ID   RLTR19_MM   repbase;    DNA;    ROD; 467 BP.
XX
AC   .
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR19_MM.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-467
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR19_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2(9), 4-4 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 467 BP; 139 A; 67 C; 163 G; 98 T; 0 other;
     tgccccagag ggacaaaggg cagggaataa gagacaaaga caggagatag aggatgaggg        60
     agaaggggaa gggaacaagg gagaggggga agggatattt gtcctggagg acaaaggact       120
     gcctctggat agagaggaga cagacgtggc acataggaaa atggtagttt ataaaggtaa       180
     aaggggaaac cctgtgttag gatgaggtgt ttaattttaa ttgggcatgt taattaggtg       240
     agccaaaggg ggcttttgat tgctggactt caatactttg atagctggac cttggtagtc       300
     agcctcagga ggaggaagtg gccaaataag ggaatagacc ttggtggcta gctttaggaa       360
     tgtaatctaa tggtttttag caaggcagag ggaatggggg agaagggcaa ggcctgcggc       420
     ctgccagagc catgtttgcc atgctcaggc tggctagagt cccttca                     467
//
ID   GOLEM       repbase;    DNA;    ROD; 3029 BP.
XX
AC   .
XX
DT   13-JAN-1998 (Rel. 3, Created)
DT   31-OCT-2000 (Rel. 5.09, Last updated, Version 6)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   DNA transposon; Interspersed Repeat; 35S; GOLEM; MER17; MER29;
KW   MER7; MER7B; TIGGER3.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2724
RA   Drinkwater D.R., Burgoyne A.L., Skinner D.J.;
RT   "Two human repetitive DNA elements: A new interspersed repeat
RT   found in the factor IX gene, and a satellite 11 tandem repeat
RT   sequence.";
RL   Nucleic Acids Res 14, 9541-9541 (1986).
XX
RN   [2]
RP   1-2724
RA   Kaplan J.D., Duncan H.C.;
RT   "Novel short interspersed repeat in human DNA.";
RL   Nucleic Acids Res 18, 192-192 (1990).
XX
RN   [3]
RP   2713-2608
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [4]
RP   2327-2128
RA   Skalnik G.D., Strauss C.E., Orkin H.S.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem 266, 16736-16744 (1991).
XX
RN   [5]
RP   2787-2607
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328 (1993).
XX
RN   [6]
RP   2327-2128
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [7]
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [8]
RP   1-3029
RA   Kapitonov V.V., Jurka J.;
RT   "GOLEM.";
RL   Direct Submission to Repbase Update (JAN-1998).
XX
RN   [9]
RP   1-3029
RA   Smit A.F.;
RT   "GOLEM.";
RL   Direct Submission to Repbase Update (JAN-1998).
XX
CC   23 bp terminal inverted repeats and TA target site [7].
CC   GOLEM's non-autonomous elements are GOLEM_A (MER7A) and GOLEM_B
CC   (MER7B) repeats.
CC   Orientation of the repeat has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [8].
CC   The ORF from pos 442-2307 encodes a protein 39% identical (57%
CC   similar) over the full-length to the Tigger1 product.
XX
SQ   Sequence 3029 BP; 968 A; 580 C; 659 G; 820 T; 2 other;
     cagtcatgcg ccgcataacg acgtttcggt caacgacgga ccgcatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgtcgt agctgtcgta       120
     acgtcatagc gcaacgcatt actcacgtgt ttgtggtgat gctggtgtaa acaaacctac       180
     tgcgctgcca gtcgtataaa agtatagcac atacaattat gtacagtaca taatacttga       240
     taatgataat aaatgactat gttactggtt tatgtattta ctatactata ctttttatcg       300
     ttattttaga gtgtactcct tctacttatt aaaaaaaagt ttactgtaaa acagtatgcc       360
     gtgttacacc ggcagcagcc tcatacatct cgtgtttacc gcgtctcttg attgcatcat       420
     tttctcttgt gcttgattta atctcgtgtt gttttgttca tcatggcccc taagcgtaca       480
     aaatccacgg ctaatgttgc cagtaagagg ccacatcgag tgactgacct ggaaacgaaa       540
     ttaaaagtga ttaaggacta cgaaggtgga aaatcagtga tggttattgc tcgccagtca       600
     ggcatgtccc attccaccat agctacgatc ttgaagaaca agaacaaagt gacagaagct       660
     gttaaaggat ctgcttcatt gaaggcaacg agactaacaa aaattcgaga agggcctata       720
     tcagatatgg agaaacttct aatgacctgg attgaagacc agacacagaa gcatatccct       780
     ctcagcacca tgacgatcac ggccaaagca aaaagtttgt ttgcgatgtt gaaagaaaag       840
     gctggacccg actacgatgt tgaatttact gctagctctg ggtggtttaa acgattcaag       900
     aatcgttatt cattacataa tgtgaaagtg agtggtgagt ctgcgagtgc tgatgtgaag       960
     gcagctgaag aatttttgga aactctagat aagctgattg tggaggaaaa ttacttgcca      1020
     gagcaaatct tcaatatgga tgaaacctcc ctattctgga aacggatgcc tgaaaggact      1080
     ttcatccata aggaggccaa gtcaatgcca ggtttcaagg cttttaagga caggataaca      1140
     gtcttgcttg ggggcaatgt tgcaggctac aaattgaaac cctttgtgat ctggcacagt      1200
     gagaacccca gggccttcaa gcatatcaat aagcacacac tgccagtgta ctacaggagc      1260
     aataagaagt catggatgac ccagctcctc ttccaagatg ccctcctgaa ttgctatgcc      1320
     agcgaaatgg agaagtactg tttggagaat aacatacctt tcaagatttt gcttattgtt      1380
     gataatgctc ccgcacatcc tccttttatt ggtgatcttc atcccaatat caaagtggtg      1440
     tttctccctc caaacaccac ctctttgatc caaccaatgg atcaaggagt tatagcagct      1500
     tttaaggcct actacctgag gaggaccttt gcccaggcta ttgctgcaac tgaggaagac      1560
     actgagaaga cactgatgca attctggaag gattacaaca tctatgactg catcaagaac      1620
     cttgcttggg cttggggtga tgtcaccaag gagtgtatga atggcatctg gaagaagaca      1680
     ctcaagaggt tcgtccgtga cttcaaagga tttgccaagg atgaggaggt tgcaaaaatc      1740
     aacaaggctg tggttgagat ggcaaacaac tttaacctgg gtgtggatga ggatgacatt      1800
     gaggagctcc tagaggtggt tcctgaggaa ttgactaatg aggagttgtt ggaactggaa      1860
     caggaacgca tagctgaaga agaggcaaga gaaaaggaaa ctgcaggaga agaaaaagaa      1920
     gaacccccaa gaaaattcac agtgaagggt ttagcagaag cttttgcaga cctcaacaag      1980
     ctccttaaaa agtttgaaaa catggacccc aacaccgaaa ggttttcatt aatagagagg      2040
     aatgttcatg gtgcattatc tgcttacaag caaatctatg atgaaaaaaa gaaacaaacc      2100
     aagcaaacca ccatggacat atttctgaaa agagtgacac ctcctcaaga agagcctcag      2160
     gcaggtcctt caggaggtat tccagaagaa ggcattgtta tcataggaga tgacagctcc      2220
     atgcgtgtta ttgcccctga agaccttcca gtgggacaag atgtggaggt ggaagacagt      2280
     gatattgatg atcctgaccc tgtgtaggcc taggctaatg tgtgtgtttg tgtcttagtt      2340
     tttaacaaaa aagtttaaaa agtaaaaaaa aaataawttt aaaaatagaa aaaagcttat      2400
     agaataagga tataaagaaa gaaaatattt ttgtacagct gtacaatgtg tttgtgtttt      2460
     aagctaagtg ttattacaaa agagtcaaaa agttwaaaaa attaaaaagt ttataaagta      2520
     aaaaagttac agtaagctaa ggttaattta ttattgaaga aagaaaaata ttttaaataa      2580
     atttagtgta gcctaagtgt acagtgttta taaagtctac agtagtgtac agtaatgtcc      2640
     taggccttca cattcactca ccactcactc actgactcac ccagagcaac ttccagtcct      2700
     gcaagctcca ttcatggtaa gtgccctata caggtgtacc attttttatc ttttataccg      2760
     tatttttact gtaccttttc tatgtttaga tatgtttaga tacacaaata cttaccattg      2820
     tgttacaatt gcctacagta ttcagtacag taacatgctg tacaggtttg tagcctagga      2880
     gcaataggct ataccatata gcctaggtgt gtagtaggct ataccatcta ggtttgtgta      2940
     agtacactct atgatgttcg cacaacgacg aaatcgccta acgacgcatt tctcagaacg      3000
     tatccccgtc gttaagcgac gcatgactg                                        3029
//
ID   GOLEM_B     repbase;    DNA;    ROD; 1205 BP.
XX
AC   .
XX
DT   25-FEB-1998 (Rel. 3.01, Created)
DT   31-OCT-2000 (Rel. 5.09, Last updated, Version 4)
XX
DE   Nonautonomous DNA transposon.
XX
KW   DNA transposon; Interspersed Repeat; Nonautonomous; 35S; GOLEM;
KW   GOLEM_B; MER17; MER29; MER7; MER7B; nonautonomous DNA transposon.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-944
RA   Drinkwater D.R., Burgoyne A.L., Skinner D.J.;
RT   "Two human repetitive DNA elements: A new interspersed repeat
RT   found in the factor IX gene, and a satellite 11 tandem repeat
RT   sequence.";
RL   Nucleic Acids Res 14, 9541-9541 (1986).
XX
RN   [2]
RP   1-944
RA   Kaplan J.D., Duncan H.C.;
RT   "Novel short interspersed repeat in human DNA.";
RL   Nucleic Acids Res 18, 192-192 (1990).
XX
RN   [3]
RP   932-825
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [4]
RP   546-326
RA   Skalnik G.D., Strauss C.E., Orkin H.S.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem 266, 16736-16744 (1991).
XX
RN   [5]
RP   1004-824
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328 (1993).
XX
RN   [6]
RP   79-546
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [7]
RP   1-1
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [8]
RP   1-1205
RA   Kapitonov V.V., Jurka J.;
RT   "GOLEM_B.";
RL   Direct Submission to Repbase Update (1998)..
XX
CC   Replaces MER17, MER29, MER7B.
CC   Differs from GOLEM and GOLEM_A by internal deletions.
CC   23 bp terminal inverted repeats, TA target site [7].
CC   Orientation has been changed based on the reconstruction
CC   of GOLEM internal sequence [8].
XX
SQ   Sequence 1205 BP; 386 A; 208 C; 217 G; 367 T; 27 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagnctc aggcaggtcc       360
     ttcaggagat attccagaag aargcatcgt tatcatagga gatgacagct ccatgcatgt       420
     tattgcccct gaagaccttc cagtgggaca aaatgtggag gcggaagaca gtgatattra       480
     tgatcctgac cctgtgtagg cctaggctaa tgtgtgtgtt tgtgtcttag tttttaacaa       540
     aaatntttta aaaaataaaa aaatwaaaaa tttwwaaata gaaaaaagct tatagaataa       600
     ggatataaag aaagaaaata tttttgtaca gctgtacaat gtgtttgtgt tttaagctaa       660
     gtgttattac aaaagagtca aaagttaaaa atgcaaaagt ttataaagta aaaaagttac       720
     agtaagctat ggttaattta ttgctgaaaa arwwwwwwww wwwwwataaa wttagtatag       780
     cctaagtgta cagtgtttat aaagtctaca gtagtgtaca gtaatgtcct aggccttcac       840
     attcactcac cactcactca ctgactcacc cagagcaact tccagtcctg caagctccat       900
     tcatggtaag tgcyctatac aggtgtacca ttttttatct tttataccgt atttttactg       960
     taccttttct atgtttagat acacaaatac ttaccattgt gttacaattg cctacagtat      1020
     tcagtacagt aacatgctgt acaggtttgt agcctaggag caataggcta taccayatag      1080
     cctaggtgtg tagtaggcta taccatctag gtttgtgtaa gtacactcta tgatgttcgc      1140
     acaacgaaat tgcctaatga cgcatttctc agaacgtatc cccgtcgtta agcgacgcat      1200
     gactg                                                                  1205
//
ID   MEN         repbase;    DNA;    ROD; 269 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   SINE2 SINE from Menetes.
XX
KW   SINE2; SINE; Non-LTR Retrotransposon; Interspersed Repeat; MEN.
XX
OS   Menetes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Sciuridae; Sciurinae.
XX
RN   [1]
RP   1-269
RA   Smit A.F.;
RT   "MEN - SINE2 SINE from Menetes.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Groundsquirrel.
XX
SQ   Sequence 269 BP; 82 A; 63 C; 73 G; 46 T; 5 other;
     gggctggaga wgtggctcag ccggtagagc gcttgccttg caagcgtgag kcstgggttc        60
     nattccagac acatgcawat caatgcctga aagaaagctc atcaaccact aatatacata       120
     aaaatgagct gggcgtggtg gcgcacgcct gtaatcccag cagctcggga ggctgagact       180
     ggaggatcgc cgagttcaaa gccacctcag cagaaataag cgaggtgcta aagcagctca       240
     gtgagaccct gtctcaaaaa aaaaaaaaa                                         269
//
ID   IAPEYI      repbase;    DNA;    ROD; 7513 BP.
XX
AC   X87638;
XX
DT   19-NOV-1998 (Rel. 3.1, Created)
DT   19-NOV-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   An internal portion of IAPE-Y LTR-retroelement.
XX
KW   LTR Retrotransposon; Interspersed Repeat; gag; retrovirus; pol;
KW   env; IAPE-Y; IAPEYI; LTR-retroelement.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-7513
RA   Plumb A.M.;
RT   "IAPEYI.";
RL   Direct Submission to Genbank (30-MAY-1995)M.A. Plumb, MRC
RL   Radiobiology Unit, Chilton, Didcot, Oxon OX11 0RD, UK.
XX
DR   GenBank; X87638; Positions     390    7902.
XX
CC   This is an internal portion of IAPE-Y retroviral element. Its
CC   LTR is deposited in RepBase as LTRIAPEY.
XX
SQ   Sequence 7513 BP; 2222 A; 1569 C; 1692 G; 2030 T; 0 other;
     agtggtgcca aaacccggga actgtcatca caccagcgca aggaagaccc tcattcacgg        60
     ggcagaatca gaactgtggg acaaaaggct ctacaaggta cgtacaatct tgaaatttct       120
     ccagagttag aagccctttt gattgtttgc atggcgatta cgcttttcct tttggtttcg       180
     ttttgtttcc accactggaa ctgttgactg tttcttagtc gcagtcagtc ctggacagcg       240
     cctggacagc aaccaatttc aggcccggtc aggcctggac agcggcagta tgggaatctc       300
     ccattctata gtagtgggct tacgctcagt cctgaagcag tgtggcctaa aaatcgccac       360
     taagacctaa gagggatttg tcagagagat agaccgtgtt gcaccatggt atgcttgctc       420
     attgtcatta actgtcgcct cttgggacaa actgaaagga gatctagtta ggaaacagca       480
     gaatggcaaa cttaaagcag ggattatgct gctatgaaat tggtgaaatc atgtttaaca       540
     gatgaggatt gtcagcaaat gttagaagca gggcagaaag ttctggacga aattcaagaa       600
     agtctatcag aggtagatca gggagagaga gtaaaaatag agaggaaaca aagtgcactg       660
     aagaatttag gcctttccat gagccttgag accgaggaaa agagaatgtc agggaaaata       720
     cctggggaga gattagaaaa agggatggaa agggagagaa gaagggagat cgagctggag       780
     aggcacataa ggaaagaagc ctctacccac cactagatga gtttaagcag ctagctgtca       840
     gtagctcaga atcagataag gaacttagct cctatgagga aacagactta gagaagaagc       900
     gacaggttgt gagggagaaa gataccagtc agatgaaaga cgagttaatc agttacagat       960
     aacatgaaag cagctagaga caaatgtcaa atcattgcgc agtcttcgga tatgcaaatt      1020
     cagggttcta gtgcacctcc gccttatgtg cagaggcacc attctgagcc ttatgtgcag      1080
     aggtatcatt cagactcatt tatactaaaa gaggaacaga ggaagataca acaggcattt      1140
     ccagtttttg aaagagctga gggaggggct gttcacgctc aagtagaata tatacagatt      1200
     aaggagcttg cagaaacagt ccgtgttatg gagtcagagc taatttcact gtagcacaag      1260
     ttgaaaggct tgcaactcac actatgactc ctggtgattg ccagactgta gtaaaagctg      1320
     cagcccccag tatggggatg tatcttgaat ggaaagtttt gtggcaggac tcctgtcaga      1380
     cgcaggcaag ggccaatgcc accatggaag gaaaccaaag gacatggaca tttgaattgc      1440
     ttacaggtca gggacagcat gctgctaacc aaacagatta ttattgggga gcatacgccc      1500
     agatctcagc tgccgctgtt aaggcatgta aggcactctc taagaaggga gaggcaagtg      1560
     ggcatttgac caagatcatt caggtctacc aggagtcata ctcaattttt gtggctagaa      1620
     tgacagaggc agcagggaga tattttgaga tacaaaagca gctatgcctt taattgaaca      1680
     gttgatatat gaacaggcta cccaggaatg cagggcagct attacacctg gaaaaagcaa      1740
     gggactgcag gactggtcga aggtttgccg tgaacttggt gggccactca ctaatgcagg      1800
     tttagcagct gccattctac aagtgcaaaa atgccctgac atggctgagc tcaaactctg      1860
     ctataacgtg gcaaaccggg acacttaaaa aaggactgta gagcccttga taaaaggaga      1920
     gtaccaggat tgtgcactaa gtgtggaaaa ggatatcatt gggctagcgc ttgtcgttca      1980
     atcagggaca ttcgaggcag gctcctgcag ccaggattcc ctcaagcagt agataatgac      2040
     accatttcaa aaaaccatta cagggccctc aggtcttagg gccgaaaaca tacggaccac      2100
     gacaggcgaa aggtggagcc cacagtccgc aggcaacaga aggctcagct ggattggacc      2160
     tccgtaccac cacccaattc atcgtgatcc tcaaatggga gagcagccta ttcctactga      2220
     ctctaaagga cctctgccac tcctgggagt gtcggcctaa tattgggcag ggcttccctt      2280
     acactacaag gtcttattgt tcaccctgga gatgtaggtc aagattatga agggggactt      2340
     caagttctct gttcctgtcc tcagggtgtc gtttctattt cacaaggaga tagaatagct      2400
     cagttagtaa ttcagccaag cctacatggc tgttttccct cttctggtgt ccctcaagct      2460
     accagaggga ttggttctac tggaaatgat tcggcctatt taattatgcc tttagattcc      2520
     aggccttctt tagagttagt tatagaaggg aaacaattta aggggatttt aggcacagca      2580
     gcagacaaaa gtattatttc ttctcactgg tggccgaaaa cttggccagt tattcagtca      2640
     tcacattctt tgcaaggttt cggttatcag tcctgtccca ctattagttc ccgttctttg      2700
     agctggacag cgcctgaagg tcaaatggga tgattcactc cttatgtcat accactccca      2760
     gtaaatctct gggggaaaga catcttacag gacactagga ctgaccttaa ctaatgcatg      2820
     ctcgccacaa gtcgttcgta agattaagaa aatatgctat aaagaaggaa ggggattagg      2880
     aaaaggagag cagggtaaac ttgaacctat ccctcaaaaa ggtaataatg ggagacaagg      2940
     tttggatttt ttctagagac agctgttgag ggttccatgc ccataccatg gcttacagag      3000
     gaagttgtat gggttcccca atggcctctc tcctctgaaa aattagaagc agccacaaaa      3060
     ctaatttctg aacagctaca cttggggcat ttagagcctt ctaactcacc ctggaataca      3120
     cctattttcg taattaagaa aaaatctggc aaatggcgct tattacatga tcttagagca      3180
     attaatgcgc aaatgcatct atttggacca gttcagcaag ggctaccatt actttctgcc      3240
     ttacccaaaa attgggaaat tataatccta gacattaaaa attgcttttt ctctatacct      3300
     ttatgccctc aagataggca aagatttgca tttacgatcc cagccattaa ttacttagag      3360
     ccagatcaaa aataccaatg gaaggtccta cctcagggga tggcgaatag cccaccatgt      3420
     gtcaactgta tgtacaattg gcacttaagt cagttagaga acattttcca tcattacagg      3480
     tgataattta tatggatgac attttgattt gccataaaaa ttcagagtta ttgcaagatg      3540
     cataccttat attaataaaa acgttagggc aatggggatt gcaggtggcc accgaaaagg      3600
     tgcaagttgc tcgaatggga gccttcctag ggtcacttat ttatcctgac aaaattgttc      3660
     ctcaaaaatt agagattcgc aaagatcaac tacatacctt gaatgatttt caaaaattgt      3720
     taggagatat taattggctg agaccctttt tgaaaattcc atcagcagaa ttaaagccct      3780
     tatttgacat attagaggga gatacccata tctcctccca cagagcactt acctcagctg      3840
     catgtcaagc tttacaaatt gtagaaaagg ccctacaaga tgctcaatta cacgcattga      3900
     cgagtcaaag tcatttgaat tgtgcatatt aaaaactgca cagttaccaa cagtggtctt      3960
     atggcaaaat gggcccttgt tgtgggtcca tcctaatgct tcccctgcaa aaatcattga      4020
     gtggtatcct aatatgccag ttgctcaact tgcacttagg gggataaaag cagccattac      4080
     ttatttcggg taagaacctt atatagtaag tgtaccttat acttctgctc aagttcaaac      4140
     cctggcagca acaaccaacg attgggcagt cttggttgcc tcctattcag gacaaattga      4200
     taaccattat ccaaaacata caattttaca atttgcctta agccaagcta tagtgtttcc      4260
     aataataaca gtcaaacacc cacttccgga tggggtagta gtgtatagag atggatccaa      4320
     atctggtata ggtgcatatg tagtaaatgg ccaagtaaca tctaaacaat ataatgattc      4380
     atcaccccat gttgtagagt gtttggtagt tctagaagtc cttgaaactt tcctgggacc      4440
     gctcaatatt gtatctgatt ccttatatgt gttcaatgca gttaatatgc ttgaagttgc      4500
     aggcttaatt aaaccaacta gtaagcttgc tcacattttt caaaagattc agtcagcctt      4560
     gtatacagaa gacacttgtc tatattactc atgtttgagg tcattctggc cttcctggcc      4620
     tcatgtctca tggaaatgac ttagcaaaca aagccactag aatcgtggct gctgctttgt      4680
     cctcacaggc agaggctgca agagaatttc atgaatgctt tcatgtgaca cctgagacat      4740
     tacaccaccg ttttaattta accaggaaag aatctcgtga cattgtcacc caatgtcgaa      4800
     actgttgtca atttttacct actcctcatg taggggtaaa ccctcgtggc gtcaggacat      4860
     tacaggtctg gcaaatggat gtcagtcata tttcctcctt tgggagaaat caatatttac      4920
     atgtttctat tgacacctgc tcttgtgtaa tatttgccac acctttaaca ggtgaaaaag      4980
     actctcatgt tatacagcat tgcctagaag cgtggagtgt gtgggcaagc cacaattcta      5040
     aaaacggata atgagccagt catataattc tacttaattt caacaatttt gtcatcaaat      5100
     ggatgtcact catttgactg gccttcctta taatactcaa ggacaaggca ttgttgaacg      5160
     tgcccacccc aaactcaaat cttataaaac agaaagaggg agttgatgag actctgacct      5220
     cagtgccaag agtagcagta tctatggcac tctttacact tatttttttg aatctcgacg      5280
     agcagggaca ctctgcagct gagcgacata gctcagaccc tgatagacca aaagaaatgg      5340
     tcaaagggaa ggatgtttta actggtcagt ggaaagcgcc ggatcctatc ttaatcagat      5400
     cctggggagc tgtttgtgtt ttttcacaga gttaagacaa cccattttga ctgacggaat      5460
     gactcatccc caggatattc atcaaggatg gtgcagaaga tgctgacctc ccgaggactg      5520
     ttcctgatcc tgacaatgct gaacttgtct caggttccta gtataatggg ccagcagaga      5580
     tgggctattc tctcaacttt ccctaaacca atgccagttc gctatgatgc tatagttttt      5640
     ccaaaattct ttactactga taaaacagtg gatttgccat attaccctat gatcccaacc      5700
     cgagcaccat taggagaaaa tcgcacttta ctagaacatg gttctttatg ttttcgaatt      5760
     aatggaccag gaaattgtat caacctcaca gcctgagctt tggggaagtt taatgagcat      5820
     agaggaggtt gcgtgacaca acccaagata cttccaatgt agagataacc gttacaaatc      5880
     ggaccttttg gcacgaccta aattgggtta atggtacatt tctaccacct aacttttcag      5940
     acaaaaaacg tccacaccaa ccaaaaatag cccctcattg tagtttggaa gatgaagggc      6000
     tgatcctgcc attgtctgat tgtcaatcct ccatcactca ttgggcagat cagagtaaaa      6060
     ccttttcctt ttctcccaac atgatagata acccagagaa ggaatttgtt atgaaaaagg      6120
     gacttttgat actggacatt agaatgcatc cctttaacaa gtgggtgctt tgtggagtca      6180
     atggcagttg tacagaactc aatcctttga tcctttatcc agggaggagc agttggaaag      6240
     gcttctttta ctggcatctc aagatttgct cagtattggg gaatacatga tgcctccctg      6300
     gactcttatg gatatagtaa taccagatgc agagatcact gggtttaata aaactttggt      6360
     aaaccagatt aattatccat ctaccacagt ctgtgtttac cccgctttct tgtttattct      6420
     ttcaaatgat tcatttgaaa tctgttccaa tgataattgt tggatttctc aactttgggt      6480
     agtaacaaag aacaccgtgc catggtggca cggatcccac gttggatctc tgttctggtg      6540
     gatacaccct ccatcttatc tatgttttga aaaaagagag attttggcat tactgctgcc      6600
     gtgatcatag caatttcagc cagtgcagct gctgctacag ctgcagggta tgctatggtt      6660
     agtgcggttc aatcaggcac aaaattaaat cagctttcag cagatctggc tgatgccatc      6720
     actgtccaag cttctgctag taccaagtta aagggagggc tgatgacttt gaatcagtgc      6780
     cttgacctgg cggaagaaca gataggtgtt ctatgaagat ggcccagttg ggttgtgaaa      6840
     gaaaactgga agctctgtgc attaccagtg tccaatatga aattttactt atgcagctaa      6900
     tttgtctaga caggtttctt tatatcttgc aggaaacttg tctgaaagat tcgatgagac      6960
     ccttgaggtc cttagagcgg ccgttctaaa gatcaactca acacgagtgg acctgtcatt      7020
     gacagaggtc ctctcctcct ggatttcact gccttttctt attttaaaga atgggtgggg      7080
     gtaggtttat ttggcgttgc acctgctgtg gacttgtggt catgctctgg ttggtttgca      7140
     agctcagaac ccaacaaaca cgtgacaagg ttttgataac ccaagcactt gctgccatca      7200
     agcaaggggc cttccctgaa atctggctat ctatgctcaa aaattaattg acattggtgg      7260
     ctgtcctctt ttatagagtt cgccctagtt tatttagtag ttaatgtcac atagcactgt      7320
     ggtatccagg gaggggcaac tttcctcatg cacagatcaa cctaagacac agggcccggt      7380
     ggcgataggg ttaccctatg cacggaaagg ctgtgcactt ggaggaatga cctaagacag      7440
     gagccacagt ggatgggcaa agttacacag gcctagacca gcctcaagtt ttaataaaat      7500
     aaaaagggga aga                                                         7513
//
ID   RMER2       repbase;    DNA;    ROD; 130 BP.
XX
AC   L00605;
XX
DT   27-JAN-1997 (Rel. 3, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat.
XX
KW   Repetitive sequence; RMER2.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-130
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit F.A.;
RT   "Identification of new medium reiteration frequency repeats in
RT   the genomes of primates, rodentia and lagomorpha.";
RL   Genetica 98, 235-247 (1996).
XX
CC   [1] (Consensus)
XX
CC   RMER2 was found also in Rattus norvegicus.
XX
SQ   Sequence 130 BP; 33 A; 24 C; 32 G; 41 T; 0 other;
     ttggcttggg tttcttttgg ggggcaactt ggaaactaat gctaggtacc agcctgttag        60
     tttacctgag ttcaaactta ggtcaggttc tctaaaatgg agtctgaatt taaaagactc       120
     ggcatcccaa                                                              130
//
ID   RSINE2A     repbase;    DNA;    ROD; 290 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 2.03, Created)
DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   SINE element RSINE2 subfamily - a consensus.
XX
KW   SINE2; SINE; Non-LTR Retrotransposon; Interspersed Repeat; B4;
KW   RSINE2 family; RSINE2A; retroposon; subfamily RSINE2A.
XX
OS   Rodentia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-290
RA   Lee I., Westaway D., Smit F.A., Cooper C., Yao H., Prusiner B.S.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions.";
RL   Unpublished (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 290 BP; 75 A; 77 C; 86 G; 50 T; 2 other;
     tggggctggg gagatggctc agtcgataaa gtgcttgccg tgcaagcatg aggacctgag        60
     ttcggatctc cagcacccac gtaaaagccg ggcatggtga tatacgcctg taatcccagc       120
     gctggagagg cggagacagg aggatccctg gggctcgctg gccagccagc ctagccgaat       180
     cggcgagctc caggttcagt gagagaccct gtctcaaaaa ataargtgga gagtgattra       240
     ggaagacact cggtgttaac ctctgacctc cacacacaca cacacacaca                  290
//
ID   MT2B        repbase;    DNA;    ROD; 533 BP.
XX
AC   .
XX
DT   25-APR-1997 (Rel. 3, Created)
DT   25-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Long terminal repeat of retrovirus-like element; MTE2; MT2B.
XX
OS   Sciurognathi
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia.
XX
RN   [1]
RP   1-533
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 220-224..
XX
CC   [1] (Consensus)
XX
SQ   Sequence 533 BP; 136 A; 114 C; 126 G; 141 T; 16 other;
     tgtagtggct attcctggtt gtcaacttga ctatatctgg aatgaactac aatccagaat        60
     tggaaggctc acctgtgatc ctgatcttga ggctggaaga tacaagtttc tgacctggat       120
     cttggcatgg agatcttgag gcatagtggc catgaaaanc ttaggcccag gcaaggtagt       180
     acangccttt aattccagga gactgaggca aggagatctt tgagttcaag gtcanccaga       240
     tcyaggcnng rngrtacaca tctttaatct gggccacacc ttctggctgg aggcctacat       300
     aaggacattg gaagaaggaa ggntcnytyt cttcgcctgc ttgyacttac tggccagyac       360
     atctgttgga gcctacttct tcaggattcc agcttatata gaagaccagc tgaaayagct       420
     agcctcgcgg gactgagcaa ctactagatc cttggacttt ccattcacag ctgaccattg       480
     ttgggttagt tggactgcag actgtaagtc attccaataa attcccttaa tat              533
//
ID   SYNREP_MM   repbase;    DNA;    ROD; 266 BP.
XX
AC   X14228;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Mouse synaptonemal repetitive DNA sequence.
XX
KW   Repetitive DNA; MMSYNREP; SYNREP_MM.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-266
RA   Dadasheo Y.S., Bashkirov I., Belostosky D., Milshina N.,
RA   Karpota J.O., Bogdanob F.Y.;
RT   "Nucleotide sequence of a specific DNA from a mouse synaptonemal
RT   complex fraction.";
RL   Unpublished.
XX
RN   [2]
RP   1-266
RA   Bashkirov I., Belostotsky A.D., Bogdanob F.Y., Dadasheo S.,
RA   Karpota J.O., Milshina N.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (01-FEB-1989)N. Milshina,
RL   Institute of General Genetics, USSR Academy of Science, 117809
RL   GSP 1, Moscow B-333, Gubkin St.3 U.S.S.R..
XX
DR   GenBank; X14228; Positions       1     266.
XX
SQ   Sequence 266 BP; 113 A; 30 C; 59 G; 64 T; 0 other;
     gaacagatta gatgagtaag ttacactgaa aaacacattc gttggaaacg ggatttgtag        60
     aacagtgtat atcaatgagt tacaatgaga aacatggaaa atgataaaaa ccacactgta       120
     gaacagatta gatgagtgag ttacactgaa aaacacattc gttggaaacg ggatttgtag       180
     aacagtgtat atcaatgagt tacaatgaaa aacatggaaa atgataaaaa tcacactgta       240
     gaacatatta gatgagtgag ttaggg                                            266
//
ID   B3          repbase;    DNA;    ROD; 228 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 3, Created)
DT   11-AUG-1997 (Rel. 3, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE; B3 family; B3.
XX
OS   Rodentia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-228
RA   Kalb F.V., Glasser S., King D., Lingrel B.J.;
RT   "A cluster of repetitive elements within a 700 base pair region
RT   in the mouse genome.";
RL   Nucleic Acids Res 11, 2177-2184 (1983).
XX
RN   [2]
RP   1-228
RA   Lee I., Westaway D., Smit F.A., Cooper C., Yao H., Prusiner B.S.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions.";
RL   Unpublished (1996).
XX
CC   [2] (Consensus)
XX
CC   The tRNA-like region of B3 is very similar to that of B2.
XX
SQ   Sequence 228 BP; 65 A; 64 C; 51 G; 43 T; 5 other;
     ggggctggag agatagctca gcggttaaga gcactggctg ctcttccaga ggacccgggt        60
     tcggttccca gcacccacat ggcggctcac aaccgtctgt aactctagtt ccaggggatc       120
     tracnccctc ttctgacctc cacgggcacc aggcacgcac gtggtacaca gacgtacatg       180
     cargcaaaac actcatacac ataaaataaa aataaatmtt twaaaaaa                    228
//
ID   IAPLTR3_I   repbase;    DNA;    ROD; 6821 BP.
XX
AC   .
XX
DT   30-JAN-2004 (Rel. 9, Created)
DT   30-JAN-2004 (Rel. 9, Last updated, Version 1)
XX
DE   Mouse family of LTR retrotransposons - a consensus.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERVK; IAPLTR3;
KW   IAPLTR3-int; IAPLTR3_I; LTR.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RA   Karolchik D., Baertsch R., Diekhans M., Furey S.T., Hinrichs A.,
RA   Lu T.Y., Roskin M.K., Schwartz M., Sugnet W.C., Thomas J.D.,
RA   Weber J.R., Haussler D., Kent J.W.;
RT   "The UCSC Genome Browser Database.";
RL   Nucleic Acids Res 31, 51-54 (2003).
XX
RN   [2]
RP   1-6821
RA   Pavlicek A., Jurka J.;
RT   "IAPLTR3_I - a subfamily of autonomous LTR retrotransposons.";
RL   Direct Submission to Repbase Update (JAN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the UC Santa Cruz
CC   genome annotation. Similar to IAPEYI. Individual copies are ~98%
CC   identical to the consensus. Flanked by IAPLTR3 LTRs.
CC   IAPLTR3_I_ORF1: 525-1899 (458 aa) gag
CC   MGSSQSVITPLQAVLKQRDLQVTSHTLQNFVKEVDRVAPWYACSGSLTVASWNKLGRDLDRKHEEGDLRL
CC   GTKAIWKLIKNCLEDETCRPAIVEGQGTLEEVQDSMSETERSERIRAQKKKCLRKKGPPQDSEGRGEKKK
CC   GSETEPSTKKKPYTNFYPIHDLEALEINSSGSEDLDPSEEAKLEEEAAKYKEQRYNPDRWSRSRSNKKGS
CC   ISATVPTAPPLYELQYSANSFFPQEELKKIQMAFPVFDTGEAGRMHAPVDYKQLKELAESVCNYGVSANF
CC   TLVQVERFANMAMTPSDWQMIAKATLPNMGQYMEWKALWYDAAQNQARVNTTAVDDNQRQWTFELLTGQG
CC   QYATNQINYPWGAYAQIGAAAVKAWKALTRKGEAGGHLTKIVQGPQEAFSDFVARMTEAAARVFGDPEQA
CC   MPLIEQLIYEQATQECRAAITPRKKKGWYKTGLRYVGS
CC   IAPLTR3_I_ORF2: 2305-3061 (252 aa) pol (partial)
CC   MPQMNVQPILVKSPGPLPPRTMGLIVGRGSLTLQGLVVHPGVVDHQHLQDIQVLCSCPQGIFSISPGDRI
CC   AQLIFLPSPDKDEDNIKELRGMGSSGPDSAYLVMPLNARPTLHLFINDKDFEGIMDTGADKSIISSYWWP
CC   KSWPVTKSSHSLQGLGYQSCPAISSSTLTWQTSEGQRGLFTPYVLPLPINLWGRDVLSEMGITLTNEYSV
CC   QTTNIMKKMGYTKGKGLGSKEQGRLEPVSHNGNPGRRGLGFS
CC   IAPLTR3_I_ORF3: 3297-5580 (761 aa) pol (partial)
CC   MNLFGSIQRGLPLLSTLPKQWKIVILDIKDCFFSIPLCHQDRPRFAFTIPALNHMEPDKRFQWKVLPQGM
CC   ANSPTMCQLFVQAALEPVRQYFPSLLLLHYMDDILLCHKDMMLLQKSYSFLIKMLNQWGLQIAAEKVQIS
CC   EVGSFLGTIIFPDKILPQKLEIRRDHLHTLNDFQKLLGSINWLRPFLKISSAELKPLFDILKGDSHISSP
CC   RALTPAANKALQVVENALQNAQLQRIEESQPFNLCVFKTAQLPTAVLWQDGPLLWIHPNASPARVIDWYP
CC   NAVAQLALRGLKAAVTHFGRDPKLLIVPYTATQVQVLAATSDDWAVLVTSFSGQIDNHYPRHPILQFALN
CC   QAIVFPQVTAKNPLPEGIIVYTDGSKTGVGAYVTNNKIVSKQYNETSPQIVECLVVLEVLKAFPGPLNIV
CC   SDSSYVVNAVNLLEAAGVIKSSSKVADIFQKIQAVLLHRRFPVYITHVRAHSGLPGPISRGNDLADRATR
CC   VVAAALSSQVDAARNFHKQFHVTAETLRRCFALTRKEAREIVTQCQNCCQFLPVPHVGVNPRGIQPLQVW
CC   QMDVTHISSFRRLQYLHVSVDTCSGIIFASPLTGEKASHVIQHCLEAWSAWGQPKILKTDNGPAYTSQKF
CC   RQFCRQMNVTHLTGLPYNPQGQGIVERAHRTLKSYLIKQKGGVDEALPLTPRVAVSMALFTLNFLNLDEQ
CC   GHTAADRHCSEPNRPREMIKWKDVLTGKWRGPDPILIRSRGAICVFPQEEDNPLWVPERLT.
XX
SQ   Sequence 6821 BP; 1892 A; 1544 C; 1637 G; 1748 T; 0 other;
     tctggttgcc agaagcccgg gaattaacat cgccagcatc gaggagaacc cctggagatg        60
     gggtgggttc agaactgcag agaaaaggta agttcggaga ggtatgtctg atcgtgaacc       120
     tcttatccct tttgatttcg gtcttaatct agatgcaccc taggaagggg cggtagaagc       180
     tctagtcttg gttgccgtcc atcgaggctg gccctgaaat ttgctatcca ttgaggctgt       240
     ttctgaaata ttctgtccat cgaggctggt gctgaaattt gaggtccatc gaggctggtg       300
     ctaaaatttt ctgtccatcg aggctggtgc tgaaattctt attttgtcca tcgaggcttg       360
     tgctgaaatt tgaggtgtgg tcagtccgac gtagataagc ggcagcaccg aggtatcttg       420
     taagcctccc atagataagg gagcagagca ccgtgtttac ttttggcttt gcttaaggag       480
     taccataagt cgggcgtaga tcagccgcag gtactcattc tatcatgggc tcttcacagt       540
     cagtgatcac cccattacag gcagtgctaa agcaacgcga tctgcaggtc acctcccata       600
     cgctgcagaa ttttgttaag gaggtggatc gcgttgctcc ctggtatgcc tgttcggggt       660
     ctctaactgt agcctcatgg aataagctag gaagggacct tgaccgtaag catgaagagg       720
     gagacttacg cctaggcacc aaggcaattt ggaagctgat aaaaaactgt ctagaggatg       780
     aaacctgccg acccgccatt gtggagggac agggaacact agaagaggtt caggacagta       840
     tgtcagaaac cgaacggagc gagagaataa gagctcaaaa aaaaaaatgt ctaagaaaaa       900
     aaggacctcc ccaggattca gaaggaaggg gagagaaaaa gaagggcagt gaaactgagc       960
     cctctactaa gaaaaagcct tatactaatt tttatcctat ccatgacttg gaggccttag      1020
     agattaatag ttcagggtcc gaagatctag accccagtga ggaggctaaa ttagaggagg      1080
     aggcagcaaa atataaagaa caaagatata accctgaccg atggtcgcga tcaagaagta      1140
     acaaaaaggg tagcatatca gctactgtgc ccacagcgcc accactttat gaattgcagt      1200
     atagtgctaa ctcttttttt cctcaggaag agttaaaaaa gatacagatg gcatttccag      1260
     tctttgatac tggggaggcg gggcgtatgc atgccccagt ggactataaa caacttaaag      1320
     aacttgctga atctgtctgt aactatgggg tcagtgccaa ttttactctg gttcaggtcg      1380
     agagattcgc taatatggcc atgaccccat cagattggca aatgatagca aaggctacac      1440
     tccctaatat gggacaatat atggaatgga aagctctatg gtatgatgcg gcccaaaatc      1500
     aggccagggt caataccaca gcagttgatg acaaccagag acaatggacc tttgaattgt      1560
     tgaccggcca agggcagtat gccaccaatc aaattaacta tccttggggg gcatatgccc      1620
     agataggggc agctgcggtc aaggcttgga aggcacttac aagaaaaggg gaggctgggg      1680
     gtcaccttac aaagattgtt cagggccccc aggaagcatt ctctgatttt gtggcaagaa      1740
     tgactgaggc tgcagcccgg gtctttggcg accccgagca agccatgcct ctaattgaac      1800
     agctcattta tgagcaagcc acccaagagt gcagggcggc catcacacca agaaaaaaaa      1860
     aagggtggta caagactggc ttaagatatg tagggagcta ggaggccctc tcaccaacgc      1920
     gggactagcc gcggctatat tgaaatctca gaggcgccct aatttcaaca aacaaaaggc      1980
     gtgtttcaat tgtgggaaag ctggacattt gaaaagagat tgccctgtac ttgaacgtgc      2040
     aagaggagct gttctctgct cccgctgcag aaagggctat cacaaggcta gtgaatgccg      2100
     ctctgtcaga gatataaaag gcagactcct gcccccgata ggtgaagtta atccctcaca      2160
     gtcaaaaaac ggggtgctgg gcccccgatc ccagggccct cacaaatatg ggagccgttt      2220
     tgtcagaagc cagagcagga cagaggagat aacacccgac gagttacagg agtggacttg      2280
     cgtgccacct ccagtttttt actcatgccc caaatgaatg tgcaaccaat ccttgttaag      2340
     tctcctggac ccttaccccc tcggactatg ggtctcattg ttgggcgagg atctctcact      2400
     ttacaaggcc ttgtggttca tcctggagta gtggaccacc aacacctgca agacattcaa      2460
     gtcctttgct cctgccccca aggtattttt tccattagcc caggagatag aattgcacaa      2520
     ttaatattct tgcccagccc tgataaggat gaagataaca taaaagaatt gagaggtatg      2580
     ggttcttctg gccccgattc agcctatcta gttatgcctt tgaatgccag gcctactcta      2640
     catcttttta ttaatgacaa agattttgag gggattatgg acaccggggc agataagagt      2700
     atcatttcat cttactggtg gcccaagagc tggcctgtta caaaatcttc tcattcttta      2760
     caaggcctgg gttatcaatc ttgcccagcg attagttcat ccaccctgac atggcaaacc      2820
     tcagaaggac agaggggcct atttactcca tatgtgctcc cgctgccgat aaacctatgg      2880
     ggcagagatg tgctttctga gatgggaatc acattaacca atgaatactc agttcagacc      2940
     actaatatta tgaagaagat ggggtacaca aagggaaagg gattgggaag caaagaacaa      3000
     ggtagacttg agcctgtctc ccacaacggt aacccaggta gacggggctt gggtttttcc      3060
     taggggccgt tggggttaca agacccatcc cctgggtaac agaggaaccc gtgtgggtct      3120
     cccaatggcc gctatcctct gaaaaattgg aggcagtcaa caagctagtt acagaacagg      3180
     tgcagctcgg acatttggaa ccttccacgt ccccgtggaa tactccaatt tttgccataa      3240
     aaaagaaatc aggcaaatgg aggttacttc atgaccttcg agcaattaat gcacaaatga      3300
     accttttcgg ctcaatccag cggggtttac ctctgttatc taccctgcct aagcaatgga      3360
     aaattgtcat tttagacatt aaagactgtt tcttttccat ccctttgtgt caccaagatc      3420
     gaccaagatt tgcttttaca attccagccc ttaatcatat ggagcctgat aagaggttcc      3480
     agtggaaagt cctccctcag ggcatggcaa atagccccac tatgtgccag ctttttgtac      3540
     aggcagcatt agaacctgtg agacaatatt ttccctcctt actgttatta cattatatgg      3600
     atgatattct tttgtgccat aaagatatga tgcttttaca aaaatcctat tcatttttga      3660
     taaaaatgtt aaaccaatgg ggactgcaga tagctgcaga aaaggttcag atttcggaag      3720
     tgggttcctt tctgggaacc attattttcc cagataagat acttcctcaa aaattggaaa      3780
     ttcgcagaga tcatttacat actcttaatg attttcaaaa gttattgggg agtataaatt      3840
     ggcttaggcc ttttttaaag atttcctctg ccgagcttaa acctttattt gatattttaa      3900
     agggggattc acatatctcc tcccccagag cccttactcc tgcggctaat aaagccttgc      3960
     aagtagtaga gaatgcctta caaaatgccc agttacagcg tattgaggaa tcacaacctt      4020
     tcaacttgtg tgtctttaag acagctcagt taccaactgc tgtattgtgg caagatggac      4080
     cattattatg gatccatccc aatgcttctc cggcaagagt aatcgattgg tatcctaacg      4140
     ccgttgcgca acttgcgctt cgtggcttaa aagcagcagt cactcatttt ggacgagatc      4200
     ctaaattgct aattgttccc tatactgcca cacaagttca ggtccttgca gctacatctg      4260
     atgactgggc agtattagtc acctcctttt caggacaaat tgacaatcat tatcctagac      4320
     atccaatttt acaatttgcc ctgaatcagg ccatagtgtt tccacaggtg acagcaaaaa      4380
     acccgcttcc agaaggaatc atagtgtata cagatgggtc aaaaactggt gtaggcgctt      4440
     atgtgaccaa taacaaaata gtgtctaaac aatataatga aacttcacct cagattgtgg      4500
     agtgtttggt ggttttggag gtccttaagg ccttcccggg accgcttaac attgtgtcag      4560
     attcctccta tgtggtcaat gcagttaacc ttctagaggc tgctggggta ataaaatcat      4620
     ccagtaaagt cgctgatatt tttcaaaaaa tacaggctgt tttattacat aggagatttc      4680
     ctgtttatat cacccatgtt agagcacatt caggtctccc tgggcccata tccagaggca      4740
     atgatctcgc agaccgagcc accagggttg tggctgctgc cctttcatcc caagtggatg      4800
     ctgcaagaaa ttttcacaaa caattccatg tgacggctga aaccttgcgc cgttgctttg      4860
     cattgaccag aaaggaggct agggaaatag ttactcagtg tcaaaactgt tgccagttct      4920
     tgccagtgcc acatgtgggg gttaacccac ggggaattca accgctacaa gtctggcaga      4980
     tggatgtaac acacatttcc tcctttagga ggcttcaata cctgcatgtt tctgtggata      5040
     cttgttctgg tatcattttt gcctcgcctc ttacggggga aaaggcctca catgtaattc      5100
     aacattgcct tgaagcctgg agtgcttggg gacaacccaa aattcttaaa acagataatg      5160
     gaccggccta cacctctcaa aaatttcgac agttctgtcg ccagatgaat gtaactcatt      5220
     taactggttt gccatacaac cctcagggac aaggcattgt ggaacgtgcc caccgcactc      5280
     ttaaatctta cctaatcaaa cagaaagggg gagtcgacga ggctctgccc ttaacaccga      5340
     gagtggccgt ctctatggca ctctttactc ttaatttttt gaatcttgat gaacaaggcc      5400
     acactgcggc tgatcgtcac tgttcagaac caaacagacc tagagaaatg atcaaatgga      5460
     aggatgtctt aaccggaaaa tggagaggcc cggatcctat tttaataaga tccaggggag      5520
     ctatttgtgt ttttccacag gaagaagaca atcctctttg ggttccagaa cgcctcacct      5580
     gaaggatctc cccttcagaa gatgtggaca aaagagggaa cactgaaaca acgatggata      5640
     ctgacccttc tactggagat cctggttcct agtatatcag gggaattgcg ttgggtatta      5700
     tgtccacctt tccctgccca tgcctgtcat gcacagtgca caagtgagca gtttaagctt      5760
     atttaaagaa aagagagatt ttagaatctc tgctattata gttggcttgg tagcaacagc      5820
     agcaatagct gcctctatca ctgcttcggc ccttgccttg tctgctacgg ttcagacaat      5880
     gcaaaccatc aatgaccttt cggcaagagt gacatcggcc ctggacaggc aggccacggc      5940
     caactcccag atatagggag gcctcatgtt ggtaaaccaa cggatcgatc tggtccaaga      6000
     acaggtggat atcctgtggc aaatggctta gctgagttgc gaacataagc tgcctagcct      6060
     cggtatcacc tcagtacaat ttgagaattt tataagagca actaacctgt caaaggcttt      6120
     gtttcattat ttgttacaga attggaccat agaatttgaa cagacactcc gggagctgag      6180
     gatcgctgtc ttacaagtca attcgacacg tcttgacctg tcattgacgg aaggacctgg      6240
     atttctgcag cattctccta cttcaaggaa tgggtggggg tggatttgtt tggagtggct      6300
     gtgtatggtg gagtactgct cctactatgg atgatctgca aacttaaagc ccaaacaagg      6360
     agggacagga tggtagtaac ccaggcgctt gttgctttgg agcatggtgc ctcccccgat      6420
     atatgattat cgatacttaa gcaataggtc gctggccact cagctcttgc accccacgag      6480
     gctagtctca ttgcacggga tagagtgagt gtgcttcagc agcccgggag agttgtacgg      6540
     ctaagcactg cagtagaaag gctctgcggc ataaaatgag cctattctag ggagacatgt      6600
     catcttgtat gaaggttgag tgtccaagtg tccttccccc aggaaaaacg acacaggagc      6660
     ggaccaaaac ccctccgggt gacgagcctg ggaggaggtt ttgtgtaagg cccctatgct      6720
     tgcacactgg ggatttgacc tctatctcca ctctcagtac tgggtggcct gttgcttcta      6780
     aaataaaaga aaagggggag atgtgaggag ccgccctcac a                          6821
//
ID   MER121      repbase;    DNA;    ROD; 270 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Interspersed repetitive element - a consensus.
XX
KW   MER121.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-270
RA   Jurka J.;
RT   "MER121.";
RL   Direct Submission to Repbase Update (SEP-2000).
XX
CC   [1] (Consensus)
XX
CC   Possible non-autonomous DNA transposon.
XX
SQ   Sequence 270 BP; 75 A; 45 C; 35 G; 107 T; 8 other;
     gcgttyggta aaaatctcaa ayyatttttc arrmrttggg gtttggcaaa acccaaaatr        60
     cattttgcca agcacttttt tcccccctta atttttaaac ccatgtgtat ttcaagggaa       120
     atttaatcca tatgtttctg attcatttac acttaactca tcaaaatgtt gttttgtaag       180
     agttatttga tgtccaagaa gccttatgag tctttttaat gactttttaa agcctttttt       240
     cttttcctta aaaacaggaa gtcatttttt                                        270
//
ID   RLTR13B3    repbase;    DNA;    ROD; 943 BP.
XX
AC   .
XX
DT   30-JAN-2004 (Rel. 9, Created)
DT   30-JAN-2004 (Rel. 9, Last updated, Version 1)
XX
DE   Mouse long terminal repeat - a consensus.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERVK; LTR;
KW   RLTR13B3.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RA   Karolchik D., Baertsch R., Diekhans M., Furey S.T., Hinrichs A.,
RA   Lu T.Y., Roskin M.K., Schwartz M., Sugnet W.C., Thomas J.D.,
RA   Weber J.R., Haussler D., Kent J.W.;
RT   "The UCSC Genome Browser Database.";
RL   Nucleic Acids Res 31, 51-54 (2003).
XX
RN   [2]
RP   1-943
RA   Pavlicek A., Jurka J.;
RT   "RLTR13B3 - a subfamily of LTR retrotransposons.";
RL   Direct Submission to Repbase Update (JAN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the UC Santa Cruz
CC   genome annotation. RLTR13B3 is ~93% identical to RLTR13B4. The
CC   subfamily is very young, since individual copies share 97-98%
CC   identity with the consensus. TDSs are 6 bp long.
XX
SQ   Sequence 943 BP; 236 A; 224 C; 195 G; 288 T; 0 other;
     tgctacgctc tctggtcgag tcaactggac aagccgagag gcttaaaagt cactcatgag        60
     gcaaaagagt ttcaaggaag ctctcctcct ggagtctagc gttccctacc catacagtaa       120
     tttttcattc ccgcgttcca ttcccgcgtt agtctagtgt atggatccac gtgctctctt       180
     tcatatattt tcctatcata agtgcctttt aagattgaat tctgacatag ctaaagccgt       240
     ccgccagtgt tccaacagtc ctagttcgtc cttagcaaga ccttgggctt ggaattcagt       300
     actgcccctg gtattacact atctctttga gtaaaagtta ggtcactgcc cttcacagga       360
     atttaccatc actaaggaag aaagaagttt ctgaccgtag gagaaaccag aatagatatt       420
     tagaattata gctgagttac acctatctat atacaggaat ttacaatggt ttagggaagt       480
     agattccggc tgtggtttta gagtattgca ttattcatga gatggttagc tagaacggaa       540
     ctccctagtt agaaccatga cttgggtgtg aaagcccttg ccctaggagt gaaaagttct       600
     cacacctggc ttctaagact atagctgacc ttagataggg ctgactctgt ctcagttatt       660
     ttattgccca gttcctgcca gtctttgcgt tttcatttcc tctgttctgt gtaagagtca       720
     ttaagcatcc ggttacctca tttgtacctt tgtgggtatg tcacccaaac taccttgttg       780
     tcttctgcat aaaaagtctg atgttcgatt tgaaaaatta cattcagatt cacacacaaa       840
     ctctccctgt gtgtgtgtct gtctgtcatt catccacgct ttgcccaccc gcgtcgagag       900
     accccgttcc acgcagacac agggacccag aaggtctgcg gca                         943
//
ID   B2L_S       repbase;    DNA;    ROD; 254 BP.
XX
AC   .
XX
DT   30-APR-1998 (Rel. 3.03, Created)
DT   30-APR-1998 (Rel. 3.03, Last updated, Version 1)
XX
DE   B2-like retroposon from Sciurognathi - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; B2; B2L_S.
XX
OS   Sciurognathi
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia.
XX
RN   [1]
RA   Serdobova V.I., Kramerov A.D.;
RT   "Short retroposons of the B2 superfamily: Evolution and
RT   application for rodent phylogeny study.";
RL   Unpublished.
XX
RN   [2]
RA   Kramerov A.D.;
RT   "B2L_S.";
RL   Direct Submission to Repbase Update (14-JUL-1994)D.A. Kramerov,
RL   Inst of Gene Biology, Russian Academy of Sciences, 34/5 Vavilov
RL   str., 117984 Moscow B334, RUSSIA.
XX
RN   [3]
RA   Jurka J.;
RT   "B2L_S.";
RL   Direct Submission to Repbase Update (20-APR-1998).
XX
CC   [3] (Consensus)
XX
CC   Consensus obtained from the following entries: X80307 ,X80307
CC   ,X80308,
CC   X80311, X80315, X80316, X80317, X80320, Y09600 (GenBank,
CC   rel.105).
XX
SQ   Sequence 254 BP; 78 A; 56 C; 57 G; 58 T; 5 other;
     ggggctggag agatggctca gyggttaagg cgcttgcytg caaagcctga aggcctgggt        60
     tcgattcccc agyacccacg taagccagat gcacawagtg gcacatgcat ctggagttcg       120
     tttgcagtgg caggaagccc tggtgtgcct atactctctc actctctctc tgcctctctc       180
     tctctcaaat aaataaataa aatattaaaa aaaataaaat aaaataaaca ggtaaataag       240
     aaggaracta ctga                                                         254
//
ID   RMER3       repbase;    DNA;    ROD; 574 BP.
XX
AC   .
XX
DT   27-JAN-1997 (Rel. 3, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER3; putative LTR of retrovirus.
XX
OS   Rattus norvegicus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Rattus.
XX
RN   [1]
RP   1-574
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit F.A.;
RT   "Identification of new medium reiteration frequency repeats in
RT   the genomes of primates, rodentia and lagomorpha.";
RL   Genetica 98, 235-247 (1996).
XX
CC   [1] (Consensus)
XX
CC   7 bp terminal inverted repeats.
XX
SQ   Sequence 574 BP; 159 A; 176 C; 87 G; 152 T; 0 other;
     tgttgttgta aaaatataaa aataaagagt acagttgtct tttaccccgc taggtccgca        60
     ccacggtgcc caagatatct gctagatatc ttggcggaaa cacatcccag ccgcacactt       120
     ttttacactc aaaccctcac ataaaagaac acacaacaca ataatcttag acccaattgg       180
     taagatataa ttgcccacct aaacatacaa agcccggtac catccatccc ttaagaacat       240
     taataacaac ctgtaaatac acagagcgga atcttaacgt cacctgccat attgtcctgc       300
     catggcttct ccgcctctct ctccctcctg tctcttcctc tctcccttcc agtctcctcc       360
     tcttccttca aacttctctc ccgcccatcc ttccttctcc tccaatgaca ggcctccttc       420
     tatcctgtac ctgcccctca cctgtatttt acaaattcaa tggggagaag gttctggtga       480
     agtcacctga gtcctgagta cgtgactagg cagctgtcct tggggcagtg gaattagcat       540
     caaaatacag ataacttcag ggcaaaccac aaca                                   574
//
ID   L32         repbase;    DNA;    ROD; 408 BP.
XX
AC   K02061;
XX
DT   29-MAY-1998 (Rel. 3.1, Created)
DT   29-MAY-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Mouse ribosomal protein pseudogene rpL32-4A coding for L32.
XX
KW   Pseudogene; ribosomal protein; L32.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-408
RA   Dudov P.K., Perry P.R.;
RT   "The gene family encoding the mouse ribosomal protein L32
RT   contains a uniquely expressed intron-containing gene and an
RT   unmutated processed gene.";
RL   Cell 37, 457-468 (1984).
XX
DR   GenBank; K02061; Positions     113     520.
XX
SQ   Sequence 408 BP; 128 A; 103 C; 107 G; 70 T; 0 other;
     atggctgccc tccggcctct ggtgaagccc aagatcgtca aaaagaggac caagaagttc        60
     atcaggcacc agtcagaccg atatgtgaaa attaagcgaa actggcggaa acccagaggc       120
     attgacaaca gggtgcggag aaggttcaag ggccagatcc tgatgcccaa catcggttat       180
     gggagcaaca agaaaaccaa gcacatgctg cccagcggct tccgcaagtt cctggtccac       240
     aatgtcaagg agctggaggt gctgctgatg tgcaacaaat cttactgtgc tgagattgct       300
     cacaatgtgt cctctaagaa ccgaaaagcc attgtagaaa gagcagcaca gctggccatc       360
     agagtcacca atcccaacgc caggctacgc agcgaagaaa atgaatag                    408
//
ID   L1ME3A      repbase;    DNA;    ROD; 917 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   07-OCT-1998 (Rel. 3.09, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1ME3A) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   Repetitive sequence; L1 (LINE) family; L1M4; L1ME3a subfamily;
KW   L1ME3a.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-917
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-917
RA   Smit A.F.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   24%.
XX
SQ   Sequence 917 BP; 342 A; 169 C; 177 G; 220 T; 9 other;
     cttgtatcca gaatatataa agaacgccta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga cttgaatagg catttcacca aagaagatat acagatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatca gggaaatgca aattaaaacc       180
     acaatgagat accacttcac acccactaga atggctaaaa ttaaaaagac cgacaayaac       240
     aagtaytggc gaggatgtgg agcaaccgaa actctcatac attgctggtg ggagtgtaaa       300
     ttggtacaac cactttggaa aattgttwgg cagtatctac taaagctgaa catacgcata       360
     ccctatgacc cagcaattcc actcctaggt atatncccaa gagaaatgcg tacatatgtt       420
     caccaaaaga catgtacaag aatgttcata gcagcactgt tcgtaatagc ccmaaactgg       480
     aaacnaccca aatgcccatc aacagtagaa tggataaata aattgtggta tattcataca       540
     atggaatact acgcagcaat gagaatgaac gaactacagc tacacacaac aacatggatg       600
     aatctcacaa acataatgtt gagcgaaaga agccagacac aaaagagtac atactgtatg       660
     attccattta tataaagttc aaaaacaggc aaaactaatc tatgstgtta gaagtcagga       720
     tagtggttac ccttgggaag gggtagtgac tagaagggag cacatgaggg gctttctggg       780
     gtgctggtaa tgttctgttt cttgatctgg gtgctggtta cacgggtgtg ttcastttgt       840
     gaaaattcat cgagctgtac acttatgatw tgtgcacttt tctgtatgta tgttatactt       900
     caataaaaag ttaaaaa                                                      917
//
ID   LPKR_RN     repbase;    DNA;    ROD; 316 BP.
XX
AC   X05684;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3, Last updated, Version 3)
XX
DE   Repetitive segment of L-type pyruvate kinase.
XX
KW   Repetitive sequence; pyruvate kinase; RNLPKG; LPKR_RN.
XX
OS   Rattus norvegicus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Rattus.
XX
RN   [1]
RP   1-316
RA   Milner J.R., Bloom E.F., Lai C., Lerner A.R., Sutcliffe G.J.;
RT   "Brain-specific genes have identifier sequences in their
RT   introns.";
RL   Proc. Natl. Acad. Sci. USA 81, 713-717 (1984).
XX
RN   [2]
RP   1-316
RA   Cognet M., Lone C.Y., Vaulont S., Kahn A., Marie J.;
RT   "Structure of the rat L-type pyruvate kinase gene.";
RL   J. Mol. Biol 196(1), 11-25 (1987).
XX
DR   GenBank; X05684; Positions    4072    4387.
XX
SQ   Sequence 316 BP; 68 A; 56 C; 79 G; 113 T; 0 other;
     gggggtgggt ttgtttttgt ttttgttttt gtttttttga gatcgggtct ttttatgttg        60
     tagctctgac tgatggatag gcaggtctca aatttagaaa tctccctacc tttgcctcct       120
     gagagttgga ctgggaccac cttgctccac atgaggctgg gtttttgaga cagggtctca       180
     ggtagccttg gatatttcta gcttatttca tagaccctat tatatcgtct tagcctggtg       240
     aaagcatagg tatgtgatac cacacccaac ttaacaaatg cttgttgagt acctggaaaa       300
     caaggtttgg aattgg                                                       316
//
ID   IAPEZI      repbase;    DNA;    ROD; 6388 BP.
XX
AC   AC003993;
XX
DT   06-MAY-1999 (Rel. 4.04, Created)
DT   06-MAY-1999 (Rel. 4.04, Last updated, Version 1)
XX
DE   An internal portion of a recent strain of IAP provirus.
XX
KW   Endogenous Retrovirus; Interspersed Repeat; retrovirus;
KW   Intracisternal A particle element; IAP; IAPEZI.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-6388
RA   Lee Y.I., Wang K., Smit A.F., Yu J., Wong K.G., Iadonato P.S.,
RA   Magness L.C., Green P., Olson V.M., Hood L.;
RT   "Large-Scale Sequence Analysis of the Mouse T-Cell Receptor Alpha
RT   Locus.";
RL   Unpublished (1996) University of Washington Human Genome Center
RL   Box 352145 Seattle, WA 98195;Contact: Inyoul Lee
RL   (borah@u.washington.edu).
XX
RN   [2]
RP   1-6388
RA   Lee Y.I., Wang K., Smit A.F., Yu J., Wong K.G., Iadonato P.S.,
RA   Magness L.C., Green P., Olson V.M., Hood L.;
RT   "IAPEZI.";
RL   Direct Submission to Repbase Update (14-JAN-1998)Direct
RL   Submission  Human Genome Center, University of Washington, Box
RL   352145, Seattle, WA 98195, USA University of Washington Human
RL   Genome Center Box 352145 Seattle, WA 98195 Contact: Inyoul Lee
RL   (borah@u.washington.edu).
XX
DR   GenBank; AC003993; Positions   31587   37974.
XX
SQ   Sequence 6388 BP; 1829 A; 1391 C; 1507 G; 1661 T; 0 other;
     attggtgccg aattccggga cgagaaattc cgggacgaga aaaaactcgg gactggcgca        60
     aggaagatcc ctcattccag aaccagaact gcgggtcgcg gtaataaagg ttcccgtaaa       120
     gcagactgtt aagaaggatt caactgtatg aattcagaac ttttcagctg gggaacgaga       180
     gtaccagtga gtacagcttt acgaggtaag tctgatcttg aactttctaa cgaaattcaa       240
     gacagtctat cagaagtaaa gtggaatatg tttggccttg aattttttct ggtgttagga       300
     gcccttttgt tccttttcac atgttatcaa gtggttaaga tagggcggat tctagaggaa       360
     attcaggaca agctatcaga agtaaagcgg ggagagagag taggagcaaa gaggaaatat       420
     ggtacacaaa ataagtatac aggcctttcc aagggtcttg aacccgagga aaagttaagg       480
     ttaggtagga atacctggag agagattaga agaaaaagag gaaaaaggga aaagaagaaa       540
     gatcaattag cggaggtctc taggaaaagg agcctgtgct catcgctgga tgggctcggg       600
     aagccagctc ttagtagctc tgaagcaggt gaagaatcct cctctgagga aacagactgg       660
     gaggaagaag cagcccatta ccagccagct aattggtcaa gaaaaaagcc aaaagcggct       720
     ggcgaaggcc agtttgctga ttggcctcag ggcagtcggc ttcaaggtcc gccctatgcg       780
     gagtctccgc cctgcgtagt gcgtcagcag tgcgcagaga ggcagtacgc agagaggcag       840
     tgcgcagact cattcattcc cagagaggaa caaaggaaaa tacaacaggc atttccggtc       900
     tttgaaggag ccgagggtgg gcgtgtccac gctccggtag aatacttaca aattaaagaa       960
     attgccgagt cggtccgtaa atacggaacc aatgctaatt ttaccttggt gcagttagac      1020
     aggctcgccg gcatggcact aactcctgct gactggcaaa tggttgtaaa agccgctctc      1080
     cctagtatgg gcaaatatat ggaatggaga gcgctttggc acgaagctgc acaagcgcag      1140
     gcccgagcaa acgcagctgc tttgactcca gagcagagag attggacttt tgacttgtta      1200
     acgggtcagg gagcttattc tgctgatcag acaaactacc attggggagc ttatgcccaa      1260
     gtttcttcca cggctattag ggcctggaag gcgctctccc gagcaggtga aaccactggt      1320
     cagttaacaa agataatcca gggacctcag gaatccttct cagattttgt ggccagaatg      1380
     acagaggcag cagagcgtat ttttggagag tcagagcaag ctgcgcctct gataaaacag      1440
     ctaatctatg agcaagccac aaaggagtgc cgagcagcca tagccccaag aaagaacaaa      1500
     ggtttacaag actggctcag ggtttgtcgg gagcttgggg gacctctcac caatgcaggc      1560
     ttagcggctg ccatccttca atcccaaaaa tgctccatgg gcagaaatga tcggaggaca      1620
     tgttttaact gcaggaagcc tgggcatctt aagaaagatt gcagagctcc aggtaaacag      1680
     ggagggactc tcactctttg ctctaagtgt ggcaagggtt atcatagagc tgaccagtgt      1740
     cgctctgtga gggatataaa gggcagaatt cttcccccac ctgatagtca atcaactgat      1800
     gtgccaaaaa acgggtcatc gggccctcgg tcccagggcc ctcaaagata tgggaaccgg      1860
     tttgtcagga cccaggaagc agtcagagag gcgacccagg aagacccaca agggtggacc      1920
     tgcgtgccgc ctccgacttc ctattaatgc ctcaaatgag tattcagccg gtgccagtgg      1980
     agcctatacc atccttgccc ccaggaacca tgggccttat tctcggccgg ggttcactca      2040
     ccttgcaggg cttagtagtc caccctggag ttatggattg tcaacattcc cctgaaatac      2100
     aggtcctgtg ctcaagccct aagggcgttt tttctattag taaaggagat aggatagctc      2160
     agctgctgct cctccctgat aataccaggg agaaatctgc aggacctgag ataaagaaaa      2220
     tgggctcctc aggaaatgat tctgcctatt tggttgtatc tttaaatgat agacctaagc      2280
     tccgccttaa gattaatgga aaagagtttg aaggcatcct tgataccgga gcagataaaa      2340
     gtataatctc tacacattgg tggcccaaag catggcccac cacagagtca tctcattcat      2400
     tacagggcct aggatatcaa tcatgtccca ctataagctc cattgccttg acgtgggaat      2460
     cctctgaagg acagcaaggg aaattcatac cttatgtgct cccactcccg gttaacctct      2520
     ggggaaggga tattatgcag catttgggcc ttattttgtc caatgaaaac gccccatcgg      2580
     gagggtattc agctaaagca aaaaatatca tggcaaagat gggttataaa gaaggaaaag      2640
     ggttaggaca tcaagaacag ggaaggatag agcccatctc acctaatgga aaccaagaca      2700
     gacagggtct gggttttcct tagcggccat tggggcagca cggcccatac catggaaaac      2760
     aggggaccca gtgtgggttc ctcaatggca cctatcctct gaaaaactgg aagctgtgat      2820
     tcaactggta gaggaacaat taaaattagg ccatattgaa ccctctacct caccttggaa      2880
     tactccaatt tttgtaatta agaaaaagtc aggaaagtgg agactgctcc atgacctcag      2940
     agccattaat gagcaaatga acttatttgg cccagtacag aggggtctcc ctgtactttc      3000
     cgccttacca cgtggctgga atttaattat tatagatatt aaagattgtt tcttttctat      3060
     acctttgtgt ccaagggata ggcccagatt tgcctttacc atcccctcta ttaatcacat      3120
     ggaacctgat aagaggtatc aatggaaggt cttaccacag ggaatgtcca atagtcctac      3180
     tatgtgtcaa ctttatgtgc aagaagctct tttgccagtg agggaacaat tcccctcttt      3240
     aattttgctc ctttacatgg atgacatcct cctgtgccat aaagacctta ccatgctaca      3300
     aaaggcatat ccttttctac ttaaaacttt aagtcagtgg ggtttacaga tagccacaga      3360
     aaaggtccaa atttctgata caggacaatt cttgggctct gtggtgtccc cagataagat      3420
     tgtgccccaa aaggtagaga taagaagaga tcacctccat accttaaatg attttcaaaa      3480
     gctgttggga gatattaatt ggctcagacc ttttttaaag attccttctg ctgagttaag      3540
     gcctttgttt ggtattttag aaggagatcc tcatatctcc tcccctagga ctcttactct      3600
     agctgctaac caggccttac aaaaagtgga aaatgcctta caaaatgcac aattacaacg      3660
     tattgaggat tcgcagcctt tcagtttgtg tgtctttaag acagcacaat tgccaactgc      3720
     agttttgtgg cagaatgggc cattgttgtg gatccatcca aacgtatccc cagctaaaat      3780
     aatagattgg tatcctgatg caattgcaca gcttgccctt aaaggcctaa aagcagcaat      3840
     cacccacttt gggcaaagtc catatctttt aattgtacct tatactgctg cacaggttca      3900
     aaccttggca gccgcatcta atgattgggc agttttagtt acctcctttt caggaaaaat      3960
     agataaccat tatccaaaac atccaatctt acagtttgcc caaaatcaat ctgttgtgtt      4020
     tccacaaata acagtaagaa acccacttaa aaatgggatt gtggtatata ctgatggatc      4080
     aaaaactggc ataggtgcct atgtggctaa tggtaaagtg gtatccaaac aatataatga      4140
     aaattcacct caagtggtaa aatgtttagt ggtcttagaa gttttaaaaa cctttttaga      4200
     accccttaat attgtgtcag attcctgtta tgtggtaaat gcagtaaatc ttttagaagt      4260
     ggctggagtg attaagcctt ccagtagagt tgccaatatt tttcagcaga tacaattagt      4320
     tttgttatct agaagatctc ctgtttatat tactcatgtt agagcccatt caggcctacc      4380
     tggccccatg gctctgggaa atgatttggc agataaggcc actaaagtgg tggctgctgc      4440
     cctatcatcc ccggtagagg ctacaagaaa ttttcataac aattttcatg tgacggctaa      4500
     aacattacgc agtcgtttct ccttgacaag aaaagaagcc cgtgacattg ttactcaatg      4560
     tcaaagctgc tgtgagttct tgccagttcc tcatgtggga attaacccac gcggtattcg      4620
     acctctacag gtctggcaaa tggatgttac acatgtttct tcctttggaa aacttcaata      4680
     tctccatgtg tccattgaca catgttctgg catcatgttt gcttctccgt taaccggaga      4740
     aaaagcctca catgtgattc aacattgtct tgaggcatgg agtgcttggg ggaaacccag      4800
     actccttaag actgataatg gaccagctta tacgtctcaa aaattccaac agttctgccg      4860
     tcagatggac gtaacccacc tgactggact tccatacaac cctcaaggac agggtattgt      4920
     tgagcgtgcg catcgcaccc tcaaagccta tcttataaaa cagaagaggg gaattgaaga      4980
     gattttaccc cgagcaccaa gagtgtcggt gtctttggca ctctttacac tcaatttttt      5040
     aaatattgat gctcatggcc atactgcggc tgaacgtcat tgttcagagc cagataggcc      5100
     caatgagatg gttaaatgga aaaatgtcct tgataataaa tggtatggcc cggatcctat      5160
     cttgataaga tccaggggag ctgtctgtgt tttcccacag aatgaagaca acccattttg      5220
     ggtaccagaa agactcaccc gaaaaatcca gactgaccaa gggaatacta atgtccctcg      5280
     tcttggtgat gtccagggcg tcaataataa agagagagca gcgttggggg ataatgtcga      5340
     catttccact cccaatgacg gtgatgtata atgctcaagt attctcctgc ttttttacca      5400
     ctaactagga actgggtttg gccttaattc agacagcctt ggctctgtct ggacaggtcc      5460
     agatgactga caccattaac actttgtcag cctcagtgac tacagtcata gataaacagg      5520
     cctcaactaa tgtctagata cagagaggtc tcatgctggt taatcaactc atagatcttg      5580
     tccagataca actagatgta ttatgacaaa taactcagca gggttgtgaa caaaagtttc      5640
     cgggattgtg tgttatttcc attcagtatg ttaaatttac tagggcagct aatttgtcaa      5700
     aaagtctttt tcagtatatg ttacagaatt ggatggctga atttgaacag atcccttcgg      5760
     gaattgagac ttcaggtcaa ctccacgcgc ttggacctgt ccctgaccaa aggattaccc      5820
     aattggatct cctcagcatt ttctttcttt aaaaaatggg tgggattaat attatttgga      5880
     gatacacttt gctgtggatt agtgttgctt ctttgattgg tctgtaagct taaggcctaa      5940
     actaggagag acaaggtggt tattgcccag gcgcttgcag gactagaaca tggagcttcc      6000
     cctgatatat ctatgtttag gcaataggtc gctggccact cagctcttac atctcacgag      6060
     gctagactca ttgcacggga tggagtgagt gtgcttcagc agcccgagag agttgcaagg      6120
     ctaagcactg caatggaaag gctctgcggc atatatgagc ctattctagg gagacatgtc      6180
     atctttcatg aaggttcagt gtcctagttc ccttccccca ggcaaaacga cacgggagca      6240
     ggtcagggtt gctctgggta aaagcctgta agcctaagag ctaatcctgt acatggctcc      6300
     tttacctaca cactggggat ttgacctcta tctccactct cattaatatg ggtggcctat      6360
     ttgctcttat taaaaggata gggggaga                                         6388
//
ID   IAPLTR1a_I_MM repbase;    DNA;    ROD; 6481 BP.
XX
AC   .
XX
DT   30-JAN-2004 (Rel. 9, Created)
DT   30-JAN-2004 (Rel. 9, Last updated, Version 1)
XX
DE   Mouse family of LTR retrotransposon - a consensus.
XX
KW   LTR Retrotransposon; Interspersed Repeat; LTR; ERVK;
KW   IAPLTR1a_I_MM; IAPLTR1a_Mm-int; IAPLTR2_Mm.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RA   Karolchik D., Baertsch R., Diekhans M., Furey S.T., Hinrichs A.,
RA   Lu T.Y., Roskin M.K., Schwartz M., Sugnet W.C., Thomas J.D.,
RA   Weber J.R., Haussler D., Kent J.W.;
RT   "The UCSC Genome Browser Database.";
RL   Nucleic Acids Res 31, 51-54 (2003).
XX
RN   [2]
RP   1-6481
RA   Pavlicek A., Jurka J.;
RT   "IAPLTR1a_I_MM.";
RL   Direct Submission to Repbase Update (JAN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the UC Santa Cruz
CC   genome annotation. Similar to IAPEY3_I. LTRs are listed as
CC   IAPLTR1a_Mm. This family is very young and elements are ~98%
CC   identical to the consensus.
CC   IAPLTR1a_I_MM_ORF: 184-2059 (625 aa) gag
CC   MNSELFSWGTRVPVSTALQGKSGLELSKEIQDSLSEVKWKIALQGMFGLEFFLVLGALLFLFTCYQVIKI
CC   GLKILDEIQGNLSEVKRGERVGAKRKYGTQNKYTGLSKGLEPEEKFRSGKNTWGEIRRKEKKKEKKKDQL
CC   AEVSRRYSSLDELRKPALSSSEADEEFSSEETDWEEEAAHYQPANWSRKKPKAAGESQRTVQPPGSRFQG
CC   PPYAEPPPCVVRQQCAERQCAERQCAECAERQCAERQCAERQCAERQCADSFIPREEQRKIQQAFPVFEG
CC   AEGGRVHAPVEYVQIKELAESVRKYGTNANFTLVQLDRLAGMALTPADWQTIVKAALPSMGKYMEWRALW
CC   HEAAQAQARANAAALTPEQRDWTFDLLTGQGAYSADQTNYHWGAYAQISSTAIRAWKALSRAGEATGQLT
CC   KIIQGPQESFSDFVARMTEAAERIFGESEQAAPLVEQLIYEQATKECRAAIAPRKNKGLQDWLRVCRELG
CC   GPLSNAGLAAAILQSQNRSMGRNNQRTCFNCGKPGHFKKDCRAPDKQGGTLTLCSKCGKGYHRADQCRSV
CC   RDIKGRILPPPDSQSAYVPKNGSSGPRSQGPQRYGNRFVRTQEAVREATQEDPQGWTCVPPPTSY
CC   IAPLTR1a_I_MM_ORF: 2061-2835 (258 aa) pro
CC   MPQMSIQPVPVEPIPSLPPGTMGLILGRGSLTLQGLVVHPGVMDCQHSPEIQVLCSSPKGVFSISKGDRI
CC   AQLLLLPDNTREKFAGPEIKKMGSSGNDSAYLVVSLNDRPKLRLKINGKEFEGILDTGADKSIISTHWWP
CC   KAWPTTESSHSLQGLGYQSCPTISSIALTWESSEGQQGKFIPYVLPLPVNLWGRDIMQHLGLILSNENAP
CC   SGGYSAKAKNIMAKMGYKEGKGLGHQEQGRIEPISPNGNQDRQGLGFP
CC   IAPLTR1a_I_MM_ORF: 3071-4658 (529 aa) pol (partial)
CC   MNLFGPVQRGLPVLSALPRGWNLIIIDIKDCFFSIPLCPRDRPRFAFTIPSINHMEPDKRYQWKVLPQGM
CC   SNSPTMCQLYVQEALLPVREQFPSLILLLYMDDILLCHKDLTMLQKAYPFLLKTLSQWGLQIATEKVQIS
CC   DTGQFLGSVVSPDKIVPQKVEIRRDHLHTLNDFQKLLGDINWLRPFLKIPSAELRPLFGILEGDPHISSP
CC   RTLTLAANQALQKVEKALQNAQLQRIEDSQPFSLCVFKTAQLPTAVLWQNGPLLWIHPNVSPAKIIDWYP
CC   DAIAQLALKGLKAAITHFGRSPYLLIVPYTAAQVQTLAATSNDWAVLVTSFSGQIDNHYPKHPILQFAQN
CC   QSVVFPQITVRNPLKNGIVVYTDGSKTGIGAYVANGKVVSKQYNENSPQVVECLVVLEVLKTFLEPLNIV
CC   SDSCYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSRRFPVYITHVRAHSGLPGPMALGNDLADKATK
CC   VVAAALSSPVEAARNFHNNFHVTAETLRSRFSLTRKEGP
CC   IAPLTR1a_I_MM_ORF: 4755-5487 (244 aa) pol (partial)
CC   MDVTHVSSFGKLQYLHVSIDTCSGIMFASPLTGEKASHVIQHCLEAWSAWGKPKLLKTDNGPAYTSQKFQ
CC   QFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKAYLIKQKRGTFEETLPRAPRVSVSMALFTLNFLNIDAH
CC   GHTAAERHCSEPDRPNEMVKWKNVLDNKWYGPDPILIRSRGAVCVFPQNEDNPFWIPERLTRKIQTDQGN
CC   TDVPRLGDVQGVNNKERAALGDNVDISTPNDGDV.
XX
SQ   Sequence 6481 BP; 1865 A; 1421 C; 1537 G; 1658 T; 0 other;
     attaagaatt ggtgccgaaa tccgggacga gaaaaaatcc gggacgaaaa aatacaagaa        60
     aactcgggaa ccggcgcaag gaagatccct cattccagaa ccagaactgc gggtcgcggt       120
     aataaaggtt cccgtaaagc agactgttaa gaaggattca actgcatgaa ttcagaactt       180
     ttcagctggg gaacgagagt accagtgagt acagctttac aaggtaagtc tggtcttgaa       240
     ctttctaagg aaattcaaga cagtctatca gaagtaaagt ggaaaatagc tttacaaggt       300
     atgtttggcc ttgaattttt tctagtgtta ggagcccttt tgttcctttt cacatgttat       360
     caagtgatta agatagggct gaaaattctg gatgaaattc agggcaatct atcagaagta       420
     aagcggggag agagagtagg agcaaagaga aaatatggta cacaaaataa gtatacaggc       480
     ctttccaagg gtcttgaacc cgaggaaaag tttaggtcag gtaagaatac ctggggagag       540
     attagaagga aggaaaagaa aaaagaaaag aaaaaagatc aattagcgga ggtctctagg       600
     agatactcgt cactagatga gctcaggaag ccagctctta gtagctctga agcagatgaa       660
     gaattctcct ctgaggaaac agactgggag gaagaagcag cccattacca gccagctaat       720
     tggtcaagaa aaaagccaaa agcggctggc gaaagccagc gtactgttca acctccgggc       780
     agtcggtttc aaggtccgcc ctatgcggag cccccgccct gcgtagtgcg tcagcaatgc       840
     gcagagaggc aatgcgcaga gaggcaatgc gcagagaggc agtgcgcaga gaggcagtgc       900
     gcagagaggc agtgcgcaga gaggcagtgc gcagactcat tcattcccag agaggaacaa       960
     aggaaaatac aacaggcatt tccagtcttt gaaggagccg agggtgggcg tgtccacgct      1020
     ccggtagaat acgtacagat taaagaactt gccgagtcgg tccgtaaata cggaaccaat      1080
     gctaatttta ccttggtgca gttagacagg ctcgccggca tggcactaac tcctgctgac      1140
     tggcaaacga ttgtaaaagc cgctctccct agtatgggca aatatatgga atggagagcg      1200
     ctttggcacg aagctgcaca agcgcaggcc cgagcaaacg cagctgcttt gactccagag      1260
     cagagagatt ggacttttga cttgttaacg ggtcagggag cttattctgc tgatcagaca      1320
     aactaccatt ggggagctta tgcccaaatt tcctccacgg ctattagggc ctggaaggcg      1380
     ctctcccgag caggtgaagc cactgggcag ttaacaaaga taatccaggg acctcaggag      1440
     tccttctcag attttgtggc cagaatgaca gaggcagcag agcgtatttt tggagagtca      1500
     gagcaagccg cgcctctggt agaacagctc atctatgagc aagccacaaa ggagtgccga      1560
     gcggccatag ccccaagaaa gaacaaaggc ttacaagact ggctcagggt ttgtcgagag      1620
     cttgggggac ctctcagcaa tgcaggttta gcggctgcca tccttcaatc ccaaaaccgc      1680
     tccatgggca gaaataatca gaggacatgt tttaactgcg gaaagcctgg gcattttaag      1740
     aaagattgca gagctccaga taaacaggga gggactctca ctctttgctc taagtgtggc      1800
     aagggttatc atagagccga ccagtgtcgc tctgtgaggg atataaaggg cagaatcctt      1860
     cccccacctg atagtcaatc agcttatgtg ccaaaaaacg ggtcatcggg ccctcggtcc      1920
     cagggccctc aaagatatgg gaaccggttt gtcaggaccc aggaagcagt cagagaggcg      1980
     acccaggaag acccacaagg gtggacctgc gtgccgcctc cgacttccta ttaatgcctc      2040
     aaatgagtat tcagccggtg ccagtggagc ctataccatc cttgcccccg ggaaccatgg      2100
     gccttattct cggccggggt tcactcacct tacagggctt agtagtccac cctggagtta      2160
     tggattgtca acattcccct gaaatacagg tcctgtgctc aagccctaaa ggcgtttttt      2220
     ctattagtaa aggagatagg atagctcagc tgctgctcct ccctgataat accagggaga      2280
     aatttgcagg acctgagata aagaaaatgg gctcctcagg aaatgattct gcctatttgg      2340
     ttgtatcttt gaatgataga cctaagctcc gccttaagat caacggaaaa gagtttgaag      2400
     gcatccttga taccggagca gataaaagta taatttctac acattggtgg cccaaagcat      2460
     ggcccaccac agagtcatct cattcattac agggcctagg ttatcaatca tgtcccacta      2520
     taagctccat tgccttgacg tgggaatcct ctgaagggca gcaagggaaa ttcatacctt      2580
     atgtgctccc actcccggtt aacctctggg gaagggatat tatgcagcat ttgggcctta      2640
     ttttgtccaa tgaaaacgcc ccatcgggag ggtattcagc taaagcaaaa aatatcatgg      2700
     caaagatggg ttataaagaa ggaaaagggt taggacatca agaacaggga aggatagagc      2760
     ccatctcacc taatggaaac caagacagac agggtctggg ttttccttag tggccattgg      2820
     ggcagcacga cccataccat ggaaaacagg ggacccagtg tgggttcctc aatggcccct      2880
     atcctctgaa aaactagaag ctgtgattca actggtagag gaacaattaa aactaggcca      2940
     tattgaaccc tctacctcac cttggaatac tccaattttt gtaattaaga aaaagtcagg      3000
     aaagtggaga ctgctccatg acctcagagc cattaatgag caaatgaact tatttggccc      3060
     agtacagagg ggtctccctg tactttccgc cttaccacgt ggctggaatt taattattat      3120
     agatattaaa gattgtttct tttctatacc tttgtgtcca agggataggc ccagatttgc      3180
     ctttaccatc ccctctatta atcacatgga acctgataag aggtatcaat ggaaggtctt      3240
     accacaggga atgtccaata gtcctactat gtgtcaactt tatgtgcaag aagctctttt      3300
     gccagtgagg gaacaattcc cctctttaat tttgctcctt tacatggatg acatcctcct      3360
     gtgccataaa gaccttacca tgctacaaaa ggcatatcct tttctactta aaactttaag      3420
     tcagtggggt ttacagatag ccacagaaaa agtccaaatt tctgatacag gacaattctt      3480
     gggctctgtg gtgtccccag ataagattgt gccccaaaag gtagagataa gaagagatca      3540
     cctccatacc ttaaatgatt ttcaaaagct gttgggagat attaattggc tcagaccttt      3600
     tttaaagatt ccttccgctg agttaaggcc tttgtttggt attttagaag gagatcctca      3660
     tatctcctcc cctaggactc ttactctagc tgctaaccag gccttacaaa aggtggaaaa      3720
     agccttacag aatgcacaat tacaacgtat tgaggattcg cagcctttca gtttgtgtgt      3780
     ctttaagaca gcacaattgc caaccgcagt tttgtggcag aatgggccat tgttgtggat      3840
     ccatccaaac gtatccccag ctaaaataat agattggtat cctgatgcaa ttgcacagct      3900
     tgcccttaaa ggcctaaaag cagcaatcac ccactttggg cgaagtccat atcttttaat      3960
     tgtaccttat accgctgcac aggttcaaac cttggcagcc acatctaatg attgggcagt      4020
     tttagttacc tccttttcag gacaaataga taaccattat ccaaaacatc caattttaca      4080
     gtttgcccaa aatcaatctg ttgtgtttcc acaaataaca gtaagaaacc cacttaaaaa      4140
     tgggattgtg gtatatactg atggatcaaa aactggcata ggtgcctatg tggctaatgg      4200
     taaagtggta tccaaacaat ataatgaaaa ttcacctcaa gtggtagaat gtttagtggt      4260
     tttagaagtt ttaaaaacct ttttagaacc ccttaatatt gtgtcagatt cctgttatgt      4320
     ggttaatgca gtaaatcttt tagaagtggc tggagtgatt aagccttcca gtagagttgc      4380
     caatattttt cagcagatac aattagtttt gttatctaga agatttcctg tttatattac      4440
     tcatgttaga gcccattcag gcctacctgg ccccatggct ctgggaaatg atttggcaga      4500
     taaggccact aaagtggtgg ctgctgccct atcatccccg gtagaggctg caagaaattt      4560
     tcataacaat tttcatgtga cggctgaaac attacgcagt cgtttctcct tgacaagaaa      4620
     agaaggcccg tgacattgtt actcaatgtc aaagctgctg tgagttcttg ccagttcctc      4680
     atgtgggaat taacccacgc ggtattcgac ctctacaggt ctggcaaatg gatgttacac      4740
     atgtttcttc ctttggaaaa cttcaatatc tccatgtgtc cattgacaca tgttctggca      4800
     tcatgtttgc ttctccgtta accggagaaa aagcctcaca tgtgattcaa cattgtcttg      4860
     aggcatggag tgcttggggg aaacccaaac tccttaagac tgataatgga ccagcttata      4920
     cgtctcaaaa attccagcag ttctgccgtc agatggacgt aacccacctg actggacttc      4980
     catacaaccc tcaaggacag ggtattgttg agcgtgcgca tcgcaccctc aaagcctatc      5040
     ttataaaaca gaagagggga acttttgaag agactttacc ccgagcacca agagtgtctg      5100
     tgtctatggc actctttaca ctcaattttt taaatattga tgctcatggc catactgcgg      5160
     ctgaacgtca ttgttcagag ccagataggc ccaatgagat ggttaaatgg aaaaatgtcc      5220
     ttgataataa atggtatggc ccggatccta ttttgataag atccagggga gcggtctgtg      5280
     ttttcccaca gaatgaagac aacccatttt ggataccaga aagactcacc cgaaaaatcc      5340
     agactgacca agggaatact gatgtccctc gtcttggtga tgtccagggc gtcaataata      5400
     aagagagagc agcgttgggg gataatgtcg acatttccac tcccaatgac ggtgatgtat      5460
     aatgctcaag tattctcctg cttttttacc actaactagg aactgggttt ggccttgatt      5520
     cagacagcct tggctctgtc tggacaggtc cagacgactg acaccattaa cactttgtca      5580
     gcctcagtga ctacagtcat agataaacag gcctcagcta atgtcaagat acagggaggt      5640
     ctcatgctgg ttaatcaact catagatctt gtccagatac aactagatgt attatggcaa      5700
     atagctcagc tgggatgtga acaaaagttt ccgggattgt gtgttacttc cattcagtat      5760
     gttaaattta ctagggcagc taatttgtca aaaagtcttt ttcagtatat gttacagaat      5820
     tggacggctg aatttgaaca gatccttcgg gaattgagac ttcaggtcaa ctccacgcgc      5880
     ttggacctgt ccctgaccaa aggattaccc aattggatct cctcagcatt ttccttcttt      5940
     aaagaatggg tgggattgat attatttgga gatacacttt gctgtggatt agtgttgctt      6000
     ctttgattgg tctgtaagct taaggcccaa actaggagag acaaggtggt tattgcccag      6060
     gcgcttgcag gactagaaca tggagcttcc cctgataata tctatgctta ggcaataggt      6120
     cgctggccac tcagctctta tatcccatga ggctagtctc attgcacggg atagagtgag      6180
     tgtgcttcag cagcccgaga gagttgcacg gctaagcact gcagtagaag ggctctgcgg      6240
     cataatatga gcctattcta gggagacatg tcatctttca agaaggttga gtgtccaagt      6300
     gtccttctct ccaggcaaaa cgacacggga gcaggtcagg gttgctctgg gtaaaagcct      6360
     gtgagcctaa gagctaatcc tgtacatggc tcctttacct acacactggg gatttgacct      6420
     ctatctccac tctcattaat atgggtggcc tatttgctct tattaaaagg aaagggggag      6480
     a                                                                      6481
//
ID   L1_CC       repbase;    DNA;    ROD; 679 BP.
XX
AC   Y00726;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3, Last updated, Version 3)
XX
DE   Guinea-pig LINE repeat sequence.
XX
KW   Repetitive sequence; LINE1; L1; CCL1; L1_CC.
XX
OS   Cavia cutleri
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Hystricognathi; Caviidae; Cavia.
XX
RN   [1]
RP   1-679
RA   Hall L.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (22-JUL-1988)Hall L.,
RL   University of Bristol, Dept. of Biochemistry, School of Medical
RL   Sciences, University walk, Bristol BS8 1TD, United Kingdom..
XX
RN   [2]
RP   1-679
RA   Laird E.J., Jack L., Hall L., Boulton P.A., Parker D.,
RA   Craig K.R.;
RT   "Structure and Expression of the guinea-pig Alpha-lactalbumin
RT   gene.";
RL   Biochem. J 254, 85-94 (1988).
XX
DR   GenBank; Y00726; Positions       1     679.
XX
SQ   Sequence 679 BP; 163 A; 118 C; 122 G; 276 T; 0 other;
     aagcttttta acaagatgag cttccagttg ttgatttttt gtgaacgttt ctatgcaaca        60
     gaagttttgt tcatgaagtc ttttgcctat accaatgtct tcaagagttc tacctagtct       120
     atcttccagc aggtttaaca tttctgtttt aatacttagg ttttgattca tttcaatttt       180
     agtttagagt gtggtgaaag atgtgggtat aattttaatc ttcagcatgt ggaaagccaa       240
     tttttccagc accatttact aaagaggctt ttttccagca aaggtgtttg gcttttttgt       300
     aaaaaataaa ggggctgagt gtgttggagt tgtctctgta tcttctaacc tgttccacta       360
     ttccttgggt ctgttttttt gccagtacca tgctgttttt atcacagtag ctttatggta       420
     taatttcaag tcagggtggg tgatgccccc ttcttggtct ttgttgccca taatttcctg       480
     tactattata ggtctcttct ggttccaaat gaattttata atttctctaa ttctgcaaga       540
     tatgctcttg gaattttaat cagaattgca ttaaatctgt ataatgattt tgaaagcatg       600
     gccattttca ctattggttc ttcctactca agagcaaggg atttcttccc attttctgat       660
     atcctattca atctcctta                                                    679
//
ID   RSINE1      repbase;    DNA;    ROD; 179 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 3, Created)
DT   22-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   SINE element; RSINE1 family - a consensus.
XX
KW   retroposon; SINE; RSINE1 family; ID; RSINE2; RSINE1.
XX
OS   Rodentia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-179
RA   Kapitonov V.V., Chopra V., Jurka J.;
RT   "RSINE1.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   ID-like SINE element.
XX
SQ   Sequence 179 BP; 54 A; 45 C; 47 G; 27 T; 6 other;
     gggctgggga gatggctcag tnygtaaagt gcttgccgtg caagcatgag gacctgagtt        60
     tgatccccag aacccacata aaaaagaggg agaggacctg aggaagacac cygaggttga       120
     cctctggcyy ccacatayat gtgcacatgt gcacacatgc acacacacac acacacaca        179
//
ID   RMER10A     repbase;    DNA;    ROD; 389 BP.
XX
AC   .
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   putative long terminal repeat; RMER10A.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-389
RA   Smit F.A.;
RT   "RMER10A.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Average divergence from consensus 19%.
XX
SQ   Sequence 389 BP; 75 A; 137 C; 75 G; 101 T; 1 other;
     tgtttggttt cgaaccccgg acaaggggct gaggtgcata ttttacatat caaagcagac        60
     ctggcctcca ggttctccca gcatccctca gtccctacct ggcatacccc gcccccaacc       120
     ctgaactttc cagcccaggg gctgggctgc ccttccccca gaggctcttc cctatataat       180
     ccagacattt tggtctcccc gttctctctc tgcacatggg cactttctct tccctcctcc       240
     ctcctacccc gtccccatgg cgacttccct ggcctcggtc cttggggcca gtgaactcac       300
     ccgagagcag yttcccaata aacctgcctt caatataatc taatctggct tgaattggct       360
     catttcaccg gcggagaaat aatttatca                                         389
//
ID   IAPEY3_I    repbase;    DNA;    ROD; 7680 BP.
XX
AC   .
XX
DT   30-JAN-2004 (Rel. 9, Created)
DT   30-JAN-2004 (Rel. 9, Last updated, Version 1)
XX
DE   Mouse family of LTR retrotransposons - a consensus.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERVK; IAPEY3;
KW   IAPEY3_I; IAPEY3_LTR; LTR.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RA   Karolchik D., Baertsch R., Diekhans M., Furey S.T., Hinrichs A.,
RA   Lu T.Y., Roskin M.K., Schwartz M., Sugnet W.C., Thomas J.D.,
RA   Weber J.R., Haussler D., Kent J.W.;
RT   "The UCSC Genome Browser Database.";
RL   Nucleic Acids Res 31, 51-54 (2003).
XX
RN   [2]
RP   1-7680
RA   Pavlicek A., Jurka J.;
RT   "IAPEY3_I - a mouse subfamily of LTR retrotransposons.";
RL   Direct Submission to Repbase Update (JAN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the UC Santa Cruz
CC   genome annotation. Internal sequence of the IAPEY3 subfamily.
CC   LTRs are listed as IAPEY3_LTR. IAPEY3_I is 80% identical
CC   to IAPEYI. The IAPEY3 subfamily is young and some members still
CC   contain intact ORFs. 6 bp TSDs.
CC   IAPEY3_I_ORF: 890-1856 (322 aa) gag polyprotein
CC   MRKKDTIQMKGELISHRKSQKRLETKVSSSQLAARPPGRRPLGPSAPPPYVQRYHSDSFIPKEEQRKMQQ
CC   AFPVFEGADGGRVHAPVEYIQIKELAESVRNYGVSANFTIAQVERLATLAMTPGDWMTVVKAAVPNMGMY
CC   LEWKALWQDSCQTQARANATVEGDQRTWTFELLTGQGQHAANQTNYHWGAYAQISAAAVKAWKALSRKGE
CC   ASGHLTKIIQGAQESFSDFVARMTEAAGRIFGDPEAAMPLIEQLVYEQATQECRAAITPRKSKGLQDWLK
CC   VCRELGGPLTNAGLAAAILQGQRRSDTAELKLCYNCGKPGHF
CC   IAPEY3_I_ORF: 3149-5549 (800 aa) pol polyprotein, RT, IN, RNase
CC   MILEQLMHKCACLGQFSEGYHCFLPYPKIGEIIIIDIKDCFFSIPLCPQDRQRFAFTIPAINHLEPDQRY
CC   QWKVLPQGMANSPTMCQLYVQLALKSVRNHFPSLLLVLYMDDILICHKNSQLLQDAYPILIKTLGQWGLQ
CC   VATEKVQVAQMGTFLGSLIYPDKIVPQKLEIRKDQLHTLNDFQKLLGDINWLRPFLKIPSAELKPLFDIL
CC   EGDTHISSHRALTPAACQALQTIEKALQDAQLQRIDESKSFELCVLKTAQLPTAVLWQNGPLLWVHPNAS
CC   PAKIIEWYPNAVAQLALRGIKAAITHFGKEPHILIVPYTSAQVQTLAATTDDWAVLVTSYSGQIDNHYPK
CC   HPILQFALTQAIVFPVITAKHPLADGVVVYTDGSKSGIGAYVVNDQVTSKQYNETSPQVIECLVVLEVLK
CC   TFPGPLNIVSDSLYVVNAVNTLEVAGLNKPSSKLAHIFQQIQSALLHRRHLVYITHVRAHSGLPGPMSHG
CC   NDLADKATRIVAAALSSQAEAAREFHKRFHVTAETLRRRFYFNQKRSSDIVTQCQNCCQFLPTPHVGVNP
CC   RGVRPLQVWQMDVTHISSFGRNQYLHVSIDTCSGVMFATPLTGEKASHVIQHCLEAWSAWGKPTILKTDN
CC   GPAYTSAKFQQFCHQMDVTHLTGLPYNPQGQGIVERAHRTLKSYFIKQKGGVDETLPSVPRVAVSMALFT
CC   LNFLNLDEQGRSAADRHSSDPDRPKEMVKWKDVLTGLWKGPDPILIRSRGAVCVFPQSEDNPFWLPERLT
CC   RKIFIKDGVEDADLPRTASDPDNAELVSGS
CC   IAPEY3_I_ORF: 5909-6668 (253 aa) env
CC   MVHFYHLTFQTSQNVPHQPRIAPHCSLEDEGLILPWSDCQSSITRWADQSKTFSFSPNMMVDPEKEFVMK
CC   KGLFIQDIRMHPFHKWLLCGVNGSCTELNPLIFIQGGAVGKASFTGISRFAQYWGIHAASLDYLWIYYII
CC   PSVEITGFNKTLINQTNYLPTPVCVYPPFLFILSNDSFEDCLNDSCWISQCWDVTKDTRAMVARIPRWIP
CC   VPVETPSTLSLFRQKRDFWHYCCRDHSNFSQCSCCYSCRVRYG.
XX
SQ   Sequence 7680 BP; 2186 A; 1702 C; 1775 G; 2017 T; 0 other;
     agtggcgccg agaacccggg aaacatacca tcaccaggcg ctgataggag accctccctt        60
     ttcacggggc gggttcagaa ctacgggaca ctttacagct ctgcaaggta tgttcggtct       120
     tgaaatttct ccagagttag aggccctttt gtttgttttc acggggctta ttctttttct       180
     tttggttgcg ttctgcttcc accggtggaa ctgctgactg gttctcagtc gcggtcaggc       240
     atggttagat aaaagagcag tatgggaact tcccactctg tggtgaccgc cttacacggt       300
     cggtcctgaa gcagcgtggc ctgaaagtcg ccactaagac actagaaggc tttgtaaaag       360
     agatagatcg catagcaccg tggtatgcgt gctcagggtc cttaactatc ccctcttggg       420
     agaaactgaa gggagattta gttagggaac agcagaatgg caaacttaaa gcagggacca       480
     tgccgttgtg gaagctgata agatcgtgct taaaggacga ggaatgtcaa caagtggtta       540
     aggcagggca gagaatactg gaggaaattc aagacagtct atcagagaca gagcggggag       600
     agagattagg agctcaaaag aaaaaaaggt gcaccaaata agaaaacagg cctttccacg       660
     gaccttgagc ccgaggaaaa gagaatctag ggaaagaata ccctgggaga gtttagaaaa       720
     aaggatgaga aggaagagaa gaagaaagat caatctgggg aggtccctag gagaaggagc       780
     ctctatccgc cattagatga gtttaaggct ctagctctta gtagctcaga atcagatgag       840
     gaacttagcc cctctgagga aacagactta gaggaagaag cagctcgtta tgaggaagaa       900
     agataccatc cagatgaaag gcgagctaat cagtcacaga aaaagccaaa agcggctgga       960
     gacaaaagtc agctcaagcc agcttgctgc tcggcctccg ggccgtcggc ctctgggtcc      1020
     tagtgcacct ccgccttatg tgcagaggta tcattcagac tcattcattc caaaagagga      1080
     acagagaaaa atgcaacagg catttccagt ctttgaagga gccgatggag ggcgagttca      1140
     cgctccggtg gagtatatac agattaaaga gcttgctgag tcagtccgta actatggagt      1200
     cagcgccaat ttcactatag cacaagtcga aaggcttgct actttggcaa tgactcctgg      1260
     agattggatg actgttgtga aagctgcagt tcctaatatg ggaatgtatc tagagtggaa      1320
     agcattgtgg caagattcct gccagacaca ggcaagggcc aatgccaccg ttgaagggga      1380
     ccaaagaaca tggacttttg aattacttac aggtcaggga caacacgctg ctaaccagac      1440
     aaattatcat tggggagcgt acgctcagat ctcagctgcc gctgttaagg cgtggaaagc      1500
     actctctagg aagggagagg caagtggaca tttgacaaaa attatccagg gcgcacagga      1560
     gtcattctca gactttgtgg ctagaatgac agaggcagca gggagaatat ttggagaccc      1620
     agaggcagct atgcctttaa ttgaacagtt ggtttatgaa caagctacgc aggaatgcag      1680
     agcagcaatt acacctagaa agagtaaagg attgcaggac tggttaaagg tttgccgtga      1740
     gcttggaggg ccgctcacta atgctggatt ggcagccgcc attctgcagg ggcagaggcg      1800
     ctcagacaca gctgagctca aactttgcta taattgtggc aaaccagggc acttttaaaa      1860
     aaggactgca gagcccttgt aaaaaggaca gcgccagggt tgtgtactaa gtgtggaaaa      1920
     ggatatcatt gggccaaaga ttgtcgctca attaaagata tacgaggcag gctcttgcag      1980
     ccaggacccc ctcaagcagt agaaaatgag aatgaaggca tttcaaaaaa cgagtttcgg      2040
     gcccccaggt cccagggccc caaaacatat gggaccccga cgggcaacag gtggacacca      2100
     cagtccgcag ggcaacagaa ggctcagctg gattggacct ccgtgcctcc acccgattca      2160
     tgctgatgcc ccagatgggg gtgcagccaa ttcctactga ctataagggg cctctgccat      2220
     ctggaagtgt cggcctaata ctgggccggg cctccctcac cttacaaggc cttattgtcc      2280
     accctggagt tgtagatcag gattatgaag gggaacttca ggttctctgt tcctgccctc      2340
     aaggtgtctt ttctatatca caaggggata gaatagctca actaataatt ttgccaagcc      2400
     tacatggcct gttttccctc ctctggtgtc cctcgagctg ccagagggat tggttctact      2460
     ggaaatgatt ctgcttactt aataatgtct ttagattcca ggccatcctt agagttagtt      2520
     atagaaggga aacaatttaa agggattttt agatacagga gcagataaaa gtattatctc      2580
     ttcccactgg tggccaaaag cctggcccgt cactcagtca tcacactctt tacaagggtt      2640
     aggctatcag tcctgcccca ctattagctc ccgttctttg agctggcaag cacctgaagg      2700
     tcaaacggga caattcactc cttatgtctt accactccca gttaatctct ggggggagag      2760
     atattttaca ggcaatggga atgaccttga ctaatgaata ctcaccacaa gctgttcaaa      2820
     tgatgaagaa aatgggctat acagaaggaa aaggattagg gaaaggagag cagggtagac      2880
     ttgaacctat cccctcaaga aggtaataat gggagacaag gtttgggttt ttttctagaa      2940
     gcggctgttg agggttccat gcccatacca tggcttacag aggaagctgt atgggttcct      3000
     caatggcctc tttcctctga aaaattagaa gcagccacaa aactgatctc tgaacagcta      3060
     cgcttaggtc atttagagcc ctctacctca ccctggaata cacctatttt tgtaattaag      3120
     aaaaaatctg gcaaatggcg cttattacat gatcttagag caattaatgc acaaatgcgc      3180
     ctgtttgggt cagttcagcg agggctacca ttgctttctg ccctacccaa aaattgggga      3240
     aattataatt atagatatta aagattgttt tttctctata cctttatgcc ctcaagatag      3300
     gcaaagattt gcatttacca tcccagccat taatcattta gagcctgatc aaagatacca      3360
     atggaaggtc ctacctcagg ggatggcaaa tagccccacc atgtgtcaac tgtatgtgca      3420
     attggcactt aagtcagtta gaaatcattt tccatcatta cttctggtac tttatatgga      3480
     tgacattctg atttgccata aaaattcaca gttattgcaa gatgcatacc ctatattaat      3540
     aaaaacatta gggcaatggg gattgcaggt agccaccgaa aaggtgcaag ttgctcaaat      3600
     gggaaccttc ctagggtcac tcatttatcc tgacaaaatt gttcctcaaa aattagagat      3660
     tcgcaaagat caactacata ccttaaatga ttttcaaaaa ttgctgggag atattaattg      3720
     gctgagacca tttttgaaaa ttccatcagc agagttaaag cctttatttg atatattaga      3780
     aggagatact cacatctcct cccatagagc acttacccca gctgcatgtc aagctttaca      3840
     aactatagaa aaggccttac aagatgctca attacaacgc attgatgagt cgaagtcatt      3900
     tgaattgtgc gtattaaaaa ccgcacagtt gccaacagca gtcttgtggc aaaatggacc      3960
     cttattgtgg gtccacccta atgcttcccc tgcaaaaatc attgaatggt atcctaatgc      4020
     agttgctcaa cttgcactta ggggaataaa agcagccatt actcattttg gaaaagaacc      4080
     tcatatacta attgtgcctt atacctctgc tcaagttcaa accctggcag caacaactga      4140
     tgattgggca gtcttagtta cctcctattc aggacaaatt gataatcatt atcctaaaca      4200
     tccaatttta cagtttgcct taactcaagc catagtgttt ccagtaatta cagccaaaca      4260
     cccacttgca gatggggtgg tagtatatac agatggatcc aaatctggca taggtgcata      4320
     tgtagtaaat gaccaagtaa catccaagca atataatgag acatcacccc aggttataga      4380
     gtgtttagtg gtactagagg tccttaaaac tttcccagga ccgcttaata ttgtatctga      4440
     ttccttatat gtagttaatg cagttaatac acttgaagtt gctggcttaa ataaaccatc      4500
     tagcaagctt gctcacattt ttcaacaaat tcagtcagcc ttgttacata gaagacatct      4560
     tgtctatatt actcatgtca gggctcattc tggccttcct ggccctatgt ctcatggaaa      4620
     tgacttagca gacaaagcca ctagaatcgt ggctgctgct ctgtcctcgc aggcagaagc      4680
     tgcaagggaa tttcataaac gctttcacgt gacggctgaa actttacgcc gccggtttta      4740
     ctttaaccag aaaagaagct cggacattgt cacccaatgt caaaactgtt gtcaattttt      4800
     acctactcct catgtagggg taaacccccg aggcgtcagg ccattacagg tctggcaaat      4860
     ggatgtcact catatttcct cctttgggag aaatcaatat ttacatgttt ctattgacac      4920
     ctgctctggt gtaatgtttg ccacaccttt aacaggtgaa aaagcctctc atgttataca      4980
     gcactgttta gaagcctgga gtgcttgggg caagcccaca atccttaaaa cggataatgg      5040
     gccagcatat acttctgcta aatttcaaca attttgtcat caaatggatg tcactcacct      5100
     gactggcctt ccttataatc ctcaaggaca aggcattgtg gaacgtgccc accgcacact      5160
     caagtcttat tttataaaac aaaaaggggg agttgatgag actctgccct cagtgccaag      5220
     agtagctgtc tccatggcac tcttcacact taattttttg aatcttgacg agcaaggacg      5280
     ttctgcagct gatcgacata gctcagaccc tgatagacca aaagaaatgg tcaaatggaa      5340
     ggatgtttta actggtctgt ggaaaggccc ggatcctatt ttaataagat ccaggggagc      5400
     tgtctgtgtt tttccacaga gtgaagacaa cccattttgg ctgccggaac gactcacccg      5460
     caagatattc atcaaggatg gtgtggaaga tgctgacctc ccgaggactg cttctgatcc      5520
     tgacaatgct gaacttgtct caggttccta gtataatggg cgaacagaga tgggccattc      5580
     tctcggcttt ccctaaacca atgccagttc gccatgatgc tatagttttt ccaaaattct      5640
     ttactactaa taaaacagtg gatttgccat atctacccta tgatcccacc cgagcaccat      5700
     taggagaaaa tcgctcttta ctagaacagg gttctttatg ttttcaaatt aatggaccag      5760
     ggaaaatgta tcaacctcac agcccgagcc ttgggaatgt ttaataagca ccgaggaggc      5820
     ttggtgagca caacccaaga tacttccaac gcagatataa ccattattca aatcacatgg      5880
     accttctggc aggaggcaat ttgggttaat ggtacatttc taccacctaa cttttcaaac      5940
     aagtcagaac gttccccacc aaccaagaat agccccccat tgtagtttgg aagatgaagg      6000
     gctgatcctg ccatggtctg attgtcaatc ctccatcact cgttgggcag atcagagtaa      6060
     aaccttttcc ttttctccca acatgatggt tgacccagag aaggaatttg ttatgaaaaa      6120
     gggacttttc atacaggaca ttagaatgca tccctttcac aagtggctgc tttgtggagt      6180
     caatggcagt tgtacagaac tcaatccctt gatttttatc cagggaggag cagttggaaa      6240
     ggcttctttt actggcatct caagatttgc tcagtattgg ggaatacatg ctgcctccct      6300
     ggactactta tggatatact atataatacc cagtgtagag atcactgggt tcaataaaac      6360
     tttgataaac cagactaatt atctacctac cccagtctgt gtttaccccc ctttcttgtt      6420
     tattctttca aatgattcat ttgaagactg tttaaatgat tcttgttgga tttctcaatg      6480
     ttgggatgta acaaaggaca cccgcgccat ggtggcccgg atcccacgtt ggatccctgt      6540
     tccggtggaa acaccctcca ccttatccct gtttagacaa aaaagagatt tttggcatta      6600
     ctgctgccgt gatcatagca atttcagcca gtgcagctgc tgctacagct gcagggtacg      6660
     ctatggctag tacggtccaa gcaggcacaa aattaaatca gctttcagtc gatctgactg      6720
     atgccatcaa tgtccaaact tctgctagtg cccagttgaa gggagggctg atgattttga      6780
     atcagcgcct tgatctggtt gaggaacaga ataagtgttc tataccagtt ggcccagttg      6840
     ggttgtgaaa gaaaattggg tgctctgtgt attaccagtg tccaatatga aaattttact      6900
     cgtgcagcta atctgtctag acagctttcc ttgtatcttg caggaaattg gtccgaagga      6960
     ttcgatgaga ctcttgaggc cctgagggcg gcagttttaa ggatcaactc gacgcgagtg      7020
     gacctgtcat tgacagaggg cctctcctcc tggatttcat ctgcattttc ttattttaag      7080
     gaatggggtg gggggtagtt ttaatttggt gctgccatct gctgtggact tgtgttcatg      7140
     ctctggttgg tttgcaagct cagagcccaa caaaaacgtg acaaggtcgt tattgctcaa      7200
     gcacttgcag ccattgaaca aggggcctcc cctgaaattt ggctatccat gcttaagaat      7260
     taaatggcat ttgagttctc tgctattgca tcccacggat ttgtggatcc attgcacctg      7320
     ggatgagaga tactcaacgc tcattgatca gcacttgcac ttcgctgagg tttcctcttg      7380
     cacgcgatag ggtgatcatg atttccccac taattcattt tttggctggc ctcttttata      7440
     gagttcgccc taggtcattt agcagttact gtcacacagt actgtggtat ccagagacgg      7500
     gcaactttcc tcatgtacag accaacctaa gacacggggc ccggtggcga tagggttacc      7560
     ctatgacagg aaaggctgtg acattggagg aatgacctaa gacaggagcc acagcagatg      7620
     gacataactg cagaggccta gaccagcctc aaattttaat aaaaactaaa aagggggaga      7680
//
ID   LX4         repbase;    DNA;    ROD; 176 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 3, Created)
DT   22-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Myomorpha L1 3' end - a consensus.
XX
KW   LINE; L1 family; 3'-end; RMER7; LX4.
XX
OS   Murinae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae.
XX
RN   [1]
RP   1-176
RA   Chopra V., Jurka J.;
RT   "LX4.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 176 BP; 31 A; 36 C; 78 G; 31 T; 0 other;
     gatcccgttc ccctaactgg gctgccttgt ctggcctcag tgggagagga tgtgcctagt        60
     cctgcagaga cttgatgtgc cagggtgggg ggatacccag ggggggctcc ccctctcaga       120
     ggagaagggg aagggggaat ggggggaggg acttgtgagg gggggactgg gaggag           176
//
ID   MER121      repbase;    DNA;    ROD; 391 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   04-JUL-2006 (Rel. 6.04, Last updated, Version 3)
XX
DE   Interspersed repetitive element - a consensus.
XX
KW   Interspersed Repeat; MER121.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-391
RA   Jurka J.;
RT   "MER121.";
RL   Direct Submission to RR (SEP-2000).
XX
RN   [2]
RP   1-391
RA   Kamal M., Xie X., Lander E.S.;
RT   "A large family of ancient repeat elements in the human genome is
RT   under strong selection.";
RL   Proc Natl Acad Sci U S A 103(8), 2740-2745 (2006).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 391 BP; 120 A; 68 C; 62 G; 139 T; 2 other;
     ccatctaaat tagggatggg tgaactcgat gtttggggtt catccaaaca tctcaaayta        60
     tttttcaaat gttttgggtt tggcaaaacc caaaacacat tttgccaagc actttttccc       120
     ttaattttta aacccatgtg tattttaagg gaaatttaat ccatatgttt ctgattcatt       180
     tacacttaac tcatcaaaat gttgttttgt aagagctatt tgatgtccaa gaagccttat       240
     gagccttttt tataagcctt tttaagcctt ttttctttga aacaggaagt tatrttttgc       300
     caagagtaaa tagaacttga accccaaaag gttcaagttc agtttgaaac tcaaaaccca       360
     caaagttttg aatgggttct aaacttggca a                                      391
//
ID   MER121      repbase;    DNA;    ROD; 391 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   15-FEB-2006 (Rel. 6.04, Last updated, Version 2)
XX
DE   Interspersed repetitive element - a consensus.
XX
KW   Interspersed Repeat; MER121.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-391
RA   Jurka J.;
RT   "MER121.";
RL   Direct Submission to Repbase Update (SEP-2000).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 391 BP; 120 A; 68 C; 62 G; 139 T; 2 other;
     ccatctaaat tagggatggg tgaactcgat gtttggggtt catccaaaca tctcaaayta        60
     tttttcaaat gttttgggtt tggcaaaacc caaaacacat tttgccaagc actttttccc       120
     ttaattttta aacccatgtg tattttaagg gaaatttaat ccatatgttt ctgattcatt       180
     tacacttaac tcatcaaaat gttgttttgt aagagctatt tgatgtccaa gaagccttat       240
     gagccttttt tataagcctt tttaagcctt ttttctttga aacaggaagt tatrttttgc       300
     caagagtaaa tagaacttga accccaaaag gttcaagttc agtttgaaac tcaaaaccca       360
     caaagttttg aatgggttct aaacttggca a                                      391
//
ID   MT2C        repbase;    DNA;    ROD; 322 BP.
XX
AC   .
XX
DT   25-APR-1997 (Rel. 3, Created)
DT   25-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Long terminal repeat of retrovirus-like element; MTE3; MT2C.
XX
OS   Sciurognathi
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia.
XX
RN   [1]
RP   1-322
RA   Wilkie M.T., Palmiter D.R.;
RT   "Analysis of the integrant in MyK-103 transgenic mice in which
RT   males fail to transmit the integrant.";
RL   Mol. Cell. Biol 7(5), 1646-1655 (1987).
XX
RN   [2]
RP   1-322
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. dissertation, Univ Southern California, 1995, , pp
RL   220-224..
XX
CC   [2] (Consensus)
XX
SQ   Sequence 322 BP; 83 A; 62 C; 79 G; 96 T; 2 other;
     tgtagtggct attcctggtt gtcaacttga ctatatttgg aatgaactac aatccagaat        60
     tggaaggctc accagtgacc ctaatctgga ggctgggaga tacaagtttc tgacctggat       120
     cttggtatgg agatcttgag gcatagtggc tatggattcc agaagattaa ggcagggaga       180
     tctttgagtt caaggtcatc gcctgcttgc ttcgtgagac tgagtaactg ctagatcctt       240
     ggacttccat tcacagctrc nactgaacca ttgttgggaa ttggactgca gactgtaagt       300
     catcaataaa ttcctttact at                                                322
//
ID   LINE3_RN    repbase;    DNA;    ROD; 600 BP.
XX
AC   M13922;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   25-APR-1997 (Rel. 3, Last updated, Version 3)
XX
DE   Rat repetitive sequence homologous to 3' end of LINE repetitive
DE   element.
XX
KW   LINE repetitive sequence; long interspersed element; RNLINE3;
KW   LINE3_RN.
XX
OS   Rattus norvegicus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Rattus.
XX
RN   [1]
RP   1-600
RA   Shore K.S., Bacheler T.L., de Riel K.J., Barrows R.L.,
RA   Lynch J.M.;
RT   "Cloning and characterization of a rat-specific repetitive DNA
RT   sequence.";
RL   Gene 45, 87-93 (1986).
XX
DR   GenBank; M13922; Positions     297     896.
XX
SQ   Sequence 600 BP; 215 A; 123 C; 170 G; 92 T; 0 other;
     gggaatagag aggcaaagat taaaacagac acagaaggaa cacccattca gagcctgccc        60
     cacatgtggc ccatacacat acagtcatcc aattagacga gatggatgaa gcaaagaagg       120
     gcaggccgac aggagccgga tatagatcgc tcctgagaga cacagccaga atacagcaaa       180
     tacagaggcg aatgccagca gcaaaccact gaactgagaa taggatcccc gttgaaggaa       240
     tcagagaaag aactggaaga gcttgaaggg gctcgagacc ccatatgtac aacaatgcca       300
     agcaaccaga gcttccaggg actaagcaac tacctaaaga ctatacatgg actgaccatt       360
     gactctgacc ccataggtag caatgaatat cctaataaga tcaccagtag aaggggaagc       420
     cctgggtcct gctaagactg aacccccagt gaacaagatt gttgggggga gagcggcaat       480
     ggggggagga tggggagggg aggggaaggg ggagggatta gggggatgtt tgcccggaaa       540
     ccgggaaagg gaataacact cgaaatgtat ataagaaata ctcaagttaa ttaaaaataa       600
//
ID   MYS1_PL     repbase;    DNA;    ROD; 2501 BP.
XX
AC   X02855;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Mouse mys-1 transposon.
XX
KW   Repetitive sequence; Long terminal repeat; transposon;
KW   Tandem repeat; direct repeat; mys repetitive sequence; PLMYS1;
KW   MYS1_PL.
XX
OS   Peromyscus leucopus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae;
OC   Sigmodontinae; Peromyscus.
XX
RN   [1]
RP   1-2501
RA   Wichman A.H., Potter S.S., Pine S.D.;
RT   "Mys, a family of mammalian transposable elements isolated by
RT   phylogenetic screening.";
RL   Nature 317, 77-81 (1985).
XX
DR   GenBank; X02855; Positions      21    2521.
XX
SQ   Sequence 2501 BP; 710 A; 532 C; 462 G; 797 T; 0 other;
     tgttgctgga gggcttctct ccaggttccc caagccccgc agtcccacaa tccatttata        60
     aaataatcac tcagacgctt atatcactta taaactgtat ggccgtggca ggcttcttgc       120
     taactgttct tttatcttaa attaacccat ttttataaat ctatagcttg ccacgtggct       180
     ggtggcttac cggcgtctct acatgctctt ctcctggcgg tggctgcagt ctctcttcct       240
     cagcctcccg cttcccagaa ttctcctctc tccttgtccc acctacctcc tgcctggtca       300
     ttggccatca gtgttttatt tacatagagt gatatccaca gcacttcccc tttcttcttt       360
     ttttaaaaag gaaggtttta actttaacat ggtaaaatta catataacaa aacaattacc       420
     gagcaagaat tatagttaca atattaaaga agatgtccta tctatcttat atttgtgagt       480
     ttaaggtttt atagctaact tatcttttat cataactgag gaaattacga ctatctagcc       540
     ttcaaccaca tcaaagacct gagaaggaac ataatggtac ctgagaaatg gtagacggat       600
     gcaagcaact tcgggaatct tgcaagagta gaccaagaca gctggcagcc tggacagtca       660
     cctgatgttt ctcagcattg ttggtgcatt caaattggct acaggcctag agtatctgac       720
     agaccatttt cagaagcagg aattctgaga gaccatctta ccctgtcttg gcagagtaca       780
     gtggtcgctt tccttgtgtc ccgcttgtcc agaaaggaca gcattgcatt tgtactgtca       840
     gccgtcaagg caagggcagt tctttgccca gtaggccatt ttgtgccaaa aagacaaact       900
     tccaaatgga aatgtcttag aagcccaaca ttctctcggg atcaattggt gcagccagga       960
     gcaattgtgt ctcacatcaa cagaattcta agttatttaa atgccatatt ttctaggtct      1020
     atgaagtgtt tgaagattac ctatctatct gaaatatatc tatgtatacc tagaagactt      1080
     aactaacatg gctacagata tgattatcat agatgactaa ttattaacct attttttaat      1140
     tatccattac aattttaaat gagttatata aacataatac ctcaaacaag aatagaaata      1200
     tatatataca gtataacaaa attaacttca agtttgtatc aatgaactaa aatttatacc      1260
     aatgtaaaac attttaaaca taaactaaaa tctataccaa tgtaaaacat tttaaacaag      1320
     ttgttcttta aaagtaggtt cattaatcta cccttttatc ttatcatctc catatcctcc      1380
     tatatatcat atcccctttt cttttttaga aagagatcac atttataatc aacctgtttt      1440
     aaataaaaat attggttttt ctctgtccca caccagaggg ctcttctgat ttgggacaca      1500
     agaatctctt aaccattttt ttttttttta aagcaatatg tctgggttta gagggggagt      1560
     gagccaattc cacctctaaa gccagcttgg tatatttggg aatttgggcg tagcatctct      1620
     tactgcttcc tgctggaggg gggcgctgta tcttatgggg acgcaaagaa aattttagac      1680
     ctatggggta gccgtgaggc tgtattgtgt gaaccagttg ccttgaaacc gatctggatg      1740
     ttggatcatc tgggccatgg tgtcatcgga gtcctttcag ggggtcttgg ctggtgaaac      1800
     ctgatgtatc ttaatctgga acaagtccac agcctctggc tttctgtgga aacaaaagca      1860
     gaacctcttt tccaaagtaa catatcctta tatccaaatt ttgaagtcaa ggtaccttta      1920
     aaatatacat tttggcataa ctcaacagct tttgtaatca aatgtttttc tttagttatg      1980
     aatatcaaag agaacataat ccagattctc tgtgtggtag ccatctttat gtggcttatg      2040
     ttttatatta ccttgagcct tgagcctatt gctttaaact gtaccattgt aagcgtgaaa      2100
     cggcgctgtg gctgctggct ccgcccactt cagcttccca acatggcagt ggtacatttt      2160
     ccgccagctc tgggagtcat caagtctcag aaatagtggg tctaagcttt tatcaaagca      2220
     gcgtgtagcc cagaaacctc tttttttttt ttttaaaaaa aaaataatag taaagactaa      2280
     atctaccaca cagcttaatt tgccgctggc agatgcctca tttccgccat actgccggtc      2340
     agacgcaccc gccaggaacc cgccagtgtc caaacttgcg ttttgccgca tctagctgcc      2400
     gtataagaca agaagcagga acctggtttt ggctctgttt agaattggtt attaaatatt      2460
     ctcaggttta aggtggaaac tcgagccgtt gggcgccatt t                          2501
//
ID   RLTR6I_MM   repbase;    DNA;    ROD; 7778 BP.
XX
AC   .
XX
DT   30-JAN-2004 (Rel. 9, Created)
DT   30-JAN-2004 (Rel. 9, Last updated, Version 1)
XX
DE   Mouse family of LTR retrotransposons - a consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR; RLTR6I_MM;
KW   RLTR6_MM.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RA   Karolchik D., Baertsch R., Diekhans M., Furey S.T., Hinrichs A.,
RA   Lu T.Y., Roskin M.K., Schwartz M., Sugnet W.C., Thomas J.D.,
RA   Weber J.R., Haussler D., Kent J.W.;
RT   "The UCSC Genome Browser Database.";
RL   Nucleic Acids Res 31, 51-54 (2003).
XX
RN   [2]
RP   1-7778
RA   Pavlicek A., Jurka J.;
RT   "RLTR6I_MM - a family of autonomous LTR retrotransposons.";
RL   Direct Submission to Repbase Update (JAN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the UC Santa Cruz
CC   genome annotation. Distantly related to RLTR4I_MM and HERVR. LTRs
CC   listed as RLTR6_MM.
CC   RLTR6I_MM_ORF: 2371-3619 (416 aa) pol (partial)
CC   MVIGATGSKFYPWTTKRALQINKNIVTHSFLVIPECPAPLLGRDLLTKLKAQVQFTSEGPQVSWGKAPVA
CC   CLVLNTEEEYRLHEEQPKNAVSSGWLTAFPNVWAEQAGMGLAKQVPPVVVELKADATPISVKQYPMSKEA
CC   REGIRPHIQRLLGQGVLVACQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVLDIHPTVPNPYNLLSSLP
CC   PERTWYTVLDLKDAFFCLRLHPKSQLLFAFEWRDPEGGQTGQLTWTRLPQGFKNSPTLFDEALHRDLAPF
CC   RARNPQLTLLQYVDDLLVAAASKELCHQGTERLLAELSDLGYRVSAKKAQICQTEVTYLGYTLRGGKRWL
CC   TEARKKTVMMIPSPTTPRQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEGVSLSSKERRTIPESF
CC   RLTR6I_MM_ORF: 5718-7245 (509 aa) env
CC   MKKTTTTIGQWQPLTILLSFVCAAGATLDLGNLNPHAPIQQSWDVLNEKGNIVWATTAVHPLWTWWPDLT
CC   PDICKLVAGSPNWDLSDHTDLSNPPPEERCVPNGIGSTYGCSGQFYRANLRAAHFYVCPGQGQSKRLQQE
CC   CGGASDYFCGKWTCETTGDAYWKPSSKWDLITVKRGSGYDKSNEGERNPYKYQESGCAFKNRPSGPCKDK
CC   YCNPLRIRFTENGKQHRLSWLKGNRWGWRVYIPLRDPGFIFTIRLTVRDPAVTLVGPNKVLIEQGPPVVL
CC   APPKVPTVPAPPTPQPNTVVPSLGTNTPLIKPTLASPPPLGTENRLVSLVQGAFLVLNRTNPNMTQSCWL
CC   CYASSPPYYEGIAQIRTYNITSDHSQCLWGENRKLTLAAVSGRGLCLGRVPQDKGHLCNQTQNIQSSKSG
CC   QYLVPPLDTVWACNTGLTPCVSMSVFNSSKDFCILVQLIPRLLYHDDSSFLDKFDHRVPLEKRTRYLNFG
CC   SSIRIGSSSWSRYRNRCLN.
XX
SQ   Sequence 7778 BP; 2075 A; 1952 C; 1966 G; 1785 T; 0 other;
     cagcgcgacc acccagaggt cctagaccca cttagaggta agattctttg ttctgttttg        60
     gtctgatgtc tgtgttctgt ttctaagttt ggtgcgatcg cagtttcggt tttgcggacg       120
     ctcagtgaga ccgcgctccg agagggaacg cggggtggat aaggatagac gtgtccaggt       180
     gtccaccgtc cgttcaccct gggagacgtc ccaggaggaa caggggagga ccagggacgc       240
     ctggtggacc cctttggagg ccaagagacc atttggggtt gcgagatcgt gggtttgagt       300
     cccacctcgt gcccagttgc gagatcgtgg gttcgagtcc cacctcgcgt tttgttgcga       360
     gatcgtgggt ttgagtccca cctcgcgcct tgttgcgaga ccgtgggttc gagtcccacc       420
     tcgcgtttgg tcacgggatc gtgggttcga gtcccacctc gtgcagaggg tctcaatcgg       480
     ccggccttag aaaggccatc tgattctttg agttgcttgt ggtcgacgca gagtcgccgc       540
     cgtttctggt ttcttttttg tcttagtctc gtgtccgctc ttgttgtgac tactgttttt       600
     ctagaaatgg gacaatctgt gtccactccc ctttctctga ctctggagca ttggaaggag       660
     gtgcgggtca gagcccacaa ccagtcggtg gaggtcagaa agggtccgtg gcagaccttt       720
     tgcgcctccg agtggccaac gtttggagtg ggctggccac ctgagggtgc ttttgacttg       780
     tcactaatcg ccgccgtcag gcgaattgtt tttcaggagg aagggggtca ccctgatcag       840
     atcccctaca ttgtgacctg gcagaatctc gtccaattcc cacctccttg ggtcaagcct       900
     tggaccccaa actcttcgaa actgacggtt gcttttaggt tgcccagtct gatgcaagcc       960
     ggaaagtccg gcccgtcagc accccccaag atctatccag agattgacga cctcctctgg      1020
     atggactccc aacctccccc ttaccccctg ccccaactcc agagagcagc caccgggttg      1080
     cagcggcccc accacatggg accagtagcc tagagagaaa tgggctcagg gatccggagc      1140
     aaacgggggg tggtccctga ggactcggag gcgccgaggc cgaagctcct ggggaaaagg      1200
     aaggggggcc tgattcaaca gttgccttgc cactcagagc acatgtggga gggccagctc      1260
     ccaggcacct aatgatctca ttcctttaca gtactggcct ttttcctctt ctgatttata      1320
     taattggaaa actaaccacc ctcccttctc agagaagtac ccctctggtc ttactgggct      1380
     ccttgagtca cttatgttct cccatcaacc cacttgggat gattgtcagc agcttttgca      1440
     ggttcttttt accacagaag aaagagaaag aatcctgagt tgctggaggc gagaaaaaat      1500
     gttctgggag aggacggcac acccactgcc ctccctaacc tccagtggac gaggctttcc      1560
     ccttgaaccg ccccaactgg gactacaaca ccgcggaagg taggggacgc ctccttgtct      1620
     aatcgccgga ctctagtggc agtctcgtct cagaggagcc gctagacggc ccaccaattt      1680
     ggctaaggta agagaggtct tgcaggggca gactgaacca ccctcagtct tccttgagcg      1740
     tctaatggag gcatatagga gatacacccc ttttgacccc ttgtcagagg ggcagagagc      1800
     cgctgtagcc atggccttca ttggtcagtc cgctcccgac attaagaaaa agctgcaaag      1860
     gctggagggg ctccaagatc atacgctcca agatttagta aaagaagcag agaaagtcta      1920
     tcataagagg gaaacagaag aagagaggca ggagagagag aagaaagaaa tggaggagag      1980
     ggaaaataga cgggatcgcc gtcaggagag aaatctgagt aaaattttgg ccgcagttgt      2040
     gaatgataga cagtcaggaa aaggtaaaaa agggctcctg ggcaacaggg cagtgaaacc      2100
     gccaggtggc agaaagataa ccacttggaa aaagaccaat gcgcctattg caaagagaaa      2160
     ggacactggg ctagagattg ccctaaaaaa cgggagcgat ccaaggtcct gaccctagaa      2220
     gatgattagg gaagtcgggg ctcagacccc ctccctgagc ctagggtaac tttgtccgtg      2280
     gaggggaccc ccgtcaactt cctgatagac accggagcag agcattcagt actcactagc      2340
     cccctaggca agctaggctc caaaaagacc atggtaattg gagccactgg tagtaaattt      2400
     tacccctgga cgaccaaacg agctcttcag ataaacaaga atatagtgac ccactccttt      2460
     ctggtgatac ctgagtgccc tgctcccctc ttggggcgcg atctgctaac caaactaaag      2520
     gctcaagtcc aatttacttc agaaggccca caagtaagct ggggaaaggc ccctgttgcc      2580
     tgccttgtcc tcaacacaga ggaagagtac cggttgcatg aagaacaacc caaaaatgca      2640
     gtctcttcag gttggctaac tgcgttcccc aatgtctggg cagaacaagc aggaatgggg      2700
     ttggctaaac aagtgcctcc ggttgtggta gaacttaaag ctgatgccac ccccatttcg      2760
     gtaaaacaat accccatgag caaggaagct agagaaggca tccggcctca tatccagagg      2820
     ttgctaggcc aaggagtttt agtggcctgt cagtccccct ggaatacacc acttctgccg      2880
     gttcgaaaac cagggaccaa tgactatcgc ccggtgcaag acctccggga ggttaacaaa      2940
     agggtcctgg acattcaccc cacagtcccg aacccgtaca atttattaag ctctctccca      3000
     cctgagagaa catggtatac agtcctggac ttaaaagatg ccttcttttg cctgcgtttg      3060
     caccctaaga gtcagctcct gtttgctttt gaatggaggg acccagaggg cggacagact      3120
     ggtcaactaa cttggactag gctaccacag gggttcaaaa attcccccac cctgtttgac      3180
     gaggccctcc atcgggatct cgcgcctttt cgcgctcgaa accctcagct taccctacta      3240
     cagtatgtgg atgatctctt ggtcgcggcg gcctcgaagg agctgtgtca ccagggaact      3300
     gagaggctcc tcgcagaact gagtgacttg gggtatcgag tttcggctaa aaaggcacaa      3360
     atctgtcaaa ctgaggtaac ctacctgggg tataccctcc gagggggcaa aagatggctc      3420
     acagaggccc ggaagaagac tgttatgatg atcccatcgc caactacccc acggcaggta      3480
     cgtgagtttc tggggactgc tggcttttgt agactctgga ttccaggctt tgcaacccta      3540
     gcagcacctc tatatccttt gactaaggaa ggggttagcc tttcgagtaa ggaaagaaga      3600
     acaatcccag agagcttttg aggctatcaa gtcgtctcta atgactgtcc cccgcgctag      3660
     cattaccaga cttgactaag cctttcgtcc tatatgtgga cgagagagcg ggtgtagcca      3720
     ggggagtgtt gacacaagca ctgggaccct ggaagagacc tgtagcctat ttgtcaaaaa      3780
     aattagatcc ggttgctagt ggatggccca catgtctgaa agctattgcg gcagtagccc      3840
     tgctgatcaa agatgctgac aaattgacaa tgggacaaca ggtgacacat gttgtagccc      3900
     ctcatgcctt agaaagtatc gtgcgacagt ccacctgaca gatggatgac aaatgcccga      3960
     atgacacact atcagagcct gctgctaaat gagcgtgtaa cctttgcgcc ccctgccatc      4020
     ctcaatccca gctacccttc tccctctaac aaatgattcc gtcccagtac atcaatgtac      4080
     tgacatcctc gctgaagaaa ctgggaccag aagtgacctg aaggatctga ccaaccctgg      4140
     cctggagctc ccagttggta cacggacggc agcagtttcc tgatagaggg gaagcgaaag      4200
     gctggagcag cagtgcggtg gtggacggga aaaaggtaat ttgggcaagc gctttgcctg      4260
     aaggaacttc ggcacaaaag gctgaactta tagcgcttat acaagccctc cgagaggcta      4320
     aaggtaagat cgttaacatc tacactgaca gccgctatgc ttttgctacc gcacacatcc      4380
     atggggccat ctacaggcag cgagggctat tgacatcggc tggtaaagac attaaaaaca      4440
     aagaagaaat tctggccctg ttggaagcca tacatgcacc taagaaggta gccatcatcc      4500
     actgccccgg ccaccaaaga ggagaagact tggtggccaa gggcaaccga atggcagact      4560
     tagtcgcaaa acaagttgct caaggggcca tgatcttaac tgaaaaaggt gatccgccca      4620
     aaagccctga ggacgagagg tataacataa aagagctatg gtggaccagt gatcccctcc      4680
     catatttttt tgaagggaaa atagaattaa ctcccgaaga aggaataaaa tttgtgaaag      4740
     gactacacca attcacccac ctgggagttg aaaaaatgat gagactaatt aaaaattccc      4800
     gataccaagt ccccaacctg aagtcagtgg ctcaaaagat tatagactcc tgcaaaccat      4860
     gtgcattcac taatgcaact aaagcctaca gagaacctgg aaagagacaa cggggagacc      4920
     atcctggagt gtattgggag gtagacttta ctgaagttaa acctggaatg tatggtaaca      4980
     agtatctgtt agtatttgta gacacctttt caggatgggt agaggcattt cccactaaaa      5040
     ctgagactgc ccagattgtg gccaagaaga tccttgaaag aaatcctgcc aagatttgga      5100
     atccctaagg taatcgggtc cgacaatgga ccagcctttg ttgcccaggt aagtcagggc      5160
     ttggccactc agttgggcat cgattggaaa ttacactgtg cttaccgccc tcaaagctca      5220
     ggacaggtag agaggatgaa tagaacctta aaagagacct tgactaaatt agccattgag      5280
     accggcggaa aagacttggg tggctctcct tcctcttgcg ctcttccgag cccgaaacac      5340
     tcctggtcgt ttcgggctca ctccttttga agttctgtat ggaggacctc cccccttaat      5400
     ggaagctggt ggaacattag tttccgactc tgaccctgtc ttaccctcct ctttgcttat      5460
     tcatttaaag gccctagaag tgattaggac ccagatttgg gaccaactga aagcagccta      5520
     taccccaggg accaccgcag taccccacgg gttccgagtt ggagacaaag tcttggtcag      5580
     acggcatcga accggcagcc ttgagccacg gtggaaggga ccctatttgg tgttactgac      5640
     aacccctact gcggtaaaag ttgacggaat cgcctcctgg atccacgcct cccacgtcaa      5700
     gagggccgcc agtcaagatg aagaaaacca cgacgacaat tggacagtgg cagccactga      5760
     caatcctctt aagcttcgtc tgcgccgcag gcgccactct agacctaggg aaccttaacc      5820
     ctcatgctcc aattcaacag tcctgggatg tgcttaatga aaagggaaac attgtatggg      5880
     caaccactgc agtccatccc ctctggactt ggtggcctga tctcacgcct gacatctgta      5940
     agttagtggc aggatccccc aattgggacc tctcagatca tactgatctt agcaacccac      6000
     cccctgagga gcggtgtgtc ccaaatggga tagggagcac atatgggtgt tcggggcagt      6060
     tctaccgagc taatcttaga gctgcacatt tttatgtttg ccctggtcag ggtcagagca      6120
     aaaggcttca acaagaatgc gggggggcat cagattactt ttgtggtaaa tggacatgtg      6180
     aaacgacagg ggatgcttac tggaagccct cctctaaatg ggacctaatc acggtaaaac      6240
     gaggtagtgg ctatgataag tcaaacgaag gagaaagaaa cccctataaa tatcaagaga      6300
     gtgggtgcgc ttttaaaaac agaccctcag gaccatgcaa agataaatac tgcaaccccc      6360
     tacgtataag gttcaccgag aacggaaaac aacaccgtct gagttggctt aaaggaaata      6420
     ggtggggttg gcgagtatac attccactaa gagatcctgg gttcattttc acgatcagac      6480
     tgacagtgag agacccggca gtgacactcg tagggcccaa caaggtcctt atagaacagg      6540
     gccccccagt cgtactggct cccccaaagg tcccgactgt accagctcca ccaactccac      6600
     agcccaacac agtggtaccc tccctaggaa ctaatactcc cctcataaag cctaccttgg      6660
     cttccccacc gcccctagga acagagaacc gtctggtcag tctagtccaa ggagcttttt      6720
     tagttctaaa tagaactaac cctaatatga ctcaatcatg ctggttatgc tatgcctcta      6780
     gcccccctta ttatgaagga atagctcaga tcaggactta taatattact tcagatcatt      6840
     ctcaatgcct ttggggagaa aacagaaagt tgactctagc agcagtttca ggaagagggc      6900
     tttgtctggg ccgggtacct caggataaag ggcacctctg taatcagacc cagaacatcc      6960
     agtctagcaa aagtggtcag tatctagtgc ctcccctaga cacagtgtgg gcttgcaata      7020
     ccggtctcac tccttgtgtg tctatgtctg tttttaatag ttccaaagat ttctgcattt      7080
     tggttcagct tattcccaga ctcctgtatc atgatgatag ctctttttta gataaatttg      7140
     accatcgggt cccgctggaa aagagaaccc gttaccttaa ctttggcagt tctattagga      7200
     ttgggagtag cagctggagt aggtacagga accgctgcct taattaagac cccccaatac      7260
     tatgaagaac tacgtgcagc tatggatatt gatcttagaa ctatagaaca gtctataacc      7320
     aaattagaag aatctttaac ttccctgtcc gaagtggtgc tgcaaaatag aaggggatta      7380
     gacttattat tccttaaaga aggaggactc tgtgctgcct taaaagaaga atgttgtttt      7440
     tatgttgacc attcaggagt aatcaaagat tctatggcta aacttagaga acgcctagat      7500
     atacgtaaaa gagaaagaga aagccaacaa ggatggtttg aaagctggtt taataagtcc      7560
     ccttggctca ccactctcct ctccactata gcaggacctt taattacact tatgcttttg      7620
     cttacttttg gcccatgcat ccttaataag ttagtagctt ttattagaga aaggataaat      7680
     gcagtacaag ttatggtact aagacaacaa tatcgggtcc ttcaggaggt tgaaaactcg      7740
     ttctaagatt agaactattt actagaagaa gtggggaa                              7778
//
