn atctataccg       120
     attaaactgt cacaacctcg cacgaaaaac ggtcaaaaac ggctatcaca gctcttaaat       180
     cccatacaaa atcatatttt gaccgttttt cgtgcgaggt tgtggcaggt aaatcggtat       240
     agaagccaaa cggctttgta acctgctttt tattatgtca aagggtggta cctacatatg       300
     tgtatatatt gaattcattt ttagcgcagc tctatagtct tattttgact tttaaaggat       360
     tcagttgcgt ataagcaaac atcagtgaat ataattttta tatataattt aagaattgaa       420
     ttttcgttaa aatggctatg aaaaatacca agttgttcga gatatttaga aattcaagca       480
     cctcaaacga atttgtggaa actgttctta atgaattaaa tttagtatcg gatagcccag       540
     agcagcatac aagtataaga aagaaaatta tgtgtataca ttttagtatt aaaaataagt       600
     ggttgacctc acaccgtaag gtagaatcgt ttaatagcaa atacgcaagc tggctaattg       660
     gaaacagctt gctatatgat ggaccctcca cgtccacggg acgagcaata ggaagaccaa       720
     caaaaaccct ggataagtgt tcagattata ctagaaagcg aaaacttgta gatgcaacat       780
     gtcatataga tacggatcat ttatcggagg cactgtcaat taaatatacg aacaacaagg       840
     aaaacaaaaa ggcgcatata acaaaagctg tatctaaggc aagcccggtg agacttgaca       900
     ggataaagaa aagcatcctc aagccaccaa aattacaacc gaagtcgtat accgatgaag       960
     aggccttgtc gctgttttca gacttaggaa tgtctaaaga gaagtattca atacttcggt      1020
     attccttaca gcagcatcaa gtctatgttc ttcctgaata caaacatatt acagatgcca      1080
     aattgatggc aaggccggaa gaaaacttgg tgacggttga atcagcagta gtaaaacttc      1140
     aagacctggt gcaacatact acgaaacggc tcattaaaag cttacctcac catcaaattg      1200
     agagcctgcc acaaaatctc acactgatca gcaaatgggg ctgtgatgga tcttctgggc      1260
     aaagtgaata taagcaagca atatctacag acgataaaac tattacagat tctaacatgc      1320
     ttatggcttc tcttgtacca ctgtggctta agtcggatac atcggaatat tggagaaatc      1380
     ctcgaccttc gtctgctcat tattgccgtc ctatattatt caaatacgcc aaggaatctt      1440
     cggaactaat aaaatccact gtaagtgata ttaagaatca gatttcaaat ataagaccgt      1500
     ctgtacataa agtcaacgaa gaaaaatcca ttagtgtcaa ttttgaattt ttccttacta      1560
     ctgatggaaa agttcttaac gaacttacta atacaaaatc gaccttgaaa tgcgcatttt      1620
     gcaaaaaaaa aacacagaag gaatttaaaa atttggatga ttccataatt gaagaggaaa      1680
     atttagaata tgacatttcc ccattacatg caagaattag atgtatggag tttattttaa      1740
     agcttgcata taccattccg cgagaggggg aatcttttga caacagcacg ccagccaacg      1800
     aaatacaaaa gactaggaaa aaaatgattc aagaaaaaat cctagacaaa ctatcactga      1860
     aggtggactg ccccaaacaa ggatttggaa acacaaatga tggaaactct tcactcattg      1920
     agaaaaacga aattactgca gaaataactg gggtggatat tgacattatc aaaagattgg      1980
     gtgtcatttt aaatatttta aattgcaaag aaaaaataaa tacccgcaag tttggtgaat      2040
     atgcctcgaa gactgcagag ctgttactgg aaaaatatcc tgaaaagaag ctaactccca      2100
     cgcttcataa aattctggca catggtcaaa ttttaattga acatcagagc ctaccaattg      2160
     gagagatgtc agaggaagcc caggaaacga gaaacaaaga ttacaaaaaa tacaggaata      2220
     tgaatacgtg caagacatca cgaattaagc aaaaccaaga ccttttcaac atgttggcag      2280
     cctcttcaga tccatatatt tcatccatta gatatgtgag atcacaaatt aaatcggcaa      2340
     gcagttattc ttcagaaatg ataagtttat tagatattcc tcccactaaa caggaagtgg      2400
     aggattattt tacagaaaca aaaaaattca accaactttc naaatataca aaaaattgtt      2460
     ttttcttatt ttaaattttt ttaaattagg ttaagttgaa aattaaatca aaaataatat      2520
     tttatagtaa aaaacagcat taaaagtact ttatcgataa aaaaaaaaaa aatagagcat      2580
     tttacatagg aaaatatgca ccggcaacaa agttcaactt taacccatta ttgtgaagct      2640
     tttagacact gtagcacaat ttacttaagc agattaaatt ttgaaagctt tttctttcaa      2700
     atgcagtttg tttcatgaag atatctttat ttgttcagaa gttattaatt tagcaagctg      2760
     aaacggcgga attccccact gtg                                              2783
//
ID   DSAT        repbase;    DNA;    INV; 182 BP.
XX
AC   .
XX
DT   09-AUG-1999 (Rel. 4.07, Created)
DT   09-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   Drosophila tandemly repeated satellite DNA (a consensus).
XX
KW   SAT; Satellite; Simple Repeat; DSAT; Tandem repeat.
XX
OS   Drosophila
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae.
XX
RN   [1]
RA   Bachmann L.;
RT   "DSAT.";
RL   Direct Submission to Repbase Update (05-NOV-1991)L. Bachmann,
RL   Institut fuer Biologie, Lehrstuhl Fuer Populationsgenetik,
RL   Universitaet Tuebingen, Auf der Morgenstelle 28, D-7400
RL   Tuebingen, FRG.
XX
RN   [2]
RA   Bachmann L., Sperlich D.;
RT   "Gradual evolution of a specific satellite DNA family in
RT   Drosophila ambigua, D. tristis, and D. obscura.";
RL   Mol. Biol. Evol 10(3), 647-659 (1993).
XX
RN   [3]
RA   Watabe H., Bachmann L., Haring E., Sperlich D.;
RT   "Taxonomic and molecular studies on Drosophila sinobscura and D.
RT   hubeiensis, two sibling species of the D. obscura group.";
RL   J. Zool. Syst. Evol. Res0-0 (1997)In press.
XX
RN   [4]
RP   1-182
RA   Jurka J.;
RT   "DSAT.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [4] (Consensus)
XX
SQ   Sequence 182 BP; 54 A; 35 C; 44 G; 49 T; 0 other;
     ctgcagagtt agagtgaaac agggatattt actggcagat tacgttatag tggctatatc        60
     ctttatgtcc tgcaatccaa attgattgca aaagatcctg cacattctcc agaaggcatt       120
     gacacattca ggacgttgta cagatggcta ggaggcgtgg catgtcctga tccgataaga       180
     aa                                                                      182
//
ID   TRE3A       repbase;    DNA;    INV; 5243 BP.
XX
AC   AF134169;
XX
DT   13-AUG-1999 (Rel. 4.07, Created)
DT   13-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   non-LTR retrotransposon TRE3-A, complete sequence.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; ORF1; ORF2; TRE3A;
KW   endonuclease; reverse transcriptase.
XX
OS   Dictyostelium discoideum
OC   Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
XX
RN   [1]
RP   1-5243
RA   Szafranski K., Gloeckner G., Dingermann T., Noegel A.A.,
RA   Eichinger L., Rosenthal A., Winckler T.;
RT   "Non-LTR retrotransposons with unique integration preference
RT   downstream of Dictyostelium discoideum transfer RNA genes.";
RL   Unpublished.
XX
RN   [2]
RP   1-5243
RA   Szafranski K.;
RT   "TRE3A.";
RL   Direct Submission to Genbank (10-MAR-1999)Abt. Genomanalyse,
RL   Institut fuer Molekulare Biotechnologie, Beutenbergstrasse 11,
RL   D-07745 Jena 07745, Germany.
XX
DR   GenBank; AF134169; Positions       1    5243.
XX
CC   TRE3A is related to the previously reported DRE non-LTR
CC   retrotransposon.
CC   ORF1: 170-1423; ORF2: 1423-5127.
XX
SQ   Sequence 5243 BP; 2204 A; 1273 C; 671 G; 1095 T; 0 other;
     aaaaaccgta ccgcgatcaa gaggatacaa gatacacgtg aaaagtaatt catccttttc        60
     tatccttaat ctcggtcaat tttaaccaat ctttcaaaaa aaatcaccaa tccaccacga       120
     tctacagatc taacttacca aatcgccgat tcaaaggaat cccatcgaga tgaattccta       180
     cgcagacgcg gctaaaatgg ccaacccctc cacccatatg gacgaggcat cagagaactt       240
     cattaaggaa ttctccacaa aaacagcaga gataaaggag acctacccca aattatcaat       300
     aggcctcaaa gacatctcca aatactgcga gaccatattg aacatgactg ctctctcaac       360
     ctacgagaaa aacaacggat tctacccaat tacactcgaa ttccccaaaa tggatctcat       420
     ggggttagaa gaaatgagaa aaacactctc aaactacgat atcccaatcg acaagatata       480
     cataggcaaa ggaactagaa aaacgatcca cctgatgatt aaaaacgaac aatctctcct       540
     aaatatcatt agagatagaa gcaaattggg aaccttcatc acctccagta gagactacca       600
     cgtcctcaca ggaagagtaa gaattccaag agaaaaggca ggaatagtgg acgccctcat       660
     caaaactgcc tttgcagaag aaatacccta tgcaatatac catactatat actccaccga       720
     ccacctccta gtattcggtc taatagaatg caaaataggc gatcaaatga aatctggcca       780
     acacaataca gaaatcgcca actttaccat cagaacggcc accaaaacct actcctcaca       840
     aaagaaaaat aagaaagtag agtcaaacaa cacggaagaa ccattagaag atgagatgac       900
     agatgatcct cccaacatcc aaaacaggat agcaatcaaa tcctctcaac caaaaccaca       960
     acaacaaaca aacaacccag caaacaataa gtctgataaa caatcaaccc aagagaaaaa      1020
     agcccaatca aaaaagtcct ctcaacctct tccccccaaa aaccaagcag aatctcaatc      1080
     tgtcaaaccc accacaacca ctaccacaac atccaacgcc atccaaaaag acaatgccaa      1140
     caaaacgagc actaacatcc attcatcctc ggaaaacaga gagaagacac caaacatccc      1200
     tccatcacat aaacgcaaga acgaggaaat ccactcaaac aacgaggtca cccaactctc      1260
     accaacaata aacagaagca acccttacat cccatccacc cctaagacac ctgtcaaaaa      1320
     agaaaggaaa ggaatcattg agagcttcat agagagtatc tacccttcac catccaaacc      1380
     gcagctatac gactcccaag aggagatcga tatcatctca taatggtagt aatcaaaatc      1440
     aaccaatgga atgtcagagg ttggggcact gacacctcct tcaaaaacaa aacagacttt      1500
     atcaaatccc aatccccccc aaactcattg gcactaacca tagtcaatga actcaacgcc      1560
     gacgcaacac aagcacacca gctattccct ggctccatca ttagcgcaac caacagaggc      1620
     aacggaatag gaatactaaa ccacaacaac caaaacataa aactctcacc aatattcata      1680
     atagaaggta gactaataat atcagacatt ctaataaaag ataccacaac gagaatcttg      1740
     gccatatacg ccccggccca acctgataaa agaaaaacac tagcttcaac actaaacaaa      1800
     cacttcaaca accaatacca caacctaacg tctaacccta aaaaaaacat cgacatcata      1860
     gcaggtgact tcaattgttt agacttcaat gacaatcaca catcaaatga cgaccaaggc      1920
     aacttgacaa cacaatcccc agatgagatg gccacagtaa tcgaagccat cagaatttca      1980
     aataacctaa tggatatgga ccaactaaat aaaagaccca ccttctcaag aacgatacac      2040
     aacacaaaca ataacctcac aagaatcttg gaaaggagac tagacagaat ataccttaac      2100
     aatagcataa tcaactacag ccaattatac ttaaggaacc taatcccccc aaaaattaac      2160
     gacatacctc tatcagatca caacttccta tcaaccacct tcactctacc caacatacag      2220
     atgaacaagc gcagatggag attaaaaaaa tcctcaatcc tctcaagcat aatgcttaag      2280
     aaaatagact tcctacttaa cgattattca agggagctgt catccaacca taactctatt      2340
     tccttctctc aactcaacag cttactaaac aaaataaaac aactatacac agaatttcaa      2400
     aaacaaaatg actacaacaa taaggcaaac atcaaaaatc taatctccct actagagaca      2460
     gaatttaaag accaagcctt cgcaaccctt tcagcaataa atgaatctaa aaaaagagaa      2520
     gaacaactta aacaagaatt gaacaactat tgcgaagaaa cctcactcaa gtacatctcc      2580
     gcgagaatca agaaaagaca caatgatttc accatcaacg cagtaaaaga tgcacaaggt      2640
     agaacaatca acaaacagga attgatcgaa gaagaatacg taaaatatta ctcaaatctt      2700
     tatgactaca aagaagatga cccaccatct cattatgaaa tgttggaaaa ttggacagtg      2760
     accagggact caacatggga caaccttgaa aatgaattca catcacaaga gatcctagaa      2820
     gtaataaaac aattgaaccc acacaaatct ccaggcccag atggaattcc aaacttattc      2880
     tacataacac acaaagaaaa actagctcca atactggcct cagcattcaa cgacactcta      2940
     agaaatcctc atctaattag caaaaattac aaagaaggcc tcattatcac gatacctaaa      3000
     aagggagacc ccgaactaat caaaaacaga agaccaatta cactggctaa ctgtatatat      3060
     aaaatccact caaaactaat aaacaataga ataatcccaa tactaacgaa agtgatcaac      3120
     cacaatcaaa aaggtttcgt accaggcaga ttcattatag ataatatcat atcaatgaac      3180
     gaattaatca actattgtaa tgataaaaga attaacggaa taattacact atatgatttc      3240
     gaaaaagctt ttgactcgat ctcacacggt tcaatactca gatcactaca acacatcaac      3300
     attccaacca atataatcaa cctgataatg aatctactca ccaaatctga agcaagaatt      3360
     gaaattaatg gtagaactac tatacccttt gagatcaaaa gaggagttaa acaaggagat      3420
     ccactatcac ccaccctgtt cgtccttgta atagaggctt tagctagaaa aattttacaa      3480
     gatgaccgaa ttactggcct tcctctaaac aacagcaacc acagagagaa attccaaagc      3540
     tttgcagacg actcggcttc aatggtccca gactctcaac aacttgaatt agtactacaa      3600
     cacttcaatt cattttgcaa agccacttcc tcaaaactaa acatcgacaa atcttcatca      3660
     attcttatag gcaacccaga caataccaac caaagaattc caatatctac aaatccagaa      3720
     agatacttgg gatacttctt cacaggcaaa gggataacaa gaaaaatgcc agaaatatta      3780
     aacacaataa gatcatcctt agtactatgg aaaaccactg actcaacaat caaaaccaaa      3840
     accaacatcc tcaaagcatt cgcactctct aaattaacct actattcata tgtagagaac      3900
     tttaaggaag aggaattaaa ccaaatcaat aaattagtcg aatggttttt atcggcacca      3960
     aacaacaaaa atgctagtgg atttcaagtt attaatttaa tgagaaccaa aagagcaaga      4020
     tacccactaa aagtaggggg ctggaacatt tggaatatag aattgagaca actggcgcag      4080
     aaactttgga tcataaacca gttcatccta gcactagaaa ccaaacaaac aaactcatct      4140
     catcacaaaa gctgggaata tcagatccaa aaaaacaaat tcacatccag atacctaaaa      4200
     gaaaacttag acgaatggaa caaaataaga ataaaaaaag caatcttcaa caataatctc      4260
     acatccataa aaaacgaaaa tggacaacca ctttcactgg cagaatggta taccacaatt      4320
     caagaccaaa atccaaccat ccctaaaacg gaattccaat catctctaaa cttaagaggc      4380
     tacagctata atcaactctt caacaacata ctgaagataa aagaccctaa aacaagagac      4440
     acaatgttta gattccatgc cagatgcctt ccaataaact accttcacaa caaacaatgc      4500
     ccactctgca aagaagatat gagcaaagac ccatacggtc acctgttctt ctcatgcaag      4560
     aaaacaaaac aattcataaa aataaataaa ctcaaaaatt tcatctatat taccacaggc      4620
     aaaggtaaaa actggcacca tacaagaatt aggcaaaata acaatttcat taatagaata      4680
     actccaaaat tatcaccgac agccaaaaaa gatcaagaag tgaatgcaga ttacgccaac      4740
     cacagattcc acaaagaata ctttgaatgg aactataaag caatagacta tgatctaacc      4800
     agatcattcg catatagaaa cctaatggcc cttatcctcc acaacatttg gatttggatt      4860
     tgcaatcaaa tatacagtga agatccttta acagatgaat cactatcata cagctccctt      4920
     ctaaagaaat ggcacaaatt ggccactcta gaatacatca aaaaagcaaa agatctgaaa      4980
     aacttatcag caaaagacca taataacttc aaagatccta agatccttct cacttcaacg      5040
     atcaagctaa gaaaaacaac agctaattac tattgtattc cagaatcatc tctcccaaat      5100
     attatatctt ttgatcaatt catatgatta aaataaccct tcagcttaaa tgataagcct      5160
     ttaaataaat attaaataaa actcgtatta acacagatgg acatatatca atcttgttaa      5220
     tccaatatta aaaaaaaaaa aaa                                              5243
//
ID   LIRP1       repbase;    DNA;    INV; 218 BP.
XX
AC   L42476;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Leishmania infantum DNA repeat.
XX
KW   LIRP1; Repetitive element.
XX
OS   Leishmania infantum
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-218
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42476; Positions       1     218.
XX
SQ   Sequence 218 BP; 56 A; 70 C; 64 G; 28 T; 0 other;
     gcaagaatca agaggcggtg tcacagagat gggcgaaggg ggacggcggg agcggcaaag        60
     agagcgcggg cacacagcga cgtccgtgga gagaaaaaaa gagagagaca cacgcgtatt       120
     cccttctgct aatgtgtacc cgcctctctg ccacagatca cgaggtcagc tccactccac       180
     cctaacgcct cccccgcgca gccctgtcac acgctccc                               218
//
ID   CERP5       repbase;    DNA;    INV; 792 BP.
XX
AC   .
XX
DT   28-JUL-1999 (Rel. 3.5, Created)
DT   28-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   C. elegans repetitive DNA (a consensus).
XX
KW   Repetitive DNA; CERP5 repeat; CERP5.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-792
RA   Jurka J.;
RT   "CERP5.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [1] (Consensus)
XX
CC   Nearly perfect palindrom.
XX
SQ   Sequence 792 BP; 253 A; 143 C; 144 G; 249 T; 3 other;
     cactgcaact ttttcctcac gagggacgag gaaaagtggt ttctaggcca tggccgaggg        60
     gccgacaagt ttcagcggcc atttatcttg ctttgttttc cgcctgtttt cttttgtttt       120
     tcacagattt ttcccgtttt ttcttattaa aactgataaa taaatatttt ttgcagatgc       180
     taaaacaatt tccaagtaaa aaaattatgt attcagtsgg caagcagcgg tgaaagtggt       240
     caatgtaata tgatggatta cgggaataca aaacctaaac tttttctgaa acatgataca       300
     tatgctgctt agatgctgaa actacctgat tttcataacg agaccgctga aaaagttttg       360
     agattttcaa aattcaactt tttgtgtgaa aaagtcgaga ttttcacaya aaaagttgaa       420
     ttttgaaaat ctcaaaactt tttcagcggt ctcgttatga aaatcnggta gtttcagcat       480
     ctaagcagca tatgtatcat gtttcagaaa aagtttaggt tttgtattcc cgtaatccat       540
     catattacat tgaccacttt caccgctact tgccgactga atacacaatt ttttcacttg       600
     gaaattgttt tagcatctgc aaaaaatatt tatttatcag ttttaataag aaaaaacgga       660
     aaaaatctgt gaaaaacgaa agaaaacagg cggaaaacaa agcaagataa atggccgctg       720
     aaacttgtcg gcccctcggc catggcctag aaaccacttt tcctcgtccc tcgtgaggaa       780
     aaagttgcag tg                                                           792
//
ID   HELITRONY1A_CE repbase;    DNA;    INV; 3084 BP.
XX
AC   .
XX
DT   26-FEB-2001 (Rel. 4.2, Created)
DT   26-FEB-2001 (Rel. 4.2, Last updated, Version 1)
XX
DE   HELITRONY1A_CE is a non-autonomous DNA transposon - a consensus.
XX
KW   Non-autonomous DNA transposon; HELITRON superfamily; RCA1; RCC9;
KW   RCD1; RC35; HELICOPY1; HELITRONY1_CE; HELITRONY1A_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3084
RA   V V., Jurka J.;
RT   "HELITRONY1A_CE.";
RL   Direct Submission to Repbase Update (FEB-2001).
XX
CC   [1] (Consensus)
XX
CC   There are about 50 copies of HELITRONY1A_CE in the C.elegans
CC   genome.
CC   They are ~95% identical to the consensus sequence. There are
CC   several
CC   minor subfamilies of HELITRONY1A_CE in the genome. HELITRONY1A_CE
CC   copies harbor one half of a PALTA3_CE-like DNA transposon
CC   (positions
CC   2890-2715) inserted into an ancestor of HELITRONY1A_CE. About 20
CC   ancestral copies, free of the PALTA3_CE-like insertion, are
CC   present
CC   in the genome.
XX
SQ   Sequence 3084 BP; 1063 A; 388 C; 655 G; 978 T; 0 other;
     tcattactta tatataaaaa aatacagttc gtctgtccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgacgtcac gcccaaagtc agtgagagtt gtgggcgggg cacccttcgt       120
     ggtgagaccc atcgtggtga gacccttcgt ggtgagaccc atcgtggtga gacccttcgt       180
     ggtgagaccc atcgtggtga gacccatcgt ggtgagaccc ttcgtggtga gacccttcgt       240
     ggtgagaccc aaaattttgg cgggaaattc aaattttctg tgaaaaacat tttggcggga       300
     aattcaaatt ttctgtgaaa aattttttgg cgggaattca aattttctgt gaaaattttt       360
     tggcgggaaa ttcaaatttt ctgtgaaaaa aattttggcg ggaaattcaa attttctgtg       420
     aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa cattttggcg ggaaattcaa       480
     attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa tttttggcgg       540
     gaaattcaaa ttttcagtga aaaaaatttt ggcgggaaat tcaaattttc tgtgaaaaaa       600
     attttggcgg gaaattcaaa ttttctgtga aaaaattttt ggcgggaaat tcaaattttc       660
     agtgaaaaaa attttggcgg gaaattcaaa ttttcagtga aaaaattttt ggcgggaaat       720
     tcaaattttc tgcgaaaaaa atttttggcg ggaaattcaa attttctgtg aaaaaaattt       780
     tggcgggaaa ttcaaatttt cagtgaaaaa attttggcgg gaaattcaaa ttttcagtga       840
     aaaaaatttt ggcgggaaat tcaaattttc agtgaaaaaa ttttggcggg aaattcaaat       900
     tttcagtgaa aaaattttgg cgggaaattc aaattttcag tggaaaaaat tttggcggga       960
     aattcaaatt ttcagtgaaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa      1020
     ttttggcggg aaattcaaat tttcagtgaa aaaattttgg cgggaaattc aaattttcag      1080
     tgaaaaaatt ttggcgggaa attcaaattt tcagtgaaaa aaattttggc gggaaattca      1140
     aattttcagt gaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa attttggcgg      1200
     gaaattcaaa ttttcagtga aaaaaatttt ggcgggaaat tcaaattttc agtgaaaaaa      1260
     atttttggcg ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt      1320
     cagtgaaaaa aattttggcg ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa      1380
     ttcaaatttt cagtgaaaaa aattttggcg ggaaattcaa attttcagtg aaaaaaattt      1440
     tggcgggaaa ttcaaatttt cagtgaaaaa aattttggcg ggaaattcaa attttcagtg      1500
     aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa aattttggcg ggaaattcaa      1560
     attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa aattttggcg      1620
     ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa      1680
     aattttggcg ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt      1740
     cagtgaaaaa attttggcgg gaaattcaaa ttttcagtga aaaaaatttt ggcgggaaat      1800
     tcaaattttc agtgaaaaaa attttggcgg gaaattcaaa ttttcagtga aaaaaatttt      1860
     ggcgggaaat tcaaattttc agtgaaaaaa attttggcgg gaaattcaaa ttttctgtga      1920
     aaaaaatttt tggagggaaa ttcaaatttt ctgagaaaaa gattttggcg ggaatttcaa      1980
     ttttggtttt ggaatcatct ggaaaattcc agaaaattct ataatgttct agaactttct      2040
     ggaaaattcg agaaaattct ggaatgttcc agaactttct ggaaagttcc agaaccttct      2100
     ggaaagttcc agaaccttct ggaaaattcg aaaaaaattc tggaatattc gtggtgagac      2160
     ccataaattt tggccgaaaa ctcaaaattt ctgagaaaaa atttttggcg ggaaattcaa      2220
     attttctgag aaactttttg ttagcttaag taccacctgg aactggcgag acccatcgtg      2280
     gtgggaccct taaaaatatg ggcgggaact tcaaaattta tgagaaaaga aattttggcg      2340
     ggaattcaaa tttccaagaa aaattttggc gggaaattca aattttctga gaaaaagatt      2400
     ttgacgggaa attcaaattt tctgaggaaa acatttggcg ggaaattcaa attttggttc      2460
     tggaatcaat tttttgtttc agcaccttct ggaagtttca agaaaattct agaatgttct      2520
     agaatcatct ggaaaattca aaaaagttct gaaatgctct acaacctcct ataactgtag      2580
     gagtttttat ttgtttcgtc acatctatat tcaaagaact tactattagt agttaattat      2640
     tcagacttct ccagttaagg aaagttatta acttattgaa aaaactgtaa ctctgtggaa      2700
     ttttttcggg ggagggggac agctcgccac gccaacagtg agaaaaatag tgtggtgcgc      2760
     ggacctcgaa tgatgtcggc ggctgatatt acctggggta ccgctttttg ccttttcccc      2820
     gtgagtgaac gagaaaaagg cggggactat tttggcgtac acgcaacgca gttttataat      2880
     tttgagtgta gaaaaatcag aacattctaa ctgtctcttt gaattttctg aatcgaatac      2940
     catggaagaa gaaaatgcga tttaatcgat gaagtttcaa cttttttaat gatacatttt      3000
     tgaatgatta aaaggacatc tatgtgttat acattttaaa ctccgccagt cgttggccgc      3060
     gccggaggcg cggtcatcgg ctgg                                             3084
//
ID   HELICOP1    repbase;    DNA;    INV; 8486 BP.
XX
AC   .
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOP1 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; helicase; HELICOP superfamily; HELICOP1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-8486
RA   Kapitonov V.V., Jurka J.;
RT   "HELICOP1.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
CC   [1] (Consensus)
XX
CC   HELICOP1 is a DNA transposon; it encodes a DNA helicase-like
CC   1466-aa protein which is putatively involved in proliferation
CC   of HELICOP1 copies. There are several copies of HELICOP1 in the
CC   genome; they are ~99% identical to the consensus sequence.
CC   Approximately 2% of the C. elegans genome belongs to molecular
CC   fossils of nonautonomous elements transposed recently (<10 Myrs)
CC   by autonomous HELICOP1-like elements. HELICOPY1 and HELICOPY2
CC   are examples of these nonautonomous elements. Minisatellite-
CC   like repeats RCA1, RCD1, RC35, RC123, RCC9, reported previously
CC   in the literature (Naclerio,G. et al., 1992, J. Mol. Biol. 226,
CC   159-168) are portions of HELICOP-like transposons
CC   (Kapitonov,V.V).
CC   The HELICOP1 protein is encoded by 9 putative exons and its
CC   CDS can be defined as:
CC   1930-2087; 2135-2412; 2533-3428, 3476-3799, 3850-4520, 4581-5207;
CC   5254-5521; 5574-5762; 5814-6803.
CC   The HELICOP1 protein:
CC   MDNELTSRPDSIMDTEPTTLPDSAMDTKPTNLPDFPSTSQEPVSRRTRSRTLSDNSNAVW
CC   KRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKRVWMKKKRNEVAKTHDT
CC   SSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELRH
CC   LLLDDSSHARNFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDP
CC   GQRPAFGQIYILDTDQATDERLGNPANADCDPAVMAELSSLLLRTNPYAQAYKMMAEVEE
CC   KENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLPQANEVAVVFVGEDDDVPTTRSLAVHP
CC   RGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHPDLEKRPSEKKQGRITQKMYYSYLLMER
CC   SGVFNPLHHGRALFQQFAVDSWVKIEQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPG
CC   RRIVLPSSFPGSPRAMVQNFQDAMAIVSKFGKPDIFLTFTCNPAWTEISENLGPRQSASD
CC   RPDLIARVFKLKVDALFDDLLNRDILGHVAAYISVFEWQKRGLPHVHMLLTMAENSKPRT
CC   SEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQNPHSPCMVDGHCSKRYPKDFHPS
CC   TTLNVDGYPGYRRRDDGRYVEYGTQHLDNRRVVPYNKWLLLRYNAHMNVEICGFIEAVKY
CC   LFKYVYKGHDRAALNIIQNVRGDGNVVDEIREHLDARYVCAPEAIHHILGFKLEKKASVT
CC   TQQLESSSQTDTTLTAWFKINQKSKDIAESGNIPSTFVDSRQFFYMDMPTHFTFVKKDGW
CC   KVRGRGTRQIGRMYTVPPYETERYALRILLLNIKGATSFEDLRTVLDENNVPVVYATYVE
CC   AAKAQGLLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILFNEVHDLNALWDAVKWDLSED
CC   FRHAGAGKEEAEALAYFDIESRLQRVGKRFDVTKPSINPPPIDLDTVNPAQCASEGNRLL
CC   ATLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGKTYLYITLYNICVGRGLKVACTAW
CC   TGIAANLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAENDVFIWDEASMVPKTAL
CC   DTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLWTEFQIL
CC   HLISNMRVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVIDPTTS
CC   DPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSP
CC   SSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTII
CC   PRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALS
CC   RVRTKEGLIVKSSSNIVTNIVFNEVL.
XX
SQ   Sequence 8486 BP; 2477 A; 1919 C; 1648 G; 2442 T; 0 other;
     atcattactt atatataaaa aaatagtgtg ggtctgtcca tagtttgtag tctatgtagt        60
     ctttgtagtc tgtgacgtca cccctaaagt cactgagagt tgtgggcggg gccagtcacc       120
     cttcgtggcg agacccatcg ttgcgagacc cttcgtggcg agacccatcg tggcgagacc       180
     catcgtggcg agacccatcg tggcgagacc catacatttt ggcgggaatt taaattttct       240
     ttgaaatttt tcggcgggaa ttcaaatttt ctgtgaaaat ttttggcggt agctcaaatt       300
     ttctgaaaca tttttggcgg gaattcaaaa tttctctgaa aatttttggc gggaatttaa       360
     attttcttta aaattttttg gcgggaattc aaattttctg tgaaaaattt tggcgggaat       420
     tcaaattttc tgaaaaattt ttggcgggaa ttcaaatttt ctctgaaaaa ttttggcggg       480
     aatttaaatt tccttcaaaa ttttttggcg ggaattcaaa ttttctgaaa aatttttggc       540
     gggaattcaa attttctctg aaaaattttg gcgggaattt aaatttcctt caaaattttt       600
     tggcgggaat tcaaattttc tttgaaaatt tttggcgtga attcaaattt tctgaaacat       660
     ttttggcggg aattcaaatt ttctctgaaa atttttggcg ggaattcaaa ttttctttaa       720
     aattttttgg cgggaattca aattttctgt gaaaaatttt ggcgggaatt caaattttct       780
     gaaaaatttt tggcgggaat tcaaattttc tctgaaaatt tttggcggga atttaaattt       840
     tctttaaaat tttttggcgg gaattcaaat tttctgtgaa aatttttggc gggaattcaa       900
     attttctgaa aaatttttgg cgggaattca aattttctct gaaaattttt ggcgggaatt       960
     taaattttct ttacaatttt ttggcgggaa ttcaaatttt ctgaaaaatt tttggcggga      1020
     attcaaattt tcagtgaaaa attatggcgg gaaattcaaa tttttagaga aattttgtcg      1080
     gagtagtcaa atttaacttt gtttgacaga aaaaaaaagt atgaagggga agatagtttg      1140
     aaccacagaa ggttcacacc aaattcccgc acacaaccaa tgcgacatac cggcacattt      1200
     gtttagaatt taataaacct atagaagagg aaaacttcat gcaataaact tcgagaatct      1260
     tctagaaatt tcgaaaaact tctagatatc tcggattacg taacacttga cgacgtcaca      1320
     catgatgagg acattaagta aacgtcacag gctgaaccca atataatttt cagaaaattc      1380
     tggaaccttc tagaattttg gagaaacttc cagaaaattc tgatgacgtc acaatcactg      1440
     gcgtaacaaa aaataagtca cagattatga cgtcacatat gatgacacct atatagtctc      1500
     acattcggaa aaaaataggt gatgacgcca aatatatcag cgtcacagaa tgtgacgtca      1560
     taggctccgc ccattacagt aaaagaaact tctggaatct tccagaagtt gcagaaaaag      1620
     aagagaatgt tccaataacg tcacaaaaga tgacgtcact gataaagaca tcacaggaac      1680
     tacccattaa tataatcaag aagattctac aaccatctag aaacttctgg atttttcaat      1740
     gtagtgtgca aaatttaaat tttgactatt tcattgtgca atttttaatt tatattatta      1800
     caagtttaaa ctatattaaa tctgtccttc taaaacccaa ttcgtttcaa gacccaaaac      1860
     ttctagaatc ttccaaaaaa attctatata aggagaagaa aattatcatt ttctcattat      1920
     taatcaacaa tggataacga gctaacaagt cgacccgatt caataatgga tacggaacca      1980
     acaactctac ccgattcagc aatggatacc aaaccaacaa acctgcctga tttcccttct      2040
     acatcccaag aacccgtctc taggaggaca cgttccagaa cattaaggta aggatcttga      2100
     atgctcgtgg aattttacca ataagcagtt ttagtgacaa ctcaaatgct gtatggaaga      2160
     gagaacgtcg ttcaagagaa acttcgcaag aatcagaatc aagactcagg atggattggg      2220
     aaagaaaaaa ggaaaaacga gcttcaatgt cagaagagga aaaggctgag atgaaatata      2280
     aaaaaagagt atggatgaag aaaaaaagaa atgaagtagc aaaaacacac gatacgtcat      2340
     ctgttgccaa tcccaactac cttggaagca tgagatgtgt gtgcaagaac tgcaatgcca      2400
     gattctttca aggtatacat tttttcaaag tttagtgaac ttctacttct tatttccatt      2460
     ctgagtttca gattggtttt ttttcataac taataacata tactagcatc atacagaaat      2520
     ttaatgtttc aggagaggtg tcctcatcca acgatcatat caatatgtgt tgctacttcg      2580
     gattaacaac cacacttcaa gatcgattct ccaactaccc agatgaacta cgacatcttc      2640
     tcctcgatga ttcttctcac gcccgtaact tccagaagaa catccgacag tttaattcat      2700
     cgttcgcaat ggcatcgatg ggtgcacaac ttgatgttcc gagaggccgc ggcccatact      2760
     gcttcaaaat ccacggtcaa gtttaccatt ttgcgggacc acttcacccg gatccaggcc      2820
     agagaccagc atttggacag atctacatcc tggacactga tcaagcaaca gacgagaggc      2880
     ttggaaatcc tgccaatgcc gattgtgatc ctgctgttat ggctgaattg agcagtcttc      2940
     tgttgagaac caatccatat gcacaggcat acaagatgat ggctgaagtt gaagaaaaag      3000
     aaaattctga agctgcaaag gaaggacgac atccgggatg cgttcgactg atcttcgata      3060
     tttcgacaac taaggatcca cgacgttata acttgccaca agcgaatgaa gtcgcagttg      3120
     tttttgtggg cgaagacgat gacgtgccaa ccactcgctc tttggctgtt catccaagag      3180
     gaggaggact taagacgatt cgtgatatcg ataggatctg cgatcctctc acatatcctg      3240
     tattgtttcc aaatggaacc gacggatggc atcctgactt ggaaaagaga ccatcggaga      3300
     agaaacaagg aaggattact cagaagatgt actacagtta cctgctcatg gagagatcag      3360
     gagttttcaa tccactgcat cacgggcgtg ccctgtttca acagtttgca gtagactcat      3420
     gggtaaaggt aagaatacat gatctcatgt tcacaaaata atcatgtttt tgcagatcga      3480
     gcaaaacagg ctaaactatc atcgaactca tcaagttgat ttgaaagccg ccaactacaa      3540
     tgcggttcag gattatattg ctggagatac tgatgtccca ggaagacgca tcgttcttcc      3600
     atcatctttt ccagggagtc cccgagcaat ggtccaaaac tttcaagacg cgatggctat      3660
     tgtctcgaag ttcggaaagc ctgatatatt tttaactttc acgtgtaatc ctgcatggac      3720
     agagatttct gaaaacctcg gtccgcgaca atctgcatct gatcgtccag accttattgc      3780
     ccgtgtcttc aagctaaaag taagttgaag atctatattt aactcatcac tttcttcatt      3840
     gtgttccagg tagatgcgct gtttgacgat cttctaaatc gggatattct cggacacgtt      3900
     gccgcataca tttccgtgtt cgaatggcaa aaacgaggtc ttcctcatgt acacatgctg      3960
     ttaactatgg cagagaactc aaagccacga acctcggagg acatcgacaa gattgtgcaa      4020
     gctgagattc caaatcctga caacgagcca gaacttcatc gcattgtgac caccgccatg      4080
     atgcatcgtc catgtggtgc tcaaaatcct cactcgccat gcatggttga tgggcactgc      4140
     tcgaaaaggt atccgaagga ttttcatcct agcaccactc tcaacgttga tggatatccc      4200
     gggtatcgtc gaagggatga tggacgatat gtggaatatg gcacccaaca tctcgataac      4260
     aggagagttg ttccatacaa caaatggctt ctgctccgtt acaatgctca catgaatgtc      4320
     gagatttgtg gattcatcga agctgtaaaa tatctcttca aatatgtcta caaaggacat      4380
     gaccgtgctg cactcaacat catccaaaat gtacgtggag atggaaatgt tgttgatgag      4440
     atccgagagc atctagatgc tcgatacgtc tgtgctcccg aggcaatcca ccacatcttg      4500
     ggattcaaac tggaaaagaa gtccgataca gtttattgac tcgctgtgca tctcgaagga      4560
     ttccaaacga tctactttag agccagtgtc accacacaac aactcgaatc ttcatcacaa      4620
     accgacacga ctctcacagc ttggtttaag atcaaccaaa agagcaagga tattgcggag      4680
     agcgggaaca tcccttcgac atttgttgat tcacgccaat tcttctacat ggatatgcca      4740
     acgcacttca cctttgtgaa aaaggatggc tggaaggttc gaggaagagg cacaaggcag      4800
     ataggccgaa tgtacactgt cccaccatac gaaaccgaga gatacgcact tcgaattctt      4860
     cttttgaaca tcaaaggagc gacgtcattc gaagatcttc gtactgtttt ggacgagaac      4920
     aatgttccag tggtatacgc aacttatgtg gaagcagcaa aagctcaagg acttctgaat      4980
     gatgacagcg aatatttgaa gtctttgaaa gagtgggctg gatgctcagt gcccgcagct      5040
     cttcgctcaa tgtttgtcgc tatcattctt tttaacgaag ttcacgatct gaacgcactt      5100
     tgggatgccg tgaagtggga tctttctgag gattttcgcc atgctggagc agggaaagaa      5160
     gaggctgagg cacttgcata ttttgatatc gaaagtcgcc ttcaaaggta tcttttgagc      5220
     ttttttcaaa agtagattat aatatttttc cagggttgga aaaagattcg atgtcaccaa      5280
     accatctatc aatccgccac caatcgatct cgacacagtc aaccctgctc aatgtgcatc      5340
     agaaggcaat aggctccttg cgacactcaa tgatcaacag aaacgtgcag ctgaccagat      5400
     ccttgctgca ttagatgatg cctcgctacc ccgtcttttc tatttggatg ggcctggagg      5460
     gagcggaaag acttatctct acatcactct gtacaacatc tgtgttggaa gaggactgaa      5520
     ggtaaacttt caaccaaaca tactaaagtt atttcaatac tgcatatttt caggtagcgt      5580
     gtacggcgtg gacaggaatt gcagccaatt tactcccact cggtcgaaca tccgcttccc      5640
     ttttcaagct tgatattaga aatcaatgca agtcttctct tcatcagagg caattgaaag      5700
     aagcacaaga gctagcggag aacgacgttt tcatttggga tgaagcatca atggttccca      5760
     aggtattaga gtgattctga tcgtactaat caaatcattc attcaacttt cagacagccc      5820
     tcgacacggt cgatgtactg cttagggatc tcacaaagat cgatcagcca tttggtggga      5880
     agatcctgat cctcggagga gactttcgcc aaatcctacc tgtggtggag agaagctcta      5940
     gagctgatca agtagacgca tgcatcaaaa gatcaccact atggacagag tttcaaattt      6000
     tgcatctcat ctcaaatatg agagtaacat ctggagactc ggattggatc caattcctcc      6060
     tcaatgttgg cgatggatct gcaaatgact ctgattcaaa ggttacactc ccactctctg      6120
     tcatgtgcga tcacaacatc gtcgaggaag tgttcggagc agttatcgat ccaaccacgt      6180
     ctgatccatg tgacaacgtc atccttacac ctaagaacgt cgacgttgct caactgaatg      6240
     acgatgttca caatcgaatg gttggcgagg aaagaatcta tctgtcacga gatgaagtga      6300
     tcgtggaaca tcaagcggat actatgcact atcccaccga gtttctcaac aagatgtccc      6360
     catcatctct tcctccccat attctcaagc tgaagaaagg ctcagtgatc attctgctca      6420
     ggaatctcga tgtttccgct ggcctttgca atggttcccg tttcattgtc gaaacattgg      6480
     ccagtcactc acttggatgt cgctttgcaa ctggcgagag gaaaggacat ttcacaatca      6540
     ttccaagaat cgattgctat gatgataaga acatctcttt ccaactcagg cgcacacagt      6600
     tcccagttcg cttatcattt gcattatcga tcaacaaggc ccaaggacaa tccttttcta      6660
     aaatcggtct ctggattccc accgatgttt tcactcatgg acaactatat gttgctctat      6720
     caagagttcg taccaaagaa ggtcttattg taaaatccag ttctaatatt gtcaccaata      6780
     tcgtttttaa tgaagttctt tgaataaagc ttattattct tctctgctat ctcgctagac      6840
     aactcagctc tcttctgagg tctcactcga caactcatct cttctctgct atctcgctag      6900
     acaactcagc tctcttctga ggtctcactc gacaactcat ctcttctctg ctatctcgct      6960
     agacaactca gctctcttct gaggtctcgc tcgacaactc atctcttctc tgctatctcg      7020
     ctagacaact cagctctctt ctgaggtctc gctcgacaac tcagctcttc tctgctatct      7080
     cgctagacaa ctcagctctc ttctgaggtc tcactcgaca actcatctct tctctgctat      7140
     ctcgctagac aactcagctc tcttctgagg tctcgcccga caactcatct cttctctgct      7200
     atctcgctag acaactcagc tctcttctga ggtctcgctc gacaactcat ctcttctctg      7260
     ctatctcgct agacaactca gctctcttct gaggtctcgc tcgacaactc agctcttctc      7320
     tgctatctcg ctagacaact cagctctctt ctgaggtctc gctcgacaac tcatctcttc      7380
     tctgctatct cgctagacaa ctcagctctc ttctgaggtc tcgctcgaca actcatctct      7440
     tctctgctat ctcgctagac aactcagctc tcttctgagg tctcactcga caactcatct      7500
     cttctctgct atctcgctag acaactcagc tctcttctga ggtctcgctc gacaactcat      7560
     ctcttctctg ctatctcgct agacaactca gctctcttct gaggtctcac tcgacaactc      7620
     atctcttctc tgctatctcg ctagacaact cagctctttt ctgctatctc gctagacaac      7680
     tcagctctct tctgaggtct cactcgacaa ctcatctctt ctctgctatc tcgctagaca      7740
     actcagctct cttctgaggt ctcgctcgac aactcatctc ttctctgcta tctcgctaga      7800
     caactcagct ctcttctgag gtctcgctcg acaactccag ccttctcact cgcccccata      7860
     tgtaggagta tggggggagg gagtattatt ataaccacag aaacacaaca atgtgccaca      7920
     taagagacag gagatagtgc tcgcactacc cctgaatcac caaccctctc agaagcacct      7980
     ctgctcttat ctgggtctcg ctagacatct ccagtagttt gaccattctc agcaacactt      8040
     ttgctatttt agaatttttt tgccctcgcg gggatcgaac caaaaggtcc gcgcgccaat      8100
     gacgcgcgcg ctaccagctg tgccatgctg gaagcgattg aacttcgacc aataacaata      8160
     tacaacattt ctttatttgt caaagtgaaa tagttttgaa caaacactat tcaaaaaagt      8220
     aattttaaat tgaaattata tcaaattcac gatttgttcc caaatattta aaactgaaac      8280
     tcaataagag aagatctcat attctcactg ataatccgaa acatgacatt tgtttcaatg      8340
     ctgttttcaa cctcaagttg taaaattcaa aaaccaagct gaaaatatgt tttaaaaatc      8400
     tagaaactac aataattttt atgtgaattt ttggaaaaat ctcaagccag acggagcacg      8460
     cgccttggcg cgtgcgaacg gctggt                                           8486
//
ID   LCRP1       repbase;    DNA;    INV; 216 BP.
XX
AC   L42497;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Leishmania chagasi DNA repeat.
XX
KW   Repetitive element; LCRP1.
XX
OS   Leishmania donovani chagasi
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania; Leishmania donovani.
XX
RN   [1]
RP   1-216
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42497; Positions       1     216.
XX
SQ   Sequence 216 BP; 57 A; 68 C; 63 G; 28 T; 0 other;
     gcaagaatca agaggcggtg tcacagagat gggcgaaggg ggacggcggg agcggcagag        60
     agagcgcggg cacacagcga cgtccgtgga aagaaaaaaa gagaagacaa cgcgtattcc       120
     cttctgctaa tgtgtacccg cctctctgcc acagatcacg aggtcagctc cactccaccc       180
     taacgcctcc cccgcgcaga cctgtcacac gctccc                                 216
//
ID   HOMER       repbase;    DNA;    INV; 3789 BP.
XX
AC   AF110403;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Bactrocera tryoni transposon Homer putative transposase gene,
DE   complete cds.
XX
KW   hAT; DNA transposon; Interspersed Repeat; HOMER.
XX
OS   Bactrocera tryoni
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Tephritoidea; Tephritidae; Bactrocera; Bactrocera.
XX
RN   [1]
RP   1-3789
RA   Pinkerton C.A., Whyard S., Mende A.H., Coates J.C.,
RA   O'Brochta A.D., Atkinson W.P.;
RT   "The Queensland fruitfly, Bactrocera tryoni, contains multiple
RT   members of the hAT element family of transposable elements.";
RL   Insect Mol. Biol0-0 (1999)In press.
XX
RN   [2]
RP   1-3789
RA   Pinkerton C.A., Whyard S., Mende A.H., Coates J.C.,
RA   O'Brochta A.D., Atkinson W.P.;
RT   "HOMER.";
RL   Direct Submission to Repbase Update (01-DEC-1998)Entomology,
RL   University of California, Riverside, CA 92521, USA.
XX
DR   GenBank; AF110403; Positions       1    3789.
XX
SQ   Sequence 3789 BP; 1254 A; 651 C; 687 G; 1197 T; 0 other;
     cagagatctg caacggacac acaatttccg tgcacactcg aacacttacc caaaaccggc        60
     ttgtatcgct ttctttgaac gagcagaagg attgctcgtt agcgactgtg cgcacgcgaa       120
     cgtgctgatc acaacactcg agtgtcgtgc atacgtgttc gtttgggttc gggtgttttg       180
     cgaatcaata tgttcgagtg tccgagtgta ggctcgagtg tccgagttta ggctcgagtg       240
     tgcaaagcat tttttgttta tgtataatcg ttagtacagt tgattaattt gctttgtgag       300
     tgttaggaat tttatatgat acatattaca tgatatatat tgaaaataat ggccgaaaaa       360
     gaagattcta ttggttgcaa aattgcgaat ggcagttaca gcttgtctgg taagcgcaaa       420
     ggccgaagtt tcgtatggaa tattttatca gaaattttga aaccggacgg aactttactg       480
     gaaggttttg tttactgccg cacttgctta aaagtattga aatattataa tggtcagacg       540
     tctaacctaa ttcgtcaccc atgctgcaga aatattaaaa catcacaaga attaagaacc       600
     gtcacggtgg aagacaagaa tgaagctgta aaaaaattta catcctgggt tgttgaagac       660
     tgccgaccat tttcggttgt gcaaggctca ggctttataa aacttgtgaa attcttcata       720
     aagataggtg catcgtatgg cgaacacgtc gatgtggagg atttgttacc gagcgcaaca       780
     acaatttccc gcaatgttca aaaatgtgca aatgaaaaaa aagaagaact taaagaagaa       840
     ataaataata ttgtgagcag cggtggagct tcagccacaa tcgacatgtg gacggataac       900
     tatgtgaagc ggaacttttt aggagttacc ttccactacc aaaaagactt gaaattcttc       960
     gacttggttt tgggaatgaa atctatgaat tatgaaagtt cttcgggtga caatgttctt      1020
     aataaactta gcagtatgtt taaagaatat ggtgttcaaa atatgagcca aattaaattc      1080
     attactgaca gaggaagtaa tatggttaaa gctttaaaac aaaatatacg tcttaactgc      1140
     agtagccatc tattttccaa tgtattggac aaatcattcg aggagacaga agagcttaca      1200
     gatgtgttag cttcttgtaa aaaaattgtt aaatatttta agaaagcaaa tttacagcat      1260
     cttctaccca cttcattgaa atcccaatgt cctactcggt ggaattctaa ttatggaatg      1320
     attaaatcca taattgacaa ttggtttgaa attaacaata taatgactga taatgaacaa      1380
     agccaacgat tattacacgt aaatgtatcc attcttaaag ttttggtttc aatgtgcaaa      1440
     gattttgaaa ctgtattcaa taaattacaa ctttgcagtt ctccatcgct atgctacgtt      1500
     cttccgtcca ttttaaaaat aaaaaacatt tgtgaattta ataatagtga tatagctgca      1560
     atttcagtct taaaggagaa tataagaaaa aaaattgagg aaatatgggt tgtcaattta      1620
     agtatatggc ataaggttgc aactttttta tacccacctg ctataaatat gcagccaaat      1680
     gatttggatg atataaaaaa tttttgcatc tctcaaattc aaaataatgc aatatcagca      1740
     ccaacttcag caacatctgc gggaaacgat tccttaagcc caaccgccat ctcacctact      1800
     ttgacaacgc atttttcttt caatgaaagt aaccaaatag atcaaagcca ttcttcttct      1860
     ttatgttcaa aaactggagg cgatacattc tttttcactt atttggttaa acgaaccacc      1920
     ccacaagcca cagaaaagcc tgaagatgaa gttgagagat atagcagaga agaggtagag      1980
     atgactgaaa attttaattt gatggagtgg tggcaaagta atcagagtaa atacccccat      2040
     ttatcaaagt ttgcattgca gattcatgca atcccagcca gcagtgcagc tgcggagaga      2100
     tctttttctt tagctggcaa cttaattact gaaaaacgta acagaatagc gccaggctct      2160
     gttgacagtt tgctgttctt aaatacatat tataaaaact ataatgctta atggttggga      2220
     gttatatcta aagtatgcgt gcaatgatag ttttataaac atattttcct ttatttatat      2280
     ttaatttcaa gagtgataaa aagcatggaa tgcgtttttt ttaatgattg aatgattgaa      2340
     atatcttttg tttatgcgaa gactgattta ataaaagtat attgaagaat gaaaacagaa      2400
     gtttttataa ttatataagc atatttgtcg ccaagaggtt tggcgggaca ggttattgaa      2460
     aacgtggtca atacccccaa aagtggacgt atgggcatcc tactctaggt tggatatttt      2520
     cattcattta aaaagtatta taatctgcaa taattcagaa tcacgatcac gcaaacaaac      2580
     aaagagtgtg aaactttgca ttatacactt cagaactcaa acgcattttg tacggacatt      2640
     catcttaaaa ttattttaat ttcgtatgac acttttagca agcttaggca gctaagatat      2700
     atacatttat atatttacat atatattcct tgcgctcgct atgattagga ataagcgaaa      2760
     tcttaaattt aataaactta tactagcaaa aatcaaaata tcattgctca tataaattcg      2820
     tatataaaat gtatgctaca attactatat agtagtccaa aaatatgaat tcttattttt      2880
     cacagaaata cttttgctaa aaaaggatct ttttcttttc ttatttttcc cagaaataca      2940
     tttgtaaaag gatcgtaatc cttttttatt ttcctcataa aagatttaaa cagttcaaga      3000
     gctcaaaaca tgcgctacat cagctaccta ctaaattttt caatagctca aagcatgcgc      3060
     tacatcagct cgaacctacc taccctacgc ctttgcgcaa atgattatct tatgataaca      3120
     aatgcccaca tatagatttg gcaatggcaa tagcaataga tttgacagtt agcaagacat      3180
     agattttatc ctgtcgagat gccccgtaag taagtatgaa tgtacatata tctatactag      3240
     ccactctctt tattgattgg tttttcccaa aacacaaaat gcagttgcag tcaagtcaca      3300
     ctgcttggaa acacacgtat gcatgtaaaa aagcaactat cattattctt ctctgattct      3360
     taactgggtc ttatgttatg gttatgcaac tatattttta attttaaaat gcgtcattcc      3420
     tttgatacat gcatacatat agtttaaatg ctgtatttca atgatattgg ctgttaaagt      3480
     gtatacagca ttaataattt ctcatatttt tgctcagaaa aatgtgatac acttcttcta      3540
     catccgtgtt ctgtccgagt atccgtgcaa tagttgaaca aatttcgggt tagcttcggg      3600
     tgtcgagtgt ggacactcgc ttgtgatcgt tttgaagaga gtatgatcga acagactcga      3660
     acacacagaa agcagctgcc gggtgtgcca ctcgatcgaa cccattgctg ccgagtgtgg      3720
     cgctcgctcg tgctcgattt ttaatgaggg tgatcgaaca tgttcgaaca cacccaatgc      3780
     agctctctg                                                              3789
//
ID   Boudicca_INT repbase;    DNA;    INV; 4279 BP.
XX
AC   BK004066;
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Schistosoma mansoni Boudicca LTR retrotransposon mRNA, complete
DE   sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Boudicca; Boudicca_INT;
KW   Schistosoma mansoni.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Boudicca_INT.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004066; Positions       1    4279.
XX
CC   Key Location/Qualifiers
CC   CDS 236..1069
CC   /codon_start=1
CC   /product="gag protein"
CC   /protein_id="DAA04496.1"
CC   /db_xref="GI:44829165"
CC   /translation="MTEHSPKVFKLKSIPPISIQLTPFWPDNIESWFCYAEADFCMHG
CC   ITDSRTRFLAVVKALPREFNRYVTPSMFTSDVSEPYESLKLSILKRGDLTDRQRLDQL
CC   LNNIDLQHGSATDMLLRMREVIGQRTFDDGLFRQLFLSKLPQQVQAVLVSFQNNAIDE
CC   LAASADRILEITKFSKAEVFTIKEKPQSTSTDMAELCHTLTRCLRVRNDRSRSKTPRR
CC   SASRKRSGSRPRETDNPDWCWYHNQYGKFSRNCRKPCNYPTPKSSDTKNSSGNFPAGT
CC   R"
CC   CDS <1027..4200
CC   /note="start codon not determined"
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04495.1"
CC   /db_xref="GI:44829164"
CC   /translation="HEKQFGKLPSRHALTATVAGEHSRLSYVTDVTTKVRYLVDTGAE
CC   VSVLPANLDDRLRESVLSLQAANGKPIATYGKRYVYLNVGLRKPIHWIFVVADVSMPI
CC   IGIDLLQHHNLLIDTRARRLIDGNTKLSVCVTPCSGCRLSPVTIKHTIDPLYQAVLDK
CC   YPGICQSQSKLPCVTSNVTHHISTTGPPVFSKARRLAPEKLRLAKNEFDHMMDLGIIR
CC   PSNSPWASPLHMVPKKDSNDWRPTGDYRRLNAKTIPDRYPLPHIHDLTATLKGTTVFS
CC   KIDLVKAYNQIPMAPDDIPKTAIITPFGLYEFLRMPFGLRNAAQTFQRFIDDVFRGLN
CC   FVHAYVDDCLIASPDRESHLKHLDIVFDRLQRHGITVNIQKCQIGTNCLDFLGHTIDA
CC   QGIRPLRSKVAAILDYPEPTTIKQLRTFNGLVSYYRRFIPKCASLMKPLTDQLRGNAK
CC   SISLDDIARKAFSPVKEHIVKAPLLAHQDTQAPISIAVDASDSAIGAVLQQWVNNSWQ
CC   PLGFFSRRLLDAESRYSTFGRELLAMYCAVRHFQHSIEGREFTLFTDHKPLTFSLNSS
CC   SDKYSPRESRQLDYISQFTSDIQHISGANNVVADALSRISSLNSFQGIDLLKLAQLQK
CC   EDIDLQHELSSTTLKLSIRQMGTGKETLLCDTSTGRDRPIVPKHYRRNVFNTLHNLSH
CC   PGARATVKLIAERFCWPGMNKDVREWARSCVSCQKSKVIRHNKCPLGYFKTPDARYDH
CC   VHLDLVGPLPDSNGYSYLLTCVDRFTRWPEAVPIKDITAETVARAFVERWVENFGCPS
CC   TITTDRGRQFESGLFRCLTSLLGIMRFRTTAYHPQANGLVERFHRRLKASLSASNVSQ
CC   WTDALPLVLLGIRNAVKADIGYTASQLVYGTTLRLPGEFVDPSASSLNMDLNSYTSRL
CC   TNAMRSVKPAHTRPQSTDVFVQPELRHSTHVFVRRDSHRRPLESAYEGPFKVLQREPK
CC   YYVVDKNGTKDSISIDRLKAAYLEGNPSYVDFPSVQANDTATTLVVPYTTTDTQLDTS
CC   STSIEKPKTTRFGRRVRFPEHLNEYCT".
XX
SQ   Sequence 4279 BP; 1225 A; 1080 C; 842 G; 1132 T; 0 other;
     atagaaggtg ctactggtat ccagttgtaa aactagaata tccgttgcat catcattggt        60
     gagaccgacg tgatctggta caccaagtca atatactgtg agtctgttcc attttggaat       120
     attattattc attgttattc tttatttgaa ttttatatat tgtgatatac cttttttcgc       180
     gaattttttt tctcggatat attttaatta gacatttttc gttagctata ttactatgac       240
     ggaacactca cccaaggtct ttaagttaaa gtctattccc cctatttcga ttcagttaac       300
     gccattttgg cccgacaata tcgagtcctg gttctgctat gcagaagccg atttttgcat       360
     gcacggaatc acggactcgc gcacacgttt cctcgcggta gttaaggcgt taccgcgcga       420
     gtttaacagg tacgtaacac ctagtatgtt tactagtgat gtttccgaac cttacgaatc       480
     gcttaagcta tcgattttaa aacgaggaga cctaactgat cgacaacggt tagaccaact       540
     ccttaacaat atcgacttgc aacatggttc cgcgacggac atgttgctta gaatgagaga       600
     agtcatcggc caacgaactt tcgatgatgg cctatttcga caacttttct tgtctaaact       660
     ccctcaacag gtgcaggcag tgcttgtttc atttcaaaac aatgccatag atgaactagc       720
     tgcatctgcc gatcgaatct tggaaatcac caaattttct aaggccgagg tttttactat       780
     caaagaaaaa ccccaatcga cctcgactga catggccgaa ctatgtcaca cgcttacacg       840
     atgtcttaga gttcgcaatg accgtagtcg gtcaaaaacc ccgcgtagaa gtgcctcacg       900
     taagcgatct ggctcccgac cacgagagac agacaatccc gactggtgct ggtatcataa       960
     ccagtacggt aagttttcca gaaactgcag gaaaccttgc aattatccga ccccgaaatc      1020
     gagtgacacg aaaaacagtt cgggaaactt cccagccggc acgcgttaac ggcaaccgta      1080
     gccggcgaac acagccgtct ctcatatgtc acggatgtga ctacgaaagt tcgctacctc      1140
     gtcgacactg gcgcagaagt tagcgttctt ccagcaaatc tcgacgacag acttcgcgag      1200
     tctgttttaa gtttacaggc ggcaaacgga aagccgatcg ctacttacgg taaaaggtac      1260
     gtctacctta acgtgggttt acgcaaaccc atacactgga ttttcgtggt tgcagatgtc      1320
     tctatgccaa tcattggtat agacctgtta caacaccaca atctactcat cgacacacgc      1380
     gcacgaaggt taatagacgg aaacactaag ttatccgttt gcgtaactcc ttgttctggt      1440
     tgcaggttat ccccagtcac gattaagcac accatagacc ccttgtacca agcagtactc      1500
     gacaaatacc ccgggatatg ccaatcgcaa tcaaaattac cttgtgtaac cagcaatgtt      1560
     acacatcaca tctcgactac aggaccacct gtattttcga aagcccgaag actcgctccc      1620
     gagaagctta ggttagctaa aaacgaattc gaccacatga tggacctagg gataattcga      1680
     ccatcgaata gtccatgggc atccccattg cacatggtcc ctaaaaagga cagcaatgat      1740
     tggcggccaa ctggtgatta tcggcgtctg aatgctaaaa ccattcccga tcgttacccg      1800
     ctgcctcata ttcacgattt gacagctacc ttgaaaggta caactgtctt ttcgaaaatc      1860
     gacttggtta aagcttataa ccaaatcccg atggcacctg acgacattcc taaaaccgcc      1920
     atcatcactc ccttcggtct ttacgaattt ctacgaatgc cttttggttt aagaaatgcg      1980
     gctcaaacct tccaaaggtt tatagacgac gtcttccgag gtctcaactt cgtacatgcg      2040
     tatgttgatg actgtctgat agcaagtccg gacagagaat cacatctcaa gcatctggac      2100
     attgttttcg atcgactcca aaggcatggc attactgtca acattcagaa atgccaaatc      2160
     ggaactaact gcttagactt cttaggacac actattgatg ctcaaggcat ccgaccactt      2220
     aggagcaaag tggcggccat tctggattac ccggaaccga ccacgatcaa gcagttacga      2280
     actttcaacg gactcgtgag ttactataga cggttcatac ccaagtgcgc atccctaatg      2340
     aaaccgttaa ccgatcagct tcgtggaaat gcgaaatcaa ttagtttaga cgacatagcc      2400
     cgtaaagcat tctccccagt taaggaacac atcgttaaag cacccctgct tgctcatcag      2460
     gacactcaag cgcccattag tatcgcagta gacgcatccg actcagcaat cggagcagtc      2520
     ttacaacaat gggttaacaa ctcatggcaa cctctaggat ttttctcgag acggttgtta      2580
     gacgcggaat ctaggtacag cacgttcggt agggaactcc tagctatgta ttgtgctgta      2640
     cggcattttc aacattccat cgaaggaaga gaattcacgc tttttaccga tcacaaacct      2700
     cttaccttct ctttaaattc atcttcagac aagtactcac cgcgagagtc tcgacaactc      2760
     gactacattt cgcagtttac ttcagacata caacatattt ctggagcaaa caatgtagtc      2820
     gcagacgcct tgtctcgaat tagctccttg aacagtttcc aaggaatcga ccttcttaaa      2880
     ctcgctcagc ttcaaaaaga agacattgat cttcagcatg agttatcctc gaccactctt      2940
     aaactaagta ttaggcagat gggaacaggt aaggaaacct tactgtgtga tacatctaca      3000
     ggtagggatc gtccaatagt accaaaacat tatcgacgca acgtcttcaa tacgttgcac      3060
     aatctttctc acccaggtgc tcgtgcaaca gtcaaactta tagccgaacg cttttgttgg      3120
     cctggcatga ataaagacgt gagggagtgg gcacgctcct gtgtaagctg tcagaaatct      3180
     aaggtaatta gacacaataa atgtccctta ggctatttca aaaccccgga tgctcgttac      3240
     gaccatgttc atctagattt ggtaggaccc ttacccgact cgaacggata ctcatatctc      3300
     ctaacatgcg tagaccgttt tactcgatgg ccagaagcag taccgattaa ggacattact      3360
     gctgaaaccg tggctcgcgc tttcgtcgaa cgatgggtag aaaatttcgg ctgcccttca      3420
     accatcacta cagaccgcgg acgccagttc gaatctggac ttttccgttg tctgacctca      3480
     ctattaggaa tcatgcgctt ccgaacgacc gcctaccacc cacaagcaaa cgggttggta      3540
     gaacgttttc atcgacgact aaaagcttca ttatcagctt caaacgtttc acagtggaca      3600
     gacgctcttc cactcgtctt gctaggtatc cgcaatgcag tgaaagctga cattggatac      3660
     acggcatctc aactcgttta cggaacgaca ctccgactcc caggagaatt cgtggatcct      3720
     tcagcttctt cattgaacat ggatctaaac tcttacacga gtaggcttac aaacgctatg      3780
     cgttcagtta aacctgctca cactcgacct caatcaactg atgttttcgt tcaacccgaa      3840
     ttacgacata gtacacacgt cttcgttcgt cgagactcac atcgacgacc cctcgaatca      3900
     gcatacgaag gacccttcaa agttcttcaa cgcgaaccta agtactatgt agtcgataag      3960
     aacggtacga aagatagcat cagtatcgat cgactcaaag ctgcgtacct agaaggaaac      4020
     cctagctacg tcgattttcc ttcggtacaa gcaaacgaca cagctactac actcgtagta      4080
     ccctacacga caaccgacac acaacttgat acttcgtcaa cgtcgataga aaaacctaaa      4140
     acaacgcgtt ttggaagacg agtaagattt ccagaacatc ttaacgaata ttgcacgtag      4200
     gacataagct ttatcttgaa ttaccctttc aaagtttatt ataatttttt tttaatatgc      4260
     tcattttttt tatttatat                                                   4279
//
ID   CERP1A      repbase;    DNA;    INV; 1341 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   09-JUN-1999 (Rel. 3.3, Last updated, Version 3)
XX
DE   Nematode CeRep1.1 repeat DNA - a consensus.
XX
KW   CeRep1 repetitive sequence; CERP1A.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1341
RA   Felsenstein M.K., Emmons W.S.;
RT   "Structure and evolution of a family of interspersed repetitive
RT   DNA sequences in Caenorhabditis elegans.";
RL   J. Mol. Evol 25, 230-240 (1987).
XX
RN   [2]
RP   1-1341
RA   Jurka J.;
RT   "CERP1A.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
CC   [2] (Consensus)
XX
CC   This element has a 384 bp perfect palindromic structure.
XX
SQ   Sequence 1341 BP; 401 A; 264 C; 246 G; 430 T; 0 other;
     cgagggggta cgttttcgta aggggatttt ttcgtaagga acgctttcag tagggcaatg        60
     tgcggcgcgc cttttcgcaa gcccgccgca cagtccttcg caatgcgccg cacggctttt       120
     tgcaatgcgc cgcacgcttc ttcgtattta tttatttatt tttccaacag gaaatttcga       180
     acggaattca attaaaaacg gatttttaat ggaaattaat tagttttatt cgagctaaat       240
     acggatattt tcagaatttt cgatgacaaa aacgggtttc aatcgatttc gaatcgatca       300
     aaattaatat taatcgaaaa tgagcgtttc cttcccggaa aaagaagaac ttgatgctga       360
     gagtgatcca agcggagcca aacgcttttt tagaggcaag tattgatgtc taaagattaa       420
     ttgaagagtg aaaagtattt ttcagagttc acaaacaacc cgagtgagca gcaattttcc       480
     aagctgaagg caagtttctt tttgtagttt tttaagttct caaataggta tataacatcg       540
     atttgttttg ttttccagag aatgtatcat cacaacgact atcaaaacct gcgaggagtg       600
     attcaaaaga ccattcaact atcaaaatca ttgatcctag acttgaagag acgatccgga       660
     aatcgaacaa ccgctgtgcc attatacaaa aaccccgatt tctgtacttc agtgtttttg       720
     aattataccg gtttcagtgc ttttaatgag aaacttttcc cttttatgga aattccgaaa       780
     tgctatcact gatctctttg tttacctctg tgccattaga ttatagaaac aattttccat       840
     actcaggtta tccaaatttc gccatgattt ttcttactta atttaatcga attaactttt       900
     gtttgcagtt ttattttcca tttcgactga ataaaaaatc acttctatca ttttaatcgt       960
     ttggctccgc ctggatcact ctcagcatca agttcttctt tttccgggaa ggaaacgctc      1020
     attttcgatt aatattaatt ttgatcgatt cgaaatcgat tgaaacccgt ttttgtcatc      1080
     gaaaattctg aaaatatccg tatttagctc gaataaaact aattaatttc cattaaaaat      1140
     ccgtttttaa ttgaattccg ttcgaaattt cctgttggaa aaataaataa ataaatacga      1200
     agaagcgtgc ggcgcattgc aaaaagccgt gcggcgcatt gcgaaggact gtgcggcggg      1260
     cttgcgaaaa ggcgcgccgc acattgccct actgaaagcg ttccttacga aaaaatcccc      1320
     ttacgaaaac gtaccccctc g                                                1341
//
ID   TIRANT_I    repbase;    DNA;    INV; 4352 BP.
XX
AC   X93507;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   D.melanogaster LTR retrotransposon Tirant - an internal sequence.
XX
KW   LTR retrotransposon; GYPSY superfamily; TIRANT_LTR; TIRANT_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4352
RA   Viggiano L., Caggese C., Barsanti P., Caizzi R.;
RT   "Cloning and characterization of a copy of Tirant transposable
RT   element in Drosophila melanogaster.";
RL   Gene 197, 29-35 (1997).
XX
RN   [2]
RP   1-4352
RA   Caizzi R.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (27-NOV-1995)R. Caizzi,
RL   University of Bari, Institute of Genetics, Via G. Amendola,
RL   165/A, I- 70126 Bari, Italy.
XX
RN   [3]
RP   1-4352
RA   Caizzi R.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (14-JAN-1997)R. Caizzi,
RL   University of Bari, Institute of Genetics, Via G. Amendola,
RL   165/A, I- 70126 Bari, Italy.
XX
DR   GenBank; X93507; Positions     416    4767.
XX
CC   The 5.3 kb TIRANT present in the GenBank sequence X93507
CC   possesses
CC   identical 417 bp long terminal repeats (TIRANT_LTR in Repbase) at
CC   both ends. There is a serine tRNA binding site downstream of the
CC   5' LTR sequence and a polypurine tract upstream of the 3' LTR
CC   end.
CC   The insertion leads to the duplication of a host-site CGCG
CC   sequence.
CC   In situ hybridization to salivary glands chromosomes showed
CC   evidence of the mobile nature of the element. The DNA sequencing
CC   of
CC   the cloned 5.3 kb element revealed that TIRANT possesses an open
CC   reading frame (ORF) that shows similarity with the envelope
CC   protein
CC   encoded by the gypsy and 297 retrotransposons. In addition, the
CC   cloned
CC   element appears to be a subgenomic fragment of a not yet
CC   identified
CC   complete element, because only the integrase domain of the
CC   reverse
CC   transcriptase gene is found [1].
XX
SQ   Sequence 4352 BP; 1589 A; 998 C; 683 G; 1082 T; 0 other;
     ctggcgcagc cggtaggatg tcctacctat taataattac ctacctgtaa gtaaacatgt        60
     aagaaacgaa acaaactata tgcaagatgt cgactgaaag tgactaggaa caaattttta       120
     taaaacaaaa ttgaagttgt gaagtaccaa atgaaactca aacatatatt caaacacagg       180
     aaaaaaaaaa gagagaggaa aaatgtaaaa taaataaata tacaaaaaaa gtgcatgtgt       240
     accgtactgc cgcgctgacg tggaatctat cgctgatcat cacgccatcg gtatgtccat       300
     actctgccaa acgtcataat ttttataaaa aagtgcaagt gtaccgtact gccgcgctga       360
     cgtggaatct atcgctgatc atcacgccat cggtatgtcc atactctgcc aaacgtcata       420
     attttttata aaaaagtgca agtgtaccgt actgccgcgc tgacgtggaa tctatcgctg       480
     atcatcacgc catcggtatg tccatactct gccaaacgtc ataattttta taaaaaagtg       540
     caagtgtacc gtactgccgc gctgacgtgg aatctatcgc tgatcatcac gccatcggta       600
     tgtccatact ctgccaaacg tcataatttt tataaaaaag tgcaagtgta ccgtactgcc       660
     gcgctgacgt ggaatctatc gctgatcatc acgccatcgg tatgtccata ctctgccaaa       720
     cgtcataatt tttataaaaa agtgcaagtg taccgtactg ctgcgctgac gtggaatcta       780
     tcgctgatca ccacgccatc ggtatgtcca tactctgcca aacgtcataa gtttttataa       840
     aaaaaaaaga gtgcaagtgt accgtactgc cgcgctgacg tggaatctat cgctgatcat       900
     cacgtcatcg gcacttacat acgctggcca acgcatcgcc aaagcctcta tatacactta       960
     tatatgtgag catacaatat caactacaat ccaatacatt cacgtactgt accgcctcgt      1020
     tggcatggaa tcaaacgctg atcaccatgc caccgtggta aacaaacaaa gcaccaaagc      1080
     ctccctaata cattgtacac tcaaaacgta cactgccata cgtcggcgaa aaatcaaaac      1140
     ataagcaaaa atcatttcaa accaagcgag gctcattctg cgtaccacaa cgacaacgac      1200
     actgcatgtg tagtggcgca cccatgtctg ggtagccgag gtaaggggaa aacgcttgag      1260
     tatcgtcaag tgttcttgcc tttcactctt ctacaatggg ttgctacgct catgtattgc      1320
     acattcaaaa taaccaaaac aaatgtacta aagaagtcga catatacaga tatatttggt      1380
     tccctttcat tgtgtaattt ggtatatcaa acaaatacta ataccaatca cattgcaaaa      1440
     tataaaaggg aaaatataaa gccaaagaca gacacctata cacatcatat ctacacaccc      1500
     atacactcta gtaaacaaga aatttgttca ttatttttca atcatacata atatactaag      1560
     taacctcaaa tttaatgtca aaaaagttcg tttacaacct taggaaaact acacgttcag      1620
     ttgttggagt tccaccaaac ctacttctca gcccacagtc aatttaaact cattagatgt      1680
     ttgatcttcc tccccgaaat tactgatagt acggagatcg aaaaaattat aaccgactat      1740
     cactataata gtaaccatcg agggatcgat gaaacatatt tacacataaa acgacaacag      1800
     ttcttcccac atatgaagga gagaataact cagttaattc gaaaatgtga aacatgttta      1860
     aaattaaaat acgacagaca acctcaaaag atcacttacc aaatatccga actaccttca      1920
     aaaccgttgg acatcttaca tatagacatt tatactatta acaaaaatta taaccttact      1980
     attatcgata aattttctaa atttgcggct gcctacccta taactaatag gaattgtatt      2040
     aacgtagtta aagccttaaa acatttcatt tcccaatttg gtattcccaa aaagctgatc      2100
     tatgatcagg gagcagaatt cgctagcgat atgttcaata agttctgcac tcaatttaac      2160
     attgacctgc acgttacgtc cttcaacaat cctctagtaa ctctcccgtt gaacggcttc      2220
     actcgacact aactgagatt tacagaataa tacttgacgt caggaaacaa cagaaactca      2280
     gtagcgaaca tgacgagata atgtccgaaa ccctaatcac atataataac gctattcatt      2340
     ctgcaactaa acataccccc tttgaactat ttaacggacg tactcatata tcaaccaaac      2400
     aatccagttc aataacgaac acgactactt aacgaaatta aatgaatttc cgccgagaag      2460
     ttgtaccccc tcatcacgga caaactttca aatgacgtag ttaggagaac cctaaaatta      2520
     aatgaaaccc gaacagaccc cgtagaccta caaccagaca ctttagtcct taggaaggaa      2580
     aacagacgta ataagattac acccaggttt tcgattcaca aagtcaaaca cgacaaaggt      2640
     catacattga taactgctag gaatcaaaaa ctacacaaat caaaaattcg aaaaacagtt      2700
     ttgaaaaaag acaaaagcaa caacgtaccc aacactgata ataaatgacc ccactacctc      2760
     ttaacttacc atttcaggtt cacccttgtg ccaactcagg ctatccatgt ccattattta      2820
     aatgataacg cccctatagc caagatagaa ctagggaaag ccttactaat tgagaggtac      2880
     aaaataatta gtcatgtaat caacctacaa gactacagca gatgtatgga acaattccat      2940
     ctgaccatta ataaatttaa ccccgattcc acgttgacgg actccgtcac aattttaaaa      3000
     accaaattaa cccaagccca agtaaagctc aaagccctta cgccttcata tagaaacaaa      3060
     cggggtttga ttaacggatt ggggagtcta gtaaaggcgg ttaccggcaa catggatgcc      3120
     aacgacaata aagaaataca tgaagaactt gacaatataa agaaaaattc cgaagtcagt      3180
     aacgacaatc tccaaaaaca agtaatgttt aacaacgaaa tacttatccg gttcgaaaat      3240
     atcacggacc atataaataa tgaacaaatt ttgataagta aattctttga tacctcacaa      3300
     aacaaaatat acaaacactt aaacttacaa gatacccttc tggaagaaat acaatattta      3360
     aataggatta attataacat agaattattc attaaccacc taaacgacat aacagaaagt      3420
     atgctattgg cgaaaataaa tataattccc aagttcatcc taaatgaaca agaaatggat      3480
     aaaataaaaa caatactgga aaaacaaaat atcacagtca aaaatgaaca aagtatatac      3540
     aatttcctac aaatgaatac actaaattac gaacaaaaga ttatttttaa tatcaaagtg      3600
     ccaattttta aacaaccttt tcataccctc gccagactag ttccattacc aataaataac      3660
     acatattttg taataacccc aaattaccta gcttataata ttaataataa gaaatttcat      3720
     atgacccgta aatgccccaa actggataat acattcttgt gcgacgagaa cttctacgtt      3780
     gatacaccac agaacaacac atgcctggaa caccttttga acggagaaaa cagttcctgc      3840
     gatgtacggg aaaccggccc catcaccgac gtgttcgagg cagagagagg ttacatcttc      3900
     gcattcaacg tgaacaaact gaaggtatcc ctaacaaacg gctccgagct ctcaataatg      3960
     gggtcagcca tcatcagata cattaacgaa acaatacaga ttaacggtat cgattacgac      4020
     ggcacggttg acacgttccc tgaacagacg gattttgatc ttccccccat gcgaaaagta      4080
     actaggaata ccactattac ggtactaagc ctagaaaaac tgcacctcga agccacccaa      4140
     acaatggata aaatcctggc cgtccatcac aatactatac agcacacctg gacactctac      4200
     gctctgctcg gattggtaac gttcctagca gtcatcttat ggctgcaccg acgaacgaaa      4260
     cacatcgtcc acatccacga ggatcatcac gtaccaatct acgcgtcatc cataccttcg      4320
     ctatggccgt cacttcgaac tgggggggga gg                                    4352
//
ID   DeuSINE     repbase;    DNA;    INV; 347 BP.
XX
AC   .
XX
DT   05-JUL-2006 (Rel. 11.06, Created)
DT   05-JUL-2006 (Rel. 11.06, Last updated, Version 1)
XX
DE   Deuterostomia SINE element - consensus.
XX
KW   SINE3; SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   DeuSINE.
XX
OS   Metazoa
OC   Eukaryota.
XX
RN   [1]
RP   1-347
RA   Nishihara H., Smit A.F., Okada N.;
RT   "Functional noncoding sequences derived from SINEs in the
RT   mammalian genome.";
RL   Genome Res 16(7), 864-874 (2006).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 347 BP; 68 A; 88 C; 87 G; 98 T; 6 other;
     tatgaatcct aatgccccag catrgtgatt gggggcactg trctgttgra ggtgccgtct        60
     tttcggatga gacgttaaac ggaggtcctg tctactctct gtggtcatta aagatcccat       120
     ggcacttttc gtaaagagta ggggtgttaa ccccggtgtc ctggtggcca aattcccact       180
     ctggccctta wccatcatgg cchcctaata atccccatct actaattggc tmcatcactc       240
     tctcctctcc actaatagct gttgtgtggg tgtgcgttct ggcgcaaaat ggctgccgtc       300
     gtttcatcca agaggtggct gcactgcact gtcagtggtg aggagaa                     347
//
ID   DMCR1A      repbase;    DNA;    INV; 3102 BP.
XX
AC   AC006215;
XX
DT   01-JUL-1999 (Rel. 3.4, Created)
DT   01-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   DMCR1A is a LINE-like retrotransposon.
XX
KW   Non-LTR retrotransposon; FW_DM; ORF2; CR1-like superfamily; G;
KW   DOC; DMCR1A.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3102
RA   Kapitonov V.V., Jurka J.;
RT   "DMCR1A.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
DR   GenBank; AC006215; Positions   18012   21113.
XX
CC   DMCR1 belongs to the CR1-like group of non-LTR retrotransposons.
CC   It has poly(A) tail and it generates 10-15 bp-long direct repeats
CC   upon its integration into the genome.
CC   DMCR1 forms separate family of recently or curently active
CC   LINE-like elements in Drosophila melanogaster
CC   since there are several DMCR1 copies having lesser than 5%
CC   divergence to each other. DMCR1A is most close to G_DM element
CC   (25% divergence both on nucleotide and protein levels).
XX
SQ   Sequence 3102 BP; 877 A; 949 C; 642 G; 634 T; 0 other;
     cgaagaccgg ccaccccttt cagcaaaccc tgcaccatca agctcccaag tatctccaat        60
     atgagctaca gagatgcgct catgtctacc caagtgcctc agcaaaccaa tcccaaccaa       120
     acccgtcaaa ccccacctga atctccgcaa cccagtaaca tggaacaaat gtttgctcgc       180
     ttcgaaggaa tggtcgaaag gatgatggag aagatgttct cgcaaatgac gcagcttgtt       240
     gcttccatcc tcaacgcaaa agtatgcaaa gcctaaaaat agttatttgg aatgctaatg       300
     gcctgcagag gagcagagcc gaggtggaac acctcctaaa aacagatgcc atcgatgtac       360
     tactggtatc agaaacccac ttttgtccca gatcccattt tagcattagc ggctacgatg       420
     tcatccctgc caaccatcca tctggcagag cgcgcggagg agcagccatg ctcatcagga       480
     gtggcatcca gtacacggag ctacctgcgt ttcaggagga atgggcccag tgtgccctgg       540
     ccagaatctc cagcctacat ggagacatca ccgttggagc ggtctacttc ccacctagac       600
     actcgatcac cgagactcac ctacaagatt tttttgagtc ctttggacct cgctttatag       660
     cagctggtga cttcaacgcc aaacactcct ggtgggggtc ccgctccatc aaccccaaag       720
     gcagaacgct ccacagattc ctgcagagca gaagactgga ttgccactcc tctggtgagc       780
     ctacccactg gccttcaaac ccttccttgc tgcccgacct cctggatttt gctatctcca       840
     aaggcatagg gcaagacaga ctaacttgct ccaactataa caagctgata tccgaccaca       900
     gcgctataaa aatgcttctc aacatccccg tcctcaaaaa agagttgccc agaagactca       960
     ccgggaagca cactgatgcc tccaagttca cactctggat gctgtcctcc ctgcacccgg      1020
     atcctccact ctccactcca agcaacatcg atgcggcaat caaaactctc acggatgaga      1080
     tgtacaatgc tgccgagttt gccaatcctc ctccttcaac gtccccaaga actcccggta      1140
     gagaccttca cctctggtct ccagaaattg cggccttcgt agcggaaaaa aggcgcctca      1200
     ggagaatctg gttcttctcg cgcaacccaa gggacaaggc agcactcaac agagccatca      1260
     aggaactcaa ggacaagctg tgtaccctac ggcaagactc cttcgacaga ttccttgagg      1320
     agctggaacc tggtgacccg caacataatc tgtggcaagt cacgcgtcat atcaggaggc      1380
     ctgcaaagaa ggcgtcgccg gtgcgcaaag cggacggctc ttggtgccgc tctgaagccg      1440
     aaagagctga agcgtttgca gatctccaga atgcattcac accatttgac agatgcactg      1500
     gcgaagagcg tgctgcaacc accaggttcc tagagagtcc atgtcctcct agcctgccca      1560
     tagagcccgt caccccagaa gaggttgcgc aagagatcgc ctccctaaag gctagcaaat      1620
     ccccaggact ggatcgcatc gacgccacat cccttaaaat gctgccacct ccctgttccc      1680
     agttgttggc caacatatac aacagatgct tctcactagg gtacttcccg agatcatgga      1740
     aacgtgcaga agtcattctc atcctcaaac ctggaaaacc tgaagccaat cttgcctcat      1800
     atagaccgat tagtctgctg acaatcctct ccaaaatact cgaaagagta tttctgcgca      1860
     gagtcatgcc agtactggac gaggctggac tgatccctga tcaccagttt ggcttcaggc      1920
     gatcccacgg aacacccgag caatgccacc ggctcgtagc acgcatccta gatgcattcg      1980
     agaacaaacg atactgttcg gccgtattcc tggatgtcaa gcaggcgttc gacagagtgt      2040
     ggcatcctgg actcctctac aaactcaagt cccaccttcc cagttcccac tatgccctac      2100
     tcaaatcgta tactgaagga agagagttcc aagtgcgatg cggttcctca acaagcacga      2160
     caaggcctat acgagccgga gtacctcaag gcagcgtcct tggtcccatc ctctacaccc      2220
     tgtttacagc agacctccct atcataccct cccgttacct cacagcagcc acctatgcag      2280
     atgacacggc gttccttgcc accgcaacaa accctcaatt agcatcagcc atcatccaga      2340
     ggcaactgga tgcactggat ccatggctga aacgctggaa catcatgatc aacgctgata      2400
     aatcctccca caccaccttc tctctgcgca gaggagaatg ccccccggtc tcactcgacg      2460
     gcgacacaat ccctacctcc agcaccccca aatatttagg gctgacccta gacagaaggc      2520
     tgacttgggg cccccacatc aacaataagc gtatccaggc caacatacgc ctaaagcaac      2580
     tccactggct catcggtaaa aagtccaagc tgcgagagaa actaaagatt ctcgtctaca      2640
     agactattct caagccaatc tggacgtacg gaattcagct gtggggcact gcttgcacat      2700
     cacatagaag gaagatccag cgatttcaaa acagatgttt gagaatagtc tccaacgccc      2760
     atccctacca cgaaaattcc gccatccacg aggagctcgg gattccatgg gtagacgacg      2820
     aaatctacag acacagcgtg agatatgcta gcagactgga gaaccaccac aaccacctgg      2880
     ccgtcaacct tctagaccac agccaatccc taagacgcct gcagagaacg cacccgcttg      2940
     accttactca acatacttaa tcatacttaa cccctaccca agtacactcg atgtactccc      3000
     cttaagttaa tgtttccctc caaaaaattt aattattgtc cactaggaca gattttaaat      3060
     aataaataaa aggctacaaa aaaaaaaaaa aaaaaaaaaa aa                         3102
//
ID   DM412       repbase;    DNA;    INV; 6897 BP.
XX
AC   X03733; X04132;
XX
DT   22-DEC-1995 (Rel. 2, Created)
DT   22-DEC-1995 (Rel. 2, Last updated, Version 1)
XX
DE   Drosophila retrotransposon 412 genome.
XX
KW   LTR; retrotransposon; reverse transcriptase; DM412.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6897
RA   Yuki S., Inouye S., Ishimaru S., Saigo K.;
RT   "Nucleotide sequence characterization of a Drosophila
RT   retrotransposon, 412.";
RL   Eur. J. Biochem 158(2), 403-410 (1986).
XX
RN   [2]
RP   2876-5575
RA   Yuki S., Ishimaru S., Inouye S., Saigo K.;
RT   "Identification of genes for reverse transcriptase-like enzymes
RT   in two Drosophila retrotransposons, 412 and gypsy; a rapid
RT   detection method of reverse transcriptase genes using YXDD box
RT   probes.";
RL   Nucleic Acids Res 14(7), 3017-3030 (1986).
XX
DR   GenBank; X04132; Positions       1    6897.
XX
CC   repeat_region 1..310
CC   /note="long terminal repeat (LTR)"
CC   promoter 148..154
CC   /note="pot. TATA-box"
CC   misc_feature 168..172
CC   /note="pot. RNA1 start site"
CC   misc_feature 184..188
CC   /note="pot. RNA2 start site"
CC   misc_feature 238..243
CC   /note="pot. polyA signal"
CC   misc_feature 311..325
CC   /note="primer binding site (tRNA binding site)"
CC   CDS 442..825
CC   /note="ORF 1 (RNA1) (aa 1-128)"
CC   CDS 1130..1444
CC   /note="ORF 2 (RNA2) (aa 1-104)"
CC   CDS 1599..2963
CC   /note="ORF 3 (RNA1) (aa 1-455)"
CC   CDS 2876..6586
CC   /note="ORF 4 (RNA2) (aa 1-1237)"
CC   misc_feature 6788..6897
CC   /note="long terminal repeat (LTR)".
XX
SQ   Sequence 6897 BP; 2760 A; 1212 C; 1180 G; 1743 T; 2 other;
     cattcacacg ccgaccaaat acatattaca tacgtacata catatctcgc tctcccgata        60
     agcctagata tataagatat acataagaac gccgctccgc tgctggcgta cccggcacgc       120
     agctacgcgg attagcctaa gtccaaatat ataaaaaact gtaaaatcag agagactctg       180
     tagacgttga gctgacagaa ccatttctgc ctactctaaa atcaaaagaa gaaattgaat       240
     aaatatatgt cagcccgacg gtcttcaact taaaacggac ttgtgttctt aattggagtt       300
     catcattaca tggcgaccgt gacagnntcc aacgctggac gaattgacca aagctggtga       360
     aaacaaagga acaaaggaac actggactgg aagaagactg gactaattaa atggaactgc       420
     aaaaaccaag gaaaaatctg agtgagtaga gttctattga gtatgggcaa acaccgtggc       480
     ggtttgaaaa ctaagctgaa taaacgtata gcccacgtaa ggtggctaat atacggtcag       540
     caaacgccac cggtttggtc gaaagctcta aagctacatg cagagctaga ccacttgttg       600
     caatatcagc aagaattaaa gacccataag ctcgagaaaa ctcactcaga taatattaaa       660
     aatataccca caattaatga agttccaaaa taccaggcat gtccagcacc agcaccagca       720
     ttaacaaaac caaagaagtc ctgcccccct ggctgcgaag gaatctggag tccccactgc       780
     ctggggactt gtgagcgacc atcgacgtct tcagcggcga agaaatagac agcagcgagg       840
     gagtgtcagc gtgccacccc ggcgacgccc agctgacacc tgatagagca tcatcaacag       900
     cagaatataa taataaatat atataaatat aaagtaaata taaaatatat atagataaga       960
     aaaattgtaa gaaatattgt aaaacggagc atatactatt atgccctgtt aacccaatat      1020
     ggcccgtgaa gccatagcta gaatcaggca ggcaacaatg taaaatacaa tttttttttt      1080
     actcttgcga acattgaaag attttataaa tagataattc caaacataaa tgtctataga      1140
     gacaaatgaa ataagtaaaa ctgaaaataa aagtatatac aaaggaaatt ttctattcta      1200
     ttctccaaaa tataaaatta gtatacccaa aatgggtcta atagacacta aaactgtgga      1260
     ctctacagcc aatgtaataa ataaagtaga agtccaaaat gcagacttgt tctggataac      1320
     cataatacta attgtaattg cattaattat ggtatccaat gcattaataa aaatatacaa      1380
     actgcataac aagtgtctta agaaacgata ccgtagcact gctaacggta tagataatat      1440
     ttaaggaaga tctttaataa agtcaattat gaatgaaaat atgagaaaaa ttatatgaaa      1500
     aaaaaaaata ataaataaaa aaaaaatata aaacgtaata ttgaatttat ctacattaaa      1560
     aaaaaaatat atacaaatga ataaatttga agttatgagt ataccacagc atggactggg      1620
     aaaagcttgt tgatcagata aaagatcaaa atgaaaattt cagaaaatcc tataagtgct      1680
     taacgcaaaa cagatcaaca caagctgtaa caatcaatag gaatgcccaa gtcttggtaa      1740
     atagttataa tgaaatcaga gagttgatcc aacaaaatag aaagaatttg gaacgcaaac      1800
     agtgtgctaa ggctttgaac ctactggtga cattaagaga aaaattaata tttataaaaa      1860
     ataaattcag tctccagata gaaattccaa ccatagtaaa caccccacta agaataaatt      1920
     tgaatgaaga cagcactaac tctgacgagg aagataggac tatagtcaag gaagacatta      1980
     aagaggaaga tcttcacgat ctaactatac cagcaaaatt aatgctgaag aacgacgata      2040
     aaacaaataa cgcagccgac tccgaaaata acttaaccat ggcagaagaa gcagctgcca      2100
     ttaggtctta cattagggaa gtcgcctgca cagtgccaga atttgatggg caaaagatcc      2160
     atttacaaag attcattaag gcaatcaaat tggtagacct agctaaggga ccatttgaag      2220
     acattgcagt tgaggtcatt aagtcaaaaa tagttggcac aattttgaac tcagttgaca      2280
     atgaaacgac aattccagca attataaaca aattgcagaa agtagttgtc ggtgagacat      2340
     ccagtaatgt caaagcaaag ctagcaacag ttcagcagag aggtaaaact gcaacgcaat      2400
     ttaccgctga agttgatagc ctgagaaaac ttttagaagc ttcctatatc gatgagggta      2460
     tacctctaga acatgccact ggtctaagca ccaaagaggc aattgaaacc atgatacatc      2520
     gtgctgagca cgaaagtatc aaaacagtac tggaagcagg gacttgcacc actatggatg      2580
     cagcgataag cgcatacata agaacgagta caagagttac cggtgacatc aataaagtga      2640
     tgtactttag aggtaacaga cccaatagag gatacggaaa tgccaataga ggtagtaacc      2700
     gccgtagagg ctttaataac aatagtatta gaggcaacta ccataacggt taccaaaata      2760
     acggttacca aaataacggt taccagaata acggttatca aaaccgctat aatggaaata      2820
     ataaccgtta taatggctat aacagaggcc gttataatgg aaacagaggc cgtaacaaca      2880
     gtcagaacaa ctacaacaga aacaatgcca atgtacgagt aatccaagaa cagggcaact      2940
     cgcaacagcc tttaggtact cagtagaaga agatcgtaga gtatacacca tcaattataa      3000
     tctcaacata ttttctacat tcattcatgc caaaacaggc gtaaaactag tttttctact      3060
     tgatacaggt gcagatatct ctattctcaa agagaactct gacaaatttt ctaatattca      3120
     aataaccaat aaaataaaca ttcaaggcat aggccaacag aaaattcagt ctcgaggaca      3180
     gacttttatt gagatacaga caggtaaata cgttatccca cacgattttc atttagtaga      3240
     taaaaacttt ccaataccgt gtgatggaat aatcggaata gatttcataa aaaaatataa      3300
     ttgccaaatc gatttaaacc aagaagaaga ttggtttata attagaccaa acaatttgaa      3360
     atttccaata tatattccca tagcatacag ctctggtatt aacacaacgt tattaccagc      3420
     aagatcccaa gttgtccgaa gattaatagt atcatcaaaa gatgataaca ttttaattcc      3480
     aaaccaggaa attcaaactg gtatttatgt tgcaaataca atcgcaacat caagtaatac      3540
     atttgtccga attttaaata caaccgattc cgaccaatta gtcaatatgg acactctaaa      3600
     atatgagcca ctttcgaact acaatgtagt tcaggcaaat agtgaacaca gaaataaaac      3660
     tgtcttatct caattaaaga aaaatttccc cgaattgttt aaatcacaat tagaaaatat      3720
     atgcagcgaa tatatagata tatttgcatt agaatcagaa cctataacag ttaataattt      3780
     gtataaacaa cagttgagat taaaagatga tgagccagta tacacgaaaa attatagaag      3840
     tcctcatagt caagtggaag aaatacaagc ccaagttcag aaattaataa aagataaaat      3900
     agttgaacca tcagtttcac agtacaatag ccctttgcta ttagtaccca aaaagtcaag      3960
     cccgaattct gataaaaaga aatggagatt agtaatagac tatcgccaaa ttaataagaa      4020
     acttttagct gacaaatttc cactaccgag aatagatgat attttggacc aacttggtcg      4080
     agcaaaatat ttctcctgcc ttgatttaat gtcaggtttt catcaaatcg aactggatga      4140
     aggctcgaga gatataacat ctttctcaac cagcaatggc tcatatcgtt tcacgcgatt      4200
     gccatttggc ttaaaaatag cgcctaattc attccaaaga atgatgacta tagcattctc      4260
     cggaatagaa ccgtctcaag cattccttta tatggatgac ttaatagtca taggttgttc      4320
     cgaaaaacat atgcttaaaa acctcactga agtttttggt aaatgcaggg aatacaacct      4380
     aaagttacat cctgaaaaat gttcattttt catgcatgaa gtcacatttt tgggacacaa      4440
     atgcacagac aaaggaattt tgccggatga caaaaaatat gatgtcattc agaactaccc      4500
     agttccacat gatgcggaca gcgctagacg ttttgtagca ttttgcaatt actacagacg      4560
     ttttatcaaa aatttcgccg actattcgcg gcacataaca agattatgta aaaagaatgt      4620
     tccattcgag tggacagatg aatgtcaaaa agcattcata catttaaaat ctcagctaat      4680
     taacccaaca ctcttgcagt acccagactt cagcaaagaa ttttgcataa caacagatgc      4740
     aagcaagcaa gcgtgtggcg cagttttaac tcaaaaccat aatggccacc aactcccagt      4800
     tgcttatgca tccagagctt ttacgaaagg tgaaagcaat aagagtacaa cagaacaaga      4860
     gttagcagca attcattggg caataataca tttcagacca tacatttacg gaaaacattt      4920
     cactgtgaaa acagaccata gaccattgac atatttattc tcgatggtga accccagctc      4980
     taaattaact agaataaggc ttgaactaga ggaatataat tttacagtag agtatctaaa      5040
     gggcaaggac aatcatgtag cagatgcgtt atcaagaata accatcaaag agctaaaaga      5100
     tataactgga aatatattaa aagtcactac aagatttcaa agtagacaaa aatcctgcgc      5160
     aggaaaagaa caattggatt tgcaaaagca aaccaaagaa atagcttcag agcccaacgt      5220
     atacgaagtc ataacaaatg acgaggtacg aaaagtagtg acattgcaat tgaatgactc      5280
     gatatgttta tttaaacatg gaaagaaaat tattgcaaga tatgatgttg gtgatcttta      5340
     tactaatgga attcttgatt tagatcaatt tctccaaagg cttgaattgc aggccggtat      5400
     atatgatatc agccaaatca aaatggcacc gtggaaaaaa atctttgaac acgtttcaat      5460
     agataaattt aaaaatatgg gcaataaaat attaaagaat ttaaaagtag cgctacttaa      5520
     cccggtgacc caaataaata atgaaaaaga aaaagaagct atattgtcta cattacatga      5580
     tgatccaata caaggagggc atacaggcat tacaaaaacc ttggccaagg tcaaaagaca      5640
     ttattactgg aaaaatatga gtaaatacat aaaagagtac gtaagaaaat gtcaaaaatg      5700
     ccaaaaagca aaaacaacaa agcacacaaa gactccaatg acgataactg aaacaccaga      5760
     acatgctttc gatagagttg ttgtggacac aattggtcca ctacccaagt cagaaaatgg      5820
     taacgagtac gcagtcactc tcatatgtga tttaaccaag tacttagttg ccataccaat      5880
     agcaaataaa agcgcaaaaa cagtcgcaaa agctatattt gaatctttta ttctaaagta      5940
     cggtccaatg aagacgttca taacggacat gggaacagag tataagaatt caataattac      6000
     tgacctgtgt aaatatttga aaataaaaaa tataacatca acagctcatc accaccagac      6060
     agttggagta gtagaaagaa gtcatagaac tttaaacgag tatatacgat cctacatatc      6120
     gacggacaaa accgattggg acgtatggct tcaatatttc gtatactgct tcaacacgac      6180
     ccaatctatg gtacataatt attgtccata tgaattagtt ttcggtagaa caagtaattt      6240
     accaaaacat tttaataaac tacatagcat agaaccaata tataacatag atgattacgc      6300
     taaggagagt aaatataggt tagaggtagc atatgctcga gcaagaaaac ttcttgaagc      6360
     acacaaagaa aaaaataaag aaaattatga cttaaaagta aaagacatag aattagaagt      6420
     aggagataaa gttttactaa gaaatgaggt aggtcataaa ttagacttta aatatacggg      6480
     gccctataag atagaaagca taggagataa taacaatatt acgctactta ctaataaaaa      6540
     caaaaaacaa atagttcata aagatagatt aaagaaattt cattcatgat tgaatttaaa      6600
     cttatatttt ccttaatcat ttatacaaat tttccataca ctacgtatat ttttatcttt      6660
     gcattataaa atcaactatt gttgttcaaa caaaaacaca aacaaaataa aaataaaaat      6720
     aaaataattt gcatttaata atcaaaataa cttcactagg ttacgttatt tttcaaaagg      6780
     agggagatgt agtatgtgcc tatgcaatat taagaacaat taaataaaat agcatattaa      6840
     cttatggcag cactttgttg ctatgtttat gtttatgttt atgcacgcag ttaggcc         6897
//
ID   LTRBLD_DM   repbase;    DNA;    INV; 400 BP.
XX
AC   X04671;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Drosophila blood transposon LTR.
XX
KW   Long terminal repeat; retrotransposon; Blood transposon LTR;
KW   DMBLDLTR; LTRBLD_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-400
RA   Bingham M.P., Chapman H.C.;
RT   "Evidence that white-blood is a novel type of
RT   temperature-sensitive mutation resulting from
RT   temperature-dependent effects of a transposon insertion on
RT   formation of white transcripts.";
RL   EMBO J 5, 3343-3351 (1986).
XX
DR   GenBank; X04671; Positions     140     539.
XX
SQ   Sequence 400 BP; 110 A; 88 C; 89 G; 113 T; 0 other;
     tgtaataaac caatatatgc caccaattga gaacacgtgt tttccttgca gttgggtgca        60
     gccgtcaggc caccttttta tttcttctta tctcttcgag tagcagaaac ggttctgccc       120
     cgcttaacct ctacagagtg tctaatctta cctaaatact gcgactgcgc cgccgtcgac       180
     agcggcagaa gagcagcgta tatatatatg tataagagag agagagagag agcttatgcg       240
     catatatggc cagcggccag cgtggggatg ctgacttagc ttaaagcata aatgggtgat       300
     cttatatcac gctcacttga gacatttatt tatgcaatgc aactaagtgt tgctgtgtac       360
     ttataggtac agtgtaccct cgatatatgc acatactaca                             400
//
ID   LKRP1       repbase;    DNA;    INV; 215 BP.
XX
AC   L42500;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Leishmania killicki DNA repeat.
XX
KW   Repetitive element; LKRP1.
XX
OS   Leishmania killicki
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-215
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42500; Positions       1     215.
XX
SQ   Sequence 215 BP; 52 A; 68 C; 64 G; 31 T; 0 other;
     gcaagaatca agaggcagtg tcacagagat gcgcgaaggg ggacggtggg agcgggagag        60
     agaccgcggg cacgtggcga cgtccgtgga accaaaaaaa agcagaagac gagtattccc       120
     ttttgctgat gtgtgaccac ctctctgcca cagatcacga gctcagctcc cctccaccct       180
     aacgcctccc ccgcgcggcc ctgtcacagg ctccc                                  215
//
ID   RCD1        repbase;    DNA;    INV; 359 BP.
XX
AC   X61258;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   C.elegans RcD1 repetitive DNA.
XX
KW   Repetitive DNA; RCD1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-359
RA   La Volpe A.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (16-AUG-1991)A. La Volpe, CNR
RL   International Institute of Genetics and Biophysic, Via Marconi
RL   10, 80125 Naples, ITALY.
XX
RN   [2]
RP   1-359
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence
RT   in Caenorhabditis elegans.";
RL   Unpublished.
XX
RN   [3]
RP   1-359
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226, 159-168 (1992).
XX
DR   GenBank; X61258; Positions       1     359.
XX
SQ   Sequence 359 BP; 90 A; 120 C; 89 G; 60 T; 0 other;
     gggtctcacc acgaagggtc tcaccacgaa gggtctcacc acgattggtc tcaccacgac        60
     gggtctcacc acgaaaggtc tcaccacgat tggtctcacc acgaagggtc tcaccacgaa       120
     gggtctcacc acgatgggtc tcaccacgaa gggtctcacc acgaagggta tcaccacgat       180
     gggtctcacc acgaagggtc tcaccacgat tggtctcacc acgaagggtc tcaccacgaa       240
     aggtctcacc acgattggtc tcaccacgaa gggtctcacc acgaagggtc tcaccacgat       300
     gggtctcacc acgaagggtc tcaccacgaa gggtctcacc acgatgggtc tcaccacaa        359
//
