ID   CSP2137     repbase;    DNA;    SPU; 226 BP.
XX
AC   J01197;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2137.
XX
KW   Repetitive sequence; CSP2137.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-226
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01197; Positions       1     226.
XX
SQ   Sequence 226 BP; 62 A; 45 C; 30 G; 89 T; 0 other;
     aattcgtttg ataaaattat ggagagctcg catgatacgt catagagttg ccaatttgtg        60
     tttgattgat cacaacttca aaaatcctaa cttcattatt tttaatcgga atttgctcaa       120
     actttcactg acttgtttct ctcatttttc tactcctatt taaactaact taatttcagg       180
     gtggactttc cctttaaagc ctcgttacga attatttcat tcaccg                      226
//
ID   Transib-N1_SP repbase;    DNA;    SPU; 884 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib-N1_SP is a family of nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; Nonautonomous;
KW   Transib-N1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-884
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology0-0 (2005).
XX
CC   [1] (Consensus)
XX
CC   Transib-N1_SP is a family of nonautonomous DNA transposons that
CC   belongs tothe Transib superfamily. The genome harbors ~100 copies
CC   of Transib-N1_SP that are ~94% identical to the consensus
CC   sequence. These elements are characterized by 5-bp target site
CC   duplications and 60-bp terminal inverted repeats (2 mismatches).
XX
SQ   Sequence 884 BP; 270 A; 167 C; 166 G; 279 T; 2 other;
     cacagtgggc cagggaggaa ccaaagtgcg ccaaaactca tttttggtga tttatttttt        60
     tcaatttttt ttcttgccca gttgaaaggt aatacattga ggaatacctc agtaaaatat       120
     ttaattccgg tatgcacaat aagggtataa atttactcct tcaaacagca aaatcctaca       180
     tattcacagt tttagtgcaa aagtgactta ttttataaat ctttcaattt aacatgaagt       240
     ttttaagtta ttgatatgaa attgctctca catattcctg atagttcatt tcgttgcatg       300
     aatgggttaa aattaataga aacacaatct tcatgatata ttatagggta attcactgaa       360
     aaatggacta attatccatg tttttttata aatccagagg aaatgtttag atctccgcag       420
     agttccgctt aaattttaat accaccattt tttctgatgt ctaagcttya agttgatacc       480
     aaatttggct gcccgatctt gcccgttgtt atgttagagc cgatttccct tgccacattg       540
     ccccgaaaaa tgtggggttt ttttkggtcc gcggctgaat catgaaggat tcgcggtcat       600
     aaatcacggc gcgtgggggc gcgtgacact tgttctgaca ccgcggacca aaataaacac       660
     attttttcgg ggcaatgttg caaggaaaac ggctctaaca taataacggg cagaatcggg       720
     cagccaaatc tggtatcaac ttaaagctta gacatcagag aaaatgttgg taataaaatt       780
     taagcggaaa tccctggaaa tccaaacatt tcctctggat ttataaaaaa taaatccccc       840
     aaaatgagtt ttggcgcact ttggttcctc cctggcccac tgtg                        884
//
ID   SPRP2       repbase;    DNA;    SPU; 247 BP.
XX
AC   K01794;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus histone H1-H4 spacer repeat.
XX
KW   Repetitive sequence; SPRP2.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-247
RA   Vitelli L., Weinberg S.E.;
RT   "An inverted sea urchin histone gene sequence with breakpoints
RT   between TATA boxes and mRNA cap sites.";
RL   Nucleic Acids Res 11, 2135-2153 (1983).
XX
DR   GenBank; K01794; Positions     247       1.
XX
SQ   Sequence 247 BP; 50 A; 64 C; 71 G; 62 T; 0 other;
     cggacgaccc gggactgtct cctcccacgt acgcaacaat gccttatatt gatggcgttg        60
     ccgagcctca accggattgc agcgagtatt gttacaccat tgcggacttg ggtgacgaga       120
     ttcggcatca ttcggtatgc gggactggag tgcggagact ccccattcga gtgcgccccc       180
     tcgtggcgag tattcgctag cattattaca tgcatttatg tagagaggcc tgtgttgaat       240
     gctcgag                                                                 247
//
ID   U1_LV       repbase;    DNA;    SPU; 1398 BP.
XX
AC   X01749;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   L.variegatus repeat unit with gene for small nuclear U1 RNA.
XX
KW   Repetitive sequence; LVU1; U1_LV.
XX
OS   Lytechinus variegatus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Temnopleuroida;
OC   Toxopneustidae; Lytechinus.
XX
RN   [1]
RP   1-1398
RA   Brown T.D., Morris F.G., Chodchoy N., Sprecher C., Marzluff F.W.;
RT   "Structure of the sea urchin U1 RNA repeat.";
RL   Nucleic Acids Res 13, 537-556 (1985).
XX
DR   GenBank; X01749; Positions       1    1398.
XX
SQ   Sequence 1398 BP; 429 A; 275 C; 261 G; 433 T; 0 other;
     aagctttcgg gtctactacc aactagagcc catggaacga gatattaaag agagcaaagt        60
     ataattttgc ccaagtaaga cgacgaccga taaaagaaag gttgacccga taacaggatg       120
     cgagtaagct gacgcttatg tcattataat ctgcaacgtc agtaaagtta ttgtgaagtt       180
     catgaatatt cacatcctta cttcttcaca tcttacgtgc aattttgtac ttgttattac       240
     gtttaaatta tagaattaca tggatacgtc attaatgttg ctccagagag gggcacagag       300
     atttgaggtt tctttctctc aaaacttgcc aaaattgtac aaattcataa aatcatgtga       360
     ctgttttctc tttgtagtgt gagatgtttc actgctttct atcgcagata agatttgatc       420
     aagtacggcg accgatggat ggggagcata cttacctggc gcaggggtcg cattgatcaa       480
     gaaggatgca cccccagggc gaggcttgcc attgcactcc ggcttgctga accttgcgat       540
     tcccccaaac gtggggaact cgggcgtaca atttatggta gcggagatct gcgttcgcgc       600
     tatctcctac aattcaacta atgcaaagaa agaaaataaa agctccccga aaaactctga       660
     tggtgacatg aatggactaa tcccttccaa tttttgggga atttcaacct tatcaggttt       720
     ttcaaaccac tagtttcttt attacttaag gggacatgat tggcattcct ttcaataaaa       780
     gctcgggttt aaatccgtgt gacaaaaata gcatactact ttaacatctg cttcatctca       840
     actgcgaaat gtatgtcgaa ataaactttg ctaagttttg aaagattcta atgagattta       900
     aaaaaaatga ttttccggca gattggctcg ctcattttac tcggtcgcaa gtttccgata       960
     aaaaccccct ccaaatagtt ttctcattga aacaacgtca tccaaaatac gtttcaagtt      1020
     aatccttcca atcaatacat attgtaactg ggtatatttt aaaacctatt ggcccatcgt      1080
     tgtttctttt ccatatgaac attagttagt ggttaaaagt tgcatcatga ttcgtaacta      1140
     aaaaaaaata aatgacccgt ttaaagcgtc agcttggacc aaccaacatt ttcgtcacca      1200
     atctataaaa aggtaaaata tccaggtgca tggtcatttc ccaggggtgg agtccaggtt      1260
     attgactact catttaatgt gtatgaacta gtttcgattt tgtggtgcat tttctcttta      1320
     tcccttgata tggaaataaa caatcatttt aactttatcg agatattaag cctcacattt      1380
     cattctaaaa tgagacga                                                    1398
//
ID   TU1         repbase;    DNA;    SPU; 775 BP.
XX
AC   X00146;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus transposable element TU1 fragment.
XX
KW   Repetitive element; transposon; TU1.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-775
RA   Liebermann D., Hoffman-Liebermann B., Weinthal J., Childs G.,
RA   Maxson R., Mauron A., Cohen N.S., Kedes L.;
RT   "An unusual transposon with long terminal inverted repeats in the
RT   sea urchin Strongylocentrotus purpuratus.";
RL   Nature 306, 342-347 (1983).
XX
DR   GenBank; X00146; Positions     609    1383.
XX
SQ   Sequence 775 BP; 188 A; 231 C; 150 G; 206 T; 0 other;
     ggttccatga cacatgctcc gccgacgatt gctccgccga catttactcc gcaaaacgcg        60
     acaattgctc cgcgacattt gctccgcgac atttgctccg acgtcaaatg ctccgccgac       120
     agttgctccg ccgacagttg ctccgccgac aattgctccg ccgacaattg ctccgcctga       180
     agcgacaatt gctccgccga catttgctcc gccgacaatt gctccgccga catttgctcc       240
     gccgaagcgc acctgctccg ccgacatttg ctccgccgac aatgctccgc cgacaacgct       300
     ccgcctgaag cgacaatgct ccgccgactg ctccgcctga agcgacaatg ctccgccgac       360
     attgctccgc cgacaattgc tccgacgaca tgctccgcat gaagcgacac ttgcaccggg       420
     tgacatttgc tccgcgacat ttgctccgcc caaaaagtgt cccattaaat acaaatgcta       480
     ctagtactac gacaaatgct tcgccgacaa tatttttttt tcacgggttg tttttgtttc       540
     tttctttttt tcttcatttt ttgaatgcat ttcatgacat tatgtaaatg aaatgaaatg       600
     aatgaatgtt gataatgtgg gaggaaaagc agtttgccta aaagtcattt cgaatatact       660
     gaaataactt tccatctatc actgtacgtc ccacataata aacactaaac actcattaca       720
     tgtcatggga agtttttttt tttaaagtta gagcagctaa gccacatccc ccgtg            775
//
ID   CR1-11_SP   repbase;    DNA;    SPU; 3780 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-11_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; endonuclease; CR1-11_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-3780
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-11_SP non-LTR retrotransposon from the sea urchin genome.";
RL   Repbase Reports 5(4), 69-69 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-11_SP is a non-LTR retrotransposon that belongs to the CR1
CC   clade.
CC   Copies of CR1-11_SP are ~3% divergent form the consensus
CC   sequence.
CC   The consensus sequence is incomplete due to 5' truncations of
CC   CR1-11_SP elements upon their retrotranspositions.
CC   CR1-11_SP encodes a 986-aa protein (pos. 428-3385) composed of
CC   the endonuclease and reverse transcriptase domains. The 3'
CC   terminus
CC   of CR1-11_SP is composed of the (CAAA) microsatellite.
XX
FH   Key           Location/Qualifiers
FT   CDS           428..3385
FT                 /product="CR1-11_SP"
FT                 /translation="MNSHAHTPDILVDDINESKYYTPQEFKNSFSYKPDNI
FT                 SLLHINSRSLNKNFEYVENLLHSLNNFAFSVIGISETWLHQNSPDMFNLPN
FT                 YKLIRADRKGRRGGGVAFYITQNLNFKIRSDIKLTQAESLFIEINNSNVKN
FT                 VIIGLIYRPPDSNCELFCDELDFYLHKIGDENKHNFILGDFNINFSPSSDN
FT                 SNSTNCMQLMHSYGFFSIINKPTRINPHSSTQIDNIFSNVHNNKTIGGILC
FT                 SEVSDHLPIFLTCECKLSCSKSFDELYRKESKRNIELLKQDLFFEGWAEVY
FT                 NVNDVNTAYKHFSNKLQYYYEKNIPLGKMSNKRNKPRNPWITKGLLKSIQT
FT                 RNRLYKLHLRNPTDTNLNTYKIYRNKLTKLIRTSRRLHFSNKIKKASSNTT
FT                 ATWKIIKEVMGKKTNPPPTDNITLNGTKIHDPSLHANSFNSFFTNIGPELA
FT                 SKINRTHAHFKDYLSNQNQESLFLNPTNPSEIINITQSLNNSKSHGFDRIS
FT                 MSLLKEIMYPLAKPLTHIFNHSLSQGVFPDLLKIAKVNPILKKDDPHEISN
FT                 YRPISLLPSISKVLEKIVHNRLHKFITKHKILNSNQYGFRKNYSTDLALIQ
FT                 IYDKITSAIANKEHVIGIFCDLSKAFDTLNHAILLSKLSHYGIRGQPLLWF
FT                 KDYLTNRRQYVTFNSYDSDPLLIQCGVPQGSILGPLLFLLYVNDIINTSPL
FT                 LSFILFADDTNIFYSHKDLNSLNNTLNYEINKVSDWFKSNKLSLNTKKTHF
FT                 MYFKHHSHNTETPIYIKIDGMLLEKKTNSKFLGVLIDETLTWNDHLHQVTM
FT                 CISKSIGIISKLKFLLPHATLFLLYNSLVLPYITYCNSVWANCGSTKINSI
FT                 FKLQKKAIRICTGSHFLAHTDPLFYKLKTLKIFDLNTTQVAVIMFKYINNL
FT                 LPPSFDNMFRFNNSVHSYSTRISGNFHLTNPKLSITHKSVRHSGPDIWNDF
FT                 PDNIKSCSTIYSLKATLKRQIIQSYAPHSLN"
XX
SQ   Sequence 3780 BP; 1280 A; 774 C; 484 G; 1242 T; 0 other;
     taacatgcat acatttttct cctccgcaca acaaatctct ttgttttgca aaactcctgt        60
     gtcaatcaca gaatccattg ttatagactg aactagtttt gatgagcggg aatgtcaaat       120
     ccctcttttc catttaataa tcgtactccg atttgtcatt attgttatca agcattttgt       180
     ttcttcccag cccctctatt ttgcgtgtca aaaatacacc ctttactcgg gcggtcgggc       240
     tccgctctgt tgctcctaag caattattgt aactgtgacc aagatgggtc ttattgtatt       300
     ttcatttgta ttatattttg aagttacccg cacacttgca cttcgtacac acacaaacgc       360
     accagcatca cacatgcagt tgttcatcct ccaaattttc ggtactttac ataatacgta       420
     tcgttaaatg aattcgcacg cgcacactcc cgatattctt gtcgacgata taaacgagag       480
     caaatactac acaccccaag aattcaaaaa ttcattttct tacaaaccag acaatatttc       540
     acttttacat ataaactcca gaagtctgaa caaaaatttc gaatacgttg aaaacctttt       600
     acactcttta aataattttg cattttccgt cattggaata agtgagacat ggttacatca       660
     gaattctcca gatatgttca atttgcctaa ttataagttg attagggcgg accgcaaagg       720
     aagaagaggt ggcggtgttg cgttttatat tacacaaaac ctaaatttca aaatccgttc       780
     cgatattaaa ctaacacaag cagaatcttt atttatcgaa attaataact caaatgtcaa       840
     aaatgtcatc ataggtttaa tttatagacc ccctgactct aattgtgaat tattctgtga       900
     cgaactggat ttttatcttc ataaaatagg ggatgaaaat aaacacaatt ttatccttgg       960
     tgactttaac atcaacttct ccccctcatc tgataacagt aactcaacca attgtatgca      1020
     gttgatgcat tcatacggct ttttttcgat tattaataaa cccaccagaa taaatccaca      1080
     ttcatcaact cagattgaca atattttttc aaacgtacat aacaacaaaa ccatcggtgg      1140
     aatattgtgt tctgaagtgt ccgatcacct acccatattt ttaacttgtg aatgcaaact      1200
     atcttgcagt aaatcatttg atgagcttta tcgcaaagaa tccaaacgta atatagaatt      1260
     gctgaaacag gatttatttt tcgagggatg ggctgaggta tataatgtaa atgatgtcaa      1320
     tactgcatat aaacatttta gtaacaaatt gcaatattat tatgaaaaga atattccttt      1380
     aggcaaaatg agtaataagc gaaataaacc caggaatcct tggataacga aaggtttatt      1440
     gaaatcaata caaacacgca atcgcctcta caaattacat ttacgcaatc caactgacac      1500
     taacctaaac acatataaaa tttatcgaaa caaattaaca aaactaatcc gtacatcccg      1560
     tagattgcat ttttctaata aaataaaaaa ggccagttca aacactactg caacttggaa      1620
     aattatcaaa gaggttatgg ggaaaaaaac gaatccccca cccacggata atatcacatt      1680
     aaatggcact aaaatacatg atcctagtct tcatgcaaat tcatttaact cattttttac      1740
     gaatatcggc cctgaactcg ccagcaaaat taatagaact cacgctcact ttaaagacta      1800
     tctttccaat caaaaccaag agtctctctt tttaaatccg acaaatccta gcgaaattat      1860
     taacattacc caatctctta acaactcaaa atcccacggt tttgatagaa taagtatgtc      1920
     tctcctaaaa gaaataatgt atccacttgc aaagccttta actcacatat ttaatcactc      1980
     gttatcgcaa ggtgttttcc ctgatctatt aaaaatagct aaagtcaacc ccattctcaa      2040
     aaaagatgat cctcacgaaa ttagtaacta tcgtccaatt tccctacttc caagtatatc      2100
     caaagtctta gaaaaaatcg ttcataatag gctacacaaa tttatcacta aacacaaaat      2160
     actcaattca aatcaatatg gcttcagaaa aaattactca actgacttag cattaattca      2220
     aatttatgac aaaattacaa gtgccatagc taacaaagag catgttatag gtatattctg      2280
     tgacttgagt aaagcatttg atacgctcaa tcacgctatt ctactctcca aactcagtca      2340
     ttacggaatt cggggtcagc cactcttatg gtttaaagat tatttaacaa acagaagaca      2400
     atatgttaca tttaatagtt atgattctga tcctctttta attcaatgcg gtgttcctca      2460
     aggctccatc ttaggtccac tgttatttct tctttatgta aatgatatta tcaatacatc      2520
     cccccttctt tcttttatct tatttgccga tgatacaaat atcttttatt cccataaaga      2580
     ccttaattcg ttaaacaata ctttgaatta tgaaattaac aaagtatcag attggtttaa      2640
     atccaataaa ctttcactta atacaaaaaa gactcatttc atgtatttta aacatcattc      2700
     tcataataca gaaacaccta tatatattaa aatcgatggt atgctactag agaagaaaac      2760
     taattccaag tttttgggtg ttcttataga tgaaaccttg acttggaatg atcatttaca      2820
     ccaagttaca atgtgcattt ccaaaagtat tggaataatc tccaagttaa agtttcttct      2880
     accccatgca accttattcc tactatataa ttcgctagtt ctcccgtata taacatattg      2940
     taatagtgta tgggcaaatt gtggttcgac aaaaattaat tctattttca aactgcaaaa      3000
     gaaagccata cgtatttgta caggttcgca tttcttagct cacactgatc ctttattcta      3060
     taaacttaaa acactaaaaa ttttcgatct gaacactact caagtagcag ttattatgtt      3120
     taagtacatt aataatctgc ttccaccatc ctttgataac atgtttaggt ttaataattc      3180
     cgttcattca tactctactc gcatatctgg aaacttccat cttacaaatc ccaaattatc      3240
     aataacacac aaatctgtta gacattctgg cccggacatt tggaatgatt ttcccgacaa      3300
     cataaagtct tgttcaacca tctactcctt aaaagctaca cttaaacgac aaataataca      3360
     atcatatgct ccccactctt taaattagta taacaaaacc gtgacttatt tattctttat      3420
     catgcaactg cttactgcac ctgcacttgc accgcaccct cttgatcact cagtttttcg      3480
     aagagagtta tgtcgccaat tctttttacg aggccgccat ccatctccag cctaaccgct      3540
     cacgatggtg gtctcctgcg ttctaaatta cctctctaat ttattgaaaa tatttcatat      3600
     tatgttattg tatgcttcgt acatgtttat cgtatgatat aattgtacat gattttttat      3660
     ttaattactt ttgtaaacat tttattcatt gtatttgtta ttgttcgaat ttttgtactt      3720
     tgaatttgaa tttgtatatt tttgaacgca gaaataaaat caatcaaaca aacaaacaaa      3780
//
ID   hAT-1_SP    repbase;    DNA;    SPU; 6306 BP.
XX
AC   Contig26222;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   hAT-1_SP, a family of autonomous hAT DNA transposon in the sea
DE   urchin genome.
XX
KW   Autonomous DNA transposon; HAT superfamily; hAT-1_SP; hAT-N1_SP;
KW   transposase.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-6306
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-1_SP, a family of autonomous hAT DNA transposon in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 246-246 (2004).
XX
DR   BBBCM; Contig26222; Positions     227    6532.
XX
CC   hAT-1_SP is a fossilized copy of an autonomous hAT DNA
CC   transposon. It is flanked by 10-bp terminal inverted repeats
CC   and share common 100-bp and 70-bp 5' and 3' termini,
CC   respectively, with nonautonomous hAT-N1_SP. The 595 hAT-1_SP
CC   transposase is encoded by 3 exons (CDS pos. 2100-3185,
CC   3545-3702, 3967-4507).
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="hAT-1_SPp"
FT                 /translation="MPSKVWRVFTKVSSTTVKCTICDRVLGYKGGSTGAML
FT                 NHMKTHPNSIEDDRQPRLSSFNRQCNPDRAQRISNLIADMIAKDGLPINFV
FT                 EGEGFRALMHDVEPDFTIPSRQTVMRILELKFLEQKTKIKHWMSGCEHIAI
FT                 TTDCWTSLGQEGFMTVTAHGIDKEWIKRSFVLNTSPVASLDDNDEDNDPPL
FT                 PQRHTSQALKSQLREVAQTWEINNKVCGVVHDNAANVRVIGEAVGAPDVPC
FT                 TAHTLQLCVNAGLNSNGQLQRVIGAVSRLVGHFKHSVVASQALTAKQDQHN
FT                 LPKHRLIQSVKTRWNSVYDMFARVTEQRWAITSVLSDERLTLHRDATTLQL
FT                 KDEHWSIVDNMGKTLEPFLVATKVLSSEEHPTASTVLPMITGLLDNFLIVE
FT                 ETDSGIVRQFKETTSEQLKRRFHIKSARERDEDVEIEDVSALHLASALDPR
FT                 YSNLTYLPRAMRNVVKNKLNELIPERDDEEQNADVEQPSTSLDFLITGRRF
FT                 TAPQQQRDSVEEIHTFFDLPVVPSTADAVAWWKANEASFPLLGNVAKRFLT
FT                 IPATSVPSERVFSTAGNIVTKKRSCLLAENVNMLIFLKHNAKSIPLI"
XX
SQ   Sequence 6306 BP; 1980 A; 1156 C; 1244 G; 1926 T; 0 other;
     tagtgctgta accaaacgtt taaccgtccg gtatccgacc gcccatggcg gattccggtt        60
     tgaatttgac ggtttcgttt acccgatttt tttttttttt tttttttttt tttttttttt       120
     tttttttaaa tttgtgtttt tattggaaaa tcaaaagaaa tcacaatatt tacaaataat       180
     ttacacattt agaaacaaaa tcacaaaaca aaaacggaga cttaactgtc gggcatgcat       240
     tggaacattg actaggtttc actttgttta tgaatctaat aaatcaagtt ttgccgacat       300
     tatagtcatc ataagtcagc cccgacttgt gatgttgaat tgtaaagcaa cacaatcaac       360
     tgagaagttg acccgtaaaa ctattaagtg cccagcctaa aaataaaaca gttcaatcaa       420
     aagcctctaa attgtaaaaa taactctggc ttcacgtgac cgcgcaacgc atcgaaagtc       480
     ccaaccatta aacgaggtca atgagacaat gaccccagct catgccccag tttttcttgc       540
     gcaatattac aacaaatttg gcgaggccgg gtgaaataca tagtctgtac tttcagtcac       600
     tgataatgcg taaccgtccc aaactccata gactccaaat cacattttaa tttttaaagt       660
     tacttacaaa ttatgtacaa ctttgcaaga taactacgaa aagcgtgatt atggtattta       720
     ttgaagaatc atattcaaga atgaatcaat aaacccaggc aaaatgttga gtttcaataa       780
     agttttgaag tttatgtttg tgtttgtcta tgatttatac ttaacttgag ttacgttcat       840
     attttgtaaa cagctacgtt actggtgtgt taatctgtca tgtggaatta tctagtgact       900
     agaaataacc cggatcagta attttattga aattgggatc taggggaagc ctttcttatt       960
     ttcatcattg atcaatttct aagtcctaat tactaaataa agggtgcatg gacggataat      1020
     acaccgccga actgttttta attcattaac ttgtcgacag acaagtcgca gacgacagta      1080
     tctcttcata gtttatttga gtgccgttgt tcttgtgttt tcactggcgg ccttttttta      1140
     gaagttcgtc ggaaaataaa cttagagaag aatacgtttc cgattagaat ctataaatca      1200
     gccgagtgtc gatttttgtt taaaaaactg ccgatgatta ttttggcggt tgtttttttc      1260
     ggacgtcatt tcgtaatttt cgttcaagag tatatatcaa ttttaatgta ttaaacaaaa      1320
     tgattaatga tgtaactgtt aactgaagtt aggagtttga gataacccag ggtatttcgc      1380
     cagctgattt tggaaggggg taatcctttt ttgtttaata atattgtaag tcaagtttac      1440
     tcctgaaaca attctttcat ttaattccga ttgtcaataa agaatctaac attcagccga      1500
     gtgtcgattt ttgtttaaaa aaactgccga ttgttttggc ggttgtttgt tttggacgtc      1560
     atttcgtcca agcgtacata ttaatttatt aaacataatg attaatgatg tagcttttaa      1620
     ctgaaattag gagtttgaga taacccagga aatttcgcca gctgattttg gaagagggta      1680
     atcctttttt gtttaataat attgttagtc aagtttactc ctgaaacaat tctttcattt      1740
     aattccgatt gtcaataaag aatctaacat tcagccgagt gtcgagtttt gttttaaaaa      1800
     atgccgatga ttgttttggc attttttttt tggacgtcat atcgtccaag cgtatatatt      1860
     aatttattaa acatattgat taatgatgta gcttttaact ggaattagga gtttgagata      1920
     acccagaaaa tttcgccggc tgattttcga agggggtaat ccttttttgt aaaataaata      1980
     ttgtttataa gtcaagttta ctcctgaaac tacctatcac tatcatcctt tcgtttgcgt      2040
     tcgtccacga cggttataat tatatctttc tcgccttcga attcgaatat tacgtcaaga      2100
     tgccaagcaa agtttggcgc gtgtttacga aagtttcgtc gactaccgtg aaatgcacta      2160
     tttgcgatcg tgtgctgggc tataagggag ggtcgaccgg agctatgtta aatcacatga      2220
     agactcatcc caactccatt gaagatgaca gacagccgag actttcatca ttcaaccgac      2280
     aatgtaaccc ggatagagca cagcgaattt ctaatctcat cgccgatatg atcgcaaagg      2340
     atggactgcc catcaacttt gttgagggcg aggggtttcg agcactcatg cacgacgtcg      2400
     aaccagactt cacaatccct agccgacaaa ctgtgatgag aattcttgaa ctaaagtttc      2460
     tagagcagaa gactaaaatt aagcactgga tgagcggatg tgaacacatc gcaataacga      2520
     ccgactgctg gacaagcttg ggccaggaag gatttatgac cgtgaccgca cacggcatcg      2580
     ataaggaatg gatcaagaga agtttcgttc tcaacaccag ccctgtggcg agcctcgacg      2640
     acaacgatga ggacaacgat cccccactcc cacagcggca tacttcccaa gcgctaaagt      2700
     cgcaactcag agaagttgct caaacctggg agataaacaa taaagtgtgt ggggttgtgc      2760
     acgacaacgc agccaacgtc agggtgattg gcgaggccgt gggagcaccg gacgttcctt      2820
     gcacagctca taccctccaa ctctgtgtga atgctggctt gaactcgaac ggccagttac      2880
     aaagagtcat tggagccgtg agtcgcttgg tagggcactt caaacactct gtggtggcat      2940
     cacaagctct aactgccaag caagaccagc ataacttgcc aaaacatcgc ctaatccaat      3000
     ctgtcaaaac gagatggaat tcggtgtacg atatgtttgc tcgagttacg gaacagcgct      3060
     gggccatcac aagcgttctg agcgatgaac gtttgacgct tcatcgtgat gcgacaaccc      3120
     tgcaactcaa ggacgagcac tggtctatcg tcgacaacat ggggaaaaca ctggaacctt      3180
     ttttggtaag tacaattgaa attattttca ttaaatatat tttaattatc ttacaatttt      3240
     ctattcaatt tcacaaataa gaaataatta gaatgcatca atcatatgca atgaaatttc      3300
     aattaaccat tctactgtaa ataaccattt ttcattaacg attttatcgt attttttaat      3360
     atgttaatta atataatata cataaatata tttgctcgta agtatgaatt tatgaacaat      3420
     ttgcaaagat gcaaacttga aaaaagaaaa actgacatta ttgcattgga tttgtaagtt      3480
     gtaagtttgt aactagtggc taggtctagc tgtaaccatt gcattgtctt ttttcactta      3540
     ataggtagca acaaaggtac tttccagcga agaacatcca acggcatcaa cagtccttcc      3600
     aatgatcacg ggactacttg acaacttcct catcgtggag gaaaccgata gcggaatagt      3660
     ccgacagttc aaggaaacaa catcagagca attgaagaga aggtaccgat tatattaaac      3720
     aaaacgcaaa tgcttcattt aattaaagaa agagaaaaaa gagacactat ctcattggaa      3780
     aaattaacaa cttattcgat ttttaatatc aattgtaaaa aaaaaaaaaa aaaaaacttg      3840
     tataaaatgt tgctatcgca aataaaatga cagcactaga cttttaaaaa aagcaacaac      3900
     aacatatata atgctgatgc tcaaatatta catttctaat tcataaattt ttcgtttcat      3960
     ccttaggttc catatcaaat ccgctcgaga gcgagacgag gatgtcgaga tagaagatgt      4020
     atcggctttg catcttgctt cagcattgga tccccgctac tcaaacctca cttatctacc      4080
     acgcgccatg agaaacgtcg taaagaacaa gctgaatgag cttatcccag aaagagatga      4140
     cgaagaacag aacgctgatg tcgagcaacc atcaacgtcg cttgatttcc ttattacggg      4200
     aaggaggttt acagctccgc aacaacagcg tgacagtgtg gaagaaattc atacattttt      4260
     tgatctgccc gtggtcccct ctactgctga cgcagttgcg tggtggaaag cgaacgaagc      4320
     gtcatttcct ctcctcggca atgtcgcaaa gaggtttcta acaataccgg caacatctgt      4380
     cccatccgag agggtgttct ccactgcggg caatatagtc accaagaaac ggagctgcct      4440
     tttggccgag aatgtgaata tgctgatatt tctcaaacat aacgcaaagt ctatccctct      4500
     gatctgagaa aggacttaaa ttgatgatgt tatttcataa actacatgct ctttattact      4560
     cttgtagtat acttctcaac gataaagatg acatcacttt gttattgtta atttgttaca      4620
     gacttattcc tcacttaccc ttttatcccc gttcgtacga tatgattcta gtttctgtta      4680
     taaataatta aaatatgtta ttttatgact tatctttcaa agtctgaata tacgctattc      4740
     atctaaaatg tttgaaattt gttgagtttt ttcatggtga tgtcattttt aggcaatgag      4800
     atatcaccga atgaacaagt taaatttttg aagtacaaac taaaatcgat tattatcaaa      4860
     ataaactatt agaatcaagg tcacaagttt tcacaacgct agtttattaa gccgacacaa      4920
     acttaactgc tgagcgcaga tctctaaatg ttctttcgta ataattatta tgctcggtat      4980
     ttgttatatt tcattttctt gccacatttg caaaaagggg gtagacaact aggcatgtta      5040
     taatttataa tccttgccta acacgtagta ttgggataat tgtatcaaaa cataatgcgc      5100
     ctgtaaatag cctgtactgt tgtgtgtcga actgtcgatt tgttttattt ctttgtcaaa      5160
     gataaatagc ccaaactctg aagtttggca ttttaatctt tgaaatgtgc gtgcttgact      5220
     agtcttgtct ccctgtcagt atatttcttg ttaccgtaat tcaatgaata ggagacgatt      5280
     gccatattta aaattgttaa ctttagagag ttagacacaa ggcttatgaa aatgatgatc      5340
     catgtactga cctccgaagt ccgaatttca aagtcaaaaa aagttatagc atcagcgagg      5400
     ggtcggggta tggtaaatgt gttttcttcg aatcacatgt caacatctcg ctgttttata      5460
     tttggaagga aaacatagga acttaggaag cacgtgaatg cccaactcat ttacatatgc      5520
     cttgtgtcag ctgctgaagt tgaattaaca agcagtgata tgattggcta gtcgatgtat      5580
     ggataatgtc cgcgcacaca atgcatggag ttttgcgagg gagatcgaga gagagagaga      5640
     gagatagtgc agtgatgatt agagcatgat tggtcatgaa taatgataag ttggtgctga      5700
     ttgtgagcga tgattggtcg cttacatgag acacgatgca gacagcgcgg gcatggtgcg      5760
     agagagagag agagagatgt gtgcatgagg gtaccgggtc ggtgacgggt cataaaaata      5820
     aacatgattc agtaatattc tttgaaaccg cgcgcggtgt ctagatattt acaaactgaa      5880
     caagaaataa caaccaagtg ataagcagta gtattcagct tagatttcag ctggatattt      5940
     aaaaaatgaa caagaaatga caaccaagtg ataagcagta gtatctggct tagatttcag      6000
     ctggatattt acaaactgaa caagaaatga caaccaagtg ataagtagta gaattcagct      6060
     gtcaggggcg gtttaatatt tacaaacaga gcagcaataa catcgcaccg caccgatgag      6120
     tgattgagtg caatgaatga cctagaaact tgatacctgg cgtgtgctgg gtgcgtgata      6180
     tactactatt cttttttaat cagcggcgac cctggcaaaa gtgaataatt ttcgtttaac      6240
     cgaaaaccgt ccggttttga ctggcggtta aacggaattg gagatatccg tgatgttaca      6300
     gcacta                                                                 6306
//
ID   SP2109AA    repbase;    DNA;    SPU; 273 BP.
XX
AC   K01645;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus 2109A repeat element.
XX
KW   Repetitive sequence; 2109A repetitive sequence; SP2109AA.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-273
RA   Posakony W.J., Flytzanis N.C., Britten J.R., Davidson H.E.;
RT   "Interspersed sequence organization and developmental
RT   representation of cloned poly(A) RNAs from sea urchin eggs.";
RL   J. Mol. Biol 167, 361-389 (1983).
XX
DR   GenBank; K01645; Positions       1     273.
XX
SQ   Sequence 273 BP; 74 A; 51 C; 54 G; 94 T; 0 other;
     ggatcaggat ttgtaactct cctacatcag ctctatgttg ccaacctctc gatgaagcta        60
     ttgctgcaaa ctctttgagt gtagcattcc aactttgaaa caggggggca tttcacaaaa       120
     cttatcatca gtgacaaatg acagtttttt ttataagcta ccggtactga aatccttgct       180
     tatgactggt tatcagcaga tttgtttctg atttttgtca tttttcattg aaaaaaaggc       240
     tttgtgaaac gggtccttgg tttactaaag gag                                    273
//
ID   CSP2090     repbase;    DNA;    SPU; 167 BP.
XX
AC   J01187;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2090.
XX
KW   Repetitive sequence; CSP2090.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-167
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01187; Positions       1     167.
XX
SQ   Sequence 167 BP; 44 A; 36 C; 36 G; 51 T; 0 other;
     aattcgggat caaaaccgtg tcgatgtgct atattagtgc ccttttaggg gttcctgact        60
     gacctaaagg tttataatta tcattgaagc atgagctaaa tccaggattt tgtttcagaa       120
     tctgaggcct gtcttcatca gctcgagatt gccaaataac ccgcccg                     167
//
ID   SPEC1       repbase;    DNA;    SPU; 472 BP.
XX
AC   J01207;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus spec1 repetitive sequence.
XX
KW   Repetitive sequence; SPEC1.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-472
RA   Carpenter D.C., Bruskin M.A., Spain M.L., Eldon D.E., Klein H.W.;
RT   "the 3' untranslated regions of two related mrnas contain an
RT   element highly repeated in the sea urchin genome.";
RL   Nucleic Acids Res 10, 7829-7842 (1982).
XX
DR   GenBank; J01207; Positions       1     472.
XX
SQ   Sequence 472 BP; 168 A; 78 C; 79 G; 147 T; 0 other;
     tataaagcac atgtatagat gcaattgtta aaacaatgat tacataacac ttgcaagaat        60
     acattcaaag ataaaattac taagatatta tgacaaaaac cctctcaatc tggacctcta       120
     ggaagatcag agccattcaa taatttaacg gtccttaata gagctattca tccgtattta       180
     ttttaaataa ttatatttgt ttatgttcat gggcatgtaa tatgtttgtt taaacggaaa       240
     atgaaaccaa accaatctag agcccggcac taacgtcctt tggcaaggca ttaattcaca       300
     tttaccactc tccacccagg tgtataaatg ggtacctagc aattgatggg gtaatgataa       360
     atgcagggcc cgcaggacag cagtattgat actgatgttc gctagcctga gtttaaaaaa       420
     atattattat cattattaat agtagtagta gtagaagtac tagtatttta tt               472
//
ID   CSP2111     repbase;    DNA;    SPU; 155 BP.
XX
AC   J01195;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2111.
XX
KW   Repetitive sequence; CSP2111.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-155
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01195; Positions       1     155.
XX
SQ   Sequence 155 BP; 40 A; 45 C; 27 G; 43 T; 0 other;
     aattcggatt aacctcggct ccttgactga tcagatattt ggtgacatca agatgaccac        60
     agccccactg cactacttat agcctattgc gccctctata tagcaaacaa tgcctaatag       120
     gtgaccattg gtcacacatg gtcccctttt tcccg                                  155
//
ID   CSP2034     repbase;    DNA;    SPU; 498 BP.
XX
AC   J01186;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   S.purpuratus repetitive sequence csp2034.
XX
KW   Repetitive sequence; CSP2034.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-498
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01186; Positions       1     498.
XX
SQ   Sequence 498 BP; 116 A; 101 C; 75 G; 206 T; 0 other;
     aattccattt cccgtttacg tgtaatcgcc atgggaaatg tgttggtata tcggtaacgc        60
     acttgacttc caagctcgag atacctggtt tgagtccggg tgtctccaac aatttttgtc       120
     ttcatttctt ttttcttttt gacctttcac tgtaccatct cctttgatta ttaaaacatt       180
     attcgcaaat aatgtaataa acaaccgtat ttaccttatt attacccttt tttccactta       240
     atccattatt tagtgcgtgt agtccctatg ggggatgact tttttttcaa atctagattc       300
     tacattcctg tcttttgcga gcaatatcgc cgttatttct gcttggattt agttgatttt       360
     tgagtatgtt gtagctgaga ctatatgcta tctaaatcat tcctcatttt ttcaattaga       420
     tatcaggatc acgcttatga tcatgatcat tatcatctca tttctcactg agtattattt       480
     atatgtctgt ctctcccg                                                     498
//
ID   SURF1       repbase;    DNA;    SPU; 333 BP.
XX
AC   X07085;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus retroposon-like DNA sequence SURF 1-1.
XX
KW   Repetitive element; Interspersed repeat; retroposon; SURF1.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-333
RA   Nisson P., Hickey J.R., Boshar F.M., Crain R.W.;
RT   "Identification of a repeated sequence in the genome of the sea
RT   urchin which is transcribed by RNA polymerase III and contains
RT   the features of a retroposon.";
RL   Nucleic Acids Res 16, 1431-1452 (1988).
XX
DR   GenBank; X07085; Positions     535     867.
XX
SQ   Sequence 333 BP; 86 A; 64 C; 70 G; 113 T; 0 other;
     cagatataag tattatatct cgcaattcgc atttcattcg catatatgga tatgggtttc        60
     gtatagtctc cgggctgtgg ttcgcggttc gagtccctcc gcgacactaa tgtcctttgg       120
     cacgacaaca aattaaatgt gttactctcc acccaggtgt attaaattac ctggtaggaa       180
     ttgtattcct tgaatacctt tacatcttag ggtagctggg ctaaagcagg gtaataatac       240
     tactttgtat aggcgccctt gggcatattc tgggatggat acgtgcgcaa tataaatgta       300
     gctagtattg ttattattat tatcattatt acc                                    333
//
ID   CSP2112     repbase;    DNA;    SPU; 257 BP.
XX
AC   J01196;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2112.
XX
KW   Repetitive sequence; CSP2112.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-257
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01196; Positions       1     257.
XX
SQ   Sequence 257 BP; 70 A; 54 C; 61 G; 72 T; 0 other;
     aattctaaat cctgaaatgt catgcgctct cttatctcac cactggtcaa tagttgaaga        60
     ttagcgcata acttttcggc ggcttggagc atggggtcaa aggagagcgg cttgattcca       120
     gtccttctct atcacgtccc ataaggaccg gtattcataa tacgagaaga gggttggtat       180
     tcataatacg agaagagggt cgctgttcat aatgcaatat cggggtcgtg tcaaattttc       240
     aaatttcgag accaccg                                                      257
//
ID   CSP2108     repbase;    DNA;    SPU; 312 BP.
XX
AC   J01193;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence.
XX
KW   Repetitive sequence; CSP2108.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-312
RA   Scheller H.R., Anderson M.D., Posakony W.J., McAllister B.L.,
RA   Britten J.R., Davidson H.E.;
RT   "Repetitive sequences of the sea urchin genome: II. Subfamily
RT   structure and evolutionary conservation.";
RL   J. Mol. Biol 149, 15-39 (1981).
XX
DR   GenBank; J01193; Positions       1     312.
XX
SQ   Sequence 312 BP; 79 A; 76 C; 51 G; 106 T; 0 other;
     ctgacttggt cgacagatct ggaatgagct tcccttggta attgatcata cccaagaacc        60
     gttggacatc tttccgacat ttcggtctct caatgttcaa gatagcagac actttctttg       120
     gatcacgttg aactccttga tcactgatca agtcaccaat aaatgtgagc ttcttgacat       180
     tgaactcgca tttgtctttg ttcaacttga gatacatttt tttcacaatg ctgagaacct       240
     ctctcaacct gttatcatgc tcctgttagg tagttcccta tacaatcaca tcatccatca       300
     ttgtgttaac tc                                                           312
//
ID   RTE1X_SP    repbase;    DNA;    SPU; 3561 BP.
XX
AC   048B05;
XX
DT   14-JUN-2005 (Rel. 10.06, Created)
DT   14-JUN-2005 (Rel. 10.06, Last updated, Version 1)
XX
DE   RTE-like non-ltr retrotransposon from sea urchin.
XX
KW   RTE; Non-LTR Retrotransposon; Interspersed Repeat; RTE1X_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-3561
RA   Jurka J.;
RT   "RTE1X: RTE-like non-ltr retrotransposon from sea urchin.";
RL   Repbase Reports 5(6), 158-158 (2005).
XX
DR   BCM-HGSC; 048B05; Positions    1360    4920.
XX
CC   The sequence is relatively new, with long ORF homologous
CC   to RTE elements. The 5'-end has not been determined.
XX
FH   Key           Location/Qualifiers
FT   CDS           623..3298
FT                 /product="RTE1X_SP_1p"
FT                 /translation="KMCPIHSLFLLTWLERRVQWVHHYSGKKDQMKIGTWN
FT                 VRTLMDTQNSNRPERRTAFVARELRQHDIDIAALQETRLAGDGQLTETAGG
FT                 YTFFWKGKSMGEPRIHGVGFAIKNEIMRTMDQVPLGINERLMTLQMNLSKG
FT                 RKATLISAYAPTLMAEAEEKESSYSSLDTLLTQIPRSHKLLLLGDFNARVG
FT                 KDSTIWNGVLGKEGIGNVNDNGHRLLTKCAEHRLTITNTLFRQKNRQKTSW
FT                 RHPRSGHWHMIDYIIVRQDDKKDVNITRAITASDACWTDHRLIRSVMAISL
FT                 QPKHRKTKKNRAGYNLRSLEQPSVQEAFKVSMEKSIQERNPSINDDVEKYW
FT                 NDLKDAIVKSCKETLGKPERYHEDWFDENDKEITKLISDKRSAFTTWQNDI
FT                 RNANKRAAYHSLRSLIQCRVRELKNQWWLKKAEELQKLADENKSRDFFTAT
FT                 RKVYGPTVNGVRPVLGKDGSLLKDKDKIRERWKEHFSDLLNQPSSVETTII
FT                 DNFPQSTTLDNLSDAPTIDEVTSAVKAMKNGKAAGLDGIPAEVYKLAGSEL
FT                 HRKLHNLYKLIWEQETVPSELRDALIVTIFKKGDKSSCDNYRGISLLSVAG
FT                 KILARILSQRLSIVAEEVLPESQCGFRPGRGTIDMIFSIRQIQEKCREHHQ
FT                 DLYMAFIDLTKAFDSVDRQTLWKILTHVGCPEKFVKIIRSLYEDMNASVLV
FT                 AGEASESFAVQTGVKQGCVIAPSLFSLFVSSVLQLVNQRQPPGINLRYRID
FT                 GQLFNLRRLKAISRTTDVTVNELQYADDNAIVASSEEDLQAAMDAFSYAYS
FT                 VFGLKLNTRKTQILYQPKPGITHEQQCPPCIKVDGQPLTNVERFTYLGSCL
FT                 SSKVDIYDEIQQRLSASSSAFGRYSHSFTQIYANLTLTL"
XX
SQ   Sequence 3561 BP; 1127 A; 799 C; 777 G; 858 T; 0 other;
     agcacactca ttccataccc tcttaccatc acacaatcat gtcacacaat gttagtcagg        60
     tcaggcattt gtctgctact ggtaacatgt agtccagtac aacctgtttc atggtcgagt       120
     cgtcggcgac taaactgaca cacccacctc aggttttttt cttttttacc aaggtgagga       180
     gggtgcgtga acaccccgca ggattaaaaa caagacctgt caaagggcgg aggagtcctt       240
     atacgggacc aacggccatt cactgcaact gttctacatc ttccgatcgt ctagattttc       300
     ttgccattgg actcaggtgt ggtacagcca agtatgtgga tttcaggtgt gcaactgaga       360
     cccactttaa aaaccacgca cagcttctgc ttgcagcaca accaacccta ccaaagccct       420
     atggcgattg gagcgtgatg acgaggacag gatcgtgaaa tctgggagcc cttagtcact       480
     aaccagcaca taggcggtga aggttaaatc agtcgctcgg ctcttggact agggacagga       540
     gagcagttcg gtagttgcct tcatgactga gcagccctat ttaggatcca ctctgctcac       600
     ccatatcttg ggaaggggct agaaaatgtg ccctatacat agtctgttcc tactaacctg       660
     gctggaacgc cgcgtccagt gggttcacca ttacagcggt aagaaagatc aaatgaaaat       720
     tggtacatgg aatgtacgaa cacttatgga cacacaaaac agcaaccgtc ctgaaaggcg       780
     tactgccttt gtggcgcgtg agctgagaca acatgacatt gatattgctg ccctacaaga       840
     gacaagatta gccggagatg gacaattaac agagacagca ggtgggtaca ctttcttttg       900
     gaaaggaaag agtatgggag aacccagaat ccatggtgtt gggtttgcta tcaagaatga       960
     gatcatgaga accatggatc aagtgccact aggcataaat gaaagactaa tgactcttca      1020
     aatgaatctc agcaaaggca ggaaagccac cctaatatct gcttatgctc ctacgctgat      1080
     ggctgaagcc gaagaaaagg agtcttccta ctcaagcctt gatactcttc tcactcagat      1140
     cccacgcagt cacaaactcc tgctacttgg tgacttcaat gccagagtgg gaaaggatag      1200
     cacaatttgg aacggtgtgc ttggtaaaga aggtattggt aatgtcaatg acaatggcca      1260
     tcgactactt accaaatgtg ctgagcacag actaaccatc acaaatacac tctttcggca      1320
     gaagaataga caaaaaactt cttggcgtca ccctcgatca ggccattggc atatgattga      1380
     ctacattatc gtcagacagg atgacaagaa agatgtgaac atcacaagag caataactgc      1440
     atctgatgct tgttggaccg atcacagact gataagatct gtaatggcaa tctctttaca      1500
     acccaagcat cggaagacaa agaaaaacag agcaggatat aatctaaggt cacttgaaca      1560
     acccagtgtg caagaagcct tcaaagtgag catggagaaa tccattcaag agaggaaccc      1620
     tagtatcaat gatgatgtgg agaaatattg gaatgaccta aaggatgcaa ttgtaaagtc      1680
     ttgcaaggaa actttaggaa agccagaaag gtatcatgaa gattggtttg atgagaatga      1740
     taaggaaatt actaaactca tatcagacaa acgatcggcc ttcactacct ggcaaaatga      1800
     catacgtaat gccaataaga gagcagcata tcattctcta agatccttga tccaatgtag      1860
     agtgagagaa ttaaaaaatc agtggtggct gaagaaagct gaagaacttc aaaaactcgc      1920
     tgatgaaaac aagagcagag acttcttcac tgccactagg aaggtgtacg gtccaactgt      1980
     caacggagta agacctgtat tagggaagga tggatcgctc ctcaaggaca aggataagat      2040
     tagagaacga tggaaagaac acttttctga cctcctcaat caaccttctt cagtggaaac      2100
     aacaataatc gacaattttc cccagtcaac gactctagat aatttgtcag atgcaccaac      2160
     cattgatgaa gtgaccagtg ctgtcaaagc tatgaaaaat ggtaaggcag ctggactgga      2220
     tggcatccca gctgaagtct ataaattagc tggatctgaa ctacacagaa aactacataa      2280
     tctctataaa ttgatctggg agcaggaaac cgtcccatca gaactgagag atgctctaat      2340
     agtgacaatc ttcaagaagg gagataaatc ttcatgtgac aattaccgtg gaatctctct      2400
     tctctcagtt gcagggaaaa tactagctag aatcctgtca caacgtctat caattgtcgc      2460
     cgaggaagtc ctacctgaat cgcagtgtgg ttttaggcct ggacgaggaa ccattgatat      2520
     gatattctca atccggcaga tacaggagaa atgtagagaa catcatcaag atctgtacat      2580
     ggccttcata gatctcacca aggcttttga ttcggtagat cgtcagacac tgtggaaaat      2640
     acttactcat gtcggatgtc ctgaaaaatt tgtcaaaatc attaggtcac tctacgaaga      2700
     catgaatgcc tcggtgttag ttgctggtga agcatcagag agttttgcag tacagacagg      2760
     agtaaagcag ggatgcgtta tagctccaag cctcttctca ctctttgtct cttcagtgct      2820
     gcagctcgtt aaccaacgac aaccaccagg aataaacttg agatatcgca tagatggtca      2880
     actatttaac cttcgccgac tgaaagccat atctcggacc acagatgtca cagtgaatga      2940
     actccagtat gcagatgaca atgctatagt tgcctcctct gaggaagacc ttcaagcagc      3000
     aatggatgct ttcagttatg cctactctgt atttgggctt aaactgaaca ccaggaaaac      3060
     tcagatcctg taccaaccaa agcctggaat cacacatgaa caacaatgcc caccttgcat      3120
     caaagttgat ggacagccac tgaccaatgt tgagagattc acgtaccttg gcagttgtct      3180
     ctcatcaaaa gtagatattt atgatgaaat acagcagcgg ttgagtgcat ctagctcagc      3240
     gtttgggcgt tactcacaca gctttacaca aatctatgca aacctgaccc tcacactctg      3300
     attccaccgc ttcacacata tctagtcaca tcacccattc cacactctca caccattata      3360
     cacactctga ttaatcacac cgtttacaca gatctataag ctcacccatt ccacactctc      3420
     acgcctggtt cttagtaaat agtgagtgga cgaattggca attcatggag ctattaatag      3480
     tggacgaacc gatggtaggc caaatgatag tagacgagtt ggtaattgga cgaactggca      3540
     atagacgaat tggaaataaa c                                                3561
//
ID   SU7N33      repbase;    DNA;    SPU; 195 BP.
XX
AC   X05414;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus histone H4-H2B spacer 7N33 intermediate repetitive
DE   sequence.
XX
KW   Repetitive sequence; SU7N33.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-195
RA   Yager N.L., Kaumeyer F.J., Lee I., Weinberg S.E.;
RT   "Insertion of an Intermediate Repetitive Sequence into a Sea
RT   Urchin Histone-Gene Spacer.";
RL   J. Mol. Evol 24, 346-356 (1987).
XX
DR   GenBank; X05414; Positions      20     214.
XX
SQ   Sequence 195 BP; 84 A; 29 C; 26 G; 56 T; 0 other;
     tcaagttcaa gttcaagttc gtttatttac actcatcatt aaaaatacaa gaacatatac        60
     aatcaaatac ggaataatca cacataaaat atcatacatt caataacaac aaaataacat       120
     aacataatgg gagtgaaggg atgagctaaa aaggagtatg gtccttatgt tagagttcat       180
     tccttagtat aatat                                                        195
//
ID   D88I        repbase;    DNA;    SPU; 119 BP.
XX
AC   X01062;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.drobachiensis repetitive sequence D88I.
XX
KW   Repetitive sequence; D88I.
XX
OS   Strongylocentrotus droebachiensis
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-119
RA   Johnson A.S., Davidson H.E., Britten J.R.;
RT   "Insertion of a short repetitive sequence (D88I) in a sea urchin
RT   gene: a typical interspersed repeat?.";
RL   J. Mol. Evol 20, 195-201 (1984).
XX
DR   GenBank; X01062; Positions      37     155.
XX
SQ   Sequence 119 BP; 39 A; 30 C; 21 G; 29 T; 0 other;
     tttattatat acctcactta agaaatccag ccatctgatc ggtcaaaatt gcaggccgag        60
     ggcaatggca caattgtaac ctccccgaga gcgtataaaa ccaactatgt ctctcaaag        119
//
ID   CSP2096     repbase;    DNA;    SPU; 203 BP.
XX
AC   J01188;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2096.
XX
KW   Repetitive sequence; CSP2096.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-203
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01188; Positions       1     203.
XX
SQ   Sequence 203 BP; 50 A; 43 C; 50 G; 60 T; 0 other;
     aattcgggta cgagttggat tgtaggagtg tagtgagtct ttaatgtatt gtggcgagat        60
     tccatggaga gcccgataaa caagtaacat aattttgaag tggacccttt tctggacagg       120
     tagccagtga agagagcgta atataggcgt aatagaagac attcttggcc ccccccttct       180
     ctctctctct ctctctctct ccg                                               203
//
ID   SP2109AB    repbase;    DNA;    SPU; 203 BP.
XX
AC   K01648;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus 2109A repeat element.
XX
KW   Repetitive sequence; 2109A repetitive sequence; SP2109AB.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea; Euechinoidea; Echinacea; Echinoida;
OC   Strongylocentrotidae; Strongylocentrotus.
XX
RN   [1]
RP   1-203
RA   Posakony W.J., Flytzanis N.C., Britten J.R., Davidson H.E.;
RT   "Interspersed sequence organization and developmental
RT   representation of cloned poly(A) RNAs from sea urchin eggs.";
RL   J. Mol. Biol 167, 361-389 (1983).
XX
DR   GenBank; K01648; Positions       1     203.
XX
SQ   Sequence 203 BP; 69 A; 28 C; 38 G; 68 T; 0 other;
     agcaaaagta gagtaatgtc caagctgagg ccgtgaattt ttctgcaaag catttaacac        60
     tgatttaagg cccctctggt ccttatgtat tgattaacta catgtatatt tattcatttg       120
     agtagaaaaa aaactgtaaa ataacatgca taagtgatgg acgtctgaat atttaaacat       180
     tttgtaaata gtgctagttt gtg                                               203
//
ID   SPRP1       repbase;    DNA;    SPU; 190 BP.
XX
AC   J01194;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence (clone lambda-2109B-18).
XX
KW   Repetitive sequence; SPRP1.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-190
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01194; Positions       1     190.
XX
SQ   Sequence 190 BP; 44 A; 40 C; 39 G; 67 T; 0 other;
     tcgagtgtat aaactgtgtt gttatcagtg gcgtcgatcg ctcgacgttt cattaaatta        60
     ttagagaaag aagacgattc gttgtactgt tttcgactcc taatccttgt ctgaataaag       120
     tttcccccct cccgcgcgaa acgcggaagc tttggcgttt catttgatta taactcttaa       180
     tccttgtttg                                                              190
//
