ID   BLOODI      repbase; DNA   ; DRO   ; 6613 BP.
XX
AC   .
XX
DT   19-NOV-1998 (Rel. 3.2, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Drosophila LTR retrotransposon BLOOD, an internal portion- a
DE   consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; LTRBLD_DM; BLOODI;
KW   protease; BLOOD.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-681
RA   Wilanowski M.T., Gibson B.J., Symonds E.J.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila
RT   melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 92, 12065-12069 (1995).
XX
RN   [2]
RP   1-6613
RA   Kapitonov V.V., Jurka J.;
RT   "BLOODI.";
RL   Direct Submission to Repbase Update (06-NOV-1998).
XX
CC   [2] (Consensus)
XX
CC   LTR of BLOOD retrotransposon is listed in REPBASE as LTRBLD_DM.
CC   All copies of BLOOD were found in chromosome 2; they have 5 bp
CC   long target site duplications (all targets are different).
CC   Some of the copies are identical, including LTRs. BLOOD is
CC   presumably an active LTR-retrotransposon. BLOOD is related to
CC   MDG1 and DM412 retrotransposons found in Drosophila.
XX
SQ   Sequence 6613 BP; 2616 A; 1224 C; 1155 G; 1618 T; 0 other;
     tggcgaccgt gaggcaggag cctgcgatct gaggactact gaggaaatgc tgctaatatt        60
     gccgatttga tttgggaatt ctaaacagcg acaacaggtg tgagaggcag gccgcccctt       120
     acaccagtgc gggagaccta gagacgggac actgatgaaa aaaaaaagaa acaaaaatac       180
     tgagtgagta gagtgtggta atgggcaaac gcggatgtca ggaaatcaaa aataaaggta       240
     tagcacatat taagtggcta tgatatacaa ataaaacacc gcccccatgg gcaacggcac       300
     agaaattaac tgccgaatta gactttctga aagaaaacct ccagcaaaga aagccgaata       360
     ccacaactca ctcagcaaaa atagaaataa tcaatgaaga aataactgaa aattcaacat       420
     cacccaagcc gaaaagaccc gacgtctgca tgaacgactg ccctcgacca ttgtaagccg       480
     caacagcaat tagcacggca tcctgcgagg gtaggattag gataaaggat aaaggattcc       540
     accggcgcgc cgcacatgac aacagcgaat gtctaccaag cagacgttcg aacaccctgc       600
     tcctgtcgag caaagggatc tgccaagtat caaagaggta atagaggtag atccgtccgc       660
     gggaccaaag cccttgacca tacaagagta caaggcacgg actgcagcga gggagcagcc       720
     acctaaaaag aagaggggtg gccgccggat taagttgctc agcgcccgga ggctcaacat       780
     cgaactactg aagacggcaa ctaatgagga agaccggcag cgctacaaag agcgccttgc       840
     agccatcaat caacaacttc gtggtgcgaa gtaaagcggc gggctgcgtt atacgccata       900
     gcctcaaccg cccaaatatt atattaatgt tgtcgatgcg gtttccgctg caacaaaatt       960
     actaacttat cagggaccca tttcataact aacacattat actcagtcct aaacttaaaa      1020
     taagtaataa tattgtaaaa ttgcaaattg caaccgatgt aaactgagta taatgaattc      1080
     atctatcaag taaaaatatg tttaacaaca gtttagacct attaaaattt cgagctatat      1140
     ttatatctga tcgagataac aataattgac caattctcaa agttaaaatt ctatttgtac      1200
     ttttgatata caaataaaga ctaattttcc ccatatcaaa atgggacata agtcgtggat      1260
     acaaccccac agttaaattc aatgtactta ctatttttga ttttagttat cctatcagcc      1320
     ttttaacctg gccttaaaac tttatcagtt tcacaaaaga tcgttgaaaa gacttacatg      1380
     agtcgagcca atgatttaga caaaatctaa tagaaactac accaaaaagg tacaagtgcg      1440
     attacatcgc taaaaggtac atacatggaa tggctaaact taaccatatc cataaacaat      1500
     attagagatg cttttgataa atcctataaa tgtattaata aaaccgcgct gatcaaaact      1560
     cagacgctta tttttcacat aaaggtattg ataacacaat acaacacatt acaaaaccta      1620
     atagtaacaa acaaaagcaa actcactgaa gaacataaag tccaatgctt caaagttctc      1680
     agttcatttg gtaaaagact acataatacc agcgttagac acagtattat aatagaagtc      1740
     ccaacagaac taaccaaaat agcagaattc gacgaaagcc agttaagaga cttggacgag      1800
     tcgcagccgt tagaagattt agatatcgaa agcgatatcg aatcaataga agaattaaaa      1860
     tttaataccg tacaaccaaa tacaagaaac atggccaacg cattagaagc tcagagagca      1920
     tacgttaaac aggtatctgc cacagtacct gaattcgatg gtaagaaact ccatttaaac      1980
     aggtttgtga cagcacttaa gttgacggat ctaactaaag gagatcaaga aactttagca      2040
     gtagaggtca taaagaccaa aattattggc ccattaaact ataaagtaga acatgcgaca      2100
     acgatacagg caataattac catattgcag gcaaacgtaa aaggcgaatc gcctgacgtt      2160
     ataaaggcca aattaataaa tgcccaacaa agaggcaaga ccgcgtctca gtatgttaca      2220
     gaaatagaca gtatgcgtaa gcagctcgag gcagcttaca tagacggcgg attagacgcc      2280
     gataatgctg acaaattcgc gactaaagag tcgatatcag caatgaccaa aaactgtgcc      2340
     aacgaggcac ttaaaatgat cttaactgca ggtacattta gtacattcaa cgacgcaatg      2400
     gaaaaatacc tacattgcag tacagaaata accggcaatt caaatacagt cttattctat      2460
     aatgggaata atagacgtgg taattataat gcctactatc gtggtagagg cagaaataat      2520
     tataaccata attataacca gaattataac caaggttata ataataacaa cagaggtcgc      2580
     ggaggctacc gcggccacgg taataacaga gacggaggta accgaagggg taaccaaagt      2640
     cagaataata ataacaaccg aaatgtgcgt aacgtacaat cggaaaacag ccagaccccc      2700
     ttaagcgatc aacagtaaaa gtgtttaaag taaacctaaa tctgagtatt ttcattaaga      2760
     caaaaaacca tgaaacaaac acagttctta cattactaat agacacaggt gcagaaattt      2820
     cattgctaaa agccaaagca aaggaatata ataatataaa tttcagtaat atatcaaata      2880
     ttacaggtat tgggcaagga accatacagt ctataggtac agtagatctt gacatacgca      2940
     ttcaggatgt tctagtgcca catgaatttc atgtagtacc tgagaatttt ccgataccat      3000
     gcgatggcat aatcggaata gattttatca agaaatacaa ttgcgtatta gagtttcaaa      3060
     ataacaaaga ctggttcaca ataagaccca ataacttcag tagacagatt agtgtaccaa      3120
     ttacacataa cttagactcc aacacactct tattgccagc tagatgcgaa gtaatcagac      3180
     aagtcaaatt actcactaac gaaaaaacgg tggtagtacc aaatcaggag ctgcaaccag      3240
     gtataatagt agcaagcacc attgccgata gcaaaaacgc attgattcgc attataaata      3300
     caaataataa agacgccata atagatagcg cgaagatcaa atgcgaatca atgaaagact      3360
     atgacatttt tacaacacca gtagaaaagg aaaatagaac tgaagaaatt ttaaaacaat      3420
     taagattccc taaacaattc aataatgaac taactaagtt atgcaccgag tttagcgata      3480
     tttttggtct agaaacagaa ccaatatcgg ctaacaattt ctacaaacaa aaactcagat      3540
     taggggaaaa aacaccggtc tatataaaaa actatcgcat ggcagatagc caaaaaccag      3600
     aaatcgccag acaggtaaaa aaattaatag atgatggaat agttgaacca tcaatgtctg      3660
     aatataatag tccattactt ttggttccaa agaaaccact tccgaattcc acggaaaaaa      3720
     gatggcgatt agcagttgac tatcgtcaaa taaataagaa actattatca gacaaatttc      3780
     cacttccaag aatagaagat attcttgatc aattaggaag agcaaagtat ttttcatgtc      3840
     tcgacctaat gtctggattc caccagatag aactagaaaa aaggtataga gatataacgt      3900
     cattttcaac agccaatggc tcatatcgct tcacgcgatt accatacgga ctgaaagtag      3960
     caccaaactc cttccaacgt atgatgacac ttgcattttc tggtcttgaa ccatcgcaag      4020
     catttctata tatggatgac ttagtagtaa taggttgttc agaaaaacat atgctcaaaa      4080
     atttgactaa cgtattcgag ctatgtagac gacataattt gaaactacat ccagggaaat      4140
     gttctttctt tatgaaagaa gtaacatatt tgggtcacaa atgtaccgat aaaggtatac      4200
     tcccagatga caccaaatat gaagttatag aaaaatatcc tataccaaca gatgccgaca      4260
     gtgctaggcg tttcgtagcc ttctgtaatt attacagacg tttcattaaa aatttttctg      4320
     atcattcacg ccacttaacg aggctttgta aaaagaatgt tcaattcgaa tggacagcag      4380
     aatgcaatga tgcattcgaa taccttaaaa cagaattaat gaaaccaaca ttactacagt      4440
     acccagattt cggtaaagaa ttttgcataa caaccgatgc tagtaaacag gcatgcggag      4500
     cggtacttac acaagatcac aatggtcaac aacttccagt ggcatacgct tcaagaatgt      4560
     tcactcaagg tgaaagtaat aagtccacta cagaacaaga attaacggcc attcattggg      4620
     ccataaatca ttttcgacca tacatatatg gcaagcattt catggtaaaa agcgatcata      4680
     gaccattgtc atacctattc tctatgaaaa atccaagttc aaaactcact cgtatgaggc      4740
     tggatttaga agagtatgac tttactgtag aatatcttaa ggggaaagat aaccatattg      4800
     cggacgcctt gtctcgcata acaataaaag atctgaaaac aatcaacaga gaaatattaa      4860
     aagttaccac cagatcaaaa gctaaacagg aaaattcctg taaggacgaa gcaatagtca      4920
     aaatacaaga ggaaaaagag caaacaatag aaaagcccaa agtctatgaa gttgtcaata      4980
     ataatgacac aaagaaatat gttttaatca aaatagataa acacaagtgt ttattaaaac      5040
     gaggaaaaac aattgtttca cgctttgatg ttgatgactt gtattctaat gaaacatttg      5100
     atctaaatca attctttcaa aggcttattt caaaagccgg aatgcataaa ataacaaaaa      5160
     tgcgaatatc accaagcgaa cagatgttcc aatttgtatc actaaatgaa tttaaaataa      5220
     agggcaaccg agtactcgaa aaagtagaac tagctattct acaaaaggtg ataattatag      5280
     acaaaaatga cgaagctcag attaaagaaa ttttgacaaa attccatgat gatcctatag      5340
     aaggaggcca cactggtatt tcgcgaaccc agtcaaaaat caaaagattt tattattggc      5400
     cccagatgac caagacaatc tcaaagtatg taaagacttg tttgaaatgt caacaagcca      5460
     aaattacaac acatacgaaa actccattaa cattgatgcc aacgccagca acagcatttg      5520
     atactgtttt aattgatacc attggtccac taccgaaatc ggaagacgga aatgagtatg      5580
     cagttacaat catatgcgat ctaaccaagt ttttagtaac tattccaaca ccaaataaaa      5640
     gtgctaaaac agttgcaaag gctatatttg aattatttgt actgaagtac ggtccaatga      5700
     agacgttcat tacagatcaa ggtacggaat acaaaaattc acttatgaat gaattatgca      5760
     aatatatgca tatagaaaat ctaacatcta gcgctcacca tcatcaaact ttaggaacaa      5820
     tagaaagaag ccaccgaact tttaatgaat atatacgttc atacatatcg gttaacaaaa      5880
     gtgattggga catttggtta ccatatttca cttattgctt caatacaaca ccctcaatag      5940
     tccatgacta ttgcccatac gaactagtat ttggcagact acccagacaa ttcaaagatt      6000
     tcagtaagat aaacaaaata gacccaatat acaacttaga cgactactct aaagagctta      6060
     aatgcagact agaattgtcg tacaacagag caagaagaat gttagaaaaa gcaaaagcgg      6120
     atagaaaatt aagatatgat aggaatacaa ataatttcga attaaaaata ggagataaag      6180
     tattacttag aaaagaaaca ggtcataagt tagataaaag atatgaaggt ccttatgacg      6240
     tagtagatat aggaataaat gacaatataa ccattaaaac aggaagtaag aaacaacaaa      6300
     tagtacataa agataggcta aaaaagcaca aatagaatga aaaaaaaaaa gggcaatcaa      6360
     tgccaaacct ttcataataa aacttaaata acggcctgat cagccaaaac aatataacaa      6420
     agacatagat ataatcgaat ttttattaat tcaaaataca tacatatttt ttctttattc      6480
     atttaaaaat tctatatcat aaataatgtt aattcattaa aaataatatt taagtaattt      6540
     ttattttata atggtaatat agttgataga aaataacttc atttctttac gttattttaa      6600
     aaaagagggg agg                                                         6613
//
ID   UBX_DM      repbase; DNA   ; DRO   ; 225 BP.
XX
AC   K01963;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Drosophila repeat, from Ultrabithorax locus (Ubx) of the Bithorax
DE   complex (BX-C).
XX
KW   Repetitive sequence; DMUBX; UBX_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-225
RA   Scott P.M., Weiner A.;
RT   "Structural relationships among genes that control development:
RT   Sequence homology between the Antennapedia, Ultrabithorax, and
RT   fushi tarazu loci of Drosophila.";
RL   Proc. Natl. Acad. Sci. U.S.A 81, 4115-4119 (1984).
XX
DR   GenBank; K01963; Positions       1     225.
XX
SQ   Sequence 225 BP; 64 A; 60 C; 65 G; 36 T; 0 other;
     aatgctttcc cattccgatc tacaggtaca aatggtctgc gaagacgcgg gcgacagaca        60
     tacacccgct accagacgct cgagctggag aaggagttcc acacgaatca ttatctgacc       120
     cgcagacgga gaatcgagat ggcgcacgcg ctatgcctga cggagcggca gatcaagatc       180
     tggttccaga accggcgaat gaagctgaag aaggagatcc aggcg                       225
//
ID   MDG3_DM     repbase; DNA   ; DRO   ; 4986 BP.
XX
AC   X95908;
XX
DT   06-FEB-1997 (Rel. 3, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Internal part of D.melanogaster MDG3 retrotransposon.
XX
KW   LTR; mobile dispersed genetic element; retrotransposon MDG3;
KW   DMMDG3; MDG3_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4986
RA   Avedisov N.S., Il'in V.I.;
RT   "Drosophila retrotransposon mdg3: general structure and
RT   functional domains of a full-scale copy.";
RL   Dokl. Akad. Nauk 344(6), 823-826 (1995).
XX
RN   [2]
RP   1-4986
RA   Dzhumgaliev B.E., Mazo M.A., Baev A.A., Gorelova V.T.,
RA   Arkhipova R.I.;
RT   "Structure of long terminal repeats of transcriptionally active
RT   and inactive copies of the mobile dispersed gene MDG3 in
RT   Drosophila melanogaster.";
RL   Genetika 22(3), 368-377 (1986).
XX
RN   [3]
RP   1-4986
RA   Ilyin V.Y., Arkhipova R.I., Gorelova V.T., Schuppe G.N.;
RT   "Detection of RNA reverse transcription intermediate forms of the
RT   mobile dispersed genes mdg1 and mdg3 in Drosophila cells.";
RL   Mol. Biol 19, 162-172 (1985).
XX
RN   [4]
RP   1-4986
RA   Avedisov S.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (16-FEB-1996)S. Avedisov,
RL   Engelhardt Institute of Molecular Biol., RAS , Department of
RL   Genome Mobility, Vavilov Str., 32, Moscow, 117984, RUSSIA.
XX
DR   GenBank; X95908; Positions     267    5252.
XX
CC   LTRs of DMMDG3 are named LTRMDG3
CC   CDS 29..4513.
XX
SQ   Sequence 4986 BP; 1898 A; 877 C; 947 G; 1264 T; 0 other;
     aatctcagaa gtgggattaa taatccaaaa tggacgataa aatcatcctg aacgactttt        60
     cgctgacaac cctaaaagat tggctacgta ttctgggcca aaatacggag ggcacaaaaa       120
     ccgaattaat cgcgaggctg caagacatcc caacggcagt tcggggcgat tgtccaccgg       180
     agcaccccca gaaaaacgct ccaccaggaa acgacatttt ttcttcactg gattttcaga       240
     attgtgaaat taacaccgat cacgtaagtg tgaatgcgat gaacagaaaa gaatcaaccg       300
     aaactggcag tgagagggag acaaacatgt tcgagctaca gcaactacgc gcagagctag       360
     cagaagcgaa ggcaatgctt aacggaacac gatcgagctt gcagttccaa gaacaacaac       420
     aaccagagca aagcaaggct acagttagtt ccgttatcca gacggcgcag tttacgcagg       480
     ctggcgccac aaaagagaac acaacatttc actcgccgca gcgatccaac gagagagcgg       540
     agagccagcg ttttccagtt gatgctctcg ctctcgccaa agagacgata accgattacg       600
     atgggaaaac ttgcgcgcgt gcctggataa cagtggtcaa aaatatcgca cgcactttca       660
     acatcgatga caaccattta cgcatcttac tcatcactaa acttaaagga aacgcgcaag       720
     tctggttaca tgcgcaccct gctcgattga tcgaaccaat tgacaatttg cttgatcaat       780
     tgtcattgac ttttggcgag caatcatcca aggctgagat ccggcgaaaa ttcgagagtc       840
     gcaagtggaa aaccgaggag aatttctgca gttattacga cgagaagatg gctctctcaa       900
     acgggataaa catcgacgac gacgaactac tggaccagat gatagagggc ataccgctac       960
     aaaatttccg tacccaagca cggattcaat gcttctctac tccatcggag atgctacgcg      1020
     cattttcgaa catccgtttg ccagctcgga gggagccacc tgtacagcca accgactaca      1080
     aagatgccat acgatgcgca aactgtaatt caagaggaca caaagctgac atctgcaaga      1140
     agcccaaacg tgaaccaggt tcgtgctacg cctgtggaca acttggacac ctggtggcac      1200
     aatgtcccac aaggaagagc gtttcatcta ataattatgt aagatggttt aaaattaatt      1260
     tttttgaaaa tgcttataag cccataattt cagaatgcct catagactct ggcagtccta      1320
     tatctatcat taaaaagtca cttattaacg agacaatgaa gttagcccta gttaatactt      1380
     gctattttgg tttaaacaac tgtattctca aaacacatgg acaaaccaca tgttatgttt      1440
     tgaaaggatc aataaaaata tattttcgtt taatcattgt ttgcgaccag tctatgaggt      1500
     ataatgttat tctcggcaga gattttttaa ctgcatgcaa tttaaattta gacccgtaca      1560
     ccttgggaat gattgcgttg agaaaaccca tggaaataaa caaaatatca atgtttactg      1620
     aaaatgatag tcctgagaaa tctttagaaa atgaaattgt tagtccaaaa tcgttagaga      1680
     atgaaattgt tagttcacaa tcgttagaaa atgaaattgt tagccccaaa tcgttagaga      1740
     atgaaattgt tagtccaaaa tcgtttaaaa atgcaactat tagtccgaaa tcgttagaaa      1800
     ataaaatcgt taatcaacag cataaagaaa ctggtccaat atcgttaaga gatgaaatag      1860
     ttaatcaaca aaagaatgtc agtaaatcaa aattatcaga agatgaaatt gttaacactt      1920
     caaaagaaat cgttagtttt aaattgccaa aagataaaaa cgtttacgaa caattaaatc      1980
     acaactttga taaggaagta ctaagaatat gtcatgtaac tgaaagtgag ttagaataca      2040
     aaataggaga aaatgttagc aataggttac aactagaatt cgataggttg tttagaaatt      2100
     tttatataaa tgcaaaaagg ccaaatgaac cgacagttag aagtgaaata caattgtgtt      2160
     tgaaaaaccc gaaaccgttt agctgttctc ctaggaggct ttcatacaca gaaaaagaca      2220
     ggttacaaaa actattagac gaatatttgg aaaacggatt tatacgacca agcgactcgg      2280
     aatatgcatc gcctattgtt ttagtgaaaa agaaaactgg agacttacgt atgtgcgtcg      2340
     actttagaaa acttaataaa atgacaatga aagacaacta tcctctacct cttatagatg      2400
     acttgttaga tagaatgaat gagaaaactg ttttcaccaa actcgatctt aaaaacggtt      2460
     ttttccacgt gcatgttaaa aaagaatcaa taaaatacac ctctttcgtt acaccattag      2520
     gccaatacga gtggctgcga atgccatttg gcctcaaaaa cgccccgtct gtgttccaaa      2580
     gatttgttaa caaaattttt gcggatatga ttagagaaaa caaagtagta gtatatatgg      2640
     acgacattct attggcaacc gaaaatataa acgaacactt agaaacgttg aaagaaattt      2700
     ttaaaagatt agttgaaaat aaacttgaat taagaataga caaatgtgag tttatgcaat      2760
     caagtataaa atatcttggg ttcataataa ataaagacgg cataatgccc aatgacaaag      2820
     gaatcgaggc aataaaaaat ttcccaatac ctaataatgt tcatacagta caaagttttt      2880
     tgggattatg ctcatatttt cgacggttta taaaagattt ttctagacta gctaaaccat      2940
     tgcatgacat tctaaaaaaa gataaaccgt tcaaatttgg tagtgaagaa atgatttgtt      3000
     ttaatatgtt aaaagataaa ttaatacagt caccggtctt agctatatac aaccataaac      3060
     acgaaacaga attgcattgt gatgcaagtt cttctggatt cggtgctgta cttatgcaaa      3120
     agaaggagga ccagaaatgg cacccagttt cattcttttc aaaacggaca acagatattg      3180
     aatcaaaata ccacagtttc gagttagaaa ctttagccat tgtttattcg ttacgtagat      3240
     ttagagttta tcttcattgg aggacattta aaatagtcac cgactgcaac tcattaattt      3300
     tgaccctaag caaaaaagag ctaaacccta ggatagccag gtgggcttta gaattccaag      3360
     gttatgattt tgaaattgtg catagggcag gtagccgcat gcaacatgtt gacgcactga      3420
     gtaggtgtac aaatattatg gtaatacaaa caaacagttt cgaagataat ctagttatat      3480
     gtcaagggaa agatacaaaa ttaaaagaaa tcaggcaatt gttagaaaac acagaaaata      3540
     aattgtatga gatgagaaat ggtatagttt acaaaaagac aaatgaaaat agattgctgt      3600
     tctacgttcc gatagaaatg gaagaacaag tgttatacaa atatcacaac gaacttggac      3660
     acgtaggaag agacaaaatg atagaagcta taatgaaaaa ctattggttt ccaaatttaa      3720
     aacagaagtg tagcacacat atcagcaact gtttaaaatg tatttcattc agtcccaaaa      3780
     caggaaaaac agaaggattt ctacacaaca tacctaaggg aaacaaacct tttgaaataa      3840
     tccatattga ccattatggt ccagtagact tggctagacc gaagaaacat attctagtga      3900
     tagtagatgc attcacaaag tttgtcagac tatacgcaac aaaaactacg aacacaaaag      3960
     aagtcataca atcgttaaat gactacttca gagcatacag taggcctaag tgtatcatat      4020
     cagatagagg agcatgtttc acgtctggcg attttgactc atttttgaaa gaatgcaatg      4080
     ttaaacacat aaaaattgca acaggatcgc cacaagccaa cggtcaagtt gaacgtataa      4140
     accgaagtct tggtccaatg attagcaagt taattgaacc tgatcaaggt ctacactggg      4200
     acttagtctt agaaaaggtc gaatataccc tgaacaatac actacaccgc agcattaaac      4260
     agtatcctag cataatgtta tttgggttac aacaaaaagg acaaattatg gatgagttaa      4320
     aagaaaaaat tgaggaaatt ggagaaacga ttgaagaaag agatttagaa agtattagaa      4380
     ataaaggcga ggcaagtcag aaaatagcac aagcatacaa taaagaatat gttgacaaaa      4440
     aacgaaaacg atcaggagtg ttcacaaaag gcactacgtc atggttaaaa attttgactc      4500
     aacaacaggc atagctaaga agttaattcc aaagcataaa ggaccctatg tcataagcaa      4560
     agttctcaaa aatgatcgct tccttctgga agatgttgat ggatttcaaa tttctcgcaa      4620
     tccttaccgg ggtgtatgga gcatacagaa tataaaacac tggcaaagaa aaattaagag      4680
     tctacaaaat agaaagtata atttgagaaa ctctgtacaa aatagaaagt ataatttgag      4740
     aaactctgta caaaatagaa agtataattt aagaaactct gtacgaaatc gaaagtataa      4800
     tttaagaagc aattgtaaaa caaagaaaac aaacaagaag aaaagaaaac caaaaaaatg      4860
     tttaagaccg ttcaaaagta tctccactaa gaagaataaa ataagaaaca ggacccttag      4920
     ctttaagaaa cgttaattgt tataaaatcc tacgatcggg agatctagtt gtcaggacgg      4980
     ccgagt                                                                 4986
//
ID   FB4_DM      repbase; DNA   ; DRO   ; 4089 BP.
XX
AC   V00246;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Transposable element FB4 (foldback element) from Drosophila.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; DMFB4; FB4_DM;
KW   Repetitive sequence; transposon; unidentified reading frame.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4089
RA   Potter S.S.;
RT   "DNA sequence of a foldback transposable element in Drosophila.";
RL   Nature 297, 201-204 (1982).
XX
DR   GenBank; V00246; Positions       1    4089.
XX
SQ   Sequence 4089 BP; 1426 A; 636 C; 707 G; 1320 T; 0 other;
     agctcaaaga agctggggtc ggaaaaatcg aatttttgaa atttgaaagc tggaatcgtt        60
     tgcccatttt ttgcccatgt ttgcccacca attagttttt tttgcccacg tccagttttt       120
     gagatatgga ttttcgaaaa agttcgaaaa tgttcgaaaa tcaaaaattt cgcttttttc       180
     aaattttttt ttttttaaat cgcaataaca tcgtttgccc acgtttgccc accctttaga       240
     attttgaaaa aatttatact ttagaaaata taaggctttt aagtttacct cggtctaatc       300
     agagagtaaa tcgtttgccc atctcttaaa accaaatatt atcaacaaaa aacgtttgcc       360
     caaccattat tattagtttt tatcgtttgc ccacccttta aaaaaccttt aacaaaattt       420
     ttttttcgat tgcccacact tgaaatacaa ccaatttcgt tagcccacct cttcaaaata       480
     aatatttcca ataaaaaacg ttttcccacc atttaaaaat aaataatttc gattgcccat       540
     ccttcaaaat tcattttaac gtttgcccac cctttaaaat ttgttttttt cgtttgccca       600
     ctcttaaaac taaataattt cgattgccca ccttttaaaa ctaaataatt tcgtttgccc       660
     atcctttaaa attcattttt aacgtttgcc caccctttaa aaataaatta tttcgtttgc       720
     ccacccttta aaatttgttt ttttcgtttg cccactctta aaactaaata atttcgattg       780
     cccacctttt aaaactaaat aatttcgttt gcccatcctt taaaattcat tttaacgttt       840
     gcccaccctt taaaaataaa ttatttcgtt tgcccaccct ttaaaagttt ttttttttcg       900
     tttgcccact cttaaaacta aataatttcg attgcccacc ttttaaaact aaataatttc       960
     gtttgcccat cctttaaaat tcatttttaa cgtttgccca ccctttaaaa tttgttttgt      1020
     aagatgtggc gccaattcag atattttagg atcggcggat agaagcactt acttatatga      1080
     tgatgatgaa catacataga cataatatgt acagctgtgt tcagaaaaat agcagtgcga      1140
     aggaaactaa gtaatacaaa ggtatttttc catgtccctt ttcggaatcg actttttatt      1200
     cctcttattt ttgttaaatg gaatgtgtag atagggaaaa aaagaaaatc cggtcagttt      1260
     ttcttgttat ccttttttta tttacattct tgagcaaaat cacaattttt aggctgttca      1320
     taagaatagc agtgtctggt tctgaccaac gtaaagtccc gaaatgatca atattttcta      1380
     aaaagtgagt ttggttaagt taattcgtat atttaaaagg acaataaatt aaaaaaatta      1440
     aaaaaatttt attttagtgg gtagaggaca gcactactcc caggggaaaa gaatgttaat      1500
     tcttaagctt agaaaggaag gaaaaacata taaggacatt caaaaaaccc ttaaatgttc      1560
     tgccaaaatg gtatccaatg ccattaaata taaatggaag cccgaaaacc gtggtaccaa      1620
     acataaaacc acagatatag aggatcgacg cattgtttct tacagcaaag tctatcgttt      1680
     tgcatccttt agggacataa agtctgagct gaacttggga atcagcgacg ttactattcg      1740
     tagacgacta ctgaatcaaa atttcagtgc gaggagtcca cgaaaggttc ccctacctag      1800
     cccaaggcat attaaggcaa ggttaagctt agctaaaacc tacctaaact ggccagtctc      1860
     caaatggcgt aatatccttt ggactgatgg gtcaaaaatc atgctatttg gtggaactgg      1920
     ttcactacag tatatctgac gacctccaaa cacggagtat cacccaaaac acccagtgaa      1980
     gactttcaat cacggtggac ctaaaatcat ggtatgggct tgtttttttt ataatggtat      2040
     gagtcatgct atggattatg atttatggta ttatagacca aaacgcatat gtaaatatac      2100
     ttagtgatgt cttattgtca tattctgaat aaaatatacc cttaaaatgg acattccaac      2160
     aggataatga tcagaaacgc agatgtaaat cggctaagaa taggttcacc caaaatagaa      2220
     tagatgcaat gccgtggcaa gcaccacctt cccatttaaa cccgattgaa aacctgtatg      2280
     gggacattaa acagtttgtg tcgaagaagt ccccgacgtc taagactcag atttggcaag      2340
     ttgtgcagga tacatgggca aaaattcctc ccaaaccttg ctaggacttg gtggacttca      2400
     tgccgcgtgg gtgtaaggct gtgctggcta acaaaggcta tccagccaag tattaggccc      2460
     gaattaacat attaaaaaga aaaactaagt tcgttctagg tcaagttaaa ttttgttact      2520
     attttttcat agcactgcta ttttattgaa caccagaatt tctgcctatt tattgtttta      2580
     atctatattt tcgaaactat tgaagaaata aaagtgaaac atttgttaaa ttgtttgaaa      2640
     tgaaatacct aatgatatta ttaaaaaaaa attcccatta aaactgtaaa tcataggaat      2700
     tttttatctt aaactctgaa gtccaaagca ctgctattat tctgaacaca gctgtacata      2760
     acgaaataat ttatttttaa agggtgggca aacgttaaaa atgaatttta aaggatgggc      2820
     aatcgaaatt atttagtttt aagagtgggc aaacgaaaaa aacaaatttt aaagggtggg      2880
     caaacgaaat actttatttt taaagggtgg gcaaacgtta aaaatgaatt ttaaaggatg      2940
     ggcaaacgaa attatttagt tttaaaaggt gggcaatcga aattatttag ttttaagagt      3000
     gggcaaacga aaaaaacaaa ttttaaaggg tgggcaaacg aaataattta tttttaaagg      3060
     gtgggcaaac gttaaaaatg aattttaaag gatgggcaaa cgaaattatt tagttttaaa      3120
     aggtgggcaa tcgaaattat ttagttttaa gagtgggcaa acgaaaaaaa caaattttaa      3180
     agggtgggca aacgaaatac tttattttta aagggtgggc aaacgttaaa aatgaatttt      3240
     aaaggatggg caaacgaaat tatttagttt taaaaggtgg gcaatcgaaa ttatttagtt      3300
     ttaagagtgg gcaaacgaaa aaaaaaaact tttaaagggt gggcaaacga aataatttat      3360
     ttttaaaggg tgggcaaacg ttaaaatgaa ttttaaagga tgggcaaacg aaattattta      3420
     gttttaaaag gtgggcaatc gaaattattt agttttaaga gtaggcaaac gaaaaaaaca      3480
     aattttaaag ggtgggcaaa cgaaataatt tatttttaaa gggtgggcaa acgttaaaaa      3540
     tgaattttaa aggatgggca aacgaaatta tttagtttta aatggtgggc aaacgttttt      3600
     ttttggaaat ttttatttta aagaggtggg ctaacgaaat tgggtgtatt ttaaatgtgg      3660
     gcaatcgaaa aaaaattttt gttaaaggtt ttttaaaggg tgggcaaacg ataaaaacta      3720
     ataataatgg ttgggcgttt tttgttgata atatttggtt ttaagagatg ggcaaacgat      3780
     ttactctctg attagaccga ggtaaactta aaagccttat attttctaaa gtataaattt      3840
     tttcaaaatt ctaaagggtg ggcaaacgtg ggcaaacgat gttattgcga tttaaaaaaa      3900
     aaaaattttg aaaaaagcga aatttttgat tttcgaaaat tttcgaactt tttcgaaaat      3960
     tcatatctca gaaactggac gtgggcaaaa aaaactaatt ggtgggcaaa catgggcaaa      4020
     aaatgggcat acgattccag ctttcaaatt tcaaaaattc gatttttccg accccagctt      4080
     ctttgagct                                                              4089
//
ID   S2_DM       repbase; DNA   ; DRO   ; 1735 BP.
XX
AC   .
XX
DT   07-MAY-2001 (Rel. 6.04, Created)
DT   07-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   S2_DM is a DNA transposon, a consensus sequence.
XX
KW   Mariner; DNA transposon; Interspersed Repeat;
KW   Mariner/Tc1-superfamily; S2_DM; S_DM; TIR; transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1735
RA   Kapitonov V.V.;
RL   Direct Submission to Repbase Update (APR-2001).
XX
CC   [1] (Consensus)
XX
CC   S2_DM belongs to the Tc1 superfamily of DNA transposons.
CC   There are ~10 copies of S2_DM which are ~94% identical to the
CC   consensus sequence. Putatively, S2_DM lost its activity several
CC   million years ago.
CC   S2_DM has 235-bp terminal inverted repeats and it encodes
CC   345-aa transposase (positions 403-1437). The S2_DM consensus
CC   sequence is 70% identical to S_DM. Their transposases are also
CC   70% identical to each other.
CC   The S2_DM transposase is interrupted by stop-codon at its
CC   C-tail (position 1384). Since the tail is conservative in
CC   Tc1-like transposons from different species, most of genomic
CC   S2_DM copies has been transposed as non-autonomous elements.
CC   S2_DM transposase:
CC   MPGKRLSFEVVQLIFYNHHLGKSVKELSEMFSASRRTIYNVINRAKNEGRLDSKCGAGRKNKISNRSDRL
CC   IMRKIYENPQISLRTVAKELKEECDLDVSHETVRQAILRHKYHSRVARKKPMLSAINIEKRLTFAIKMQH
CC   QPEDYWNNVIFCDETKMMLYYNDGPNRVWRKALTALENRNIIPTVKFGKLSVMIWGCISSRGVGDLAFIE
CC   NTMNAEQFLNILKCNLTSSAKKFGFYKNNRPDFKFYQDNDPKHKALNVRNWLVYDCGKVIDTHPQNPDLN
CC   PIENLWVHLKKKVAKRSPNNRAALKAAILEEWHKIPQQYDLEKLFFQ*KKRLQYVINAKGMHTKY.
XX
SQ   Sequence 1735 BP; 597 A; 279 C; 317 G; 542 T; 0 other;
     cagtttgtca agaaattgtt tgcacaatga aaataaattg tattttctgc ctttcaatgc        60
     aaaattaagg gctttttgtt taccttatgg atttttttta atttacattt atttgtttat       120
     atgtttttta tcaatatgta aaaaaataat aacaaaacta ttaacaatga acgagaaaaa       180
     caactaaatc caagtttgca cagatttgac actgtcaaga aattgtttgc acacttttct       240
     tttgttttct attttgctcc tattccgagg aatttcgata atcaaacggt acataatcgt       300
     catttacgct ttatgcgttg tgtgggtggc cgatttatat gcatttggtt gtgaaatttg       360
     ccaaagtgat cattgttcca gttagttttg tgaaatttag aaatgcctgg caaaagattg       420
     agttttgaag tagttcaact gattttttat aatcaccatt tgggaaaatc tgtcaaggaa       480
     ttgtcagaaa tgttttctgc atcgcggaga acaatttata acgttattaa tcgcgcaaaa       540
     aacgagggca gattggattc aaaatgtgga gcaggacgta aaaataaaat ttccaaccgt       600
     tcagaccgac ttattatgcg aaaaatttat gaaaatccgc aaatatcctt aagaactgtt       660
     gctaaggagc ttaaggagga gtgcgatctg gatgtgtcac acgaaacagt gcgccaagcc       720
     atactccggc ataagtacca ctcacgggta gcaagaaaga aaccgatgct gtcggcaatt       780
     aacatcgaaa aacggcttac tttcgctatc aaaatgcaac atcagccaga agattactgg       840
     aataacgtaa ttttctgcga cgaaaccaag atgatgttgt attacaacga tggacccaac       900
     agagtgtggc gtaaggcgct aactgcgctg gagaaccgca acatcatacc gacagtcaaa       960
     tttggcaaac tgtcggttat gatttgggga tgcatatcta gtcgaggagt tggagatttg      1020
     gcattcatag agaacacaat gaatgcagaa caatttttaa acattttgaa atgcaatctg      1080
     acatccagcg ccaaaaaatt cggtttttat aagaacaata gacctgattt taaattttac      1140
     caggacaatg accccaagca taaggcgctt aatgtgcgga actggctcgt ttacgactgc      1200
     ggcaaggtca tcgatacgca tcctcagaat ccagatctga accctataga aaatttgtgg      1260
     gttcatttga agaaaaaagt ggcaaaaagg tcaccaaaca accgagcagc actgaaagct      1320
     gctatactag aagagtggca taagatccca caacaatatg atcttgaaaa gttatttttt      1380
     caatgaaaaa aacgtctaca atatgttatt aatgctaagg gtatgcatac aaagtattag      1440
     aattacctca agttattata atttgttata aactataagt ctaagatagc ttaagtactt      1500
     tgtgcaaaca atttcttgac agtgtcaaat ctgtgcaaac ttggatttag ttgtttttct      1560
     cgttcattgt taatagtttt gttattattt ttttacatat tgataaaaaa acatatgaat      1620
     aaatagatat taataaaaaa aattcatgaa ttttaataaa aggcctttat atttttgcat      1680
     tgaaagtcaa aaatacaatt tattttcatt gtgcaaacaa tttcttgaca aactg           1735
//
ID   DM2         repbase; DNA   ; DRO   ; 4558 BP.
XX
AC   X15066;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   Drosophila retroposon microcopia Dm-2 3'end.
XX
KW   Repetitive element; Long terminal repeat; reverse transcriptase;
KW   Copia element; retroposon; DM2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4558
RA   Lankenau H.D.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (20-JAN-1989)Lankenau D.H.,
RL   Dept Mol Developmental Genetics, University of Nijmegen,
RL   Toernooiveld, NL 6525 Ed Nijmegen, The Netherlands..
XX
RN   [2]
RP   1-4558
RA   Lankenau H.D., Huijser P., Jansen E., Miedema K., Hennig W.;
RT   "DNA sequence comparison of micropia transposable elements from
RT   Drosophila hydei and Drosophila melanogaster.";
RL   Chromosoma 99, 111-117 (1990).
XX
DR   GenBank; X15066; Positions     379    4936.
XX
SQ   Sequence 4558 BP; 1425 A; 876 C; 1010 G; 1247 T; 0 other;
     agcaacctag ttatgatgtt aagctaccca aatttaaccc tgatgctgca tgcgtagagg        60
     cagcaaagtg gtgtccaaca accgatataa ttctaactga gcaccccctt aaaggaagta       120
     aattgatcat ggcactaagt aactgcatgg agggaactgc atctcagtgg ctaacacaaa       180
     tctcgtacca gggtatgact tggcaagagt tccaggaatt atttctgcag cgctttgaaa       240
     ccgaagagac gccggccgct acgtttttaa atttactcaa cagccgcccg actgccgccg       300
     aatgttacgc ggtgtatgcg agtcggctgg tgacgacgct gactacaaag tggcggaata       360
     tggaaataga agaaattgcc gttacaaccg ttcttgcgca tatggcaaac attgacagtc       420
     gtttgcagcg cgtcctcttc acatccaatg tgcgtaccag aagtaagcta caggcggagt       480
     taaaagcgtt tacgttcgac aagaagcgac atgctcgaga tgacaacctt ggacctgacc       540
     acaagaaccg taaggcatcg ccagttgtat gccacttctg ttcaaagccg ggacatcgaa       600
     ttgctgaatg ccgaagtaaa atgcgacaag atagacaggc gaaaccgcag cgtgaaaaat       660
     caaatgttac gtgctatcgg tgcggccaac cgggacattt ctccaaccag tgcccgaaaa       720
     acggaagtgc agccaaacaa gatgtgactc aacagaagac tgttaaccaa tgttgtgtga       780
     ctgagccaaa gggaagcttg catcaacgag gtgagatcta tccaatttgt ttcgattccg       840
     gtgcagagtg ctcccttatt aaagacgaca ttagcagtaa gttatctggt aaacgtataa       900
     acaatactgt aatgataaaa ggcattggtg gtggcagtgt gtgcagtaca ttgcaaatct       960
     tgagtgaagt cactataaac gaaaatatta tggaaatatt atttcatgta gtcccgaacg      1020
     agcaaatgag gaatgatatt ctgatagggc gagaaatact taaacaagac ttttatgtaa      1080
     ttttgacatc cgataatttt aaagttgtaa aatcaaaaac tgttaataat tgttctttta      1140
     tatgttaatt gcgctgttat gttactgtta ctgcattgta ttgattcatc gcttctaaat      1200
     aaataaatat ataaaaaaaa aaaattgttc cgttactgag cgatcgttta ctttgtccga      1260
     tattgacacc gaattagtcg acaatgagaa agctcaatta attgagttac ttgaaaagca      1320
     ctcgacttca tttaccaacg ggatacctca tactcgagta aatacaggcg aaatgaaaat      1380
     ccgtttgatt gatccaacta aaactgttca gcgccgacct tacagactta gccccgaaga      1440
     gagagaagta gtgcgaatcg aggtgagcga attgataaga tgtaatattg ttcgcccaag      1500
     ttgctctccc tttgctagcc ccatgttgct cgtcaaaaag aagaacggaa ccgaccgtct      1560
     atgtgttgat tttagagagc taaactcgaa cacgatttcg gataaatacc ccttgccgct      1620
     tatcagcgat caaattgcta gacttcgcgg agcaaattat ttcacatgcc tggatatggc      1680
     aagtggtttc caccaaatcc cgattcaccc tgaatccgtg gaatatactg catttgtgcc      1740
     agacggcctc aaaaatgcgc catctgtttt ccagcgcaca gtcataaatg cacttggtga      1800
     ccttgctaac tcttttgtaa tcgtttacat ggacgacata atggtagtat cgccaaccaa      1860
     ggaattggct ttggaaaggt taaaaactgt tttgaatgtt cttacaaagg ctggttttac      1920
     ctttaacctt gctaaatgca gttttctcaa aacaacggtt cagtatttag gctatgaagt      1980
     gcgagcggga gaaattcgtc cgaatgtgcg aaagatatct tcattaagct ccttgcctcc      2040
     tcctcaaact ctctccggcg ttagacaatt cattggcttg gcctcttact ttcgcaaatt      2100
     cgtgtctgga ttctcccaac ttatgaaacc attgtattca ctttcgtctg gtagcggcaa      2160
     gattacatgg agcgctgagc tggaagagat cagacttaaa gttgtgacga tcctcacaaa      2220
     tgagcctgct ctggtaatct tcgacccgca atatcctatt gagttgcaca ctgatgcaag      2280
     tgcctgtgga tatggagcga tacttttgca ccgtatagaa agtaagcccc atgtaatcga      2340
     atacttcagc aaaacaacta cctctgttga atctagatat cactcctacg agctggaaac      2400
     cttggcagtg gtaaaagccg ttaaacattt tcgccattac ctaattggcc gtgagttcgt      2460
     tgtctataca gactgcaatt cattaaaagc ttctcgcaca aaaatagatt taacccccag      2520
     agttcaccgc tggtgggcct acttacaatc gtttaatttc gaaattcagt atagagaggg      2580
     taagcgtatg gctcatgtgg atttcctatc aagaaatcct ttatcacccg aacacaattt      2640
     gtcaataaac aagattcccg aaaaaagagt aaatctgtct gaaatttcaa gtacttggct      2700
     tcttgctgag caacggttag accttgagat aatagaaatt gttaacaaat tggagtcaga      2760
     tgaattggcc gaaaacttgg ccaaaacgta tgatttgcga aaaggtgtat tatatcgcaa      2820
     ggtccaaaga cgaggtagaa caagttattt accagttgta cccagagctt tcaaatggtc      2880
     agtaattaac caggtacacg agtcgataat gcatttaggg tggcaaaaga cacttgataa      2940
     agtgtaccag tattattggt tcgctaaaat gaacaagtat gttcgaaaat ttttttcaaa      3000
     ctgcataact tgtagatcag tgaagtcatc ttccgggaag gttcaggcgg aacttcattc      3060
     cattccgaag acaagtatac cgtggcacac catccacata gatataacgg ggaaattaag      3120
     tggcaagagc gatttgaagg aatatgtcat tgttcagatc gatgcctata caaagtttgt      3180
     ttatctgtat cacaccttaa agatagatgc cgaaagctgt gttaatgcta tgaaatcttc      3240
     catatcctta tttggagtac cagatcgcat catcgccaac cagggcagat gttttactag      3300
     ctctaagttt tcagagtttt gcgtatcgca gaaagttgaa cttcacttga ttgctacggg      3360
     aatgagccgt gcaaatgggc aagtggaacg ggtgatggaa acactgaaaa atttgttgtc      3420
     agtggtagaa tcaagtcaac gatcgtggca ggacgcactt ggcgaagtcc aacttgcact      3480
     gaattgtaca atttctcgtg ccactgaggc aagtccgtta gaaatgttaa ttggtaaaca      3540
     ggcttgaccc cttggattag ttcccccatg tgagaccgaa tgtgaaatag atatggcaac      3600
     tgttagagct catgcgacag aaaatatgaa ttcttagcgt cttacgacaa atcccgattt      3660
     gatagcagta gggcagccgt tgacaaacac cacgtaggtg actatgtgct attgaggaat      3720
     gaagaaagac accaaactaa gttagatccg aaattcagag gaccgttttt ggtaactgaa      3780
     gtattagagg gtgacaggta tacactaaag tcgttgacga gtaaccgatc gttcaagtat      3840
     tgccatgaag atatacgtaa aatgccggat gcagaaatcc cgaatgagtt aaacgagaat      3900
     gtagagcaat agctgaaata tagaaacagt tgaatgaaaa gaaaagcccg ccaatgagtt      3960
     cttttgtgaa cgagagatat ccgtctaggt gagacgatga attgtgagtt atccgtctag      4020
     gtgagacgat gaattgtgag ttatccgtct aggtgagacg atgaattgtg agttatccgt      4080
     caggtgagac gatgaattgt gagttatccg tccaggagag acgatgagtt tggattgaat      4140
     taataatcaa gtgtgtgtga actggcggaa gatcgatata tagaaatcga taaatgataa      4200
     tgttaagata agttgtgagc tgatgtatta ctgatcaatg gaactgaata tgaaaataga      4260
     ataagttatc ccagcaacag tgaaataaga gctgttttgt ttcttcacag aattaagatt      4320
     taagaaatac acctaataaa gtcaaactaa tgaaattaaa tgttattgaa tagtgatgaa      4380
     agtaggtgat cttgatatct tggtatctcg gtatcaaaag cttacacgag gacgtgaaat      4440
     gtcagaatgg ccgtgtcgtg gcgaaaataa tgagtatgcg tgtagtcgct gtttacttct      4500
     tctccatgtt ccctttgcta ttatgcgtgt tcctatttat gaacacgtgg caaaaata        4558
//
ID   DMLTR4      repbase; DNA   ; DRO   ; 478 BP.
XX
AC   J01110;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.melanogaster mobile dispersed genetic element mdg1, 5' LTR.
XX
KW   Repetitive element; transposon; terminal repeat; DMLTR4.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-478
RA   Kulguskin V.V., Ilyin V.Y., Georgiev P.G.;
RT   "Mobile dispersed genetic element MDG1 of Drosophila
RT   melanogaster: nucleotide sequence of long terminal elements.";
RL   Nucleic Acids Res 9, 3451-3464 (1981).
XX
DR   GenBank; J01110; Positions      31     508.
XX
SQ   Sequence 478 BP; 142 A; 71 C; 80 G; 185 T; 0 other;
     tgtagttaat ttgaattcta atacttctga tgtagttaat aaagtctcaa aacgcagttg        60
     gtcattttat ctttatttgg tttttattaa gcgagtgtac attcctgatc tattcctgat       120
     ttataactga tcttagtgtg gtctacaggg agatctcttg tgacagccaa gtgctgacac       180
     tagcaaattc tgcaatatgt atgtatgaag ttcatactcg ataaccaatg ggagtcgagt       240
     ccgaccccta aaggcgtaca tcctgaattc gcatatttag tattagggtg tatctaaaga       300
     tctactaggg tgaccctaag gaattagggt ggtcctaagt ttacttatta gttgacttat       360
     tattatgatt catattataa ttattattaa tattattatt attattgtta ttattattgt       420
     tattatattc gtatatacta catctccctc cttttgaaaa ataacgtaat aacatgaa         478
//
ID   FW2_DM      repbase; DNA   ; DRO   ; 3961 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.1, Created)
DT   11-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   FW2_DM is a non-LTR retrotransposon - a partial consensus.
XX
KW   Jockey; Non-LTR Retrotransposon; Interspersed Repeat; FW2_DM;
KW   JOCKEY clade; ORF1; ORF2; endonuclease; reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3961
RA   Kapitonov V.V., Jurka J.;
RT   "FW2_DM, a family of Jockey-like non-LTR retrotransposons from D.
RT   melanogaster.";
RL   Repbase Reports 2(10), 5-5 (2002).
XX
CC   [1] (Consensus)
XX
CC   FW2_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   FW2_DM is a separate family. Members of this family are ~95%
CC   identical to the FW2_DM consensus sequence. Therefore,
CC   this family was active a few million years ago. FW2_DM is 68%
CC   identical to FW. The sequence is incomplete, a ~500-bp 5'
CC   terminal
CC   portion of FW2_DM is not reconstructed yet.
CC   There are 10 copies of FW2_DM present in the sequenced portion of
CC   the D. melanogaster genome.
CC   The FW2_DM consensus sequence includes two open reading frames
CC   that
CC   encode the 417-aa FW2_DM-ORF1p (positions 2-1249) and 859-aa
CC   FW_DM-ORF2p (positions 1256-3832). These proteins are similar to
CC   the Jockey-like DNA/RNA-binding and endonuclease/reverse
CC   transcriptase
CC   proteins, respectively.
CC   FW2_DM-ORF1p (positions 2-1249):
CC   XSTTQTAIDRYIQIKRKLSPQNYSMGNKSKINCDITRQKTNMPNNDNRFAILADLDDLPNSDKDIKKTPK
CC   PPPIYIREKSSSALVNKKMDLIEKDSFHIIPLTKGNIHETKVQVKTEVNFRALTKYLNDAKKNFYTYQPK
CC   SSKGLQSSIKGLRPEITPEEISGAQIEQGFKPKSVINIFNKDKKPQPLFKVELEPDSWALKKNESHPIYK
CC   LQYLLHRRISVEEPHKRKGPVQCANCQEYGHTKTYCTLRTVCVACGELHSSVNCPSNKADPGMKKCSNCG
CC   GNHTANYRGCPVYKDLKNRLHQKVTMMRGQSTPSTIIPSKHTPDVHLNSLTNRNVTFASALKSGLASTNP
CC   TTPFPLAEQNKVNADQPTGQPQGNIETMIFNLQQSMTEFMTFMRTTMENLMRNQDLLIQMLVSQQSK
CC   FW2_DM-ORF2p (positions 1256-3832):
CC   MAPLRITLWNANGVSRHKLEMAQFLQDKHIDVMLLSETHLTNKYKFQINGYIFYGTNHPDGKAHGGTGVL
CC   IRNRIKHTFRNDFGTNYLQATSLNIQLGNGQITLAAVYWPPRFTISENQFLDFFNTLGDRFIAAGDYNAK
CC   HTHWGSRLVTAKGKLLYKTIIKVSNKLSCASPGTPTYWPTDPRKIPDLIDFAVTRNISHNHINAESLPDL
CC   SSLAGLINYLQYADLKNSPCRVTSNRTNWLKYKKFVSSHIQCLNPRKKQTVQYMQRKPNVQIEQLVLKKR
CC   RLRREWQSYRSPFAKQGLNNATHTIRKEVINEQECAQRPYIAQLSPFSTKYPLWGLHPSVSPPVESVVPI
CC   RNSAGEWVRSDKHRASTFAEHLQNVFQPKPATNNFVLQEQTVVSQTTQNTIEFRPTEIAKIIKELKPNKS
CC   PGSDLINPKMIIELPFCAVQTICQLFNAINRIGHFPSLWKKSIIIMIPKPGKDHTVPSSYRPVSLLPCMS
CC   KLFEKCLLTFIIPYLRTFNKIPEHQFGFQEKHGTIExVNRITTEIRTAFEKREYCTAIFLDVAQAFDRVW
CC   LDGLMHKIMSTLPECTHKLLKSYLHNRVFSVRCGTVTSEDHIIEAGVPQGSVLGPTLYLLYTADIPTSRQ
CC   LTISTFADDTAILSRSKCPRQATAQLALYLAHIEKWLSDWRIKVNEQKCKHVTFTLNRQDCPSLILNNTV
CC   IPKSNEVTYLGIHLDRRLTWRRHIEAKRTHLKLKANSLHWLLSIRSPLRLEYKVLLYNSVLKPTWTYGSQ
CC   LWGNASNSSVEIIQRAQSKILRTITGAPWYVRSDNLHRDLFILPVRDEIAKQMEKYRNKLRAHPNRLARD
CC   LTRLSSRTRLRRNDMPTQR.
XX
SQ   Sequence 3961 BP; 1386 A; 941 C; 701 G; 932 T; 1 other;
     atcgaccaca cagactgcta tagatcgata catacaaata aagcgaaaac taagcccgca        60
     aaattattca atgggtaata aatcaaaaat aaattgtgac ataacaagac agaaaactaa       120
     catgcccaac aatgataacc gatttgccat tttggccgat ttagacgatc tgccaaattc       180
     tgacaaagac attaagaaga cccctaagcc gcctccaatc tacatcagag aaaaaagttc       240
     cagcgccctc gtaaacaaaa aaatggacct tattgagaaa gacagtttcc acataattcc       300
     cctgaccaag ggcaacattc atgaaacaaa agtgcaagtc aaaacggaag taaacttcag       360
     agcgcttacc aaatacctca acgatgccaa gaaaaacttt tatacgtacc agccaaaaag       420
     cagcaaggga ctacaaagta gtattaaagg ccttaggcct gaaataaccc ctgaggaaat       480
     atcaggagcc caaatagaac aaggttttaa gccgaaatca gttatcaaca tatttaacaa       540
     agataaaaag ccacaacctc ttttcaaggt cgaacttgaa ccagactctt gggcattgaa       600
     gaaaaacgag agtcacccca tttacaagct gcaatatctc ttacaccgta gaatctctgt       660
     tgaagagccg cataagcgca aaggacctgt acagtgtgca aattgccaag aatatggtca       720
     tacaaaaact tattgtaccc ttcgcactgt atgtgtagct tgtggtgagc ttcacagctc       780
     tgttaactgc ccatcaaaca aagctgaccc cggtatgaaa aagtgtagta actgcggagg       840
     taaccacaca gcaaactaca gaggttgccc tgtatataag gatctaaaaa atcggctaca       900
     ccaaaaagtg actatgatgc gtgggcaaag cacgccgagc acaattatac cctcaaaaca       960
     tacacctgat gtccacttaa acagtctgac caacaggaac gtaacatttg caagtgcgct      1020
     taaatcaggt cttgcatcta caaatcctac aactccattc ccactcgctg aacaaaacaa      1080
     ggtaaatgct gatcagccaa caggacagcc acaaggcaat attgaaacaa tgatctttaa      1140
     cttgcaacaa agcatgaccg aattcatgac atttatgaga acaaccatgg aaaatcttat      1200
     gcgtaatcag gatctattga tacagatgct ggtatcgcag cagtcaaaat aatcaatggc      1260
     tcccttacgt ataactctat ggaatgccaa cggcgtttcg cgacacaagc ttgaaatggc      1320
     tcaatttctc caagacaaac atatcgatgt aatgctcctt tctgaaacac atcttacaaa      1380
     caagtacaag tttcaaataa atggttatat attctacggc accaaccacc ctgatggtaa      1440
     agcacatgga ggcactggag tcctgattag aaaccgcata aaacatactt tccgcaacga      1500
     ctttgggaca aactacttac aggcaacatc tttaaatata cagctgggta acggacaaat      1560
     aacacttgct gctgtatact ggccacctcg ctttacgata tccgaaaacc aatttttgga      1620
     ttttttcaac acactagggg atcgcttcat agctgctggt gactacaatg ctaagcatac      1680
     gcactgggga tctcgtcttg taaccgctaa gggaaaacta ttgtacaaaa caattattaa      1740
     agtaagcaac aagcttagtt gcgcctcccc gggcacacct acatattggc caacggaccc      1800
     cagaaagata ccagacttga ttgactttgc tgttacaaga aacatctctc ataatcatat      1860
     aaacgccgaa tctctcccag acctatcttc tctggccggg ctcattaatt atcttcaata      1920
     tgcggatctg aaaaattcac cctgtcgagt gacatccaat agaactaact ggctaaaata      1980
     caagaaattc gtaagttcgc acattcaatg cctgaaccca agaaaaaaac aaactgtaca      2040
     gtatatgcaa cgtaagccaa atgttcaaat tgagcagctt gtcttgaaaa agcgccgcct      2100
     acgacgagaa tggcaatctt atagatcgcc atttgcaaaa caagggctca ataacgcaac      2160
     tcatacaata agaaaggagg taatcaacga gcaggaatgc gcacaacgcc cctacatagc      2220
     gcaattatca ccctttagca caaaataccc attatgggga ctacacccct ctgtaagccc      2280
     accggtagaa tctgttgtgc caataagaaa ttctgcaggt gaatgggtcc gcagcgataa      2340
     acatagagct tctactttcg ctgagcacct tcaaaacgta tttcaaccaa agccggcaac      2400
     gaataatttc gtattacaag agcaaacagt tgtaagccaa acgacacaga atacaataga      2460
     atttcgacca actgaaattg ctaaaatcat taaggaatta aagcctaata agagccccgg      2520
     cagcgatcta ataaacccta agatgatcat cgaacttcca ttttgtgccg tccaaactat      2580
     ttgccagctc ttcaatgcaa taaatagaat tggccacttc ccttcgttat ggaaaaagtc      2640
     gatcatcatt atgataccga aaccgggaaa ggatcataca gttccatcat catacagacc      2700
     tgtaagttta ctaccatgta tgtcaaaact cttcgaaaaa tgtctgctga cctttattat      2760
     accctatctg cgaactttta acaaaatacc ggagcatcaa ttcggttttc aggagaaaca      2820
     tggaacaatc gaasaagtca atcgaatcac aactgaaatt cgaactgcat tcgaaaagag      2880
     agagtactgc actgccattt ttctcgacgt ggcacaagca tttgacagag tctggttaga      2940
     tggcctaatg cataaaatta tgtcaacact ccctgaatgc acccataagc ttttaaagtc      3000
     gtacctgcac aatagagtgt tctcagttag atgcggcact gttacgtctg aggaccacat      3060
     catagaagct ggggttcctc aaggcagcgt acttggccca acactatatc tactatatac      3120
     agccgatata ccaacatcga ggcagctaac aatatctaca tttgccgatg acactgcaat      3180
     cctgagccgc tctaaatgtc cacggcaagc tactgcacaa cttgctctct acctggcaca      3240
     tattgagaaa tggctttctg actggcgaat aaaagtcaat gaacagaaat gtaaacacgt      3300
     aacttttacc ctcaacagac aagattgccc ttcgctcata ctaaataaca ctgttattcc      3360
     aaaatcaaat gaagttacgt atctaggtat tcatcttgac agacgactca cttggcgtag      3420
     acacatcgag gcaaaaagaa cacacctcaa actaaaagcc aatagtctac attggcttct      3480
     tagtatacgc tctcccctaa gactagaata taaggtctta ctctacaact ccgtcctaaa      3540
     accgacctgg acctatggct cccagctatg ggggaacgcc agtaacagca gcgtagaaat      3600
     catccaacga gcccaatcga aaatcctgag aaccatcacc ggcgcaccgt ggtacgttcg      3660
     aagtgataac ttacataggg atttattcat acttccggtc agagatgaaa tagccaaaca      3720
     aatggaaaaa tatcgcaaca aactacgtgc ccatccgaac aggcttgcga gagacttaac      3780
     acggctatct agccgaaccc gacttcgtcg taatgatatg ccaacccaac gataattatt      3840
     agggccacac aaactcatat cagttgcaat agtaactgtt agttaagtac tttttaagat      3900
     ttgtaaactt attgttagtc tcataatgag aagcttcaat aaacaaacca acgcataaaa      3960
     a                                                                      3961
//
ID   TRANSIB2    repbase; DNA   ; DRO   ; 2820 BP.
XX
AC   .
XX
DT   14-AUG-2000 (Rel. 4.3, Created)
DT   14-AUG-2000 (Rel. 4.3, Last updated, Version 1)
XX
DE   TRANSIB2 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; TRANSIB family; TRANSIB2p transposase; TRANSIB2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2820
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB2.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB2 belongs to the TRANSIB family of DNA transposons.
CC   It has generated 5-bp duplications of the CANTG target
CC   sites upon its integration into the genome. TRANSIB2 has 43-bp
CC   terminal inverted repeats and it encodes putative transposase
CC   which is not similar to any known transposases.
CC   There are ~30 copies of TRANSIB2 which are ~95% identical to the
CC   consensus sequence. Several sequences are 98% identical to each
CC   other and form a minor subfamily that was active most recently in
CC   the D.melanogaster genome.
CC   TRANSIB2 encodes protein TRANSIB2p involved in transposition:
CC   FYIGKFEFRHSDLLYIWRRNNRQVSYVSDYISSAINNNNLESKKTEEIDKKIVNFELFIKRKLP
CC   ECNRQLDRFISKHTKWMASKITILVSDFENSKTPQQMGRRNLSYQNAGERLKRKLASNLASESD
CC   HDTSLLIHAATVSARKECKRDVAFVLKETLKTPEFPSESRMQIQWQKPTPLSPDEALAYLLENT
CC   LTKQQYISTRLLNKSHNSDIYPPYNEVIEAKLQCRPEGIEVMENTAQVLLQNLLDHTAQRLIKL
CC   QSDVFKQFPDIFKIKLICSYGFDGTTGHSAYKQKFETEALGTPISDQSLFVTSVIPIQIIDSFN
CC   RHIWINRAPQSIRFSRPLKIELIKETAVHIMMEKNQLDNQINNLTPFTYKCDETRDIEVTYEMH
CC   MTLIDGKVLNVLTDTKSTQCCPICGVSPTQMLKITNFSSETFAPKVKALQFGVSPLHAWIRFFE
CC   FVLNVSYRDKRIKPR
CC   This protein is 43% identical with TRANSIB3p (42% identity with
CC   TRANSIB1p, the last protein is not complete).
CC   There is only partial ~60% nucleotide identity between TRANSIB2
CC   and TRANSIB1 or TRANSIB3.
XX
SQ   Sequence 2820 BP; 1016 A; 485 C; 491 G; 826 T; 2 other;
     cantgcacta tggtccagaa ttcgtttttt tttggcataa agtctaaatt tttatgtcaa        60
     tatatcgtcc tttagcaatt attttctaat agaaaattga tcatataaat aaaaaccaaa       120
     aacaaaattg accgaaagct tcactaaatc gttttatgag cttttaaagg tgaagtgtta       180
     aacagctgat tgagagaatg caattcccgc caaattattt gcttactttt gcacgtggta       240
     cgatcgttaa tacgcatcca taaattatag taaaatatgg aaaataaatg ccaaggtatg       300
     ttgtttttaa cgtatgtagt taatatatgt gtagttgtac tgtttttgtg ttgtgtaaca       360
     tccaatttat gtgtatttta acagaaaatt ctaacgtgtc ccctgtgttt cgtggagtat       420
     aactaatttt ctgacaattt ctcacaaatg ttaaaaacgt ccgtttttat ctttaactat       480
     tgtctttgac ggtaaagtaa tatcttttgc ccatttttgc tcgttttcct aaaatttgat       540
     tttatatagg caagttcgag ttcagacata gcgacctcct gtacatttgg aggcgtaaca       600
     atcggcaagt aagttatgtt tcagattaca tttcttctgc aatcaacaac aataatctgg       660
     aatcgaaaaa gacagaagag attgacaaaa aaatagtaaa ttttgaatta ttcattaaaa       720
     gaaaactgcc cgagtgtaac agacaactag accgatttat ttccaaacat actaagtgga       780
     tggcgtctaa gataacaatt cttgttagtg attttgaaaa ctccaagaca ccacagcaaa       840
     tgggacgccg aaacttatct taccaaaatg caggagaaag attaaaaagg aaactggcat       900
     ccaatctggc aagtgaaagt gatcacgaca caagtctttt gattcatgca gcaactgttt       960
     ctgctagaaa agaatgcaag agggacgttg cctttgttct taaagaaact ttaaaaacac      1020
     cagaatttcc aagcgaatcg aggatgcaaa ttcaatggca aaaaccaact cctctttcac      1080
     cagatgaagc tctagcttat ctcctggaaa acacgctgac aaaacagcaa tatataagca      1140
     ccaggctttt aaataaaagc cataacagcg acatatatcc gccctataat gaagtgatcg      1200
     aagcaaaatt acagtgccga ccagagggta tagaagtaat ggaaaacact gctcaagtgc      1260
     tattacaaaa tctcttggat catacagcgc aaagattaat taagttgcaa tctgatgttt      1320
     tcaagcaatt tccagatata tttaaaatca aattaatttg cagctacgga tttgatggga      1380
     caactggtca tagtgcttac aagcagaaat ttgaaactga agcacttggc acaccaattt      1440
     ctgatcaatc tttatttgta acttctgtca tacccataca aattatagat tcgtttaatc      1500
     ggcatatctg gataaacaga gcaccgcagt ccattcgatt ttccaggcct ctaaaaattg      1560
     agttgataaa ggaaactgct gtccacataa tgatggaaaa aaatcagtta gataatcaaa      1620
     ttaataatct tacgccattc acttataaat gtgatgaaac tcgtgacata gaagttacct      1680
     atgaaatgca catgacactt atagatggaa aagtcctaaa cgtattaaca gacactaaat      1740
     ctactcaatg ttgtccgatc tgtggagtca gcccaacaca aatgttgaaa attacaaatt      1800
     ttagttcaga aacctttgca ccaaaagtaa aagctttaca attcggggta agtccattac      1860
     atgcttggat ccggtttttt gaatttgttt taaacgtatc ataccgagat aaacgtatca      1920
     agccgagata aaaaagtggc atactaaagg agaggacaag gttaaaataa gtattcgaaa      1980
     aaaatatatc caggaggaaa tgtggagaga aatgggcctt cgagtaagca tgccgaagca      2040
     gaatggcagc ggcaatagca atgatggtaa tacggcaaga agagatttcg caagtaccaa      2100
     attctcgtcg ataaccagct tcaacgaaaa tcttttggaa aagtttcaca ttattttaat      2160
     agcaatatcg tccaactatt ttataaattc cgacaaattt cgttcttttt gcgatataac      2220
     ttttcaatta tatatccgaa catatcaatg gtatccctat gtcatcaagc ccggaataaa      2280
     ctttacaaaa gggaccgact atcacatgca aggaaaaata gtcggatcaa tacgatgagt      2340
     gatattttcc acagagcgat tgattcctcg gacccactat tatcaacaat ttgtttaaaa      2400
     gaaagagaga gaaaaaatag gaaaaaacca cttccgaagg cagtaataag tcttttggaa      2460
     atacagtcta attttaaacc tgatccatca gacaaaatat tggattcaca ttctgattct      2520
     gattcgagtt cagattcgga aatttataat gttgaactag aagaagaaga gggcgattat      2580
     ttttaaaaca acaatataca cacttttatt taaaaaaaaa aaaaaacaat gaaatttcgt      2640
     tgactcctga gtcataccag tagttaatat gggaggcaag agagggcgtg gtcgcacaga      2700
     cttcaaattt tgtgtgcaaa ctatttgtgg tttaacaaca aaatgtacaa agtttcaagt      2760
     ctgtagctca atttttagac tttatgccaa aaaaatcgaa ttctggacca cagtgcantg      2820
//
ID   INVADER1_I  repbase; DNA   ; DRO   ; 3186 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-JUL-2005 (Rel. 5.03, Last updated, Version 2)
XX
DE   INVADER1_I is an internal portion of INVADER1 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   endogenous retrovirus; GYPSY superfamily; INVADER group;
KW   INVADER1_I; INVADER1_LTR; gag; integrase; protease;
KW   reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3186
RA   Kapitonov V.V., Jurka J.;
RT   "INVADER1_I.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
CC   [1] (Consensus)
XX
CC   LTR of INVADER1 retrotransposon is listed in Repbase Update as
CC   INVADER1_LTR. INVADER1 can be an active retroelement since some
CC   of
CC   its proviral copies are almost identical and flanked by
CC   identical LTRs.
CC   INVADER1 generates 4 bp target site duplications upon its
CC   integration
CC   into the drosophila genome.
CC   INVADER1_I encodes gag, protease (peptidase A2), integrase and
CC   RT:
CC   1 32       897      1495 1896 1966 2499      3186
CC   111111==(=========)=(====)===(====)=(=====)=========111111
CC   LTR          |        |        |      \             LTR
CC   |        |        |       \
CC   |        |        |        \
CC   |        |        |         \
CC   gag   protease  Integrase    RT
CC   (peptidase A2,
CC   or retropepsin)
CC   INVADER1 belongs to the INVADER group of GYPSY-like transposons
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER2, INVADER3 and
CC   so on.
XX
SQ   Sequence 3186 BP; 959 A; 612 C; 728 G; 887 T; 0 other;
     tcagaagtgg gatcgcctat acctactttg aacaatgaaa atagtttgct gacaattttg        60
     gagtcgcaaa atcgtcattt ttccgaactt ttgaaacaag tgcaacactc acaaagagag       120
     tcaagagaat cgtttgctgt ggtattgccc aggtttaatc ctgaacgtgc gggatcagat       180
     gcgcaatcct ggtgttcaac ggtggactac atcttgtccg aaaaccaact ggaaggcagc       240
     gctcttgtga tgacccttag caaatcactg gaaggaagcg cgtctcattg gctttcacag       300
     acttgctttc ctggtatatc atggccacag ttccgagaat tgtttttgct acattttgcg       360
     ggaacagaaa cattagcggc agccgttatg aatctgctaa atggacgccc tgcggaaggc       420
     gagtgcctgt cgttatacgg aagccgaatg gttacttcgc ttatggccaa atggaagacg       480
     ctgagcgtgg agcaaatcgc agtctccatt acactggcgc atgcagctgg aattgacagg       540
     cgtttgcggc gtttagtttt cacttccgac atcaacactc ggaacgagct gaaccaagaa       600
     ctaaaggcct attcattcga cgctagaccg agccaccttc caaacgatgg tacatcagag       660
     ccgccaggaa aacgagctaa gccctacttc aagtgtcaca actgcggaaa gcctggtcat       720
     aaaaaggcgg attgtcgatc aaaaacagtg gcagtgcacg ttcagcaacc cgacaggcaa       780
     ccatcaggga aagaccggtc tactttgact tgtttcaact gcggaaaagc tggacacatc       840
     tccaccgtat gtcctgatcg tcaggagcgt tcatcgtcta gcaaaaataa cattgtttaa       900
     gatgtcaaca tctgtaccgt ttttgagccc gtacggacgt tttcgcaatc tggtgagtcg       960
     ttccaatttt gttttgattc tggagccgag tgttcactca tcaaggaggc tacttcgcag      1020
     agactatctg gatccagaat gggcaacgta gttattttaa ggggtcttgg tagcaatact      1080
     atttgtagca ctttgcagat attggctaat gttttgataa gtgaacgctc atatgaaata      1140
     ttgtttcatg tagtgttaga caattatatt aagtatgacg ctctgattgg tcgagatatt      1200
     ttgagccagg gagtcggtgt gacaataaca tcaaaatctc ttactatgtt taacgaaaaa      1260
     tctatattgt ctgttgaagt ttccgaaaag aatcccgatt tggctcatgt tgactttctg      1320
     tctcggaatc cggttccaaa aattgtcaag aattccatag gcgtagtcga aaggcatatc      1380
     aatctgacag aaatatccga caactggtta ttggctgaac agcaaagaga cgaagaaact      1440
     tcttccatta tctctaaatt gcgtaataat gaattgtccg aggatttggc caagacttat      1500
     gaactacggt ctggaactat gtaccgaaaa attcaaagaa atggaaagac tcgatgtctg      1560
     cccataatcc caaagcagtt taggtggtcc gctgtcaaca acgtacacga gtcagttatg      1620
     catctcgggt gggagaaaac tcttgagaaa atgtacgagt tctattggtt cgataaaatg      1680
     tctaagtatg ttcgccaatt tgtggacaac tgtatcactt gtagattatc aaaacctccg      1740
     tctggcaaaa tacaatccga actccatccc attcctaaaa ttgacatccc gtggcatacg      1800
     gttcatgtgg atattacagg taaacttagc ggaaaaagcg accagaagga gtatataatt      1860
     gtgatgatag acgcatttac caaatttgtc tatctctctc atactacgaa gctagacacc      1920
     gatagttgca ttaaggcagt gaggtctgtt atatcattat tcggtgtccc ctcccgactt      1980
     attgctgatc aaggtcgtag ttttgctagt tcagctttcc gtgatttctg ctcagcacag      2040
     aaaatggatt tacatttaat tgccgcaggt gctagtcgtg acaatggcca agtggagcga      2100
     gtcatgagta ctctaaagtc catgctgact gcggttgaaa ctggcccagg atcttggcag      2160
     gattctttat atgagattca gctggccctt aatagcacgc ccaatagagt tactaaagtc      2220
     agtccattag agatacttat tggcagagaa gcaaggccat ttgggcttac acctgttgta      2280
     aaagaacaaa atattgtcga tgttggctta gttagagaaa tagcaaaacg caacatggaa      2340
     aagaatgcca aaattgataa agctagattc gataaaaaca aagccactat tgtaagacac      2400
     aagctaggag accatgtttt acttaaaaat gaagagcgtc accagaccaa attagatcct      2460
     aagtttaaag gtccatttgt agtggccgaa gtattaccag gagatcgata taaactcaaa      2520
     gcattaaata ataaccgaac ttataaatat tctcatgaat ctttgcgatg tatgcctgag      2580
     aagaggatta ccacagtatt tgaagatgaa ggcacagaag atgccagtga tcaagccagt      2640
     gagggctgtg atcttgagaa tgactaaaaa tttgtaaacc tccggaccta ttccaaatgc      2700
     gactttctct acctcatggg tgcccgagtt aagtggttcg ccattttgtt gcagttaagc      2760
     ttaaatttgg taacggttgg tggtgtgagt taactggccg gcttatagac tgcgtcatct      2820
     gggtgccacg tatgttggcc ggattgtcga gttgtaagct gtgagctagg ctaacaaaag      2880
     atggactggc cggtttgaaa aactgtgcgc tagtagaaaa atgtattgaa aatcaagaac      2940
     gttaacgatt tatgtttgaa gaagacaaaa ttatgattgt ttgattgaaa gctgatggtg      3000
     gtccggttct catggcttaa atgtaataaa tgaaatgttt taaatatttg tattggtttg      3060
     atttaaagta ataaagaatg aagaataact ttatattttg aaaaaaaaaa taagcctttg      3120
     atagattctg tttaattatt gagagactgt tagcacacga ggacgtgtga taggtcagga      3180
     aggccg                                                                 3186
//
ID   Transib4    repbase; DNA   ; DRO   ; 2610 BP.
XX
AC   .
XX
DT   24-APR-2001 (Rel. 6.03, Created)
DT   13-JUN-2005 (Rel. 6.03, Last updated, Version 3)
XX
DE   TRANSIB4 is a DNA transposon, a consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; DDE-class;
KW   TRANSIB family; TRANSIB4p transposase; TRANSIB4.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2610
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements in the
RT   Drosophila melanogaster genome.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
RN   [2]
RP   1-2610
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements in the
RT   Drosophila melanogaster genome.";
RL   PLoS Biol 3(6), 181-181 (2005).
XX
RN   [3]
RP   1-2610
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   Pro 3(6), 181-181 (2005).
XX
CC   [3] (Consensus)
XX
CC   Transib4 belongs to the Transib superfamily of DNA transposons.
CC   It has generated 5-bp duplications of the CantG target
CC   sites upon its integration into the genome (it has happened
CC   a few million years ago).
CC   Transib4 has 40-bp terminal inverted repeats.
CC   There are ~10 copies of Transib4 which are ~93% identical to the
CC   consensus sequence.
CC   Transib4 encodes the Transib4p transposase (positions 497-2219).
CC   The transposase is not perfectly recovered since the genome
CC   harbors only a small number of Transib4 copies, which are damaged
CC   by mutations.
CC   Transib4p is 37-44% identical with Transib1p-Transib3p.
CC   There is 60-62% nucleotide identity between Transib4 and
CC   Transib1-Transib3.
CC   The original TRANSIB4 name was replaced by Transib4 [3].
CC   In [3], the correct page number is e181.
CC   Conceptually translated Transib4p transposase:
CC   CFLPLFALFCETFYVVGVYEFSHAVLLDVWSNNKRDADAVNSYILENIEENFETKEQKITISKKVNQFIA
CC   YANKHLRKCNRMLDRFKRNHLLWLASKIVVVIHKPEMTLCKPGRKQLTYEDAGPQPKKKISKLAGCRTRA
CC   FNTTSRTCCFNFRKKNEAGRNGLCIKKKSISSENIHDIKKKIETNHPIKISADNALALLIENGFTKQQYT
CC   NIKALNKQQGCDIFPPYSKVAEAKLKCRPSEHKISEKRPGVSxQDLLDHTAGHILLIQExVFCVHPDPTN
CC   CTFIVSYGFDGSTDQSTYKQRFLSNECIALDQFLFVTTIIPLKLIDEINNRVIWIHSSPQSVRFVGLxKL
CC   SLFIKESAALILKEKQILDAAIKNLRPYSYTSKNQIIAYTADQRSFSNSKIFSSVLNLDYKIIYNFYIIL
CC   ISISCEHTIDAEKFKSLFLSPTIHKILVHGYQIINQFIVPVGVLGENASEARNKLYKSDRKSHARKCSRL
CC   ANITDVFNRAVDSSDPLLSSLCLRDRSKFGKKKLLPKEVIDILQNPDAELYKSSYHSNNKEEEVEVEDEF
CC   NCLNIFLEEEVEE.
XX
SQ   Sequence 2610 BP; 903 A; 454 C; 446 G; 805 T; 2 other;
     cactatgggt aaaaagccgg aaattttggt attaatgtaa ttttttttgt gattgatatt        60
     ttaatgctgc tttcattttt tgattcctaa gtaacaagat agcataaaaa taattttaaa       120
     acatttttac gagttatcgt ttatttttgg cgcgctttca aagtcagctg attcagaggt       180
     gctttgaatt gtgaaaattg gcggaaaaag ttgaacaaat tgcagcgcaa acattgtctt       240
     catagcaaac tttgagttta tttttaatta tggaaaaaac aagtcagagt atgtaaatta       300
     ttcgtgaata cacgttttcc gataattgtg tgtggttgtt gttgaattgt ccaatgtatt       360
     gcttgtgagt attttcaatt gtttactaac aaacgttcta gtgttctgtg gaatattact       420
     tttgtatggc acaacgaatc accaaagtta aagttgtatg tttttaacaa atatatgtgg       480
     aatcaaatgg tattaatgtt ttttgcccct ttttgccctt ttttgcgaaa cattttatgt       540
     tgtaggtgtg tatgagttta gtcatgcagt tctgctggat gtttggagca acaacaaacg       600
     cgatgcagac gctgttaaca gttatatttt ggaaaatata gaagagaact ttgagactaa       660
     agagcaaaag attacaattt caaagaaagt gaaccaattt attgcttatg cgaacaagca       720
     cttaaggaaa tgcaatcgaa tgttggaccg attcaaacga aatcatttat tgtggcttgc       780
     gtctaaaatt gttgtcgtta ttcataagcc agaaatgaca ctatgcaaac ctggccgaaa       840
     acagttaaca tatgaagatg cagggcctca acctaaaaaa aaaattagca aattagctgg       900
     ctgcagaaca agggcattca acaccacttc tcgtacatgc tgcttcaatt tccgcaaaaa       960
     aaacgaagca ggcagaaacg gcctttgtat taaaaaaaaa agcataagca gtgaaaacat      1020
     acatgatata aaaaagaaaa ttgagacaaa tcatcctatt aaaataagtg ctgataatgc      1080
     tttagctctc ttaattgaaa atggatttac aaagcagcaa tatactaata taaaagcgct      1140
     caataagcag caaggatgcg atattttccc tccttattca aaagtagcag aagcaaaatt      1200
     gaaatgcagg ccttccgaac ataaaatttc tgaaaaaagg ccaggagtat cgtngcaaga      1260
     tttgctagat catacagctg gccacatact tttaatacaa gagnaagttt tttgtgttca      1320
     tccagaccca acgaattgta catttattgt gagctatggc ttcgatggat ctacggacca      1380
     aagcacgtac aaacaacgct ttctatcaaa cgaatgtatc gccctagatc aattcctttt      1440
     cgtcactaca attataccgt tgaaactaat agatgaaatc aacaatcgag ttatttggat      1500
     acattcatct ccacaatcgg tgagatttgt cggcctttga aaattgagtt tataaaggaa      1560
     agtgctgccc ttatattgaa ggaaaaacaa attttggatg cggctataaa aaaccttaga      1620
     ccatattcct acacttccaa aaaccaaata atagcatata ctgcagacca gcgttcgttc      1680
     tcgaacagca agatattttc gtccgttttg aatttggact acaaaatcat ttacaatttt      1740
     tatataattt tgatttcaat ttcttgtgag cacacgattg atgcggaaaa atttaaatct      1800
     ctatacctct attcttgtca ccaaccatcc acaaaatatt ggtacatgga tatcaaatta      1860
     taaaccaatt tattgttcct gttggtgtcc ttggagaaaa cgcgtcagaa gcgcgcaaca      1920
     aactttacaa gagcgataga aaatctcacg ccaggaaatg tagccgacta gcaaacatta      1980
     cagatgtttt caacagagca gtggattcat ctgatccttt gctttcaagt ctttgtttaa      2040
     gagatcgaag taagtttgga aaaaagaaac tcctcccaaa agaagtaatc gatattcttc      2100
     aaaatccgga tgcagaactt tataaatcaa gttatcattc taataataaa gaagaagaag      2160
     tggaagtgga agacgaattc aattgcctta atatattttt agaggaggaa gttgaagaat      2220
     gacaatcaac ttaataaaat ataaaaaaat ttattgactt ttatctcata ataatggttt      2280
     ttgcatcttg tgtcctcact tcgctcccac gccagtcccc cagggaagac acctccggat      2340
     ccaccggttg aaccacagac atattaacac ccacacctcc ttcgccaccc atccatctcc      2400
     ctttaaaacc gctttcattt gtatataaat acatttttca ctttattttc aaggattgtt      2460
     tttgtgggcg gagatgaagg cgtggtcaga tcaaaaaata aacaaaatcc gaaattctat      2520
     ttaaatccta attataaata taaaaaaaat caagtcgcta tctttaaaat tgtaattaat      2580
     accaaaattt ccggcttttt acccatagtg                                       2610
//
ID   R1-2_DM     repbase; DNA   ; DRO   ; 3216 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.1, Created)
DT   11-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   R1-2_DM is a non-LTR retrotransposon - a partial consensus.
XX
KW   Non-LTR retrotransposon; ORF1; ORF2; R1 clade; R1-2_DM;
KW   endonuclease; reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3216
RA   Kapitonov V.V., Jurka J.;
RT   "R1-2_DM, a family of R1-like non-LTR retrotransposons from D.
RT   melanogaster.";
RL   Repbase Reports 2(10), 27-27 (2002).
XX
CC   [1] (Consensus)
XX
CC   R1-2_DM belongs to the R1 clade of non-LTR retrotransposons.
CC   R1-2_DM is a separate family. Members of this family are ~92%
CC   identical to the R1-2_DM consensus sequence. Therefore,
CC   this family was active a few million years ago. R1-2_DM is only
CC   70%
CC   identical to R1_DM. The sequence is incomplete, its several
CC   hundred
CC   bp long termini are not reconstructed yet.
CC   There are ~15 copies of R1-2_DM present in the sequenced portion
CC   of
CC   the D. melanogaster genome.
CC   The R1-2_DM consensus sequence includes two open reading frames
CC   that
CC   encode a C-terminal portion of R1-2_DM-ORF1p (positions 1-716)
CC   and N-terminal portion of R1-2_DM-ORF2p (positions 719-3216)
CC   FW_DM-ORF2p (positions 1256-3832). These proteins are most close
CC   to
CC   the R1-like DNA/RNA-binding and endonuclease/reverse
CC   transcriptase
CC   proteins, respectively.
CC   R1-2_DM-ORF2p:
CC   MFSFLQANCGRGRAPTIELxVRLRDSGHLFALVQEPYVDL
CC   AGRITGVPSGMRVFSDRRGKAAVYVDSTDSICMPIEPLVTEFGVCVSVTGSFGSIFLCSVYCQFNTGLEQ
CC   YLGYLDAVLLLASRTPVILGLDANAVSPMWFSKLPERAQGSANYLRGELLSDWIQGCRAGVLNMPCDAFT
CC   FETPYARSDIDVTLTNDAASTCATYDWRVDEWDLSDHNIINVVVTRDPPNTVESFAPVPSWNFSAARWRP
CC   FEDEVTRLASELPDEFADTPLDDQVSAVRSLVHSVCDQVLGRRRPKTARKIVWWTAELSSKRQEVRRLRR
CC   RLQTARARASHDAEQLVSQLREISDQYKELILKYKEDNWRRLVGENKDDPWGQVFRICRGRKRTTELGCL
CC   RxGGRQYVTWHDCAGVLLRTFFPFSSFRHPLSFLKRFHHRLSSEVDACVARLKSRRSPGMDGITAVIFKA
CC   VWRAIPEHITAFYSRCIRSGYLPSKWKRTIAVALLKGSDKDRSDPASYRGICPLLFVFGKVLEGIMVNRL
CC   KDVLPDGSRWQFGFREGRCVEDAWRHVVSTVAANQAQYMLGIFVDFKGAFDHVEWDVVMRRLIDSGCREA
CC   SLWRSFFSGRSASLVSRYGEVTVPVTRGCPQGSISGPFIWNLMMDSLLQRLEPLRGFSALADDLLLFVEG
CC   TRIVLESKGEQLMSVVGAWEVGVAVLTSKTALLLGHFAQSRHTTVRFAGASLPYVDKYRYLGVTVVERLN
CC   VLPHIKSLRDRLTGVVQALARVLCVDWGLSPRARRTIYAGLMVPCALFGASVWYDGPSSAMRHLVSCQRR
CC   ILLGCLPVCRTVSTVAMQVLxG.
XX
SQ   Sequence 3216 BP; 692 A; 827 C; 943 G; 751 T; 3 other;
     cttgctcggc ggtagtgatg tgcgacgacc cgagcatacc tgggaagcag agtgctgagc        60
     gggtccgcaa ggaggtcgcc cctgccctcg gtgtccgtgt acacgaggtg cgtgagttga       120
     agtgcggtgg agccgtcatc cgcacaccat cggtgagcga gatgaagaag gtcgtcgcga       180
     acaagaagct tgccgaggtt ggtctcaaag ttcagccgaa gaagagccaa cgacccaaag       240
     tccaggtgtt cgacgtcgac agtggaatac agcctgatgg aggaattgta cgtcaacaat       300
     tcaaggaaga gttctcccca gccgctttca tgaaagaaat gcacctcaac acgaaaccgt       360
     ggtcagtcac cgatggcgaa agagctaatc tgacgcttga ggttgacgaa aaggcgctga       420
     acgtccttga gcagaccgga cgggtctata tcaagtggtt cagttaccgt tgccggtcgc       480
     tcgtccacac ctatgcttgc cataggtgcc ttggatttga ccacaaagtt tcccagtgca       540
     gggtcaagga aaccatttgt ccacaatgtg gacaagctgg ccacacagca cccagatgca       600
     cgaatccggt ggactgccgg aattgtcgtt ttaagggcca cccttcgagg cattcaatgc       660
     tgtccttcac gtgccccatc tacggtgcgg tgcttgcgag ggtgaacgct agacattaat       720
     gtttagcttc cttcaggcaa attgtggccg tggccgagct cctaccatcg agctcgsagt       780
     ccgcttgcgc gactctggcc acttgttcgc attggtgcag gagccttatg tggacctcgc       840
     tggacgaatc acgggagtcc catccgggat gcgtgtgttt tcggacaggc gtggaaaggc       900
     tgccgtctac gtggacagca cggattccat ctgcatgccg atagagccgc ttgtcaccga       960
     gtttggagta tgcgtgagcg ttactggaag ttttggctca atcttcctat gctccgtgta      1020
     ctgccaattc aacaccggac tcgaacagta cctcgggtac ttggatgcgg tgctgctgct      1080
     agccagccgc acgcctgtca tccttggtct cgacgcgaac gcagtatccc ccatgtggtt      1140
     tagtaaactc cctgagcgtg ctcagggatc agctaactac ttacggggtg agctgctgtc      1200
     tgactggatt caaggatgtc gagccggagt gctgaatatg ccgtgtgacg cgttcacatt      1260
     cgagactccc tacgcacgta gtgatatcga tgtgacactc accaacgatg cagcgtctac      1320
     gtgcgctacg tacgactgga gagtggatga atgggatctt agtgatcaca acattatcaa      1380
     cgttgtggtt acgcgagacc caccaaacac agttgagagc tttgctcctg tgccatcctg      1440
     gaacttctcc gctgcacgct ggcgcccatt tgaggatgag gtgacaagac tggcttcgga      1500
     actcccggac gaattcgccg acacgccgtt ggatgaccag gtctctgcag tgcgctcgct      1560
     cgtgcactct gtgtgcgatc aagtgctggg acgcagacga cccaagaccg caaggaagat      1620
     agtttggtgg actgccgaac tttcttctaa acgccaagag gtcaggagac tgaggcggcg      1680
     gcttcagacc gctcgtgcgc gcgcaagcca cgatgccgag caacttgtct ctcagttgag      1740
     ggaaatctca gatcagtaca aggagctcat tctgaagtac aaagaggata actggaggcg      1800
     cttagtggga gagaacaagg acgatccatg ggggcaagtc tttaggattt gccgtggccg      1860
     caaaaggaca accgaactcg gttgtcttcg ctnaggtggc aggcagtacg taacctggca      1920
     cgactgcgcg ggtgttcttc tccggacctt ttttccattc tccagttttc ggcacccact      1980
     gtcattcctg aagagattcc accaccgctt gtcctctgag gtagacgctt gtgtcgcaag      2040
     gttgaagagc agacgctctc ccggcatgga cggcatcacc gcggtgatat tcaaggcggt      2100
     gtggcgtgcc attcccgagc acatcacagc gttttactcc cgctgtatca gaagtggata      2160
     ccttccctct aagtggaagc gcacaattgc agtggcacta ctcaaagggt cggataagga      2220
     caggagtgat cctgcttctt accgcggtat ctgtccgttg ttgtttgttt tcggcaaagt      2280
     gctagagggg atcatggtga accgattgaa ggacgttcta cccgatggaa gcagatggca      2340
     atttggattc cgagaaggac gctgcgttga ggatgcttgg agacacgtcg tgagcactgt      2400
     tgctgccaac caggcacaat atatgctcgg aatcttcgtg gacttcaaag gagccttcga      2460
     ccacgtggag tgggatgtcg tgatgagacg actcatcgac tccggctgcc gagaagccag      2520
     cttgtggaga agcttcttct ctggcaggag tgcaagttta gtcagcaggt atggtgaagt      2580
     gactgttccg gtaacacgag gttgccctca gggatccatc agcggtccat ttatttggaa      2640
     ccttatgatg gactcacttc tccagcgtct ggagccactg cgtggtttca gcgcgcttgc      2700
     agacgacttg ttgcttttcg ttgagggtac ccgaatcgta ctggagtcga aaggcgaaca      2760
     gctcatgtcc gttgttggag catgggaagt cggcgttgcc gtcctcacca gcaagacggc      2820
     gctgctgctg gggcattttg cccagagtag gcacactaca gtacggtttg caggagcaag      2880
     cctgccgtat gttgataaat accggtacct tggcgttaca gttgtcgagc ggttaaatgt      2940
     tcttccgcat atcaagtcgc tacgtgatcg gctgactgga gttgtgcagg cattggcacg      3000
     cgttctttgt gtggactggg gcctcagtcc acgcgccagg cggacaatat atgccggact      3060
     catggtgcca tgtgccttgt ttggtgcatc ggtctggtat gatggaccca gctctgccat      3120
     gaggcatctg gtctcctgcc agaggcgaat cctgcttgga tgcctaccgg tatgccgtac      3180
     agtgtccact gtggcaatgc aggtgctcgs tggcgc                                3216
//
ID   GYPSY12_I   repbase; DNA   ; DRO   ; 5546 BP.
XX
AC   AE003789;
XX
DT   13-DEC-2002 (Rel. 7.11, Created)
DT   13-DEC-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   GYPSY12_I is an internal portion of the GYPSY12 endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; GYPSY12_I; GYPSY12_LTR; endogenous retrovirus;
KW   gag; pol.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-5546
RA   Kapitonov V.V., Jurka J.;
RT   "GYPSY12, a family of Gypsy-like endogenous retroviruses in
RT   drosophila.";
RL   Repbase Reports 2(11), 9-8 (2002).
XX
DR   Genbank; AE003789; Positions   46854   41309.
XX
CC   GYPSY12_I is an internal portion of the GYPSY12 endogenous
CC   retrovirus.
CC   Its long terminal repeat is listed in Repbase as GYPSY12_LTR.
CC   GYPSY12_I is flanked by 1% divergent LTRs. Therefore, the
CC   age of GYPSY12 can be estimated as ~0.3 Myr.
CC   tRNA-derived PBS starts at position 35 (there are several
CC   GYPSY12-like subfamilies that have the same feature).
CC   GYPSY12, OSVALDO and ULYSSES retroviruses from D. buzzatii and
CC   D. virilis, respectively, form a distinctive group of GYPSY-like
CC   retroviruses. GAG and POL encoded by GYPSY12_I are slightly
CC   damaged by several mutations. We recovered both proteins
CC   conceptually,
CC   based on alignment with known proteins. GYPSY12-GAGp shares
CC   common structural motifs with GAGs encoded by HIVs. GYPSY12-POLp
CC   is composed of protease, reverse transcriptase and endonuclease.
CC   GYPSY12-GAGp (positions 805-2217):
CC   MGLDRSPTRKSPSVSNPVCKLCAAEISTQDLYVTTCHHEFYRECIGNHFKKSEICSRCKLTCRPPAEATE
CC   RVGRETRSKTKNRRNSRRGSFDISQRCGEKLAVKLKIAATVDGGPSTSASGANANEASSSAVSANAALLA
CC   MERRLLATLSEKMADLVQNAITSSMQRIMPTPSPAVVVTASEMSADHPNAYERQYLASPNPVPSPRSASS
CC   DLFDRPDKVVHILNGWKIKYSGVGVSVDNFIYRVEAVTRQTLNGNFNLLCRNISVLFEGKANDFFWRYHK
CC   FDRVATMGTERFCTALRLQFRQSRDDGDIEELIRNTKQKPNETFDSFYDTVSELVDQLEQPWTANKLVRV
CC   LRNNLRPEIRHEILNLDVRTVSELREICKRREAFLADVRRCSSYAKDTPFKREISEVCHESEDEVRSTYE
CC   AENDIESFSLVCWNCRIEGHRYQECIAERRVFCYGCGAANTYKPSCRKCSKNFKVGMSKLPVKPKTSNAA
CC   RNQSTMTDQ
CC   GYPSY12-POLp (positions 2404-5374):
CC   KKCKASLDYISSIPTGPRDPRPFLPMRLLNCLVYGLLDSGASISCIGGGVVQAAMENEKFKSLIGEAATA
CC   DGNSQRIVGLLKIEVEYGDIKKLLKLYVVPSLKQDLYLGIDFWKLYDLLPANLKIAEILSPEPNQQTVVD
CC   QHELCEGDKAKLANVINCFPSFSQEGLGKTNLVSHSIDVGTARPVKQRHFPVSPAVEKAMYAEIDRMLRL
CC   GVIGESESAWSSPIVMVTKPGKVRICLECRKVNSFTEMDAYPLPQINGILSRLPRAEYISSLDLKDAYWQ
CC   VPLDPKSRDKTAFTVPGRPLYQFKVMPFGLCNATSTMSRLMDKVVPAHLRNEVFIYLDDLLIVSSCFESH
CC   LNVLRELALQIKRAGLTLNVAKSHFCMRRVRYLGHIIGDGGIRTDPEKVSAITDFPLPKSLKSLRSFMGL
CC   CGWYRKFVANFATLSAPLTDLMTTKRKFLLTKEAIEAFSKLKECLSKAPVLCSPDFAKPFAIHCDASKSG
CC   VGAVLVQVSEEGDERPIAFVSKKLNKAQRNYTVTEQECLAAIVALKNFRAYVEGLPFKIITDHASLKWLM
CC   SNHDLNSRLARWALALQRFKFEIEHRKGSLNVVPDTLSRVNEEIVAAMDLQEDLIVDFDSEFFQSGDYVK
CC   LVETVKENTSNFSDLKVESGFLYRKAEHLTGERMHDEYAWKLWVPKELVSKILARAHDSPLAAHGGIHKT
CC   LERIRRYYFWPGLVSDVRAYISACEVCKSTKSQNFTLRPPLGKAPESQRFFQRLFIDFLGPYPRSRSGNI
CC   GIFIVLDHFSKYVFLKPVKKIDSSVVIKYLEDELFMTFGVPEVILSDNGSQFRARTFQRLIRYGVKHTLT
CC   AVHSPQANASERVNRSVIAAIRAYLRLDQKDWDEFLSRICCALRSAVHSSIGTSPYYMVFGQHMITSGST
CC   YSLIRRLNLLDDRSLKFDRHESFEIMRKQAVDQMRNKHNENEKRCNIRSRVVSFVEGQEVYREISSQAVS
CC   KPVTTPSLDRRS.
XX
SQ   Sequence 5546 BP; 1583 A; 1135 C; 1335 G; 1493 T; 0 other;
     gtttagttaa gtataataat aaataagata aagtggcgcc caacgtgggg ccttagtgag        60
     ttattttaaa attcattaag actcgcgaat taatatcttc aatcctttct ttacattttc       120
     tgtctcactt ccaaaaattt ttgtgtttag aattggttgc ggagtacacg tcaagtccat       180
     actaatattg ctaactggcc ataactaaga ctgatcacaa aaattttcct aagtgtagca       240
     aaaggaaatg tggattttgc tgaggaaaac agagtaacag taacttcggt caggtttctg       300
     tcccggtttt atctacttcc ttgagctaac taaatgctat tctaaaaaaa agatcattaa       360
     cgcaacatga cggaaaatct ttgcgttact taagagaaat gcaagatcct catatagttg       420
     acgattttcc tctttttact attcgtttta aataagatag agtttcctat aagttggaat       480
     attcgtgcca aggaaaaggc acgatccagg acttcactgt tacacctact ggtggtgttg       540
     aaatttagtc taatatggaa tatcttattt taacgaaact cctatgcctt cgtgagaatt       600
     ttgagtctaa tatagaatat cttattttaa cgaaactcct atgccttcgt gagaattttg       660
     agccaaaata atagacagcc ctacgaaagg agaacatcaa gttcagtttt attatctttt       720
     cgcgccttat cgttgatatt tttacgtata agtttattct atttttgctc gccatttttg       780
     aaccggtaat ttttcgcaag tatgatgggg ttagaccgat caccaactag gaaatctcct       840
     agtgtctcaa accctgtttg taaattatgt gcagccgaga tcagcacaca agatttgtat       900
     gtgacaacct gtcaccatga attttacagg gagtgcattg gcaatcattt taaaaaaagt       960
     gagatctgtt cgaggtgcaa actaacctgt aggcctccag ccgaagcgac cgaaagggta      1020
     gggagagaaa ctcgcagtaa aactaaaaat cgccgcaaca gtagacgggg gtccttcgac      1080
     atcagccagc ggtgctaacg caaatgaagc tagttcaagc gctgtaagtg ctaatgcagc      1140
     tttgttagcc atggagcgta ggcttctagc aacgttgtca gagaagatgg ctgatttagt      1200
     acaaaacgct atcacctcaa gcatgcagcg aataatgccc actccgagtc cagctgtagt      1260
     cgttacagcc agtgaaatgt ccgctgatca cccaaatgca tatgagaggc agtatttagc      1320
     atcgccaaat ccagttcctt ctccacgaag cgcttcttcc gatttgtttg atcggccaga      1380
     taaagtcgtc cacatattaa atggttggaa aataaaatat tctggtgtag gagtgtcagt      1440
     ggacaacttt atatacagag tcgaagcggt tacaagacag acgttgaatg gaaatttcaa      1500
     cttgttatgt agaaacataa gtgtattgtt tgaaggcaag gcgaacgact tcttttggcg      1560
     ctatcataaa gcggtgaaat tctgtgagag aggttttgca cagccctacg actgcaattt      1620
     cgacagagtc gcgacgatgg ggacatagag gaactgatca ggaataccaa acaaaaacca      1680
     aatgaaactt ttgatagttt ctacgacacg gtatccgagt tagtcgacca gctagaacag      1740
     ccttggacag ccaacaaact tgtccgcgtg ctaagaaata atcttcgtcc tgagatccgc      1800
     catgaaattc taaacttaga tgtccgaacg gtgtcagagt tgagagagat ttgtaagcga      1860
     agggaggcat tcctggctga cgtcagaaga tgcagtagct acgcgaaaga tactccgttt      1920
     aaacgcgaga tctccgaggt ctgtcacgag agtgaagatg aggtgaggtc aacatacgaa      1980
     gctgagaacg acatcgaatc tttttcccta gtgtgttgga attgccgaat cgaaggacac      2040
     cgataccaag aatgtatagc cgaaagacga gtgttttgtt acgggtgtgg tgcagcaaac      2100
     acctacaaac caagttgtag aaaatgttca aaaaacttca aggtcggcat gtcgaagttg      2160
     ccagtcaaac cgaagacttc aaatgccgca aggaatcagt cgacaatgac cgatcagtag      2220
     agaacaccga taaaagtgtg tctctacccc tccctgacgt accaattaaa ccggctatta      2280
     gactgcttca cagcaaaatt tcggaattac gaaacgtctg catttcggat tccagaaaaa      2340
     ctgcaatttt taaacggaaa tctcgtagtg ctcgacgctt gaaattgttc tggaagaacg      2400
     taaaaaaaat gtaaagccag tttggattac atcagttcta ttccaacagg acctcgagac      2460
     cctcgaccgt tcttaccgat gcgcttattg aattgcctgg tctacggatt gttggattca      2520
     ggcgcatcga ttagttgtat tggaggaggg gtagtgcaag ctgcgatgga aaacgagaag      2580
     tttaagtcgt taataggaga agctgcgaca gcagacggga attctcaacg tatagtagga      2640
     ctgctaaaaa tagaagtgga atacggtgac atcaaaaagc ttttgaagtt gtatgtcgtt      2700
     ccatcgttaa aacaggatct ctatttggga attgactttt ggaaactata tgacctcctt      2760
     cctgctaatt tgaaaatagc tgagatattg tcgcctgagc ccaaccagca aacggtggtg      2820
     gatcagcacg aattatgtga aggtgacaaa gccaagttgg ccaatgtaat caactgtttt      2880
     ccttccttta gccaggaagg gttaggtaag acgaacttgg tctctcattc gatcgatgtg      2940
     ggcaccgcta ggcctgtgaa gcaacggcat ttccctgtct cccccgccgt cgaaaaagca      3000
     atgtatgcgg aaatcgaccg gatgttacgc ttaggggtga taggggagtc tgagagtgct      3060
     tggtcttcgc cgatcgtgat ggtgactaaa ccaggcaaag tcagaatttg tcttgaatgt      3120
     cgcaaggtta atagttttac ggagatggat gcatatccgt tgccccaaat aaacgggata      3180
     ctgagtcgtt tgccgagagc tgagtacata tcgagcctag atctgaagga tgcatattgg      3240
     caggtccctt tggatcctaa gtctcgggac aaaacagctt ttaccgtccc gggtagaccg      3300
     ttatatcagt ttaaagtcat gcctttcggg ttgtgtaacg ccacgagcac tatgtcacgg      3360
     ttaatggaca aagtagtgcc ggctcatttg agaaacgagg tttttatcta tttagacgac      3420
     ctactaatag tatcttcttg ttttgagagc catttgaatg tactgaggga gttagccctg      3480
     cagataaagc gcgcgggctt aacgctaaac gtcgccaaaa gtcacttttg tatgcgacga      3540
     gtacgctatt tgggccacat tatcggagac ggtggaattc gcacagaccc tgaaaaggtg      3600
     tccgcgatta ccgatttccc attgcctaaa agtttgaaaa gcttgcgcag tttcatggga      3660
     ttgtgcggat ggtacaggaa atttgtcgca aacttcgcga cactttctgc accattgact      3720
     gacttgatga ccacgaagcg gaagtttcta ctaacgaagg aggcaattga agcgttcagc      3780
     aagctcaaag agtgtcttag caaagctcca gtcctgtgta gtccggattt tgcgaagccg      3840
     tttgccatac attgcgacgc tagcaagtca ggcgtgggtg ccgtgctggt acaagtgtct      3900
     gaagaaggtg acgagcgtcc tatcgctttc gtttcgaaga agctgaacaa agctcaacga      3960
     aattataccg tcacagagca ggagtgtttg gccgcaatag tagctctcaa aaacttcaga      4020
     gcatacgtgg aaggactccc ttttaaaata ataaccgacc atgcttcgct caagtggcta      4080
     atgtccaatc acgatctaaa ttcacgactg gcgcgatggg cattagcttt gcagagattc      4140
     aagttcgaga ttgaacaccg taagggttct ttaaatgtcg tcccggatac attgtctcgt      4200
     gttaacgagg agattgtagc cgcgatggac ttgcaagaag acttaattgt tgatttcgat      4260
     tctgaatttt tccagtccgg tgactacgta aagttggtag agaccgtaaa ggaaaatacc      4320
     tcgaattttt ctgatctcaa ggtggagagc gggtttttat atagaaaagc cgagcacctg      4380
     actggagaac gaatgcatga cgaatacgcc tggaaacttt gggtccccaa agaattggta      4440
     tcgaagattc tggctcgcgc gcacgatagt ccgttagctg cgcatggtgg catacacaaa      4500
     accttggaaa gaatacggcg atattacttc tggcccggtc tcgtttcgga cgtgagggct      4560
     tatattagtg cgtgtgaggt ttgtaagagt acaaaatctc aaaatttcac tctcagacca      4620
     ccattgggaa aagcgcctga gtctcagcga ttcttccagc gtttgttcat tgattttctc      4680
     ggaccgtatc ctaggtcaag gagcggcaac ataggaatct ttattgttct ggatcatttt      4740
     tcgaaatacg tgttcttgaa acccgtaaag aagattgatt ccagcgtcgt cataaagtat      4800
     ctggaagacg agttgttcat gacgttcgga gtgcccgaag tgatactgtc tgacaatggt      4860
     tcccaatttc gagctaggac gttccagaga cttatacggc gttaagcaca cgctgaccgc      4920
     tgtccactcg cctcaggcaa atgcttctga gcgcgtgaac agatcagtaa ttgctgcaat      4980
     cagggcctat ctgcgtctcg accagaaaga ctgggacgag tttctcagcc gaatatgttg      5040
     tgcgttgagg tcggcggtgc attctagcat tggtaccagt ccctattata tggtatttgg      5100
     gcagcacatg atcacgtcag ggtcgacgta ttcgttgatc agacgcctaa atctcctgga      5160
     cgatcgttct ctaaagttcg accggcacga atctttcgag ataatgcgga agcaagctgt      5220
     tgatcagatg agaaacaagc acaacgagaa cgagaagcgg tgtaatatcc gttctcgtgt      5280
     ggtatcgttt gtcgaagggc aagaagttta tcgcgaaatt tcaagccaag ctgtttccaa      5340
     accggttaca acgccaagtt tggaccgacg ttcgtgaagt ctcgagttcg gaagaagatc      5400
     ggcaacgcgt attacgagct ggaggatctc caaggacgag ttgtgggtac ctatcatgcc      5460
     aaggacattc ggcagtaagg tgcttccagt cggtctcagc ctagtgtgtc tatgagtacc      5520
     ctagtctgag tgtagcgggg gggttt                                           5546
//
ID   GYPSY5_I    repbase; DNA   ; DRO   ; 6509 BP.
XX
AC   AE003485;
XX
DT   27-SEP-2000 (Rel. 5.08, Created)
DT   27-SEP-2000 (Rel. 5.08, Last updated, Version 1)
XX
DE   GYPSY5_I is an internal portion of GYPSY5 endogenous retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; GYPSY5_I; GYPSY5_LTR; endogenous retrovirus;
KW   env; gag; pol.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6509
RA   Kapitonov V.V., Jurka J.;
RT   "GYPSY5_I.";
RL   Direct Submission to Repbase Update (SEP-2000).
XX
DR   GenBank; AE003485; Positions  115953  109445.
XX
CC   GYPSY5_I is an internal portion of GYPSY5 endogenous retrovirus.
CC   GYPSY5's long terminal repeat LTR is listed in Repbase Update as
CC   GYPSY5_LTR. Presumably, GYPSY5 can be still an active retrovirus
CC   since it is flanked by 100% identical LTRs. Target site
CC   duplication is 4 bp-long (CCAG).
CC   GYPSY5_I internal sequence encodes
CC   gag:
CC   MSKLAKVKKLIPATRSSTRLSASLSDVREDQVALPPRIRPSSSSAPSTMTSSSETSNFSSPPPPISPQDI
CC   CLSLKIPDGIRDLTPYDGDPTTLNEFINNIEEILLLIRGTDKTPYGQFLLRAIKNKIEGKAKALLLSLGI
CC   GLNWDDIKEALIGKFADKRSEETLNFELHGLVHKRLPLQEFYERILDIQATYGRTMENMGIETAALNLKK
CC   ESFEKTCLYTFIHGIKGPLGSTVRAFRPRSLQEAYDVAIKERDIFMRENWSRQTQSSRSNNYNYNGRDYR
CC   RNDEHRVEKYNKKSEFDRNIRSRDQRGSYSKPRDNDRNFNKMRAIMPKEEDRKRYDRDNNYSRNHGNPGQ
CC   QRQTLNNIETAGVQELHNIDDKNFQLKASSDRRDT
CC   pol:
CC   LINFGPTSPLKFLVDTGATSSFINPELIEEHNQQTLNTPILITTALGSHKVNKIAKIKLFTKHNCNDTFP
CC   LLLFKFHNYFDGLIGMNTLNKILGVIDIPSKILSTPKFNFELLQQVKQKAELFNIEEASKILVMLPVTIK
CC   EGTFLFEDQKVSGNLFITGGLYTAHNYYSCMEVVNYSKKQEKLYLETPIEVNHFNTDEFYIVNDIKDYGT
CC   INSEKEKEKFSTLRLELLNSEETTAFKKLCKQFPNIFYKEGDKLTFTNRVKHSIKTTDEIPVHKRPFRYS
CC   PAEKTEITDQINKLLEQDIIRHSHSPWSAPVFLVPKKLDASNKKKWRLVVDFRQLNDKTIKDRYPMPNIN
CC   EILDKLGRAQYFSALDLASGYHQIEVEPKDRSKTAFSAVGGHFEFIRMPFGLSNAPATFQRVMDNVLAEF
CC   NGKFCLIYLDDIIVFSTSLQEHINHLSSIFKKLTLANLKLQPDKSEFLKKELEYLGHIVTEKGVKPNPKK
CC   IETIKAFPMPKTRKEIKSFLGLLGYYRRFIRDFAKITKPLTQQLKGKSDVTIDDNYIKTFEFCKTLLCND
CC   PILQYPDFTKSFILTTDASNVAIGAVLSQGTVGNDRPIAYASRTLSESETHYATIKKELLAIVWAVKYFR
CC   PYLFGNKFLLVTDHKPLVWLKNLKEPNSMLVRWKLQLLEYDCEVIYKKGSQNVVADALSRIVVELNTNEA
CC   RPITSDTEILTSNRPINEFAIQIILKIADCANDLLETPFKNKLRRIISRPLFDDQTMIDVLKTALRSNKT
CC   HAIYTTDTIFESVQKIYAAFFAPSKSYKIIRCTTYLDELRTPEEQVEYISDYHIKNNHRGIDETVSHIKR
CC   QIYFPCLKERVSQLINKCDICQTLKYDRQPQKPIFQLTETPNKPLDIVHIDLYSINNKTILTIIDKFSKF
CC   AEGYTIPSRDSINITKHMMFFFKTHGIPKTIVCDQGPEFAGIIFKELCNQYNITLHVTSFQQSSSNAPVE
CC   RLHSSLTEIYRIIFEKKKALKLNLDHDCILTETFITYNNAIHSSTKLTPYEVFTGRTHIFEQNYKAVSQQ
CC   DYMRELESYKNNLYVEVKEEFESQKLNKILKLNEDRVLPIAVQEGDTVFRKENRRNKLTPRFTQHKVADD
CC   NGVTFTTNKRQKIHKSKIKKRIRQNSR
CC   env:
CC   MTAAQLLHVQHVKENTPLAEIKLGEARTIKTYSSVAHVIELTELKNNLNKLESSLQNLQDEDSN
CC   DSITPIQRKIDQAREKIYSLTPNRREKRGLIDGLGNVIKKVTGNMDAEDAAKIETKFKQVFENE
CC   ENINKNLGQQISYNNDIIVNFNNMSDHFYKEQEKIERYINNFKNGISKELIVEDKKIRILQILN
CC   IINNNIDILQNHIHDIAESILLAKFKIIPNFILPIQELKDIAQIFKLQNFSINSEEHIYRLLNI
CC   EIESKKTKIIFHIKIPIFDKYTYTLSHLIKLPINGTNFLTLPKYILYDDKFNYMLSFQEKCSRI
CC   HGTYICDPGTAESNMANRECVKQVLQGMNPVCEAKIINTDEAVVEPEQQWIVIISKNQLRAEPS
CC   CAEPFTIEGTTDYQSHKLFHIYRRYQIR
CC   GYPSY5 belongs to the same group of GYPSY-like retroviruses
CC   together
CC   with ZAM, ACCORD, TIRANT and QUASIMODO retroviruses.
XX
SQ   Sequence 6509 BP; 2542 A; 1213 C; 1074 G; 1680 T; 0 other;
     ggcgcagtcg gaaactggac ctgatgcagc tccttttcat cacaattatt caacacgaat        60
     ccatcgttca tcatctgcaa acaaaaaata ttcaacacac aattaattaa gtatacataa       120
     aaacacacaa ttaattaagt atacataaaa aacacacaat taattaagtt cacgtacaca       180
     gatatacact attaattaaa tacatacact taattttttt ttttttttta cacaattaca       240
     cagaattaag aattaaagga tttctctaaa agagtaaatg tctaaacttg ctaaagtaaa       300
     gaagcttatt ccggcgacta gaagtagtac tcgtttgagt gcgagcttat cagacgttag       360
     ggaagaccag gttgccctac cacccagaat tagaccttct tcgagtagtg caccaagcac       420
     aatgactagt tcgtcagaga caagtaactt ttcttcccca ccccctccaa tttcccctca       480
     ggacatttgc ctatccctaa aaattccgga tggcattcgc gaccttactc cctatgatgg       540
     agatccaact accctaaacg aatttataaa taatatcgag gaaattcttc ttctcattag       600
     aggcacggat aaaactccgt atggtcagtt cttgttaaga gcaataaaaa acaagataga       660
     aggtaaagca aaggcgttat tattatcatt aggcataggc ttaaactggg atgacatcaa       720
     agaagcatta atagggaaat tcgctgacaa aagaagcgaa gaaactctaa actttgaact       780
     tcacggactt gttcacaaga gattgccact gcaggaattt tacgaacgaa ttttagacat       840
     ccaagcaact tacggtagaa ccatggaaaa catgggaata gaaacagcag cactaaatct       900
     taaaaaggaa tcttttgaaa aaacatgctt gtatacgttt atacacggca ttaaaggccc       960
     attggggtct actgtcagag catttagacc taggagtctc caagaagcct atgatgtggc      1020
     aattaaggaa agggatattt ttatgagaga aaattggtct agacaaacac agagttcgag      1080
     atcaaacaat tacaattata atgggagaga ttatcgtaga aatgacgaac atcgggttga      1140
     gaaatataat aagaaatcgg agttcgaccg aaacatcaga tctagggatc aaagaggaag      1200
     ttattcaaag cccagagaca acgacagaaa ttttaacaaa atgagggcta ttatgccaaa      1260
     agaagaggac agaaaacgct atgacagaga caataattac tcacgaaatc acggaaatcc      1320
     gggacagcaa agacagaccc ttaacaatat tgagacagca ggtgtacagg agttacataa      1380
     tattgatgat aaaaattttc aattaaaagc ctcgtcggac agacgggata cttagaaaaa      1440
     tttaaagttg gaggttcctt attgtacatt ttaattaact tcggtccaac cagtccacta      1500
     aaatttctag tggacacagg tgccacttct tccttcatta atccagaact tattgaggaa      1560
     cataaccaac aaaccctaaa tacaccaatc ttaatcacaa cagcactagg ctctcataaa      1620
     gtaaacaaga tagccaaaat aaaattattt actaaacaca actgtaacga tacctttccg      1680
     ttacttctct tcaaatttca taattatttt gacggtctta taggcatgaa cacgttgaat      1740
     aaaattttag gagtaataga tataccaagt aaaatcttat caacacccaa attcaatttt      1800
     gaattactgc agcaagtaaa acaaaaagct gaattattta acatagaaga agcatccaag      1860
     atattggtaa tgctacccgt cacaattaag gagggtacat ttttatttga agaccaaaag      1920
     gtttcaggaa atttgtttat taccggaggc ctgtacacgg cccacaacta ttacagttgt      1980
     atggaggtgg taaactattc caagaagcaa gaaaaattat acctagaaac accaatagag      2040
     gtaaatcact ttaacacgga cgaattctat atagtaaatg atattaaaga ctatggtacg      2100
     ataaactccg aaaaggaaaa agaaaagttc agtaccctaa gattagaact tttaaattca      2160
     gaagaaacaa cggcgttcaa aaaattatgc aaacaatttc ctaatatatt ctacaaagaa      2220
     ggagacaaat taacattcac taatagagtc aaacatagca ttaaaaccac tgacgaaata      2280
     ccagtacaca aaagaccttt cagatacagt cctgcagaaa aaacagaaat aaccgaccaa      2340
     attaacaaac tcctagagca ggacataatt aggcacagcc attcaccttg gagtgctcca      2400
     gtttttctgg tcccaaagaa attggacgct tcaaataaga agaaatggag actggttgta      2460
     gatttcagac aattaaatga caagacgatc aaagatagat acccaatgcc caacatcaat      2520
     gaaattctag acaaactagg gagagctcag tatttttcgg ccctagatct agcaagtggt      2580
     taccaccaaa ttgaagtgga gcctaaagat agatcgaaaa cagccttttc cgcagtaggt      2640
     ggtcatttcg aattcatccg aatgccattc ggcttatcta atgcacccgc aaccttccaa      2700
     agggtgatgg ataatgtctt ggcagaattc aatggcaaat tttgtctgat ttatctcgac      2760
     gacataatag tattctcgac gtccttacaa gaacatatca accacctaag ctcgatcttc      2820
     aaaaaactca ctctggcaaa tttaaaactt cagccagata aatcggaatt cctcaagaag      2880
     gaattagaat atcttggcca catagtgacc gaaaaaggcg ttaaaccgaa tccaaagaaa      2940
     attgaaacta ttaaagcctt ccctatgcct aaaaccagaa aagaaattaa gtcattcctg      3000
     gggttgctgg ggtactatag aagatttatc agagattttg ccaaaatcac taaacctcta      3060
     actcagcaac ttaaaggaaa gtcagacgtg accatcgacg ataactatat taaaacattt      3120
     gaattttgta aaacactctt atgtaatgac cccatactac agtatcccga cttcactaaa      3180
     tcgtttattt taacaacaga tgctagtaat gtagcaatag gagcagtgtt gtcccaagga      3240
     actgtaggaa atgatagacc tatagcatat gcaagtagga cactatcgga gtccgaaacg      3300
     cattatgcca ccataaaaaa agaattactg gcaatagtgt gggcagtgaa atattttcga      3360
     ccatacttat ttggaaacaa atttctactg gtcactgatc acaagccttt agtttggtta      3420
     aaaaacctaa aagagcctaa ttccatgtta gtgagatgga aactccaact cttagaatat      3480
     gactgtgaag tcatttataa aaaaggttct caaaacgtgg tggcagatgc attaagcaga      3540
     attgttgtcg aactcaacac taatgaagcc agaccaataa cctcagatac agaaatttta      3600
     acctctaaca gaccaataaa tgaatttgca attcagatca tattaaagat tgcagattgt      3660
     gcaaacgact tattggaaac accttttaaa aataaactca gacgaattat ttccagacct      3720
     ctgttcgacg atcagacaat gatagacgta ttaaaaacgg cactaagatc aaataagacg      3780
     catgcaattt ataccactga tacaattttc gaatcagtgc aaaaaattta tgcagcattt      3840
     ttcgctccaa gtaaatcata taaaattata aggtgtacaa catatttaga tgaactccga      3900
     acaccagaag aacaggtcga atacatatct gactaccata tcaagaacaa ccataggggc      3960
     attgacgaaa ccgttagtca tattaaacga cagatttatt tcccctgttt aaaagagagg      4020
     gtttcccaac tgataaacaa atgcgacatt tgtcaaaccc tcaaatatga tagacaacct      4080
     cagaaaccaa tatttcagct aacagaaaca cctaataaac cactagacat tgtacacata      4140
     gatctatact caattaacaa taaaaccatt ttaacaataa tagacaaatt ttcaaaattt      4200
     gcagaaggtt acactattcc atctcgagat tccattaaca tcactaaaca tatgatgttc      4260
     ttcttcaaga cccatggtat tcccaaaaca atagtttgcg atcaaggccc cgaatttgca      4320
     ggaattattt tcaaagaatt gtgtaatcaa tacaatataa ctttacatgt aacatctttt      4380
     caacaatcaa gtagtaatgc cccagttgaa agattacatt catcgttgac ggaaatttat      4440
     aggataattt tcgaaaagaa aaaggcatta aaactcaacc tagaccatga ttgtatccta      4500
     acagaaacat ttataacgta caacaacgcc atacactcgt ctacaaaatt gactccatat      4560
     gaagttttta caggacgaac ccatattttc gaacaaaatt ataaggcagt cagtcaacaa      4620
     gactacatga gggaactgga aagttataag aacaacttat atgtagaagt aaaggaagaa      4680
     tttgaaagtc aaaaactcaa caaaattcta aaactaaatg aggacagagt attaccaata      4740
     gcggtacagg aaggagatac tgtttttaga aaggaaaata ggagaaataa gctaacaccc      4800
     agatttaccc aacacaaagt agctgatgat aacggggtaa cctttacaac gaacaaaaga      4860
     cagaaaatac ataaatcaaa aattaaaaaa agaatcagac aaaatagtag ataaatatat      4920
     aataatatca tttcaggtta tacatgacag cagctcaact gctccatgtt caacatgtta      4980
     aggaaaatac ccccctagca gagatcaaac tgggagaagc aaggaccatt aaaacatata      5040
     gttcagtggc ccatgtaata gaactaacgg agttaaaaaa taatttgaat aaattagaat      5100
     caagtctaca aaatttacaa gatgaagact ctaatgattc aataacaccc atacaaagaa      5160
     agatagacca agcaagagaa aagatctatt ccttgacccc aaaccgaaga gaaaagagag      5220
     gcttaataga cggtctaggt aatgttataa agaaagtaac tgggaacatg gacgcagagg      5280
     acgcagctaa aatcgagaca aaatttaagc aagtatttga aaatgaagaa aacattaaca      5340
     agaacctcgg gcaacaaatt tcttataaca acgacataat cgtaaatttt aataatatgt      5400
     ctgatcattt ttataaagaa caggagaaaa ttgagaggta cattaataac tttaaaaatg      5460
     gcatttctaa ggaattaata gtagaagata agaaaattag aattttacaa atattgaata      5520
     taataaataa taatatagat attctccaaa accacataca tgatatagct gaaagtatac      5580
     tattggctaa attcaaaata attcccaatt ttattttacc tatacaagaa ttgaaagata      5640
     ttgcacagat ttttaaactt caaaattttt ctattaattc agaagagcat atttacagac      5700
     tactcaacat agagatagaa tccaaaaaaa caaaaataat atttcatata aagattccaa      5760
     tatttgataa gtacacttac acactttctc acctaattaa attacctatc aatggcacga      5820
     attttctcac tctacccaaa tatatattgt acgatgataa atttaattat atgttaagtt      5880
     ttcaagaaaa atgttcaaga atacatggca cttacatctg cgaccccgga actgcggaaa      5940
     gtaacatggc caacagggag tgcgtgaaac aagtgctaca aggaatgaac cctgtttgcg      6000
     aggcaaagat tatcaacacg gacgaggcgg tagtagaacc ggaacaacag tggattgtca      6060
     ttatcagcaa gaatcaacta agggctgaac caagttgtgc tgaaccgttc actattgagg      6120
     gaacgacgga ttatcaatca cataaactgt tccatattta tagacggtac caaatacgat      6180
     gacagcgaat tgttctacca agaaaggatt aaattatcac taccaagtaa cgaagaacat      6240
     atctataaat gcaacatcgg aggatttaag cctaagcaaa atagtactgc atcttcaaga      6300
     gaataaagct aaaatattcc aagtcaagga atctacggat taaccttcga ttcataacct      6360
     acggcatcaa gtatcatcct ggtcatattt atactgtatg ctttagcagt aaggagaaac      6420
     actacttacc tgcccaaccc tgttacctca gtcaactacg ttccgtctat tccttcgtta      6480
     tggccgtcac tttattcaag ggggggagg                                        6509
//
ID   HETA        repbase; DNA   ; DRO   ; 6081 BP.
XX
AC   U06920;
XX
DT   30-JUN-1999 (Rel. 4.05, Created)
DT   30-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon HeT-A.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; HETA; telomere.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6081
RA   Danilevskaya O., Slot F., Pavlova M., Pardue L.M.;
RT   "Structure of the Drosophila HeT-A transposon: a
RT   retrotransposon-like element forming telomeres.";
RL   Chromosoma 103(3), 215-224 (1994).
XX
RN   [2]
RP   1-6081
RA   Pardue L.M., Danilevskaya N.O., Lowenhaupt K., Wong J., Erby K.;
RT   "The gag coding region of the Drosophila telomeric
RT   retrotransposon, HeT-A, has an internal frame shift and a length
RT   polymorphic region.";
RL   J. Mol. Evol 43(6), 572-583 (1996).
XX
RN   [3]
RP   1-6081
RA   Danilevskaya N.O., Lowenhaupt K., Pardue L.M.;
RT   "Conserved subfamilies of the Drosophila HeT-A telomere-specific
RT   retrotransposon.";
RL   Genetics 148(1), 233-242 (1998).
XX
RN   [4]
RP   1-6081
RA   Pardue M.;
RT   "HETA.";
RL   Direct Submission to Genbank (17-FEB-1994)Mary-Lou Pardue,
RL   Massachusetts Institute of Technology, Biology, 77 Massachusetts
RL   Avenue, Cambridge, MA 02139, USA.
XX
RN   [5]
RP   1-6081
RA   Pardue M.;
RT   "HETA.";
RL   Direct Submission to Genbank (11-MAR-1998)Mary-Lou Pardue,
RL   Massachusetts Institute of Technology, Biology, 77 Massachusetts
RL   Avenue, Cambridge, MA 02139, USA.
XX
DR   GenBank; U06920; Positions    1016    7096.
XX
CC   HETA is a telomere specific LINE-like retrotransposon; it forms
CC   tandems and its promoter is located at 3' UTR.
XX
SQ   Sequence 6081 BP; 2199 A; 1545 C; 1032 G; 1305 T; 0 other;
     aaataaataa aataaattaa acaattaact aaataattaa ataactaaaa ttaataatat        60
     aatccgttcg cttgccaaag actctcacgc gcataactaa ttaaaatcga ttttcaagtt       120
     gacaaataaa tggtttaaaa ttgtcctcag gctgcaaaga aaagccgcgg caacaataaa       180
     catttagtga cacgcgaaaa gcgaacattt gattagtgta atacttgtgc aaaccgacaa       240
     gctgccgcca taacaaaacg gagacgaaga atcataaaga acaaaagcta aatccaccag       300
     catagcaaaa ataaattaac aaataaaata aaagcaaatt taaataacat aataaattaa       360
     acttatttaa taaaccaatt aattttaatt aattcaatta aacgctaaat ctacataata       420
     ctccacgcgc aaattaattg aaatcgtctt tctagttaat aaattaaaag tttaaaaatt       480
     gtctccggcc gcaaaatttg aaccgcgacg ataaaaacat ttaattgaca aacaaaaagc       540
     gaacaattat tcagtgaact atttgtgcaa aattgacaag cagacgccat aattaaaagg       600
     agaagaagcc aaaagacgaa gagaagaaag caaccagaag aactcaaaga agaaaaggag       660
     gaaagcccaa ttaaagaaag ccagggtatt tataccttac acttatcgtt taatataaca       720
     aaaacccaac atgtccatgt ccgacaacct tttttctgac gatgaggtac tttcaatttc       780
     ctcaagccca gaacagcgat cttctccgtt ctacctcaat atatcgccca tgtcccacgg       840
     atcagacaat tctcagatta atacagtcat cattaattcg aagaaattgc cctcaaatca       900
     agcagacata agtttaaaaa actcttctgg ggctgctata aaaattgtta attccctttc       960
     acacaagaag aaagagaaca caaacgttaa taatgcccaa aaagaccccc tctcactcac      1020
     caatactact gcaagcactt gtggcgccaa aagcagcatc tcagagggga aattgtcttc      1080
     tcctccgtcc acctcacaca catatgaggg gaaattactc acaaaactta ctcacacaca      1140
     cacagacttt agaggcgcca aaacgagcga tgcaatggga agtttcccct ctctctcgca      1200
     cagcgacaat agcatagaga aaaatctgag ttcttccacc aaaattggac caaacgcttc      1260
     ttcccctcct tctcatgcac acactcacac tagcaaatcc actgatataa gcttagaaag      1320
     ccgctcaaaa catcccgcgc ttgccaatac ggacgcacgc tctataaaag ccaatgctaa      1380
     tgacaatggg gaaattttct cctcacttat acaaattgac gaacgcaagc aagaggaaag      1440
     gccttgcaca actatcaacg ctttttggtc tatttttaaa cccaagccgg acgttactaa      1500
     actaagtcta aagaggaaac ccaccaatcc cactaaaaac actgggaaaa aatgcatctc      1560
     ccctcataaa aagagcgctt atttatgccc ttccgctcag gatgatttaa atttaaattt      1620
     aaaccccaaa tctagcgcca agcccactgt ggtgaattta ccagctgccc gcatcctaag      1680
     ccggcctgca gccaagcggg atttatttaa atcatcatcc tcccgaagcc cagacgagca      1740
     gcctatgagt ttttcggaag tggtcgctgg cacgggttca atttttgcgg caccctgtgt      1800
     cccggcacct ttaacgaaaa ctccaggcaa gcggacaaac gacgatctgg actgctccaa      1860
     ctttaagacg cccaataaaa aattatgcgc gacttccaac tttgtaactc ccagcatttt      1920
     tccgccgctc atcactcccg ttttcaagag caaggcagct caatctgttt acgaggaatc      1980
     caaagccaga aatggacccc ccccgccggc cctcgcctgc agcatcaatg cctctgctcg      2040
     cagcgcacgg cgccacccgg gatcgccccc ctaccccctc ataatacaga tgcagagctg      2100
     cctccatgga aaatcgtgcc ccagagccgt agagcacctc ctatactcgt caatgatgta      2160
     aaggaaattg tacctctact ggaaaagctg aactacacag caggagtctc cagctatact      2220
     actagggcta tagaaggaaa cggggtcagg atacaggcaa aggacatgac cgcctataac      2280
     aaaattaaag aagtcctggt ggccaacgga cttcctttat tcaccaacca gcccaagtcc      2340
     gagagaggct tccgagtcat catcagacat ctccaccact ccacaccatg ctcgtggata      2400
     gtcgaggaac tgctgaagct cggattccaa gcgcgattcg tcagaaatat gacgaatccg      2460
     gctacaggtg gccccatgcg aatgtttgaa gtggagatcg tcatggccaa agacggcagt      2520
     catgacaaaa tactctcact caaacaaatc ggtgggcaaa gggtggacat tgaaaggaaa      2580
     aacaggacac gggagccagt ccagtgctac agatgccaag gcttcaggca tgccaaaaac      2640
     tcttgcatga ggccgccaag atgcatgaaa tgcgctggcg aacacctgtc ttcctgttgc      2700
     accaaaccaa gaaccacccc cgccacctgc gtaaattgct ctgggcagca tattagcgcg      2760
     tacaaaggat gccctgcata taaggcggaa aaacaaaagc tggcggcaaa caacgttgac      2820
     ataaacaaaa taagaacaat caaagacgca acaaataact tttataaacg tcaaggcccc      2880
     cctctacgca acaacacccc tcggctaccg cacagctcag caatcctgag caaatcaatt      2940
     gccgaagctc gccaggaggc agccagaaag tcgatgttaa atccattccg acaaaatata      3000
     aacgacagaa gaccacgatt ctcctcccac gacacggcca ttcagaagcg tctgaataaa      3060
     tggcgccgaa acaccaacaa aatacccaaa aagggtagga tagccttaaa ggataatgca      3120
     aagccacgac cggcacatag gacaagtaac ccagcgcaaa gacatctgga ggactaccag      3180
     gacatgctcc gaagggaaag gagtgaagaa aacgaccagg aatctgagaa gggcaccccc      3240
     aataccaagc aggtcggcaa tgacagccct ccgaccacga gcagagcagc cagagccagc      3300
     tttaagccaa gaatcattga cgataccacg ccatcgccaa aaatctgcaa tcccaactca      3360
     caaaaaggcc tcttggacga ccccacaaca agcttagcta atagagtcga caatttagaa      3420
     aagaaaattg acattttaat ggccttaatc atacaaggaa gaaataacaa tcttgacatg      3480
     gatacatcca attaatctta caactactta tatattcttt aataaatata tccaatagaa      3540
     aagcgcacgt cggtctgctt ttaaaatcct tcaccgtcat caccttcctc gacggagcct      3600
     aatttattgg aaaaataaat caattatatg ttggcacaaa aatgtaaaca cacactcacc      3660
     taaacgcacc cggacgaaca agcctatgac aacgcactcc agctgatctg taagaaacaa      3720
     aaaatatgaa tagatagatc gatatgaaaa ggatatgtgc ggcagaaaca tgatgagcaa      3780
     aaggcgactc gctgcagcaa cttatgcaca acgtcactta cctgaaattt cttgccgtac      3840
     gatctcctgt agtatccctt atcacagctg caatctactt gcaatgctgc actgcaataa      3900
     acgtactaca aaagctgcat acgttttgat caggacacct cgtgcggacg tgctaaaaaa      3960
     aatttccttt ctgctgctct tattgacgct aaaaccttaa aacctacaaa caaaacaatt      4020
     aaataataac aaatcaaata agacaaccaa ataatacact tacctcattg actgcagcta      4080
     aatcgctgac ccacattcag tgcagccgac agcaggagac gggcccgcaa aagcaaaaca      4140
     aaatcgccaa ttttgcgatt ataaacacga aaaattgaca attttgcgat gccgtctccg      4200
     cctcctgatg ccactgcatt gacaagcatc actagcgagg agctgacacc acaccaaaaa      4260
     gctgtaaaat ccgtccacaa attgtatatt ttgcctcagt gtcgtatctg caatgttttt      4320
     ccgataacct gtaaggaaag aaaaattaat aagaaaatta tacaaaatta attaaggacg      4380
     acagaaaata gcaaaccaga caggcaaatt aacagataca aatatgagac tccatcctgc      4440
     tgccgacaca caagtaaatc cttcaactcg acaacaggag acgggccttg caaaagcaaa      4500
     acaaaatcgc caacttttgc gattataaat acaaaaaatt gacaattttg caacgccgtc      4560
     tccacctcct gttgccactg cattaataag gatcaccagc gcggcgtgac gccacactaa      4620
     aaggctgcaa aatccgtcca caaaatgtat acttttcctc agtacaatac tttctaatga      4680
     acttccgcca acctgcaatg aaaagaaaag aaataggtat ataaaacaaa acaaacaaaa      4740
     ggacaaccta aaattagcaa accagacagg catactagta gatgctaata tgcagctcca      4800
     tcctactgac gacaaccacg caactccttt ctccaagacc gcaaatactg aaacaaggaa      4860
     gcacaagcta atactgggaa ttatttattt aaacaaaaat acttatctaa ttgccaattc      4920
     gacgactcca aatccgcggc taaccggcgg cgatggccca taaataaagg gcctcctaat      4980
     taattacaaa atgtacctga aaaacataaa attaacgcaa ctataattaa cgcaattaat      5040
     aaatcaaata aatacaagta taatacttac ctccaagcaa acgtacctga aaaacaaaac      5100
     caaaaaaaaa attaatgcaa taaataaatc aaataaatac aaacataata cttacctcca      5160
     atttacctcc cagccaatct acctgaaaaa cataatctaa tacaatctca aaaacaaata      5220
     acaaatgtaa tacttaccaa attttaattt tgtattcatt tccatgaccc caacgctgca      5280
     actgtcctcg gcaacaattc ctgttccggc ggctccatgc tgccaatcct gacgcactgg      5340
     ccacaagacg cggcgctgct ggcaatctct cgatgaacaa ccgatctaca atttccatga      5400
     cgactcctct gtcacgatga gacagaagac accaccaacg ccagcagctc caaaacaata      5460
     caacaacggc cgcgcggaac ccatcttcag aattccctct tcctgacgac cggcgaacga      5520
     gttctggaat aaacaatgta ttaattgcaa acatctaccg atgagggtag aagagatact      5580
     caccaaacga ctgcggcgcg ggaacaaact aactgcaacg ccggccggac ctatttgttg      5640
     caagtggcgc gcatccagcg cctgcaacat gccccagccc aagtacacaa ctacttacct      5700
     gcaacgtcgc cagaggctcc cagcgaatcg gtgcttccgt ccttctggcg ggggtacctg      5760
     aaaagaaaca aattaaacaa tattaatcct aaatttcaat gttttttgta aaataattta      5820
     aattgttaaa tgtaaacaag ccttgcaata tgttaatgtt accagtccat gctactgtct      5880
     aaaagccaag aatacaaaaa atactaatta taaactaact caccacgccc aacccccaaa      5940
     ctcaccccat gcaatgttaa acctataaat tcaaataatt gtacctatat attgcacata      6000
     ctgtaatcaa aggcaaaata aatcgtggat gcggaacaga atttactctg tctccgtacc      6060
     tccaccagca aagttaaaaa a                                                6081
//
ID   G5_DM       repbase; DNA   ; DRO   ; 4856 BP.
XX
AC   .
XX
DT   01-APR-2002 (Rel. 7.03, Created)
DT   01-APR-2002 (Rel. 7.03, Last updated, Version 1)
XX
DE   G5_DM is a non-LTR retrotransposon - a consensus sequence.
XX
KW   Jockey; Non-LTR Retrotransposon; Interspersed Repeat;
KW   AP endonuclease; DNA binding protein; G5_DM; JOCKEY clad; ORF1;
KW   ORF2; RNase H; reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4856
RA   Kapitonov V.V., Jurka J.;
RT   "G5_DM, an ancient family of non-LTR retrotransposons from the
RT   Jockey clad.";
RL   Repbase Reports 2(3), 2-2 (2002).
XX
CC   [1] (Consensus)
XX
CC   G5_DM belongs to the JOCKEY clad of non-LTR retrotransposons.
CC   Its copies have 3' poly(A) tail and they are flanked by ~10-bp
CC   direct
CC   repeats generated upon integration into genome.
CC   G5_DM forms a separate family of retrotransposons that were
CC   recently
CC   (several million years ago) active in the Drosophila melanogaster
CC   genome.
CC   There are about 15 copies of G5_DM in the genome, they are ~4%
CC   divergent from the consensus sequence and ~10% divergent from
CC   each other. Although the G5 copies have accumulated multiple
CC   mutations,
CC   the consensus sequence contains two ORFs (positions 411-1976 and
CC   1966-4683) that encode the 522-aa G5p1 and 906-aa G5p2 proteins,
CC   correspondingly.
CC   G5p1 is a putative DNA/RNA binding protein:
CC   MDNGPQQKSIDYESMMLIAGAGPKEIREQMKKSWKSETPASATTGISNTYCSSTFTLTSTSSTISSAYIF
CC   TSSLSGNICSTAASTIHKSASVSSIAKPQLATGWHDVSFKSRNGGIKKRAGAVFSPKMAKKVATDMPAKI
CC   SANCFQVLSDDEDMVVGEASSSDDDEPCSSNTALKRAARKAGPKQQLKGAHQTVPAAPKSSRHSKVPRMM
CC   FPNVVNFTAFRSELDALVGDSYTIKVLNSGDCAVQCNSPDSYRLVARHFLDKGSLFHHHQLPEDRPYKIV
CC   MRNIHHGVPSEDIIATLQNEGHNVVRIYTPRNKATSLPLNMRFIDLKKAENNNQIKGISVVCRHRVIWEK
CC   PRKQSEPIQCHRCQGYGHTKAYCSRHYICRECGENHPTAECKLEQDEARFCFHCGGPHAANFKGCKKYLL
CC   EASNRKNQRKVNEPSGSGPARGPHQPCPPAHMSGKPSFANFVRGSQPVAKPAVIVPHASANLESKLEQLF
CC   IRLDRMMSLVETLMQLLLQTRTFPSAAQNGSS
CC   G5p2 is composed of the endonuclease, reverse transcriptase and
CC   RNase H
CC   domains:
CC   MGPLKVAAWNANGASSKTNEILAFIELHEIDILLLSETHFVSRSTFRVPGFTLHTANHPDDSKRGGAAIL
CC   IRSLISHLPFSTLSENHIQTAVIQLTASRGTFNIASVYCPPNLRWTEADVELIIAQFGTKFLAAGDWNAK
CC   HRWWGNYRMCTRGRVLFSALAGEGIDIVATGEATCYPFRASATPSAIDFGISKGFRQQEINVQLLTELSS
CC   DHLPLLFELDEDAQLFKGVTKMLSPTANTVAFKEHIEATVDLNIPIDTCNSLEAYVDYLAATIAEAARRA
CC   TPPPHQARHTTARRAPILSLEARELLSHKRRLRRRYIATGDPSIKQLYSSTTNKLHRLLARTRRENLDTL
CC   LEGTGPDNNSHFSLWRLTRGIKRQPLFQSPVQSHSGLWLKTDDEKARAFASHLTSTFMPFNLTDDSNRVA
CC   IINFLDTPTAPARPIRHTTPQEVIMQLKALQIKKTPGYDGIDNRAAKSLPRKGVLALVKIFNAMLRLGHF
CC   PRQWKRARIIMIPKAGKPPTKIDAYRPISLLSTFFKIFERILLARLMELPQVVNHIPRHQFGFRKSHGCP
CC   EQIHRLVNQVTHGFEHKLYTVGVFLDVKQAFDRVWHEGLLYKMKALLPAPYYAILRSFISHRTFDVAVRD
CC   ARSSLEEIHAGVPQGSVLGPFLYTLYTADLPSPANNTEVSPDQLLLATYADDTAMLASHPVLQTASNAVQ
CC   EWLHAVEKWTAKWNVAINSSKSACVTFTLRPGTCTDLTFDGNPINNVTSHCYLGVHLDRRLTWRAHITSV
CC   KFKSLAKLKKLDWLFHSSKLQMSSKALLIKAILAPTWSYAIQVWGTAAKSQLNRLRVVQSRAARHASGLP
CC   WYVTNQVIERDLKVTPLGDQINFHSSRYADRLMVHPNRLANILANPISLRRLKRVHPTDLPTRRIV.
XX
SQ   Sequence 4856 BP; 1320 A; 1338 C; 1088 G; 1110 T; 0 other;
     acttcgtttc gcagttgcga taagccggac gcgtttttgg tgcagtgaca cagtttggtt        60
     taacaaattt acggacaagt ccacaactgt ggcacgaagt gtagtgatcg agaacataat       120
     caaattatgt gttggcaagt gaaagtgtgg cgacttttgc tagccagcgt cgcttttctt       180
     tacttggtga ggctggctca agactcactg aaaaacttca cgaggcgatc agctgtgagt       240
     gctttaagct gtaagagctt taagccctgg ctgtttcgtg tccacggtac actactactt       300
     tcaaaccgcg atcttcaaga tctatctggg tcgtgtctta gatactctgc cgctaaaact       360
     ttaagcttct agctggttcg agtcgtcgct aagcattttt ctttttgaaa atggataacg       420
     gtccacagca aaaatctatc gactacgagt cgatgatgct aattgctggc gcgggcccaa       480
     aagagatacg ggagcaaatg aaaaagagct ggaaaagtga aactccagcc tctgctacta       540
     ccggtatttc aaacacctac tgcagttcga ccttcacact gacctccacc agttcgacta       600
     tctcgtctgc gtacatcttc acctcctcct tgagcggcaa catatgctct actgctgcca       660
     gtacaattca caaaagtgca tctgtcagct caatcgcgaa gccacaactt gccaccggct       720
     ggcacgacgt ctcctttaaa tcaagaaatg gtggaatcaa aaagagagca ggcgcagtct       780
     tctcccctaa aatggcaaaa aaggttgcaa ctgatatgcc ggcaaaaatc tctgccaatt       840
     gcttccaagt cctaagcgac gatgaagata tggtcgtggg agaggcatct tcgagtgacg       900
     acgacgagcc atgctcctcg aataccgccc tcaaacgtgc cgcaaggaaa gcaggaccaa       960
     aacaacagct gaaaggtgct caccaaactg taccagccgc cccgaaatca agccgtcact      1020
     ctaaggtgcc tagaatgatg tttcccaatg tggttaactt cacagcattt cgcagcgagc      1080
     tggacgccct tgtgggcgac tcctatacaa ttaaggtcct aaattcggga gactgcgctg      1140
     ttcagtgcaa ctcccctgat agctacaggc tggtggcccg gcactttctc gacaaaggat      1200
     ctctttttca tcaccatcag ctaccggagg accgacccta caaaatagtc atgcgcaaca      1260
     ttcaccacgg agtcccatcg gaggatatca tcgcaaccct ccagaacgaa ggacataacg      1320
     ttgtacggat ttatacccct cgcaacaagg caacctctct tcctcttaat atgaggttca      1380
     ttgacctcaa aaaggcggag aacaacaacc aaataaaggg catatctgtt gtctgcaggc      1440
     acagggtaat atgggagaaa ccccgtaagc aatcggagcc gattcaatgc cacaggtgcc      1500
     aaggctatgg tcataccaag gcatattgtt ctcggcacta catatgcaga gaatgcggag      1560
     aaaatcaccc cactgcagag tgcaagctgg aacaggacga ggccagattc tgctttcact      1620
     gtggtggccc ccatgcagcc aactttaaag gttgcaaaaa gtacctgcta gaggcttcta      1680
     accgcaaaaa ccaacggaag gtcaatgaac cctctggttc tggtcctgca agaggaccac      1740
     accaaccctg tccaccagcc cacatgtctg gaaagccttc atttgcaaat tttgtcagag      1800
     gaagtcagcc cgtcgccaag cctgccgtta ttgtccccca tgcaagcgct aaccttgagt      1860
     ccaagctgga gcagctgttt attaggcttg acaggatgat gtcactagtt gaaacgctaa      1920
     tgcaactgct cctgcaaact cgcaccttcc cttctgctgc tcaaaatggg tcctcttaag      1980
     gtagcagctt ggaatgccaa tggggcctcc tcgaagacca atgagattct cgccttcatc      2040
     gagcttcacg aaatcgacat cctcctgctg tcggaaaccc atttcgtttc ccggtccacc      2100
     ttcagagttc ctggctttac cctccacact gccaaccacc cggatgacag caaacgcgga      2160
     ggtgcggcga tccttatcag atcactcatc tcccacctac ccttctccac cctgtcggaa      2220
     aatcacatcc agacagcagt tatccagctg acggcaagca ggggtacttt taacattgcc      2280
     tcagtatact gccctcctaa tctcaggtgg acggaggctg acgtcgagct gatcatcgct      2340
     caatttggca caaagttcct tgcggcaggt gactggaacg caaagcacag atggtgggga      2400
     aactacagga tgtgcactag aggcagggtg ctgttctctg ctctggcggg cgaaggtatc      2460
     gacatcgttg caactggaga agctacttgc tatccctttc gagcaagtgc cactccaagt      2520
     gccatcgatt tcgggatctc caaaggattc agacagcaag aaatcaacgt gcaactactg      2580
     acagaactgt catctgacca tctccccctg ctgtttgagc tggatgaaga cgcccagcta      2640
     ttcaaaggtg tcacaaaaat gctgtcacct actgcaaata ctgtggcctt caaggagcac      2700
     attgaggcca cagtagatct caacatcccc atagacacct gcaatagtct ggaagcgtat      2760
     gtagattacc tcgcagccac aatcgcggaa gcagcacgga gggccacacc tcccccacat      2820
     caagctcgtc acacgaccgc aaggagggct cccatcttga gcttggaagc cagggagctg      2880
     ctctcccaca aaaggcgcct caggagacgg tacatcgcaa caggagatcc tagcattaag      2940
     cagctatact ctagcaccac taacaaactg caccgtttgc tagccaggac gcgacgagaa      3000
     aatctggata ccctgctgga gggtactggc ccagataaca acagccattt ttcgttatgg      3060
     aggctcacaa gaggtatcaa gagacagccg ttgtttcaat ctcctgtcca gagtcacagt      3120
     ggcctctggc ttaagacgga cgatgaaaaa gcgagggcat ttgcttcgca cctgacctcc      3180
     accttcatgc ccttcaacct aacagacgac tcaaatcgcg tagccatcat taattttctg      3240
     gacactccga ctgcaccggc tcgccccatt aggcatacca caccgcagga agtcataatg      3300
     cagctgaagg cgctgcaaat caagaaaacc cctggttacg atggcattga caaccgtgct      3360
     gcgaagtctc tgccacgcaa aggagtccta gccttagtaa aaatatttaa tgccatgcta      3420
     aggctagggc actttccaag gcaatggaag cgtgcacgta tcatcatgat acctaaagcc      3480
     ggaaagccgc caacgaagat cgatgcatat cgcccaatca gcttgctatc aactttcttc      3540
     aagatttttg agagaatact cctagcccgc ctgatggaac tgccgcaagt agtgaaccac      3600
     atacctcgac accaatttgg cttcaggaag tcccacggct gccctgaaca aatacatcga      3660
     ctggtaaacc aggtgacgca tggcttcgag cacaaactct acacggtcgg cgtctttcta      3720
     gacgtgaagc aagcgtttga cagggtgtgg catgagggcc ttctatacaa gatgaaagct      3780
     ctccttcctg ctccctacta tgccatcctg agatcgttca tctctcatcg gactttcgac      3840
     gttgcagtgc gtgatgctcg gtccagcctg gaagagattc acgcaggagt tccacaggga      3900
     agtgttcttg ggcccttcct gtacaccctg tacactgccg acctgccatc tcccgccaac      3960
     aacaccgaag tctccccgga tcagctgctc ctggccactt atgccgatga caccgccatg      4020
     ctggcgtctc atcctgtact gcaaactgcc tccaacgcag tccaggaatg gctgcatgca      4080
     gtcgaaaaat ggactgccaa atggaatgtg gccattaact cctcgaagtc agcctgtgta      4140
     acttttaccc tgcggcccgg aacttgcaca gatctgactt ttgatggaaa ccccatcaac      4200
     aatgtcacat cgcactgcta cctaggagtt catctagatc ggagactgac ctggagggcc      4260
     cacatcacgt cggtcaaatt caagtcactg gcgaagctaa aaaagctcga ctggctcttc      4320
     cactccagta aactacaaat gagctctaag gctcttttaa tcaaagccat acttgctcca      4380
     acgtggagtt atgccatcca ggtgtgggga actgccgcca aatcccagct caataggctc      4440
     cgtgtggtcc agtcgagagc tgcacgtcac gcatctgggc tcccctggta cgtgacgaac      4500
     caggtaatcg aaagagatct gaaagttacc cctcttgggg atcagattaa ttttcacagc      4560
     agccgttatg ccgacaggct tatggtccac ccgaaccgac tagcaaatat cctagctaat      4620
     cccatctccc tccgaaggct gaagagggta caccccaccg atctccctac ccggaggata      4680
     gtataaaata ttacacatta agtaattaat aactagaaaa atttttcctt ttctacttaa      4740
     taattaagaa accacttggt ctcatataca tttatacaca caataggtta agttcagagg      4800
     aattgactga acgattcctt ttggatccaa aataaataga atgattattt aaaaaa          4856
//
ID   ROO         repbase; DNA   ; DRO   ; 463 BP.
XX
AC   X01918;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   Drosophila roo transposable element from 68C glue gene cluster.
XX
KW   Repetitive sequence; transposon; ROO.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-463
RA   Garfinkel D.M., Pruitt E.R., Meyerowitz M.E.;
RT   "DNA sequences, gene regulation and modular protein evolution in
RT   the Drosophila 68C glue gene cluster.";
RL   J. Mol. Biol 168, 765-789 (1983).
XX
DR   GenBank; X01918; Positions       1     463.
XX
SQ   Sequence 463 BP; 139 A; 92 C; 95 G; 136 T; 1 other;
     ctgcagagtc gattaaaggc tcagattaga ccaaatgtaa aatcccagat aagaagactt        60
     tactcgttgn ctttttgtaa gaaactgatt ttatttggaa atatcttcgg tttaaatagg       120
     tgacatgaga atcgcatctt aaagtaaatg gcctacgcag aggcctaagt aaatagtccc       180
     cgccttatcg aggtcccacg ctcgggcaca tctgcctatc ttgagcggcg aggaccttat       240
     ctgtggtctc ccactaaggg actattttag gaggcgggga acgatctcaa gtgactgact       300
     catgtagtgt gcacttaaat tacatgtttt tgagcaatgc acccatgtcg ccttagataa       360
     caaaatccta aatataattt atcgctctcg attcatttac ataagatatg aacggagccc       420
     aaaattgtaa gtctttaaat atattcgtgt tcatgtgtga aca                         463
//
ID   TART_B2     repbase; DNA   ; DRO   ; 4056 BP.
XX
AC   U14102;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Drosophila melanogaster TART-B2.
XX
KW   reverse transcriptase; TARTB2; TART_B2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4056
RA   Sheen M.F., Levis W.R.;
RT   "Transposition of the LINE-like retrotransposon TART to
RT   Drosophila chromosome termini.";
RL   Proc. Natl. Acad. Sci. U.S.A 91(26), 12510-12514 (1994).
XX
RN   [2]
RP   1-4056
RA   Levis W.R.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (29-AUG-1994)Robert W. Levis,
RL   Fred Hutchinson Cancer Research Center, Division of Basic
RL   Sciences, 1124 Columbia St., Seattle, WA 98104, USA.
XX
DR   GenBank; U14102; Positions       1    4056.
XX
SQ   Sequence 4056 BP; 1322 A; 966 C; 875 G; 893 T; 0 other;
     gatcaagggt caagtaataa agattgaaag caaacaatca taccttggcg taatccttga        60
     cagcaagcta accctcagct cccacgtcac aaagctgatg ggcaaataca ctacagccta       120
     cagaaaaatg acatggattc taaacagaag aagcaaactc cctaccaaga ctaaaatgct       180
     gatccttaag tcagtccttt caccaatatg gcagtatgcc atagcagctt ggggtcccct       240
     tgtgacggat gcacagataa gacggatcca agtcgaggaa aataggaaaa tgagagacat       300
     atgcagagcg ggtagataca cgagcaacca aactataagg gaccgctatg gaatcaaaac       360
     agtagaagaa ttctatcaac aggcactcca caggttctca gaaacaataa aatctcaccc       420
     aaatatagct gtacgcagga tattcacaag gcactatatc ccgaacagac tagaaagaag       480
     caggcagagg tacttgaaaa tgacaaatga acacatcacg caaaaacaga ctggacaaac       540
     actctcacct aaactcctaa aaatccctga tctaaatgac tgcagaaccc ttaaaaagcg       600
     gaatgaaaga gataaaataa ggcaaaccca tctaattgaa ctccccaccc tgctgagact       660
     agaggaagaa gaggaagagc ttagaagaat aaaaaaacag gaagagaggg aaagaaggga       720
     aaaggaaacc caaaagtggc ctccagacag atggtgtgaa ttagaaatta acctatataa       780
     taagcaatat agaaggggcg atctaaccag gcaggaaatc atacaaaaat ttagaggaca       840
     accactaaat gtacagagga taattttacc cgactataaa ggagaccagg aacacaatta       900
     aaagtaaatc atgggaaagc aggggaaaaa aaaacagaag taacaaaatg gcggaagggg       960
     tggcaaaata tatataaaaa taagaaaaga tagaaataaa aaggctaaag gctcacttac      1020
     aggttaattc aaaagggaaa cgtgcttaca tatctaatgg taaaaactaa cttataacac      1080
     ctactggatg acatagtgag gatgccacag gttgcgcact tgaatcacgc tttcctggcg      1140
     agattgttaa ggcatcaccg ggatcccgtc tctctttcct aactggagga ctcatgcctg      1200
     aaatcttttc cgcttcaccg gcacctgatg gccatatctg ctactgcgcc ttgcgctcca      1260
     cggacgctcc ttcctgaaag aaagagaatt tgttttagtt ttcctttctc ttcttaaaaa      1320
     tataacaaaa acagcagcag tagccgacca acaacatact tagcttacca aggcagcagc      1380
     aatgatacca acagaagccc tacagtgtgc tgaacaatat gccgcccacg cccaccactt      1440
     ctggaactca ggaatggggg gtacggaatg ccggaaactg gaggattcgc ctcaaatgtt      1500
     acgcttacat ctttgagcaa atcgcctgcc tcctcgtcta acggcccggc gtcttggtac      1560
     gcccagaagt agcagcggta gcaggattag cagcctccac agagatatgt tcatcccagc      1620
     atcagtccag ttggcattgt gatgccgccg tagcgtacgc cctcagagac ccgactggaa      1680
     tcccaggaca agagacggca gcacgcctgg gcttaggcgc gggacaacat gcagagattc      1740
     gtcaatgaga atggcggcac tggaatcacc tttcagctga gcgggataat gagtcggcaa      1800
     cgcaccgcac tatcagcagc aataacaaca tcggcagatg acctggaaga aaggaaaaaa      1860
     catgtatcag tcttttcttt tctttttttt tcccattagc atgcgttttt aaattccatt      1920
     cctgaaaacc ggcgttttcc tgtaaaagac actggacggc ggcgtttgtt ttaaatgcaa      1980
     agattggatg cttgcatcag ggctgacgtc cttgaatagc cgatgccttg taattgcctg      2040
     catagccgcg gaggtcctga tgacggatgc tggcctgtat ttggccacca ctccgatgcc      2100
     atgacagcag caacagcagc ggtttttgca aatgagaggg atcaggaggc ggcaacacat      2160
     tcacccgtag cagcaacaac aagcagtggt agcatcagca gggagtcttc tcgccacaat      2220
     agccatttgg aaatttctcg acgacccgac ttcctgcttg gcccatggtc aatcacactg      2280
     gaccagttaa cagcggcgtt ttaccctgga agaaagaaaa cttgtattat tcattccctt      2340
     ttctctcaca gttgggtatt taagtgcatt cctggccaac ctagcgtgtc tcctggcaat      2400
     gacgtcggac tcaacgcatg cttcccttcc gacacagtaa ggatgttcgc atctgggctg      2460
     acgggccagg ccggtccgtt gccatacatg ctagcgtttc cgcggcggcg tagtgaacat      2520
     caaaccgtat aatggcgaag acgacgatga tccggccgga tggcagctcg acgacggtag      2580
     caggccacca tgcccgccag cccgcagcta ggatagcagc aacatcagcg tcttattaac      2640
     gcgaacggcg gcactggccc ttagctgacc agctgcaaca acatcagcga cgcagtctcc      2700
     accagcagca acaacagcag cggcgcttgc gacagcagca gcagggaatg gttctgccgc      2760
     agtcgcctat tgctgcctat aaagagcatt ccttgccaat tggctttctg tacgacgacg      2820
     atgatcctgc ggacaaatcc acctttccgg acgcctgagt attatggcga gcctgctgat      2880
     cattgtttct ccgactcctt acttgaccac tggacaatca tacaatcacc ggcttttcac      2940
     atctggaaga aagaaacctg gattagtatt tgcccttcag atttgtatga aactgcattt      3000
     ctggccaacc ggagtgtttc ctgcagacga cgctggactg cgacgcactt ttttctacca      3060
     acacagatgg gacgcttgca tcagatctga cgggccagac tggccgatgc ctggtacacg      3120
     atggcatctc cgcggcggcg agatgtgcag cgacgctgaa agcaataata attcttttac      3180
     tttgcagtat caaaaatgag aagccacatc acaatttaca tcagcaaaaa ttacacgtga      3240
     tatctttttc ttttgcctag gagtagtgag acctgctacc aaaatgacca gtaataccgg      3300
     ctaacggaag cgagatatcg ataatcattc tggcggtaaa atagccagaa catcgataac      3360
     cagctgtgca ttttcccttc gatttatcga agtcaaatag cccgcctagg ctatcggacc      3420
     ggatcggcaa gtcagtagtg attaaaaatc cggcagaggc gcctgtgcag cagctaccca      3480
     aagtgaacac gacgaaacgc aacaacaaaa tggacggaca taatggagat caaagtgaag      3540
     gatgggcaac agtgctatct atctcctcgg atgatagtaa ctccttgtcg tcgctgcata      3600
     tataaaataa taaatttctt aaaataattt catcgctgga ttcctgcgcc accataaatt      3660
     acttatagaa tacacttaac actgtaccca ctaatgctaa aaattttctt atacaatttt      3720
     actttaaagc taaaactact taaactatgg cgcgtaaaac ggccgtcaaa aatatccaaa      3780
     aattgtactt gccataaaca aattctaaca taatgtaaat cctaaatcgt aaaatcatgg      3840
     cgaacataac cgccgccaag caaatcaaaa aatgttccta gaaattgtaa atcttaaacc      3900
     tacttctcta actaaagcgc gcacaactgc cgctgatccg aaattgtaaa atgccataaa      3960
     ttgtaactat atattttata aaaaaaatca gagtacaata aaatgacagc gccgaaaggc      4020
     actgaaaata tttaaaaaaa aaaaaaaaaa aaaaaa                                4056
//
ID   TART_B1     repbase; DNA   ; DRO   ; 10654 BP.
XX
AC   U14101;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Drosophila melanogaster TART-B1 transposon.
XX
KW   Repetitive sequence; TARTB1; TART_B1; transposon.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-10654
RA   Sheen M.F., Levis W.R.;
RT   "Transposition of the LINE-like retrotransposon TART to
RT   Drosophila chromosome termini.";
RL   Proc. Natl. Acad. Sci. U.S.A 91(26), 12510-12514 (1994).
XX
RN   [2]
RP   1-10654
RA   Levis W.R.;
RT   "TART_B1.";
RL   Direct Submission to Genbank (29-AUG-1994)Robert W. Levis, Fred
RL   Hutchinson Cancer Research Center, Division of Basic Sciences,
RL   1124 Columbia St., Seattle, WA 98104, USA.
XX
DR   GenBank; U14101; Positions       1   10654.
XX
SQ   Sequence 10654 BP; 3669 A; 2717 C; 2036 G; 2232 T; 0 other;
     gatccggccg gatggcagct cgacgacggt agcaggccac catgcccgcc agcccgcagc        60
     taggatagca gcaacatcag cgtcttatta acgcgaacgg cggcactggc ccttagctga       120
     ccagctgcaa caacatcagc gacgcagtct ccaccagcag caacaacagc agcggcgctt       180
     gcgacagcag cagcagggaa tggttctgcc gcagtcgcct attgctgcct ataaagagca       240
     ttccttgcca attggctttc tgtacgacga cgatgatcct gcggacaaat ccacctttcc       300
     ggacgcctga gtattatggc gagcctgctg atcattgttt ctccgactcc ttacttgacc       360
     actggacaat catacaatca ccggcttttc acatctggaa gaaagaaacc tggattagta       420
     tttgcccttc agatttgtat gaaactgcat ttctggccaa ccggagtgtt tcctgcagac       480
     gacgctggac tgcgacgcac ttttttctac caacacagat gggacgcttg catcagatct       540
     gacgggccag actggccgat gcctggtaca cgatggcatc tccgcggcgg cgagatgtgc       600
     agcgacgctg aaagcaataa taattctttt actttgcagt atcaaaaatg agaagccaca       660
     tcacaattta catcagcaaa aattacacgt gatatctttt tcttttgcct aggagtagtg       720
     agacctgcta ccaaaatgac cagtaatacc ggctaacgga agcgagatat cgataatcat       780
     tctggcggta aaatagccag aacatcgata accagctgtg cattttccct tcgatttatc       840
     gaagtcaaat agcccgccta ggctatcgga ccggatcggc aagtcagtag tgattaaaaa       900
     tccggcagag gcgcctgtgc agcagctacc caaagtgaac acgacgaaac gcaacaacaa       960
     aatggacgga cataatggag atcaaagtga aggatgggca acagtgctat ctatctcctc      1020
     ggatgatagt aactccttgt cgtcgccgcc gtctataata gtttcatcgc tggacaccac      1080
     gccaacttcg cacgaaacca ccatagtaag aagaagccta tatcaaacaa atgctgacat      1140
     gaaatcttac gattttgaaa atattgtatt aaatgagaat aaaaatacca tattgccaga      1200
     ccctttattt gttgataaat gcgggagtac tgctaatacc acagaagcca atgaaaaaaa      1260
     gcctgccaat agccccttcc ccatttccat tagcaagaat tttagcactt cctcgccact      1320
     aacacatgta gacacgccta cacaagaaga tgacgccagt gcgttcaata cattgaaagc      1380
     agctaaaaca gctagaataa tttttcccac acacacacat ataaagccca ccaaaccctc      1440
     gcccccctcc aaagaattaa gcacaaactc agcactaaaa actctcagct acacagacaa      1500
     aataacagga acacagaaaa atctacccga caaaacacat gtagacacac ctacacaaga      1560
     tgacgacatt aatgcaacca aagcatcaaa aaccgctaaa ataatttcta cacagacaca      1620
     cctaggtgaa accaagccaa tacagcccgc caaagacccc tcaccccgca cccaaaagcc      1680
     tattgcacac aaagctgacg agacacttac ccacacagac aaactcacag catcacaaaa      1740
     cctcgttccc gccaaaacac atataaacac acccacacaa tataacgaca ctaatgcaac      1800
     caatgcatta aaaaccgcta aaataaattt ctcttcacac tcacaccaaa gtgaaatcaa      1860
     gccaacacag tccgccaaaa acatttcacc cctcacacaa aagcaattca caagcgaatc      1920
     agccgggaca cacacccata cagacaaaca caaaaacaca gcatcacaaa atctcttttc      1980
     cgccaaaaca cacattaact cacccacaca acataactac actagtgcag ccacagcatc      2040
     aaaaaccgct aaattaattc tctccccaca ctcacaccta agtgaaacca agccaacaca      2100
     gcccgcttta agcccctcgc ccctctccca gaagcaaata acaagcatag cagccaagac      2160
     actcacccac acaaacaaac acacagcatc acaaaacttt attcccgcca aaacacatat      2220
     aaacataccc acacaatata acgacaccaa tgcaaccaaa gcattaaaaa ccgcaaaagc      2280
     agcttctccc tcccacacat actcacgtca gacaaaacca ataaagtccg ccataaacgc      2340
     attgcatccc gcccaagaca caaacccaag cccagcaatc agtgctgtca cttacacaga      2400
     caaacccaca gctactcaga atatttttcc tgtcaaaact tttgcagagc tggttaggga      2460
     aaatgcaaaa cgcttaccaa ctccaatgca gaattcccat caagctaaaa atgactctgc      2520
     cgctctcgga cgccccccga ctgcagctag aaaaaatcta aataaaacac tgatttctcc      2580
     taaaactcct gggaagcgcc gtggggactg tcttgatgaa ggcctactac aaacctctaa      2640
     caaaaaggtt agaatacgcg atgacttctc tgacgatgat cttggggtca caaatctact      2700
     ctctgaaaca cccttattca aaagcaaagc agctatcaag atccggcaag actcgagaag      2760
     agattccctg cagaagtcag ccgaaatgga cacagctcca gcaattagtc cctcaaacac      2820
     agcagccgat tccgacctac cgccctggaa aactgttcca gctagcagaa aaccaccatc      2880
     aatcttcttg tccaatatac agcagattat cccgctaata gaaaaactaa actataaagc      2940
     cggggtaaat agctttacca ccaaatctga acttggcaac aatattagaa tccaggctaa      3000
     aacgatggac gcccacaatg caattcagaa tgttctcctt gaggcaaata ttcccctaca      3060
     ctcccaccag ccaaagagtg caaagggctt ccaaattgta attaggcacc tccaccagtc      3120
     aaccccgacc aaatggattg aaagccaact tcaagacatc ggtatagcta caaaatttat      3180
     cagggcaatg cagtttaggg acacgagaaa tcctatgcgc attcatgagg ttgaagttgt      3240
     acccaaggct gacggcagcc atctcaaggt cctgctacta aaatcccttg gaggtcaaac      3300
     ggtcaaggtt gaaaggaaac gggtatcgaa ggatcccaca caatgtcatc gctgccaatg      3360
     ttttgggcac acaaaaaatt attgtagaaa cccgtttaaa tgtatgaaat gtggccagct      3420
     gcacgccacg gtttcatgca ctaaacccaa aaaccttccg gctacttgtg caaactgcaa      3480
     tggaagccac gtaagcagct ataaaggatg tcccgctttc caagaagcaa agcaaagact      3540
     atctatcaac aaaattcaat ccctacactc acaacccacg caccttcaga ccccccgcaa      3600
     taaacatccc tacccaaaac ccacccacct tcagacgccc cgcaataagc agccctacac      3660
     acaccccctc cctcgcacat cagtaaacaa cacaaaacta cctgccaaaa gaatccaagg      3720
     aaagaagata tcgcaaagga atctatctat aaacaaacgc ttacacagaa tgaaaaaacc      3780
     gaggaaggag acaagcccgc cgacaactag caaaaaggtc ttggcctctc tagaagaaag      3840
     cagaaaaaac ccaaatagcg tcctaaaccc ggccaacacc catctcactc atttccgccc      3900
     acccccttta gcacaaaata ttcctaatga cgaacctaag gagctgagtg gggagcaata      3960
     ccttctaaat cgcattgaag ggatggaaaa gaagatcaac aaccttcttg aaatcgtcac      4020
     ccgcctacta agacaaggaa aagactgtcc aaagtctcca aaaaatcctt tccgagatcc      4080
     aatcttcgtg taaatgctct ttctagtaac atcagaaagt gacgtttcct atgactcggg      4140
     ctgacaacag ggacatcctt aaaatcgctt tctggaatgc tggtgggatt aacaataaaa      4200
     tagatgagct taagctgttc attctaaata ttgatgccca cataatcata gtcaccgaaa      4260
     ctagactaga caacaattct accaaactag agctgccagg atatttcaca tacttagccc      4320
     aaaatcctgt ctctagcaag agaggagggg tcgctactat agtaaacagc agtatccgac      4380
     acatggccct aaaaccgatc gaaaaagaat gcatacaaag cgccccaata gtcctgctgc      4440
     ctgaaaacaa cagacgcagc gaaatgatag taatagcatc tgtctactgt ccgccctcgc      4500
     taaggtggtt gccccaccac tttactgacg ttctcaattt tgcagagaaa actttaggag      4560
     ggcagaccaa gtttatccta tgtggcgact ggaatgcaaa acatagacaa tggggttgta      4620
     cacgcgcctg ccaacgtggc accgcactct acgaagcagt ccaagccgac tccactgcag      4680
     agatcattgc cactggctgt gctacacatt tcccacatga cacaagaaaa aacccgtcag      4740
     caatagattt ctccatttgc aaagggcttg gcaggtttga aaaaagaatt tcttcagggg      4800
     cggatctatc ctcagaccat cttcccatct tgttagagat aaacctagac acaaacaccc      4860
     tcttcttgca aaaacaaaac aacaatatac tcaagaaaaa tacaaacatc gagctgttta      4920
     agaaagttct agaaagaaag atactattaa acactgagat aagggtagca gaagatataa      4980
     atgacgccat aagcaccttt atgaaaaaca tcaaggactc ggctgcggaa tcaactccct      5040
     ccccaagaat acgtgacaac cccagaagaa gacataggca agccaacaga aacagtcata      5100
     ccctcgcact agacgaaaac acaagcagac tgcttgagga aaaacgcata ttaagtagag      5160
     ttttcaaagc taccaaaaat tacgaggaca aagctaaact aaaggcagct gaaaaccgac      5220
     taaaaaaagc gataaaaata ttgagagaaa acagaatcaa tgagcaagtt gaaggaatag      5280
     atacaagtaa cccggacaga atgagaaaaa tgtggaaact gctagatgaa gggaaaagga      5340
     caaatcagcc taattttccc ctcaaattag aaacccaaaa aggacccaaa tggacaaaaa      5400
     cgattaagga gacaacagaa acatttgtct cccacttgga aggaagattt aagccaaaca      5460
     ataatgtacc tgattaccac atagatagag tcaatactgg actaagaata attaaggaaa      5520
     gcatgctaac tgaacgacat aatctgaaca aaaaccccca taaccaacct attactctaa      5580
     aggaattaaa tgacgaaata aaaaacttaa agaatagtaa agcaccggga aaagacctta      5640
     taacaaacca gctaataaaa accctaccga ctaaagctac cctttacctt atcctaatct      5700
     ataactccat acttagacta ggatactacc cagaagcctg gaaacatgcg caggtaaaaa      5760
     tgattctcaa gccagggaaa agtgcaaacg agccaaggtc atataggccg attagcctac      5820
     tctcgggact ctcaaaaatc tttgaaagac tactcttaaa aagacttttt aaggtagatt      5880
     tattcaaaaa agctattcct ctgcaccaat ttggctttag aaaagaacac ggatcggagc      5940
     agcaaatagc cagggtcacc cagttcattc ttgaggcctt cgagagaaag gaatactgct      6000
     ccgcggtctt ccttgacatc tctgaggctt tcgacagggt atggcacgaa ggccttttac      6060
     ttaaattagc taagatccta ccttacaact tgtacattat actggagagc tacctaacaa      6120
     atagaacgtt cgaagttaaa gaccaagctg gagagacttc gagaacagga caaattggtg      6180
     ctggtgtgcc tcaaggaagc aatcttggac cactactcta ctctatcttc tcctcagaca      6240
     tgccccttcc atatatctac cgcccctcac caacagaaag aatcatgctc tcaacatacg      6300
     cagacgacac tatagtcctc agctcagaca cactagcaac tgccgctaca agaaacaacg      6360
     aaaactacct caagtcattc tcggactggg cggacaaatg gggtatatca gtaaacgctg      6420
     ctaaaaccgg acatgtcatt tttacattaa aaaacgactt acctacaagt ctaaggacta      6480
     tgaagatcaa gggtcaagta ataaagattg aaagcaaaca atcatacctt ggcgtaatcc      6540
     ttgacagcaa gctaaccctc agctcccacg tcacaaagct gatgggcaaa tacactacag      6600
     cctacagaaa aatgacatgg attctaaaca gaagaagcaa actccctacc aagactaaaa      6660
     tgctgatcct taagtcagtc ctttcaccaa tatggcagta tgccatagca gcttggggtc      6720
     cccttgtgac ggatgcacag ataagacgga tccaagtcga ggaaaatagg aaaatgagag      6780
     acatatgcag agcgggtaga tacacgagca accaaactat aagggaccgc tatggaatca      6840
     aaacagtaga agaattctat caacaggcac tccacaggtt ctcagaaaca ataaaatctc      6900
     acccaaatat agctgtacgc aggatattca caaggcacta tatcccgaac agactagaaa      6960
     gaagcaggca gaggtacttg aaaatgacaa atgaacacat cacgcaaaaa cagactggac      7020
     aaacactctc acctaaactc ctaaaaatcc ctgatctaaa tgactgcaga acccttaaaa      7080
     agcggaatga aagagataaa ataaggcaaa cccatctaat tgaactcccc accctgctga      7140
     gactagagga agaagaggaa gagcttagaa gaataaaaaa acaggaagag agggaaagaa      7200
     gggaaaagga aacccaaaag tggcctccag acagatggtg tgaattagaa attaacctat      7260
     ataataagca atatagaagg ggcgatctaa ccaggcagga aatcatacaa aaatttagag      7320
     gacaaccact aaatgtacag aggataattt tacccgacta taaaggagac caggaacaca      7380
     attaaaagta aatcatggga aagcagggga aaaaaaacag aagtaacaaa atggcggaag      7440
     gggtggcaaa atatatataa aaataagaaa agatagaaat aaaaaggcta aaggctcact      7500
     tacaggttaa ttcaaaaggg aaacgtgctt acatatctaa tggtaaaaac taacttataa      7560
     cacctactgg atgacatagt gaggatgcca caggttgcgc acttgaatca cgctttcctg      7620
     gcgagattgt taaggcatca ccgggatccc gtctctcttt cctaactgga ggactcatgc      7680
     ctgaaatctt ttccgcttca ccggcacctg atggccatat ctgctactgc gccttgcgtc      7740
     cacggacgct ccttcctgaa agaaagagaa tttgttttag ttttcctttc tcttcttaaa      7800
     aatataacaa aaacagcagc agtagccgac caacaacata cttagcttac caaggcagca      7860
     gcaatgatac caacagaagc cctacagtgt gctgaacaat atgccgccca cgcccaccac      7920
     ttctggaact caggaatggg gggtacggaa tgccggaaac tggaggattc gcctcaaatg      7980
     ttacgcttac atctttgagc aaatcgcctg cctcctcgtc taacggcccg gcgtcttggt      8040
     acgcccagaa gtagcagcgg tagcaggatt agcagcctcc acagagatat gttcatccca      8100
     gcatcagtcc agttggcatt gtgatgccgc cgtagcgtac gccctcagag acccgactgg      8160
     aatcccagga caagagacgg cagcacgcct gggcttaggc gcgggacaac atgcagagat      8220
     tcgtcaatga gaatggcggc actggaatca cctttcagct gagcgggata atgagtcggc      8280
     aacgcaccgc actatcagca gcaataacaa catcggcaga tgacctggaa gaaaggaaaa      8340
     aacatgtatc agtcttttct tttctttttt tttcccatta gcatgcgttt ttaaattcca      8400
     ttcctgaaaa ccggcgtttt cctgtaaaag acactggacg gcggcgtttg ttttaaatgc      8460
     aaagattgga tgcttgcatc agggctgacg tccttgaata gccgatgcct tgtaattgcc      8520
     tgcatagccg cggaggtcct gatgacggat gctggcctgt atttggccac cactccgatg      8580
     ccatgacagc agcaacagca gcggtttttg caaatgagag ggatcaggag gcggcaacac      8640
     attcacccgt agcagcaaca acaagcagtg gtagcatcag cagggagtct tctcgccaca      8700
     atagccattt ggaaatttct cgacgacccg acttcctgct tggcccatgg tcaatcacac      8760
     tggaccagtt aacagcggcg ttttaccctg gaagaaagaa aacttgtatt attcattccc      8820
     ttttctctca cagttgggta tttaagtgca ttcctggcca acctagcgtg tctcctggca      8880
     atgacgtcgg actcaacgca tgcttccctt ccgacacagt aaggatgttc gcatctgggc      8940
     tgacgggcca ggccggtccg ttgccataca tgctagcgtt tccgcggcgg cgtagtgaac      9000
     atcaaaccgt ataatggcga agacgacgat gatccggccg gatggcagct cgacgacggt      9060
     agcaggccac catgcccgcc agcccgcagc taggatagca gcaacatcag cgtcttatta      9120
     acgcgaacgg cggcactggc ccttagctga ccagctgcaa caacatcagc gacgcagtct      9180
     ccaccagcag caacaacagc agcggcgctt gcgacagcag cagcagggaa tggttctgcc      9240
     gcagtcgcct attgctgcct ataaagagca ttccttgcca attggctttc tgtacgacga      9300
     cgatgatcct gcggacaaat ccacctttcc ggacgcctga gtattatggc gagcctgctg      9360
     atcattgttt ctccgactcc ttacttgacc actggacaat catacaatca ccggcttttc      9420
     acatctggaa gaaagaaacc tggattagta tttgcccttc agatttgtat gaaactgcat      9480
     ttctggccaa ccggagtgtt tcctgcagac gacgctggac tgcgacgcac ttttttctac      9540
     caacacagat gggacgcttg catcagatct gacgggccag actggccgat gcctggtaca      9600
     cgatggcatc tccgcggcgg cgagatgtgc agcgacgctg aaagcaataa taattctttt      9660
     actttgcagt atcaaaaatg agaagccaca tcacaattta catcagcaaa aattacacgt      9720
     gatatctttt tcttttgcct aggagtagtg agacctgcta ccaaaatgac cagtaatacc      9780
     ggctaacgga agcgagatat cgataatcat tctggcggta aaatagccag aacatcgata      9840
     accagctgtg cattttccct tcgatttatc gaagtcaaat agcccgccta ggctatcgga      9900
     ccggatcggc aagtcagtag tgattaaaaa tccggcagag gcgcctgtgc agcagctacc      9960
     caaagtgaac acgacgaaac gcaacaacaa aatggacgga cataatggag atcaaagtga     10020
     aggatgggca acagtgctat ctatctcctc ggatgatagt aactccttgt cgtcgctgca     10080
     tatataaaat aataaatttc ttaaaataat ttcatcgctg gattcctgcg ccaccataaa     10140
     ttacttatag aatacactta acactgtacc cactaatgct aaaaattttc ttatacaatt     10200
     ttactttaaa gctaaaacta cttaaactat ggcgcgtaaa acggccgtca aaaatatcca     10260
     aaaattgtac ttgccataaa caaattctaa cataatgtaa atcctaaatc gtaaaatcat     10320
     ggcgaacata accgccgcca agcaaatcaa aaaatgttcc tagaaattgt aaatcttaaa     10380
     cctacttctc taactaaagc gcgcacaact gccgctgatc cgaaattgta aaatgccata     10440
     aattgtaact atatatttta taaaaaaaat cagagtacaa taaaatgaca gcgccgaaag     10500
     gcactgaaaa tatttaaaaa aaaaaaaaac tgccgctgat ccgaaattgt aaaatgccat     10560
     aaattgtaac tatatatttt ataaaaaaaa tcagagtaca ataaaatgac agcgccgaaa     10620
     ggcactgaaa atatttaaaa aaaaaaaaaa aaaa                                 10654
//
ID   T412LTR     repbase; DNA   ; DRO   ; 481 BP.
XX
AC   M30371;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   D.melanogaster extrachromosomal transposon 412, 5' long terminal
DE   direct repeat.
XX
KW   transposon; DROTN412C; T412LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-481
RA   Shepherd M.B., Finnegan J.D.;
RT   "Structure of circular copies of the 412 transposable element
RT   present in Drosophila melanogaster tissue culture cells, and
RT   isolation of a free 412 long terminal repeat.";
RL   J. Mol. Biol 180, 21-40 (1984).
XX
DR   GenBank; M30371; Positions       1     481.
XX
SQ   Sequence 481 BP; 159 A; 102 C; 93 G; 127 T; 0 other;
     tgtagtatgt gcctatgcaa tattaagaac aattaaataa aatagcatat taacttatgg        60
     cagcactttg ttgctatgtt tatgtttatg tttatgcacg cagttaggcc agggcggatg       120
     taacatgatc acccactcga aggcaaaaag tataagtgca tggtcagcat tcacacgccg       180
     accaaataca tattacatac gtacatacat atctcgctct cccgataagc ctagatatat       240
     aagatataca taagaacgcc gctccgctgc tggcgtaccc ggcagcgcag ctacgcggat       300
     tagcctaagt ccaaatatat taaaaactgt aaaatcggag agactctgta gacgttgagc       360
     ggacagaacc atttctgcct actctaaaat caaaagaaga aattgaataa atatatgtca       420
     gcccgacggc tgccttcaac ttaaaacgga cttgtgttct gaattggagt tcatcattac       480
     a                                                                       481
//
ID   TRANSIB3    repbase; DNA   ; DRO   ; 1944 BP.
XX
AC   .
XX
DT   01-AUG-2000 (Rel. 4.3, Created)
DT   01-AUG-2000 (Rel. 4.3, Last updated, Version 1)
XX
DE   TRANSIB3 is a DNA transposon, a partial consensus sequence.
XX
KW   DNA transposon; transposase; TRANSIB family; TRANSIB3.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1944
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB3.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB3 belongs to the TRANSIB family of DNA transposons.
CC   It has generated duplications of the CNNCG target
CC   sites upon its integration into the genome. TRANSIB3 has 43-bp
CC   terminal inverted repeats and it encodes putative transposase
CC   which is not similar to any known transposases.
CC   There are ~10 copies of TRANSIB3 which are ~95% identical to the
CC   consensus sequence. It is likely that TRANSIB3 lost its activity
CC   several million years ago.
CC   TRANSIB3 encodes protein involved in transposition:
CC   KNYVFVDEYLFGHAELLDIWSNNSRSEDAVRQHIFKKIGQNNLNECCISLLNKKVKSFFDYIRK
CC   HLPGCNRSLDRLKKKHFKWLASSISIIADCKTPKLVYEKANDRLKRKLASDLFGPENNTSVPLL
CC   LHAASVSSKKGNEKDMAVVLKAAGNSDNINNIKRKMFSSEPTQMSVDNALAFLFENGFTKSQYI
CC   NLKRNTKVHGFDIYPSYPDVLNAKLKLRPNGIEYFENKAQVKLQQLLNHTTSRILEMQYETFKA
CC   NTNSIECQLIFSYGYNGSTGQSIYKQRYEEIGAVYDGSLFVTTIVPLKLVDNEQKIIWINRSPQ
CC   SIRFCRPLKIEFIKETRELILAEKENLDTQTRNLHIYLHKINNINIFVKYVGQMTLIDGKNLHL
CC   NMILFYFIFYI
CC   This protein is 39% (first 250aa) and 41% (first 290aa) identical
CC   with those in TRANSIB1 and TRANSIB2, respectively. There is
CC   only partial ~60% nucleotide identity between TRANSIB3 and
CC   TRANSIB2 or TRANSIB1.
XX
SQ   Sequence 1944 BP; 696 A; 285 C; 324 G; 639 T; 0 other;
     cacactggtt ttttatgtgt ttttttttgg cagaaagtca aaaaaaaata ttttaacgga        60
     ataaaaaaat gtatggtttc tttatattta ggatagtctt attagataaa aagtcgattt       120
     ttactttttt acgcaaaact ggcttatcgt cgacctctca aagacagctg attgtcgata       180
     acatgcgtaa gacaaaattg cggcaaatca ttttgcaaca tttgtggttt atatttcctc       240
     agagaattaa aaaagttcaa agttttgtca tggaaaacag tagcacaggt atgtagattt       300
     gtagttcact aacatttttg tgtatgttat atgtttttgt gtagttgtat cgtgttttgt       360
     ttatgtgcct tttttacagt caacttaaca aatgtagctg tgtttcgtgg aatataactt       420
     ggaaaccact tcaaaaaaat tttaacggca agttattaac taacatgtgt ataatattat       480
     acaactagtt tcatatgctc ctttttgttc ctttttgaaa aaattacgtt tttgtagatg       540
     aatacttgtt tgggcatgca gagctgctag acatttggag caacaatagt cgctctgagg       600
     atgcagttag gcagcatata tttaaaaaaa ttggtcagaa taatttaaat gaatgttgta       660
     tttcattgtt aaataaaaaa gttaagtcct tctttgatta cataaggaaa catttgccag       720
     gttgcaatag atcgttggac aggttgaaga aaaaacactt caaatggctg gcatctagta       780
     ttagtataat cgctgattgc aaaactccaa aactagttta tgaaaaggct aatgaccgac       840
     ttaaacgaaa attagcttcg gaccttttcg gacctgaaaa taatacttct gtaccattac       900
     tcttgcatgc tgcttcagtt tcgtctaaaa aaggaaatga aaaggacatg gcagttgtat       960
     taaaagcagc tggtaacagc gataatatca ataatataaa aagaaaaatg ttctcttctg      1020
     agcccacaca aatgtccgtc gacaatgcat tagccttttt atttgaaaac ggatttacaa      1080
     aaagccaata catcaattta aaacggaata caaaagtaca cggctttgat atttacccat      1140
     catatcctga tgttcttaat gctaaactaa agcttagacc aaatggcatc gagtattttg      1200
     agaataaggc gcaagttaag ttacaacaac tcttaaacca cacaacttcg cggattcttg      1260
     aaatgcagta tgaaactttc aaagcaaata ccaactcgat agaatgccaa ttaatattta      1320
     gctatggata taatggatca actggtcaga gtatttataa gcaacgttat gaggaaatcg      1380
     gtgctgtata tgatggatcg ctgtttgtta ctacaattgt gccattaaaa ttagtagaca      1440
     atgaacaaaa aataatttgg atcaacagat cgccacaatc tatacggttt tgtcgtcctt      1500
     taaaaattga atttattaag gaaactcgag agcttatatt agcagaaaaa gaaaacttgg      1560
     atacccagac tcgtaatctg cacatatatt tgcataaaat aaacaacatt aatatatttg      1620
     taaaatatgt cggtcaaatg acactaatag acggtaaaaa tttacatctt aatatgattt      1680
     tattttattt tattttctat atataatatc aataaaatat ttaattaaat acagatacaa      1740
     aaatattttt tttttggtaa ggtaaatatt tttatggcat atcggccaga tcgtttatat      1800
     ggcagctata tgaaagttga ccaaatcact tgaaattttg tgaatcatct tgggggaagt      1860
     aaagagtaac acaaaccaaa tttggtgaag ataggtcatc atttcgaatt tctgccaaaa      1920
     aaaaacacat aaaaaaccac agtg                                             1944
//
ID   FW_DM       repbase; DNA   ; DRO   ; 3520 BP.
XX
AC   M17214;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.melanogaster Fw repetitive element.
XX
KW   Repetitive element; DMFW; FW_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3520
RA   Di Nocera P.P., Casari G.;
RT   "Related polypeptides are encoded by Drosophila F elements, I
RT   factors, and mammalian L1 sequences.";
RL   Proc. Natl. Acad. Sci. U.S.A 84, 5843-5847 (1987).
XX
DR   GenBank; M17214; Positions       1    3520.
XX
SQ   Sequence 3520 BP; 1203 A; 940 C; 615 G; 762 T; 0 other;
     tgaaccagaa aacaagcctc ctagaaaaaa cgaggttcac ccaatttaca aactccagct        60
     ccttttgcac cgtaggatca cggtagaaga gccgcacaaa cgcaacgctc ctgtacaatg       120
     tacaaactgc caagagtatg gccacacgag gtcatattgt acacttgccc cggtgtgcgt       180
     agtctgtgga gatctccacg actccaaaca gtgtcaaatt aacaaagaaa atgcatgcga       240
     gaaaaaatgt aataactgcg ggggcaatca cacagcaaac tacagaggct gtccaatcta       300
     caaagagctg aaaatccgtc ttcacaaaag aatgaacacg gcgcgggtac acaaggatca       360
     gctaccctga taccatcaga gacaaatcct gaagtaattt tctcgaaagc agctagtttc       420
     gctccctggc ctacattcaa cactaacaaa gacaacattt gctaacgttt taaaatcagg       480
     tatgacgcct ccaacccaaa actcccgaac tccacatgaa gtgcacacaa aattagacac       540
     acaacaaaac tatcacccag ctgcgcagca ggaaacaaaa actgaagcta tgatgcaagc       600
     cttacaacag agcatgatgg aatttatgac atttatgaag accaccattc aagacatgat       660
     gcgtaatcaa aaccttttga tacaaatgct tgtagcccaa caatcaaata aataatggct       720
     accttacgca tagctacgtg gaacgccaat ggcgtctcac agcgcaaact tgagctagct       780
     caattcctac atgagaagca tatcgacgta atgcttcttt cggaaactca tctcacaagc       840
     aaatacaatt ttcaaataag agactaccat ttctacggta caaatcatcc cgacggaaaa       900
     gcacacggtg gcaccgccat actcataagg aaccgtatga agcaccactt ttacaaagaa       960
     tttgcggaaa atcatcttca ggccacatct atcaacattc agctggatga caacactctc      1020
     cttacactag cggccgtata ctgccccccc cgtttcacag tattagaagc tcaattcctg      1080
     gatttcttcc aagcactagg gccacacttc attgcagcag gcgactacaa cgctaaacat      1140
     actcactggg gatcgcgact tgtgaaccca aaaggaaaac agctttataa gacgataata      1200
     aaagccacta ataaacttga ccatgtttcc cccgggagtc ctacatactg gccatcagac      1260
     ctcaataagc tgccagacct gatcgacttc gcagttacga aaaatatttc ccgcagtttg      1320
     gttaaagctg aatgtctgcc ggatctctca tctgatcact cgcctgtact aattcacctc      1380
     cgccgatacg cagaaaacgt gaaaccacca accagattga cctctagcaa aacaaactgg      1440
     ctcaggtata aaaaatatat aagttcacat attgagctaa gcccaaaact caatactgaa      1500
     tctgatatag agagctgcac gtgtgcattg caatccatcc ttactgcagc agctcttact      1560
     gcaacaccca aaataacaaa taatacaatt aattcaaaaa agaccaacgt acaaatcgag      1620
     caactcgtcc acgtaaaacg tcgcttacgc agagaatggc aatcttccag atccccaact      1680
     gcaaaacaaa agctaaaagt agccacacgg aaactggcca acgctctgaa acaagaagag      1740
     gacgacgatc agcgccgata catagagcaa ctcacaccaa caggcacaaa acaaaagtca      1800
     ctgtggcgag cccactcaac tcttcgccca ccgactgaaa ccgttttgcc gataaagaat      1860
     tcatcaggtg gctgggcccg tagtgatgaa gacagagcca acacatttgc cgctcaccta      1920
     caaaatgtgt tcacgccaaa ccaggctact agcacattcg cgctaccgtc ctatcccgta      1980
     aaccgccatc agcaacacac cccaattgtg tttcgtccta aagaaataac taaaataatc      2040
     aaagacaatc tcagcccgaa aaaatccccc ggctacgacc ttataacacc ggaaatgatc      2100
     atccagctgc cacattctgc agttcgctac ataaccaagc tctttaatgc catcaccaaa      2160
     cttggttact ttccacaacg atggaagatg atgaagatca taatgattcc aaagcctggt      2220
     aagaaccaca cagtcgcttc atcttacaga ccaataagtc tactctcatg catttcgaaa      2280
     ctattcgaaa aatgcctgct gatccgactt aatcaacatc agacatacca caatataatc      2340
     ccagcccacc aatttggatt tcgcgaaagc cacggaacca ttgaacaggt gaatcgtatt      2400
     acaacggaaa taagaactgc atttgaatat cgcgaatact gtacagcagt atttttagac      2460
     gtatcccaag cattcgacaa agtctggctc gacggcctaa tgtttaaaat taaaatatcc      2520
     ctacccgaaa gcacacacaa acttctaaag tcttacctct atgacagaaa gtttgcagtg      2580
     cggtgcaaca ctgccacttc cactgttcat acaattgagg ctggagtccc ccaaggcagc      2640
     gttcttgggc caaccttata cctcatctat acagccgaca tccctacaaa tagtcgctta      2700
     acggtatcca catttgccga cgatacagct atccttagcc gttcaaggtc ccctatccaa      2760
     gctacagcac agttggcact gtacctcatc gacattaaga agtggctctc tgactggcga      2820
     ataaaagtaa acgagcaaaa atgcaagcac gtgacgttta cgctaaacag acaagactgt      2880
     cctccgctct tgttgaacag cataccactc ccgaaagcag acgaggtaac gtacctagga      2940
     gtacacctag acagaagact cacatggcgc aggcacattg aagccaaaaa aacccaactt      3000
     aaactcaaag ccaacaactt acactggctc atcaactctg gttctccgct cagcctagat      3060
     cacaaggtct tgctctacaa ttctatattg aaaccaatct ggacctatgg ctcacagtta      3120
     tggggcaatg ccagcaacag caatattgac atcattcagc gagcacaatc aaagattctg      3180
     agaaccatca ctggggcacc gtggtacgtt cggagtgaaa acatccaaag agacttaaat      3240
     atcccatcag ttaccaacgc aatcacggaa cttaaggaaa aatacctata gcaagcttca      3300
     cacgcacccc aaccacctag cgcgaggtct aatccagctc agcagccgtt cccgtctccg      3360
     gcgaaaggac ctaccaaccc agcgaataaa ttattaggcc gtttaaacat agacagttgg      3420
     aaaaataata caactgttca aaaaatactt gttatagtta agatttttaa acttattgtt      3480
     agttcttata caagaagatt caataaataa aaagcaaagt                            3520
//
ID   ROVER_DM    repbase; DNA   ; DRO   ; 7318 BP.
XX
AC   AF492764;
XX
DT   13-SEP-2004 (Rel. 9.08, Created)
DT   13-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Drosophila melanogaster transposon rover, complete sequence.
XX
KW   ROVER_DM; env domain; gag domain; pol domain; transposon.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RA   Kaminker S.J., Kronmiller A.B., Bergman C., Carlson J.,
RA   Lewis E.S., Rubin G., Ashburner M., Celniker E.S.;
RT   "Complete sequence of rover transposable element on 3R.";
RL   Unpublished.
XX
DR   Genbank; AF492764; Positions       1    7318.
XX
SQ   Sequence 7318 BP; 2989 A; 1603 C; 975 G; 1751 T; 0 other;
     agtaacataa tatgcttctc atattacgtt tacatactta cactaattgt acatacaatc        60
     ttgcacatgc ataaacacat gaaaccagtt tacattttta cttacactta agcgcataat       120
     ttgttgtgca tccataccgt tatttttccg ttcttttttg tacacatata ctgattagac       180
     attcccgttt ctcgcgactc acttcgagcc gatcaaaaac tctgtacagt cagtcttaag       240
     ccgacaacga agaaataaag atctaaacta aaaaatacct cgtgttgatt ctgaaacttc       300
     tttaaaggcg ttgatcttag tcaaacgacg gatcatttgt tcgactcgaa tagtaaaata       360
     cgtaagtggc gcagtcggta ggataataca ttgttgatgc gatagtaacc ctattcaatt       420
     cttcaattat tatccacaaa agaactaacg cagtcgcgtc gtgctaagtg gaaagtgtta       480
     accaatggta ctcaatccca taaagtgacc acgaagtgaa ataacttaaa attacaaaaa       540
     ttttaagaag acgcctttga attcgctgag tagtaaatcc acaaaaggtt actcaaacca       600
     aagcgaaaca gctaagagcg caacacaaca aacttaaatt aaaaacttac aaataagtga       660
     ataacagaaa tattacgaac aaataagtgc gaaaattcaa caaaacctaa gctaaagaac       720
     tataactaag tgaataacaa acattataag tgaattaaat taataagtga acaacacaac       780
     aaacttaaat taaaaactta caaataagtg aataacagaa atattacgaa caaataagtg       840
     cgaaaattca acaaaaccta agctaaagaa ctataactaa gtgaataaca aacattataa       900
     gtgaattaaa ttaataagtg aacaacacaa caaacttaaa ttaaaaactt acaaataagt       960
     gaataacaga aatattacga acaaataagt gcgaaaattc aacaaaacct aagctaaaga      1020
     actataacta agtgaataac aaacattata agtgaattaa attaataaat gaacaaacac      1080
     aaacacaaag ctcagacctg gaatacaaac taatagtgga aatcaagaac ccatagtgaa      1140
     aaccaaaacc ctatccaaaa cataaaccta cagtaaaaac ttgaacttta tcgaaaaacg      1200
     aaacctatcc gaaactgcaa accttaccca gaacgtgaac cttacctaaa acattaaata      1260
     acaataaata caacaacaac aatggcaaca gcaagcccta taatactatc cgactcaaat      1320
     atgagtcagg tcgagagaca gataaatgct gtcgaaatct tcaatggaga cccgaatact      1380
     ctacatacct ttataactcg catcgacttc attctggcct tataccaaac tactgacgaa      1440
     aggcagaagt tgataattta tggacacatc gaacgcaata tcagcggcga cgtcatccgt      1500
     actctcggga ccaacaactt taccagctgg attgaactaa ggaccagatt gatcctatat      1560
     tacaaacccc aggcaccgag tcatcaactt ttggaggatt ttcggaacat tcaatacaaa      1620
     ggcaacatca ggcagtttct ggaggaagcc gagaaaagac gacaagtttt aatgagtaag      1680
     ttagaactag aaaataactc agctgaaacc gccttattta ccagacttat tcaagatagc      1740
     atagaaaact tgatcctaaa actccctaac catattcatc taagaatagt taactgccaa      1800
     atccccgatt taagatccct tattaatatc ttacaagaaa agggtctata tgaacctcaa      1860
     acattaaaca aagataactt taagccagct cctaattcta ataggacgcc aaataactta      1920
     ccaaatagac aagttaatgg ccaaaataaa cctataacac cttttcaacc gtaccataac      1980
     aacgtctttc aaccctatta tccaccatac ccatacgcac caatccatac acccaggccc      2040
     aatcaaaccc cttttcccca atatcaacca agaccaacct acccacaacc taacataccc      2100
     agaccgaatc ctgtctttaa tcgacagaat atcttcgacc aaaatcgttt cggacctaat      2160
     caaacttaca caccgaataa cttccctcca actgggaaca cacaaaccaa caacccggta      2220
     aaaagacaac gaccatcaga cagcggacag actaaaatga gcatagaaga actaagatac      2280
     caagaaatgg tatcaaacca acccgaatac ccttaccatt attactatcc atactaccca      2340
     gataacttcc aaccacaacc atatccttat caaatgagtt atatcccaga cccaactcaa      2400
     atccctttcg aacaagatca tgacacttcg gacaaaacac aacaagaaca gacagcacca      2460
     aacgatgacg aatcagacaa taccaaagaa gcagaaaatt ttcggctagt tgccccggat      2520
     caaaccaata tataattatt aaacataatg acatagactt aaagtgccta attgacactg      2580
     gatccaccat aaacatgctt acttggaaca ttttcgaaac acctatacaa caaaccaacc      2640
     acctaattca tacaagtaat ggctcggtaa ctattaacga gaccaccact ataccaccca      2700
     ataactactt tcctattgct caggagtttc taattcacaa attctcagat cattatgata      2760
     tgctgattgg acgcaaattg ttgtctaaag ctaaagccat aatagattat caaaagaaaa      2820
     ctgccaccct cttcaacaaa gtctataaaa taaaagacac tgaaaaactt acagaccaaa      2880
     atcatgctca agtagactct tcgttcccac aagaccctac ctttttagaa acctccacac      2940
     ttcaggagaa tctgttccga ctaaaccatt taaatgcaga agaaaaatac aaattaacaa      3000
     acttactgac aagatttaaa gacattcagt ttcacgaggg cgacaaactt agcttcacaa      3060
     accaagaaaa acatacaatt aataccacac ataatattcc agtttactct aaaatgtata      3120
     gcttccaaca atcatacgaa caagaagtag aaagacaaat tcaagaaatg ttagaacaag      3180
     gcatcattcg agaaagcagc tcaccgtact gcagccccat ctgggtagta ccaaaaaaat      3240
     tagatgcttc cggacagcag aaacttcgaa tagtcataga ctacaggaag ctgaatgaaa      3300
     taacaataaa tgaccgatac cctatgccaa atatagacga aatactagga aaattaggga      3360
     ggtctaatta ctttaccacc atagacctgg caaaaggctt ccatcaaata gagatggatt      3420
     cagaatcaat agccaaaacg gctttctcta ctaaatacgg acattacgaa tatactagaa      3480
     tgccatttgg gcttaaaaac gccccagcta ccttccaacg ctgcatgaat aacctacttc      3540
     gtccgctttt aaataaaaat tgtttagtat atctagacga tatcattgtc ttttctacct      3600
     ctctagagga acaccttcaa tcccttgaag cagtcttcga gaaattatct caagccaacc      3660
     ttaaactaca gctagataaa tgtgaattcc taagacaaga aactaccttt ctaggacacg      3720
     ttatcactaa agacggaatt aaaccaaatc ccgaaaaaat caaagctata caagattacc      3780
     cacttccatc taaacctaaa gaaattaaag cattccttgg aatcacagga tactacagga      3840
     aattcatacc caacttctct gacatagcga aaccactgac taaatgtctc aaaaagggag      3900
     taaaaataga tacaaaacat aaagaatata tagaagcatt tcaaaaatta aaattactta      3960
     tttccgaaga ccccatatta aaaataccaa attttgaaag aaaatttgta ttaacaactg      4020
     acgcaagcaa tgtagcatta ggtgctgttc tatctcaaga tggacatccc attagctaca      4080
     ttagcaggac cctaaacgaa catgaagtta attacagtgc tatagaaaaa gaactactag      4140
     caatagtttg ggccacaaag acctttagac actacctgtt aggacgacat tgcgaaatag      4200
     cttctgacca tcaaccattg tgctggctac acaaattaaa agaacctaac tcaaagctga      4260
     ctaggtggaa gattagatta tccgagtacg acttcgatat aaaatatatc aaaggaaagg      4320
     aaaaccatgt cgcagacgca ctgtctagaa tcaaaataga acaagcattt ttcggagaat      4380
     ctacgcaaca tagcgcagaa gaagataata gcgacttaat agggttgtcc gaaaaagcca      4440
     ttaattacca taaaagacaa attattttct caaaaggtcc caatagtagt atagaacacg      4500
     aaacttattt caaaaaacaa atcatacaca tttcctacaa agaaatgacc ctagaagcag      4560
     ccaaacaata tctactcaat cacttttgct caaagaatag cgctctttac atcgaaagcg      4620
     atgcagactt cgaaatgatc caaaatgcat acacaacaac aatgaatccg aaatgtacaa      4680
     aaattttccg aagcctcgtt ttattaaaaa acatccctac ttatgcaagt tttaaggaac      4740
     taattctaaa cacccacgaa aagctcttac accccggaat tcaaaaaact gtaaaactct      4800
     ttagtgagaa ttattacttc cccaatagcc aactccttat ccagaatata atcaacgaat      4860
     gtcaagtctg caacctagcc aaaacagaac accgtaacac ggaaatgcca atgaaaatta      4920
     cccctaaacc cgaacattgt cgtgataagt tcgtaataga catctattct tccgaaggaa      4980
     accattatct gagctgtatc gatatttact ctaaattcgc cacccttgaa cagattaaga      5040
     caaaagactg ggtagaatgc aaaaatgcct taatgcgcat atttaatcaa ttagggaaac      5100
     ctaaacttct caaagcagat cgagatggtg attctccagc ctagccctca aacgttggct      5160
     cgaaaccgaa gaagtagagt tacaacttaa tactacaaaa acaggtgcgc tgacatagag      5220
     agactccaca aaactataaa cgaaaaaatc cgcatcataa aaaactctga cgacaacgag      5280
     accaaattaa gtaaaataga aacaatcctt tacatttaca accacaagac caaacacgat      5340
     actaccggac aaacccctgc tcacatattc atttacgccg gacaacctaa cttagataca      5400
     caaaacaata aagagaaaaa aaattaacga aataaataag aatagaactg aatataatgt      5460
     cgacaccaga tacagaaaag gaccattaca aaaaggaaaa ttagaagccc ctttcaaatt      5520
     aacaaagaac gtcgaacaaa ccgacgaaga ccattacaaa attactaaca gaaacagaga      5580
     gacacattac tataagaccc aatttaaaaa acagaagaaa actaatcaac tccccatttt      5640
     acaggcccct tgttcaccat aatacttttt cttactctga caaacctatt caaatccctt      5700
     cagaatacga acaccactgt ctccgcataa acctcttgga tatagacaac ctaactcact      5760
     attttaacac taaagtaacc aactatacac atatccccca aattaaactt ctacacaata      5820
     aaatgttaag ggaacttaac gctataacgt tacaccagac aaatagacag aaacgcggac      5880
     taatcaacat aatgggatct gcatttaaat accttttcgg gacactagac aataacgacc      5940
     ggatacaaat tcataaccaa ttagagtccg cgacaaacaa ctcaattaac atacacgaaa      6000
     tgagcgacat aattcaactt atcaatagta acatgcaaaa gatcaaagaa tttgaagacg      6060
     aacataataa cagagaacaa atgctatacg aactaataca atttaccgaa tacattgaag      6120
     acatcgcaat gggaatgcaa ctctcacgac taggactgtt taacccaaaa ttacttaact      6180
     atgacaaatt agaaaacgtt gacagtagca acatactaca gactaaaacc tcaacctgga      6240
     tcaacactaa ccaactactt atcatagctc atatccctac taaacaaaaa accattcata      6300
     ctattaacat aataccctat ccagataata atggctatca acttgatcat atagacaaag      6360
     acacttattt cgaagaacaa gataaaattt ataaccagaa ctatcaagaa attaacaacg      6420
     aatgtatcaa aaatattatt aagagaacaa atccaatatg taactttgtc cctataacag      6480
     tcgaacaaat aattaagtat gtagaaccaa atagtatcat cacttggaat ctaaacaaca      6540
     ctatcataga acaaaaattg ccaagaaata aataaaaatg taacggttaa cggcaacaaa      6600
     ataataacaa taaaacaatg taaaatcaaa ataggaaaca taatacttaa cgaaaacaag      6660
     ctaaaaaccc cgagataaac cttaccccat tgtacacacc cttaagccta ataaaaataa      6720
     aaccaataga acataaggac attgtacaat taatatcaaa taataatatc acagtttgta      6780
     tagtagtatc aatcataagc ctcacatctt gtattgcttg tatttactta aaactaaaaa      6840
     acaaaataat ccttgaatca caagatgcaa atccaactgc atcaccaaga ttgcgggcat      6900
     caacaccaat agaaggagtg gaagcataag cttccctttt aaagggaggg aagtaacata      6960
     atatgcttct catattacgt ttacatactt acactaattg tacatacaat cttgcacatg      7020
     cataaacaca tgaaaccagt ttacattttt acttacactt aagcgcataa tttgttgtgc      7080
     atccataccg ttatttttcc gttctttttt gtacacatat actgattaga cattcccgtt      7140
     tctcgcgact cacttcgagc cgatcaaaaa ctctgtacag tcagtcttaa gccgacaacg      7200
     aagaaataaa gatctaaact aaaaaatacc tcgtgttgat tctgaaactt ctttaaaggc      7260
     gttgatctta gtcaaacgac ggatcatttg ttcgactcga atagtaaaat acgtaagt        7318
//
ID   XDMR_DM     repbase; DNA   ; DRO   ; 360 BP.
XX
AC   M16263;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.melanogaster dispersed middle repetitive DNA sequence.
XX
KW   Dispersed middle repetitive DNA sequence; DMDMR; XDMR_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-360
RA   Waring L.G., Pollack C.J.;
RT   "Cloning and characterization of a dispersed, multicopy, X
RT   chromosome sequence in Drosophila melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 84, 2843-2847 (1987).
XX
DR   GenBank; M16263; Positions       1     360.
XX
SQ   Sequence 360 BP; 138 A; 56 C; 42 G; 124 T; 0 other;
     ccaaatttaa atgcaaatcg atttggattt taataacaaa ctcaacgagg tatgacattc        60
     catatttggt ctattatttt caatgttatg atcaaaatac caaatatttt tttcacaaaa       120
     aaccaggaaa acgaaatttg gcaaaaaatt taatatttaa gtagagtttt ttgggtataa       180
     cttgactaaa aatggtcaca caactaaaat aattaccatt ttgtgctcct aattaccaat       240
     actaatcatc cccatcactt tttggcggac tttgaaaaat taatttttgc ccaaattttc       300
     gcattttttg taaggggtaa ctcatcaaaa tttttaaaaa atgccaaaaa aataaagttc       360
//
ID   FORK_DM     repbase; DNA   ; DRO   ; 1435 BP.
XX
AC   X62679;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.melanogaster forked gene suppressor repeat.
XX
KW   Repetitive sequence; Tandem repeat; DMFORK; FORK_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1435
RA   O'Hare K.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (18-OCT-1991)K. O'Hare,
RL   Imperial College of Science, Technology and Medicine, Dept of
RL   Biochemisty, London SW7 2AZ, UK.
XX
RN   [2]
RP   1-1435
RA   Tudor M., Mitchelson A., O'Hare K.;
RT   "FORK_DM.";
RL   Unpublished.
XX
RN   [3]
RP   1-1435
RA   Mitchelson A., Simonelig M., Williams C., O'Hare K.;
RT   "Homology with Saccharomyces cerevisiae RNA14 suggests that
RT   phenotypic suppression in Drosophila melanogaster by suppressor
RT   of forked occurs at the level of RNA stability.";
RL   Genes Dev 7, 241-249 (1993).
XX
DR   GenBank; X62679; Positions    8638   10072.
XX
SQ   Sequence 1435 BP; 469 A; 236 C; 265 G; 465 T; 0 other;
     aagggcgctg tcacctcgaa aactttaaaa gctttgaagt taagataatg tatgcatttc        60
     tttccttttt tctgattttc gaaacgtaac gttttaaacg ttttaatcat tcgttaatca       120
     aacagcaatt catataacag aacgttatat gaatttttgt taagtgttct aaatattttg       180
     gtaacacaga caggacgaaa tgaattttct atctattaaa taaattgata tttaaagaaa       240
     gcaaattaat ttagaaatat attgacaatt tccaactaat ttatctctgt tatggaaaat       300
     tagtttagga aaaaagttaa aataacaaaa ggaaccgcta tagtagattt tctccactag       360
     cgccactcaa ctaaggggag aacgagggag aaactttgaa acttgattgt catatccata       420
     aaattgttta gaataacaag agagaatgct atagtcgagt tgcctgaata tcagataccc       480
     gttaacccag atatttttct gcgataccaa aagatgttgg ggaataaaat gagaaaaaat       540
     ttcaacaatt ttcaaaagtg gggcgtgacc ggtttgtcgg cttaagggcg tcacagtggg       600
     tgtggcaaac agtttttttt ttgcacatcg atcggaattt acaagactaa taaagatgtg       660
     aaaaaatatc aatatatttt tcaaaagagt gatcgtggca ttttttcgtg ggcttgtggg       720
     cgttgcaaca tggatcaaca aacttgcgct gcgtctttgt ctctagaatc tgcatgctaa       780
     atctccgcct tccagctttt atagttcctg agatctcgac gttcatacgg acagacggac       840
     atggctatat cgactcggct attgatccgt tatacagtcg gaaacgcttc cttctgcgtg       900
     ttacattcct ttaaacgaat ctacgttact ctacgagtaa cgggtataat aaccaaataa       960
     aaaagtctaa acatatttaa aaaatttggt tggcgttcga atgagatggt ggaggtattt      1020
     tggcaaagcg atacaaagta gcaaaaaatc aaaaaatgca atgaaaaata attataacat      1080
     ttcacaaaag tgtgggtgtg aaccttttgg gcggtttgcc gtcgttaggg tgtgcgaata      1140
     tttcaaaact tgcccacgta ccactatgtg aaattttacc actttttctg cccaaaatga      1200
     ataactccag gacgttgaaa gatattcaga ttgggttaca atatatccgt tctgaaaccg      1260
     ccccttatat ttgttgtagt ttgtaactct agaacggata aagatattta aatttttttg      1320
     ccattatctt ttatgatacc aaaaattgtg gccgtggcac cgcctcttat atttaattaa      1380
     ctaattttgt ataggtattt ctctaatttc gtatgctttt tctagtccaa gcaaa           1435
//
ID   DMLTR5      repbase; DNA   ; DRO   ; 266 BP.
XX
AC   J01078;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.melanogaster transposon-like insert into cuticle protein gene
DE   III (CP3), 5'LTR.
XX
KW   Repetitive sequence; transposon; DMLTR5.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-266
RA   Snyder P.M., Kimbrell D., Hunkapiller M., Hill R., Fristrom J.,
RA   Davidson N.;
RT   "A transposable element that splits the promoter region
RT   inactivates a Drosophila cuticle protein gene.";
RL   Proc. Natl. Acad. Sci. U.S.A 79, 7430-7434 (1982).
XX
DR   GenBank; J01078; Positions      48     313.
XX
SQ   Sequence 266 BP; 74 A; 55 C; 69 G; 68 T; 0 other;
     agttaataat tacagttatc gatttgattt tgaagatcgc aagcgaccgt ttattgcaat        60
     ttatcattcg aaactaaatc tagcgtacaa aatgtttccc taagtcccta gcaatcaagt       120
     gaagtcgtcg gcagtggcgc agcaggcgtc ggccgcggcg cagcgcagaa gtgtcgatgt       180
     cgcgcttaac cgttcgttgg cgttgatggc agcggagact atgtggaacc acaagatgtt       240
     agagaatcaa ttgcagggca ataact                                            266
//
ID   DMLTR3      repbase; DNA   ; DRO   ; 482 BP.
XX
AC   K01952;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.melanogaster gypsy transposon sc1, 5' LTR.
XX
KW   transposon; Long terminal repeat (LTR); DMLTR3.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-482
RA   Freund R., Meselson M.;
RT   "Long terminal repeat nucleotide sequence and specific insertion
RT   of the gypsy transposon.";
RL   Proc. Natl. Acad. Sci. U.S.A 81, 4462-4464 (1984).
XX
DR   GenBank; K01952; Positions      25     506.
XX
SQ   Sequence 482 BP; 126 A; 102 C; 112 G; 142 T; 0 other;
     agttatataa gttccaatag gtccagagtt atgttatttc cagtaggtct agagatcttc        60
     cttctttcgc tgaggttcgt cttagacact gtttatggag attaggttgg agggcttgac       120
     ttcgccccct tagttattat cactagcctt gtggcgatag cgatttgatt gtaaataaga       180
     acaatgatgt ttaacggcaa tgagccggag caagctgtgg tttatttcaa cacaagattt       240
     gaactgagta gaagacaata ttgaaaacta agtttaccct cgagcaatgc atcgcgccgc       300
     cacaagtcgg caagccgact cagcatttct tgcagcgtga agcaacactc ccggtaggaa       360
     gtgtcagctt tccgctgcca gcattcttcg cgtggagcgt tgaacccaat tctgggcgcg       420
     tcagcattgt tcatacaaag ctacttagtt gctacgaagc aatacattgt tagttgttaa       480
     ct                                                                      482
//
ID   LTRBLD_DM   repbase; DNA   ; DRO   ; 399 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 3)
XX
DE   LTR from BLOOD LTR-retrotransposon - a consensus sequence.
XX
KW   Long terminal repeat; DMBLDLTR; LTRBLD_DM;
KW   BlOOD LTR-retrotransposon LTR; BLOODI.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1
RA   Bingham M.P., Chapman H.C.;
RT   "Evidence that white-blood is a novel type of
RT   temperature-sensitive mutation resulting from
RT   temperature-dependent effects of a transposon insertion on
RT   formation of white transcripts.";
RL   EMBO J 5, 3343-3351 (1986).
XX
RN   [2]
RP   1-399
RA   Wilanowski M.T., Gibson B.J., Symonds E.J.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila
RT   melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 92, 12065-12069 (1995).
XX
RN   [3]
RP   1-399
RA   Kapitonov V.V., Jurka J.;
RT   "LTRBLD_DM.";
RL   Direct Submission to Repbase Update (NOV-1998).
XX
CC   [3] (Consensus)
XX
CC   LTRBLD_DM is LTR of active BLOOD LTR-retroelement.
CC   Originally reported orientation has been changed based on the
CC   internal sequence BLOODI [2,3]. There are several identical
CC   copies
CC   of the LTRs in the drosophila genome.
XX
SQ   Sequence 399 BP; 113 A; 89 C; 87 G; 110 T; 0 other;
     tgtagtatgt gcatatatcg agggtacact gtacctataa gtacacagca acacttagtt        60
     gcattgcata aataaatgtc tcaagtgagc gtgatataag atcacccatt tatgctttaa       120
     gctaagtcag catccccacg ctggccgctg gccatatatg cgcataagct ctctctctct       180
     ctctcttata catatatata tacgctgctc ttctgccgct gtcgacggcg gcgcagtcgc       240
     agtatttagg taagattaga cactctgtag aggttaagcg ggcagaaccg tttctgctac       300
     tcgaagagat aagaagaaat aaaaaggtgg cctgacggct gcacccaact gcaaggaaaa       360
     cacgtgttct caattggtgg catatattgg tttattaca                              399
//
ID   PROTOP      repbase; DNA   ; DRO   ; 3409 BP.
XX
AC   AC005453;
XX
DT   14-JUL-1999 (Rel. 3.4, Created)
DT   14-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Autonomous DNA transposon; a molecular fossil.
XX
KW   TIR; transposase; P-like DNA transposon; insertion element 1360;
KW   HOPPEL; PROTOP_A; PROTOP.; PROTOP.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3409
RA   Kapitonov V.V., Jurka J.;
RT   "PROTOP.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
DR   GenBank; AC005453; Positions     634    4052.
XX
CC   This mobile element encodes transposase distantly related
CC   to the P-element (position 970-2718).
CC   PROTOP has perfect 31 bp-long TIRs and it generates
CC   7 bp-long duplications of target sites upon its integration
CC   in the genome.
CC   Nonautonomous form of PROTOP is deposited in Repbase Update
CC   as PROTOP_A.
XX
SQ   Sequence 3409 BP; 1264 A; 533 C; 575 G; 1037 T; 0 other;
     caaagacact agaataacaa gatgcgtaac gccatacgat tttttggcac acgatttttt        60
     tgccgtggct ctagaggtgg ctccaggctc tctcgaattt ttgttagaga gcgagagagc       120
     gaagagcgct acagcgaaca gctcttttct acgcatacag tgatagcaga caactttatg       180
     tgtgcacacg tatgctcatg cattgtaaat ttgacaaaat atgcccttca ccgtagaagt       240
     tcttagactt taaatctata ttatttttga tcaattggca tcatgcgaaa aattcttgtt       300
     tgcattgcct taacgttatt attatttgaa aacagattag aaatagccaa atccatgtac       360
     atatcataac aaaataaatt tcaaaaatta ctttatatta gaatatttgt cattagagta       420
     ttcagcttgc ggcgtgtgaa aaattaataa ggcaatgatt gttgagtgct tgtgtccgca       480
     cttcgtgcct caagatatga ccaaaacaaa gacactagaa taattctagt gtctttgatg       540
     tgacttttgc aataaacagt tttcatattc atatttattt tactaaagac aaattagaga       600
     gccaatttag aattaaaatg ctgaggaaag aaaactcaaa cctaaaaaaa aataagttag       660
     gttggaatct aagaccgaaa aaaacatata ttctgaaata gataaaatta atttaacagg       720
     aaatgaaaaa atattaacga aaatgctttt taaggaaaaa agggcacaaa tacaagatgg       780
     aatgattgcg aaaaattgtt tgctcagagc atatattaca ggtccacttt gacatatacg       840
     ttcttaagag actcgctgaa attaaatttt ccaagtccat catctttgca aaagtggaac       900
     agcataaaaa agttacagcc aggagacaac gaatgtttgt actcagccct taaagaatct       960
     ataaaagaaa tgaatgcatc tgataaagag tgcatattgg cttgtgatga agtagcgata      1020
     aaaaaaaacc taacttacaa tgtgtcagtt gatataatag atggaataga gcatttactt      1080
     gatcgctcta ataaaatggg aagccatatt tgcgtatttg ttgttcgggg tatttaaaaa      1140
     aaatggaaat ttatattaaa ctattttgtg gccgaaacga atataaaagg cgattgcgta      1200
     aaaagtctta tttataaaaa tattattatt gctgaaacaa ttgggttcaa agtaaggggt      1260
     gttgtgtacg atcaaggagg taacaataga aaatgtacct cactacttga agtcaccaat      1320
     gagaaatctt actttacctt aaataataaa aaatattata tgttttatga cattccgcat      1380
     cttttcaagt ctgtaaggaa taattttcta agagctaatt ttgaaacccc tgacggacta      1440
     gttgactttg atgtcattcg agaggtttac gaattagatc atggatcagt aacgagaatg      1500
     actaaattaa caaggagtca cgttaatcca accagatttg atctaatgcg cgtatgtttg      1560
     gcaactcaaa cacttagcca cactgttgca gcggcaatta agacttgtaa ccaaaacaag      1620
     caattacatc gaaatagttc cgaagttgca gcttctacgg ctgcatttgt ccaaaaagtt      1680
     aatgattact ttgattgcct gaatagcaga gtattaactg acaaaaaccc catgaaattc      1740
     gcgctccaag ttaacaatgg agtttggaac aaactaaagg aaatgcagga atacctaaag      1800
     agcgttaaat atcacgggaa taaaatatat tgtgttgatg gcttgatcca aactactgaa      1860
     gctatatttg gactcctcga agatctcttt aaggatcaca cagaccactt tttcttttta      1920
     actagtagat taaaccagga tgcccttgaa aatatatttg cgtgcgttcg agcaaaaggt      1980
     gataactgca gaaatccttc agttaacgaa tttaatataa taattgccaa gctcatatct      2040
     ctacacattt ttaaattttc acaaaagtcg aattgcgaat cagatgatga tgttatgttg      2100
     ccaatagagt tcgattcgat aatatatcag cctttcgttg aaaaaaagaa atacagcaac      2160
     aagaatactc tgtatcattt tccaaaatcg tgcaagacaa tgagaggtac tttgaccaaa      2220
     atatagataa ctttgtgcaa tgatgtaccc attgaattaa cttccagtag atattttgtt      2280
     ggatatattg ctaaggaatc cagttgcgat aaatgcagat cggtaatttt aaaagaaacc      2340
     gagcatttaa cagctccatc agagcttttt atacatgaaa aaaactactc aatagaatcg      2400
     gacttcggga aattaaaggc accatctgat ttatttttta atatttgcaa aatacacatt      2460
     aaagctttcg aaaatatttt taaaaataat aaaaaacaaa tgtgtataaa aaaatgtatt      2520
     attgagcaat gcattaagtg cacaaatgaa agtagtgcct tctcattatg gttttatgaa      2580
     aataatgaat gttatgcaca tagaacagat cttttaaaca aacttataaa agttttgctt      2640
     tttaagcatt gtaagtggac tgtgatagct gatagacaaa aaaagcaagc taagctcagc      2700
     attctatctc ataaataaaa aaaatgagcg ttatttaaat aactgacgac tgaaaaatcg      2760
     agcaatatat aataaaaaac aatagttaga aaaataactt aattggggaa tatggaaatg      2820
     ttaatgttaa acattaaaat atttcaagtc gacttgaagg tcatatacgt aaatataaga      2880
     caccattaca attgtaatgg cctccccgtg gtgttccctg ggtaccgatt attacacata      2940
     ttacacataa ataattatga acataaatat aaatatgtaa acggtagcta attcgagcgg      3000
     cgattttaac aaacgaattt aaaaagcttt aaaattaaaa aattttaaaa tttaaattaa      3060
     aattttaaaa ttataataac aagggcgcga attttttaaa attattttat tttatcatat      3120
     tgctacgaaa ttggcaaaaa aactacccta atatgtacaa tgtaaattca tttcttagat      3180
     cagaattgat ttcggcccga aaatcgtctt ctagcacaac acgcacactt atacgcgttc      3240
     tcgtctcttg tttttactca cacaagcaag caaattctat ttttagattt cttacgttct      3300
     cagcgtgagc gagcggaaag acagcaattt tggccgtcac caaaaaagtg gctgcatagt      3360
     gccaaaccaa tgtatggccg ttacgcatct tgttattcta gtgtctttg                  3409
//
ID   GYPSY_DM    repbase; DNA   ; DRO   ; 2790 BP.
XX
AC   X03734;
XX
DT   22-DEC-1995 (Rel. 2, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. melanogaster retrotransposon gypsy gene fragment for reverse
DE   transcriptase-like enzyme.
XX
KW   retrotransposon; reverse transcriptase; Copia-like element;
KW   GYPSY_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2790
RA   Yuki S., Ishimaru S., Inouye S., Saigo K.;
RT   "Identification of genes for reverse transcriptase-like enzymes
RT   in two Drosophila retrotransposons, 412 and gypsy; a rapid
RT   detection method of reverse transcriptase genes using YXDD box
RT   probes.";
RL   Nucleic Acids Res 14(7), 3017-3030 (1986).
XX
DR   GenBank; X03734; Positions       1    2790.
XX
CC   CDS <1..>2790
CC   /note="reverse transcriptase-like enzyme (930 aa);
CC   /codon_start=1.
XX
SQ   Sequence 2790 BP; 859 A; 692 C; 597 G; 642 T; 0 other;
     gggagaacct taaagatgct aatcgatacg gcgcgggcaa aaaactacat taggcccgta        60
     aaggagctga aaaatgtaat gccggtcgcc agccctttct cggtgagctc aatacaccgc       120
     tccaccgaaa tcaaacacaa atgcttgatg aaagtcttca agcacatctc cccatttttt       180
     cttttggatt ctctcaatgc gttcgacgct atcataggct tggacctgtt aacacaggcc       240
     ggggtaaaac tcaaccttgc agaggactcc ttagaatacc agggcatcgc tgaaaagctt       300
     cattatttca gctgccccag tgtaaatttc actgatgtaa acgatattgt tgtacctgac       360
     tccgttaaaa aggagttcaa ggacacaata ataaggagga agaaagcttt ctccacaaca       420
     aatgaagctc ttccttttaa caccgctgtc actgccacaa ttcggacagt tgacaatgaa       480
     ccggtgtact caagagcgta cccaactctt atgggtgtct ccgactttgt gaacaacgag       540
     gtcaaacaac tgctgaaaga cggcattatc aggccctcaa ggtctcccta taacagcccg       600
     acctgggttg ttgacaaaaa ggggaccgac gcttcgggaa acccaaacaa gaggttggtc       660
     attgacttta ggaagctaaa tgagaaaact attcctgacc ggtacccgat gcctagcatt       720
     cccatgattc tagcgaatct gggcaaggca aagttcttca ctacccttga tcttaagtca       780
     gggtatcatc aaatttacct cgcggaacac gaccgcgaga agacatcgtt ctcggtgaat       840
     ggtggtaaat acgagttttg ccgtctaccg ttcggcttga gaaatgcaag cagcattttt       900
     caaagagccc tagacgatgt gcttagagag caaatcggga agatatgtta cgtctatgta       960
     gatgacgtca taattttctc tgaaaacgag tccgaccatg tccgccacat cgatacagta      1020
     ctaaaatgcc tgatcgatgc caacatgaga gtaagccagg agaaaactag attctttaaa      1080
     gagagtgtag aatacctcgg ctttattgtc agtaaggacg gaactaaatc cgatccagag      1140
     aaggtgaagg ccattcagga gtaccctgaa ccagactgcg tttacaaggt taggtccttc      1200
     cttggtttag ccagctacta cagagtcttc atcaaagact ttgctgccat agcccgcccg      1260
     atcaccgata tcctaaaagg ggaaaatggt tcggtgagca aacacatgtc taaaaaaatt      1320
     cctgttgagt ttaatgaaac tcaacgcaac gcgttccaaa gactgcgaaa catactagca      1380
     tccgaggatg tcatactcaa ataccccgtc tttaaaaagc cttttgacct tactacagat      1440
     gcttcggcaa gtggtatcgg tgcagtccta tcccaggagg gcaggccaat caccatgata      1500
     tcgcgtaccc ttaaacagcc cgagcagaac tacgccacaa acgaaaggga attgctggcg      1560
     attgtatggg ccctaggtaa gttgcagaac ttcctgtatg gctctaggga gattaatata      1620
     tttaccgacc atcaacccct cactttcgct gttgccgaca ggaacacgaa tgccaagata      1680
     aagaggtgga aatcttacat agaccagcat aatgccaagg ttttctacaa acctggcaaa      1740
     gaaaatttcg tggcagacgc cctctctagg cagaatctga atgccttaca aaacgaaccc      1800
     caatcagacg ctgcgaccat tcacagtgag ctctccctga cctacacggt cgagacaaca      1860
     gacaaaccgt taaattgctt caggaaccag atcattctgg aggcagcacg ttttccgctc      1920
     aaacggaacc tggtgctctt tcgaagcaaa tctcgccact tgatcagctt tactgataaa      1980
     agttggctat taaaaacact taaggaggtg gtaaaccctg acgtcgtgaa cgctattcac      2040
     tgcgacctgc ccactctggc aagcttccaa cacgacctca ttgcccactt tccagccacc      2100
     caatttcgtc actgtaagaa tgtcgtgtta gacataaccg acaaaaacga acagatcgaa      2160
     atcgtcactg ctgagcacaa ccgcgctcac agagccgcac aagaaaacat taaacaagtc      2220
     cttcgggatt attactttcc caaaatgggc agtttagcta aagaagtagt agctaattgt      2280
     agggtctgca cccaagcaaa gtatgacagg cacccgaaaa agcaagagct cggggaaacg      2340
     cccataccca gctatacagg tgagatggtg catattgaca tattctcaac cgacaggaag      2400
     ctattcctga cgtgtattga caaattttct aaatatgcaa tagtgcaacc agtggtgtct      2460
     agaacaatag tggacatcac agcacccctg ttgcagatca ttaacctgtt ccccaatatc      2520
     aaaacggtct attgtgacaa tgagcccgca tttaactcag aaactgtcac ctcaatgctc      2580
     aagaacacct tcggcattga catagtaaat gcgcccccac tccacagctc gtccaatggc      2640
     caagttgaac ggttccacag cacattggca gaaatcgcca ggtgcctgaa gttggacaaa      2700
     aaaacgagtg acacagtaga actaatcttg agggcgacga tagaatataa caaaaccgtg      2760
     cactcagtta ctcgtgagaa ccaattgagg                                       2790
//
ID   ARS312_DM   repbase; DNA   ; DRO   ; 265 BP.
XX
AC   J01068;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. melanogaster autonomous replication sequence (ars) 312.
XX
KW   Repetitive sequence; Origin of replication; ARS312; ARS312_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-265
RA   Selick H., Kauffman S.;
RT   "ARS312_DM.";
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania.
XX
DR   GenBank; J01068; Positions       1     265.
XX
SQ   Sequence 265 BP; 77 A; 54 C; 29 G; 105 T; 0 other;
     ccacttcccg tccaaaacta ctacgcccaa gcctataaaa aatgttttga tatattttca        60
     tatttattaa tattattgtt attattatta tttattagtc ttgtaaattt ctatcgattt       120
     gccaaaaagc tttttgttac gatcactcta acgcactcta acactcaaaa gtgccgcacc       180
     cacacttttg ataaattttt taatatattt aaatattttg ttgcgaactg ctttctttcc       240
     ttagtgacag tgcctctagc tcagg                                             265
//
ID   Transib-N1_DM repbase; DNA   ; DRO   ; 514 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   21-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib-N1_DM is a nonautonomous family of Transib transposons.
XX
KW   Transib; DNA transposon; Interspersed Repeat; Non-autonomous;
KW   Transib-N1_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-514
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology (2005)in press.
XX
CC   [1] (Consensus)
XX
CC   Transib-N1_DM is a family of nonautonomous DNA transposons that
CC   belongs to the Transib superfamily. Transib-N1_DM is a relatively
CC   old family: the consensus sequence is ~16% divergent from
CC   Transib-N1_DM copies present in the sequenced portion of the D.
CC   melanogaster genome. Transib-N1_DM elements are characterized by
CC   5-bp target site duplications and 36-bp terminal inverted repeats
CC   (4 mismatches).
XX
SQ   Sequence 514 BP; 169 A; 76 C; 83 G; 177 T; 9 other;
     cactatggga aatttgacca ctttttctgg ccaaaattaa taactccaga acggagaaag        60
     atattaagat aatttttttt gcattgggtt ayactagcac atatctttta tgacattatg       120
     actttgactt awgtctttat cacaaaaata ttttagtaag ncracttaya tttttccggt       180
     attaagggga taacacgatt tttttttagt antttgacag tcacaaacac ataatacaag       240
     ccacactgaa tacaaytcat tttgcagaat aaaaaaaaac gctttggttt aaaagatatt       300
     aaaatatttg tatggaggga aaaacttrtc gttgcagacc tktttttgtg cgtgcaacag       360
     ctgatttctt tgttgtggcg ccatctatat ttatttctgg tatgcagaac taaacattgg       420
     tcaattatga atgcatgcat ttaatattat cttaatcgac cgactttcat aaaataggtt       480
     ttggccaaaa aaagggggta aatttcccat agtg                                   514
//
ID   TRANSIB1    repbase; DNA   ; DRO   ; 2167 BP.
XX
AC   .
XX
DT   31-JUL-2000 (Rel. 5.06, Created)
DT   24-APR-2001 (Rel. 6.03, Last updated, Version 2)
XX
DE   TRANSIB1 is a DNA transposon, a consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; TRANSIB family;
KW   TRANSIB1; TRANSIB3; transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1816
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB1.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
RN   [2]
RP   1-2167
RA   Kapitonov V.V.;
RT   "TRANSIB1.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
CC   [2] (Consensus)
XX
CC   TRANSIB1 belongs to the TRANSIB family of DNA transposons.
CC   It has generated duplications of the CNNCG target
CC   sites upon its integration into the genome. TRANSIB1 has 43-bp
CC   terminal inverted repeats and it encodes remnants of a DDE
CC   transposase, which is not similar to any known transposases and
CC   is a characteristic of TRANSIB-like transposons.
CC   There are ~10 copies of TRANSIB1 which are ~95% identical to the
CC   consensus sequence. It is likely that TRANSIB1 lost its activity
CC   several million years ago.
CC   TRANSIB1 encodes the 461-aa TRANSIB1p transposase which has
CC   accumulated a few false stop-codons and false frame-shifts,
CC   which are irreversible because of the low number of TRANSIB1
CC   copies present in the genome.
CC   TRANSIB1p (positions 544-1926):
CC   DEYLFGHAELLDIWSNNSRSEDAVRPHIFKKIGQNNLNECCISLLNKKVKSFFDYIRKHLPGCNRSLDRL
CC   KKKHFKWLASSISIIADCKTPKLVYEKANDRLKRKLASDLFGPENNTSVPLLLHAASVSSKKGNEKDMAV
CC   VLKAAGNSDNINNIKRKMFSSEPTQMSVDNALAFLFENGFTKSQYINLKRNTKVHGFDIYPSYPDVLNAK
CC   LKLRPNGIEYFENKAQVKLQQLLNHTTSRILEMQYETFKANTNSIECQLIFSYGYDGSTGQSIYKQRYEE
CC   IGAVYDGSLFVTTIVPLKLVDNEQKIIWINRSPQSIRFCRPLKIEFIKETRELILAEKENLDTQTRNLHI
CC   YLHKINNINIFVKYVGQMTLIDGKVLNILTGCNSCQCCPICAAKPTHLMNVNDFNSDIFDAKSQTLQFGI
CC   SPLHAWIRFFEFVLKLAYRADLKTWHNLHLNMILFYFIFYI
CC   This protein is ~40% identical with those in TRANSIB1 and
CC   TRANSIB2.
CC   There is only partial ~60% nucleotide identity between TRANSIB1
CC   and
CC   TRANSIB2 or TRANSIB3.
XX
SQ   Sequence 2167 BP; 758 A; 325 C; 364 G; 720 T; 0 other;
     cacactggtt ttttatgtgt ttttttttgg cagaaagtca aaaaaaaata ttttaacgga        60
     ataaaaaaat gtatggtttc tttatattta ggatagtctt attagataaa aagtcgattt       120
     ttactttttt acgcaaaact ggcttatcgt cgacctctca aagacagctg attgtcgata       180
     acatgcgtaa gacaaaattg cggcaaatca ttttgcaaca tttgtggttt atatttcctc       240
     agagaattaa aaaagtttaa agttttgtca tggaaaacag tagcacaggt atgtagattt       300
     gtagttcact aacatttttg tgtatgttat atgtttttgt gtagttgtat cgtgttttgt       360
     ttatgtgcct tttttacagt caacttaaca aatgtagctg tgtttcgtgg aatataactt       420
     ttgtatggga aaccacttca aaaaaatttt aacggcaagt tattaactaa catgtgtata       480
     atattataca actagtttca tatgctcctt tttgttcctt tttgaaaaaa ttacgttttt       540
     gtagatgaat acttgtttgg gcatgcagag ctgctagaca tttggagcaa caatagtcgc       600
     tctgaggatg cagttaggcc gcatatattt aaaaaaattg gtcagaataa tttaaatgaa       660
     tgttgtattt cattgttaaa taaaaaagtt aagtccttct ttgattacat aaggaaacat       720
     ttgccaggtt gcaatagatc gttggacagg ttgaagaaaa aacacttcaa atggctggca       780
     tctagtatta gtataatcgc tgattgcaaa actccaaaac tagtttatga aaaggctaat       840
     gaccgactta aacgaaaatt agcttcggac cttttcggac ctgaaaataa tacttctgta       900
     ccattactct tgcatgctgc ttcagtttcg tctaaaaaag gaaatgaaaa ggacatggca       960
     gttgtattaa aagcagctgg taacagcgat aatatcaata atataaaaag aaaaatgttc      1020
     tcttctgagc ccacacaaat gtccgtcgac aatgcattag cctttttatt tgaaaacgga      1080
     tttacaaaaa gccaatacat caatttaaaa cggaatacaa aagtacacgg ctttgatatt      1140
     tacccatcat atcctgatgt tcttaatgct aaactaaagc ttagaccaaa tggcatcgag      1200
     tattttgaga ataaggcgca agttaagtta caacaactct taaaccacac aacttcgcgg      1260
     attcttgaaa tgcagtatga aactttcaaa gcaaatacca actcgataga atgccaatta      1320
     atatttagct atggatatga tggatcaact ggtcagagta tttataagca acgttatgag      1380
     gaaatcggtg ctgtatatga tggatcgctg tttgttacta caattgtgcc attaaaatta      1440
     gtagacaatg aacaaaaaat aatttggatc aacagatcgc cacaatctat acggttttgt      1500
     cgtcctttaa aaattgaatt tattaaggaa actcgagagc ttatattagc agaaaaagaa      1560
     aacttggata cccagactcg taatctgcac atatatttgc ataaaataaa caacattaat      1620
     atatttgtaa aatatgtcgg tcaaatgaca ctaatagacg gtaaagtctt aaacatatta      1680
     acaggatgta actcttgcca atgttgcccg atttgcgcag caaagccaac gcatttaatg      1740
     aatgtgaatg attttaattc agatattttt gatgctaaat ctcaaactct tcagtttgga      1800
     ataagccctt tacatgcgtg gattcgcttc tttgaatttg ttttaaaact tgcatacaga      1860
     gctgatctta aaacttggca taatttacat cttaatatga ttttatttta ttttattttc      1920
     tatatataat atcaataaaa tatttaatta aatacagata caaaaatatt ttttctttgg      1980
     taaggtaaat atttttatgg catatcggcc agatcgttta tatggcagct atatgaaagt      2040
     tgaccaaatc acttgaaatt ttgtgaatca tcttggggga agtaaagagt aacacaaacc      2100
     aaatttggtg aagataggtc atcatttcga atttctgcca aaaaaaaaca cataaaaaac      2160
     cactgtg                                                                2167
//
ID   TRANSIB4    repbase; DNA   ; DRO   ; 2651 BP.
XX
AC   .
XX
DT   24-APR-2001 (Rel. 4.4, Created)
DT   24-APR-2001 (Rel. 4.4, Last updated, Version 1)
XX
DE   TRANSIB4 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; TRANSIB family; DDE-class; TRANSIB4p transposase;
KW   TRANSIB4.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2651
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB4.";
RL   Direct Submission to Repbase Update (APR-2001).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB4 belongs to the TRANSIB family of DNA transposons.
CC   It has generated 5-bp duplications of the CantG target
CC   sites upon its integration into the genome (it has happened
CC   a few million years ago).
CC   TRANSIB4 has 40-bp terminal inverted repeats.
CC   There are ~10 copies of TRANSIB4 which are ~93% identical to the
CC   consensus sequence.
CC   TRANSIB4 encodes the TRANSIB4p transposase (positions 545-2147).
CC   The transposase is not perfectly recovered since it contains a
CC   few false stop-codons and frame-shifts.
CC   TRANSIB4p is 37-44% identical with TRANSIB1p-TRANSIB3p.
CC   There is 60-62% nucleotide identity between TRANSIB4 and
CC   TRANSIB1-TRANSIB3.
XX
SQ   Sequence 2651 BP; 932 A; 454 C; 451 G; 814 T; 0 other;
     cactatgggt aaaaagccgg aaattttggt attaatgtaa ttttttttgt gattgatatt        60
     ttaatgctgc tttcattttt tgattcctaa gtaacaagat agcataaaaa taattttaaa       120
     acatttttac gagttatcgt ttatttttgg cgcgctttca aagtcagctg attcagaggt       180
     gctttgaatt gtgaaaattg gcggaaaaag ttgaacaaat tgcagcgcaa acattgtctt       240
     catagcaaac tttgagttta tttttaatta tggaaaaaac aagtcagagt atgtaaatta       300
     ttcgtgaata cacgttttcc gataattgtg tgtggttgtt gttgaattgt ccaatgtatt       360
     gcttgtgagt attttcaatt gtttactaac aaacgttcta gtgttctgtg gaatattact       420
     tttgtatggc acaacgaatc accaaagtta aagttgtatg tttttaacaa atatatgtgg       480
     aatcaaatgg tattaatgtt ttttgcccct ttttgccctt ttttgcgaaa cattttatgt       540
     tgtaggtgtg tataagttta gtcatgcagt tctgctggat gtttggagca acaacaaacg       600
     cgatgcagac gctgttaaca gttatatttt ggaaaatata gaagagaact ttgagactaa       660
     agagcaaaag attacaattt caaagaaagt gaaccaattt attacttatg taaacaagca       720
     cttaaggaaa tgcaatcgaa tgttggaccg attcaaacga aatcatttat tgtggcttgc       780
     gtctaaaatt gttgtcgtta ttgataagcc agaaatgaca ctatgcaaac ctagccgaaa       840
     acagttaaca tatgaagatg cagggcctca acctaaaaaa aaaattagca aattagctgg       900
     ctgcagaaca agggcattca acaccacttc tcgtacatgc tgcttcaatt tccgcaaaaa       960
     aaacgaagca ggcagaaacg gcctttgtat taaaaaaaaa aggataagca gtgaaaacat      1020
     acatgatata aaaaagaaaa ttgagacaaa tcatcctatt aaaataagtg ctgataatgc      1080
     tttagctctc ttaattgaaa atggatttac aaagcagcaa tataataata taaaagcgct      1140
     caataagcag caaggatgcg atattttccc tccttattca aaagtagcag aagcaaaatt      1200
     gaaatgcagg ccttccgaac ataaaatttc tgaaaaaagg ccaggagtat cgtagcaaga      1260
     tttgctagat catacagctg gccacatatg tggaatcaaa tggtaagttt ttaatgtttg      1320
     ctcagaccca acgaattgta cattaattgt gagctatggc ttcgatggat ctacggacca      1380
     aagcacgtac aaacaacgct ttctatcaaa cgaatgtatc gccctagatc aattcctttt      1440
     cgtcactcca attataccgc tgaaactaat agatgaaatc aacaatcgag ttatttggat      1500
     acattcatct ccacaatcgg tgagatttgt cggcctttga aaattgagtt tataaaggaa      1560
     cgtgctgccc ttacattgaa gaaaaaacaa atttggatgc ggctataaaa aaccttagac      1620
     catattccta cacttccaaa aaccaaataa tagcatatac tgcagaccag cgttcgttct      1680
     cgaacagcaa gatattttcg tccgttttga atttggacta caaaatcatt tacaattttt      1740
     atataatttt gatttcaatt tcttgtgagc acatgattga tgcgaaaaat ttaaatctct      1800
     ataccattct acttttaatt tatacgttaa atacgaacct tatatgagat acatacatgg      1860
     taaaatagag tagtcaccaa ccaatattgg tacatggata taaaattgta agccaattta      1920
     ttgttcctgt tagtgtcctt ggagaaaacg cgtcagaagc gcgcaacaaa ctttacaaga      1980
     gcgatagaaa atctcacgcc aggaaatgta gccgactagc aaacattaca gatgttttca      2040
     gagcagtgga ttcatctgat ccattgcttt caagtctttg tctaagagat cgaagtaagt      2100
     ttggaaaaaa gaaactcctc ccaaaagaag taatcgatat tcttcaaaat ccggatgcag      2160
     aactttataa atcaagttat cattctaata ataaagaaaa agaagtggaa gtggaagacg      2220
     aattcaattg cctttataat aagaggaggc agttgaagaa tgacaatcaa cttaataaaa      2280
     tataaaaaaa tttattgact tttatctcat aataatggtt tttgcatctt gtgtcctcac      2340
     ttcgctccca cgccaatccc ccagggaaga cacctccgga tccaccggtt gaaccacaga      2400
     catattaaca cccacacctc cttcgccacc catccatctc cctttaaaac cgctttcatt      2460
     tgtatataaa tacatttttc actttatttt caaggattgt ttttgtgggc ggagatgaag      2520
     gcgtggtcag atcaaaaaat aaacaaaatc caaaattcta tttaaatcct aattataaat      2580
     ataaaaaaaa tcaagtcgct atctttaaaa ttgtaattaa taccaaaatt tccggctttt      2640
     tacccatagt g                                                           2651
//
ID   TART        repbase; DNA   ; DRO   ; 14477 BP.
XX
AC   U02279;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Drosophila melanogaster telomere-associated transposons TART,
DE   TART-A and HeT-A, and TART-A ORF2 gene, partial cds.
XX
KW   DMU02279; TART.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-14477
RA   Levis W.R., Ganesan R., Houtchens K., Tolar A.L., Sheen F.;
RT   "Transposons in place of telomeric repeats at a Drosophila
RT   telomere.";
RL   Cell 75, 1083-1093 (1994).
XX
RN   [2]
RP   1-14477
RA   Levis W.R.;
RT   "TART.";
RL   Direct Submission to Genbank (28-SEP-1993)Robert W. Levis, Fred
RL   Hutchinson Cancer Research Center, Division of Basic Sciences,
RL   1124 Columbia St., Seattle, WA 98401, USA.
XX
DR   GenBank; U02279; Positions       1   14477.
XX
SQ   Sequence 14477 BP; 4765 A; 3610 C; 3009 G; 3093 T; 0 other;
     tctgtctact gtccgccttc gctaagctgg tcgccccacc actttactga cgttctcaat        60
     tttgccgaga aaactctggg agggcagaca aagttcattc tatgtggcga ctggaatgca       120
     aaacacaggc aatggggttg tacccgcgcc tgtcaacgcg gcaccgcact ctacgaagca       180
     gttcaagcag atcccatggc tgagattatt gctaccggct gtgcgacaca tttcccgcac       240
     gacacacgga aaaacccgtc agcaatagat ttctccatat gcaaaggact gggcaggctc       300
     gaaaagagaa tttcctcaag tgcggactta tcttcagacc accttcccat cctgcttgag       360
     atcaacttag atacaagcac cctctttctg caaaagcaaa acaataacat cctcaagaaa       420
     actacgaaca ttgagctctt taagactgtt cttgaaagaa agatacttct taatacggag       480
     ataagagtag cagaagacat aaatgacgcc ataaatatct ttatcaaaaa catcaaggac       540
     tcggctgatg aatcaactcc ctccccaaga atccctgaca acctcagaag aatgcatgga       600
     caagctaaca gaaatagtca caccctcaca ctagacgaaa acacaagcag attgttggaa       660
     gaaaaacgga tactaagtag aatttttaaa gctactagaa cggacgagga caaagctaaa       720
     ctaaaagcag ctgaaaatcg actaaaaaaa gcggtaaaga tcttgagaga aaagagaatt       780
     aataaacaaa ttgaaggaat agacacgaaa aacccggaca gaatgaggaa aatgtggaga       840
     ctgctagatg aaggaaaaaa gacaaaccaa ccgaactttc ccctcaaact ggaaaccaaa       900
     agaggcccca aatggacaaa aacgataaag gagacaacag aagcatttgt ttcccactta       960
     gaaggaagat ttaagccaaa taacaacgta cctgattacc acataaatac agttaactct      1020
     ggactaagaa caattaaaga aagcatgtta acagaaagat atgatgtaaa caagaatccc      1080
     tgtaaccaac ctatcacact aaaggaatta aatgacgaaa taaaaaactt aaagaatagt      1140
     aaagcaccgg gaaaagacct tataacaaac caacttataa aaaccctacc gactaaagct      1200
     acactgtacc ttatcctaat ctataactct atacttagaa ttggatacta cccagacgcc      1260
     tggaaacatg cccaagtgaa aatgatctta aaaccaggga aaagtgtgaa cgacccgaag      1320
     tcatataggc cgatcagtct actctcggga ctctctaaaa tgtttgaaag actacttcta      1380
     aaaagacttt ttagggtaga tctattcaaa aaagccatac cactgcacca atttggcttc      1440
     agaaaagagc acggaactga gcagcaaata gccagggtca cccagttcat cctcgaggcc      1500
     tttgagcgaa aggaatactg ctcagcggtt ttccttgaca tctctgaggc tttcgatagg      1560
     gtctggcacg aaggcctttt acttaaacta gctaaaatat taccatacaa cctatacatt      1620
     attctcgaaa gctaccttac aaacagaaca tttgaagtta aagaccaagc tggagagact      1680
     tcgagagcag gacaaatagg cgcaggggtg ccccaaggaa gcaaccttgg acccatactg      1740
     tactctatct tctcctcaga catgccactc ccacacatat accacccctc cccaacagaa      1800
     agaattatgc tctcaacata cgcagacgac actatagtac tcagctcaga catactagca      1860
     actgctgcca caagaaacaa cgaaaactac ctcaagacat tttcggactg ggcagacaaa      1920
     tggggtatct cagtaaatgc tgctaaaaca ggacatgtca tttatacatt aaaaaacgac      1980
     atacctacaa atctaaagac catgaagatt aagggtcaag caataaaaaa ggaaagcaag      2040
     caatcatacc ttggcgtaat ccttgatagc aagctaacac ttagtcctca cgtcacgaag      2100
     gtagtaggta aatacttgac agcctataga aaaatgtcat ggatcttaaa tgaaagaagc      2160
     aaactcccta ctaatactaa gatgctgatc ctcaaatcag ttctatcgcc aatatggcag      2220
     tatgccatag cagcctgggg tccccttgtg acagatgcac agataagacg gatacaagtt      2280
     gaggaaaaca gaaaaatgag agacatatgc agagcgggaa gatacacgaa aaaccaaact      2340
     ataagggacc gctactgtgt caaaacagta gaagagttct atcaacaggc tgtccacagg      2400
     ttctcagaaa ctacaaaatc gcaccctaat gtagctgttc gcaggatatt ctctaggcac      2460
     tatatcccga acagactaga aagaagcagg cagaggtact tgaaaatgac aatggaccat      2520
     atcacgcaaa aacagactgg actgaccctc tcacctaaac tcttaaaaat ccctgatcta      2580
     gatgactgca gaaccttaaa aaagcgaagc gagagagaga aaataagaca aacgcatcta      2640
     actgaactcc ccaccctgct gagactagag gaagaggagg cagagctcaa aagaataaaa      2700
     aaacaggaag agagggaaag aagggaaagg gaaaaccaaa agtggcctcc agataggtgg      2760
     tgtgaattgg aaataaaccg atataataaa aaatatagaa atggcgatct aaccaggcag      2820
     gaaattatag aaaaattccg agggcaacca ttaaatgtac aacgaataat cctacccgac      2880
     tacgaaggtg actaaaagta aatcaaaaca aactagggtc ggagcataaa gcagaaataa      2940
     ttaacctggc ggaaggggcg gcaaaaatat ttaaaagaaa ggaaataaat acaaaaaggc      3000
     taaaggctaa gttacaggtt acataaaaag ggaaatgtgc ttatagatat aatggtaaaa      3060
     ttaacttaac taaacaccta ctggaaaaca aaaccatgat ggctgcgtac ttaaaacgtt      3120
     tctcctggcg cgattgaaaa tccatctttc ctatccaacc gagggatctg cgactgcggc      3180
     cttctgccgt tccggctcct gatggatcca tctgctgctg gaatgggtgc cacaccggcg      3240
     ctccaaccta aaagaaagat aatatgtctt agttttcttt ccctttttct cataaaaaac      3300
     aaaagctcat ctggagtctg ataatagctt tagctcacca agacagcaaa aacaacagca      3360
     tcaaggccag caacagtgga ggcagagacc aagcggtttg ctgaacattt cgctgcccac      3420
     acccaccatt cctggaggct ctgaatgagg gagctgaagc ctctgaaaat tgaagatcct      3480
     actccaatgt gacactttcg gctccgagct caacgccggc gctgcaaatc cggcgttata      3540
     aggaaagggt gctccagctt gtggagtggt ctttccccag aggcagcagc agcagcaacg      3600
     ccagcggcaa ttggcgacct ctgcgtagcc gagtcaatcc cgttatcggt ccgtctggcg      3660
     atgcgttccg acgcggcggt atgcgtccat agggaccgcc tagaatgctt ggccaggaga      3720
     cagcagtaga cctgggcgtg ggcgtcacca gcaacatggt agccatgcgc agtcaattgg      3780
     ccggtggcaa caatcttgcc atgcagcaat agcggcgcat gctacccttg gagcgacgtc      3840
     aacagctaca tatttttcaa cagtgtagcg caacccttag gcggctacac ctacaccagc      3900
     agcagcgata ttggcagtag cagcatttaa tgtcttgcag cagtttccat ttgacaactt      3960
     ccgacgacca gactcctcgc ttggcccccg gcgattcgcc ctggaagaaa gaaagaagca      4020
     tggattagtc aaatatcaaa gcacaacaag catgcacgaa atcttcgcaa caaggactat      4080
     tccaaggcaa gcgatggtgt gttctttggc tctacatata tcgttgaaat ccgtctccaa      4140
     ctgccgcgag tcacccacga cttccactcc ctgcagacgg acgtaatgca ctacgatgtg      4200
     taaattttcc ggatccaagt gaacgccagg cggaagagga ttccctggat gtgaaggatc      4260
     acaaactgct gctttttcaa gagtccccat ttaacaactt ccgacgacca gactcctcgc      4320
     ttggcccctg gcgattcgcc ctaaaagaaa gaaagaagca tggattagtc aaatatcaaa      4380
     gcacaacaag catgcacgaa atctgcgcaa caaggactat tccaaggcaa gcgatgacga      4440
     acgtaatgca ctactatgtg taaattttcc ggatccaagt gaacaccagg cggaagagga      4500
     ttccctggat gtgaaggatc acaaactgct gcttcttcaa gaggtaaccg gcctcatttc      4560
     cacttgggtc acatcgattg tggaggaagc cgattgggac tatgagcgag ccctaaaatt      4620
     gttcattcag atgaacgctg atcacgaaat cccagatcta gcattcgcct agaatatgtg      4680
     atctcgttgg actgcgtgct ggactgcggc gcatgctttc cctcccgcca gagacgggat      4740
     gcgcgcatca ggatcgacgg gacagaccgg ccgacgtctg gcttcacgtc ggcatctatg      4800
     cgacgacgtg ataatcagct tcacagtacc tgcggatgag ggcacaggcg ccagtcctct      4860
     gcctagcgac acatacacca acagcaacat ctaaaacagt cgcagtagat gcagggaatt      4920
     ttcttgctgc agtctccaac tggaaaaatc cgacggccca actcctagct tggcccggcc      4980
     aatcttcttg gactggcaaa cgatgtgatg aatcgtcctg gaagaaagaa gcatggatta      5040
     tttcttcata cacagcttgt ctactaaaat gcatttcccg gcaaactggc actggggcgt      5100
     tgaaaatacg acactactca ccaaacagca gcaaaaacaa cagcatcggc agcaggcgac      5160
     cagcagctgc tttggctcac ccaatgcgac agcaatatct gcggcgtggc cagcaacatg      5220
     cagcaagcaa aagaccggca tggtggtgaa caacatatcg ctcacgccca acgatctgga      5280
     agccctgagc tagggaactg agtatccgcc agcggatact tatgcagcgg cgaggcgtcg      5340
     gaaatccgat agccggaaga gaggccggag cagcatgttg ggcattttcg ccccagtagc      5400
     agctgctggg gcagcaaggg cagaggtagc agtgtcagcg ctcctggaaa accggccttt      5460
     tctgttgaag acgcgggact gcggcgcaat tgttcctgcc aaccgggagt tctctgcgcc      5520
     tgaggtcctt ttgtgcttca gcggctccat ctgctgttgc atctggcgct tctccaactt      5580
     tcctccctga aagaagagaa tattagtagg agcatgagac caacaacagc catagcttac      5640
     cacggcagcg gaaacagcaa ctgcagaagc ccggtaactt tctgataata tgcagcaata      5700
     agagcggctg gatcagcatg ttgtgtagct tggccccaga agcagcagct gcggtaccaa      5760
     aggcagcgga agcagggtca acatagtctg ctatgctgtg tccataccag catagccaat      5820
     tcagcgatgg tgtttctgcc gcaacagctg atccacaggg tactgcctgg aatgtagtgg      5880
     caaaatcggc agcaggcctg ggcgtaggag ctagtttcac caacaacatg gatcccagac      5940
     gcactcattc ttccggtggc ggcatgctcg caaagtagcg gcggcgcatg caactctcga      6000
     aacggcagca gcaacagagg cgtctcttag atgcagcggc ggcactggcg acagtcctca      6060
     tttctgcagg cccattaggc ggcgacacat tcaccagcag cagcagggag attttattgc      6120
     caaagtcgcc aattggtagt atcctacgac tcgactcatg tttgacccat ggctgatcat      6180
     cacataccga caagcggtgg ctgttttaca ctctggaaga aggaagatta gattaatttt      6240
     tttcccattc tcacacattt tgtatatcga actaggcggc gacacactta ctagcatcag      6300
     caacaacaac aacagcggca gcagttgcag gaaatgatct cacagcaaaa tccaattggc      6360
     acattccgaa gtcccgtact cctcgccggc ccactggcca gaaacagggg cctgcgcgat      6420
     ggtgatgaca acgataaact gcccgtttat cggcgtcaag atggtctcgg ccctgcactg      6480
     gccacctgac cggtgccagt acggcaacaa ctgcaacgga ccatgaatac aataggaggc      6540
     actggcgacg cttctcagtt ttccaggctc atgggacgaa gacgcagtaa tcggcgacag      6600
     aaacagcaac agaggcggca gaagtaggga atatttatcc gcagtcgcca aattattgta      6660
     taggaaacta ctttcggaca accggcttga cttcctattg atgaccacgg atggcgcttc      6720
     attttttctc cttacgatct caaaaatcgg tgcgcctgca gcctgcggat gcttaaagct      6780
     gcccaaggtc gtcctttcgc ataaagatag gcttcctggc tgcttcggcg gatgagccac      6840
     acccgaatag agagtgaaga agccccagca agtcgcccta aaataaaaga aacaagcatt      6900
     agactcggct caaattggaa catccgtcag actgtactca cgcatacact cagacaaacc      6960
     caagcctatt ttattgacga cgcggactcc ggcacatgtt ttcctccata aaaggctgtg      7020
     agtacaacca aagttgacgg gccacgctgg ccgatgcttg ctgcataccg gcatctccgc      7080
     agcaggcacg ttacaagcac cactgaaagt agaaacaggc ttactatagg caaagcgcag      7140
     aaaaacaaat attacaataa gatatagcac gcgatttttc tgcttcgttt ccgctttaca      7200
     agtgagacca ttctccctat atgccattaa cactgacaaa cgcgagtaat taagggagaa      7260
     atactggaat cccaaaaata ctactagtat atttgcccga taagcgatat gctggcggca      7320
     aaaaaaaaag ataatagccg ataagcccgc caaaaaggcg cgaaatatcg ataacaagct      7380
     ggcacgaaaa ttgctagcat atcgatcaac cgccgtgtca ttgagctatc gaaaaagccc      7440
     gcctacgcgc ctagcccaaa tttgcaagtc agttgagatt ataaaaccga cagaggcgcg      7500
     cgcgcaacag tagctaaaag tgaagccagc agcaacaaca acaactaatg gacggccaga      7560
     acgtgaacca aagcggagga tgggcatcgg ttttatccat ctcatcggac gatggtaact      7620
     gctcatcctc gccgccatca gctatagtct catcgctgga taccaagtca tcgctcaact      7680
     ataccttaaa attactcacc aaaactattt tctccttttc cataagacaa agtaaagtaa      7740
     agtaaagtaa agtaaattaa agtaaagtaa agtaacgtaa agtaacataa tatttaaatt      7800
     taaattctac acttgaacaa tggcgcgcaa aactgccgca atgtaattca aaaatgtctc      7860
     ccgcaaattt aaaacataga ttaatacttg taagtatggc gcacatatct gcggccaaga      7920
     aatccgaaaa tgtaatttgc cacaaattgt cactatatat ttttaagcaa aaatcagagg      7980
     acaataaatg ccagcgtcat tagacgttga aaatatttaa aaaaaaaaaa aaaaaaaaat      8040
     ttcaatgttt tttgtaaatt aacttaaatt gttaaatgta aacaagcctt gcaatatgtt      8100
     aatgttacca gtccatgtta ctgtctaaaa gccaagaata caaaaaatac taattataat      8160
     ctaactcacc acgcccaagc cccaaactca ccccatgcaa tgttaaacct ataaattcaa      8220
     ataattgtac ctatatattg cacatactgt aatcaaaggc aaaataaatc gtggatgcgg      8280
     aacagaattt actctgtctc cgtacctccg ccagcaaagt taaaaaagct agatcgatac      8340
     aataaaggat tagtgcggca gaaacatgat gaatataagg tgactcgctg cagcaattta      8400
     tgcacaacgt cacttacctg aactttcttg ccgcacgatc tctgttatca cagctgcaat      8460
     ctactagtaa tgccgcgctg caacagacgg gctacacaaa caaaacaatt aattagtaac      8520
     aaatcaaata aaacaataaa ataatgcact tacctcaatg aatacagcta atctctgacc      8580
     cacatccaat gaaacagaca aaaggagaag ggcccgcaaa cgcaaaataa aatcgccaac      8640
     tatgcgataa taaacacaaa aaattgacaa ttttgcgatg ccgtctccga ctcctgatgc      8700
     cactgcactg acaaggatca ctagcaagga gctgacatta cattaaaaag ctgcaaaatc      8760
     cgtccgcaaa tttcatattt ttcctcagta tcgtatcgtc aatgattttc cgacaacctg      8820
     aaaggaaagg aaaattaata agaaaattat acaaaacata ttaaggacac agaaaatagc      8880
     aaaccagaca ggcaaactaa caaatacaaa tatgtgactc catcctgctg acgacacaca      8940
     agtaaatcct tcaacgcaac cgacaacagg aaacgggcct tgcaaaagca aaacaaaatc      9000
     gccaaatttt gcgattataa acacaaaaaa ttgacaattt tacaatgccg cctgcacctc      9060
     ctgttgccac tgcatcaata aggatcagta gcgcggacgt gatgccactt taaaaagctg      9120
     aaaaatccgt ccacaaaatg tatactcttc ctcagtatca tactgtcaac gaacttccac      9180
     taacctgcaa tgaaaggaaa ataaataagt atatgataca aaacaaacaa aggacaatct      9240
     aaaattagca aaccagacag gcatacaggc atactagcag atgctaatat gcaactccat      9300
     cctgctgacg acaaccacgc aactcctttc tccaagaccg caaatactga cacaaggaag      9360
     cacaagctaa aactgggaat tatttatttc aacaaaatac ttatctaatt gccaattcga      9420
     cgactccaaa tccgcggcac accggcggcg atggcccata aataaagggc ctcctaataa      9480
     attacaaaac gtacctgaaa aatcaaaaat taacgcaacc ataaaaacaa aaacaatcat      9540
     aacactcacc ttcagattag cttccaccta atgtacctga aatacaaaaa caataattaa      9600
     cgcaattaat aaatcaatta aatacaagta taacacttac ctccaagcta atgtacctga      9660
     aaaacaaaaa caaaaaaaaa ttaattcaat aaataaatca aataaataca aatataatac      9720
     ttacctccaa tttacctccc agccaatgta cctaaaaaaa aacaaaaaat ttaatacaat      9780
     cttaaaaaca aataacaaat gtaatactta ccaaatttta attttgtatt catttccatg      9840
     accccaacgc tgcaactgtc ctcggcaaca attcctgttc cggcggctcc atgctgccaa      9900
     tcctgacgca ctggccacaa gacgcggcgc tgctggcaat ctctcgatga acaaccgatc      9960
     tacaatttcc atgacgactc ctcagtcacg atgagacaga agacaccacc aacgccagca     10020
     gctccaaaac aatacacgac ggccgcgcgg aacccatctt cagaattccc tcttcctgac     10080
     gaccggcgaa gcagttctgg aataaacaat gtattaattg caaacatcta ccgatgaggg     10140
     tagaagagat actcaccaaa cgactgcggc gcgggaacaa actaactgca acgccggccg     10200
     gacctatttg ttgcaagtgg cgcgcatcca gcgccagcaa catagctcca gcccaagtac     10260
     aacaacaact tacctgcaac gtctccagag gctcccagcg aatcggtgct tccgtccttc     10320
     tggcgggggt acctgaaaag aaacaaatta agcaacatca gtcctaaatt tcaatgtttt     10380
     tctgtaaaat aatttaaatt gttaaatgta aacaagcctt gcaatatgtt aatgttacca     10440
     gtccatgtta ctgtctaaaa gccaagatta caaaaaaaaa aaatactaat ttacaaacta     10500
     actcaccacg cccatacccc aaactcaccc catgcaatgt aacactcaaa aactcaaata     10560
     attgtaccta tatattgcac acactgtaat caaaggcaaa ataaattgtg gatgcggaac     10620
     agaatttatt ctgtctccgt acctccacca gcaaagttaa aaatatgcgg catcgtgcta     10680
     atcagctccc ccatgctgag cgagatcttg atgcggcgat gcactcacta gcgagcagcg     10740
     ggaacagcat acagcgtcag caacagcagg aagagacttt gtagcagaag cctttcggca     10800
     ttctccgacg acccgactcc tcgatcgggg tcaggcaaat ttggaccgac aaattttccc     10860
     ggcgtttcgt cctggaataa ggaaggaagc acggattaat ttctcccctt cagcttacga     10920
     ccccatgcaa tgtaacactc aaaaactcaa ataattgtac ctatatattg cacacactgt     10980
     aatcaaaggc aaaataaatt gtggatgcgg aacagaattt attctgtctc cgtacctcca     11040
     ccagcaaagt taaaaatatg cggcatcgtg ctaatcagct cccccatgct gagcgagatc     11100
     ttgatgcggc gatgcactca ctagcgagca gcgggaacag catacagcgt cagcaacagc     11160
     aggaagagac tttgtagcag aagcctttcg gcattctccg acgacccgac tcctcgatcg     11220
     gggtcaggca aatttggacc gacaaatttt cccggcgttt cgtcctggaa taaggaagga     11280
     agcacggatt aatttctccc cttcagctta cgacccttct caccaacagc agcaactaca     11340
     acaacatcgg cagcagacga cttgcagctg cttggctcac ctaatgcgac agcaataatc     11400
     ccggcaaggc cagaaacggc accgagcaga agcacgacag ggtgaagaac aacatgccgc     11460
     ccacgtccac caatccggaa gccctgcatt aggggtctga agcgccatta actggaggat     11520
     ccggcagcgt atgcctacgc agaagcgggg cgtcgtaaat ccggtggccg gaatagcgcc     11580
     ttgaacagca tgctgtgtat gtttgcccca aaagcagaaa ctgccgcagc aaaggaaccg     11640
     caagcaggat catcactcgt ggcaaactgg cgtattcctg ttgaagacgc gggactgcgg     11700
     cgcattcttc ctttccaacc gggggcttta gcgcctgcgg tatttctgct ttcacggctc     11760
     catttgctgc tgcacctgac gcctcatcag cgctcctccc tgaaagaaag agaatatgta     11820
     ttagttttct ttccattcct tacaatctct ctcaccaaac ctccacgaca caacaacagc     11880
     agcagaaaca ggtctagccc acaatggcag cagctacagc aatcagcaga agcaaggccg     11940
     gcaaaagcaa caacaaaagc cctctctgaa agcccggatg tggagactga agcgccggaa     12000
     acttaaggat ccgcccccga tgcacgccca ccaacaataa gctggaggag aagttactga     12060
     agcatgggaa gcagcaccag gggtcgcata cgcagcgtca gggctttgcg aaccagatga     12120
     atgaggagag actggaacag cataacatca gcggcagcaa caacagcgcc agcagggtca     12180
     gcggcgtctg catggctgtg tccaaaacaa ctccaattca actgctgtat gatgcagcgc     12240
     accagcggct ttcacaggga ccgtctgaaa cgcttggcag gagccggctg aaggcctggg     12300
     cgaagacact ggagacacca atgcgcgtcc tttcggccgg cggcaacagg cttgccatgc     12360
     aataagaaca gtaaatcctg aaataacagc agaagataca gacgtccaaa ttgcgaacgc     12420
     tgacgccagc cctcacctga acgactcact gtgcagcagc agcaacatca gcaccgatgc     12480
     cctcagcatc ggcagcagag ggtgtttttg gcctttgaca attccctgcg acttgacttc     12540
     ttcttggcac ctggtcaatc atcacgtgcc agcaaacagt ggcttgtcac cctggaagaa     12600
     agaagactgg attagtttct ccccttctaa tacattttgt gtgttgaaat gcatcaggcg     12660
     gcgacacact caccagcaac agcagcaaca acaccagcgg caccggtagc aggaaatgga     12720
     tcctcagcaa aaaccatcgg cactttcaga cgtcccgtac tcctcgcctg gccctggccg     12780
     gtaacagggg cttgttagat ggagaagacg acggtcatcc gacggacagc agcctgaaga     12840
     tggaagcagg cctacgctgc ccacctctcc gatgcctgca gcagcaacgg cagcggctca     12900
     taaatgcaaa ctggcgccag ccctcggctc ttcgggctca tgtaggcggt gacacactca     12960
     ctagcagcta aaacagcaac ggcggaatta gcagaaggca atgttttgcc gcagctgcca     13020
     gatggcatac tcctagcttg gcccctgccc aaaccgtatt ggaccggcaa atgattcgac     13080
     aatccgatct ggaaaaaata agtattgatt aatttttccc ccacagattg gtataaaatt     13140
     gcatttacgg ccaaccggct tcttcctgtt gatgacgtca cactgcgccg catgcttttc     13200
     gccagccaca gttggaatgc atgcattggg gttgacggtc tggatgggcc gttgcctgtt     13260
     atatgctggc atctccgcag cggcgttgtg agcaacgaca ctgaaagcaa caataatatt     13320
     gttaattact gctcaaaact ataacacatt taatcactta cacaatttac acacgcttcc     13380
     tgcctaggag ttgtgggacc agctaccgat aatgccaaca ataccgggaa acgcgtcgcg     13440
     ggacatcgat aacaatttgg cggttaaaat gctagaacat cgagtaccag acatgttttt     13500
     cctgccgata tatcgaagcc caatagcccg ccaacgctca aaacataaat cggagtgtga     13560
     gaccagatac cgaagccgtt aaaagcttcc cggtatatcg ataacaattt ggcggtaaaa     13620
     atattagaac atcgagtacc aaccatgttt ttttttttcc ttccgattaa tcgaagtcaa     13680
     acagcccgcc aacgctccaa atttaaatcg gagtgtgaga ccagctaccg atgccggtaa     13740
     aagcttcgcg ggatatcgat aacaatcagg tggttaaaaa tactataaca tcgagtacca     13800
     gccgtgtttt tcctgtcgat ttatcgaagt ccaacagccc gccttcgctc cgaacacaaa     13860
     tcggcaagtc agtagctttt ttaacccggc agtggcgcct gtgcagcagc tatttaaagt     13920
     gaaaaacacg aaacgcaaca acaaaatgga cggccataat ggagacataa atgaaggatg     13980
     ggcaacagta ctatctatct cgtcggatga tagtaaccaa ctttcgtcgc cgccgtcaat     14040
     tatagtctca tcgctggaca ccacgccaac gcctgtctaa tgcaaatcaa cttacatatt     14100
     actctaaaat ctacttataa ctgtcccctc taatgataag caatttttat gtttacttta     14160
     aacttaaacc gataccttaa actatggcgc gcaaaatgac taccaagaaa tctaaaactg     14220
     taaattgttg caaactattt ctcctagtaa tgttaaattt aaaagcgcgc ataatcgcag     14280
     ccaagttaac caaaaatgtc tctcgtaaat gtaattccta aattaacact tgtaactaag     14340
     cgcgtataaa taccgcaaat ccaaaaatgt aaatatgcca taaattgtta ctatatattt     14400
     tttataaaaa aatcagagta caataaaaat gccagcgtct attaggcgtt gaaaatttaa     14460
     aaaaaaaaaa aaaaaaa                                                    14477
//
ID   DMHMR1      repbase; DNA   ; DRO   ; 782 BP.
XX
AC   X52809;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. melanogaster DNA non-mobile heterochromatic moderate repeats
DE   (HMR family).
XX
KW   Repetitive sequence; Heterochromatic moderate repeat;
KW   HMR repeat family; DMHMR1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-782
RA   Shevelyov Y.Y., Balakireva D.M., Gvozdev A.V.;
RT   "Heterochromatic regions in different Drosophila melanogaster
RT   stocks contain similar arrangements of moderate repeats with
RT   inserted copia-like elements (MDG1).";
RL   Chromosoma 98, 117-122 (1989).
XX
DR   GenBank; X52809; Positions       1     782.
XX
SQ   Sequence 782 BP; 190 A; 185 C; 190 G; 217 T; 0 other;
     tttttatttg aatttgggcg atttgagttg catcaaggcc ttcaggtgca accgaaagcc        60
     taggtactgg aagtgcaagc gctttgttta gaaaacaacc aggactatat tcggagaatt       120
     acttaccgtg ggtcgtccag gggcgatctc aagttcggca gcagcgagaa gaagatgtcc       180
     gggaagctgg gcccgaacat cgctccgtcc agctgtgtat cagacttcgg atgaaagttc       240
     tttttacacc gtgggcagta gatcttgacg gttgacttcg cccatacatc gctgaggccc       300
     actggcaggg tgttctgcta tcacaggaga tattgggaca cgattcaaaa tctccttgca       360
     tattatttcg gtgcatagca atcacgccac gctctgactt gatgtatcgg gcgtgaatca       420
     tgccgtacca ctttttttca tcgccgtaca acaagccaga ggaactgtcg atcaccggct       480
     tcaggatcac gtccagtatc tcgctgaaat actccaagcc catctggttg aacgtatcct       540
     gcacgtagtc ggtgggcacg cgggagaggg actcgttgcc cttgatcccg aggaaccaat       600
     cgatccagct gctgttgttg ttctggctac aagattttac tgtgacttgc tataatttct       660
     ataggaaaaa cctagttact tacgagctca acatgttgcc agtttacttg ttcacagaaa       720
     tatgacttgt agacttcaaa gtcatcgtct tcttctttga cttttgacac gtgctaaaag       780
     gc                                                                      782
//
ID   DNAREP1_DM  repbase; DNA   ; DRO   ; 594 BP.
XX
AC   .
XX
DT   02-JUL-1999 (Rel. 4.06, Created)
DT   02-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   DNAREP1_DM is a putative nonautonomous DNA transposable sequence.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; ARS312_DM;
KW   DNAREP1_DM; FORK_DM; nonautonomous DNA transposon.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   284-477
RA   Selick H., Kauffman S.;
RT   "Direct submission.";
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania.
XX
RN   [2]
RA   Tudor M., Mitchelson A., O'Hare .K.;
RT   "Direct submission.";
RL   Unpublished (1991).
XX
RN   [3]
RP   1-594
RA   Kapitonov V.V., Jurka J.;
RT   "DNAREP1_DM.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
CC   DNAREP1_DM is one of the most ambiguous repetitive elements in
CC   the D.melanogaster genome. There are several thousand copies of
CC   DNAREP1_DM in the genome. The average divergency between
CC   DNAREP1_DM
CC   copies and the consensus sequence is 20%. Presumably, DNAREP1_DM
CC   has been mobilized in a common ancestors of Drosophiloidae since
CC   its old age (>20 Myrs) and presence in different drosophilas.
CC   It's possible that DNAREP1_DM was active in Brachycera since
CC   significant part of DNAREP1_DM has been found in promoter region
CC   of P450 gene (U09343) in the house fly genome [3].
CC   DNAREP1_DM is classified as a nonautonomous DNA transposon
CC   because of noticeable conservation of its termini and multiple
CC   internal
CC   deletions [3].
CC   Previously reported ARS312 repeat [1] is a ~200 bp-long portion
CC   of
CC   DNAREP1_DM. DNAREP1_DM is a portion of FORK_DM direct repeat [2]
CC   flanking forked gene suppressor (portion 435-949 of FORK_DM is
CC   88% identical to DNAREP1_DM. FORK_DM has been removed from
CC   Repbase
CC   Update since its other portions are not repeats [3].
CC   Putative relation of DNAREP1 to DNA transposons is also supported
CC   by the 79% similarity [3] between its 145 bp-long 3`-terminus and
CC   134 bp-long 3-terminus of P-like P_DG element in Drosophila
CC   guanche.
XX
SQ   Sequence 594 BP; 182 A; 99 C; 133 G; 180 T; 0 other;
     aaacaagaga gaatgctata gtcgagttcc ccgactatca gatacccgtt actcagctag        60
     tgtgaatgcg aacgcgaaat ttcataattt ttctgggata tcgatagata ttggggaata       120
     aaatgagaaa aaatttaaaa atttttcaaa agtgtgggcg tgacagtttt gggcggcttt       180
     agggcgttag agtgggcgtg gcaaaaagtt ttttggcaaa tcgatagaaa tttacaagac       240
     taataaaaat atgaaaaata tcaaaaaatt ttttcaaaag tgtgggcgtg gcagttttgg       300
     gcggtttgtg ggcgttagag tgggcgtggc aacatgggtc aacaaacttg cgctgcgtct       360
     atgtctctag aatctgtatg cttaatctca accttctagc ttttatagtt cctgagatct       420
     cgacgttcat acggacagac ggacatggcc agatcgactc ggctattgat cctgatcaag       480
     aatatatata tatatataaa tatactttat atggtcggaa acgcttcctt ctgcctgtta       540
     catacttttc aacgaatcta gtataccctt ttactctacg agtaacgggt ataa             594
//
ID   INVADER4_I  repbase; DNA   ; DRO   ; 2413 BP.
XX
AC   .
XX
DT   24-JUL-2000 (Rel. 5.06, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 1)
XX
DE   INVADER4_I is an internal portion of INVADER4 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   endogenous retrovirus; GYPSY superfamily; INVADER group;
KW   INVADER4_I; INVADER4_LTR; gag/DNA binding protein.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2413
RA   Kapitonov V.V., Jurka J.;
RT   "INVADER4_I.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
CC   [1] (Consensus)
XX
CC   LTR of INVADER4 retrotransposon is listed in Repbase Update as
CC   INVADER4_LTR. INVADER4 has populated the D.melanogaster genome
CC   recently since its proviral copies are almost identical and
CC   flanked by identical or 1% divergent LTRs.
CC   It was transposed in a nonautonomous mode. It encodes only
CC   the gag-like DNA binding protein protein.
CC   INVADER4 generates 4 bp target site duplications upon its
CC   integration
CC   into the drosophila genome.
CC   INVADER4 belongs to the INVADER group of GYPSY-like retroviruses,
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER1, INVADER2 and
CC   INVADER3. INVIDER4_I is ~60% identical to the INVIDER1_I and
CC   MICROPIA_I consensus sequences.
CC   GAG/DNA binding protein:
CC   MAALEAQNRNLMEIIRTMHAPRASASNEKSLHVTLPKFCADSAGADPSAWCTTVDLIFADNA
CC   LVGSALVIALSKALEGSASQWLSQICFAGITWPQFKELFIQRFVGMETSAAILMNVLNGRPT
CC   PGESFAQYGSRIVTLLLSKWKAKDLEEIAVSVALAHMAQIDNNLLRWVFTTNVATRNELQQQ
CC   LQAYAFKKRNNEDDSGPEKKLRMQLQTMCHFCGKAGHKFAECRARKEGTSNTKGRNYSESNT
CC   PGLKDRSNIKCFKCDEMGHVASVCPKGHNKYIEKRVDVCETK.
XX
SQ   Sequence 2413 BP; 766 A; 411 C; 601 G; 635 T; 0 other;
     tcagaagtgg gatcgccttc gccacaagag accagatctg atcagtatat ggctgcgttg        60
     gaggcacaaa accgtaacct catggaaata ataagaacca tgcacgcacc gagagcatcg       120
     gcgtcaaatg aaaagtcctt gcacgtcaca ctgccaaaat tctgcgctga cagcgctgga       180
     gcagatccat ctgcatggtg caccaccgtg gatttaatct ttgcagataa tgcgcttgta       240
     ggcagtgcac tcgtaatagc gttaagcaaa gcattagaag gcagtgcatc gcaatggctg       300
     tcgcagatat gcttcgctgg catcacgtgg ccgcagttta aagaactgtt catacagcga       360
     ttcgtaggaa tggagacgtc ggctgctatt ttgatgaacg ttttgaacgg acgtccaaca       420
     cctggagaga gctttgccca gtatggaagt cgcattgtca ccttgttgct gtctaagtgg       480
     aaggccaagg atttggagga gattgcggtt tcggtagcgt tggctcacat ggcacaaatc       540
     gataataatt tgttgcgttg ggtgtttacg actaatgtgg ctacgcgcaa tgagcttcag       600
     caacaactgc aagcttacgc cttcaagaaa cgtaacaacg aagatgattc tggcccagaa       660
     aaaaagttaa gaatgcagtt gcagaccatg tgccattttt gtgggaaagc tggccacaaa       720
     ttcgccgaat gccgtgctcg aaaggaaggt acatcaaaca caaaaggaag aaactacagc       780
     gaaagcaaca cgcctgggtt aaaagatcgt tcgaacataa aatgttttaa atgcgacgaa       840
     atgggacatg tggcgtctgt atgtcccaaa ggccacaaca aatacatcga aaagcgagtt       900
     gacgtgtgcg aaactaagtg agccaagtgg actgtgtttt tcaattgggt gagccctttc       960
     catttttttt tttgattcgg acgccgaatg ttctttaata aaattaaaat aaattaagta      1020
     acaaattaag agcttggttt cgttttattt attaaatcta ataaatttag tatgtacaaa      1080
     tccaaagtta tcaaagccgt tcaaaataat gcacatgaga atagtttgga aatactcttt      1140
     gacatcaata tagaagtaag cgataatgat aaatgtaaat taagaaatat attggaaaag      1200
     tatgccgata gtttcgtaac tggaatacca aataaggcgc attgaaaatt cgtttaagta      1260
     ataaaaataa aagtgttcaa gggcgcccat agcgactcag tttccattgc tacagatttt      1320
     ggatcaaata gatcgtttgc ggtgtggtaa atattttttt catttgtttt agacatggcc      1380
     agcggatttt ataaaatacc gattcatcca gattctatag aagagtcaag tatgtctttc      1440
     cttagagctc ccagtcgcat catagtggat caaggcagaa gctttgtcag caacaagttc      1500
     cgtgagcttt gttcaacaaa caggattgag ttgttttcaa tagctacaga tgccagcaga      1560
     gcaaatgggc aggttgaaaa caaatgagcg tccaagcaag gaaaacatgc gaaaggatgt      1620
     agagtagttc ggtatgaggt catgtgttaa gtgagaagta tcatcgagtg attaatgtac      1680
     tagatggtca tcgacacaat ttgaagtcgt tagttatcaa gcgaacatat aaatattcgc      1740
     atgaatgtaa tggtgactcc caacagagaa aagagttgaa ggatggcact agtgatcgtg      1800
     catctgtgtc ccaagagaga aaagagttta aagatggcac tagtgatcgt gcatctgtgt      1860
     cccaagaaag gaaacatttg gcgaactgtt atgaatagaa tggcgtgtga ccgcactata      1920
     acagctaact cgcagggacg agaagtgtta tggcgggggt caagtgatga tgactgcact      1980
     ataacagcta actcgcaggg acgagaagtg ttatggcggg gttcaagtga tgatgactgc      2040
     actataacag ctaactcgca gggacgagaa gtgttatggg gggggtcaag tgatgatgac      2100
     tgcactataa cagctaactc gcagggacga gaagtgttat ggccgggggt caagagattg      2160
     ggtgtgagag aagacacgcc aatgttatta tgagaaatta aagtcatgga aaatgtaaat      2220
     agtttgaagt tttgatatgt aaattggaga tgtctttgtt aaagaaaaat cagtcatgag      2280
     atgaattgtc aattaaataa ttactgatta ttacttgttg tcattaattg ttcttaagtt      2340
     gacgaagttg tgtgacttgg acttgattgg tggattaggc acacgaggga cgtgtgaaag      2400
     gtcaggaagg ccg                                                         2413
//
ID   TRANSIB1    repbase; DNA   ; DRO   ; 1816 BP.
XX
AC   .
XX
DT   31-JUL-2000 (Rel. 4.2, Created)
DT   31-JUL-2000 (Rel. 4.2, Last updated, Version 1)
XX
DE   TRANSIB1 is a DNA transposon, a partial consensus sequence.
XX
KW   DNA transposon; transposase; TRANSIB family; TRANSIB1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1816
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB1.";
RL   Direct Submission to Repbase Update (JUL-2000).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB1 belongs to the TRANSIB family of DNA
CC   transposons. It has generated duplications of the CANTG target
CC   sites upon its integration into the genome. TRANSIB1 has 40-bp
CC   terminal inverted repeats and it encodes putative transposase
CC   which is not similar to any known transposases.
CC   There are ~20 copies of TRANSIB1 which are ~94% identical to the
CC   consensus sequence. Putatively, TRANSIB1 lost its activity
CC   several
CC   million years ago.
CC   Putative TRANSIB1 transposase:
CC   MKNLAKCNRTIEALKKKHSSWLSSTMMVVVDQNNNQVASDCLMGRPRLSYSDAGSRLKRKIATDLANIEE
CC   NNTSLLVHAASISAKKEKMGDTAFVLKQTISTSTASTEIRKKLIFSEPVPLTPIQALAFLIDSSLSKAKY
CC   NDMRALNKTQFSNIYPSYNKVREAKLACRPAGVHVTETFAQVSFQNLLNHTASRIILMHYSYPWIHRILY
CC   FQA.
XX
SQ   Sequence 1816 BP; 626 A; 308 C; 309 G; 571 T; 2 other;
     cantgcacac tgggccagat tccctttttt tttggcataa agtcaaaaaa ttttgtaaat        60
     tgtattttga atttaactat atattatgaa agagcataga ttagggacac caaaacgata       120
     tttaaaaaca tttaagttgc aacactgcat tttttatgcg atatcaaatt catatgtttg       180
     atcagctgtt tgttcaagca aaattggcgc gaaactttta ctcaactttg tgattctgtt       240
     aaaaatacac cacgtgtcca aatattttca aataaaatgg aatataaagg tcaaggtatg       300
     cttaatatag atataactta ctgatttaga attatgtgtt ccatgttgta attgttgttg       360
     tctttgttta cgtcttagtt taggcaaaat ctaaccaaag tgttcgtcta ttgtggagtg       420
     agaaatgatt tgtgccaact tgtgccaaaa actaataact gatgtgttta ctcaaaactg       480
     taattaaatt gatgttagta acgccttttg cctaaatttg cctatgctct ttatattttg       540
     ccgtttaaga caagtttgag attagccgat cggttctgct ggatgaatgg atcaaaggag       600
     atcgaaatga caaagcctta gttgactggg ttgttggcga atttaaatta aatgatatta       660
     ctattgacga gaaagctaaa atcgctaagc aaatcagaag ctttcaccta tatataatga       720
     aaaatctggc taaatgtaac cgtacaattg aagcattaaa aaaaaaacat tccagttggc       780
     tttcatccac gatgatggtt gtcgtggacc aaaacaacaa ccaagtcgct tcagactgtc       840
     taatgggacg acctcgactc tcttacagtg atgcaggatc acggctcaaa agaaaaatag       900
     caacggatct ggctaatatt gaagaaaata atacaagtct tcttgtccat gcagcatcaa       960
     tttcagccaa aaaggaaaaa atgggcgata ctgcttttgt attaaagcaa accatttcaa      1020
     cttcaactgc atccactgaa attagaaaga aattgatatt ctcagagcca gtaccgctca      1080
     caccaattca ggctcttgca tttttgattg acagctctct atccaaagca aaatacaacg      1140
     acatgagagc tttgaacaaa acacaattta gcaacattta tccatcgtat aataaagtca      1200
     gagaagctaa attagcgtgt agacctgcgg gagttcatgt gacagagacc tttgcccaag      1260
     tatctttcca aaatttgctg aatcatacgg ccagtcgaat tattcttatg cattattctt      1320
     atccatggat tcatcggatc ctttactttc aagcctaaat ataaacaaaa gatcgtctca      1380
     aaataaaaaa atcgctttgc cgaaagaagt catcaatctt ttagatgcac caaatgtaga      1440
     acatattaat aatgaacatt tttgggaagc gatgatagcg actcggattc ggatcacgat      1500
     gatccatttt ctatgcattt ggacgtagaa aattttgatt aatataatag tataattata      1560
     tgtatattaa atagatacat aagaaaaatt cagcttaaat ttattatatt aattaataaa      1620
     aagaaataat catgccaaat ctactcctta actttatatc ctaatatggg cggtatgggt      1680
     gggcgtggtc cgatttactt gaaatttcac gtacgtattt taaatgtcaa atgcaccaat      1740
     tctacaaaaa tgcagctctc tagctttatt atttgacttt atgccaaaaa aagggaatct      1800
     ggcccagtgt gcantg                                                      1816
//
ID   TIRANT_I    repbase; DNA   ; DRO   ; 4352 BP.
XX
AC   X93507;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   D.melanogaster LTR retrotransposon Tirant - an internal sequence.
XX
KW   LTR retrotransposon; GYPSY superfamily; TIRANT_LTR; TIRANT_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4352
RA   Viggiano L., Caggese C., Barsanti P., Caizzi R.;
RT   "Cloning and characterization of a copy of Tirant transposable
RT   element in Drosophila melanogaster.";
RL   Gene 197, 29-35 (1997).
XX
RN   [2]
RP   1-4352
RA   Caizzi R.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (27-NOV-1995)R. Caizzi,
RL   University of Bari, Institute of Genetics, Via G. Amendola,
RL   165/A, I- 70126 Bari, Italy.
XX
RN   [3]
RP   1-4352
RA   Caizzi R.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (14-JAN-1997)R. Caizzi,
RL   University of Bari, Institute of Genetics, Via G. Amendola,
RL   165/A, I- 70126 Bari, Italy.
XX
DR   GenBank; X93507; Positions     416    4767.
XX
CC   The 5.3 kb TIRANT present in the GenBank sequence X93507
CC   possesses
CC   identical 417 bp long terminal repeats (TIRANT_LTR in Repbase) at
CC   both ends. There is a serine tRNA binding site downstream of the
CC   5' LTR sequence and a polypurine tract upstream of the 3' LTR
CC   end.
CC   The insertion leads to the duplication of a host-site CGCG
CC   sequence.
CC   In situ hybridization to salivary glands chromosomes showed
CC   evidence of the mobile nature of the element. The DNA sequencing
CC   of
CC   the cloned 5.3 kb element revealed that TIRANT possesses an open
CC   reading frame (ORF) that shows similarity with the envelope
CC   protein
CC   encoded by the gypsy and 297 retrotransposons. In addition, the
CC   cloned
CC   element appears to be a subgenomic fragment of a not yet
CC   identified
CC   complete element, because only the integrase domain of the
CC   reverse
CC   transcriptase gene is found [1].
XX
SQ   Sequence 4352 BP; 1589 A; 998 C; 683 G; 1082 T; 0 other;
     ctggcgcagc cggtaggatg tcctacctat taataattac ctacctgtaa gtaaacatgt        60
     aagaaacgaa acaaactata tgcaagatgt cgactgaaag tgactaggaa caaattttta       120
     taaaacaaaa ttgaagttgt gaagtaccaa atgaaactca aacatatatt caaacacagg       180
     aaaaaaaaaa gagagaggaa aaatgtaaaa taaataaata tacaaaaaaa gtgcatgtgt       240
     accgtactgc cgcgctgacg tggaatctat cgctgatcat cacgccatcg gtatgtccat       300
     actctgccaa acgtcataat ttttataaaa aagtgcaagt gtaccgtact gccgcgctga       360
     cgtggaatct atcgctgatc atcacgccat cggtatgtcc atactctgcc aaacgtcata       420
     attttttata aaaaagtgca agtgtaccgt actgccgcgc tgacgtggaa tctatcgctg       480
     atcatcacgc catcggtatg tccatactct gccaaacgtc ataattttta taaaaaagtg       540
     caagtgtacc gtactgccgc gctgacgtgg aatctatcgc tgatcatcac gccatcggta       600
     tgtccatact ctgccaaacg tcataatttt tataaaaaag tgcaagtgta ccgtactgcc       660
     gcgctgacgt ggaatctatc gctgatcatc acgccatcgg tatgtccata ctctgccaaa       720
     cgtcataatt tttataaaaa agtgcaagtg taccgtactg ctgcgctgac gtggaatcta       780
     tcgctgatca ccacgccatc ggtatgtcca tactctgcca aacgtcataa gtttttataa       840
     aaaaaaaaga gtgcaagtgt accgtactgc cgcgctgacg tggaatctat cgctgatcat       900
     cacgtcatcg gcacttacat acgctggcca acgcatcgcc aaagcctcta tatacactta       960
     tatatgtgag catacaatat caactacaat ccaatacatt cacgtactgt accgcctcgt      1020
     tggcatggaa tcaaacgctg atcaccatgc caccgtggta aacaaacaaa gcaccaaagc      1080
     ctccctaata cattgtacac tcaaaacgta cactgccata cgtcggcgaa aaatcaaaac      1140
     ataagcaaaa atcatttcaa accaagcgag gctcattctg cgtaccacaa cgacaacgac      1200
     actgcatgtg tagtggcgca cccatgtctg ggtagccgag gtaaggggaa aacgcttgag      1260
     tatcgtcaag tgttcttgcc tttcactctt ctacaatggg ttgctacgct catgtattgc      1320
     acattcaaaa taaccaaaac aaatgtacta aagaagtcga catatacaga tatatttggt      1380
     tccctttcat tgtgtaattt ggtatatcaa acaaatacta ataccaatca cattgcaaaa      1440
     tataaaaggg aaaatataaa gccaaagaca gacacctata cacatcatat ctacacaccc      1500
     atacactcta gtaaacaaga aatttgttca ttatttttca atcatacata atatactaag      1560
     taacctcaaa tttaatgtca aaaaagttcg tttacaacct taggaaaact acacgttcag      1620
     ttgttggagt tccaccaaac ctacttctca gcccacagtc aatttaaact cattagatgt      1680
     ttgatcttcc tccccgaaat tactgatagt acggagatcg aaaaaattat aaccgactat      1740
     cactataata gtaaccatcg agggatcgat gaaacatatt tacacataaa acgacaacag      1800
     ttcttcccac atatgaagga gagaataact cagttaattc gaaaatgtga aacatgttta      1860
     aaattaaaat acgacagaca acctcaaaag atcacttacc aaatatccga actaccttca      1920
     aaaccgttgg acatcttaca tatagacatt tatactatta acaaaaatta taaccttact      1980
     attatcgata aattttctaa atttgcggct gcctacccta taactaatag gaattgtatt      2040
     aacgtagtta aagccttaaa acatttcatt tcccaatttg gtattcccaa aaagctgatc      2100
     tatgatcagg gagcagaatt cgctagcgat atgttcaata agttctgcac tcaatttaac      2160
     attgacctgc acgttacgtc cttcaacaat cctctagtaa ctctcccgtt gaacggcttc      2220
     actcgacact aactgagatt tacagaataa tacttgacgt caggaaacaa cagaaactca      2280
     gtagcgaaca tgacgagata atgtccgaaa ccctaatcac atataataac gctattcatt      2340
     ctgcaactaa acataccccc tttgaactat ttaacggacg tactcatata tcaaccaaac      2400
     aatccagttc aataacgaac acgactactt aacgaaatta aatgaatttc cgccgagaag      2460
     ttgtaccccc tcatcacgga caaactttca aatgacgtag ttaggagaac cctaaaatta      2520
     aatgaaaccc gaacagaccc cgtagaccta caaccagaca ctttagtcct taggaaggaa      2580
     aacagacgta ataagattac acccaggttt tcgattcaca aagtcaaaca cgacaaaggt      2640
     catacattga taactgctag gaatcaaaaa ctacacaaat caaaaattcg aaaaacagtt      2700
     ttgaaaaaag acaaaagcaa caacgtaccc aacactgata ataaatgacc ccactacctc      2760
     ttaacttacc atttcaggtt cacccttgtg ccaactcagg ctatccatgt ccattattta      2820
     aatgataacg cccctatagc caagatagaa ctagggaaag ccttactaat tgagaggtac      2880
     aaaataatta gtcatgtaat caacctacaa gactacagca gatgtatgga acaattccat      2940
     ctgaccatta ataaatttaa ccccgattcc acgttgacgg actccgtcac aattttaaaa      3000
     accaaattaa cccaagccca agtaaagctc aaagccctta cgccttcata tagaaacaaa      3060
     cggggtttga ttaacggatt ggggagtcta gtaaaggcgg ttaccggcaa catggatgcc      3120
     aacgacaata aagaaataca tgaagaactt gacaatataa agaaaaattc cgaagtcagt      3180
     aacgacaatc tccaaaaaca agtaatgttt aacaacgaaa tacttatccg gttcgaaaat      3240
     atcacggacc atataaataa tgaacaaatt ttgataagta aattctttga tacctcacaa      3300
     aacaaaatat acaaacactt aaacttacaa gatacccttc tggaagaaat acaatattta      3360
     aataggatta attataacat agaattattc attaaccacc taaacgacat aacagaaagt      3420
     atgctattgg cgaaaataaa tataattccc aagttcatcc taaatgaaca agaaatggat      3480
     aaaataaaaa caatactgga aaaacaaaat atcacagtca aaaatgaaca aagtatatac      3540
     aatttcctac aaatgaatac actaaattac gaacaaaaga ttatttttaa tatcaaagtg      3600
     ccaattttta aacaaccttt tcataccctc gccagactag ttccattacc aataaataac      3660
     acatattttg taataacccc aaattaccta gcttataata ttaataataa gaaatttcat      3720
     atgacccgta aatgccccaa actggataat acattcttgt gcgacgagaa cttctacgtt      3780
     gatacaccac agaacaacac atgcctggaa caccttttga acggagaaaa cagttcctgc      3840
     gatgtacggg aaaccggccc catcaccgac gtgttcgagg cagagagagg ttacatcttc      3900
     gcattcaacg tgaacaaact gaaggtatcc ctaacaaacg gctccgagct ctcaataatg      3960
     gggtcagcca tcatcagata cattaacgaa acaatacaga ttaacggtat cgattacgac      4020
     ggcacggttg acacgttccc tgaacagacg gattttgatc ttccccccat gcgaaaagta      4080
     actaggaata ccactattac ggtactaagc ctagaaaaac tgcacctcga agccacccaa      4140
     acaatggata aaatcctggc cgtccatcac aatactatac agcacacctg gacactctac      4200
     gctctgctcg gattggtaac gttcctagca gtcatcttat ggctgcaccg acgaacgaaa      4260
     cacatcgtcc acatccacga ggatcatcac gtaccaatct acgcgtcatc cataccttcg      4320
     ctatggccgt cacttcgaac tgggggggga gg                                    4352
//
ID   DMCR1A      repbase; DNA   ; DRO   ; 3102 BP.
XX
AC   AC006215;
XX
DT   01-JUL-1999 (Rel. 3.4, Created)
DT   01-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   DMCR1A is a LINE-like retrotransposon.
XX
KW   Non-LTR retrotransposon; FW_DM; ORF2; CR1-like superfamily; G;
KW   DOC; DMCR1A.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3102
RA   Kapitonov V.V., Jurka J.;
RT   "DMCR1A.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
DR   GenBank; AC006215; Positions   18012   21113.
XX
CC   DMCR1 belongs to the CR1-like group of non-LTR retrotransposons.
CC   It has poly(A) tail and it generates 10-15 bp-long direct repeats
CC   upon its integration into the genome.
CC   DMCR1 forms separate family of recently or curently active
CC   LINE-like elements in Drosophila melanogaster
CC   since there are several DMCR1 copies having lesser than 5%
CC   divergence to each other. DMCR1A is most close to G_DM element
CC   (25% divergence both on nucleotide and protein levels).
XX
SQ   Sequence 3102 BP; 877 A; 949 C; 642 G; 634 T; 0 other;
     cgaagaccgg ccaccccttt cagcaaaccc tgcaccatca agctcccaag tatctccaat        60
     atgagctaca gagatgcgct catgtctacc caagtgcctc agcaaaccaa tcccaaccaa       120
     acccgtcaaa ccccacctga atctccgcaa cccagtaaca tggaacaaat gtttgctcgc       180
     ttcgaaggaa tggtcgaaag gatgatggag aagatgttct cgcaaatgac gcagcttgtt       240
     gcttccatcc tcaacgcaaa agtatgcaaa gcctaaaaat agttatttgg aatgctaatg       300
     gcctgcagag gagcagagcc gaggtggaac acctcctaaa aacagatgcc atcgatgtac       360
     tactggtatc agaaacccac ttttgtccca gatcccattt tagcattagc ggctacgatg       420
     tcatccctgc caaccatcca tctggcagag cgcgcggagg agcagccatg ctcatcagga       480
     gtggcatcca gtacacggag ctacctgcgt ttcaggagga atgggcccag tgtgccctgg       540
     ccagaatctc cagcctacat ggagacatca ccgttggagc ggtctacttc ccacctagac       600
     actcgatcac cgagactcac ctacaagatt tttttgagtc ctttggacct cgctttatag       660
     cagctggtga cttcaacgcc aaacactcct ggtgggggtc ccgctccatc aaccccaaag       720
     gcagaacgct ccacagattc ctgcagagca gaagactgga ttgccactcc tctggtgagc       780
     ctacccactg gccttcaaac ccttccttgc tgcccgacct cctggatttt gctatctcca       840
     aaggcatagg gcaagacaga ctaacttgct ccaactataa caagctgata tccgaccaca       900
     gcgctataaa aatgcttctc aacatccccg tcctcaaaaa agagttgccc agaagactca       960
     ccgggaagca cactgatgcc tccaagttca cactctggat gctgtcctcc ctgcacccgg      1020
     atcctccact ctccactcca agcaacatcg atgcggcaat caaaactctc acggatgaga      1080
     tgtacaatgc tgccgagttt gccaatcctc ctccttcaac gtccccaaga actcccggta      1140
     gagaccttca cctctggtct ccagaaattg cggccttcgt agcggaaaaa aggcgcctca      1200
     ggagaatctg gttcttctcg cgcaacccaa gggacaaggc agcactcaac agagccatca      1260
     aggaactcaa ggacaagctg tgtaccctac ggcaagactc cttcgacaga ttccttgagg      1320
     agctggaacc tggtgacccg caacataatc tgtggcaagt cacgcgtcat atcaggaggc      1380
     ctgcaaagaa ggcgtcgccg gtgcgcaaag cggacggctc ttggtgccgc tctgaagccg      1440
     aaagagctga agcgtttgca gatctccaga atgcattcac accatttgac agatgcactg      1500
     gcgaagagcg tgctgcaacc accaggttcc tagagagtcc atgtcctcct agcctgccca      1560
     tagagcccgt caccccagaa gaggttgcgc aagagatcgc ctccctaaag gctagcaaat      1620
     ccccaggact ggatcgcatc gacgccacat cccttaaaat gctgccacct ccctgttccc      1680
     agttgttggc caacatatac aacagatgct tctcactagg gtacttcccg agatcatgga      1740
     aacgtgcaga agtcattctc atcctcaaac ctggaaaacc tgaagccaat cttgcctcat      1800
     atagaccgat tagtctgctg acaatcctct ccaaaatact cgaaagagta tttctgcgca      1860
     gagtcatgcc agtactggac gaggctggac tgatccctga tcaccagttt ggcttcaggc      1920
     gatcccacgg aacacccgag caatgccacc ggctcgtagc acgcatccta gatgcattcg      1980
     agaacaaacg atactgttcg gccgtattcc tggatgtcaa gcaggcgttc gacagagtgt      2040
     ggcatcctgg actcctctac aaactcaagt cccaccttcc cagttcccac tatgccctac      2100
     tcaaatcgta tactgaagga agagagttcc aagtgcgatg cggttcctca acaagcacga      2160
     caaggcctat acgagccgga gtacctcaag gcagcgtcct tggtcccatc ctctacaccc      2220
     tgtttacagc agacctccct atcataccct cccgttacct cacagcagcc acctatgcag      2280
     atgacacggc gttccttgcc accgcaacaa accctcaatt agcatcagcc atcatccaga      2340
     ggcaactgga tgcactggat ccatggctga aacgctggaa catcatgatc aacgctgata      2400
     aatcctccca caccaccttc tctctgcgca gaggagaatg ccccccggtc tcactcgacg      2460
     gcgacacaat ccctacctcc agcaccccca aatatttagg gctgacccta gacagaaggc      2520
     tgacttgggg cccccacatc aacaataagc gtatccaggc caacatacgc ctaaagcaac      2580
     tccactggct catcggtaaa aagtccaagc tgcgagagaa actaaagatt ctcgtctaca      2640
     agactattct caagccaatc tggacgtacg gaattcagct gtggggcact gcttgcacat      2700
     cacatagaag gaagatccag cgatttcaaa acagatgttt gagaatagtc tccaacgccc      2760
     atccctacca cgaaaattcc gccatccacg aggagctcgg gattccatgg gtagacgacg      2820
     aaatctacag acacagcgtg agatatgcta gcagactgga gaaccaccac aaccacctgg      2880
     ccgtcaacct tctagaccac agccaatccc taagacgcct gcagagaacg cacccgcttg      2940
     accttactca acatacttaa tcatacttaa cccctaccca agtacactcg atgtactccc      3000
     cttaagttaa tgtttccctc caaaaaattt aattattgtc cactaggaca gattttaaat      3060
     aataaataaa aggctacaaa aaaaaaaaaa aaaaaaaaaa aa                         3102
//
ID   TRANSIB4    repbase; DNA   ; DRO   ; 2656 BP.
XX
AC   .
XX
DT   24-APR-2001 (Rel. 6.03, Created)
DT   27-APR-2001 (Rel. 6.03, Last updated, Version 2)
XX
DE   TRANSIB4 is a DNA transposon, a consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; DDE-class;
KW   TRANSIB family; TRANSIB4; TRANSIB4p transposase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2656
RA   Kapitonov V.V., Jurka J.;
RL   Direct Submission to Repbase Update (APR-2001).
XX
CC   TRANSIB4 belongs to the TRANSIB family of DNA transposons.
CC   It has generated 5-bp duplications of the CantG target
CC   sites upon its integration into the genome (it has happened
CC   a few million years ago).
CC   TRANSIB4 has 40-bp terminal inverted repeats.
CC   There are ~10 copies of TRANSIB4 which are ~93% identical to the
CC   consensus sequence.
CC   TRANSIB4 encodes the TRANSIB4p transposase (positions 545-2152).
CC   The transposase is not perfectly recovered since it contains a
CC   few false stop-codons and a deletion.
CC   TRANSIB4p is 37-44% identical with TRANSIB1p-TRANSIB3p.
CC   There is 60-62% nucleotide identity between TRANSIB4 and
CC   TRANSIB1-TRANSIB3.
XX
SQ   Sequence 2656 BP; 932 A; 455 C; 451 G; 818 T; 0 other;
     cactatgggt aaaaagccgg aaattttggt attaatgtaa ttttttttgt gattgatatt        60
     ttaatgctgc tttcattttt tgattcctaa gtaacaagat agcataaaaa taattttaaa       120
     acatttttac gagttatcgt ttatttttgg cgcgctttca aagtcagctg attcagaggt       180
     gctttgaatt gtgaaaattg gcggaaaaag ttgaacaaat tgcagcgcaa acattgtctt       240
     catagcaaac tttgagttta tttttaatta tggaaaaaac aagtcagagt atgtaaatta       300
     ttcgtgaata cacgttttcc gataattgtg tgtggttgtt gttgaattgt ccaatgtatt       360
     gcttgtgagt attttcaatt gtttactaac aaacgttcta gtgttctgtg gaatattact       420
     tttgtatggc acaacgaatc accaaagtta aagttgtatg tttttaacaa atatatgtgg       480
     aatcaaatgg tattaatgtt ttttgcccct ttttgccctt ttttgcgaaa cattttatgt       540
     tgtaggtgtg tataagttta gtcatgcagt tctgctggat gtttggagca acaacaaacg       600
     cgatgcagac gctgttaaca gttatatttt ggaaaatata gaagagaact ttgagactaa       660
     agagcaaaag attacaattt caaagaaagt gaaccaattt attacttatg taaacaagca       720
     cttaaggaaa tgcaatcgaa tgttggaccg attcaaacga aatcatttat tgtggcttgc       780
     gtctaaaatt gttgtcgtta ttgataagcc agaaatgaca ctatgcaaac ctagccgaaa       840
     acagttaaca tatgaagatg cagggcctca acctaaaaaa aaaattagca aattagctgg       900
     ctgcagaaca agggcattca acaccacttc tcgtacatgc tgcttcaatt tccgcaaaaa       960
     aaacgaagca ggcagaaacg gcctttgtat taaaaaaaaa aggataagca gtgaaaacat      1020
     acatgatata aaaaagaaaa ttgagacaaa tcatcctatt aaaataagtg ctgataatgc      1080
     tttagctctc ttaattgaaa atggatttac aaagcagcaa tataataata taaaagcgct      1140
     caataagcag caaggatgcg atattttccc tccttattca aaagtagcag aagcaaaatt      1200
     gaaatgcagg ccttccgaac ataaaatttc tgaaaaaagg ccaggagtat cgtagcaaga      1260
     tttgctagat catacagctg gccacatact tttaatacaa gagtaagttt tttgtgttca      1320
     tccagaccca acgaattgta cattaattgt gagctatggc ttcgatggat ctacggacca      1380
     aagcacgtac aaacaacgct ttctatcaaa cgaatgtatc gccctagatc aattcctttt      1440
     cgtcactcca attataccgc tgaaactaat agatgaaatc aacaatcgag ttatttggat      1500
     acattcatct ccacaatcgg tgagatttgg tcggcctttg aaaattgagt ttataaagga      1560
     aagtgctgcc cttatattga aggaaaaaca aattttggat gcggctataa aaaaccttag      1620
     accatattcc tacacttcca aaaaccaaat aatagcatat actgcagacc agcgttcgtt      1680
     ctcgaacagc aagatatttt cgtccgtttt gaatttggac tacaaaatca tttacaattt      1740
     ttatataatt ttgatttcaa tttcttgtga gcacatgatt gatgcgaaaa atttaaatct      1800
     ctataccatt ctacttttaa tttatacgtt aaatacgaac cttatatgga gtacatacat      1860
     ggtaacatag agtagtcacc aaccaatatt ggtacatgga tataaaattg taagccaatt      1920
     tattgttcct gttagtgtcc ttggagaaaa cgcgtcagaa gcgcgcaaca aactttacaa      1980
     gagcgataga aaatctcacg ccaggaaatg tagccgacta gcaaacatta cagatgtttt      2040
     taacagagca gtggattcat ctgatccatt gctttcaagt ctttgtctaa gagatcgaag      2100
     taagtttgga aaaaagaaac tcctcccaaa agaagtaatc gatattcttc aaaatccgga      2160
     tgcagaactt tataaatcaa gttatcattc taataataaa gaaaaagaag tggaagtgga      2220
     agacgaattc aattgccttt ataataagag gaggcagttg aagaatgaca atcaacttaa      2280
     taaaatataa aaaaatttat tgacttttat ctcataataa tggtttttgc atcttgtgtc      2340
     ctcacttcgc tcccacgcca atcccccagg gaagacacct ccggatccac cggttgaacc      2400
     acagacatat taacacccac acctccttcg ccacccatcc atctcccttt aaaaccgctt      2460
     tcatttgtat ataaatacat ttttcacttt attttcaagg attgtttttg tgggcggaga      2520
     tgaaggcgtg gtcagatcaa aaaataaaca aaatccaaaa ttctatttaa atcctaatta      2580
     taaatataaa aaaaatcaag tcgctatctt taaaattgta attaatacca aaatttccgg      2640
     ctttttaccc atagtg                                                      2656
//
ID   DM412       repbase; DNA   ; DRO   ; 6897 BP.
XX
AC   X03733; X04132;
XX
DT   22-DEC-1995 (Rel. 2, Created)
DT   22-DEC-1995 (Rel. 2, Last updated, Version 1)
XX
DE   Drosophila retrotransposon 412 genome.
XX
KW   LTR; retrotransposon; reverse transcriptase; DM412.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6897
RA   Yuki S., Inouye S., Ishimaru S., Saigo K.;
RT   "Nucleotide sequence characterization of a Drosophila
RT   retrotransposon, 412.";
RL   Eur. J. Biochem 158(2), 403-410 (1986).
XX
RN   [2]
RP   2876-5575
RA   Yuki S., Ishimaru S., Inouye S., Saigo K.;
RT   "Identification of genes for reverse transcriptase-like enzymes
RT   in two Drosophila retrotransposons, 412 and gypsy; a rapid
RT   detection method of reverse transcriptase genes using YXDD box
RT   probes.";
RL   Nucleic Acids Res 14(7), 3017-3030 (1986).
XX
DR   GenBank; X04132; Positions       1    6897.
XX
CC   repeat_region 1..310
CC   /note="long terminal repeat (LTR)"
CC   promoter 148..154
CC   /note="pot. TATA-box"
CC   misc_feature 168..172
CC   /note="pot. RNA1 start site"
CC   misc_feature 184..188
CC   /note="pot. RNA2 start site"
CC   misc_feature 238..243
CC   /note="pot. polyA signal"
CC   misc_feature 311..325
CC   /note="primer binding site (tRNA binding site)"
CC   CDS 442..825
CC   /note="ORF 1 (RNA1) (aa 1-128)"
CC   CDS 1130..1444
CC   /note="ORF 2 (RNA2) (aa 1-104)"
CC   CDS 1599..2963
CC   /note="ORF 3 (RNA1) (aa 1-455)"
CC   CDS 2876..6586
CC   /note="ORF 4 (RNA2) (aa 1-1237)"
CC   misc_feature 6788..6897
CC   /note="long terminal repeat (LTR)".
XX
SQ   Sequence 6897 BP; 2760 A; 1212 C; 1180 G; 1743 T; 2 other;
     cattcacacg ccgaccaaat acatattaca tacgtacata catatctcgc tctcccgata        60
     agcctagata tataagatat acataagaac gccgctccgc tgctggcgta cccggcacgc       120
     agctacgcgg attagcctaa gtccaaatat ataaaaaact gtaaaatcag agagactctg       180
     tagacgttga gctgacagaa ccatttctgc ctactctaaa atcaaaagaa gaaattgaat       240
     aaatatatgt cagcccgacg gtcttcaact taaaacggac ttgtgttctt aattggagtt       300
     catcattaca tggcgaccgt gacagnntcc aacgctggac gaattgacca aagctggtga       360
     aaacaaagga acaaaggaac actggactgg aagaagactg gactaattaa atggaactgc       420
     aaaaaccaag gaaaaatctg agtgagtaga gttctattga gtatgggcaa acaccgtggc       480
     ggtttgaaaa ctaagctgaa taaacgtata gcccacgtaa ggtggctaat atacggtcag       540
     caaacgccac cggtttggtc gaaagctcta aagctacatg cagagctaga ccacttgttg       600
     caatatcagc aagaattaaa gacccataag ctcgagaaaa ctcactcaga taatattaaa       660
     aatataccca caattaatga agttccaaaa taccaggcat gtccagcacc agcaccagca       720
     ttaacaaaac caaagaagtc ctgcccccct ggctgcgaag gaatctggag tccccactgc       780
     ctggggactt gtgagcgacc atcgacgtct tcagcggcga agaaatagac agcagcgagg       840
     gagtgtcagc gtgccacccc ggcgacgccc agctgacacc tgatagagca tcatcaacag       900
     cagaatataa taataaatat atataaatat aaagtaaata taaaatatat atagataaga       960
     aaaattgtaa gaaatattgt aaaacggagc atatactatt atgccctgtt aacccaatat      1020
     ggcccgtgaa gccatagcta gaatcaggca ggcaacaatg taaaatacaa tttttttttt      1080
     actcttgcga acattgaaag attttataaa tagataattc caaacataaa tgtctataga      1140
     gacaaatgaa ataagtaaaa ctgaaaataa aagtatatac aaaggaaatt ttctattcta      1200
     ttctccaaaa tataaaatta gtatacccaa aatgggtcta atagacacta aaactgtgga      1260
     ctctacagcc aatgtaataa ataaagtaga agtccaaaat gcagacttgt tctggataac      1320
     cataatacta attgtaattg cattaattat ggtatccaat gcattaataa aaatatacaa      1380
     actgcataac aagtgtctta agaaacgata ccgtagcact gctaacggta tagataatat      1440
     ttaaggaaga tctttaataa agtcaattat gaatgaaaat atgagaaaaa ttatatgaaa      1500
     aaaaaaaata ataaataaaa aaaaaatata aaacgtaata ttgaatttat ctacattaaa      1560
     aaaaaaatat atacaaatga ataaatttga agttatgagt ataccacagc atggactggg      1620
     aaaagcttgt tgatcagata aaagatcaaa atgaaaattt cagaaaatcc tataagtgct      1680
     taacgcaaaa cagatcaaca caagctgtaa caatcaatag gaatgcccaa gtcttggtaa      1740
     atagttataa tgaaatcaga gagttgatcc aacaaaatag aaagaatttg gaacgcaaac      1800
     agtgtgctaa ggctttgaac ctactggtga cattaagaga aaaattaata tttataaaaa      1860
     ataaattcag tctccagata gaaattccaa ccatagtaaa caccccacta agaataaatt      1920
     tgaatgaaga cagcactaac tctgacgagg aagataggac tatagtcaag gaagacatta      1980
     aagaggaaga tcttcacgat ctaactatac cagcaaaatt aatgctgaag aacgacgata      2040
     aaacaaataa cgcagccgac tccgaaaata acttaaccat ggcagaagaa gcagctgcca      2100
     ttaggtctta cattagggaa gtcgcctgca cagtgccaga atttgatggg caaaagatcc      2160
     atttacaaag attcattaag gcaatcaaat tggtagacct agctaaggga ccatttgaag      2220
     acattgcagt tgaggtcatt aagtcaaaaa tagttggcac aattttgaac tcagttgaca      2280
     atgaaacgac aattccagca attataaaca aattgcagaa agtagttgtc ggtgagacat      2340
     ccagtaatgt caaagcaaag ctagcaacag ttcagcagag aggtaaaact gcaacgcaat      2400
     ttaccgctga agttgatagc ctgagaaaac ttttagaagc ttcctatatc gatgagggta      2460
     tacctctaga acatgccact ggtctaagca ccaaagaggc aattgaaacc atgatacatc      2520
     gtgctgagca cgaaagtatc aaaacagtac tggaagcagg gacttgcacc actatggatg      2580
     cagcgataag cgcatacata agaacgagta caagagttac cggtgacatc aataaagtga      2640
     tgtactttag aggtaacaga cccaatagag gatacggaaa tgccaataga ggtagtaacc      2700
     gccgtagagg ctttaataac aatagtatta gaggcaacta ccataacggt taccaaaata      2760
     acggttacca aaataacggt taccagaata acggttatca aaaccgctat aatggaaata      2820
     ataaccgtta taatggctat aacagaggcc gttataatgg aaacagaggc cgtaacaaca      2880
     gtcagaacaa ctacaacaga aacaatgcca atgtacgagt aatccaagaa cagggcaact      2940
     cgcaacagcc tttaggtact cagtagaaga agatcgtaga gtatacacca tcaattataa      3000
     tctcaacata ttttctacat tcattcatgc caaaacaggc gtaaaactag tttttctact      3060
     tgatacaggt gcagatatct ctattctcaa agagaactct gacaaatttt ctaatattca      3120
     aataaccaat aaaataaaca ttcaaggcat aggccaacag aaaattcagt ctcgaggaca      3180
     gacttttatt gagatacaga caggtaaata cgttatccca cacgattttc atttagtaga      3240
     taaaaacttt ccaataccgt gtgatggaat aatcggaata gatttcataa aaaaatataa      3300
     ttgccaaatc gatttaaacc aagaagaaga ttggtttata attagaccaa acaatttgaa      3360
     atttccaata tatattccca tagcatacag ctctggtatt aacacaacgt tattaccagc      3420
     aagatcccaa gttgtccgaa gattaatagt atcatcaaaa gatgataaca ttttaattcc      3480
     aaaccaggaa attcaaactg gtatttatgt tgcaaataca atcgcaacat caagtaatac      3540
     atttgtccga attttaaata caaccgattc cgaccaatta gtcaatatgg acactctaaa      3600
     atatgagcca ctttcgaact acaatgtagt tcaggcaaat agtgaacaca gaaataaaac      3660
     tgtcttatct caattaaaga aaaatttccc cgaattgttt aaatcacaat tagaaaatat      3720
     atgcagcgaa tatatagata tatttgcatt agaatcagaa cctataacag ttaataattt      3780
     gtataaacaa cagttgagat taaaagatga tgagccagta tacacgaaaa attatagaag      3840
     tcctcatagt caagtggaag aaatacaagc ccaagttcag aaattaataa aagataaaat      3900
     agttgaacca tcagtttcac agtacaatag ccctttgcta ttagtaccca aaaagtcaag      3960
     cccgaattct gataaaaaga aatggagatt agtaatagac tatcgccaaa ttaataagaa      4020
     acttttagct gacaaatttc cactaccgag aatagatgat attttggacc aacttggtcg      4080
     agcaaaatat ttctcctgcc ttgatttaat gtcaggtttt catcaaatcg aactggatga      4140
     aggctcgaga gatataacat ctttctcaac cagcaatggc tcatatcgtt tcacgcgatt      4200
     gccatttggc ttaaaaatag cgcctaattc attccaaaga atgatgacta tagcattctc      4260
     cggaatagaa ccgtctcaag cattccttta tatggatgac ttaatagtca taggttgttc      4320
     cgaaaaacat atgcttaaaa acctcactga agtttttggt aaatgcaggg aatacaacct      4380
     aaagttacat cctgaaaaat gttcattttt catgcatgaa gtcacatttt tgggacacaa      4440
     atgcacagac aaaggaattt tgccggatga caaaaaatat gatgtcattc agaactaccc      4500
     agttccacat gatgcggaca gcgctagacg ttttgtagca ttttgcaatt actacagacg      4560
     ttttatcaaa aatttcgccg actattcgcg gcacataaca agattatgta aaaagaatgt      4620
     tccattcgag tggacagatg aatgtcaaaa agcattcata catttaaaat ctcagctaat      4680
     taacccaaca ctcttgcagt acccagactt cagcaaagaa ttttgcataa caacagatgc      4740
     aagcaagcaa gcgtgtggcg cagttttaac tcaaaaccat aatggccacc aactcccagt      4800
     tgcttatgca tccagagctt ttacgaaagg tgaaagcaat aagagtacaa cagaacaaga      4860
     gttagcagca attcattggg caataataca tttcagacca tacatttacg gaaaacattt      4920
     cactgtgaaa acagaccata gaccattgac atatttattc tcgatggtga accccagctc      4980
     taaattaact agaataaggc ttgaactaga ggaatataat tttacagtag agtatctaaa      5040
     gggcaaggac aatcatgtag cagatgcgtt atcaagaata accatcaaag agctaaaaga      5100
     tataactgga aatatattaa aagtcactac aagatttcaa agtagacaaa aatcctgcgc      5160
     aggaaaagaa caattggatt tgcaaaagca aaccaaagaa atagcttcag agcccaacgt      5220
     atacgaagtc ataacaaatg acgaggtacg aaaagtagtg acattgcaat tgaatgactc      5280
     gatatgttta tttaaacatg gaaagaaaat tattgcaaga tatgatgttg gtgatcttta      5340
     tactaatgga attcttgatt tagatcaatt tctccaaagg cttgaattgc aggccggtat      5400
     atatgatatc agccaaatca aaatggcacc gtggaaaaaa atctttgaac acgtttcaat      5460
     agataaattt aaaaatatgg gcaataaaat attaaagaat ttaaaagtag cgctacttaa      5520
     cccggtgacc caaataaata atgaaaaaga aaaagaagct atattgtcta cattacatga      5580
     tgatccaata caaggagggc atacaggcat tacaaaaacc ttggccaagg tcaaaagaca      5640
     ttattactgg aaaaatatga gtaaatacat aaaagagtac gtaagaaaat gtcaaaaatg      5700
     ccaaaaagca aaaacaacaa agcacacaaa gactccaatg acgataactg aaacaccaga      5760
     acatgctttc gatagagttg ttgtggacac aattggtcca ctacccaagt cagaaaatgg      5820
     taacgagtac gcagtcactc tcatatgtga tttaaccaag tacttagttg ccataccaat      5880
     agcaaataaa agcgcaaaaa cagtcgcaaa agctatattt gaatctttta ttctaaagta      5940
     cggtccaatg aagacgttca taacggacat gggaacagag tataagaatt caataattac      6000
     tgacctgtgt aaatatttga aaataaaaaa tataacatca acagctcatc accaccagac      6060
     agttggagta gtagaaagaa gtcatagaac tttaaacgag tatatacgat cctacatatc      6120
     gacggacaaa accgattggg acgtatggct tcaatatttc gtatactgct tcaacacgac      6180
     ccaatctatg gtacataatt attgtccata tgaattagtt ttcggtagaa caagtaattt      6240
     accaaaacat tttaataaac tacatagcat agaaccaata tataacatag atgattacgc      6300
     taaggagagt aaatataggt tagaggtagc atatgctcga gcaagaaaac ttcttgaagc      6360
     acacaaagaa aaaaataaag aaaattatga cttaaaagta aaagacatag aattagaagt      6420
     aggagataaa gttttactaa gaaatgaggt aggtcataaa ttagacttta aatatacggg      6480
     gccctataag atagaaagca taggagataa taacaatatt acgctactta ctaataaaaa      6540
     caaaaaacaa atagttcata aagatagatt aaagaaattt cattcatgat tgaatttaaa      6600
     cttatatttt ccttaatcat ttatacaaat tttccataca ctacgtatat ttttatcttt      6660
     gcattataaa atcaactatt gttgttcaaa caaaaacaca aacaaaataa aaataaaaat      6720
     aaaataattt gcatttaata atcaaaataa cttcactagg ttacgttatt tttcaaaagg      6780
     agggagatgt agtatgtgcc tatgcaatat taagaacaat taaataaaat agcatattaa      6840
     cttatggcag cactttgttg ctatgtttat gtttatgttt atgcacgcag ttaggcc         6897
//
ID   INVADER1_I  repbase; DNA   ; DRO   ; 3186 BP.
XX
AC   .
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   INVADER1_I is an internal portion of INVADER1 retrovirus-like
DE   element - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   endogenous retrovirus; GYPSY superfamily; INVADER group;
KW   INVADER1_I; INVADER1_LTR; gag; integrase; protease;
KW   reverse transcriptase.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3186
RA   Kapitonov V.V., Jurka J.;
RT   "INVADER1_I.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
CC   [1] (Consensus)
XX
CC   LTR of INVADER1 retrotransposon is listed in Repbase Update as
CC   INVADER1_LTR. INVADER1 can be an active retroelement since some
CC   of
CC   its proviral copies are almost identical and flanked by
CC   identical LTRs.
CC   INVADER1 generates 4 bp target site duplications upon its
CC   integration
CC   into the drosophila genome.
CC   INVADER1_I encodes gag, protease (peptidase A2), integrase and
CC   RT:
CC   1 32 897 1495 1896 1966 2499 3186
CC   111111==(=========)=(====)===(====)=(=====)=========111111
CC   LTR | | | \ LTR
CC   | | | \
CC   | | | \
CC   | | | \
CC   gag protease Integrase RT
CC   (peptidase A2,
CC   or retropepsin)
CC   INVADER1 belongs to the INVADER group of GYPSY-like transposons
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER2, INVADER3 and
CC   so on.
XX
SQ   Sequence 3186 BP; 959 A; 612 C; 728 G; 887 T; 0 other;
     tcagaagtgg gatcgcctat acctactttg aacaatgaaa atagtttgct gacaattttg        60
     gagtcgcaaa atcgtcattt ttccgaactt ttgaaacaag tgcaacactc acaaagagag       120
     tcaagagaat cgtttgctgt ggtattgccc aggtttaatc ctgaacgtgc gggatcagat       180
     gcgcaatcct ggtgttcaac ggtggactac atcttgtccg aaaaccaact ggaaggcagc       240
     gctcttgtga tgacccttag caaatcactg gaaggaagcg cgtctcattg gctttcacag       300
     acttgctttc ctggtatatc atggccacag ttccgagaat tgtttttgct acattttgcg       360
     ggaacagaaa cattagcggc agccgttatg aatctgctaa atggacgccc tgcggaaggc       420
     gagtgcctgt cgttatacgg aagccgaatg gttacttcgc ttatggccaa atggaagacg       480
     ctgagcgtgg agcaaatcgc agtctccatt acactggcgc atgcagctgg aattgacagg       540
     cgtttgcggc gtttagtttt cacttccgac atcaacactc ggaacgagct gaaccaagaa       600
     ctaaaggcct attcattcga cgctagaccg agccaccttc caaacgatgg tacatcagag       660
     ccgccaggaa aacgagctaa gccctacttc aagtgtcaca actgcggaaa gcctggtcat       720
     aaaaaggcgg attgtcgatc aaaaacagtg gcagtgcacg ttcagcaacc cgacaggcaa       780
     ccatcaggga aagaccggtc tactttgact tgtttcaact gcggaaaagc tggacacatc       840
     tccaccgtat gtcctgatcg tcaggagcgt tcatcgtcta gcaaaaataa cattgtttaa       900
     gatgtcaaca tctgtaccgt ttttgagccc gtacggacgt tttcgcaatc tggtgagtcg       960
     ttccaatttt gttttgattc tggagccgag tgttcactca tcaaggaggc tacttcgcag      1020
     agactatctg gatccagaat gggcaacgta gttattttaa ggggtcttgg tagcaatact      1080
     atttgtagca ctttgcagat attggctaat gttttgataa gtgaacgctc atatgaaata      1140
     ttgtttcatg tagtgttaga caattatatt aagtatgacg ctctgattgg tcgagatatt      1200
     ttgagccagg gagtcggtgt gacaataaca tcaaaatctc ttactatgtt taacgaaaaa      1260
     tctatattgt ctgttgaagt ttccgaaaag aatcccgatt tggctcatgt tgactttctg      1320
     tctcggaatc cggttccaaa aattgtcaag aattccatag gcgtagtcga aaggcatatc      1380
     aatctgacag aaatatccga caactggtta ttggctgaac agcaaagaga cgaagaaact      1440
     tcttccatta tctctaaatt gcgtaataat gaattgtccg aggatttggc caagacttat      1500
     gaactacggt ctggaactat gtaccgaaaa attcaaagaa atggaaagac tcgatgtctg      1560
     cccataatcc caaagcagtt taggtggtcc gctgtcaaca acgtacacga gtcagttatg      1620
     catctcgggt gggagaaaac tcttgagaaa atgtacgagt tctattggtt cgataaaatg      1680
     tctaagtatg ttcgccaatt tgtggacaac tgtatcactt gtagattatc aaaacctccg      1740
     tctggcaaaa tacaatccga actccatccc attcctaaaa ttgacatccc gtggcatacg      1800
     gttcatgtgg atattacagg taaacttagc ggaaaaagcg accagaagga gtatataatt      1860
     gtgatgatag acgcatttac caaatttgtc tatctctctc atactacgaa gctagacacc      1920
     gatagttgca ttaaggcagt gaggtctgtt atatcattat tcggtgtccc ctcccgactt      1980
     attgctgatc aaggtcgtag ttttgctagt tcagctttcc gtgatttctg ctcagcacag      2040
     aaaatggatt tacatttaat tgccgcaggt gctagtcgtg acaatggcca agtggagcga      2100
     gtcatgagta ctctaaagtc catgctgact gcggttgaaa ctggcccagg atcttggcag      2160
     gattctttat atgagattca gctggccctt aatagcacgc ccaatagagt tactaaagtc      2220
     agtccattag agatacttat tggcagagaa gcaaggccat ttgggcttac acctgttgta      2280
     aaagaacaaa atattgtcga tgttggctta gttagagaaa tagcaaaacg caacatggaa      2340
     aagaatgcca aaattgataa agctagattc gataaaaaca aagccactat tgtaagacac      2400
     aagctaggag accatgtttt acttaaaaat gaagagcgtc accagaccaa attagatcct      2460
     aagtttaaag gtccatttgt agtggccgaa gtattaccag gagatcgata taaactcaaa      2520
     gcattaaata ataaccgaac ttataaatat tctcatgaat ctttgcgatg tatgcctgag      2580
     aagaggatta ccacagtatt tgaagatgaa ggcacagaag atgccagtga tcaagccagt      2640
     gagggctgtg atcttgagaa tgactaaaaa tttgtaaacc tccggaccta ttccaaatgc      2700
     gactttctct acctcatggg tgcccgagtt aagtggttcg ccattttgtt gcagttaagc      2760
     ttaaatttgg taacggttgg tggtgtgagt taactggccg gcttatagac tgcgtcatct      2820
     gggtgccacg tatgttggcc ggattgtcga gttgtaagct gtgagctagg ctaacaaaag      2880
     atggactggc cggtttgaaa aactgtgcgc tagtagaaaa atgtattgaa aatcaagaac      2940
     gttaacgatt tatgtttgaa gaagacaaaa ttatgattgt ttgattgaaa gctgatggtg      3000
     gtccggttct catggcttaa atgtaataaa tgaaatgttt taaatatttg tattggtttg      3060
     atttaaagta ataaagaatg aagaataact ttatattttg aaaaaaaaaa taagcctttg      3120
     atagattctg tttaattatt gagagactgt tagcacacga ggacgtgtga taggtcagga      3180
     aggccg                                                                 3186
//
ID   LTRBLD_DM   repbase; DNA   ; DRO   ; 400 BP.
XX
AC   X04671;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Drosophila blood transposon LTR.
XX
KW   Long terminal repeat; retrotransposon; Blood transposon LTR;
KW   DMBLDLTR; LTRBLD_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-400
RA   Bingham M.P., Chapman H.C.;
RT   "Evidence that white-blood is a novel type of
RT   temperature-sensitive mutation resulting from
RT   temperature-dependent effects of a transposon insertion on
RT   formation of white transcripts.";
RL   EMBO J 5, 3343-3351 (1986).
XX
DR   GenBank; X04671; Positions     140     539.
XX
SQ   Sequence 400 BP; 110 A; 88 C; 89 G; 113 T; 0 other;
     tgtaataaac caatatatgc caccaattga gaacacgtgt tttccttgca gttgggtgca        60
     gccgtcaggc caccttttta tttcttctta tctcttcgag tagcagaaac ggttctgccc       120
     cgcttaacct ctacagagtg tctaatctta cctaaatact gcgactgcgc cgccgtcgac       180
     agcggcagaa gagcagcgta tatatatatg tataagagag agagagagag agcttatgcg       240
     catatatggc cagcggccag cgtggggatg ctgacttagc ttaaagcata aatgggtgat       300
     cttatatcac gctcacttga gacatttatt tatgcaatgc aactaagtgt tgctgtgtac       360
     ttataggtac agtgtaccct cgatatatgc acatactaca                             400
//
