ID   MLT1A       repbase; DNA   ; ROD   ; 374 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   24-JUL-2000 (Rel. 7.3, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1A subfamily) - a consensus.
XX
KW   LTR; MaLR family; retrovirus-like MaLR element; MLT1A2; MLT1A.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-374
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
CC   [1] (Consensus)
XX
CC   LTR of MLT1A retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 17%. Intermittant subfamily
CC   between MSTD and MLT1C.
CC   The subfamily MLT1A1 differs from this consensus by two small
CC   inserts
CC   and a few substitutions.
XX
SQ   Sequence 374 BP; 96 A; 87 C; 97 G; 93 T; 1 other;
     tgctatggac tgaatgtttg tgtcccccca aaattcatat gttgaagccc taatccccaa        60
     tgtgatggta ttaggaggtg gggcctttgg gaggtgatta ggattagatg aggtcatgag       120
     ggcggggccc tcataatggg attagtgccc ttataaaaga gaccycagag agctcccttg       180
     ccccttccgc catgtgagga cacagtgaga aggcgccgtc tacgaaccag ggaatgagcc       240
     ctcaccagaa actgaatctg ccggcgcctt gatcttggac ttcccagcct ccagaactgt       300
     gagaaataaa tttctgttgt ttaagctacc cagtctatgg tattttgtta tagcagcccg       360
     aacagactaa gaca                                                         374
//
ID   RLTR19_MM   repbase; DNA   ; ROD   ; 467 BP.
XX
AC   .
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR19_MM.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-467
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR19_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2(9), 4-4 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 467 BP; 139 A; 67 C; 163 G; 98 T; 0 other;
     tgccccagag ggacaaaggg cagggaataa gagacaaaga caggagatag aggatgaggg        60
     agaaggggaa gggaacaagg gagaggggga agggatattt gtcctggagg acaaaggact       120
     gcctctggat agagaggaga cagacgtggc acataggaaa atggtagttt ataaaggtaa       180
     aaggggaaac cctgtgttag gatgaggtgt ttaattttaa ttgggcatgt taattaggtg       240
     agccaaaggg ggcttttgat tgctggactt caatactttg atagctggac cttggtagtc       300
     agcctcagga ggaggaagtg gccaaataag ggaatagacc ttggtggcta gctttaggaa       360
     tgtaatctaa tggtttttag caaggcagag ggaatggggg agaagggcaa ggcctgcggc       420
     ctgccagagc catgtttgcc atgctcaggc tggctagagt cccttca                     467
//
ID   THER1       repbase; DNA   ; ROD   ; 208 BP.
XX
AC   .
XX
DT   24-MAR-2000 (Rel. 5.02, Created)
DT   24-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   tRNA-related SINE element from therians.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; MIR;
KW   Repetitive sequence; THER1; THER2; tRNA.
XX
OS   Mammalia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi.
XX
RN   [1]
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing elements
RT   with common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96, 2869-2874 (1999).
XX
RN   [2]
RP   1-208
RA   Jurka J.;
RT   "THER1.";
RL   Direct Submission to Repbase Update (MAR-2000).
XX
SQ   Sequence 208 BP; 61 A; 41 C; 46 G; 58 T; 2 other;
     atatggtaca gtggatagag tactggacct ggaatcagga agacctgagt tcaaatccag        60
     cctcagatac ttactagctg tgtgaccttg ggcaagtcac ttaacctctg tctgcctcag       120
     tttcctcatc tgtaaaatgg ggataataat agcacctacc tcccagggtt gttgtgagga       180
     tyaaatgaga taatatttaa agyactta                                          208
//
ID   RICKSHA_0   repbase; DNA   ; ROD   ; 1708 BP.
XX
AC   .
XX
DT   09-JUN-1999 (Rel. 7, Created)
DT   09-JUN-1999 (Rel. 7, Last updated, Version 1)
XX
DE   RICKSHA_0 repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon fossil; RICKSHA; RICKSHA_0.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1708
RA   Kapitonov V.V., Jurka J.;
RT   "RICKSHA_0.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
CC   [1] (Consensus)
XX
CC   RICKSHA_0 is a non-autonomous DNA transposon (it does not carry
CC   an external part of HERV-L virus found in RICKSHA).
CC   Putative non-autonomous DNA transposon fossil. It has 70 bp-long
CC   terminal inverted repeat.
CC   Target site is unclear.
CC   Average identity of individual copies to the consensus sequence
CC   is
CC   about 86%.
XX
SQ   Sequence 1708 BP; 511 A; 303 C; 322 G; 572 T; 0 other;
     gggtttggat cataatccca aaagacacaa tcccaaacgc cataatcccg aatgttgaaa        60
     tcccgaaaga tcaaaatccc taaagtctaa aatccctaaa gtctaaaatc ccaaaaattc       120
     acacaggatg gttgcatcat gttaggcaga actgttattt tcttattgtc tttatgcaga       180
     aaaaatggat tttaattgaa tccccaaacc ataatgacag atttggaatt aggtgcgatc       240
     aaggcttcta aaagtgaatt tcaaggtgtt accaataaag tttgtttttt tccattcagc       300
     ccaatgcatt tggtggaaaa ttcagatgag tggattggcc atgcgatacg gcaacgacga       360
     aaacttcagt ttaaaaatgc gtcatttgcc tgcattggca ttccttccag ctgatgacat       420
     tccgggagct tttaatgaat taaagccgca tttgcctgaa gaagtcagcg aagttactga       480
     ctggttcgaa aataattatg tgcacggtag gataagaaga cacttacaca acggtgttgc       540
     cgttcgatta ccagtattgt ttctaccaaa tttgtggtct gtatatgagt gcatgcagaa       600
     tggatttcta tatacccaaa acaacataga agcatggcac agaagatggg aaaatttaat       660
     agggaatgct catgtcggtg tatatcgaat cagaagattc aaaaagagca gcgccacgta       720
     gaaaatgaat gtgaacatat tctccgagga gagccatgtc ctaaaagaaa aaaaaaagca       780
     gctattcatc gcgatgcaag acttcaaaat atagttaatg atcgtgaaag tcggccagct       840
     cttatggact atctccgtgc aattgcccat aatctatccc tgtaatatac tttttcatat       900
     gtcgaatttt ctttttagtt ttttttcact attttaaatt gtcagcatta ttttttacaa       960
     ttcgctatgc tatgtatttc atcttcgcat catttccaat actggaggta taaattgtgt      1020
     aaagactttt agagagttct aattcgtttt atgcattttt tgcaaatttg actccacgaa      1080
     agtgcattat cacaacgttg actttgtgtg taagcattgt gcgtgtacgt aaaaacgttg      1140
     aaacttcctc aataaatgaa gagatgtcct ttttgtacat ctgcatttgt gaaagataaa      1200
     atttctcgag atctcggctc tttgggcgac tgcatatgca gtggtgaccc atcgcggttt      1260
     ttgatcgatc tcgtcaaaag acttaggttg ttcgtcacgg tatttcagat gaccgcagtt      1320
     ataaagctgg gtgcacacaa ttaccaacca tagtgatatg cgtttataca tttccctttt      1380
     tgacctattt ctttatgaat acggttcgtc tgctcataac tgttataccc gtgcgactgt      1440
     cattagtata cctgagtgtt tatgcttgca aaaatatgta tgttattatt gcctatttta      1500
     ttgtgtaaag tggcctatga agtgttctgt catgttttta tatgtttctc aaataaatcc      1560
     ccttttaaaa atgtaaataa atatctttta aaaaattttt aaattatttt ttccagaatt      1620
     atatttttgg gattttgatc tttcgggatt tcaacattcg ggattatggc gttcgggatt      1680
     gtgtctttcg ggattatgat cggctccc                                         1708
//
ID   MLT1B       repbase; DNA   ; ROD   ; 390 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1b
DE   subfamily) - a consensus.
XX
KW   Non-LTR retrotransposon; MLT1b subfamily; MER15; MER18; MLT1B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-390
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-390
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
CC   [2] (Consensus)
XX
CC   Replaces MER15 (acc.# X59019) and MER18 (acc.# X59024).
XX
SQ   Sequence 390 BP; 117 A; 83 C; 92 G; 90 T; 8 other;
     tgttatgggc tgaattgtgt ccccccaaaa ttcatatgtt gaagtcctaa cccccagtac        60
     ctcagaatgt gactgtattt ggagataggg tctttaaaga ggtaattaag ttaaaatgag       120
     gtcattaggg tgggccctaa tccaatatga ctggtgtcct tataagaaga ggaaattwgg       180
     acacagacac gcacagaggr aagrccatgt gargacacag ggagaaggcg gccatctrca       240
     agccaaggag agaggcctca gaagaaacca accctgccgr caccttgatc tcggacttcy       300
     agcctccaga actgtgagaa aataaatttc tgttgtttaa gccacccagt ctgtggtact       360
     ttgttacggc agccctagsa aactaataca                                        390
//
ID   MSTAR       repbase; DNA   ; ROD   ; 1651 BP.
XX
AC   .
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 4)
XX
DE   MSTa- LTR internal retrotransposon sequence - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MSTa subfamily; MstII;
KW   MER10; MSTAR.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1651
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   PhD dissertation, Univ Southern California, 1995.
XX
CC   [1] (Consensus)
XX
CC   ORF: bases 48 to 1469.
XX
SQ   Sequence 1651 BP; 436 A; 353 C; 489 G; 371 T; 2 other;
     gaawattggt actgaggagt ggagcattgc tataaagata cctgaaaatg tggaagcgac        60
     tttggaactg ggtaacaggc agaggttgga agagtttgga gggctcagaa gaagacagga       120
     agatgaggga aagtttggaa cttcttagag acttgttaaa tggttgtgac caaaatgctg       180
     atagtgatat ggacagtaag ggccaggctg acgaggtctc agatggaaat gaggaactta       240
     ttgggaactg gagcaaaggt cactcttgtt atacattagc aaagagcttg gctgcatttt       300
     gcccctgccc tagagatttg tggaagtttg aacttgagag tgatgatcta gggtatctgg       360
     cggaagaaat ttctaagcag caaagcgttc aagatgtgac ctggctgctt ttaacagctt       420
     acagtcatat gcgagagcaa agaaatcact taaagttgga atttatattt aaaagggaag       480
     cagagcgtaa aagtttggaa aatttgcagc ctggccatgt gatagaaaag aaaaacccgt       540
     tttctggaga gaaattcaag caggctgcgg agcgaccgtt tgctaaagag attagcataa       600
     ctaaaaggaa gccaagtgct gatagccaag acaatgggaa aaaggcctcg aaggcatttc       660
     agaaatcttc gaggtggtcc ttcccatcac aggcccagag gcctaggagg actgaatggt       720
     ttcgtgggcc aggcccaggg ccccgctgcc ctgtgcagcc tcgggacact gctccctgca       780
     tcccggctgc tycggctcca gccgtggctc aaagggcccc aggtacagct cgagctgccg       840
     cttcggagag tgcaagctat aagccttggt ggcttccaca tggtgttaag cctgcaggtg       900
     cacagaatgc aagagtgaag gaggcttggc agcctccacc tagatttcag aggatgtatg       960
     ggaaatcctg ggtgcccagg cagaagcctg ctgcagggac ggagccctca cagagaacct      1020
     ctactagagc agtgccaaag ggaaatgtgg ggttggagcc cccacacaga gtccccaccg      1080
     gggcactgcc tagtggagct gtgggaaggg ggccactgtc ctccagaccc cagaatggta      1140
     gagccactgg cagcgtgcac cgccagcctg gaaaagccgc aggcatcaga ctccaacccg      1200
     tgagagcagc cacgtgggct gtgcccagca aagccacagg ggcggagctg cccaaggcct      1260
     tgggagccca cccctcgcac cagcgtgccc tggatgcgag acacggagtc aaaggagatt      1320
     attttggagc tttaagattt aatgactgcc ctgctgggtt tcggacttgc gtggggcctg      1380
     tagccccttt cttttggccc atttctccct tttggaatgg aaatatttac ccaatgcctg      1440
     taccaccatt gtatcttgga agtaaataac ttctttttga ttttacaggc tcataggtgg      1500
     aaggaacttg ccttgtctca gatgagactt tggactttgg acttttgagt taatgctgga      1560
     atgagttaag actttggggg actgttggga aggcatgatt gtattttgca atgtgagaag      1620
     gacgtgagat ttgggggaac caggggcaga a                                     1651
//
ID   L1MA5       repbase; DNA   ; ROD   ; 1042 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MA5) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; MER14; MER27;
KW   L1MA5 subfamily; L1MA5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1042
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-1042
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [2] (Consensus)
XX
CC   Contains identical ORF2 region consensus (subfam L1M2) as L1MA9.
CC   ORF2 ends at bp 684; average divergence of copies from consensus:
CC   15%
CC   Replaces MER27 (Acc. No. X12842).
XX
SQ   Sequence 1042 BP; 414 A; 149 C; 201 G; 252 T; 26 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa ataccgcatg       660
     ttctcactca tatgtggaag ctaaaaaagt tgatctcata gaagtagaga gtagaatagt       720
     ggttactaga ggctgggaag ggtagggrga ggggggrata gggagaggtt ggttaawggr       780
     tacaaaatta cagttagata ggaggaataa gttctagtgt tctgtagcac cgtagggtga       840
     ctatagttaa caayaattta ttgtatattt tcaaatagct agaagagagg attttgaatg       900
     ttcccaacac aaagaaatga taaatgtttg aggtgatgga tatgctaatt accctgattt       960
     gatcattaca cawtgtatac atgtatcgaa atatcacact gtaccccata aatatgtaca      1020
     attattatgt gtcaattaaa aa                                               1042
//
ID   GOLEM       repbase; DNA   ; ROD   ; 3029 BP.
XX
AC   .
XX
DT   13-JAN-1998 (Rel. 3, Created)
DT   31-OCT-2000 (Rel. 5.09, Last updated, Version 6)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   DNA transposon; Interspersed Repeat; 35S; GOLEM; MER17; MER29;
KW   MER7; MER7B; TIGGER3.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2724
RA   Drinkwater D.R., Burgoyne A.L., Skinner D.J.;
RT   "Two human repetitive DNA elements: A new interspersed repeat
RT   found in the factor IX gene, and a satellite 11 tandem repeat
RT   sequence.";
RL   Nucleic Acids Res 14, 9541-9541 (1986).
XX
RN   [2]
RP   1-2724
RA   Kaplan J.D., Duncan H.C.;
RT   "Novel short interspersed repeat in human DNA.";
RL   Nucleic Acids Res 18, 192-192 (1990).
XX
RN   [3]
RP   2713-2608
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [4]
RP   2327-2128
RA   Skalnik G.D., Strauss C.E., Orkin H.S.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem 266, 16736-16744 (1991).
XX
RN   [5]
RP   2787-2607
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328 (1993).
XX
RN   [6]
RP   2327-2128
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [7]
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [8]
RP   1-3029
RA   Kapitonov V.V., Jurka J.;
RT   "GOLEM.";
RL   Direct Submission to Repbase Update (JAN-1998).
XX
RN   [9]
RP   1-3029
RA   Smit A.F.;
RT   "GOLEM.";
RL   Direct Submission to Repbase Update (JAN-1998).
XX
CC   23 bp terminal inverted repeats and TA target site [7].
CC   GOLEM's non-autonomous elements are GOLEM_A (MER7A) and GOLEM_B
CC   (MER7B) repeats.
CC   Orientation of the repeat has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [8].
CC   The ORF from pos 442-2307 encodes a protein 39% identical (57%
CC   similar) over the full-length to the Tigger1 product.
XX
SQ   Sequence 3029 BP; 968 A; 580 C; 659 G; 820 T; 2 other;
     cagtcatgcg ccgcataacg acgtttcggt caacgacgga ccgcatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgtcgt agctgtcgta       120
     acgtcatagc gcaacgcatt actcacgtgt ttgtggtgat gctggtgtaa acaaacctac       180
     tgcgctgcca gtcgtataaa agtatagcac atacaattat gtacagtaca taatacttga       240
     taatgataat aaatgactat gttactggtt tatgtattta ctatactata ctttttatcg       300
     ttattttaga gtgtactcct tctacttatt aaaaaaaagt ttactgtaaa acagtatgcc       360
     gtgttacacc ggcagcagcc tcatacatct cgtgtttacc gcgtctcttg attgcatcat       420
     tttctcttgt gcttgattta atctcgtgtt gttttgttca tcatggcccc taagcgtaca       480
     aaatccacgg ctaatgttgc cagtaagagg ccacatcgag tgactgacct ggaaacgaaa       540
     ttaaaagtga ttaaggacta cgaaggtgga aaatcagtga tggttattgc tcgccagtca       600
     ggcatgtccc attccaccat agctacgatc ttgaagaaca agaacaaagt gacagaagct       660
     gttaaaggat ctgcttcatt gaaggcaacg agactaacaa aaattcgaga agggcctata       720
     tcagatatgg agaaacttct aatgacctgg attgaagacc agacacagaa gcatatccct       780
     ctcagcacca tgacgatcac ggccaaagca aaaagtttgt ttgcgatgtt gaaagaaaag       840
     gctggacccg actacgatgt tgaatttact gctagctctg ggtggtttaa acgattcaag       900
     aatcgttatt cattacataa tgtgaaagtg agtggtgagt ctgcgagtgc tgatgtgaag       960
     gcagctgaag aatttttgga aactctagat aagctgattg tggaggaaaa ttacttgcca      1020
     gagcaaatct tcaatatgga tgaaacctcc ctattctgga aacggatgcc tgaaaggact      1080
     ttcatccata aggaggccaa gtcaatgcca ggtttcaagg cttttaagga caggataaca      1140
     gtcttgcttg ggggcaatgt tgcaggctac aaattgaaac cctttgtgat ctggcacagt      1200
     gagaacccca gggccttcaa gcatatcaat aagcacacac tgccagtgta ctacaggagc      1260
     aataagaagt catggatgac ccagctcctc ttccaagatg ccctcctgaa ttgctatgcc      1320
     agcgaaatgg agaagtactg tttggagaat aacatacctt tcaagatttt gcttattgtt      1380
     gataatgctc ccgcacatcc tccttttatt ggtgatcttc atcccaatat caaagtggtg      1440
     tttctccctc caaacaccac ctctttgatc caaccaatgg atcaaggagt tatagcagct      1500
     tttaaggcct actacctgag gaggaccttt gcccaggcta ttgctgcaac tgaggaagac      1560
     actgagaaga cactgatgca attctggaag gattacaaca tctatgactg catcaagaac      1620
     cttgcttggg cttggggtga tgtcaccaag gagtgtatga atggcatctg gaagaagaca      1680
     ctcaagaggt tcgtccgtga cttcaaagga tttgccaagg atgaggaggt tgcaaaaatc      1740
     aacaaggctg tggttgagat ggcaaacaac tttaacctgg gtgtggatga ggatgacatt      1800
     gaggagctcc tagaggtggt tcctgaggaa ttgactaatg aggagttgtt ggaactggaa      1860
     caggaacgca tagctgaaga agaggcaaga gaaaaggaaa ctgcaggaga agaaaaagaa      1920
     gaacccccaa gaaaattcac agtgaagggt ttagcagaag cttttgcaga cctcaacaag      1980
     ctccttaaaa agtttgaaaa catggacccc aacaccgaaa ggttttcatt aatagagagg      2040
     aatgttcatg gtgcattatc tgcttacaag caaatctatg atgaaaaaaa gaaacaaacc      2100
     aagcaaacca ccatggacat atttctgaaa agagtgacac ctcctcaaga agagcctcag      2160
     gcaggtcctt caggaggtat tccagaagaa ggcattgtta tcataggaga tgacagctcc      2220
     atgcgtgtta ttgcccctga agaccttcca gtgggacaag atgtggaggt ggaagacagt      2280
     gatattgatg atcctgaccc tgtgtaggcc taggctaatg tgtgtgtttg tgtcttagtt      2340
     tttaacaaaa aagtttaaaa agtaaaaaaa aaataawttt aaaaatagaa aaaagcttat      2400
     agaataagga tataaagaaa gaaaatattt ttgtacagct gtacaatgtg tttgtgtttt      2460
     aagctaagtg ttattacaaa agagtcaaaa agttwaaaaa attaaaaagt ttataaagta      2520
     aaaaagttac agtaagctaa ggttaattta ttattgaaga aagaaaaata ttttaaataa      2580
     atttagtgta gcctaagtgt acagtgttta taaagtctac agtagtgtac agtaatgtcc      2640
     taggccttca cattcactca ccactcactc actgactcac ccagagcaac ttccagtcct      2700
     gcaagctcca ttcatggtaa gtgccctata caggtgtacc attttttatc ttttataccg      2760
     tatttttact gtaccttttc tatgtttaga tatgtttaga tacacaaata cttaccattg      2820
     tgttacaatt gcctacagta ttcagtacag taacatgctg tacaggtttg tagcctagga      2880
     gcaataggct ataccatata gcctaggtgt gtagtaggct ataccatcta ggtttgtgta      2940
     agtacactct atgatgttcg cacaacgacg aaatcgccta acgacgcatt tctcagaacg      3000
     tatccccgtc gttaagcgac gcatgactg                                        3029
//
ID   GOLEM_B     repbase; DNA   ; ROD   ; 1205 BP.
XX
AC   .
XX
DT   25-FEB-1998 (Rel. 3.01, Created)
DT   31-OCT-2000 (Rel. 5.09, Last updated, Version 4)
XX
DE   Nonautonomous DNA transposon.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; 35S; GOLEM;
KW   GOLEM_B; MER17; MER29; MER7; MER7B; nonautonomous DNA transposon.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-944
RA   Drinkwater D.R., Burgoyne A.L., Skinner D.J.;
RT   "Two human repetitive DNA elements: A new interspersed repeat
RT   found in the factor IX gene, and a satellite 11 tandem repeat
RT   sequence.";
RL   Nucleic Acids Res 14, 9541-9541 (1986).
XX
RN   [2]
RP   1-944
RA   Kaplan J.D., Duncan H.C.;
RT   "Novel short interspersed repeat in human DNA.";
RL   Nucleic Acids Res 18, 192-192 (1990).
XX
RN   [3]
RP   932-825
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [4]
RP   546-326
RA   Skalnik G.D., Strauss C.E., Orkin H.S.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem 266, 16736-16744 (1991).
XX
RN   [5]
RP   1004-824
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328 (1993).
XX
RN   [6]
RP   79-546
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [7]
RP   1-1
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [8]
RP   1-1205
RA   Kapitonov V.V., Jurka J.;
RT   "GOLEM_B.";
RL   Direct Submission to Repbase Update (1998)..
XX
CC   Replaces MER17, MER29, MER7B.
CC   Differs from GOLEM and GOLEM_A by internal deletions.
CC   23 bp terminal inverted repeats, TA target site [7].
CC   Orientation has been changed based on the reconstruction
CC   of GOLEM internal sequence [8].
XX
SQ   Sequence 1205 BP; 386 A; 208 C; 217 G; 367 T; 27 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagnctc aggcaggtcc       360
     ttcaggagat attccagaag aargcatcgt tatcatagga gatgacagct ccatgcatgt       420
     tattgcccct gaagaccttc cagtgggaca aaatgtggag gcggaagaca gtgatattra       480
     tgatcctgac cctgtgtagg cctaggctaa tgtgtgtgtt tgtgtcttag tttttaacaa       540
     aaatntttta aaaaataaaa aaatwaaaaa tttwwaaata gaaaaaagct tatagaataa       600
     ggatataaag aaagaaaata tttttgtaca gctgtacaat gtgtttgtgt tttaagctaa       660
     gtgttattac aaaagagtca aaagttaaaa atgcaaaagt ttataaagta aaaaagttac       720
     agtaagctat ggttaattta ttgctgaaaa arwwwwwwww wwwwwataaa wttagtatag       780
     cctaagtgta cagtgtttat aaagtctaca gtagtgtaca gtaatgtcct aggccttcac       840
     attcactcac cactcactca ctgactcacc cagagcaact tccagtcctg caagctccat       900
     tcatggtaag tgcyctatac aggtgtacca ttttttatct tttataccgt atttttactg       960
     taccttttct atgtttagat acacaaatac ttaccattgt gttacaattg cctacagtat      1020
     tcagtacagt aacatgctgt acaggtttgt agcctaggag caataggcta taccayatag      1080
     cctaggtgtg tagtaggcta taccatctag gtttgtgtaa gtacactcta tgatgttcgc      1140
     acaacgaaat tgcctaatga cgcatttctc agaacgtatc cccgtcgtta agcgacgcat      1200
     gactg                                                                  1205
//
ID   GOLEM_B     repbase; DNA   ; ROD   ; 1205 BP.
XX
AC   .
XX
DT   25-FEB-1998 (Rel. 6.4, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   Nonautonomous DNA transposon.
XX
KW   MER7; 35S; MER17; MER29; MER7B; GOLEM;
KW   Nonautonomous DNA transposo; GOLEM_B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-944
RA   Drinkwater D.R., Burgoyne A.L., Skinner D.J.;
RT   "Two human repetitive DNA elements: A new interspersed repeat
RT   found in the factor IX gene, and a satellite 11 tandem repeat
RT   sequence.";
RL   Nucleic Acids Res 14, 9541-9541 (1986).
XX
RN   [2]
RP   1-944
RA   Kaplan J.D., Duncan H.C.;
RT   "Novel short interspersed repeat in human DNA.";
RL   Nucleic Acids Res 18, 192-192 (1990).
XX
RN   [3]
RP   932-825
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [4]
RP   546-326
RA   Skalnik G.D., Strauss C.E., Orkin H.S.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem 266, 16736-16744 (1991).
XX
RN   [5]
RP   1004-824
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328 (1993).
XX
RN   [6]
RP   79-546
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [7]
RP   1-1
RA   Smit F.A., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [8]
RP   1-1205
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?.";
RL   Direct Submission to Repbase Update..
XX
CC   Replaces MER17, MER29, MER7B.
CC   Differs from GOLEM and GOLEM_A by internal deletions.
CC   23 bp terminal inverted repeats, TA target site [7].
CC   Orientation has been changed based on the reconstruction
CC   of GOLEM internal sequence [8].
XX
SQ   Sequence 1205 BP; 386 A; 208 C; 217 G; 367 T; 27 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagnctc aggcaggtcc       360
     ttcaggagat attccagaag aargcatcgt tatcatagga gatgacagct ccatgcatgt       420
     tattgcccct gaagaccttc cagtgggaca aaatgtggag gcggaagaca gtgatattra       480
     tgatcctgac cctgtgtagg cctaggctaa tgtgtgtgtt tgtgtcttag tttttaacaa       540
     aaatntttta aaaaataaaa aaatwaaaaa tttwwaaata gaaaaaagct tatagaataa       600
     ggatataaag aaagaaaata tttttgtaca gctgtacaat gtgtttgtgt tttaagctaa       660
     gtgttattac aaaagagtca aaagttaaaa atgcaaaagt ttataaagta aaaaagttac       720
     agtaagctat ggttaattta ttgctgaaaa arwwwwwwww wwwwwataaa wttagtatag       780
     cctaagtgta cagtgtttat aaagtctaca gtagtgtaca gtaatgtcct aggccttcac       840
     attcactcac cactcactca ctgactcacc cagagcaact tccagtcctg caagctccat       900
     tcatggtaag tgcyctatac aggtgtacca ttttttatct tttataccgt atttttactg       960
     taccttttct atgtttagat acacaaatac ttaccattgt gttacaattg cctacagtat      1020
     tcagtacagt aacatgctgt acaggtttgt agcctaggag caataggcta taccayatag      1080
     cctaggtgtg tagtaggcta taccatctag gtttgtgtaa gtacactcta tgatgttcgc      1140
     acaacgaaat tgcctaatga cgcatttctc agaacgtatc cccgtcgtta agcgacgcat      1200
     gactg                                                                  1205
//
ID   HERVK3I     repbase; DNA   ; ROD   ; 7243 BP.
XX
AC   .
XX
DT   17-JUL-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   HERVK-related endogenous retrovirus flanked by LTR3s - a
DE   consensus sequence of the internal part.
XX
KW   endogenous retrovirus; HERVK superfamily; LTR3; HERVK3I.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-7239
RA   Kapitonov V.V., Jurka J.;
RT   "HERVK3I.";
RL   Direct Submission to Repbase Update (JUL-1998).
XX
CC   [1] (Consensus)
XX
CC   Average similarity of HERVK3I individual copies to the consensus
CC   sequence is about 90%.
CC   As other members of HERVK superfamily, it has 6 bp target site
CC   duplications. HERVK3 is flanked by LTR3s.
CC   Similarity of HERVK3I consensus sequence to the known
CC   retroviruses
CC   is shown below:
CC   ----------------------------------------------------------------
CC   start end RETROVIRUS start end identity
CC   ----------------------------------------------------------------
CC   HERVK3I 381 452 HERVK 281 352 0.71
CC   HERVK3I 1539 1809 HERVK 1772 2026 0.70
CC   HERVK3I 1937 2523 HERVK 2194 2779 0.61
CC   HERVK3I 2684 3273 HERVK22I 2334 2914 0.65
CC   HERVK3I 3335 3992 HERVK9I 3015 3664 0.61
CC   HERVK3I 3996 4464 HERVK 4240 4702 0.58
CC   HERVK3I 4588 5193 HERVK 4826 5434 0.64
CC   ----------------------------------------------------------------.
XX
SQ   Sequence 7243 BP; 2190 A; 1569 C; 1503 G; 1979 T; 2 other;
     tagtggcgcc ccgaacagcg acagaatcag gcgctcaaca agtggcatcc gaacacaggg        60
     actttgagga cgtgaacgaa gaaggtctgc tggagcagag aaactgaaat tgacaagacg       120
     aatggggacc ctgggatgag tctgctggca gcagatataa ggtcagtgcc ctaacgaggt       180
     actgggagca atataaggtc agtgccttaa agaagtactg ggaatgggag tttttctgaa       240
     tcggaggtaa catggggcag aatttgtctg ttgaggaaaa lacattatcg tgcagttgct       300
     taaagttttg ttgaaacaat ctggtgctca ggttaattct cagacattaa ctaagatgct       360
     gcaggaggtt attacgcata acccatggtt tccacaggca ggcactcctg atgtagaaaa       420
     ttggcacaga gcaggagaag gattaaaaca ggctcatcaa aaaggtctta aagttgattc       480
     ttctgctttc tccactagga gtttagttca tactgtcctt ctgccattat atccttttta       540
     ttctgctgga cagcaggagt catgttctga gtctaaaaat ctgaaagaat ctgttgtccc       600
     acccacagca ccaattgaaa ataaaaaaca ggagagggag gataaaaatt ggcctatacc       660
     gccccctcca gttgcagaaa catctgtacc gcctccttca gtagccgaaa tagagacctc       720
     aatacaaaga attttatgct ctgctgccat agctggagag cccttaggac ctctgcactt       780
     ttcctatttc cgtaaggcct gatccaaaca atccacagca gtttattcat gaacactccc       840
     cactagagtt tacgttgttg aaggaattaa aaattaagtg taattaataa tgggatacag       900
     agcccattca ccttaggatt gctagaatct gtatttggtg ctatgcgcct tctacccttt       960
     gatgtaaaac atttggctcg cacttgtttg tctgctactg catacctgac ttggaattta      1020
     aattggcaag aaatgtgtgc agaccaggct agacagaatc atgcttctgg acacggagac      1080
     attacagagg gtatgctgtt aggtaatggc cctttattca gacctggcat gtcaaatggc      1140
     actcccagat cctgcttatc agcagtgtgc acaggctgct atgcacgcct gggccacaat      1200
     tccagaagag agagtcccag tacaatcctt tttacatctc atgcaagggt cacaggaacc      1260
     ctacgtgcaa tttcttgcaa gattacaaga ggcagtgaag catgaaattc ctcataccgc      1320
     tggcacagaa atgctaacct taactttagc ttttgagaat gcaaacgcag attgtaaacg      1380
     tgcactggca cctgtgaggt gtaacaaaac ttgggaaatt ttctcagaac ttgtcaggat      1440
     gtagaaactg agcttcattg ctctgcaatt ttagctcaag caatggctaa tttagtagtt      1500
     gacaaatcta aaaggagccg acggtcaaac cctaaagtgg gaaaatgtta taattgtgga      1560
     aaaactggac attttaaaaa ggaatcatga ctgatctcag ggcagaaagg accttataat      1620
     gtggtgccct ccacccccat ggcccagcgg aaaaaaacgc caggactctg tcctcactgt      1680
     aacaaaggaa atcactgggc tattcaatgc cgctcaaaat ttcatcaaaa ctgcaaccac      1740
     ctgtcaggaa acgagaaggg ggcctggacc cgggcccctc aaacaatgag ggcattccca      1800
     gttcagacca caaccccact tcaggggtgg gtcccaggag gaacattgat tccctcaccc      1860
     caggaacacc aggaagtgca ggattagatc ttccagtcag agaaagaatt acattaattg      1920
     gtggagacaa acctatcaaa gttcccattg gcatttgggg acctttacca gcaggataca      1980
     gtagactaat tttaggcaaa agctgcctta acttgcaagg cattactgta gtcccaggag      2040
     tagctgactc tgattatgaa ggagaaattc aagtagtttt aatgtcacaa gatctttggg      2100
     tttttgaacc ggaagaatat attgctcaat tattgcttat tccctgcaaa ttacaccctt      2160
     ctccataaaa ggagaaacga ggaaataaag ggtttgggag cacaactaca tgagaaatct      2220
     aatgattcac aacctatagc ttataataga cccacctgtg tagtacaaag taaaggaaag      2280
     aaattgtatg ggcttatgga cacaggagct gatgtgtcag taatatccag taaggactgg      2340
     cccccagcat ggcctctcag actaacctcc acatccctag tgggagtagg agcagctaaa      2400
     agtgttcaac agagtgctga gattttacct tgtcttggtc cggatggaca atcatgtact      2460
     ttccagcctt atgatgcaaa tatagctatc aatttatggg gtcaagaatt acttacagca      2520
     tgggatatga gacttacaaa tgaaaacttt cataacccag gatttaaaat gttgaaggac      2580
     atgggatatc agagtggaaa aggtttaggg aaattcctac aaggaaaccc taacccgata      2640
     tctataactg gagaaacaga tagaaaaggg caaggatgtc aggatttctg atggggatca      2700
     ttgatatttc tcctcgaccc actgccttac cattagaatg gctttgtgac aaacctatgt      2760
     gggtggatca atggccccta acacaggaga agctagatca acttcatctg ttggtaaaag      2820
     aacaattgaa tgcaggacat atagagaaga gtttcagccc ctggaattca ccggtatttg      2880
     ttattccaaa aaagtctgga agatggtgac tactacatga tttgagagtt attaatgcgc      2940
     aaattaaacc aatgggtgcc ttacagcaag gtctaccttc cccagcagcc attccaagag      3000
     acaggcctct tgtagtaata gatcttaagg attgtttctt tactatacca taacacgaga      3060
     aggataagcc tcaatttgcc ttctctgtgt cttctattaa tcatagagaa cctgtctctc      3120
     gctatcagtg gaaagtttta ccccaaggca tgcttaacag tcctacatta tgtcagcatt      3180
     ttgtaggaag agcattaaag gagccttgaa atatgtttcc cactgtctat atcattcatt      3240
     ttatggatga tattcttttg gccgctccta cagatcaaat tttacatcag ttattcagag      3300
     aaacaaaaca ggccttaact aaatggaatc tcaaaattgc tccagagaag gtgcaaacaa      3360
     cttccccata ccagtactta ggaactattg ttatggaggg gagtgtacgg cctcagaaag      3420
     tagttctccg taagggcagg ttacagactt tgaatgattt ccaacaatta ttaggggata      3480
     ttaattggct gtgcccaatg ctaggtattg ctacttatca actcacacac ctttatcaaa      3540
     ccctccaagg agattcttca ttagattctc ctcggcaatt tactaaggag gcagaagctg      3600
     agttacagct tgtagaacag atgcttcagc aacaacatgc ctcctggcta cagccacaaa      3660
     agcctttgct tttgtttatt cttcctaccc cccattctcc aacaggactt ttaggccaat      3720
     tcatagacaa atctgtaatc gtaatagaat ggctctttct atctaatcag tgaaatcttt      3780
     gcaagtttat ctttctttaa ttactcaact tataacaata ggtaggcata ggtcaaaaat      3840
     gcttatggga tatgatccag ataaaattat tgttcccttg gattcccaac aacaggccac      3900
     agcatgggaa atgtcgactg catggcaaat cacttttgca gattttgtgg gaataataga      3960
     taaccattat ccatcagaca aaattttgca attttataaa gttcaccctt ttatccttcc      4020
     tgtaattact catcacaagc ctattccagg tggacagact tattttactg atggctcttc      4080
     taaaggccgt gcagctattt atggacctaa acatactcaa acaataatga cctctggggt      4140
     ttcagctcaa cgctcagact taattgcagt cattcaggtt ttacagctga cagcttcaga      4200
     tcctatcaac attgtctgta attcagctta tgttgtaaat gtagccagtt gcatagaaac      4260
     tgctacaatt aaaaatacac tagacccaga actgcttaat ttgtttctaa gacttcacac      4320
     agctattggc tctccttcgt ctccttttca tatttctcat attcgctctc acacacaact      4380
     tcctggacca ctatctctag gtaatgatag agcagataaa ctgatgagtt ctgtgtttca      4440
     gcaagctcaa gcgtctccat gcatttctgc accaaagtac ttctgcctct actcgcatgt      4500
     tccatttstc tcgcagccaa gctagggcta taatacaagc ctgtcctact tgccagcatg      4560
     tccctggagc cgcacctgta gaaggttgta acccatgagg tttggctcca aatgaaatct      4620
     ggcaaatgga tgttacacaa gtagcagcct ttagtaaact tagctatgtt ctacgaatta      4680
     tagacactta ttctcatatg ctgcatgcta catgccaaac aggtgagaca gctggtcatg      4740
     tacggcaaca ttgtttgtca tcatttgctc atatggggat cactaaacaa ttaaaacctg      4800
     acaatggacc agcttatact agtcatgctt ttcaaatatt cttacagctt tgagctataa      4860
     cccataaaca aggaatccat tataatccta gaggacaagg aattatagag ttggcacatc      4920
     aaacattaca acaagtgttg aaaaaacaga aagggaggga taggagacca cttcacacct      4980
     caaacaaaac tacacttagc cttattatct ttaaattttt ttgactcctg gtagagatgg      5040
     taagactcca gcagaaagac attggcaagt gttagaggaa aagaggaaag tttatccgaa      5100
     agtgttattg aaatcccccg gagaagagac aatggaaagg tctgttggat ttactgacgt      5160
     ggggatgagg gtatgcttgt gtttttcagg gagatggaca agccgtgtgg gtgccctcaa      5220
     ggtggatgtg accatggaac gggagactag aggaacccag ggtggccaac tatgggcctg      5280
     gtccctctgg tctgagccat gagccagctg agctagagtg caaagatgga gagaaggccg      5340
     accggagtcc agacgacatc aacccccata acctgggagc aactcaagaa taccaatcag      5400
     gaagctggga aactactgga gcatcagagc caggcaaaac accctgattc catgttcttg      5460
     gccatgttag tcataatgtc ctgtgtggta tgttttccct gtgcagaggc aaaaacattt      5520
     tgggcatatg ttcccaatcc cctagtagta caacctatgc tttggagtga cactcctcct      5580
     gagatttatc gtgatcagga agtatgggct ccaggacccc taactcccct gacaatagaa      5640
     cagttagact ctcagaacaa tgtcattaat tatacgaccc cacgagaagg actcctcttg      5700
     tgtatcacta caaagacatc gcttaactgt agctgtctta taattcaagc tcaacaatgg      5760
     ttgagtcact atggaaaagt catgtgccta ttaagtcttg gttctattaa tgtaacaggt      5820
     gtgctaacca accattcccg gcccaatcac cctaatcgtg ctgactatat ggaatggatt      5880
     cccttcgata gttactaccc cccctcacat ggacccaatg tcttgaccca ctggctagaa      5940
     aacaatctat gttaagtgga gacattgtgg attggggacc taaaggtctt ctgtatggaa      6000
     gacatgaaaa tcagaaatca tggcacaaac ttcgctggca ttggtgggaa gattttaaag      6060
     cttcttcttt ataccacacc gggatctaat cccagtctgc cacccagatt gcttgacatg      6120
     gagcaggctt tagcccgcct cttcctcagt ggcattatct agggaggaaa ggaccaatcc      6180
     aagagatgtt atggaaggca gcactcccat ttatgaatgg agcatctggg ttcgggatac      6240
     tatccagtga tagcaatagt aagcaacaca gtcttaatgt tacatttgta aagaatatca      6300
     ccactcaatt tatggtttgt ctttttaatc cttatgcttt tttggcgact aagaaggacc      6360
     agctccaggt aaacaatatc caattgacct gtaaatcttg ccagttatgt cactgcatta      6420
     atcatagcac attgcaaaca cataatgtct ctactttgat aattttgggt cgcatccctg      6480
     ggctatggat tcctgttaat ctgtcccagc cttgggctac cacacctgct ttgcacttta      6540
     tgaaacatct tctaactcag cttactcatt gtgcccgtag agccttaggc atgataattt      6600
     ttgctattgt ttccttggtc acattaataa cttccgttgt gatgtcctct gtagctttgc      6660
     atagttctat tcaaacaact cagtacatgg aaaactggat gcgtatagcc aaccaagcat      6720
     ggccacttca gaataaaatt aacactgagt tacaaactga agtggcattg ttgaaatcca      6780
     cggctctatg gttaggagaa caagtacaaa gcttgcaatt gcaacagcaa ttgcatgatc      6840
     attttaatca cactcatatt tgtgtaacca acttagaata taaccaaagt gagtatccat      6900
     gggaccttgt gaaagcccat ttgcagggag cttgcacatc caacatcacc tttgatatcg      6960
     gtgaattaca aaacaaaatt cttgatttaa atggacaaac tcaagagttt cagccttctt      7020
     tagaagacga gaccaaattc cagcaaggcc tggagagcct caacccttgg accagtctaa      7080
     agcaccacat taacatctta tatgtagtcc ttggaataat gttgttttgt ctctgtcttc      7140
     tgttcatagt ctgtaaaact ggatggactg ccaatcagaa aatgagagct gcccagcctg      7200
     accttacatt ctttcaatta attcataaac agaaaggggg ata                        7243
//
ID   LINE2       repbase; DNA   ; ROD   ; 2750 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   MIR2/LINE2 repetitive element - a consensus.
XX
KW   LINE; L2 family; MIR2; MIR2/LINE2; LINE2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2750
RA   Degen J.S., Davie W.E.;
RT   "Nucleotide sequence of the gene for human prothrombin.";
RL   Biochemistry 26, 6165-6177 (1987).
XX
RN   [2]
RP   2601-2750
RA   Smit F.A., Riggs D.A.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation.";
RL   Nucl. Acids. Res 23, 98-102 (1995).
XX
RN   [3]
RP   1-2750
RA   Smit F.A.;
RT   "LINE2.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [3] (Consensus)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
CC   This sequence represents the 3' part of an ancient LINE-like
CC   element
CC   which was responsible for the amplification of the MIR elements.
XX
SQ   Sequence 2750 BP; 593 A; 941 C; 336 G; 815 T; 65 other;
     ctgtcattca ttaccgntcc ttgttgcagt catccatcga gcccggctcg gtcactccct        60
     ctcatttctc gaagaktttr tctcctagnt caactgtcac tctctcataa taatantcct       120
     gtcataattc ttggtgattt caatatccac atagacgatc catccaatac tctggcctct       180
     cagttccttg acctcctctc tcccgtggtc ttgttctcct ctacccactc tcagccactc       240
     actcccatgg tcatacccta gatcttgtca ttactaataa ctgcaactcc tccataatct       300
     caatttcaag catccyactc ttttaccacy acctcctatc tttctagctc actctctctg       360
     gtgccctaac tccaataaty ctttgacccc accgagacct mcaatccatt gatctcatat       420
     gcttttcact gtnccgtgtc ctcttccctc ctttcwttgc tcagattcca tggtcaatca       480
     ttataatcac tcccwtacan ataccctcaa ctcccttgcc cctytctcmc tttgtcttac       540
     ttrcttgnca aaaccacaac cctggttaaa tccaactntc cgactaattt rcgcctgcac       600
     ccgngcagct aaacatggct gragaaaaat acacaaccat gctgactggt ctcactttaa       660
     atttatgacc acgaacctca agtgrgccct taatgctgcc aggcaattnt actacatttc       720
     cctagtccat tcactctccc actctcctag atgactattt yatactttct tnyttctcaa       780
     acctccaaca yyyyytncca tctttactct cagctgatga ccttgcttcc tatttcactg       840
     agaaaataga agcaatcaga agagaatttc cacatgctcc caccaccaca tctacccacc       900
     tacctgcatc tgtacccata tactctgcct tccctcctgt taccgtggat gaactgtccg       960
     tgctcctatc taargccaac ccctccactt gtgcactaga tcccatcccc tcttgcctac      1020
     tcaaggacgt tgctccagca attctcccct ctctctcctg catcatcaat ttttccctct      1080
     ctactggatc attcccatca gcatataaac atgctgnnat ttctcccatc tttaaaaaac      1140
     aaaaattctc cctcgacccc acttccccct ccagctaccg ccctatttct ctgctcccct      1200
     ttacagcaaa acttctcaga agagttgtct atactcgttg tctccacttc ctcacctccc      1260
     gttctctctt aaacccactc caatcaggct ttcgtcccta ccactccact gaaactgctc      1320
     ttgtcaaggt caccaatgac ctccacgttg ccaaatccag tggtcagttc tcagtcttca      1380
     tcttacttga cctctcagca gcatttgaca cagttgatca ctccctcctt cttgaaacac      1440
     tttcttcact tggcttccag gacaccacac tctcttggtt ttcctcctac ctcactggcc      1500
     gttccttctc agtctccttt gctggytcct cctcatctcc ccgatctcta aatattggag      1560
     tgccccaggg ctcagtcctt ggacctcttc tcttctctat ctacactcac tccctgggtg      1620
     atctcatcca gtcycatggc tttaaatacc atctatacgc tgatgactcc caaatttata      1680
     tctccagccc agacctctcc cctgaaytcc agactcctat atccaactgc ctactcgaca      1740
     tttccatttg gatgtctaac agrcatctca aayttaacat gtccaaaact gaactcctga      1800
     ttttcccccc caaacctgct yctcccgcag tcttycccat ctcagttaat ggcaactcca      1860
     tccttccagt tgctcargcc aaaaaccttg gagtcatcct tgattcctct ctttctctca      1920
     caccccacat ccaatcyatc agcaaatcct gttggctcta ccttcaaaat atatccagaa      1980
     tccgaccact tctcaccatc tccactgcya ccaccctggt ccaagccacc atcatctctc      2040
     acctggacta ctgcaatagc ctcctaactg gtctccctgc tyccaccctt gcccccctnc      2100
     agtctgttct cagcacagca gccagaatga tccttttaaa atgtaaatca gatcatgtca      2160
     ctccyctgct caaaaccctt caatggcttc ccgtttcact cagagtaaaa kccaaagtcc      2220
     ttaccgtggc ctacaaggcc ctatatgatc tggcccccgc ytayctctct aacctcatct      2280
     tctaccactt tccccctcgc tcactctgct ccagccacac tggcctcctt gctgttcctc      2340
     gaacacgcca rgcwcgttcc tgcctcaggg cctttgcact tgctgttccc tctgcctgga      2400
     acgctcttcc cccagatatc cacgtggctc actccytcac ctcmttcagg tctctgctca      2460
     gatgtcacct yctcagagag gccttccctg accaccctat ctaaaatagc acacccyctc      2520
     ccccatcatg cccatytttc ttaccycgct ttatttttct ycatagcact tatcaccatc      2580
     tgacayacta tatwatttay ttgtttgttt gtttrttgtc tcctccacya gaatgtaagc      2640
     tccatgaggg cagggatttt gtctgttttg ttcactgctg tatccccagc gcctagaaca      2700
     gtgcctggca catagtaggc gctcaataaa tatttgttga atgaatgaat                 2750
//
ID   MER63C      repbase; DNA   ; ROD   ; 938 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   MER63C repetitive element - a consensus.
XX
KW   nonautonomous DNA transposon; MER63C.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-938
RA   Smit F.A.;
RT   "MER63C.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   Putative internal deletion product of DNA transposon.
CC   15 bp terminal inverted repeats, subfamilies only differ by size.
XX
SQ   Sequence 938 BP; 299 A; 147 C; 161 G; 323 T; 8 other;
     ccagtggtgt gctggtaaat gtttaacaac tggctctctg ggggaggwaa tgymtkgatt        60
     tgtgtattca catatataag tttattataa attttactga tataaaggac gtrtagcaca       120
     caatttacaa ataacaataa aatatacaat attctttatt gtaaattcca tatagccagt       180
     tgattctcac agaatgcttt cgttgatttt tgcccaaact cttgtatccg tagccgaact       240
     atgtttgtaa ttgacgaaca agtgtagttc naacatgaat gttggttgat attttcgttt       300
     atgttaatga gtaagatgaa agtgaaacaa cgaagacgta tgtcagaact tcactcattt       360
     gtcaatgatg tgagtgactt ctttgctgaa tcggatggta gttttcaaac attagaagaa       420
     tattttctca atttttggtg ctattcgcaa tgtaacagct acagacatga cacactttta       480
     agtttaatct gcatcattaa cattttctcc atcactttct taagtctaga caatcaacaa       540
     aacaataaat caagccctga tttgtagcgt ttgccgattt ccgtggtgta aatactccca       600
     ccgtggccga tttcaagcta ccagcgtgat gtcactgaat gsggagttgg gaagagatgc       660
     acagtagcac acyattatat agtatttcca ccatacagat acaatagacg taaataacct       720
     caagagcata gataatagta aaatgtagta aaataattag gaagtgatga gttttgagta       780
     tttattacct ttgtttttaa tataatttat ttaattgtaa gtttatataa tttaaatttc       840
     tttgttttta atataattta tttaattgta agtttatata atttaaattt caatcggctc       900
     tcgcgagccg atacgagcca gctccagcac accactgg                               938
//
ID   HERVS71     repbase; DNA   ; ROD   ; 6069 BP.
XX
AC   Z70664;
XX
DT   27-JAN-1997 (Rel. 6, Created)
DT   20-MAY-1999 (Rel. 7, Last updated, Version 3)
XX
DE   Internal sequence of endogenous retrovirus HERVS71.
XX
KW   Endogenous retrovirus S71; simian sarcoma virus; HERVS71.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-6069
RA   Werner T., Brack-Werner R., Leib-Moesch C., Backhaus H., Erfle V.,
RA   Hehlmann R.;
RT   "S71 is a phylogenetically distinct human endogenous retroviral
RT   element with structural and sequence homology to simian sarcoma
RT   virus (SSV).";
RL   Virology 174, 225-238 (1990).
XX
RN   [2]
RP   1-5491
RA   Kabat P., Tristem M., Opavsky R., Pastorek J.;
RT   "Human endogenous retrovirus HC2 is a new member of the S71
RT   retroviral subgroup with a full-length pol gene.";
RL   Virology 226, 83-94 (1996).
XX
RN   [3]
RP   1-6069
RA   Blusch H.J., Haltmeier M., Frech K., Sander I., Leib-Mosch C.,
RA   Brack-Werner R., Werner T.;
RT   "Identification of endogenous retroviral sequences based on
RT   modular organization: proviral structure at the SSAV1 locus.";
RL   Genomics 43(1), 52-61 (1997).
XX
RN   [4]
RP   1-6069
RA   Kabat P., Tristem M., Opavsky R., Pastorek J.;
RT   "Human endogenous retrovirus HC2 is a new member of the S71
RT   retroviral subgroup with a full-length pol gene.";
RL   Virology 226, 83-94 (1996).
XX
DR   GenBank; Z70664; Positions       1    6069.
XX
CC   LTR's of HERVS71 are listed in REPBASE as LTR6A sequences.
CC   LTR6 (Z70664; position 5492-6069) reported by [1,2] is in fact
CC   an env-related portion of HERVS71 [3].
XX
SQ   Sequence 6069 BP; 1596 A; 1682 C; 1276 G; 1515 T; 0 other;
     ggatccaaaa tagccaccct gcagacggcc ttgctcacct tttctgtcat cccataactt        60
     ttccagtgcc cttaaataac acactatgta cacaaaccta tgcctgtgct gctttactct       120
     gtctggaccc ttattctatc cccctgtggc tactctccta ccttaggaaa gatctgagtg       180
     gcccctttcc tccttacccc catcccttaa cccacacagc tcgttttcct gtgtcacagc       240
     aagtccagca cctccaagac ttggctctgc tctccatcct aaaaccctta aaagaaaggg       300
     ctgagtttga actttttgcc tttgagtcgg ggagacacca aagatatttg gctataagtc       360
     aaaaaggaag gggggggtca cataggtccc actggcctca gacccacctc ttgtcctctc       420
     tctagatctc aaagcttaaa gagacagatc ttatgtggca agaaatgttg gctatagttg       480
     ttttcctact tcttctggtt ataatacttc tgttcttcca atactacagc cccccaggcc       540
     atgaatatct ctgtctgtgc tgggtttaat atttctgctt aaaccttgtt aattgcctcc       600
     agaatgggaa actcttcttc ctggccccgt agagattaca gccctctcca atgtatgttg       660
     cagaatttct ctctgggttc tcagaggatt acggagtcca ccttaagaaa ggcaaactcc       720
     agacactctg tgaagtagaa tggccacagt ttggaactgg gtggcaccag aagggtcatt       780
     aaacctcaca actgttcagg ctgtgtggcg ggtcatggct ggaactcccg gacaccctga       840
     tcagtttcct tacattgatc aatggctaga tttggtccag agccctcctc catggctccg       900
     ctcacgtgcc attcatgatc ccacctccaa ggtccttttg agctggacca cacttttgcc       960
     ccaaccctca cgtcggctcc tcctgtacag tctccttctg aagaagagga aagttctctt      1020
     cacccatttc tgcctcccta taacctcctg cccacccccc ccccccgccc cagaatattt      1080
     ccttgtctcc tcgactacat cccctgtggc ctctccacct atagccaccc aattacggca      1140
     tcggctggag aggtggccct ccttctccca ctgacagagg cccaaatcct ctgggcaatg      1200
     aggctctgct ccatttttag tttatgtccc cttctctgtt tctgacctgt acaactggaa      1260
     ggctcataat cccccccttt tctgaaaagc cccaggtctt gacctcactg atggagtccg      1320
     tgctccggaa tcaccggccc acctgggatg actgtcagca acttctttta acccttttca      1380
     cctctgaaga gagggaccat atccgaagaa aggtcagaaa gtatttcctc acatcagctg      1440
     gtagaccaga ggaggaagcc cgggacctcc ttgaggagac ttttccctct acctggcctg      1500
     attgggatac aaaatcctcg ggtgggaaga gagctttgga taattttcac tggtatgtcc      1560
     ttgtgggtat caagggagcc actcaaaaac ccatgaatct gtccaagaca actgaagctg      1620
     tccaggggcc taatgagtca ccaggagtgt ttctagaacg cctcctggag gcctatcaga      1680
     tttacacccc ttttgacccg gaggctcccg agaatagccg tgctattaat ttggcatttg      1740
     tgactcaggt agcccctgat attataagaa aattacaaaa gctggaagga tttgctggaa      1800
     tgaacagcag ccaacttttc aaatagccca gaaagttttt gacaattgag agtttgaaag      1860
     gcaaaaacag gtagctcagg cagctgaaaa ggctgctgac aaagcatcaa aaagacaggc      1920
     aaagatctta gtggctgcca tccaaggaag caagaaggca gggcccccat cacagagcac      1980
     cagccagggg accccaggtc cccaccagaa aggccaaaaa ggtgagcagg ctcccctaca      2040
     aagaaaccaa tgtgcttatt gcaaacaaat tggacacagg aaaaaagaat gctcattaaa      2100
     accagaggaa aaacaagaga agaaaaaggt cctcaccctc cctgctgtgg atgaatctga      2160
     agattgacag ggccggggct gccacttcct tcacccccag gagcccttgg tgactgccac      2220
     agtgggggcc cagcctgtat gcttcctaat cgacactggg gcggaagact tggtactgca      2280
     aacacccttg ggcagtgtct ctaataaaaa ggtggctgtg caagggactt cataagcttc      2340
     ataagctgca ggcatccatc tccttctcag cccaataagc tcacctcaca ttaggggacc      2400
     caacaccctc taccacccag ctcctgctaa ccaccccttt gtcagaggaa tatctcttag      2460
     tttcaccctc acaaccgctg gagaataaaa ctaatcctct cctactggat ttacagactc      2520
     tctttcctca agtctgggcc aagtcaaacc cccccaggac tggcaaagca ccatctgcca      2580
     gtagttgtag aactcctggc cactgccctg ccagtccagg taaaacaata tcctatgagt      2640
     cagtgggcta gagagggaat caatccccat attcagtctg cctggaatac tccatttttg      2700
     ctggtccaga aacctggaac aaatgattac cggcctgtac aggacttgca ggaagttaac      2760
     aagtggacag tcactgtcca tccaactgtc cctaaccctt atattttact cggcctgctt      2820
     ccaccagaac atacagcata cactgttctt gacttaaagg atgctttctt tgctattcct      2880
     ctggccccta aaagccaacc tatatttgct tctgaatgga tggaccctgg ctcaggagac      2940
     accactcaat taacctggac ttggttaccc cagggtttaa aaaattcccc cacccttttt      3000
     ggggaagccc tccaacaaga tcttataccg ttctgagcca gtcaccctaa ctgcacgctt      3060
     ctccagtaca tagacgacct gtttttggct actgaaacca ctgacagctg cctgcaacat      3120
     actagggacc tactttacct ccttcaggaa ctcgggtatt gggtctcagc caagaaggcc      3180
     cagctttgtc ttcccagact tttctaccta ggatacaaga taaacaaggg agaaagggca      3240
     cttgccactg ctcgaaagga agccatcctg caaatcccca ctcccaccac taggagatgg      3300
     gtacatgaat tcttaggggc tgtgggatac tgtcgtttat ggatattggg gttcgcagaa      3360
     atcaccaagc ccctgtacac cactaccaga gggaatggcc cacatgtttg gactgacaaa      3420
     gaacaggctt ttcaaaatct aaagaaggca ttaactgagg tccctgctct tgccctccca      3480
     aatatctcag aaccatttca tctttttgtt catgaaagcc agggagtcac taaaggggta      3540
     ctcactcaaa ctttaggacc atggtgatgc ccggtggcct atttgtctaa gatactggac      3600
     cctgtggctc cgggtgacca agttgtctgt gagccatagc ggcaaaagca agcctggtcc      3660
     aggaggctga taaactgact ctgggccaga atttaaccct tatggctcct catgccatag      3720
     agactttgct acaaaggcgc tctggcaaat ggatgtcgaa tgctcacatc ctgcagtatc      3780
     agagtttact gttagatcag ccttggttaa ctttctctcc cacaaggtgt ttaaatccag      3840
     ctacctttct ccctgatcca gaccttacca cacctgtcca tgactgccaa gaactgttag      3900
     agactacata aactggccga cctgatctcc aagatgtgcc tctaaaggag gtggactcca      3960
     ctctgtttac tgacagcagc agcttccttg aacagggagt aggaaaggct ggtgcagccg      4020
     ttactatgga gacagatgta ctgtgggccc aggcactgcc ggcaggtacc tcagcacaga      4080
     aggctgaatt ggtcaccttc actcaggctc tctgatgggg taaggacaaa cgtattaaca      4140
     tctacactga cagcaggtat gtttttccta ctgtacatgt acacaaagcc atctatcaag      4200
     agtgagggct actcaccagg aaagactatt aaaaacaaag aagaaatttt ggccctgctt      4260
     gaagctgttt ggcttcctcc gcaggtggct gtaattcact gcaaatgtca tcaaacagaa      4320
     ggcatggcta ttgcctgtgg taaccaaaaa gcaggctctg cagctcgaga ggcagcttgg      4380
     ctcccagtca cgcctttgac cctgctgccc actgtgtcct ttccgcaacc tgacctacca      4440
     gaccacccac aatactcccc agaggaagaa aaacaagctt cagatctttg ggccagtaaa      4500
     tatcaggaag gtttggtgga ttcttcctga ttccagaatc tttattgccc caagtcccct      4560
     gggaaacttt aatcaatcat ctgcattctg ccacccattt gggaggaata aaactggccc      4620
     agcttcttag gagccatttc aacatccccc accttcagga cttaactaac caagcagctc      4680
     tctggtgtat ggattgtgct caggtaaaca ccaaacaagg tcctaagccc agctcagtcc      4740
     accctccagg gaggctctcc ccgagaaagg tgggaagttg actttacaga aataaaacca      4800
     cactgggcag ggtataaata cctcctagtg ctaatagaca ccttttcggg atggactaag      4860
     gcatttacca ctggaaacga aactgccacc atggtagtta ggcttttact cattaaaatc      4920
     atctctcaac atgggctgcc tgttgccata gggtctgata atggaccagc cttcacctcg      4980
     tccatggctc agtcagtcag caaggcatta aacattaaat ggaaactcca ttgcacctat      5040
     tgaccccaga gctctggaca ggtagaacgc atgaaccaca caataaaaag tactcttact      5100
     aagttaatcc tagagaccag tgagaattgg gtaaagctcc ttcctttagc ccttcttaga      5160
     gtaagataca ccacttactg ggctgggttt tcaccttttg aaatcatgta tggaagggct      5220
     cctctatctt gcctaagcta agggatacca atttagcaga aatctcacaa gctaatttgt      5280
     tcagtacctg cagtctctcc aacaggtatg agacaccatc cagccacttg tccagggagc      5340
     acactccaat ccagttcctg accagactgg ccctgccact ttttccagcc aggtgactta      5400
     gtataggtta aaaagttcca gaaggaagga ttcactcctg cctgaaaagg acctcatact      5460
     gtcatcctca ccacgccgat ggctctgaaa gtggatggca ttccttcttg gattcatcac      5520
     tgtcacatca aaaaggcgaa caaagcccag caagaaacat ggatccccaa gcctgggcca      5580
     tgccccttaa aactgcgcat aagtcaagtg aagccatcgg attaatcatt tttatttacc      5640
     tcttttgttt gtttccgcct attacgccct ctgcccctct ctactctttt ctcctcactt      5700
     ctttcacgac agtatgtgtg tttgcaaaca ccacctggaa ggcaggaacc tccaaggaag      5760
     tctcttttgc agtcgattta tgtgctttgt tcccagagcc tgcccaaacc catgaaaaac      5820
     aacccaacct gccggttatg ggagcaggaa atgtcaacct cgctgcaggg tccagacaca      5880
     caggaagccg gactagatgt ggaagctcta aaggtgcaga aaaaggactc cagagcgttg      5940
     acttttacct ctgtcctgga aatcaccctg actctagttg tctagattct tatcagtttt      6000
     tctgccctca ctggtcatgt gtaaccctgg ccacataccc tggaggattg acctggtcct      6060
     caacacttt                                                              6069
//
ID   GOLEM       repbase; DNA   ; ROD   ; 2986 BP.
XX
AC   .
XX
DT   13-JAN-1998 (Rel. 6.4, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 4)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   TIRs; DNA transposon; MER7; 35S; MER17; MER29; MER7B; TA target;
KW   GOLEM.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2724
RA   Drinkwater D.R., Burgoyne A.L., Skinner D.J.;
RT   "Two human repetitive DNA elements: A new interspersed repeat
RT   found in the factor IX gene, and a satellite 11 tandem repeat
RT   sequence.";
RL   Nucleic Acids Res 14, 9541-9541 (1986).
XX
RN   [2]
RP   1-2724
RA   Kaplan J.D., Duncan H.C.;
RT   "Novel short interspersed repeat in human DNA.";
RL   Nucleic Acids Res 18, 192-192 (1990).
XX
RN   [3]
RP   2713-2608
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [4]
RP   2327-2128
RA   Skalnik G.D., Strauss C.E., Orkin H.S.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem 266, 16736-16744 (1991).
XX
RN   [5]
RP   2787-2607
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328 (1993).
XX
RN   [6]
RP   2327-2128
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [7]
RP   1-2128
RA   Smit F.A., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [8]
RP   1-2986
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?.";
RL   Direct Submission to Repbase Update..
XX
CC   [8] (Consensus)
XX
CC   23 bp terminal inverted repeats and TA target site [7].
CC   GOLEM's non-autonomous elements are GOLEM_A (MER7A) and GOLEM_B
CC   (MER7B) repeats.
CC   Orientation of the repeat has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [8].
XX
SQ   Sequence 2986 BP; 946 A; 566 C; 643 G; 805 T; 26 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagtatg ccgtgttaga       360
     ccggcagcag ccacatgcat ctcgtgttta ccgcgtctct tgattgcatc attttctctt       420
     gtgcttgatt taatctcatg tgttttgttc atcacggctc ctaagcgttc aaaatccacg       480
     gctaatgttg ccagtaagag gccacgtcga gtaattgagc tggaaacaaa attaaaagtg       540
     attaaggacc gccgaaggtg gaaaatcagt gatggttatt gctcgccaga caggtatgtc       600
     ccattcgacc atagctgcca ccttgaagaa caagagcaaa gtgacagaaa ctgttaaagg       660
     gtctgcttca tcgaaggcga cgagaccaac aaatttgaga agtgccaaca tcagatatgg       720
     agaatatctg ctaatgacct ggattgaaaa ccagacacag aaacatagct ctctcagcac       780
     cacgacgacc acggccagag caaaagggat atttttgatg ttgaaagaaa aggctggacc       840
     cgactgtgat atcgaattta ctgctagttc cgggtggttt aaatgattcg agaatcgtta       900
     tccattacat aatgttaacg tgactgctga gtctgtgagg gctgacgtga aggcagctga       960
     agagtttttg gaaactctag atgagtcgtg gagaagaaat acttgccaga gcaaatcttc      1020
     aatatggagg aaacctccct attctggaaa cagatgcctg aaaggacttt ctgtcataag      1080
     ggggccaagt caatgccagg tttcaagggt tttaaggaca ggaaacggtc ttgctttggg      1140
     gcaatgttgc aggctacaaa ttgaagccct ttgtgatccg acacagtgaa aaccccaggg      1200
     ccttcaagca tatcagtaag cacacgctgc cagtgtacta caggagcaat aaaaagtcat      1260
     ggatgatcca tctcctcttc caagatgccc tcctgaattg ctatgccaga gaaatggaga      1320
     agtactgttt ggggaataac atacctttca agattttgct tattgttgat aatgctcctg      1380
     cacatcttcc ttttactggt gatcttcatc ccaatttcaa agtggtgttt ctctctccaa      1440
     acaccacctc tttgatccaa tggatcaagg aattatagca gctttttaaa ggcctactac      1500
     cagagaaggg ccttcgccca ggttatcact gtaactgagg aagacactga tgcaattctg      1560
     gaaggattac aacagccaag actgcatcaa gaaccttgct tgggattggg gtgatgtcac      1620
     caaggagtgt atgaatggca tctggaagaa gacactcaag aggtttgtcc atgacttcaa      1680
     aggatttgcc aaggatgagg aggttgcaaa aatcaacaag gctgtggttg agatggcaaa      1740
     caactttaac ctgggtgtgg atgaggatga cattgaggag ctcctagagg tggttcctga      1800
     ggaattgact aatgaggagt tgttggaact ggaacaggaa tgcatagctg aagaagaggc      1860
     aagagaaaag gaaactgcag gagaagaaga agaaccccca agaaaattca cagtaaaggg      1920
     tttagcagaa gcttttgcag acctcaacaa gctccttaaa aagtttgaaa acatggaccc      1980
     caacaccgaa aggttttcat taatagagag gaatgttcat ggtgcattat ctgcttacaa      2040
     gcaaatctat gatgacaaaa agaaacaaac caagcaaacc atcatggaca tatatttctg      2100
     aaaagagtga cacctcctca agaagagcct caggcaggtc cttcaggaga tattccagaa      2160
     gaargcatcg ttatcatagg agatgacagc tccatgcatg ttattgcccc tgaagacctt      2220
     ccagtgggac aaaatgtgga ggcggaagac agtgatattr atgatcctga ccctgtgtag      2280
     gcctaggcta atgtgtgtgt ttgtgtctta gtttttaaca aaaatntttt aaaaaataaa      2340
     aaaatwaaaa atttwwaaat agaaaaaagc ttatagaata aggatataaa gaaagaaaat      2400
     atttttgtac agctgtacaa tgtgtttgtg ttttaagcta agtgttatta caaaagagtc      2460
     aaaagttaaa aatgcaaaag tttataaagt aaaaaagtta cagtaagcta tggttaattt      2520
     attgctgaaa aarwwwwwww wwwwwwataa awttagtata gcctaagtgt acagtgttta      2580
     taaagtctac agtagtgtac agtaatgtcc taggccttca cattcactca ccactcactc      2640
     actgactcac ccagagcaac ttccagtcct gcaagctcca ttcatggtaa gtgcyctata      2700
     caggtgtacc attttttatc ttttataccg tatttttact gtaccttttc tatgtttaga      2760
     tacacaaata cttaccattg tgttacaatt gcctacagta ttcagtacag taacatgctg      2820
     tacaggtttg tagcctagga gcaataggct ataccayata gcctaggtgt gtagtaggct      2880
     ataccatcta ggtttgtgta agtacactct atgatgttcg cacaacgaaa ttgcctaatg      2940
     acgcatttct cagaacgtat ccccgtcgtt aagcgacgca tgactg                     2986
//
ID   L1M3DE_5    repbase; DNA   ; ROD   ; 600 BP.
XX
AC   .
XX
DT   09-JUN-1999 (Rel. 7, Created)
DT   09-JUN-1999 (Rel. 7, Last updated, Version 1)
XX
DE   L1M3DE_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L1M3D_5; L1M3DE_5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-600
RA   Jurka J.;
RT   "L1M3DE_5.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
CC   [1] (Consensus)
XX
CC   Partially and distantly similar to L1M3D_5.
CC   ~74% similar to individual repeats.
XX
SQ   Sequence 600 BP; 163 A; 165 C; 132 G; 134 T; 6 other;
     gcacactttt ccagcwgctg cctgagggtc tggcttctaa ctagcctgca tctgggagct        60
     gatagggcag ataaacaata gacctccagg agcctgaaca ggaggttggc acttcccatg       120
     ccttctcccc agctcactcc agtgataaat ccaggtctac agattctccc tggaaggagt       180
     ttgtccacac atcaagcgcc ccaactttta tagcttccac ccaagggact ggctcctaaa       240
     tcacctagct ctgggagttg atggggcttt gcatttatga gtctccctag accacagaga       300
     acaaagaggt ggttttaaaa caggcacact tccagcagct atctccccag gatcagaggg       360
     tgcagcctga acatgagtac aggnatttgc cacagatcct ctccctggct tagtgcagag       420
     agagtgggag ataaacaccc atgctcagct tcaccstgaa gatagaagaa actggaacat       480
     acatccaaca ccctaacctt tccagctaca tctagagagt ctggtttcta ccttacctgt       540
     ctyagagtac tracaggata tggcacatcc taatctccag ggggccacca aaaacanaga       600
//
ID   MER97       repbase; DNA   ; ROD   ; 1106 BP.
XX
AC   .
XX
DT   29-JUN-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   MER97 repetitive element - a consensus.
XX
KW   mariner/Tc1 superfamily; Non-autonomous DNA transposon fossil;
KW   MER97.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1106
RA   Jurka J., Kapitonov V.V.;
RT   "MER97.";
RL   Direct Submission to Repbase Update (JUN-1998).
XX
CC   [1] (Consensus)
XX
CC   Putative non-autonomous DNA transposon fossil related to the
CC   mariner/Tc1 superfamily. TA target site duplication.
CC   Perfect 24 bp terminal inverted repeats.
CC   Average identity of individual copies to the consensus is 80%.
CC   MER97 portion (positions 500-800) is about 60% identical to
CC   TIGGER2 (positions 1959-2155) and TIGGER5 (positions 1544-1820).
CC   Analogously to the RICKSHA mobile element, MER97 is a putative
CC   composite element since it carries a region (positions 804-993)
CC   70% identical to the internal part of LTR-retroelement
CC   HARLEQUIN (positions 2409-2580, reverse orientation).
XX
SQ   Sequence 1106 BP; 368 A; 196 C; 220 G; 322 T; 0 other;
     caggcagtcc tcgctttgca cggttccgat atgcatgaat ttcagttacc acggtttagt        60
     taaataacac cagtccccca acaacacggt tcaaatttca gttaccacgg tatattaact       120
     gtgagtaatt gcataaagta caaacttcgc tgctagctct tcagtccaca aatcactaca       180
     taaataacag atgcgcatca tgatcagtga ccaatcacat cacttctttc aaagtctgtc       240
     ggtgattggt cactgtgcat ctgttattca gttcatgcac agacagcaaa gcgtgtagtt       300
     gtgttgcctc cttgtctccc agtgataaac ccacgtgaca ttttacaaaa atggataatc       360
     gaaagaggga attggccaac aaagatgaaa gtgcagcaaa gaaacgaaaa gtgataatgc       420
     tggaagtgaa attcgaatca aacgtaaatg gagttataga agaaatagct gaccgtggga       480
     atgttgacac tgccgccatt tgagagactc tagatatgca gccagaggaa cttagtgaag       540
     gcgaacttat cgacataaat gaggaaagtg gttgtgacga aaaggatgaa gatgtcccag       600
     aggaagtgac gccagcaaaa aacttcacat taaaggaact cttggagata tttcacgaca       660
     ttgaaagcgc aaaggataaa atgttggaag ctgatccaaa cttagaaagg agtatgacaa       720
     tttgccaagg catagaaaag atgcttactc cgtatcgtaa gttatataaa gaagaagaag       780
     gcaagcactg ttcaaactac tcttgataag ttttttttgg tttgttttga taagtttttt       840
     tacaaagaaa taaaacactt taattctcaa tgtttctaat gttttaaatt atagtgtact       900
     aaataaatat tagttttatt atttttttca ttccctatac atttataacc gacggtaaga       960
     gagtttttaa tgtttttgac aaaaattttt aaaggtcacg gaacaattat aattttccca      1020
     ttgattatta agatcgcttt gcatggtttc agcttgcatg gtcattttta cggtcccgta      1080
     ctaccgtgca aagcgaggac tgcctg                                           1106
//
ID   MLT1J       repbase; DNA   ; ROD   ; 516 BP.
XX
AC   .
XX
DT   14-MAY-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Transposon-like element long terminal repeat (MLT1j subfamily) -
DE   a consensus.
XX
KW   MaLR family; Long terminal repeat of retrovirus-like element;
KW   MLT1J.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-516
RA   Jurka J.;
RT   "MLT1J.";
RL   Direct Submission to Repbase Update (05-MAY-1998).
XX
CC   [1] (Consensus)
XX
CC   3'-similar to MLT1I and possibly to MLT1H around positions
CC   89-201.
XX
SQ   Sequence 516 BP; 130 A; 128 C; 116 G; 139 T; 3 other;
     tgtggcagag actgctagtt gtcccccaat atccattctc cccttcttcc ttagtaatag        60
     aamccccaat ttttagctgg gcacatggcc acccagaaat aaagactaca tttcccagcc       120
     tcccttgcag ctaggtgtgg ccatgtgact ttctaagttc tggccaatga gatggtaagc       180
     agaagtgatg tgtgcaactt ctaggaaatg tccttaaaga gaggggcayg cccttctttt       240
     ccccttcctc cttcctgctg cctggaatgt agatgtgatg gctggagctc tagcagccat       300
     cttggaccat gaggtgaaag ccacatgcta aggatggcag agcagcaaga tagaaggagc       360
     ctgggtccct gagactatgg agcagagctg ccataccagc cctggactgc ctacctctag       420
     acttctatat gagagagaaa taaattctat cttgtttaag ccactgttat tttgggtttt       480
     ctgttacttg cagctaaacc taatcctaac ayacca                                 516
//
ID   AFROSINE    repbase; DNA   ; ROD   ; 160 BP.
XX
AC   .
XX
DT   19-DEC-2003 (Rel. 8.11, Created)
DT   19-DEC-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   SINE elements from African endemic mammals - a consensus
DE   sequence.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; AFROSINE.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Nikaido M., Nishihara H., Hukumoto Y., Okada N.;
RT   "Ancient SINEs from African Endemic Mammals.";
RL   Mol. Biol. Evol 20(4), 522-527 (2003).
XX
RN   [2]
RA   Nikaido M., Nishihara H., Hukumoto Y., Okada N.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (08-NOV-2002)Masato Nikaido, Tokyo
RL   Institute of Technology, Graduated school of Bioscience of
RL   Biotechnology; 4259 Nagatsuta-cho Midori-ku, Yokohama, Kanagawa
RL   2268501, Japan (E-mail:mnikaido@bio.titech.ac.jp,
RL   Tel:81459245742, Fax:81459245835).
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "AFROSINE consensus.";
RL   Direct Submission to Repbase Update (DEC-2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 92%.
XX
SQ   Sequence 160 BP; 41 A; 38 C; 42 G; 38 T; 1 other;
     tgctaaccaa aaggtcggca gttcgaaacc accagctgct ccaygggaga aagatgtggc        60
     agtctgcttc cgtaaagatt tacagccttg gaaaccctat ggggcagttc tactctgtcc       120
     tatagggtca ctatgagtcg gaattgactc catggcagtg                             160
//
ID   LINE2       repbase; DNA   ; ROD   ; 3314 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 6, Created)
DT   24-JUL-2000 (Rel. 7.3, Last updated, Version 4)
XX
DE   MIR2/LINE2 non-LTR retrotransposon - a consensus.
XX
KW   Non-LTR retrotransposon; LINE; L2 family; MIR2; MIR2/LINE2;
KW   LINE2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-3314
RA   Degen J.S., Davie W.E.;
RT   "Nucleotide sequence of the gene for human prothrombin.";
RL   Biochemistry 26, 6165-6177 (1987).
XX
RN   [2]
RP   1-3314
RA   Smit F.A., Riggs D.A.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation.";
RL   Nucl. Acids. Res 23, 98-102 (1995).
XX
RN   [3]
RP   1-3314
RA   Smit F.A.;
RT   "LINE2.";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [4]
RP   1-3314
RA   Smit F.A.;
RT   "LINE2.";
RL   Direct Submission to Repbase Update (1999).
XX
CC   [4] (Consensus)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
CC   This is a consensus sequence for LINE2 subfamily A. The MIR SINE
CC   shares the 3' terminal 50 bp and was co-amplified with LINE2. The
CC   5'
CC   end is probably still incomplete. The ORF from bp 189-2691
CC   encodes a
CC   product 59% similar (39% identical) to the
CC   reverse-transriptase-like
CC   protein of a LINE-like element in pufferfish (GenBank acc#
CC   AAD19348).
CC   Note that, whereas L1 is A- and purine rich in the coding strand,
CC   L2
CC   is C- and pyrimidine (65%) rich.
CC   There may be more than 300,000 copies of LINE2 in our genome.
CC   LINE2
CC   spread before the mammalian radiation, and copies are only 65-75%
CC   similar to this consensus sequence.
XX
SQ   Sequence 3314 BP; 706 A; 1249 C; 420 G; 915 T; 24 other;
     ccctccgcaa gagtaaagag ggagccccaa aactcacccc tcccnnaccc ctcagcactc        60
     acagcctctc caccactatc tgccttgaga ccaccgggac taatctcatc atgcccttta       120
     tccctgttta tgtcagtcac cacaagaagc ccaagactcc caggtcatcc ctcacccccc       180
     acgcttgaat ccccatnagg ctctgtacat ctccttttct gaccccatct cccatccctc       240
     cccanctcct gaaacccttc cactgngccc tctggaactc acggtcmatc atcagcaaaa       300
     tcccccgtat cctcaacctc ttctctgaac gttcccttca ccttcttgct ctaacngaaa       360
     cctggctctc ccctgaggac actgcttccc ctgcagcctt ctcaagtggt ggccgttttc       420
     tctcccacan ccctcgtacc actgggcctg gaggtggggt aggtgtcctc cttgctcctc       480
     attgctgctt ccagaccatt ctccctccct cctccctaaa acaccccagc tttgaatctc       540
     atgtcatcag actacatcac ccgctacccc tccttgttgc agtcatctac ngacctccgg       600
     gtcactcccc ctcattcctt gaagatttta gctcctggct cactgtcact ctctccaaca       660
     ctactcctgt cntaattctt ggtgatttca atatccacat agatgatcct tccaataccc       720
     tggcctctca gttccttgac ctcctctcct ccaatgatct tgtcctccac cctacctcag       780
     ccactcactc ccatggtcat accctagacc ttgtcattac caataactgc aacccctcca       840
     taatctcaat ttcaagcatc ccactctctg accaccacct cctatctttc cagctcactc       900
     cctctagtac cctaactcca acaattcttc gaccccaccg ggacctccaa tccattgatc       960
     ctaccacctt ttcactgtcc ctcacccccc tnatgtcctc acttccctcc ttacccagct      1020
     taaattccat ggtcaatcat tataatcact cccttgcata taccctcaac tcccttgccc      1080
     ctctctcgct tcgtcntact cgcctggcaa aaccacaacc ctggttaaat ccaactctcc      1140
     gcctactccg cgcctgcacc cgtgcagctg aacgtggctg gagaaaaaca cacaaccatg      1200
     ctgactggtc tcgctttaaa ttcatgacca cgaacctcaa gtgggccctt aatgctgccc      1260
     ggcaatcata ctacatttcc ctagtccatt cactctccca ctctcctaga tnactatttc      1320
     acaccttctc ctctctcctc aaacctccaa cacctcctcc cctatcctca ctctcagctg      1380
     atgaccttgc ttcctatttc actgagaaaa twgaagcaat cagaagagaa cttccacana      1440
     ctcccaccac cacatctacc cacctacctg catctgtgcc cacatactct gccttccttc      1500
     ctgttactac ggatgaactg tccgtgctcc tatctaaggc caacccctcc acttgtgcac      1560
     tagatcccat cccctctcgc ctactcaagg acatcgctcc agcaattctc ccctctctct      1620
     cctgcatcat caatttttcc ctctctactg gatcattccc atcagcatac aaacatgctg      1680
     ttatttctcc catctttaaa aaacaaaaat tctcccttga ccccacttcc ccctccagct      1740
     accgccccat ttctctgctc ccctttacag caaaactcct caaaagagtt gtctatactc      1800
     gctgtctcca attcctctcc tcccattctc tcttaaaccc actccaatca ggctttcgtc      1860
     cccaccactc caccgaaact gctcttgtca aggtcaccaa tgacctccat gttgctaaat      1920
     ccaatggtca attctcagtc ctcatcttac ttgacctatc agcagcattt gacacagttg      1980
     atcactccct ccttcttgaa acactttctt cacttggctt ccaggacacc acactctctt      2040
     ggttttcctc ctacctcact ggccgctcct tctcagtctc ctttgctggt tcctcctcat      2100
     ctccccgacc tctnaacgtt ggagtgcccc agggctcagt ccttggacct cttctcttct      2160
     ctatctacac tcactccctt ggtgatctca tccagtctca tggctttaaa taccatctat      2220
     atgctgatga ctcccaaatt tatatctcca gcccagacct ctcccctgaa ctccagactc      2280
     gtatatccaa ctgcctactc gacatctcca cttggatgtc taataggcat ctcaaactta      2340
     acatgtccaa aactgaactc ctgatcttcc ccctcaaacc tgctcctccc acagtcttcc      2400
     ccatctcagt taatggcaac tccatccttc cagttgctca ggccaaaaac cttggagtca      2460
     tccttgactc ctctctttct ctcacacccc acatccaatc catcagcaaa tcctgttggc      2520
     tctaccttca aaatatatcc agaatccgac cacttctcac cacctccact gccaccaccc      2580
     tggtccaagc caccatcatc tctcgcctgg attactgcaa tagcctccta actggtctcc      2640
     ctgcttccac ccttgccccc ctncagtcta ttctcaacac agcagccaga gtgatccttt      2700
     taaaacataa gtcagatcat gtcactcctc tgctcaaaac cctccagtgg cttcccatct      2760
     cactcagagt aaaagccaaa gtccttacag tggcctacaa ggccctacat gatctggtcc      2820
     cccgttacct ctctgacctc atctcctacc actctccccc tcgctcactc cgctccagcc      2880
     acactggcct ccttgctgtt cctcgaacac gccaggcacg ctcctgcctc agggcctttg      2940
     cacttgctgt tccctctgcc tggaacgctc ttcccccaga tatccacgtg gctsgctccy      3000
     tcacctcmtt caggtctcwg ctcaaatgtc acctcctcag agaggccttc cctgaccacc      3060
     ctatctaaaa twgcacaccc tctcccccat catgcccatc tttcttaccc cgctttattt      3120
     ttcttcatag cacttatcac catctgacat actatatwat ttatttgttt gtttgtttat      3180
     tgtctcctcc actagaatgt aagctccatg agggcaggga ctttgtctgt tttgttcact      3240
     gctgtatccc cagcgcctag macagtgcct ggcacatagt aggcgctcaa taaatatttg      3300
     ttgaatgaat gaat                                                        3314
//
ID   HERVL       repbase; DNA   ; ROD   ; 5669 BP.
XX
AC   X89211;
XX
DT   19-FEB-1997 (Rel. 5, Created)
DT   19-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   Internal part of endogenous retroviral element HERV-L.
XX
KW   Internal part of endogenous retrovirus HERV-L; HERVL.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-5669
RA   Cordonnier A., Casella F.J., Heidmann T.;
RT   "Isolation of novel human endogenous retrovirus-like elements
RT   with foamy virus-related pol sequence.";
RL   J. Virol 69(9), 5890-5897 (1995).
XX
RN   [2]
RP   1-5669
RA   Heidmann T.;
RT   "Direct Submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (26-JUN-1995). T.
RL   Heidmann, Inst. Gustave Roussy CNRS URA 147, 39 Rue Camille
RL   Desmoulins, F- 94805 Villejuif, FRANCE.
XX
DR   GenBank; X89211; Positions     463    6131.
XX
CC   LTR's of HERV-L are listed in REPBASE as MLT2 sequences.
CC   HERV-L has a potential leucine tRNA primer-binding site.
CC   The HERV-L internal sequence shows some amino acid similarities
CC   to
CC   retroviral reverse transcriptase and integrase proteins. In
CC   addition,
CC   a region homologous to dUTPase proteins was unexpectedly found
CC   downstream from the integrase domain. The amino acid sequence and
CC   phylogenetic analysis indicate that the HERV-L pol gene is
CC   related to
CC   that of foamy retroviruses. HERV-L-related sequences are detected
CC   in
CC   several mammalian species. In primate and mouse genomes 100 to
CC   200
CC   copies may be present.
XX
SQ   Sequence 5669 BP; 1631 A; 1188 C; 1309 G; 1541 T; 0 other;
     aattttggta ccaggagtga ttctagagga acagaatatt aaggattgag ttatttcgtt        60
     ggtttagggg tttctagatt tggctgctta gtatgattag acccaaaaat gctgaagact       120
     ctacttctaa tagtatgggg aaacactgat agtccttggt gtgaactgtt tagagaatta       180
     tgcaaaataa atgcatgtgg cacttttgat tctctgttca tgaaaggcaa gatgtttagt       240
     gactctgtgt gtaatacctt tgactatatg tggagaacca tgaataaagt tggttgtttg       300
     ctcataagtt cactggacaa agtgatgaaa gaaaatgatg aactcaggga ttctaactcc       360
     cagcttcaga agcagataca gagcctcaaa tcttcgaaga ttgccctgag cgaaagtcct       420
     atctcctgta gaaaaaagag ctgaaattgt ggaaaaacag acacaagctc ttataatgca       480
     agtggctgac ctacaatgaa aggtgcttgc acagcctcgc caggtgtcta ctgttgaagt       540
     gagggaattc attgggaaag aatgagaccc tgaaacttgg aatggggaca tgtgggagaa       600
     cctgatgaag ctggggacac tgagcatgta aactctgatg aacctttttt tttccagaag       660
     aaacagcttc cgtatctcct gtagtggcaa catttccttc ctgacctatg ttgccatcag       720
     tctttccacc tttgtctgag gacataaacc ctgagctatc tgtggctaca gtgagggact       780
     cccctgaggc tgttgccagg caatataatg ttgattctcc tcaggaccca ctctcaacac       840
     ccctgtttgc ttttagacct atacctagac taaagtcctc ctgggcccct agaagtgaga       900
     ttcacagtgt gacccatgag gatttacact acacttggaa agaacccttg agttttctaa       960
     tttatatgag cagaaatctg gagaacaggc atgggaatgg atattaaggg tgtgggataa      1020
     tggtagaaga aacatagaat tggatcaagc tgaatttatt gacttgggcc cactaagtag      1080
     ggattatgca tttaatgtta cagctcagag agttaaaaaa ggttctaata gtttatttgc      1140
     ttgattagtt gaaatatgga ttaaaagatg gcccactgtg tgcaagctgg aaatgccaga      1200
     tctcccttgg tttaatgtag aggaagggat ccaaaggctt agagagattg ggatgttgga      1260
     gtggattagt cactttagac ttactcatcc cagctgagaa gttccaaaag ataaacccct      1320
     gaccaatgct tcgcaaaaca gatttgtgag ggcagcacct gcatctttga agagccccgt      1380
     aatcactctt ctctgtctgt cagatctaat catgggaact acagtcactc aactgcaaaa      1440
     tttaaataca atgggaataa ttggaccctg aggtgacagg ggccaagtgg ccacagtcaa      1500
     tcttcaaagg caaggtgggc atagctacca taatagacag cagaggcaaa gcagcaatca      1560
     gaatagtctg acttgtgtag agctctgaca ttagaaaatt aatcatggtg ttcctagaag      1620
     tgaaattgat aggaagccta cagcattcct acttaattta tataagcaga aaccttccag      1680
     gttgagtgga caaaatacta actcgaatta taaaaacaga gaatcatggc ccctcaatca      1740
     atttccagac tttagccaat tcacagaccc agaaactctt gaatgaaggg gaggccatgt      1800
     tcccttgagg aaggacccca ctacaccact gacaatttat gctgttaata tttctcccac      1860
     ccttacccaa ggagacctcc agccttttgc ctggttaact gtgcattggg gaaagggaaa      1920
     tgatcagaca tttcagagac tactgaacac tgcctctgag ctgatattca tttcagggta      1980
     ctcaaaatgt cactgtggtc ctccagttaa agtaggggct tatggaagtc aggtaattaa      2040
     tggagttatg gctcaggtct gacttacagc aggtccagtg ggtccctgga ctcatcctgt      2100
     gttcattttc ccagtgccag aatgcataat tggcattgtc atacttagag gctggcagaa      2160
     cccccacatt gattctgtga ctggtaaggt gagggctatt atggtgggaa aggccaaatg      2220
     gaagccattg gagctgcctt tacctaggaa aatagtaaat ccaaaaacat tatcaccacc      2280
     ctggagggat tgcagagatt agtgccacca tcaaggactt gaaaaatgca ggggtggtga      2340
     ttcccataac atccttgttc aactctcctt tttggcctgt gcagaagaca gatggatctt      2400
     ggagaatgag agtggattat cataagctta accaagtggt gactccaatt gcagctgcta      2460
     tacaagatgt ggtttcattg ctcaagcaaa ttaatacatc tcctggtacc ttgtatgcag      2520
     ccattgactt ggcaaatggc cttttaccca ttccataagc cccaccagaa gcaatttgcc      2580
     ttcagctggc aaggccagca atgtatcttt actgtcctac ttcaggggta tatcaactct      2640
     ccggctttgt gtcataatct tattcagagt gatcttgatc acttttcact gccacaagat      2700
     atcacactgg tccattacat tgatggcatt atgttgattg gatccaatga gcaagaagta      2760
     gcaaacacac tggacttatt ggtgagacat ttgcatgcca taggatggga aataaatcca      2820
     aataaaattc acgcaccctc tacctcagta aaatttctag ggtccagtgg tgtggggcct      2880
     gtcgagatat tcctttaaag ggaaggataa attgctgcat ttggcacctc ctacagccaa      2940
     gaaagagaca catcgcctag tggacctatt tggattttgg agacaacaca tttcttattt      3000
     gggtgtgcta ttccagccca tttatccagt gacacaaaag gctgccggtt ttgagtggag      3060
     tccagaacag aaggctctgc aacgggtcca ggctgctgtg caagctactc tgccacttgg      3120
     accacatgac ccagcagatc caacggtgct tgaggtttca gtggcagaca gtgatgctgt      3180
     ttggacctct ggcaggccct cacaggtaaa tcacagtgga ggcctctagg attttggagc      3240
     aaggccctgc catcttctgc agataactac tctcctgaga gacagcactt ttcctgttat      3300
     tgggctttgg tggaaactga gtgtttgact atgggtcatc aagtcactat gtgacctgaa      3360
     ctgcctgtca taaactgaat gctttaagac ccatctagtc ataaagtggg tcatgcacag      3420
     cagcattcaa tcatcaaatt gatgtagtat atatgtgatt gcgctcatgc aggtcctgaa      3480
     ggcacaagta agttacataa ggaagtgtct caaatgccca tggtctccac tcctgccacc      3540
     ctgccttctc tcccccagcc tgaactgagg gcctcatcgg gagttcccta tgatcagttg      3600
     acaagagtaa gagaagacta gggcctggtt cacagatggt tctgcacaat atgcaggcac      3660
     cacctgaaag tggacagcta cagcactatg gcccctttct aggacatccc tgaaggacag      3720
     tgatgaaggg aaatcgtccc agtaggcaga acttcgagca gtgaacctgg ctgtgcactt      3780
     tgcatggaag aagaaatggc cagatgtgcg attatatact gatccatagg ctgtagccaa      3840
     tggtttggct ggttgaacag ggacttggaa gaagcataat tggaaaattg gtgacaaaga      3900
     catttgggga agaggtatgt ggatggacct ctctgattgc tcaaagacta tgaagatatt      3960
     tgtatcccac gtgagtgctc accagcaggt ggtctcagca gaggaggatt ttaataatca      4020
     agtggatagg atgacctgtt ctgttgacac cattcagcct ctttccccag ccgctgctgt      4080
     cattgcctaa tgggctcagg aacaaagtgg ccacagttgc agggatggag gttactcatg      4140
     ggcccagcaa catggaattc actcaccaag gctgacctgg ctatggccac tgctgagtgc      4200
     ccaatttgcc agcagcagag accaacactg agacctcaat atggcaccat tcctcagggt      4260
     gatcagccag ctacctggtg gcaggttgat tatattggac ctcttccatc atggaaaagg      4320
     cagaggtttg tcctcactgg aatagacact tactttagat atgggcttgc ctattctgtg      4380
     tgcaatgctt ctgccaagac taccatccat ggactcaggg aatgccttat ccaccatcat      4440
     ggtattccac acagaattgc ctctaaccaa ggcactcaca ttatggctaa agaaatgtgg      4500
     cagtggactc atgctcatgg aattcactgg tcttaccatg ttccccatta tcttgaagca      4560
     actagattga tagaacggtg gaatggcctc ttgaagtcac aattacattg tcaactaggt      4620
     gacaatactt tgcagggctg gggcaaagtt ctccagaagg ccgtgtatgc tctgaatcag      4680
     catccaatat acggtactct ttctcccata gccaggattc atcaaggggt ggaagtggaa      4740
     gtggcaccac tcaccatcac ccctagagat ccactagcaa aatttttgtt tcctgttccc      4800
     ccgacattat gttctgctgg cctagaggtc ttagtcccag atggaggaat gcttgccacg      4860
     aggagacaca acaacgattc cattaaagtg gaagttaaga ttgccacctg gacactttgg      4920
     gctcctccta cctttaagtc aacaggctaa gaagggagtt acagtgttgg ctggggtgat      4980
     tgaccaagac tgtcaagaag aaatcaattt gctactccac aacggaggta aggaagagta      5040
     tgaatggaat ccaggagatc cattagtgca tctcttaata ttatcctgtg attatattac      5100
     tcttaatact gccctgtgat taaggtcaat gggaaattac agcccaattc aggcaggact      5160
     tcaaatggcc cagacccttc aaaaaattaa ggtttgggtc actccaccag gaaaaaacac      5220
     aaaaacaaaa aatgtgacct gctgagctgc ttgctgaagg caaatggaat acagaatggg      5280
     tagtagaaga agttagtcat caataccagc tatgatcacg tgaccagttg cagaaacaag      5340
     gactgtaatt atcatgagta tttcctcctt cttttgttaa catgtactaa gaaaatatct      5400
     tcgatttatt gtagttgcac caagaaaata tcttcggttt atttcatttt cctttactat      5460
     gtaacataag atttactgac ttcatatcag catttaagta ttgttacctt tatataatag      5520
     catttgggtt ggggattgat acatttccgg ttgtacaaag gatagttgta ttatattagg      5580
     catagttatg accttatgac tgtctttatt tgaagattat atatgatctc aggagatgtg      5640
     tacgggttca tgttgacaag gggtggact                                        5669
//
ID   L1MC3       repbase; DNA   ; ROD   ; 2487 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MC3) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC3 subfamily; MER42A;
KW   L1MC3.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1187-2487
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-2487
RA   Smit F.A.;
RT   "L1MC3.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [2] (Consensus)
XX
CC   Replaces MER42A.
XX
SQ   Sequence 2487 BP; 938 A; 407 C; 481 G; 600 T; 61 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgawacya ctatatacgt atannaraat      1200
     taaacaaata agtaaatgta tkgtagatga tgggagccag gtttctcact gtcggagtga      1260
     ggagttacag ataagcaaag ggaggagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccgctg agagggccta gaagcaacga caccccagta gcaatgagca cacctagcac      1440
     ccagatcttg gtttctaata ccattctcca ataaaaggaa ccagggctcc ttggagaaat      1500
     ggctgattct aggactaggg caggaaatat acaagatgag cctggaacat cttgcartgc      1560
     cagaaaataa ggaagtgctc aaaaacacaa tgatrggggt atgtcaaagg gacacagrag      1620
     ccaactgaaa gagctcccaa tggccaaagc tggaacaatt tgagcaacaa aataaattat      1680
     rgtagtattg gattataacy caaagtataa aataaatatc catgagtcca tactgatata      1740
     aatgaatgat taaataaata aataaattga gaagataaat aagtctctnn tgcagaagaa      1800
     tttcaaataa tttatgtaga tarcctnccc tcaaggaagt ggagcgtaac tccccactcc      1860
     ttaagtgtgg gatggatata gtgacttcct tccagaaagc atagtatagg acggaaaaaa      1920
     aagtaaattt acwgtagaga aacctgacaa acactacctt agccaggtaa tcaaagttag      1980
     catcaacaat tgtaagtcat gttgatagya tatacccttg atatgatgtg ataagaatgg      2040
     cacttcacct ccgtggtctt cctcccaaaa acccataacc ccagtctaat catragaaaa      2100
     atatcagaca aattccaact gagggacatt ctacaaaata cctgaccagt actcctcaaa      2160
     actgtcaagg tcatcaaaaa caaggaaagt ctgagaaact gtcacagcca agaggagcct      2220
     aaggagacat gacaactaaa tgtaatgtgg tatcctggat gggatcctgg aacagaaaaa      2280
     ggacattagg taaaaactaa ggaaatctga ataaagtatg gactttagtt aataataatg      2340
     tatcaatatt ggtttattag ttgtgacaaa tgtaccatan taatgtaaga tgttaayaat      2400
     aggggaaact ggatgtgggg tatatgggaa ctctctgtac tatttttgca actttcctgt      2460
     aaatctaaaa ctatttcaaa ataaaat                                          2487
//
ID   MER102      repbase; DNA   ; ROD   ; 332 BP.
XX
AC   .
XX
DT   30-JUL-1998 (Rel. 6.5, Created)
DT   30-JUL-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Interspersed repeat MER102 - a consensus.
XX
KW   Interspersed repeat; MER102.
XX
OS   Mammalia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi.
XX
RN   [1]
RP   1-332
RA   Jurka J., Naik A., Kapitonov V.V.;
RT   "MER102.";
RL   Direct Submission to Repbase Update (JUL-1998).
XX
CC   [1] (Consensus)
XX
CC   Over 3000 copies in the genome. Present in Sus scrofa.
CC   The extreme 3' end similar to MER58 - probably insignificant.
CC   Potential transposable element - not confirmed.
XX
SQ   Sequence 332 BP; 94 A; 65 C; 85 G; 86 T; 2 other;
     gggttgcaaa ctcaaatgcc tacaggggcc aggcaggtaa cataaatgag tgaagtgggc        60
     caggtgggga ctgtggcaaa ctggagagca catgccctgt ctaaaggggg cagcagctgc       120
     tactcagctc cagccaattg ttgccatgtg ggaatgtagg cccagtgttg ccagatcttc       180
     tgatttttca agagaagcca gaaatctaga tttttatgtg aaatctcctg atttttaaat       240
     gttggcaact aatttaaaat ttttawaaaa cactgtgtag gccaaacaaa acatatctgt       300
     gggccagatt tagcccatrg gctgccagtt tg                                     332
//
ID   MLT1C       repbase; DNA   ; ROD   ; 466 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1c
DE   subfamily) - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MLT1c subfamily; STIR;
KW   MLT1C.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-466
RA   Rouyer F., de la Chapelle A., Andersson M., Weissenbach J.;
RT   "An interspersed repeated sequence specific for human
RT   subtelomeric regions.";
RL   The EMBO Journal 9(2), 505-514 (1990).
XX
RN   [2]
RP   1-466
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
SQ   Sequence 466 BP; 135 A; 99 C; 115 G; 104 T; 13 other;
     tgttatgggt tgaattgtgt ccccccaaaa ttgatatgtt gaagtcctaa cccctagtac        60
     ctcagaatgt gaccttattt ggaaataggg tcwttgcaga tgtaattagt taagatgagg       120
     tcatactgga gtagggtggg ccctaaatcc aatatgactg gtgtccttat aaraagagga       180
     aatttggaca cagacacgca cacggggaga aggccatgtg aagacggagg cagagattgg       240
     agtgatgcak ctacaagcca aggaacgcca argrytgcca gcaaaccacc agaagctagg       300
     aagaggcaag gaacagattc tccctcacag ccytcagagg arrccagccc tgccgacacc       360
     ttsatctcgg acttctggcc tccagaactg tgagagaata matttctgtt gtttaagcca       420
     cscagtttgt ggtactttgt tacggcagcc cyaggaaact aataca                      466
//
ID   ZOMBI_B     repbase; DNA   ; ROD   ; 468 BP.
XX
AC   .
XX
DT   13-JAN-1998 (Rel. 6.4, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA
DE   transposon - a consensus.
XX
KW   Non-autonomous DNA transposon; MER46; ZOMBI_B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-338
RA   Smit F.A., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RP   1-338
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit F.A.;
RT   "Identification of new medium reiteration frequency repeats in
RT   the genomes of primates, rodentia and lagomorpha.";
RL   Genetica 98, 235-247 (1996).
XX
RN   [3]
RP   1-468
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?.";
RL   Direct Submission to Repbase Update..
XX
CC   [3] (Consensus)
XX
CC   26 bp teminal inverted repeats, TA target site duplication [1,2].
XX
SQ   Sequence 468 BP; 153 A; 99 C; 71 G; 126 T; 19 other;
     caggttgagc atccctaatc tgaaaatccg aaatccaaaa tgctccaaaa tctgaaactt        60
     tttgagcacc aacatgatgc cacaagtgga aaattccaca cctgacctca tgtgataggt       120
     cacagtcaaa ayacaatcaa gactnnncna gcnnctncng ttgctnttnc tgccagncaa       180
     cnacagnttg tgcacctngn tggcaragan actgacacat ttgctttctk atggttcagt       240
     gtacacaaac tttgtttcat gcacaaaatt atttaaaata ttgtataaaa ttaccttcag       300
     gctatgtgta taaggtgtat atgaaacata aatgaatttc gtgtttagac ttgggtccca       360
     tccccaagat atctcattat gtatatgcaa atattccaaa atccaaaaaa atctgaaatc       420
     caaaacactt ctggtcccaa gcatttcgga taagggatac tcaacctg                    468
//
ID   L1MB7       repbase; DNA   ; ROD   ; 922 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MB7) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; MER12; L1MB7 subfamily;
KW   L1MB7.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-922
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-920
RA   Smit F.A.;
RT   "L1MB7.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   17%.
XX
SQ   Sequence 922 BP; 365 A; 149 C; 176 G; 223 T; 9 other;
     cttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tttgaataga catttctcca aagaagatat acaaatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatta gggaaatgca aatcaaaacc       180
     acaatgagat accacttcac acccactagg atggctataa ttaaaaagac agacaataac       240
     aagtrttggc gaggatgtgg agaaattrga accctcatac attgctggtg ggaatgtaaa       300
     atggtgcagc cactttggaa aayagtttgg cagttcctca aaaagttaaa catagaatta       360
     ccatatgacc cagcaattcy actcctaggt atatacccaa gagaawtgaa aacatatgtc       420
     cacacaaaaa cttgtacacg aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aactgatgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagccat aaaaaggaat gaagtactga tacatgctac aacatggatg       600
     aacctcgaaa acattatgct aagtgaaaga agccagacac aaaaggycac atattgtatg       660
     attccattta tatgaaatgt ccagaatagg caaatccata gagacagaaa gtagattagt       720
     ggttgccagg ggctgggggr aaggggaaat ggggagtgac tgctaatggg tacggggttt       780
     ctttttgggg tgatgaaaat gttctaaaat tagatagtgg tgatggttgc acaactytgt       840
     gaatatacta aaaaccactg aattgtacac tttaaaaggg tgaattttat ggtatgtgaa       900
     ttatatctca ataaarctat aa                                                922
//
ID   L1MD1       repbase; DNA   ; ROD   ; 973 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 5, Created)
DT   20-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MD1) - a consensus sequence.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MD1 subfamily; L1MD1.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-973
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
CC   Temporarily contains ORF2 region consensus of L1MB7 (subfam L1M4)
CC   ORF2 ends at bp 675.
XX
SQ   Sequence 973 BP; 360 A; 144 C; 179 G; 244 T; 46 other;
     yttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga yttgaataga tatttctcca aagaagatat ayaaatggcc       120
     aataagcaca tgaaaagatr ctcaacatca ttagtcatca gggaaatgca aatyaaaacc       180
     acaatgagat aycacttcac acccaytaga atggctaaaa ttaaaaagac agrmaatamc       240
     aartgttggy raggatgtrg agaaaytgga achctcatac aytgctggtg ggaatgtaaa       300
     atggtacarc yactttggaa aacagtttgg cagttcctca aaaagttaam aatagagtta       360
     ccatatgacc cagcaattyc actcctaggt atwtacccaa gagaaatgaa aacatayrtc       420
     cayacaaaaa cttgtacaca aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aatratwgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagcmat aaaaaggaat gaagtamtga tmyatgcaac aacatggatg       600
     aaccttgaaa acattatgct aagtgaaaga agccarrcac aaaagrccac atattgtatg       660
     attccattta cataacattc ttaaaatgac aaaattwtag arwtgragar cagattcctg       720
     gttgccaggg gttagggacg ggggtggggg tggagggagg tgggcatsst ggagttccct       780
     gtggtgatgg aaatgttctg tatcttcact gtcactgtat caatgtcaat atcctggttg       840
     tgataytgta ytatagtttt gtaagatgtt accattgggg gaagctgggt gaagggtaca       900
     cgggatctct ctgtaytatt tcttacaatt gtctgtgagt ktayaattat ttcaaaataa       960
     agtttaattt aaa                                                          973
//
ID   MER69B      repbase; DNA   ; ROD   ; 1501 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 4)
XX
DE   MER69 repetitive element - a consensus.
XX
KW   DNA transposon; MER69B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1501
RA   Smit F.A.;
RT   "MER69B.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   11 bp terminal inverted repeats. 8 bp duplication.
CC   MER69B is an internal deletion product of an Activator-hobo-like
CC   DNA transposon. The product of a small ORF remaining at bp
CC   942-1265
CC   has homology to C. elegans hobo transposases.
CC   Average divergence from consensus 25-26%.
XX
SQ   Sequence 1501 BP; 443 A; 274 C; 305 G; 450 T; 29 other;
     cagaggcaga tttaccgtga agctaatgaa gcttaagctt cagggcccct cacttgcacg        60
     ggccccttcc aaggccctgg gaggggccct agcaatgtgt tcacatggtc atatgttttt       120
     gtaaaatttg caaaagtaag atattttaac cacaattggt taagactgct gtctctttcc       180
     actccgactt cccctccatc acacttcccc tcatgtcggg tggtattgga gtggccgtgg       240
     gcatttttgg gatctggcta agggaaagtt gagttgggga tacatttagt ttgggtttag       300
     tgggatatat ttatgtggtt cgcagtcact tccgtgtata gttaagttat tgctagccgt       360
     cccggtatag gaatggcttc caggaayatt cctactgccc actgtgccga ctcacccagc       420
     gtcgtgacmt gaggcacagg accggagrtc gtatcgcgat atgaacgtgt cctacggcac       480
     ctggcaccgg aagtatgcgg gtagtggagg agaaacaagg tttgaaatgt acagagccag       540
     aagctagtct gtggaaaatt cttccaatca tcagacgtgt aaaattgtaa gcggaggatt       600
     cggttctcat cgatgcctag ycagagcaga agttctctcc tgtcagaaat atactcgata       660
     atgcagcgta tacaattata aatgcamcat gcatttattt gcatttttgg aagggaatca       720
     tgcgaaatag aatttatcag aantccttgt ttgtagggca cagatctrta gcagtactac       780
     aaacagtgag cacatctgtn nnnnnnnnnn nnnnnnttat taamtttctt gctgatatga       840
     catgaaatwc tgacgttaac gaagataaca sttcacttct aatttaccat gacaaaaaag       900
     acatcagtga caaactggtt actgagtgtc attaattcta agagyattta agattagtca       960
     ctgcacaaga aaacttgaaa tgccctgaaa tcttacagct catatatgaa agaaacttga      1020
     taggggtttc cccaaatttg acaacaattc taaaaattta catgacatta ccaataacga      1080
     gttgtgaagc tgaaagaaac ttttctaaac tatcaataat aaaaaacaaa tttcgatcaa      1140
     ccatgctaga ggaaagactg aattatcttt ctattctctc tatagaaaat attacaaaat      1200
     cgttgtcata tgaagaggcg atcaaagagt atgcagccaa aaaatgtagg gaaaaartat      1260
     tatagaagtg tgtcaggcag ttaattaata aaaatatggt gttgtttttc tggattttgt      1320
     gatgtttgtg gtatttgtca actttttaaa atttgtaatt tgttgcgatt tcttttctca      1380
     ttctaaataa atattcactt ttgtacctaa ttttgtattc gtaattttgt attctttttc      1440
     ttaaagaggg ccccccaaat tgtataagct tcaggcccca caaaacctgg atctgcccct      1500
     g                                                                      1501
//
ID   L1ME2       repbase; DNA   ; ROD   ; 911 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1ME2) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; MER36; MER38;
KW   L1ME2 subfamily; L1ME2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   471-728
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment.";
RL   Nature Genet 3, 137-145 (1993).
XX
RN   [2]
RP   1-911
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   24%
CC   Replaces MER36 (Acc. No. Z15025) and MER38 (Acc. No. Z15026).
XX
SQ   Sequence 911 BP; 359 A; 161 C; 159 G; 214 T; 18 other;
     cttgtatcca gaatatataa agaacgccta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga cttgaatagg catttcacca aagaagatat acagatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatca gggaaatgca aattaaaacc       180
     acaatgagat accacttcac acccactaga atggctaaaa ttaaaaagac cgacaayaac       240
     aagtaytggc gaggatgtgg agcaactrra actcycatac attgctggtg ggaatgtaaa       300
     atggtacaac cactttggaa aayagtttgg cagtttctca aaaagttaaa cacgcaccta       360
     ccctatgacc cagcaattcc actcctaggt atttacccaa gagaaatgaa aacatatgtc       420
     cacacaaaga cttgtacaag aatgttcata gcagctttat tcataatagc cmmaaagtgg       480
     aaacaaccca aatgtccatc aacaggagaa tgaataaaca aattgtggta tatccataca       540
     atggaatatt actcagcaat aaaaaggaat gaactaytga tacacgcaac aacatgaacg       600
     aatctcgaaa acattatgtt gagcgaaaga agccagacac aaaagantac atactgtatg       660
     attccattta tatraaattc wagaacaggc aaaactaatc tataatgnta gaaatcagaa       720
     tagtggttgc ctctggkgag ggtraatgac tggraagggr catgagggaa ttttctgggg       780
     tgatggaaat gttctatatc ttgatcgggg tggtggttac acgagtgtat acatttgtca       840
     aaactcatcg aactgtacac ttaaaatctg tgcattttac tgtatgtaaa ttatayctca       900
     attttaaaaa a                                                            911
//
ID   RMER2       repbase; DNA   ; ROD   ; 130 BP.
XX
AC   L00605;
XX
DT   27-JAN-1997 (Rel. 3, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat.
XX
KW   Repetitive sequence; RMER2.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-130
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit F.A.;
RT   "Identification of new medium reiteration frequency repeats in
RT   the genomes of primates, rodentia and lagomorpha.";
RL   Genetica 98, 235-247 (1996).
XX
CC   [1] (Consensus)
XX
CC   RMER2 was found also in Rattus norvegicus.
XX
SQ   Sequence 130 BP; 33 A; 24 C; 32 G; 41 T; 0 other;
     ttggcttggg tttcttttgg ggggcaactt ggaaactaat gctaggtacc agcctgttag        60
     tttacctgag ttcaaactta ggtcaggttc tctaaaatgg agtctgaatt taaaagactc       120
     ggcatcccaa                                                              130
//
ID   MER58       repbase; DNA   ; ROD   ; 224 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 5, Created)
DT   19-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   Medium reiteration sequence MER58; DNA transposon.
XX
KW   Repetitive sequence; TIR; Non-autonomous DNA transposon; MER58.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-224
RA   Kapitonov V., Jurka J.;
RT   "unpublished.";
RL   Direct Submission to Repbase Update.
XX
CC   [1] (Consensus)
XX
CC   MER58 is a nonautonomous DNA transposon. It is flanked by
CC   terminal CA and TG ends with 16 bp terminal inverted repeats
CC   (TIR).
CC   MER58 can be characterized by 8 bp target site duplication.
CC   Target site (CTCTARAR) and TIR consensuses resemble those of
CC   DNA transposons from the "MER1 group".
XX
SQ   Sequence 224 BP; 60 A; 51 C; 56 G; 57 T; 0 other;
     caggggtcgg caaacttttt ctgtaaaggg ccagatagta aatattttag gctttgcggg        60
     ccatacggtc tctgtcgcaa ctactcaact ctgccgttgt agcgcaaaag cagccataga       120
     caatatataa acgaatgggc gtggctgtgt tccaataaaa ctttatttac aaaaacaggc       180
     ggtgggccag atttggccca tgggccatag tttgccgacc cctg                        224
//
ID   HAL1        repbase; DNA   ; ROD   ; 1727 BP.
XX
AC   .
XX
DT   31-MAR-1998 (Rel. 6.4, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   HAL1 repetitive element - a consensus sequence.
XX
KW   HAL1; LINE1-like element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1727
RA   Smit F.A.;
RL   Direct Submission to Repbase Update (MAR-1998).
XX
CC   [1] (Consensus)
XX
CC   HAL1 resembles Half An Line1 element, as it encoded a protein
CC   closely
CC   related to the ORF1 of LINE1 product (the LINE1 mRNA binding
CC   protein
CC   p40), but has no similarity to ORF2. Position 156 to 840 is 68%
CC   similar
CC   to the ORF1 region of the old LINE1 subfamily L1ME. Position 967
CC   to
CC   1099 is 76% similar to part of the coding region in the 8A-2B and
CC   8A-2V
CC   mRNAs (GenBank entries MM8A2BGEN and MM8A2VGEN). Average
CC   divergence of
CC   copies from the consensus is 28%. The 5' end of HAL1 is probably
CC   incomplete.
XX
SQ   Sequence 1727 BP; 708 A; 263 C; 364 G; 358 T; 34 other;
     ccctatagtg aagcccacma cctggcaagc cccacccacg cactcagagc ttccaagtcg        60
     ctttttagts tcccactctt aaatatgagc agacagccaa ggatcaccag acatctgagg       120
     aaancctcta atatggcaga caganaaata aaaacagaga aaaacawwnt ntatccatga       180
     aacaagaaya ggatgctata aaaaggaaca ttcagagaac aaaaagaagc tcttggaaat       240
     taaaaacgtg agagcagaaa ttaaaatttc aatagaaggg ttggaagata aagttgagga       300
     aatctcccag aaagtagaac aaacaaagga taaagatacg gaaaatagga gagaaaagaa       360
     ttaaaaaaat tgaggatcag tccaggaggt ccaacatcca actaatagaa gttccagaaa       420
     gagagaacag agaaaaagat ggaagagaaa ttatcaaaga aataattcaa gaaaatttcc       480
     cagaactgaa ggacatgaat ttccagattg aaaggnccca ccgagtgctt accgcaaaaa       540
     tgaaggaaaa aaatagaccc acaccaaggc acatcattgt gaaatttcag aacactgaga       600
     naaaaggaaa atcccaaaag cttccagaga gaaaaaaagg tcacatacaa aggatnagaa       660
     tcagaatggc atyagacttc tcaacagcaa cactggaagc tagaagacaa tggagcaatg       720
     ccttcaaaat tctgagggaa aatgatttyc aacctagaat tctataccca gccaaactat       780
     caatcaagtg tgagggtaga ataaagacat tttcagacat gcaagatctc aaaaaattta       840
     cctcccatgc accctttctc aggaagctac tggaggatgt gctccaccaa aacgagggag       900
     taaaccaaga aagaggaaga catgggatcc aggaaacagg ggatccaaca caggagagag       960
     gtaaagggaa ttcccaggat gatggtgaag ggaaattcca ggatgacagc tgtgcagcag      1020
     gcctagagag caaccagtcc agattggagc aggaagatgg aaggctccag gaggaatgtt      1080
     ctcaagaaaa tagaanacaa atgaaactga tagattatct gatgtgtttg aatatattga      1140
     gaggntatna tttagwcatg tgaaagtttg ggggagaatt gaattagtga taggtacana      1200
     gaaaactaag caaatgaaaa aaagcaagac aattattaac tccagggaaa acaaaaagtt      1260
     gtacaagaaa ggaaatgtaa tcatagtaca ctacatggct cagctgtgaa taacatattt      1320
     acatagtcat aataatgtaa acactraata ctgatttaac caaaattatg atataaacta      1380
     tattgggagg ataagaaatg gaaagggtgt gcgtatkgtg tangnggaat garagaanta      1440
     aatcctcatc ttccatagta ggaagtcart agataatgtc taaaactgaa aaatcaagaa      1500
     atagcaatat aagcatgtta tttagaaata tggaggtaaa tattccaaaa gaatcagcta      1560
     aaagagttga aagtggttgc ctctggggaa ggagctgnag gtggtgaaga gngnagggac      1620
     ggggaaytgc tgttttttat aagcctttta gtactatttg accttttaaa ctatatacat      1680
     rtattacttt aatttaaaaa antaanttat aaaaaagnaa ataagta                    1727
//
ID   MLT2B2      repbase; DNA   ; ROD   ; 503 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   27-JAN-1997 (Rel. 6, Last updated, Version 2)
XX
DE   Interspersed repeat MLT2B2 - a consensus.
XX
KW   Inerspersed repeat; MLT2B2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-503
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. thesis (USC 1995).
XX
CC   [1] (Consensus)
XX
CC   This sequence is a human endogenous retroviral LTR.
XX
SQ   Sequence 503 BP; 111 A; 129 C; 121 G; 134 T; 8 other;
     tgtgatggtt aattttatgt gtcaacttga ctgggctaar gggtgcccag atagctggtt        60
     aaacattatt tctgggtgtg tctgtgaggg tgtttccaga tgagattagc atttgaatca       120
     gcggactgag taaagaagat tgccctcacc aatgtgggcg ggcatcatcc aatccgttga       180
     gggcctgrat agaacaaaaa ggcagaggaa gggtgaattt gctctctctc cttgagctgg       240
     gacatccatc ttctcctgcc cttggacatt agaactccag gttctcgggc cttcggacty       300
     cgggacttgc accagcagcc ccccagattc tcaggccttc ggactcggac tgaryyacgc       360
     caccggcttc cctggttctc cagcttgcag acggcatatc gtgggacttc tcagcctcca       420
     taatcacgtg agccaattcc cctaataaat cycytctatc catcctattg gttctgtctc       480
     tctggagaac cctgactaat aca                                               503
//
ID   MLT1D       repbase; DNA   ; ROD   ; 505 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1d
DE   subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1d subfamily; MER26; MLT1D.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   334-465
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-505
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [2] (Consensus)
XX
CC   Replaces MER26 sequence.
XX
SQ   Sequence 505 BP; 149 A; 96 C; 138 G; 113 T; 9 other;
     tgtggtaggc wgaataatgg ctccccaaag atgtccacgt cctaatcccc agaacctgtg        60
     aatatgttac cttacatggc aaaagggact ttgcagatgt gattaagtta aggatcttga       120
     gatggggaga ttatcctgga ttatccgggt gggcccaatg taatcacaag ggtccttawa       180
     agagggaggc agagggtcag agtcagaaga aggagatgtg acgatggaag cagrragnga       240
     aaactcaacg ttgctggctt tgaagatgga ggaaggggcc atgagccaag gaatgcgggc       300
     agcctctaga agctggaaaa ggcaaggaaa cggattctcc cctagagcct ccagaargaa       360
     cgcggccctg ccgacacctt gattttagcc cagtgagacy cattttggac ttctgacctc       420
     cagaactgta agataataaa tttgtgttgt tttaagccac taagtttgtg gtaatttgtt       480
     acagcagcma yaggaaacta ataca                                             505
//
ID   L1MD_5      repbase; DNA   ; ROD   ; 3320 BP.
XX
AC   .
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   14-FEB-2000 (Rel. 7.1, Last updated, Version 4)
XX
DE   Partial L1MD LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1MD_5; MER79; L1M6_5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   500-1
RA   Smit F.A.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [2]
RP   1-1604
RA   Jurka J., Walichiewicz J., Kapitonov V.V.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (28-JUL-1997).
XX
RN   [3]
RP   1-1604
RA   Smit F.A.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (19-AUG-1997).
XX
RN   [4]
RP   1605-3320
RA   Jurka J.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   5' end of L1M subfamilies.
CC   Originally expanded to 1619 bp and classified as a 5'-portion of
CC   L1
CC   (Jurka et al. [2]). A shorter version submitted by A.F.A. Smit on
CC   Aug. 6 - deposited in the Appendix. Minor refinements of the 1619
CC   bp consensus [2] worked out by A.F.A. Smit (August 19, 1997 [3]).
CC   Replaces MER79 [1] and L1M6_5 [2]. Average divergence from
CC   consensus is
CC   24%. Appears to be 5' end of L1MD1 and L1MD2 subfamily LINEs.
XX
SQ   Sequence 3320 BP; 1301 A; 692 C; 678 G; 627 T; 22 other;
     ttaaaaacaa agcgggagac ttccgcttcc gggaagatgg agtagacgta cttttcccta        60
     ttcctcccgc taagtacaac taaaaaccct ggacattata tataaaacaa acataagaag       120
     actctgaaag gtggagagaa gaaggcagac cggctaggga cctcgggacc cgaggaacga       180
     cacggtagtg agttccctgg gttttctttt tgcctcatat atcccagact tggagctgaa       240
     gaagccggca acccggaaac gccaacgggc acagacaaaa aaagccccaa caaaagcctg       300
     ctctctctag ccaaaggacc aggaaagggg cagcctagca agacagaaaa cttttagaca       360
     ataaccgctc tactccagcc aaacaccaca gaaaaaactg tggccccacc cccacccacg       420
     ccagcaaagg ccgagtgggg agcctagact tccaccctca ccaggctgta acgaggcgcc       480
     ccaacacctc caccgggatg gtgtcagaga aggccaagta gggagctggg actttcatcc       540
     ccgccaggcg gtaatgaggc ccmccttccc cttgccmctg cggtgtcagt ggagaccacg       600
     tggggagcct ggacttccac ccccacccgg cagtaatgag gcgcccctcc ccctccctac       660
     tggggtggtg tcagaggagg cctagtggag agtcgggact ttcaccaccg cccagcggta       720
     atgaagccac ctcctcctct tgccmccatg gtgtcagtgg aggccacgtg gggagcagta       780
     atgaggcact cctacccctc ccagccaggg aggtatcagc ggaggcctag tggggagccg       840
     aactcccacc cccgcccagc agtaacgagg agcccctccc tcacctcggg tgtcaacgga       900
     ggccgagtgg ggaacctgga cttctacccc cacctggcag taatgaggca gcgcccctnc       960
     ccctcycctg ccggagcggt gtcagaggaa gccggctaaa acagaaggtt taaataagat      1020
     ccagagtctc ataacataat acccaaaatg tccaggtttc aatcgaaaat cactcgtcat      1080
     accaagaacc aggaaratct caaactgaat gagaaaagac aatcaataga cgccaacacc      1140
     gagatgacag agatgttaga attatctgac aaagatttta aagcagccat cataaaaaat      1200
     gcttcaataa gcaattacga acgtgcttga aacaagaraa aagtagaaag cctcagcaaa      1260
     gaaatagaaa gtctcagcaa agaaatagaa gatataaaga agaaccaaat ggaaatttta      1320
     gaactgaaaa atacaataac cgaaataaaa anctcaatgr atgggctcaa tagcagaatg      1380
     gaggggacag aggaaagaac cagtgaactt gaagatagag caacagaaat tacccattct      1440
     gaacaataga gagaaaatag attggaaaaa aaaatggaca gagcctcagg gacctgtggg      1500
     actataacaa aagatctaac attcgtgtca tcggagtccc agaggagagg aaaaagagrr      1560
     tagtatttga agaaataatg gctgaaaatt tcccaaattt ggcaaaagac ataaacctac      1620
     agatagattc aagaagctga gtgaacccca aacaggataa acccaaagaa atccacacca      1680
     agacacatca tagtcaaact tctgaaaact aaagacaaag aaaaaaaaat catcttgaaa      1740
     gcagcgagag agaaatgaca ccttacctat aggggaaaaa caattcaaat gacagtggat      1800
     ttctcatcag aaaccatgga ggccagaagg aagtggcaca acaatttttt caagtgctga      1860
     aagaaaagaa ctgtcaaccc agaattctat atccagyaaa aatatccttc aggaatgaag      1920
     gggaaatcaa gacattctca gatgaagaaa aactaagaga atttgttacc agcagaccta      1980
     ccctaaaaga atggctaaag gaagttctct aaacagaaag gaaatgataa aagaaggaat      2040
     cttggaacat caggaaggaa gaaagaacat agtaagaagc aaaaatatgg gtaaatacaa      2100
     tagactttcc ttctcctctt gagttttcta aattatgttt gatggttgaa gcaaaaatta      2160
     taacactgtc tgatgtggtt ctngcnaaaa atgtatgtag aggaaatatt taagacaatt      2220
     atattataaa ttgggggagg gtaaagggac ataaagggag gtaaggtttc tacacttcac      2280
     ttgaactggt aaaatgataa caccagtaga ctgtgataag ttatgtatat ataatgtaat      2340
     acctagagca accactaaaa aagctataca aagagatata ctcaaaaaca ctatagataa      2400
     atcaaaatgg aattctaaaa aaaatgttca agtaacccac aggaaggcag gaaaaagaaa      2460
     acagagaaat gaaaaacaga acaaacagaa aacaaaaaat aaaatggcag acttaagccc      2520
     taacatatca ataattacat taaatgtaaa tggtctaaat acaccaatta aaagacagag      2580
     agattggcag agtggattaa aaaacatgac ccaactatat gctgtctaca agaaactcac      2640
     ttcaaatata ataatatagg caggttgaaa gtaaaaggat ggaaaaagat atatcatgca      2700
     aacattaatc aaaagaaagc aggagtggct atattaatat cagataaagt agactcttca      2760
     gagcaaagaa aattaccaga gacagagagg gacattacat aatgataaaa gggtcaatcc      2820
     acaaagaaga catagcaaat cctaaatgtg tatgcaccaa acaacagagc tgcaaanata      2880
     tgtgaagcaa aaactgatag aactgaaagg agaaatagac aaatccacaa ttatagttgg      2940
     ggacttcaac anccctctct caacaattga tagaacaact agacagaaaa tcagcaagga      3000
     tatagaagaa ctcaacaata ccatcaacca ataggatcta attaacattt atagaacatt      3060
     ccacccaama acagcagaat acacattctt ttcaagtayc canggaacat ataccaagat      3120
     agaccatatc ctgggycata aaacaaacct caacaaattt aaaagaattg aaatcataca      3180
     gagtgtgttc tctraccaca atggaatcaa actagaaatc aataacagaa agataacagg      3240
     aaaatctcca aacacttgga aactaaacaa catacttcta ataatccatg ggtcaaaaaa      3300
     gaagtctcaa aggaaatnaa                                                  3320
//
ID   RSINE2A     repbase; DNA   ; ROD   ; 290 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 2.03, Created)
DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   SINE element RSINE2 subfamily - a consensus.
XX
KW   SINE2; SINE; Non-LTR Retrotransposon; Interspersed Repeat; B4;
KW   RSINE2 family; RSINE2A; retroposon; subfamily RSINE2A.
XX
OS   Rodentia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-290
RA   Lee I., Westaway D., Smit F.A., Cooper C., Yao H., Prusiner B.S.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions.";
RL   Unpublished (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 290 BP; 75 A; 77 C; 86 G; 50 T; 2 other;
     tggggctggg gagatggctc agtcgataaa gtgcttgccg tgcaagcatg aggacctgag        60
     ttcggatctc cagcacccac gtaaaagccg ggcatggtga tatacgcctg taatcccagc       120
     gctggagagg cggagacagg aggatccctg gggctcgctg gccagccagc ctagccgaat       180
     cggcgagctc caggttcagt gagagaccct gtctcaaaaa ataargtgga gagtgattra       240
     ggaagacact cggtgttaac ctctgacctc cacacacaca cacacacaca                  290
//
ID   MT2B        repbase; DNA   ; ROD   ; 533 BP.
XX
AC   .
XX
DT   25-APR-1997 (Rel. 3, Created)
DT   25-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Long terminal repeat of retrovirus-like element; MTE2; MT2B.
XX
OS   Sciurognathi
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia.
XX
RN   [1]
RP   1-533
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 220-224..
XX
CC   [1] (Consensus)
XX
SQ   Sequence 533 BP; 136 A; 114 C; 126 G; 141 T; 16 other;
     tgtagtggct attcctggtt gtcaacttga ctatatctgg aatgaactac aatccagaat        60
     tggaaggctc acctgtgatc ctgatcttga ggctggaaga tacaagtttc tgacctggat       120
     cttggcatgg agatcttgag gcatagtggc catgaaaanc ttaggcccag gcaaggtagt       180
     acangccttt aattccagga gactgaggca aggagatctt tgagttcaag gtcanccaga       240
     tcyaggcnng rngrtacaca tctttaatct gggccacacc ttctggctgg aggcctacat       300
     aaggacattg gaagaaggaa ggntcnytyt cttcgcctgc ttgyacttac tggccagyac       360
     atctgttgga gcctacttct tcaggattcc agcttatata gaagaccagc tgaaayagct       420
     agcctcgcgg gactgagcaa ctactagatc cttggacttt ccattcacag ctgaccattg       480
     ttgggttagt tggactgcag actgtaagtc attccaataa attcccttaa tat              533
//
ID   MER69A      repbase; DNA   ; ROD   ; 179 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   MER69 repetitive element - a consensus.
XX
KW   DNA transposon; MER69A.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-179
RA   Smit F.A.;
RT   "MER69A.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   Putative DNA transposon; 12 bp terminal inverted repeats.
XX
SQ   Sequence 179 BP; 43 A; 50 C; 35 G; 51 T; 0 other;
     ccagaggcag atttaccgtg aagctaatga agcttaagct tcagggcccc tcacttgcat        60
     aggccccttc caaggccctg tacctaattt tgtattcgta attttgtatt ctttttctta       120
     aagagggccc cccaaattgt ataagcttca ggccccacaa aacctggatc tgcccctgg        179
//
ID   HERVK22I    repbase; DNA   ; ROD   ; 6837 BP.
XX
AC   .
XX
DT   30-APR-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   HERVK-related endogenous retrovirus flanked by LTR22s - a
DE   consensus sequence of internal part.
XX
KW   endogenous retrovirus; HERVK superfamily; LTR22; HERVK22I.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-6837
RA   Kapitonov V.V., Jurka J.;
RT   "HERVK22I.";
RL   Direct Submission to Repbase Update (APR-1998).
XX
CC   [1] (Consensus)
XX
CC   Average similarity of HERVK22I individual copies to the consensus
CC   sequence is about 91%.
CC   6 bp target site duplications. HERVK22I is flanked by LTR22s.
CC   Similarity of HERVK22I consensus sequence to known retroviruses
CC   is shown below:
CC   ----------------------------------------------------------------
CC   sequence begin end sequence begin end similarity
CC   ----------------------------------------------------------------
CC   HERVK22I 287 445 HERVK 281 439 0.64
CC   HERVK22I 1176 1429 HERVK9I 1062 1322 0.63
CC   HERVK22I 1441 1869 HERVK 1863 2336 0.65
CC   HERVK22I 2346 3009 HERVK9I 2380 3048 0.64
CC   HERVK22I 3046 3353 HERVK 3659 3966 0.65
CC   HERVK22I 3706 3805 HERVKC4 2027 2126 0.82
CC   HERVK22I 3873 4359 HERVKC4 2127 2606 0.86
CC   HERVK22I 4385 4821 HERVK 4975 5427 0.66
CC   HERVK22I 4910 4979 HERVKC4 3080 3148 0.74
CC   HERVK22I 5028 5065 HERVKC4 3149 3186 0.64
CC   HERVK22I 5114 5334 HERVKC4 3187 3408 0.79
CC   HERVK22I 6654 6785 HERVKC4 3401 3531 0.80
CC   ----------------------------------------------------------------.
XX
SQ   Sequence 6837 BP; 2027 A; 1648 C; 1423 G; 1722 T; 17 other;
     ggtggtgccc cgcgtgagga acgctgcaaa cggatcgtga cggacccctc gaaaatgaag        60
     gtgaaaagaa ctgcgcagtc agtgagtaat cagtaagtca ttggtgcccg ctcgggattt       120
     ccaagttcgg ggggaattgt tcaggctagg gtttcatcat gggacaacag ttatcagctc       180
     aacagaaaca gtatataaaa gtattgaaac agctgcttaa agctagcgga gcctcagttt       240
     cgcaggctca attaagggac ctaatgcaaa ctgttgtttc ccataaccca tggttcccgg       300
     aagaaggtac gctagacgta gagctctggg aacaagtggg gagaaatctt aaacaacatc       360
     atgcacaagg gcaacgggtc ccagtaacat ctttaacgtt atgggcctta gttagggcgg       420
     ctttggtccc gttatacaca gaagagccta aaaagggaag ggaggaggaa ccgtcaccta       480
     ccttaccacc tcctcgtccc tcagccccgc tatcaccggg ccaaaataac aaagaggaaa       540
     cggaggtttt gcctgagccc cctcctccaa tagattggaa aaaagacagg ggatacgcta       600
     cagctatggg accctgtctt aagcaagcgg cattagaagg ggagctctta gcctgcccgg       660
     taatgcaaga tcgacaaggc aatcaggtgt atgaacccat ttcttttaac gcttataaag       720
     agctaagaaa aagcattaaa gaaaacggag ccgctagccc atttatgaaa ggaatgattg       780
     aagccatggc agacaacttc tgtatgaccc catgggactg gtcagtgcta gctaaaacaa       840
     ctttggagcc cagccaatac ctcctctgga aggcagaata tgatgagttg tgtgaacaac       900
     aagccaacca gaatcaggtg gccaggcaag acataacagc tgctatgctc caggggaggg       960
     gtccccatgc cgatgtacaa caactagatt ttgatcccca ggcctatgca caagtgtctt      1020
     tgtgtgctct cagggcttgg gaccgaattc ccgaaagcgg agttcaacag ggatctttta      1080
     taaatgttca acaagggcct caggagccat ttgttgaatt tatcaatcag ttaacccagg      1140
     caattaagag acaaattagt cacgcccagg ccgctgatat cttattgttg caattggctt      1200
     atgaaaatgc taatgtcgat cgccagcaag caatgcaggc aatcagagga aaggcagcca      1260
     cagtcgggga acttatacga gcatgtcaac tggtggggac tgaaacacac aaagccaaaa      1320
     tattggctat ggcattaagg cctcctaaag tgaaaaggga gagaaaccca aattgttttc      1380
     tatgtggaga gccaggtcat atgaagaggg aatgccccaa taatagagac caaggtaact      1440
     caggaaaaga acccccttct atatgccccc aatgtaaaaa ggrgaaacat tgggcaaatc      1500
     aatgcaggtc caaatttgay aaaaacagma accccataag taaccaggcg ggaaacttca      1560
     tgakgggctg gccyyaggcc ccgctwmaar ctggggcaat gccagcagct ttcctcggtc      1620
     agatggaaag cccacagtcc tctctctcag agcagccacc actgggagcg caggactgga      1680
     cttactctgc cccaacaaat tagtgctaaa agaaggagaa gaccctaaaa gggttgcaac      1740
     cgggatctgg ggcccactgc ctccgggaac agtgggatta gtcctagggc gatcaagcct      1800
     atccagtaaa ggaattaatg tgctcactgg ggtaattgat agtgattatc aaggtgagat      1860
     attagttatg atggaatgta aaggtctgca tattcttccc cctggatcaa agatagctca      1920
     gttactgcty ttaccatact gggtccccaa cgcccacgga aaggaaaggg gaaagggaag      1980
     ttttggaagc acgggagcca caggagtata tgggaaycaa ttaatcactg atcagagacc      2040
     catgattacc ttaaaaattg gaaataaaaa ttttactggc ttattggaca caggggtgga      2100
     tatttcaatc attagtgatc aaaactggcc agaaacttgg ccttgggtca ctcagaaaca      2160
     aaaaattgtc agcatcgggg aagcgcacac agccaagcag agcacgcgcc ccctaacatg      2220
     ttgcgattcg gagggaagaa aggcagttat acaacctcta atcatgccca tccctgttaa      2280
     tctttgggga cgggacctat tagcccaatg tggggggtca ctctgcagac ccctttctaa      2340
     taatggccac tgttattatt cctcccctac ccctgacgtg gctctctcaa gatccaattt      2400
     gggtagaaca gtggccttta aagggagaga aattacaaag agcccatgaa ttagttgaag      2460
     agcaattaaa agccgggcat atagaaccat caaacagtcc ttggaattcg cccattttca      2520
     tcattcccaa aaagtctggt aaatggagac ttttgcatga cttacgtgct attaatgcta      2580
     atttgcaacc tatggggccc cttcaacagg ggctcccttc ccccgcggcg attcctcaag      2640
     attggcctat aatcgttatt gacttaaaag actgctttta tactattccc cttgcagaac      2700
     aggacagaga aaaatttgcg tttacaatac cagctatcaa taatgaaagg ccagcttgct      2760
     gatttcattg gaaagtgctt cctcaaggaa tgctaaacag tcctaccatg tgtcagtatc      2820
     atgtaaatca agctttgctc cccagtagaa aagaatttcc taattgcaag attattcatt      2880
     ttatggatga tattttacya gcagccccaa cggagccagt acttttaart ttatatacct      2940
     ctgtcgtaaa gaatacacag ytaagaggtt taatcatagc acctgaaaaa gtacaaatgt      3000
     cctctccttg gaaatatctt gggtacatac taacttcccg gtcagtaaga cctcaaaagg      3060
     ttaaattaaa tactagcaac ttacacacct taaatgatta tcagaaatta ctaggcgata      3120
     ttaactggct ttgccccacc ttgggcataa ctacttataa gttgcaaaac ctgttttcta      3180
     tcttaaaggg caatacagcc ctagactctc ccaggtattt aactcctgca gcaaaaaggg      3240
     aaattgagga aatagagcaa gctatttctc agaggcaact agatcgcata gacccatgat      3300
     attcagttca gttgtttgtt tttcccacta aacattcccc aacaggatta ataggacaga      3360
     tggccccagg gctgcgcttt ctagaatgga tttttttgct cacataccgg gactaaaaca      3420
     ctctctccct atatccagct aattagtaaa gtcatctatt caggccacag acgatgcaat      3480
     cagttgctag gttatgaccc tgatatcatc agaattcctt taagtaaaaa gcaattcgaa      3540
     gcagtattgc ccttatcttt agatctgcaa atagcactct ctgattacgc aggccatata      3600
     gagcatgccc ttcctgctga caaactactt cagttcttat ctcatactcc tgtggttttg      3660
     cctacaaaaa tagttcactc ccccatacct aacgctttaa cactgtttac tgatggctct      3720
     ggtaaacatg gaaaagcggc tatttggtgg agaccacata attccctcac tcattctgga      3780
     tttactagca ctcagagagc tgaggttgga gccttaatat tggccctgga gactttttct      3840
     gctcagccca tcaatattgt tagtgactct gcttactctg tttatttatt gcagaacctt      3900
     gaaacagccc tcattaagtc cactctggag cccaccctgt gtgcactttt tctttgactt      3960
     cagcaattgc tggatcaacg tacacatcct atttttatca cacatattcg agcccacagc      4020
     tcactgcctg gcccactggc ttatggcaat gatcaagcag acctgcaggt tatgacgtca      4080
     ctgcttgacc aagccaccca atcgcatcaa tttttccacc aaaattggag aaacttatct      4140
     aaacaatttc aacttaccca ragactagct aaacaaatta tcctgcaatg cccagattgc      4200
     cagctcacag gcacgtcccc tccttcaaca ggtgttaacc ctagaggact agaacctaat      4260
     cagttatggc aaacagatgt tacacacgtc cctgaatttg gaaaactaag atatgtacat      4320
     gtatccattg ataccaattc tcatctaatt agcgcacatg ctcttcctgg agagtccacc      4380
     cgatatgtca ttaaacatct tcttttaact tttgcattta tggggcggcc cacaaaaatt      4440
     aaaactgata atggtctggc ttatgccagc tcacaatttc aacaattttg tcacacatgg      4500
     aacatccaac attccacagg catcccgtat aacccccaag gacaggccat agtagaacgt      4560
     gcccattcca cccttaaaaa tatgctcaga aaacaaaaaa gggggaatat gagtaaggac      4620
     cctgcaacac tattggcaca agccttattt acccttaatt ttttaaattt aaatgataaa      4680
     tttcaatcag ctatagaaaa gcactttgct aaaacctctc aagacataaa acctgcagtt      4740
     ttatggaaag atgtaaacag taatgtatgg tgtggtccaa atgaattgtt aacatgggga      4800
     agaggatatg cttgtgttca caccccctca ggtcctcttt ggattccagc acgacgcatc      4860
     aaaccatacc atggcatggc taggacccaa cccagtacca gaaatgaaga aaatgaccct      4920
     gcaggaccca cagccccgga cgatgcagct tcctcggatg acacaagccc cggacattac      4980
     ctgggggatg ctgaagaaga caactcagga ggccgagcga atcctgctcc agacacagac      5040
     accattcact ccagataatt tgttccttgc tatgctctct gttgtacatt gcaactcatg      5100
     tagggcattg atccttttta tgctctcgct ttgtctgcaa cctgtacctg ctacactcta      5160
     ttgggctcat ctcttagatc cgcctttctt ccgccctgtt acctgggcag acactccctt      5220
     cccagcctct aataacgtaa ctgcttggct aggagggata gatttacccc cagtggggtc      5280
     cctcagtaat ggcacacatt ggactaaggt gccaggtaac actacatatc actccactat      5340
     cctcccactg tgtgtaagtt ataaaggttc taacccttac tgtgtacctg cccaaacaca      5400
     attatggcta catcatggca aaggaaatgc ctttacagtc ttagctgcag gtagcctcaa      5460
     accaggcaat gcaatcaatg ccactttccc aaacattcct tcctgtgcta aagaacaaag      5520
     ctgggaaagt aatggattcc actttagctg ggaggtctgt cacgggggac aagcccgtag      5580
     cctccagtta ggcaattata acatcttaga ctggagtccc cacggccatt tgcagggcaa      5640
     tcttactgat gtcctcatct atcatggcat caatcacagt ttcgtagcca cgtcccgttc      5700
     ccctatratt tgggccgatg gggggatggg atatcccaga ccccaagtaa agtccatgcc      5760
     accccaagac actttatggt gcctgggaca tcttagcacc tcccttaaca cctggcatgg      5820
     gacatatcat aattccagtc acaattatac tatgaccttt attcataatc acactgatca      5880
     gtgcctgatt tgcactaccc atccatatgt tttccttatg ggaaccgata tttccgttac      5940
     accccaaaac tccacgtttg tgacccgggt gcagggacag gcttggttcg cctcatgtat      6000
     cactaattat aatatatcta atttaaatat tactagtgtc atggtattga ggagacaatc      6060
     tgaggctttc ctaccagtca atttaacatg cgattggcaa ggttcctctg cccttgccac      6120
     cttagaatgt gccctgtccc aggtcagacg caaaagattc atagttacac ttacagcctt      6180
     tatagtctca gccatagtca tcctagcaac tgctagtgtt gctgtagcat ctattactga      6240
     atcagtacaa acagctactt ttgtagataa tttggccaga aatgtgtcta atgaacttct      6300
     cttacagcag ggtayagatc aaaagattct tgcacgtctg caagccctcg aggctgcctt      6360
     ggaatatgta ggggagcgac aagatgcact ggcattccaa cagcaattaa actgtgactg      6420
     ggagcataag cacatctgtg tcacctctct accttggaat caatcaatac atagttggga      6480
     tgaggtgaaa caacacctct ggggaacctt tcatgacaat ttaacagcag acgtaaagca      6540
     acttaaaact aaaattctag aatccctaaa cgccatagat ctacacgccc aacaaacagc      6600
     catatggaag ggtgtgcgag atcatctctc ctggatagac ccccgctcct gggggtcact      6660
     ccttgattgg aaaagaatgt tgctaattat actcatgttt gtcttatgtt atttactaat      6720
     tctaggatgc aaagccggaa tacgagctat aaccgccgcg cctgacagac ctgttgctgc      6780
     acacatctgt actcttcaat caacaaaacc tgatgcaaaa aacagaaaag ggggaga         6837
//
ID   SYNREP_MM   repbase; DNA   ; ROD   ; 266 BP.
XX
AC   X14228;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Mouse synaptonemal repetitive DNA sequence.
XX
KW   Repetitive DNA; MMSYNREP; SYNREP_MM.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-266
RA   Dadasheo Y.S., Bashkirov I., Belostosky D., Milshina N.,
RA   Karpota J.O., Bogdanob F.Y.;
RT   "Nucleotide sequence of a specific DNA from a mouse synaptonemal
RT   complex fraction.";
RL   Unpublished.
XX
RN   [2]
RP   1-266
RA   Bashkirov I., Belostotsky A.D., Bogdanob F.Y., Dadasheo S.,
RA   Karpota J.O., Milshina N.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (01-FEB-1989)N. Milshina,
RL   Institute of General Genetics, USSR Academy of Science, 117809
RL   GSP 1, Moscow B-333, Gubkin St.3 U.S.S.R..
XX
DR   GenBank; X14228; Positions       1     266.
XX
SQ   Sequence 266 BP; 113 A; 30 C; 59 G; 64 T; 0 other;
     gaacagatta gatgagtaag ttacactgaa aaacacattc gttggaaacg ggatttgtag        60
     aacagtgtat atcaatgagt tacaatgaga aacatggaaa atgataaaaa ccacactgta       120
     gaacagatta gatgagtgag ttacactgaa aaacacattc gttggaaacg ggatttgtag       180
     aacagtgtat atcaatgagt tacaatgaaa aacatggaaa atgataaaaa tcacactgta       240
     gaacatatta gatgagtgag ttaggg                                            266
//
ID   B3          repbase; DNA   ; ROD   ; 228 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 3, Created)
DT   11-AUG-1997 (Rel. 3, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE; B3 family; B3.
XX
OS   Rodentia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-228
RA   Kalb F.V., Glasser S., King D., Lingrel B.J.;
RT   "A cluster of repetitive elements within a 700 base pair region
RT   in the mouse genome.";
RL   Nucleic Acids Res 11, 2177-2184 (1983).
XX
RN   [2]
RP   1-228
RA   Lee I., Westaway D., Smit F.A., Cooper C., Yao H., Prusiner B.S.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions.";
RL   Unpublished (1996).
XX
CC   [2] (Consensus)
XX
CC   The tRNA-like region of B3 is very similar to that of B2.
XX
SQ   Sequence 228 BP; 65 A; 64 C; 51 G; 43 T; 5 other;
     ggggctggag agatagctca gcggttaaga gcactggctg ctcttccaga ggacccgggt        60
     tcggttccca gcacccacat ggcggctcac aaccgtctgt aactctagtt ccaggggatc       120
     tracnccctc ttctgacctc cacgggcacc aggcacgcac gtggtacaca gacgtacatg       180
     cargcaaaac actcatacac ataaaataaa aataaatmtt twaaaaaa                    228
//
ID   IAPLTR3_I   repbase; DNA   ; ROD   ; 6821 BP.
XX
AC   .
XX
DT   30-JAN-2004 (Rel. 9, Created)
DT   30-JAN-2004 (Rel. 9, Last updated, Version 1)
XX
DE   Mouse family of LTR retrotransposons - a consensus.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERVK; IAPLTR3;
KW   IAPLTR3-int; IAPLTR3_I; LTR.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RA   Karolchik D., Baertsch R., Diekhans M., Furey S.T., Hinrichs A.,
RA   Lu T.Y., Roskin M.K., Schwartz M., Sugnet W.C., Thomas J.D.,
RA   Weber J.R., Haussler D., Kent J.W.;
RT   "The UCSC Genome Browser Database.";
RL   Nucleic Acids Res 31, 51-54 (2003).
XX
RN   [2]
RP   1-6821
RA   Pavlicek A., Jurka J.;
RT   "IAPLTR3_I - a subfamily of autonomous LTR retrotransposons.";
RL   Direct Submission to Repbase Update (JAN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the UC Santa Cruz
CC   genome annotation. Similar to IAPEYI. Individual copies are ~98%
CC   identical to the consensus. Flanked by IAPLTR3 LTRs.
CC   IAPLTR3_I_ORF1: 525-1899 (458 aa) gag
CC   MGSSQSVITPLQAVLKQRDLQVTSHTLQNFVKEVDRVAPWYACSGSLTVASWNKLGRDLDRKHEEGDLRL
CC   GTKAIWKLIKNCLEDETCRPAIVEGQGTLEEVQDSMSETERSERIRAQKKKCLRKKGPPQDSEGRGEKKK
CC   GSETEPSTKKKPYTNFYPIHDLEALEINSSGSEDLDPSEEAKLEEEAAKYKEQRYNPDRWSRSRSNKKGS
CC   ISATVPTAPPLYELQYSANSFFPQEELKKIQMAFPVFDTGEAGRMHAPVDYKQLKELAESVCNYGVSANF
CC   TLVQVERFANMAMTPSDWQMIAKATLPNMGQYMEWKALWYDAAQNQARVNTTAVDDNQRQWTFELLTGQG
CC   QYATNQINYPWGAYAQIGAAAVKAWKALTRKGEAGGHLTKIVQGPQEAFSDFVARMTEAAARVFGDPEQA
CC   MPLIEQLIYEQATQECRAAITPRKKKGWYKTGLRYVGS
CC   IAPLTR3_I_ORF2: 2305-3061 (252 aa) pol (partial)
CC   MPQMNVQPILVKSPGPLPPRTMGLIVGRGSLTLQGLVVHPGVVDHQHLQDIQVLCSCPQGIFSISPGDRI
CC   AQLIFLPSPDKDEDNIKELRGMGSSGPDSAYLVMPLNARPTLHLFINDKDFEGIMDTGADKSIISSYWWP
CC   KSWPVTKSSHSLQGLGYQSCPAISSSTLTWQTSEGQRGLFTPYVLPLPINLWGRDVLSEMGITLTNEYSV
CC   QTTNIMKKMGYTKGKGLGSKEQGRLEPVSHNGNPGRRGLGFS
CC   IAPLTR3_I_ORF3: 3297-5580 (761 aa) pol (partial)
CC   MNLFGSIQRGLPLLSTLPKQWKIVILDIKDCFFSIPLCHQDRPRFAFTIPALNHMEPDKRFQWKVLPQGM
CC   ANSPTMCQLFVQAALEPVRQYFPSLLLLHYMDDILLCHKDMMLLQKSYSFLIKMLNQWGLQIAAEKVQIS
CC   EVGSFLGTIIFPDKILPQKLEIRRDHLHTLNDFQKLLGSINWLRPFLKISSAELKPLFDILKGDSHISSP
CC   RALTPAANKALQVVENALQNAQLQRIEESQPFNLCVFKTAQLPTAVLWQDGPLLWIHPNASPARVIDWYP
CC   NAVAQLALRGLKAAVTHFGRDPKLLIVPYTATQVQVLAATSDDWAVLVTSFSGQIDNHYPRHPILQFALN
CC   QAIVFPQVTAKNPLPEGIIVYTDGSKTGVGAYVTNNKIVSKQYNETSPQIVECLVVLEVLKAFPGPLNIV
CC   SDSSYVVNAVNLLEAAGVIKSSSKVADIFQKIQAVLLHRRFPVYITHVRAHSGLPGPISRGNDLADRATR
CC   VVAAALSSQVDAARNFHKQFHVTAETLRRCFALTRKEAREIVTQCQNCCQFLPVPHVGVNPRGIQPLQVW
CC   QMDVTHISSFRRLQYLHVSVDTCSGIIFASPLTGEKASHVIQHCLEAWSAWGQPKILKTDNGPAYTSQKF
CC   RQFCRQMNVTHLTGLPYNPQGQGIVERAHRTLKSYLIKQKGGVDEALPLTPRVAVSMALFTLNFLNLDEQ
CC   GHTAADRHCSEPNRPREMIKWKDVLTGKWRGPDPILIRSRGAICVFPQEEDNPLWVPERLT.
XX
SQ   Sequence 6821 BP; 1892 A; 1544 C; 1637 G; 1748 T; 0 other;
     tctggttgcc agaagcccgg gaattaacat cgccagcatc gaggagaacc cctggagatg        60
     gggtgggttc agaactgcag agaaaaggta agttcggaga ggtatgtctg atcgtgaacc       120
     tcttatccct tttgatttcg gtcttaatct agatgcaccc taggaagggg cggtagaagc       180
     tctagtcttg gttgccgtcc atcgaggctg gccctgaaat ttgctatcca ttgaggctgt       240
     ttctgaaata ttctgtccat cgaggctggt gctgaaattt gaggtccatc gaggctggtg       300
     ctaaaatttt ctgtccatcg aggctggtgc tgaaattctt attttgtcca tcgaggcttg       360
     tgctgaaatt tgaggtgtgg tcagtccgac gtagataagc ggcagcaccg aggtatcttg       420
     taagcctccc atagataagg gagcagagca ccgtgtttac ttttggcttt gcttaaggag       480
     taccataagt cgggcgtaga tcagccgcag gtactcattc tatcatgggc tcttcacagt       540
     cagtgatcac cccattacag gcagtgctaa agcaacgcga tctgcaggtc acctcccata       600
     cgctgcagaa ttttgttaag gaggtggatc gcgttgctcc ctggtatgcc tgttcggggt       660
     ctctaactgt agcctcatgg aataagctag gaagggacct tgaccgtaag catgaagagg       720
     gagacttacg cctaggcacc aaggcaattt ggaagctgat aaaaaactgt ctagaggatg       780
     aaacctgccg acccgccatt gtggagggac agggaacact agaagaggtt caggacagta       840
     tgtcagaaac cgaacggagc gagagaataa gagctcaaaa aaaaaaatgt ctaagaaaaa       900
     aaggacctcc ccaggattca gaaggaaggg gagagaaaaa gaagggcagt gaaactgagc       960
     cctctactaa gaaaaagcct tatactaatt tttatcctat ccatgacttg gaggccttag      1020
     agattaatag ttcagggtcc gaagatctag accccagtga ggaggctaaa ttagaggagg      1080
     aggcagcaaa atataaagaa caaagatata accctgaccg atggtcgcga tcaagaagta      1140
     acaaaaaggg tagcatatca gctactgtgc ccacagcgcc accactttat gaattgcagt      1200
     atagtgctaa ctcttttttt cctcaggaag agttaaaaaa gatacagatg gcatttccag      1260
     tctttgatac tggggaggcg gggcgtatgc atgccccagt ggactataaa caacttaaag      1320
     aacttgctga atctgtctgt aactatgggg tcagtgccaa ttttactctg gttcaggtcg      1380
     agagattcgc taatatggcc atgaccccat cagattggca aatgatagca aaggctacac      1440
     tccctaatat gggacaatat atggaatgga aagctctatg gtatgatgcg gcccaaaatc      1500
     aggccagggt caataccaca gcagttgatg acaaccagag acaatggacc tttgaattgt      1560
     tgaccggcca agggcagtat gccaccaatc aaattaacta tccttggggg gcatatgccc      1620
     agataggggc agctgcggtc aaggcttgga aggcacttac aagaaaaggg gaggctgggg      1680
     gtcaccttac aaagattgtt cagggccccc aggaagcatt ctctgatttt gtggcaagaa      1740
     tgactgaggc tgcagcccgg gtctttggcg accccgagca agccatgcct ctaattgaac      1800
     agctcattta tgagcaagcc acccaagagt gcagggcggc catcacacca agaaaaaaaa      1860
     aagggtggta caagactggc ttaagatatg tagggagcta ggaggccctc tcaccaacgc      1920
     gggactagcc gcggctatat tgaaatctca gaggcgccct aatttcaaca aacaaaaggc      1980
     gtgtttcaat tgtgggaaag ctggacattt gaaaagagat tgccctgtac ttgaacgtgc      2040
     aagaggagct gttctctgct cccgctgcag aaagggctat cacaaggcta gtgaatgccg      2100
     ctctgtcaga gatataaaag gcagactcct gcccccgata ggtgaagtta atccctcaca      2160
     gtcaaaaaac ggggtgctgg gcccccgatc ccagggccct cacaaatatg ggagccgttt      2220
     tgtcagaagc cagagcagga cagaggagat aacacccgac gagttacagg agtggacttg      2280
     cgtgccacct ccagtttttt actcatgccc caaatgaatg tgcaaccaat ccttgttaag      2340
     tctcctggac ccttaccccc tcggactatg ggtctcattg ttgggcgagg atctctcact      2400
     ttacaaggcc ttgtggttca tcctggagta gtggaccacc aacacctgca agacattcaa      2460
     gtcctttgct cctgccccca aggtattttt tccattagcc caggagatag aattgcacaa      2520
     ttaatattct tgcccagccc tgataaggat gaagataaca taaaagaatt gagaggtatg      2580
     ggttcttctg gccccgattc agcctatcta gttatgcctt tgaatgccag gcctactcta      2640
     catcttttta ttaatgacaa agattttgag gggattatgg acaccggggc agataagagt      2700
     atcatttcat cttactggtg gcccaagagc tggcctgtta caaaatcttc tcattcttta      2760
     caaggcctgg gttatcaatc ttgcccagcg attagttcat ccaccctgac atggcaaacc      2820
     tcagaaggac agaggggcct atttactcca tatgtgctcc cgctgccgat aaacctatgg      2880
     ggcagagatg tgctttctga gatgggaatc acattaacca atgaatactc agttcagacc      2940
     actaatatta tgaagaagat ggggtacaca aagggaaagg gattgggaag caaagaacaa      3000
     ggtagacttg agcctgtctc ccacaacggt aacccaggta gacggggctt gggtttttcc      3060
     taggggccgt tggggttaca agacccatcc cctgggtaac agaggaaccc gtgtgggtct      3120
     cccaatggcc gctatcctct gaaaaattgg aggcagtcaa caagctagtt acagaacagg      3180
     tgcagctcgg acatttggaa ccttccacgt ccccgtggaa tactccaatt tttgccataa      3240
     aaaagaaatc aggcaaatgg aggttacttc atgaccttcg agcaattaat gcacaaatga      3300
     accttttcgg ctcaatccag cggggtttac ctctgttatc taccctgcct aagcaatgga      3360
     aaattgtcat tttagacatt aaagactgtt tcttttccat ccctttgtgt caccaagatc      3420
     gaccaagatt tgcttttaca attccagccc ttaatcatat ggagcctgat aagaggttcc      3480
     agtggaaagt cctccctcag ggcatggcaa atagccccac tatgtgccag ctttttgtac      3540
     aggcagcatt agaacctgtg agacaatatt ttccctcctt actgttatta cattatatgg      3600
     atgatattct tttgtgccat aaagatatga tgcttttaca aaaatcctat tcatttttga      3660
     taaaaatgtt aaaccaatgg ggactgcaga tagctgcaga aaaggttcag atttcggaag      3720
     tgggttcctt tctgggaacc attattttcc cagataagat acttcctcaa aaattggaaa      3780
     ttcgcagaga tcatttacat actcttaatg attttcaaaa gttattgggg agtataaatt      3840
     ggcttaggcc ttttttaaag atttcctctg ccgagcttaa acctttattt gatattttaa      3900
     agggggattc acatatctcc tcccccagag cccttactcc tgcggctaat aaagccttgc      3960
     aagtagtaga gaatgcctta caaaatgccc agttacagcg tattgaggaa tcacaacctt      4020
     tcaacttgtg tgtctttaag acagctcagt taccaactgc tgtattgtgg caagatggac      4080
     cattattatg gatccatccc aatgcttctc cggcaagagt aatcgattgg tatcctaacg      4140
     ccgttgcgca acttgcgctt cgtggcttaa aagcagcagt cactcatttt ggacgagatc      4200
     ctaaattgct aattgttccc tatactgcca cacaagttca ggtccttgca gctacatctg      4260
     atgactgggc agtattagtc acctcctttt caggacaaat tgacaatcat tatcctagac      4320
     atccaatttt acaatttgcc ctgaatcagg ccatagtgtt tccacaggtg acagcaaaaa      4380
     acccgcttcc agaaggaatc atagtgtata cagatgggtc aaaaactggt gtaggcgctt      4440
     atgtgaccaa taacaaaata gtgtctaaac aatataatga aacttcacct cagattgtgg      4500
     agtgtttggt ggttttggag gtccttaagg ccttcccggg accgcttaac attgtgtcag      4560
     attcctccta tgtggtcaat gcagttaacc ttctagaggc tgctggggta ataaaatcat      4620
     ccagtaaagt cgctgatatt tttcaaaaaa tacaggctgt tttattacat aggagatttc      4680
     ctgtttatat cacccatgtt agagcacatt caggtctccc tgggcccata tccagaggca      4740
     atgatctcgc agaccgagcc accagggttg tggctgctgc cctttcatcc caagtggatg      4800
     ctgcaagaaa ttttcacaaa caattccatg tgacggctga aaccttgcgc cgttgctttg      4860
     cattgaccag aaaggaggct agggaaatag ttactcagtg tcaaaactgt tgccagttct      4920
     tgccagtgcc acatgtgggg gttaacccac ggggaattca accgctacaa gtctggcaga      4980
     tggatgtaac acacatttcc tcctttagga ggcttcaata cctgcatgtt tctgtggata      5040
     cttgttctgg tatcattttt gcctcgcctc ttacggggga aaaggcctca catgtaattc      5100
     aacattgcct tgaagcctgg agtgcttggg gacaacccaa aattcttaaa acagataatg      5160
     gaccggccta cacctctcaa aaatttcgac agttctgtcg ccagatgaat gtaactcatt      5220
     taactggttt gccatacaac cctcagggac aaggcattgt ggaacgtgcc caccgcactc      5280
     ttaaatctta cctaatcaaa cagaaagggg gagtcgacga ggctctgccc ttaacaccga      5340
     gagtggccgt ctctatggca ctctttactc ttaatttttt gaatcttgat gaacaaggcc      5400
     acactgcggc tgatcgtcac tgttcagaac caaacagacc tagagaaatg atcaaatgga      5460
     aggatgtctt aaccggaaaa tggagaggcc cggatcctat tttaataaga tccaggggag      5520
     ctatttgtgt ttttccacag gaagaagaca atcctctttg ggttccagaa cgcctcacct      5580
     gaaggatctc cccttcagaa gatgtggaca aaagagggaa cactgaaaca acgatggata      5640
     ctgacccttc tactggagat cctggttcct agtatatcag gggaattgcg ttgggtatta      5700
     tgtccacctt tccctgccca tgcctgtcat gcacagtgca caagtgagca gtttaagctt      5760
     atttaaagaa aagagagatt ttagaatctc tgctattata gttggcttgg tagcaacagc      5820
     agcaatagct gcctctatca ctgcttcggc ccttgccttg tctgctacgg ttcagacaat      5880
     gcaaaccatc aatgaccttt cggcaagagt gacatcggcc ctggacaggc aggccacggc      5940
     caactcccag atatagggag gcctcatgtt ggtaaaccaa cggatcgatc tggtccaaga      6000
     acaggtggat atcctgtggc aaatggctta gctgagttgc gaacataagc tgcctagcct      6060
     cggtatcacc tcagtacaat ttgagaattt tataagagca actaacctgt caaaggcttt      6120
     gtttcattat ttgttacaga attggaccat agaatttgaa cagacactcc gggagctgag      6180
     gatcgctgtc ttacaagtca attcgacacg tcttgacctg tcattgacgg aaggacctgg      6240
     atttctgcag cattctccta cttcaaggaa tgggtggggg tggatttgtt tggagtggct      6300
     gtgtatggtg gagtactgct cctactatgg atgatctgca aacttaaagc ccaaacaagg      6360
     agggacagga tggtagtaac ccaggcgctt gttgctttgg agcatggtgc ctcccccgat      6420
     atatgattat cgatacttaa gcaataggtc gctggccact cagctcttgc accccacgag      6480
     gctagtctca ttgcacggga tagagtgagt gtgcttcagc agcccgggag agttgtacgg      6540
     ctaagcactg cagtagaaag gctctgcggc ataaaatgag cctattctag ggagacatgt      6600
     catcttgtat gaaggttgag tgtccaagtg tccttccccc aggaaaaacg acacaggagc      6660
     ggaccaaaac ccctccgggt gacgagcctg ggaggaggtt ttgtgtaagg cccctatgct      6720
     tgcacactgg ggatttgacc tctatctcca ctctcagtac tgggtggcct gttgcttcta      6780
     aaataaaaga aaagggggag atgtgaggag ccgccctcac a                          6821
//
ID   MSTD        repbase; DNA   ; ROD   ; 406 BP.
XX
AC   .
XX
DT   07-FEB-2000 (Rel. 7.1, Created)
DT   07-FEB-2000 (Rel. 7.1, Last updated, Version 1)
XX
DE   Long terminal repeat - a consensus.
XX
KW   MaLR family; MSTC; MST subfamiy; MSTD.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-406
RA   Jurka J.;
RT   "MSTD.";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 406 BP; 99 A; 93 C; 90 G; 121 T; 3 other;
     tgctatggtt tgaatgtgtc ccccaaagtt catgtgttgg aaacttaatc cccaatgcaa        60
     cagtgttgag aggtgggrcc taataagagg tgattaggtc atgagggctc tgccctcatg       120
     aatggattaa tgccattatc acaggaatgg gttagttatt gtaggagtgg gttccttata       180
     aaaggatgag tttggccccc tcttgctctc tctctcacac tctcttgccc tttttctgcc       240
     tgccttctgc catgggatga tgcagcaaga aggccctnac cagatgcgcc agccccttga       300
     tcttggactt cccagcctcc agaactgtna gcaaataaat ttctgttctt tataaattac       360
     ccagtctgtg gtattctgtt atagcagcac aaaatagact aagaca                      406
//
ID   ORSL        repbase; DNA   ; ROD   ; 630 BP.
XX
AC   M26221;
XX
DT   30-APR-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Origin of replication-like (ORS8) region (a consensus).
XX
KW   Origin of replication; ORSL.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   287-482
RA   Rao S.B., Zannis-Hadjopoulos M., Price B.G., Reitman M.,
RA   Martin G.R.;
RT   "ORSL.";
RL   Unpublished (1989).
XX
RN   [2]
RP   1-630
RA   Rao S.B., Zannis-Hadjopoulos M., Price B.G., Reitman M.,
RA   Martin G.R.;
RT   "Sequence similarities among monkey DNA-replication ori-enriched
RT   (ors) fragments.";
RL   Gene 87, 233-242 (1990).
XX
RN   [3]
RP   1-630
RA   Jurka J.;
RT   "ORSL.";
RL   Direct Submission to Repbase Update (13-APR-1998).
XX
CC   [3] (Consensus)
XX
CC   This sequence is moderately repeated in human DNA.
CC   It shares ~200bp stretch of similarity with African
CC   Green Monkey origin of replication region (Acc. No. M26221).
XX
SQ   Sequence 630 BP; 183 A; 118 C; 135 G; 175 T; 19 other;
     ycccatacyg tttccrtcac trgtytgwgc accctctgca rggmagacag catgaytttt        60
     yatctttgaa tycyyaaaas ttagctcact gtgtgctcaa acgtgtattg aatgacagtt       120
     gctatatttg aggacbacat agattttggg gaagacggac aggcacacta gcagaaccat       180
     acgaaggcca ggatcagtca tgaccagggc tgcattatga cttgtgggcc ctgagcactt       240
     ttgcttttat gggccccttc ctccataaaa atattaaaaa ttatatttta tgactgcatt       300
     ggtataaaga tgagaatata atccaggctg aattaaaaca ttttcttaga ctctaaaatt       360
     tcattttttt ctgattttaa aagaaattaa aacattttya tggggcccta aagtattgtg       420
     ggccctaggc actgtgccta ctgtgcctaa tggataagtc nagcctgacc agggcactct       480
     ggtgtgaggt tgaagaaagg aaatttggaa caaagaagcc aagtgctctg gagaagcagg       540
     tgaaacttcc actgccgaac aaaatcagaa tgggagcagc catggttaat aaggttgtgg       600
     aagtttagas cttccagttc acttcmcctt                                        630
//
ID   L1MC5       repbase; DNA   ; ROD   ; 1351 BP.
XX
AC   .
XX
DT   14-MAY-1998 (Rel. 6.5, Created)
DT   23-JUN-2000 (Rel. 7.2, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MC5) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC5 subfamily; L1MC5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1351
RA   Jurka J.;
RT   "L1MC5.";
RL   Direct Submission to Repbase Update (05-MAY-1998).
XX
CC   [1] (Consensus)
XX
CC   Position 1 corresponds to pos. 1400 of L1MC4. Possibly 3' end of
CC   L1ME4.
XX
SQ   Sequence 1351 BP; 513 A; 205 C; 231 G; 383 T; 19 other;
     aaaaaaaaaa yacatttcta scctttccac tgaaaagncc tagaaacaat gactaatcca        60
     atagcaatga gtaccctyag gacccagatt gtggtctcta aataccattt cccactaaaa       120
     ggaaccaggg ctccttggag aaatggctaa ttccaggtct ggggcaggaa atgtacaaga       180
     tgagcctgga acatcttgtc ataccagata gcaaggaagc tataaaacta ctagggttgt       240
     gtcaaaagga ctcaggagcc aacttactgg ccaaagatgg gacaatttga gcatcaataa       300
     taactgcaat ttaacacatc aaatatrttt aaatccatga gtttataata aaaaaatcta       360
     attggtcacc tttggagtga tgctagggaa ccaactcatt attttgaaaa ctggtaaata       420
     aagggaaaga atcaagcatt tatcttgcct ttcctatata aactgtacct cwgggtaacc       480
     aaatagtwga tgagggaaat ttctctttat agaagtattc cagctaataa atgaagaaaa       540
     aattagaatt agaatatcac cattttgcaa cccctaatga attaatggat ctaggcaatg       600
     atcatcaatg gctgctaaca tcacaaaaac tarasatytg cctcctgatg gaartawaca       660
     acaccaccta tgaaatatta gtcttgccaa aaaaaaatca aacctgaatc tgatcaagcc       720
     tctagatcta actaccaatt tacaggaaat acagaggaca gaggaacatg ttaaatgaca       780
     ccatrgggat gcaatcagca aaatccagac tgtgggaaac tctacaggac aaatrttaac       840
     ttttcttcaa caaataaatt atgagaaaaa aaagatggaa gaagaaccta tagattaaaa       900
     gagacttaaa agacatatca accaattaca atgtatggac cttatttgga tcctgattca       960
     aamaaatrta aactataaaa atatatrtgt atacaattgg aaatttgaac actgactaga      1020
     tatttgatga tattaaggaa ttattgttat ttttaggtgt gataatggta ttatagttat      1080
     tttataaaat agtccttatc ttttagagat acatactgaa atatttatag ataaaatkat      1140
     atgatgtctg ggatttgctt caaaataatc caggagggag gaagtaggtg gagctataga      1200
     tgaaacaaaa ttggccatga attgataatt gttgaagctg ggtgatgggt atgtggaagt      1260
     tcattatact attctctcta cttttgtata tttgaaattt ttctaatwtt aaaaataaag      1320
     accaatttgt tggacattaa tttgttggca a                                     1351
//
ID   MER60       repbase; DNA   ; ROD   ; 837 BP.
XX
AC   .
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   5' part of L1M subfamily.
XX
KW   Repetitive sequence; LINE; L1M subfamily; MER60.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-837
RA   Kapitonov V.V., Jurka J.;
RT   "MER60.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   MER60 is the 5' part of one of the L1M subfamily.
XX
SQ   Sequence 837 BP; 294 A; 153 C; 177 G; 188 T; 25 other;
     tgcagrttgc tagtgccaga gggagcaaag aattgtgatt gtggatttta attgctggca        60
     gctccctgaa ggactcacaa gtcttttttt ctcggctgaa gtggttcaaa aacatttaaa       120
     ggcacatttg ctggagcaag ggacaacatg rgrcaagcaa yagatagacc aaaaagccta       180
     agaaggaaga gmtgagaaat aagatgcttg gggaaawaag ggctttgaaa agtccacata       240
     ttcctgggaa tctagaaggc catgcacatg tccagggctg gacacatgct cagaaaagac       300
     ctaagaaggc cctaagcttt cacctctggc tgaccttnag actctgtaca agcaggaagt       360
     gaaggctaag gcagagttgt aaactgcctt ggctgagtgt tgaaggaatg ccycaacaca       420
     cagmcaatct gcaaagacta ggagactttt tttttgtgtt tggtddtktt gttgttrttc       480
     caggtattta aggaaayctc tgtcaawyac tagctgacca ctaagctaay cgarcagaga       540
     cttcagtggc cacacatgac aaagaataca gactttacaa aattagttta gaaaagtcac       600
     taaacaaaca ayacaacagc amayaayaag caacaacaac aaaccctgga aaggggagag       660
     aatctgattt ccagagttgc cacattataw tatttaaaat gtccagtttt ttttttcaac       720
     arcaacaaaa attatgaggc atacaaagaa acaaagaaaa gtatggccca tacacaggaa       780
     aaagaaatta atagaaacta tccctgagga agcccagaca ttgracttac tagacaa          837
//
ID   MER44B      repbase; DNA   ; ROD   ; 719 BP.
XX
AC   .
XX
DT   18-AUG-1998 (Rel. 6.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER44B; MER44.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-719
RA   Naik A., Jurka J.;
RT   "MER44B.";
RL   Direct Submission to Repbase Update (AUG-1998).
XX
CC   [1] (Consensus)
XX
CC   Approx. 90% similar to MER44A and 80% relative to MER44C.
CC   Contains long insertions relative to both.
XX
SQ   Sequence 719 BP; 227 A; 115 C; 150 G; 213 T; 14 other;
     cagtagtccc tccttatcca tgggggatat gttccaagac ccccagtgga tgcctgaaac        60
     trtggatagt acygaacyct atatatacta tgttttttcc yatacatact tatgataaag       120
     tttaatttat aaattaggca cagtaagaga ttaacaatan taactaataa taaaatagaa       180
     caattataac aatatactgt aataaaagtt atgtgaatgt ggtctctctc tcaaaatatc       240
     ttattgtact gtactcaccc ttnttcttct tgtgatgatg tgagatgata aaatgcctat       300
     gtgatgagat gaagtgaggt gaatgatgta ggcattgtga tgtagcgtta ggctactatt       360
     gaccttctga tgtctgatga tatgtcagaa ggaggatcat ctgcttcagg tgatcctgga       420
     tcattgagcc atgacaatgt cgatggttgg atgtcaggag cagacaatgt cgatgactaa       480
     tgggtggrta gcatatacag cntggatacg ctggacaaag ggatgattca cgtcccaggt       540
     rggatggagc aggacagtgt gagatttcas ccatcatgct actcagaaca atacacaatt       600
     taaaacttat gaattgttta tttctggaat tttccattta atattttcag accacagttg       660
     acyatgggta actgaaacca cagaaagtna aaccayrgat aagggagaac tactgtaca        719
//
ID   L1M3_5      repbase; DNA   ; ROD   ; 3806 BP.
XX
AC   .
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   L1M3/4 LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; MER43; L1-43_5; L1M3_5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1719-1894
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive element (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328 (1993).
XX
RN   [2]
RP   1631-1894
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. thesis (USC 1995).
XX
RN   [3]
RP   1-2253
RA   V V., Jurka J.;
RT   "L1M3_5.";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [4]
RP   1-3806
RA   Smit F.A.;
RT   "L1M3_5.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [4] (Consensus)
XX
CC   5' end of L1, probably of the L1MB1-8 subfamilies.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
SQ   Sequence 3806 BP; 1296 A; 787 C; 873 G; 729 T; 121 other;
     agagcaagat ggcagaacag aatgctcnaa caattgcccc catyctryyc cnccacagga        60
     acaccaaatt gaacaactat ctacacaaaa wagcaccttc ataagaacca aaaatcannt       120
     aagcgatcac agtacctggt tttaacttca tatnactgaa agaggcactg aagagggtag       180
     gaaagacagt cttgaatcgc caacgccgcc cctcccccat cccccggcag tggccgcacg       240
     gcacggagag agaatccgcg cacttgggng agggagagcg cagcgattgt gggactttgc       300
     gttggaantc agtgctgccc tgtcanagcg gaaagcaaca ncgggcagaa ctcagccggc       360
     gctcatagag ggancattta gaccagccct agncagaggg gaatcaccca tcccagcggt       420
     cggaacctaa gttccggcaa gcctcgccac cgtgggctaa agtgcnntag ggtcctaaat       480
     aaacttgaaa ggcagtctag gccacaagga ctgcaattcc tgggcaagtc ctggtgctgt       540
     gccgagctaa gagtcagtgg acttaggggg cacacgacct agtgagacac yagccggggt       600
     ggccaaggga ntgcttgcgc cacccyctcc cycaacncca ggcagcacaa ctcgcagctc       660
     cgggagagac tccttccctc cgcttnagga gaggagaggg aagagtaaag aggactttnt       720
     cttgcaantc ggataccagc tcagccatag taggataggg caccgagcag agtnnwgagg       780
     ycccnattct aggccctagc tcccggatga catttctaaa cacaccctgg gccagaaggg       840
     aanctgctgc cttaaaggga agganccagt cctagcagga ntcatcacct gctgactaaa       900
     gagcccttgg gccctgaata atcagcagcg atacccaggt tagyactcgc cgtaggcctt       960
     gggtgagant ctgagacgtg ctggnttcag gtgtgacnca gcacattccc agctgtggtg      1020
     gctacgggga gagactcctt ctgcttgaga aaaggagagg gaanagtaaa ggggactttg      1080
     tcttgcagct tagntaccag cttggccaca gtggagtaga gcaccaagcg ggctcttagg      1140
     gtccccgatt ccaggccttg gctgttggat ggcatttctg gacctgccct gggccagagg      1200
     agagcccact gccctgaagg gagagtctca ggcctggcag cattcaccgc aagctgacag      1260
     aagagtcctt gggctttaag tgaacattkg cgrtagycag gcagtacttn ctgtgggcct      1320
     gcggcggtgg tngccatagg gagagnctcc tctgcttgtn gaaaggggag ggaagagtgg      1380
     gaagaacttt gtcttgtggc ttgagtgcca gctcagccgc agtagaacag agcaccgggt      1440
     agatttctaa ggtttccgac tccaggccct ggctcctgga tagcatcyct ggacgtgccc      1500
     ggggccagag agaactcacc accctgaagg gaaggataca agnctggctg gctttaccac      1560
     ctgctgattg tagagtcccg gggccttgag cgaacataag cagcggccag gcagtggtta      1620
     ctgcgggcct tgggcgagac ccagtgctgt gctggcttca ggtctgaccy agtacagtcy      1680
     cagtgrtggt ggccacaggg gtgcttgtgt cacccctccy ccagctccag gcagctcagc      1740
     acagagagag agacngagtt tgtttgrggg aaagtaargg aagagaacaa gagtctctgc      1800
     ctggtaatcc agrgaattct tccagatctt atccaagacc acnaaggcag tacctctacg      1860
     agtctgcaag agccacagta ttactgggct tggggtgccc cctaatgcag atacggccgc      1920
     agtgacaaaa aacttagatc acaacacyca agtcccttca aatacctgga aagcyttccc      1980
     aagaaggacg ggtacaaaca agcccagact gtgaagacta caataaatac ctaactcttc      2040
     aatgcccaga cacagacaaa catctacaag catcaacacc atccaggaaa acatgacctc      2100
     accaaatgaa ctaaataagg caccagggac caatcccgga garacagaga tatgtgacct      2160
     ttcagacaga gaattcaaaa tagctgtttt gaggaaactc aangaaattc aagataacac      2220
     agasaaggaa ttcagaatyc tatcagataa atttaacaaa gagattgaaa taattaaaaa      2280
     gaatcaagca gaaattctgg agctgaaaaa tgcaattgac atactgaaga atgcatcaga      2340
     gtytcttaac agcagaattg atcargcaga agaaagaatt agtgagcttg aagacaggct      2400
     atttgaaaat acgcngycag aggagacaaa agaaaaaaga aaanaatgaa gcatgcctac      2460
     aagatctaga aaatagcctc aaaagggcaa atctaagagt tagtgacctt aaanaggagg      2520
     tagagagaga gataggggtr aaagtttatt caaagcnata ataacagaga atgtcccaaa      2580
     cctagagaaa gatatcaata ttcaagtaaa agaagnttat agaataccaa gcanatttaa      2640
     cncaaagaag actacctcaa gacatttawt aatcaaactc ccaaaggtca aggataaaga      2700
     aaggatccta aaagcagcaa gagaaaagaa acaaataaca tacaatggag cnccgatata      2760
     gtctggcagc agacttntcg gcggaaanct tacaggccag gagagagcgg catgacatat      2820
     ttaaagtgct gaagaaaaaa aaaaaaactt tnatcctaga ntagcgtntc cagngaaaat      2880
     atccttcaaa catgaargag aaataaagac tttcccagac aaacaaaagc tgagggattt      2940
     cntcaacacc agacctgtcc tacaagaaat gctanagnga attcttcaat gtgaaagaaa      3000
     aggacgttaa tgannaataa naaatyatct gnaggtrcaa aactcactga taatagtgcg      3060
     cagaaaaaca naatattata acantgtaat tatggtgtat aaactactct tragtagaaa      3120
     gactaaaaga tgaaccaatc aaaaatanta actanaacaa cttttcaaga catagacagt      3180
     acnntaagat anaaatagaa acaacaaaaa gtttaaaaat tggnggacga agttaaaatg      3240
     tagagttttt attagttttc ttnttgttnn ttgrtttttt tnaanttatg taatnagtgt      3300
     tattatcagt ttaaaatata ggatattatt tgcaagcctc atggtaacct caaatcnaaa      3360
     aacatacaac ggatacacaa aaataaaaag caagaaatta aaacatatca ccagagaaaa      3420
     tcaccttcac taaaaggaag acaggaagga aggaaagaan aaagagaaga ccacaaaaca      3480
     accagaaaac aaataasaaa atggcaggag naagtcatta cttatcaata ataacattga      3540
     atgtaaatgg actaaactct ccaatcaaaa gacatagagt ggctgaatgg atataaaaat      3600
     aagacccaat gatcggtcgc ctanawgwaa cacacttcac ctataaagac acakatagac      3660
     tgaaaataaa gggatgaaaa aagatatttc atgcnaatgg aaaccaaaaa agagnaggag      3720
     tagctatact tayatcagan aaaatatatt tcaagacgaa aactataaga agagacaaag      3780
     aaggtcacta tataatgata aaggag                                           3806
//
ID   MLT1E       repbase; DNA   ; ROD   ; 568 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1e
DE   subfamily) - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MLT1e subfamily; MLT1E.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-568
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 568 BP; 146 A; 134 C; 137 G; 129 T; 22 other;
     tgtggtaggc agaattctaa ratgmtccca atgatcctcg cctcctggcg taatctcctt        60
     gagtgtgagt aggacctgtg acttgcttct agccaacgga atatggcaaa ggtgatgara       120
     trtcacgtga ttacgcgtac gtgattatgt aasattcagt ctttgmcgtc attcttgccg       180
     agagactctc ctsctggtyt tgaagaagta agctgccacg tcatgagnnn ncnnannaga       240
     rygccgcaag gcaagggnnt ctagagctga gagtcgccct tactgatggg cagcaagaag       300
     caagccacct cagtcctaca gccgcaaaga actgaattct gccaacaacc tagtgagctt       360
     ggaagcagat cctgcccagt cgagcctcca gatgagancg cagccctggc tgacgccttg       420
     actgcagcct tgntagacct tgagcagagg acccagctaa gccgtgccca gactcctgac       480
     ccacagaaac tgtgagataa taaatgtgtg ttgttttaag ccgctaagtt tgtggtaatt       540
     tgttacgcag caatagaaaa ctaacaca                                          568
//
ID   TIGGER2     repbase; DNA   ; ROD   ; 2708 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 5, Created)
DT   19-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   Autonomous DNA transposon.
XX
KW   Repetitive sequence; Tigger2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2708
RA   Smit F.A., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [1] (Consensus)
XX
CC   24 bp terminal inverted repeats, TA target site
CC   Includes MER28 (bases 1 to 59; 2333 to 2708).
XX
SQ   Sequence 2708 BP; 884 A; 511 C; 555 G; 701 T; 57 other;
     cagttgaccc ttgaacaaca cgggtttgaa ctgcgcgggt ccacttatac gtgrattttt        60
     tycaataaat atattggaaa aawttytgga gatttgcaac aatttgaaaa aactcgcaga       120
     cgaaccgcgt agcctagaaa tattgaaaaa attaagaaaa aggtatgtca tgaatgtata       180
     aaatatatgt agatactagt ctattttatc atttactacc ataaaataya cacaaancta       240
     ttataaaaag ttaaaattta tcaaaactta yayayayact tacagactgt acgtggtacc       300
     attcgaagtn gagagaaata taaacaaacn taaagatgca gtattaaatc acaactgcgt       360
     aaaattaact gtagtacata ctatactacc gtaataattt tgtagccacc tcctgttgct       420
     attgcagcga gctcaagtgt tgtgagtacc tgcttaaaac gctskgtgat gctaatcatc       480
     tccgcgcgag cagttyatct ctccagtaaa ttgcgtattg cagtaaaaag tgatctctca       540
     cggttctcgc gtatttttca ttgtgtttar tgcaatattg taaaccttga ataacaccat       600
     gggacccata cgaagtgcca ctagtgatgc tggaagtgct cccaagaagc agagaaaagt       660
     catgacatta caagaaaaag ttgaattgct tgatatgtac catagattga ggtctgcagc       720
     tggggttgcc tgccatttca agayagatga atccggcgta aggaccgttg tmaaaaaaga       780
     aaaggaaatt cgtgaaracc gtcgctgcag ttatgcccag caggcacaaa aacttgtnac       840
     tttttgcgaa ataccttttt atgttgtatt gaaaatgcag cttttntgtg ggtgcaggat       900
     tgctataaga aaggmatacc tanagactct aatatgatta gagaaaaagc gaagtcatta       960
     tgtgannact taaagcaaaa rraagatgam rgatctaaag ctgganaatt taatgccagc      1020
     aaakgatggt ttgacaattt tagaaagarg twtggcttaa aaaatktcaa gakaacagga      1080
     gaagcasytt ctgctgacca agagacagca gacgagttnc cagatgccat taacaaaatc      1140
     attgaggaga aaggatatct gcctgaacag gtttttaatg cagatgarag tgccctattc      1200
     tggggggaaa aaatgccaca aagracattt attagtaagn aagagaagcg agcaccagga      1260
     tttaaggcar gaagggatag gctaactcta ctgttttgtg caaatgcagt taggtttatg      1320
     atcaggactg cccttatcta taaagctgct aacccccgag ccttgaaggg aaaagataaa      1380
     cgccagctgc cagtcttttg gttgtacaac aagaaggcct ggacaacgag aacccttttt      1440
     ctggattggt tccattkatg ctttgtccct gawgtcagga agtaccttgc cagtaagrga      1500
     ctgcctttta aagttctttt gatattggac aatgcccytg gccacccaga accccatgag      1560
     ttcaacaccg aaggtgtcga agtggtctac ttgcccccaa acacaacgtc tctaattcag      1620
     cctctagatc agggggtcat aaggaccttt aaggctcatt acacacggta ctctatggaa      1680
     aggattgtca acgctatgga agagaacccc gatagaraga acatcatgaa agtctggaag      1740
     gattacacca ttgaagatgc cattgttrtt atagaaaaag ccgtgaaagc catcaagccc      1800
     aaaacagtaa attcctgctg gagaaaactg tgtccagatg ttgtacatga cttcacagga      1860
     tttacgacag agccaatcaa ggaaatcatg aaagagattg tggatatggc aaaaaagttg      1920
     gggggtaaag ggtttcaaga tgcgaatctt ggagaaattc aagagcwaat agacaccaca      1980
     ccagaggaat taacagaaga cgacttgatg gagatgagtg cttccgaacc agtgccagac      2040
     gatgaggaag aagacatnga agaagcagtg ccagaaaaca aattgacatt agacaatctr      2100
     ggcagaaggg ttccaattat tcaagactgc ttttgacttc ttttacaaca tggacccttc      2160
     tatgatacgg gcactgaaac taaagcaaac agtggaagaa ggattggtay tatacagaaa      2220
     catttttaga gaaatgaaaa ggcaaaaayr tcagacagaa attacgatgt atttccgtaa      2280
     agttacaccg agtgtgcctg cctctcctgc ctccccttcc acctcctcca cctcttccac      2340
     ctctgccacc ctgagacagc aagaccaacc cctcctcctc ctcagcctwc tcaatgtgaa      2400
     gacgacgagg atgaagacct ttatgatgat ccacttccac ttaatgaata gtaaatatat      2460
     tttctcttcc ttatgatttt cttaataaca ttttcttttc tctagcttac tttattgtaa      2520
     gaatacggta tataatacat ataacataca aaatatgtgt taatcgactg tttatgttat      2580
     cggtaaggct tccagtcaac agtaggctat tagtagttaa gttttkgggg agtcaaaagt      2640
     tatacgtgga tttttnactg cgcggggggt cagcgcccct aacccccgcg ttgttcaagg      2700
     gtcaactg                                                               2708
//
ID   MLT1E1      repbase; DNA   ; ROD   ; 641 BP.
XX
AC   .
XX
DT   03-SEP-1998 (Rel. 6.6, Created)
DT   03-SEP-1998 (Rel. 6.6, Last updated, Version 1)
XX
DE   LTR from retrotransposable MaLR element - a consensus.
XX
KW   MaLR family; MLT1E; MLT1; MLT1E1.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-641
RA   Jurka J.;
RT   "MLT1E1.";
RL   Direct Submission to Repbase Update (SEP-1998).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 641 BP; 176 A; 131 C; 162 G; 158 T; 14 other;
     tggtaggcag aattctaaga tggcccccaa gattcycacc ccctggtatc atatrccctg        60
     tataatcccc tccncttgag tgtgggcagg atctgtgaat acgatgggat atcactcctg       120
     tgattaggtt acattatatg gcaaaggtga agggattttg cagatgtaat taaggttcct       180
     aatcagttga ctttgagtta atcaaaaggg agattatcct gggtgggcct gacctaatca       240
     ggtgagccct ttaaargagg ytctagaagt cagacatgga agaagtcaga gagattcaaa       300
     gcagcagaga tgctctcctg ctggccttga agaagcaagc tgccatgttt tgtggagagg       360
     gccatatgnc agggantggn gagcagcctc taggagcnga agtcctcagt cctacaacca       420
     caaggaaatg aattctgcca acaaccngar tgagcttgga agaggatcyt gagcctccag       480
     atgagaaygc agccccagct aacaccttga tttcagcctt gtgagaccct gagcagagga       540
     cccagctaag ctgtncccag attcctgacc catagaaact gtgagataat aaatttgtgt       600
     tgttttaagc tgctaagttt gtggtaattt gttatgcagc a                           641
//
ID   ZOMBI       repbase; DNA   ; ROD   ; 2806 BP.
XX
AC   .
XX
DT   13-JAN-1998 (Rel. 6.4, Created)
DT   28-JUN-2000 (Rel. 7.2, Last updated, Version 3)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   TIRs; DNA transposon; MER46; TA target; ZOMBI; TIGGER4.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2710
RA   Smit F.A., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RP   1-2710
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit F.A.;
RT   "Identification of new medium reiteration frequency repeats in
RT   the genomes of primates, rodentia and lagomorpha.";
RL   Genetica 98, 235-247 (1996).
XX
RN   [3]
RP   1-2806
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?.";
RL   Direct Submission to Repbase Update.
XX
RN   [4]
RP   1-2806
RA   Smit F.A.;
RT   "ZOMBI.";
RL   Direct Submission to Repbase Update (JAN-1998).
XX
CC   [3] (Consensus)
XX
CC   23 bp terminal inverted repeats and TA target site [1,2].
CC   ZOMBI is an autonomous DNA transposon (its non-autonomous
CC   elements have been identified as ZOMBI_A (MER46 [1,2]) and
CC   ZOMBI_B.
CC   Orientation of ZOMBI has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [3].
CC   It has been shown [3] that neurolepsy-related Jerky gene in human
CC   and mouse is a recruited transposase from ZOMBI.
XX
SQ   Sequence 2806 BP; 912 A; 540 C; 600 G; 754 T; 0 other;
     caggttgagc atccctaatc caaaaatccg aaatctgaaa tgctccaaaa tctgaaactt        60
     tttgagcgct gacatgacgc cacaagtgga aaattccaca cctgacctta tgtgacgggt       120
     cacagtcaaa acgcaggtgc acaacacaca gtttattcgg cgtccccaag ggaaaaaaga       180
     ccctcccagc ccccttcagc tgcggtatat cttttccgcg cacacccaga ttcccccatg       240
     caagcacgcc cacaaagggt aataaaatgg cacgtgtgca ggctggacac accaacggca       300
     ggttccccac aatgccccca catggggtca agacctacgt gcattactca ctgtgttttt       360
     ttgcttattc tctgctctgt ggtgtaaaga tattgttgaa aatgtcaaaa aggcctgtag       420
     atacccctgt gagtaacaat gataagaaaa aggaagcatt tatgtttatc tatagcacag       480
     aaaagtcaag ctgttggaga aactggacag tggtgtaagt gtgaaacgtc ttacagaaga       540
     gtatggtgtt ggaatgacca ccatatatga cctgaagaaa cagaaggata aactgttgaa       600
     gttctatgct gaaagtgatg aacggaagtt aatgaaaaat aaaaaaacac tgcataaagc       660
     taaaaatgaa gatctcgatc gtgtattgaa agagtggatc cgtcagcatc acagtgaaca       720
     catgccactt aatggtacgc tgatcatgaa acaagcaaag atctgtcaca atgaactgaa       780
     aattgaaggg aactgtgaat attcaacggg ctggttgcag aaatttaaga aaagacacgg       840
     cattacattt ttaaagattt gtggtgataa agcatctgct gatcatgaag cagcggagaa       900
     attcattgac gagtttgcca agatcatcgc tgatgaaaat ctgatgccag aacaagtcta       960
     taatgctgat gaaacatcac cgttttggtg ttattgcccc agaaagacac tgactacagc      1020
     tgatgagaca gcccctacag gaattaagga tgccaaggac agaataactg tgctgggatg      1080
     tgctaatgca gcaggcacgc ataagtgtaa acttgctgtg ataggcaaaa gcttgcgtcc      1140
     ttgctgtttt caaggagtga atttcttacc agtccattat tatgctaaca aaaaggcatg      1200
     gatcaccagg gacatctttt ctgattggtt tcacaaacat tttgtaccag cggcttgtgc      1260
     tcactgcagg gaagctggac tggatgatga ctgcaagatt ttgttattcc ttgacaactg      1320
     ttctgctcat cctccagctg aaattctcat caaaaataat gtttatgcca tgtactttcc      1380
     cccaaatgtg acttcattaa ttcagccatg tgaccagggt atctttagat caatgaagag      1440
     taaatataaa aacactttct tgaacagcat gctagcagca gtgaacagag gcgtgggtgt      1500
     ggaaggtttt caaaaggagt ttagcatgaa ggatgccgta tatgctgttg ccaacgcttg      1560
     gaacacagtg actaaagaca cagttgtgca tgcctggcac aacctctggc ctgcgactgt      1620
     gttcagtgat gatgatgaac caagtggtga ctttgaagga ttctgtatgt caagtgagaa      1680
     aaaaatgatg tctgacctcc ttacatatgc aaaaaatata ccttcagagt ccgtcagtaa      1740
     gctggaagaa gtggatatta aagacatttt taacatcgat aatgaggctc cagttgttca      1800
     ttcattggaa gaagtggata tcaaagaagt cttccacatc gataaatgca ttaccagttg      1860
     ttcaaccatc accggatggt ggaatagccg aaatggttct gaatcaaggt gattgtgatg      1920
     atagtgatga tgaagatgat gacgttaaca ctgcagaaaa agcgcctata gatgacatgg      1980
     tgaaaatgtg tgatgggctt attgaaggac tagagcagcg tgcattcata acagaacaag      2040
     aaatcatgtc agtttataaa atcaaagaga gacttctaag acaaaaacca ttgttaatga      2100
     ggcagatgac tccggaggaa acattttaaa aagccatcca gcagaatgcc tcctcatccc      2160
     tagaggaccc acttcctggt ccctcaactg cttctgatgt ttcttctcac ttagaaaaca      2220
     aaaaccaaaa agcaaaaaaa atacagtgta cagtaacctt ttaatcaaaa cacagcatcg      2280
     tagatggaga ctgaaagcct gccattgttt gttgttgctg ttgtttaaca gctgatacag      2340
     gtattctggt gatgctactg tgctgcttag ttaccctgaa cacatttttt tttcactgta      2400
     ttaatggtat gtcatatttt ttactgttaa gtacttatgt gtgaataagt gtaagaaaat      2460
     gattgcttat cggtagcata taaattcaga gtcaggaatg atggtgatgc caaacaacca      2520
     cagattgtcc acatgggtgg ctgagatagt gacacctttg ctttctgatg gttcaatgta      2580
     cacaaacttt gtttcatgca caaaattatt aaaaatattg tataaaatta ccttcaggct      2640
     atgtgtataa ggtatatatg aaacataaat gaattttgtg tttagacttg ggtcccatcc      2700
     ccaagatatc tcattatgta tatgcaaata ttccaaaatc tggaaaaaaa tccagaattc      2760
     aaacacttct ggtcccaagc atttcggata agggatactc aacctg                     2806
//
ID   L1MD_5      repbase; DNA   ; ROD   ; 1604 BP.
XX
AC   .
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Partial L1MD LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1MD_5; MER79; L1M6_5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   500-1
RA   Smit F.A.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [2]
RP   1-1604
RA   Jurka J., Walichiewicz J., Kapitonov V.V.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (28-JUL-1997).
XX
RN   [3]
RP   1-1604
RA   Smit F.A.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (19-AUG-1997).
XX
CC   [3] (Consensus)
XX
CC   5' end of L1M subfamilies.
CC   Originally expanded to 1619 bp and classified as a 5'-portion of
CC   L1
CC   (Jurka et al. [2]). A shorter version submitted by A.F.A. Smit on
CC   Aug. 6 - deposited in the Appendix. Minor refinements of the 1619
CC   bp consensus [2] worked out by A.F.A. Smit (August 19, 1997 [3]).
CC   Replaces MER79 [1] and L1M6_5 [2]. Average divergence from
CC   consensus is
CC   24%. Appears to be 5' end of L1MD1 and L1MD2 subfamily LINEs.
XX
SQ   Sequence 1604 BP; 524 A; 412 C; 387 G; 270 T; 11 other;
     ttaaaaacaa agcgggagac ttccgcttcc gggaagatgg agtagacgta cttttcccta        60
     ttcctcccgc taagtacaac taaaaaccct ggacattata tataaaacaa acataagaag       120
     actctgaaag gtggagagaa gaaggcagac cggctaggga cctcgggacc cgaggaacga       180
     cacggtagtg agttccctgg gttttctttt tgcctcatat atcccagact tggagctgaa       240
     gaagccggca acccggaaac gccaacgggc acagacaaaa aaagccccaa caaaagcctg       300
     ctctctctag ccaaaggacc aggaaagggg cagcctagca agacagaaaa cttttagaca       360
     ataaccgctc tactccagcc aaacaccaca gaaaaaactg tggccccacc cccacccacg       420
     ccagcaaagg ccgagtgggg agcctagact tccaccctca ccaggctgta acgaggcgcc       480
     ccaacacctc caccgggatg gtgtcagaga aggccaagta gggagctggg actttcatcc       540
     ccgccaggcg gtaatgaggc ccmccttccc cttgccmctg cggtgtcagt ggagaccacg       600
     tggggagcct ggacttccac ccccacccgg cagtaatgag gcgcccctcc ccctccctac       660
     tggggtggtg tcagaggagg cctagtggag agtcgggact ttcaccaccg cccagcggta       720
     atgaagccac ctcctcctct tgccmccatg gtgtcagtgg aggccacgtg gggagcagta       780
     atgaggcact cctacccctc ccagccaggg aggtatcagc ggaggcctag tggggagccg       840
     aactcccacc cccgcccagc agtaacgagg agcccctccc tcacctcggg tgtcaacgga       900
     ggccgagtgg ggaacctgga cttctacccc cacctggcag taatgaggca gcgcccctnc       960
     ccctcycctg ccggagcggt gtcagaggaa gccggctaaa acagaaggtt taaataagat      1020
     ccagagtctc ataacataat acccaaaatg tccaggtttc aatcgaaaat cactcgtcat      1080
     accaagaacc aggaaratct caaactgaat gagaaaagac aatcaataga cgccaacacc      1140
     gagatgacag agatgttaga attatctgac aaagatttta aagcagccat cataaaaaat      1200
     gcttcaataa gcaattacga acgtgcttga aacaagaraa aagtagaaag cctcagcaaa      1260
     gaaatagaaa gtctcagcaa agaaatagaa gatataaaga agaaccaaat ggaaatttta      1320
     gaactgaaaa atacaataac cgaaataaaa anctcaatgr atgggctcaa tagcagaatg      1380
     gaggggacag aggaaagaac cagtgaactt gaagatagag caacagaaat tacccattct      1440
     gaacaataga gagaaaatag attggaaaaa aaaatggaca gagcctcagg gacctgtggg      1500
     actataacaa aagatctaac attcgtgtca tcggagtccc agaggagagg aaaaagagrr      1560
     tagtatttga agaaataatg gctgaaaatt tcccaaattt ggca                       1604
//
ID   RLTR13B3    repbase; DNA   ; ROD   ; 943 BP.
XX
AC   .
XX
DT   30-JAN-2004 (Rel. 9, Created)
DT   30-JAN-2004 (Rel. 9, Last updated, Version 1)
XX
DE   Mouse long terminal repeat - a consensus.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERVK; LTR;
KW   RLTR13B3.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RA   Karolchik D., Baertsch R., Diekhans M., Furey S.T., Hinrichs A.,
RA   Lu T.Y., Roskin M.K., Schwartz M., Sugnet W.C., Thomas J.D.,
RA   Weber J.R., Haussler D., Kent J.W.;
RT   "The UCSC Genome Browser Database.";
RL   Nucleic Acids Res 31, 51-54 (2003).
XX
RN   [2]
RP   1-943
RA   Pavlicek A., Jurka J.;
RT   "RLTR13B3 - a subfamily of LTR retrotransposons.";
RL   Direct Submission to Repbase Update (JAN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the UC Santa Cruz
CC   genome annotation. RLTR13B3 is ~93% identical to RLTR13B4. The
CC   subfamily is very young, since individual copies share 97-98%
CC   identity with the consensus. TDSs are 6 bp long.
XX
SQ   Sequence 943 BP; 236 A; 224 C; 195 G; 288 T; 0 other;
     tgctacgctc tctggtcgag tcaactggac aagccgagag gcttaaaagt cactcatgag        60
     gcaaaagagt ttcaaggaag ctctcctcct ggagtctagc gttccctacc catacagtaa       120
     tttttcattc ccgcgttcca ttcccgcgtt agtctagtgt atggatccac gtgctctctt       180
     tcatatattt tcctatcata agtgcctttt aagattgaat tctgacatag ctaaagccgt       240
     ccgccagtgt tccaacagtc ctagttcgtc cttagcaaga ccttgggctt ggaattcagt       300
     actgcccctg gtattacact atctctttga gtaaaagtta ggtcactgcc cttcacagga       360
     atttaccatc actaaggaag aaagaagttt ctgaccgtag gagaaaccag aatagatatt       420
     tagaattata gctgagttac acctatctat atacaggaat ttacaatggt ttagggaagt       480
     agattccggc tgtggtttta gagtattgca ttattcatga gatggttagc tagaacggaa       540
     ctccctagtt agaaccatga cttgggtgtg aaagcccttg ccctaggagt gaaaagttct       600
     cacacctggc ttctaagact atagctgacc ttagataggg ctgactctgt ctcagttatt       660
     ttattgccca gttcctgcca gtctttgcgt tttcatttcc tctgttctgt gtaagagtca       720
     ttaagcatcc ggttacctca tttgtacctt tgtgggtatg tcacccaaac taccttgttg       780
     tcttctgcat aaaaagtctg atgttcgatt tgaaaaatta cattcagatt cacacacaaa       840
     ctctccctgt gtgtgtgtct gtctgtcatt catccacgct ttgcccaccc gcgtcgagag       900
     accccgttcc acgcagacac agggacccag aaggtctgcg gca                         943
//
ID   MER70I      repbase; DNA   ; ROD   ; 5023 BP.
XX
AC   .
XX
DT   29-AUG-2000 (Rel. 7.4, Created)
DT   29-AUG-2000 (Rel. 7.4, Last updated, Version 1)
XX
DE   MER70I is an internal portion of the MER70 endogenous retrovirus
DE   - a consensus.
XX
KW   MER70A; LTR retrotransposon; endogenous retrovirus; env; RT;
KW   MER70B; ERVL group; int; MER70I.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-5023
RA   Kapitonov V.V., Jurka J.;
RT   "MER70I.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   MER70I is an internal portion of an endogenous retrovirus flanked
CC   by the long terminal repeats MER70A and MER70B.
CC   There are about 100 copies of MERV70I survived in the human
CC   genome. They are ~80% identical to the consensus sequence and
CC   belong to two major subfamilies.
CC   MER70I encodes the reverse transcriptase, integrase and env
CC   proteins. It is related to the ERVL, HERVL, MERVL-like
CC   retroviruses:
CC   MER70I 1019 1729 ERVL 2304 3014 d 0.61
CC   MER70I 1730 2285 HERVL_40 2374 2929 d 0.62
CC   MER70I 2334 2725 HERVL_40 2982 3369 d 0.63
CC   MER70I 2733 3028 HERVL_40 3770 4068 d 0.61
CC   MER70I 4149 4264 MER51I 6384 6499 d 0.65
CC   MER70I 4474 4638 MER57I 6517 6678 d 0.65
CC   Its env-enoding DNA portion (position 4180-4780) is similar
CC   to env-like portions of MER57I and MER51I that belong to the
CC   MER4I-group of retroviruses related to ERV1 class.
XX
SQ   Sequence 5023 BP; 1261 A; 1259 C; 1377 G; 1126 T; 0 other;
     aaattggcgc agcgagcagg gtccggtctg acagaaccat ggcttattgg cgaagcggga        60
     ggggcgatac cccccagtac ccggcccagg gcggagacat cagcctgggg gtgcaggggc       120
     tggacatgca gctggatgtt ttatggggaa ggaggggtga taagtgggac atagtctccc       180
     cacctccccc gcagatgtga gtgagctggc tgcatggact gaggcagaga gaaaggaatg       240
     tggaaacagg agagagcagc gcacgatccc ctggttgttg ggcacttatg tgatcgctca       300
     ttcctggggc cggagagctc gggaagtggg tactcagatg gaccctgagg cacctgagag       360
     ggaattagaa agaggtcctc agatggtccc tgaggcatct gagagggaac caacacgtac       420
     aatgcgggcc ttcacagaaa gggagactca ctatctaaag gacagatatg gagaaaggcc       480
     agggaagtct tatgcagcct ggttggtgtg tttgtttgat aaagggacat tgcagatcca       540
     aatgtctcag gctgaatggc gcagttagga atggggccaa ggtctccggg tccccaccgg       600
     aggccagtgg ccctatactc ctgtcaagat aaaaggagaa aagaaaggaa ttcagacttt       660
     tctggggttc ttggatactg gagcccacat gacaatattt ccaggtcccc ttaggggaaa       720
     aattaaactg atgacatcgg gaggtttggg gacaaacatg gtgacccatg gtgcttattt       780
     gcttatggtg cttatctgct tgtgggtggg gccctttggg ccatttcggg tgccagtgac       840
     catggttccc accgctgagt gcattatagg cattgacatt ttggctgctt gtggcacaga       900
     acatcaccgc tgcctgaggg ggtatgcccc ctcacagcta agaattcgag ccataacagt       960
     ggggcatatc cactcctgcc tgccacctaa gctacccaag tcccaatggg ttattcaaca      1020
     aaagcagtac tgcatactaa gtggagaaaa ggacattact ttgttaattc aggacttgct      1080
     acagataaaa atgttacaaa ccaccctgtc acaatgtaac agcccagttt ggctggtcaa      1140
     aaaggccttc ggggcatgga gactaacaat ggactgtcgc aggctgaatg ctgtagtaga      1200
     cctattgaca ctcgtggccc agatatcacc acagtaattg aacacatcat ggaggcttcc      1260
     aaccaatggt atgatgcagt tattgatctg gctaatggat tcttctcaat ccctttgagg      1320
     gataagggca gagatcaatt tgtattcaca tggcaaagta tacaatatac atttacagtg      1380
     ctgccacagg agtatttgaa ctcacctgcc atatgccacc agtgggtagg atgggatttc      1440
     gccactgtgc ttttgcctaa agtggtcatg tgcattcatt acataggtga catccttatt      1500
     gtggcccttg atgatccgat cacacaagag gccttggact tgatggtcac agggacgtga      1560
     caagcagact gggaagttaa ccctaacagt cctgggatca gccaaactgg tgaccttttt      1620
     caaggccact tgggcgggaa gccaaagaag tatcccagat acagtcaagc aaaaattgtt      1680
     ggccctggcg gcatccacta ataaaaagga ggcccaacag ctggtaggcc tctttgggta      1740
     ctggagacag catatacctc acctgggtgt tcttttggcc cccttagtca aggtgaccaa      1800
     caaagccgcc aactttgaat ggggcccttt gcaacagcag gccttggaag ccattcaaca      1860
     agtcgtggcc caggcactgc ctttaaaacc tttacagcct gctagcccga tggaattaca      1920
     ggtgtccgca acctccatgc atgctgattg gagtctgtgg caacagaaaa ctgccactgg      1980
     ggtgcaccag cctctcagat tttggacaca taagttgcct gaggcagcca ccagatatac      2040
     ctcttttgaa tggcaactcc ttgcttgcta ttgggcactg gtggagactg agcatcttac      2100
     ggccggagcg ccacgtgtga cgctgcaacc tgaactgccc attctcactt gggtgcttac      2160
     aaaccccacc agtaaaattg gacaggctca acagagctca attatcaaat ggaaatggta      2220
     cattcaagat cgggcccagc caggacccca agggaccagc gggctccatg aacaaatggc      2280
     tagcttacca gaagggacca agcgacccgt aggggatgct ttggctcctc ctgtggctac      2340
     ctggggccca agattcagag acatgcctac cgacggtatg gcatggggtt tactgacggc      2400
     tctgcgaaac aacaagccag tgggtccact gggctgtggc caccatccag ccagtggatg      2460
     gccatctttt gactgagact ggacatggac gttctgccca atgggccaaa ctacatgcag      2520
     tggtgatggc catgcaggcc gcccctacca ccatatcttg ctacattttc actgactcat      2580
     gggccattgc caacagccta gccatctggt caggagaatg gcaactgagt gactggacta      2640
     ttaaaggatc ccctgtgtgg ggacaaggac tatggcaaca gcttgctgcc tggaagggac      2700
     aaatatatgt cactcatgtg gatgctggga ctaccatggc cacccttgag aggaatttat      2760
     gtcatgtttt tggatacccc atgggacttc actctgacca aggaacatcc ttcactgccc      2820
     aagcaacatg acaatgggca cactctcatg gaacacgatg gactttccat gcaccctgtc      2880
     atccacaggc caatggagct attgaacgat ggaacagccg actcacacag caactgaaga      2940
     aaggacatca agacggcctg ctagtggggt ggtaccccca tctgactagg gcaatatgga      3000
     cactaaacac tgcactccaa tgcaagggaa acacggcact gcagcgcatg ttgagaaaca      3060
     ctgagcttgg tgggggtgga ggtggaccag gcagccgcct gattaggctg cgcctgcgaa      3120
     atcccaatct cagtgttccc aaccattctt tttccttttt ccctttacag tgcacgtcct      3180
     gggggtggtt tgcggttcag gccgccatag taccccagac agggcccccc gactctaatc      3240
     tggaggcgat gcttcccctg ggtgcctccc ttctatggga tcccacagga gtgggggacg      3300
     ggaccaagga ataccagggt gctagggtcc ctctagtggc gccggggaca tctgatcctt      3360
     ccagtcgggt gggtgatgtt atcagacatg tcaagtttgt acaggacgtg acctcccttc      3420
     ctggactgga cgactgaggc tgaaaggtct gggtcaagca acaagggcaa tggtgcccac      3480
     agaggtagta gcctcaggac agggacagac agactgggtc gctacaccaa ctcagcccaa      3540
     cccctatctg ataggtaggg aacacctgag accctggaag ggatgggggt ggggcactaa      3600
     cctgtcagtc tgctttttcc acaaggacgt ggcagcagag gcctggaagc ataacgcctt      3660
     tgttaggctc ttccaagctg tggccaccgc gggtaacctg acaaaatgct ggatctgcca      3720
     tcccggacct cattctgtca cagaccagag ggaccctctc atcctgccag tggtaaacta      3780
     caccagcatt cctaatgcca cagtgtacac caacagaacc cgagccctgg cttaccgagt      3840
     gaggatctgg cacctgccac atgggaggga accggaggtg ccctgtttta acttaactga      3900
     cttaaggtgg caaaatgtca cgaccacaac taacaaaacc ttggtgggct ggtactttga      3960
     cgcaccacac tcctttgatt acatggacga gaagtgtccc agtggcgacg acgaaaacaa      4020
     ggaccggact attgctagcc ctctgtgtag gggcttcatg aacaatattg tatggggaaa      4080
     actgagctca tgcaactatg ccatcaatga gacttggctg gtgaatgcca atgcctccat      4140
     acccatgaat gggtcactga acaataaaat gggaaagggt gtgctgtgtg cacccgaggg      4200
     ctacatcttt ctctgtgggc ggtccgggag tgacccaaat acgggatggg caatgtcatg      4260
     cctggaaagc tggcggatgg tgggatcctg cacgttgggc gtgctggggg tgcccctgga      4320
     tatcacccct gggaatgaga tgcaccattg ggccagcagc ctaaagctgt acaccaggct      4380
     tactagggac ctgccaggag gtgtaactga ctctgggttt atgtccttta tgagatcttt      4440
     ggtaccatac ataggagtca gtgctcatga aaaaatgata agaaacctgt ccctgaccat      4500
     ggcagatatt gcttcctcca ctgccactgc cttggcagcc cagcagacat ccctcaactc      4560
     ccttgggaag gttgttttag acaacagaat tgctctagac tttcttttag cccaactggg      4620
     aggagtgtat gcaattgcca acacctcctg ctgtacctgg ataaacacct caggtatcgt      4680
     agaaacacaa gtagaggaga tccggaagca ggttcactgg ctgcagacag tggggccacc      4740
     tgaaggatcc ttctttgacc tctttagcaa cttcttacct ggatcactgg gatcctgggc      4800
     taggtcactg ctccaggcag gcctgatcat cctgcttgtg gtagtagtcc tcctgggccc      4860
     agtgaaatgt attctggcta tggctcaatg atgttgcact gagattgtgt cagtcaaggt      4920
     gctacatcaa tctgacaaga caaacctctg cctccagatc cggggaggtc ggtgggcata      4980
     tgaaatggac tagctttgct aagggggata tctgggttgg ggg                        5023
//
ID   MER60       repbase; DNA   ; ROD   ; 837 BP.
XX
AC   .
XX
DT   14-MAR-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   5' part of L1M subfamily.
XX
KW   Repetitive sequence; LINE; L1M subfamily; MER60.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-837
RA   Kapitonov V.V., Jurka J.;
RT   "MER60.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   MER60 is the 5' part of one of the L1M subfamily.
XX
SQ   Sequence 837 BP; 294 A; 153 C; 177 G; 188 T; 25 other;
     tgcagrttgc tagtgccaga gggagcaaag aattgtgatt gtggatttta attgctggca        60
     gctccctgaa ggactcacaa gtcttttttt ctcggctgaa gtggttcaaa aacatttaaa       120
     ggcacatttg ctggagcaag ggacaacatg rgrcaagcaa yagatagacc aaaaagccta       180
     agaaggaaga gmtgagaaat aagatgcttg gggaaawaag ggctttgaaa agtccacata       240
     ttcctgggaa tctagaaggc catgcacatg tccagggctg gacacatgct cagaaaagac       300
     ctaagaaggc cctaagcttt cacctctggc tgaccttnag actctgtaca agcaggaagt       360
     gaaggctaag gcagagttgt aaactgcctt ggctgagtgt tgaaggaatg ccycaacaca       420
     cagmcaatct gcaaagacta ggagactttt tttttgtgtt tggtddtktt gttgttrttc       480
     caggtattta aggaaayctc tgtcaawyac tagctgacca ctaagctaay cgarcagaga       540
     cttcagtggc cacacatgac aaagaataca gactttacaa aattagttta gaaaagtcac       600
     taaacaaaca ayacaacagc amayaayaag caacaacaac aaaccctgga aaggggagag       660
     aatctgattt ccagagttgc cacattataw tatttaaaat gtccagtttt ttttttcaac       720
     arcaacaaaa attatgaggc atacaaagaa acaaagaaaa gtatggccca tacacaggaa       780
     aaagaaatta atagaaacta tccctgagga agcccagaca ttgracttac tagacaa          837
//
ID   RMER3       repbase; DNA   ; ROD   ; 574 BP.
XX
AC   .
XX
DT   27-JAN-1997 (Rel. 3, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER3; putative LTR of retrovirus.
XX
OS   Rattus norvegicus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Rattus.
XX
RN   [1]
RP   1-574
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit F.A.;
RT   "Identification of new medium reiteration frequency repeats in
RT   the genomes of primates, rodentia and lagomorpha.";
RL   Genetica 98, 235-247 (1996).
XX
CC   [1] (Consensus)
XX
CC   7 bp terminal inverted repeats.
XX
SQ   Sequence 574 BP; 159 A; 176 C; 87 G; 152 T; 0 other;
     tgttgttgta aaaatataaa aataaagagt acagttgtct tttaccccgc taggtccgca        60
     ccacggtgcc caagatatct gctagatatc ttggcggaaa cacatcccag ccgcacactt       120
     ttttacactc aaaccctcac ataaaagaac acacaacaca ataatcttag acccaattgg       180
     taagatataa ttgcccacct aaacatacaa agcccggtac catccatccc ttaagaacat       240
     taataacaac ctgtaaatac acagagcgga atcttaacgt cacctgccat attgtcctgc       300
     catggcttct ccgcctctct ctccctcctg tctcttcctc tctcccttcc agtctcctcc       360
     tcttccttca aacttctctc ccgcccatcc ttccttctcc tccaatgaca ggcctccttc       420
     tatcctgtac ctgcccctca cctgtatttt acaaattcaa tggggagaag gttctggtga       480
     agtcacctga gtcctgagta cgtgactagg cagctgtcct tggggcagtg gaattagcat       540
     caaaatacag ataacttcag ggcaaaccac aaca                                   574
//
ID   CHARLIE1    repbase; DNA   ; ROD   ; 2739 BP.
XX
AC   .
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Autonomous DNA transposon.
XX
KW   DNA transposon fossil; MER1_type (hAT) family; Charlie1; MER64.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-177
RA   Smit F.A.;
RT   "CHARLIE1.";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [2]
RP   1-2739
RA   Smit F.A.;
RT   "CHARLIE1.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [2] (Consensus)
XX
CC   An apparently full-length member of the the hobo/Activator/Tam
CC   group of DNA transposons. The coding region from bp 636-2504
CC   encodes
CC   a transposase related to those of the other members of the
CC   family.
CC   15-16 bp terminal inverted repeats. 8 bp target site
CC   duplications.
CC   Individual copies on average 20.5% diverged from consensus.
XX
SQ   Sequence 2739 BP; 895 A; 475 C; 495 G; 861 T; 13 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactct       120
     cattctctca cgagtgtaca gtggagtttt ccagaggcta catgacgtgt gatgacatca       180
     tcgctctgat ggctaatgga atgtgtgctt gtgtattctt gtgttttcta aaatttttaa       240
     ggtagtaggt ttagggtata aatatgtagg ttttcagaga ttaactcagt ttsttcttag       300
     cacttctacc gtgctcttac tagctatctt cagttatacc tgctataatc tttgtaacct       360
     cattatcgtc caataaatca ttattttraa atcctaaagt tttcctcgwg cctatgtgaa       420
     aacacaagaa gcaagtacta cttgtaaaac ttgcttgcaa taacattttg aaaatttccc       480
     aaatgtttaa attttatcga caacatatag aatttaatat tttattctaa aataaaaatt       540
     tatttataaw gtttttccta tatttaaggg tggattgttg gcttaaaaaa gggagattag       600
     aagactcgct ttctcaaccc acagctgcam catctatgtc taaagatgct gaaatggaca       660
     taccagcaag ttctctgatt cctcatggaa rggaggaatc tactccaaag aaactgggcg       720
     aaactgtaaa taaaaaacaa aaatatgata aaagctatct tctcagcttt atagatgtta       780
     ataatttacc ttattgtgtc ttatgcaaca gaacattttc gaatagtatt atggtgccag       840
     ttaagttgcg gcatcatttt gagaccaatc attcagagtt taaagaaaaa ggaattaaat       900
     attttaaacg tagatgtgat gagctcttta aaagccaaaa attgtttgtt gcagcttttc       960
     aaactagaaa tgaaaaagcc actgaagcat cttacaggat aagttgccay attgcattgg      1020
     ctggagaagc mcacacaata actgagagac taataaagcc tcgaacagtt gacattgctg      1080
     aatgcctgct ggatgaaaag tcagtaaaag aaatcatagc actgccactt tccaatgata      1140
     cgataactcg tcaaattaaa gatttagctg caaacatgaa gaccgagtta atatntcatc      1200
     tgcagaattg tacttttgcc ttacaaatgg acgaatctac agatgtkgct agacttgctg      1260
     tgttgcttgc gttcgtctgg tatcagcacc aactgatcat cgaagaactt cttttatgtg      1320
     aattcttggc aacaaacaca agtggtgatg aaatattcaa agtgttgaat gacttttttg      1380
     aatctcatga tttatcctgg aacaactgtg ttgacatttg cactgatggt gcaaaagcaa      1440
     tggtgggtaa aactgctggc gccttagcac gaatcaaggc agtggcacca aactgtacta      1500
     gtagtcattg tattcttcac cgccacgcac tcgcagtwaa aaaaatgcca gtttcactta      1560
     agaatgtcct tgatgaagca gtaaaaatta ttaattttat taaatctcaa cccttgagta      1620
     cacgtctttt taatattctg tgtgacaaaa tgggaagtac gcataaagca cttctgctgc      1680
     ataccgaagt acgatggttg tctcgaggaa aagcacttgt gcgattgttt gagttgcgag      1740
     ctgaactagc tgcttttttc atggaacacc atttttactt gaaagaacga ctgacagaca      1800
     aactatggtt attcagactt gggtatttgg cagacatttt ctcgaaaatg aacgaagtga      1860
     gcctgtcact tcaaggaaaa caactgacag tatttgttgc caatgataaa attcgagctt      1920
     tcaagcgaaa attagaattt tggaaaactt gtatccgcca ccgtgagctt gacagcttcc      1980
     caatacttaa agacttttct gatgagatcg gtggtgatat taacgaatgt gattttttga      2040
     tattgtataa tgaaatgtgt caacatttgg aagatctgca taactcagtg aaccaatatt      2100
     ttccaaatga ccaatgcatg atgttacaaa atcatgcatg ggtaaaagat ccattcaaag      2160
     tgcaagatag accaatggat tttaatgtaa cagagtatga aaagttcatt gatatggttt      2220
     cagattccac attgcaacta acctttaaga aactaccact tgtcgagttt tggtgtagta      2280
     tcaaagaaga atatccacaa ttatctgaaa aggctattaa aatactcctc ccttttccaa      2340
     ctacatatct gtgtgaggcc agattttctt catatacttc aaccaaaaca acatatcgca      2400
     acagattgaa tgcagaagca gatatgagaa tccagctgtc ttctattaag ccagacatta      2460
     aagagatttg caaaaatgta aaacaatgcc actcttctca ctaaattttt ttgttttgga      2520
     aaatatagtt atttttcata aaaatgttat ttatgttaac atgtaatggg tttattattt      2580
     twaaatgaat waataaatat tttaaaaatt tctcagtttt aatttctaat acggtaaata      2640
     tcgatagata taacccacat aaacaaaagc tctttggggt cctcaataat ttttaagagt      2700
     ataaaggggt cctgagacca aaaagtttga gaaccgctg                             2739
//
ID   MER102      repbase; DNA   ; ROD   ; 332 BP.
XX
AC   .
XX
DT   30-JUL-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Interspersed repeat MER102 - a consensus.
XX
KW   Interspersed repeat; MER102.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-332
RA   Jurka J., Naik A., Kapitonov V.V.;
RT   "MER102.";
RL   Direct Submission to Repbase Update (JUL-1998).
XX
CC   [1] (Consensus)
XX
CC   Over 3000 copies in the genome. Present in Sus scrofa.
CC   The extreme 3' end similar to MER58 - probably insignificant.
CC   Potential transposable element - not confirmed.
XX
SQ   Sequence 332 BP; 94 A; 65 C; 85 G; 86 T; 2 other;
     gggttgcaaa ctcaaatgcc tacaggggcc aggcaggtaa cataaatgag tgaagtgggc        60
     caggtgggga ctgtggcaaa ctggagagca catgccctgt ctaaaggggg cagcagctgc       120
     tactcagctc cagccaattg ttgccatgtg ggaatgtagg cccagtgttg ccagatcttc       180
     tgatttttca agagaagcca gaaatctaga tttttatgtg aaatctcctg atttttaaat       240
     gttggcaact aatttaaaat ttttawaaaa cactgtgtag gccaaacaaa acatatctgt       300
     gggccagatt tagcccatrg gctgccagtt tg                                     332
//
ID   L1ME5       repbase; DNA   ; ROD   ; 507 BP.
XX
AC   .
XX
DT   28-MAR-2000 (Rel. 7.1, Created)
DT   28-MAR-2000 (Rel. 7.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1ME5) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1ME4; L1ME5 subfamily;
KW   L1ME5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-507
RA   Jurka J.;
RT   "L1ME5.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [1] (Consensus)
XX
CC   An ancient L1 subfamily, 69% similar to L1ME4.
XX
SQ   Sequence 507 BP; 242 A; 24 C; 39 G; 196 T; 6 other;
     ctaaggaaag aattaaaaaa agtacaaaaa tatatattca agaattttca tttcaatatt        60
     ggntttaaaa caataaaata tttggaaaca atctaaatgt ctaataatgg gagaataaat       120
     aaattatagt atatctataa aataaaatat tatatagcta ttaaaawtat atttttaaaa       180
     aatatttaat gatataaaaa aatntttata atataatatt aaataaaaaa aataaattat       240
     aaaattatat atataatata attttatatn ttaaatatat aatatatata taaatatata       300
     tatatatata tnaaataaaa aaaaaagact gaaaggaaat atacaccaaa atgttaacag       360
     tggttatctc tgggtggtgg gattataggt gatttttatt tttttttttt tttttatatt       420
     ttctgtattt tctaaatttt ttntaaattt tctacaataa atatgtatta cttttataat       480
     cagaaaaaaa ataaaaataa taaaaat                                           507
//
ID   L1MA9       repbase; DNA   ; ROD   ; 1053 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MA9) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; MER32; L1MA9 subfamily;
KW   L1MA9.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1053
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-1053
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [2] (Consensus)
XX
CC   Contains identical ORF2 region consensus (subfam L1M2) as L1MA5.
CC   ORF2 ends at bp 684; average divergence of copies from consensus:
CC   16%
CC   Replaces MER32 (Acc. No. J02963).
XX
SQ   Sequence 1053 BP; 418 A; 151 C; 193 G; 260 T; 31 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     atctcactta tatgtggaat ctaaaaaagt caaaytcata gaaacagaga gtagaatggt       720
     ggttaccagg ggctggggra kgggggaaat gggaagatgt tggtcaaagg gtacaaagtt       780
     kcagttatgt argatgaata agttctrgag ayctaatgta cagcatggtg actatagtta       840
     ataatactgt attgtatact tgaaatttgc taagagagta gatyttaagt gttctcacca       900
     canacaaatg gtaactatgt gaggtgatgg atatgttaat tagcttgayt gtggtaatca       960
     tttcacaatg tatacatata tcaaaacatc acgttgtaca ccttaaatat atacaatttt      1020
     tatttgtcaa ttatacctca ataaagctgr aaa                                   1053
//
ID   TIGGER5B    repbase; DNA   ; ROD   ; 446 BP.
XX
AC   .
XX
DT   28-JUN-2000 (Rel. 7.2, Created)
DT   28-JUN-2000 (Rel. 7.2, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   Repetitive sequence; TIR; Non-autonomous DNA transposon; MER47;
KW   TC1/mariner superfamily; TIGGER3; MER47B; TIGGER5B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-446
RA   Smit F.A.;
RT   "TIGGER5B.";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [2]
RP   1-446
RA   Smit F.A.;
RT   "TIGGER5B.";
RL   Update (2000).
XX
CC   [2] (Consensus)
XX
CC   A different internaldeletion product of TIGGER5 (see there)
CC   Consensus inverted from [1] to agree with TIGGER5 coding region.
XX
SQ   Sequence 446 BP; 134 A; 100 C; 86 G; 116 T; 10 other;
     cagatgctcc tcgacttacg atggggttac atcccgataa acccatcgta agttgaaaat        60
     attgtaagtc gaaaatgcat ttaatacacc taacctaccg aacatcatag cttagcctag       120
     cctaccttaa acatgctcag aacacttaca ttagcctaca gttgggcaaa atcatctaac       180
     acaaagccta ttttataata aagtgttgaa tatctcatgt aatttactga ayayartaca       240
     ctgtagarta yyggttgttt accctcgtga tcgcgcggct gactgggarc tgcggytcac       300
     tgycgctgcc cagcatcgcg acagagtatt gtaccgcata tcgcyagcct gggaaaagat       360
     cagaaattcg aagtacggtt tctactgaat gcgtatcgct ttcgcaccat cgtaaagttg       420
     aaaaatcgta agttgggaac catctg                                            446
//
ID   MER74A      repbase; DNA   ; ROD   ; 558 BP.
XX
AC   .
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   MER74 repetitive element - a consensus.
XX
KW   Long terminal repeat; MER74A.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-558
RA   A A.F., S B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   Putative retroposon LTR; 5 bp target site duplication.
CC   Orientation unclear. Average divergence from consensus 20.5%.
XX
SQ   Sequence 558 BP; 122 A; 191 C; 103 G; 141 T; 1 other;
     tgtattaacc atgtttttta ttttctgtat tcttgatgct ttgacatctg gggccttgct        60
     gaccctggag ggactgcccc tcccagggct agccaattcc tagagatagc aaacgactcg       120
     cctgggagcg cgcctttcat atgcaaacca accaatccag agcccacacc cccaaccacc       180
     tcctttatcg ggctctcaca ctctgggcca ctatccccct gccctaatca ccccagggcc       240
     aggtaccaga caactaggga cagcccctat accccagagc ccgctgaaat tattcaaact       300
     agccaatcct aagcctgctt accctgcctt gcccattcct tcccatggaa accacaataa       360
     aggctcttgc ccacgttttc ccgtcgctcc ctctgcctcc tgaccgaccc tggtgcttcc       420
     ccgtgtggcc ccccgtggcg tggcgtgccc ccttctcttg ggawctgtga gtaacaaact       480
     atcttttcaa tggcagtcgt ctcctgatct gttggcctta ccatacctga ataataataa       540
     aacctacatt ttaaaaca                                                     558
//
ID   MER21B      repbase; DNA   ; ROD   ; 795 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 5, Created)
DT   19-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   Human medium reiteration frequency MER21B repetitive sequence - a
DE   consensus.
XX
KW   Repetitive sequence; MER21B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-795
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-795
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. thesis (USC 1995).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 795 BP; 188 A; 210 C; 159 G; 191 T; 47 other;
     tcaacacaca acacttctgt caccaaacgt gtggrrrttt ttccccacac acaaacaakt        60
     cttcagttct gcggcggaca ccarctgggt gtcctccaat tcarttcagt tctgacacta       120
     wctacctrga gatagcgtca gatcccacag gtttaagggc tcagtcccac aagactgccc       180
     ccacttcaga trccagtcgc aagtctrggt tktcacccgt acttctgacc aactggctat       240
     aaattgttcc cacgacccct ctttaggttc gattaatttg ctagaatrgc tcacaraact       300
     cagggaaaca cttatattta ycggtttatt ataaaggata ttacaaagga tacagatgaa       360
     caaccagatg aagagatrca tagggcgagg tmtgggagag tccngggnnc aggagcttcc       420
     gtgccctctc tggstnnrcc accttccwgg cacctccacg tgttcaccaa cccggaagct       480
     ctccgaaccc tgtccttttg ggtttttatg gaggcttcat tacgtaggca tgaytgatta       540
     catcantggc cattgattat caactcaacc tycagcycct ctccyctccc cagaggttgg       600
     agggtggggc tgaaagttcc aaccytctaa tctgccttgg tctttctrgc gaccagcycc       660
     catccwgrag cntnctaggg gctgcccrcc akgagtcgmc tcattagmac aaaagrncrt       720
     ynctattacc caggarattc caagggtttt aggagytctg tgtcaggaac cggggtcaaa       780
     gaccaaatat tagat                                                        795
//
ID   LINE2B      repbase; DNA   ; ROD   ; 419 BP.
XX
AC   .
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   3'-end of L2 repeat (subfamily b) - a consensus.
XX
KW   Repetitive sequence; L2 (LINE) family; LINE2B subfamily; LINE2B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-419
RA   Smit F.A.;
RT   "LINE2B.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Average divergence from consensus 30%.
XX
SQ   Sequence 419 BP; 61 A; 154 C; 88 G; 107 T; 9 other;
     tcccccttgc tcactctgct ccagccacac tggcctcctt gctgttcctc aaacacgcca        60
     ggctctttcc cgcctctggg cctttgcaca tgctgttcyc tctgcctgga acgcccttcc       120
     ccwctccttc ancctggcca actcctactc gtccttcagg kctcagctca ratgtcacct       180
     cctccaggaa gccttccctg acttcccagg ccgagttagg tgccctcctc tgggcccccc       240
     cggtcctacc ctgccactct gggttatmat tgtctgtkng cangtctgtc tcccccactg       300
     gactgtgagc tccgcgaggg cagggactgt gtctgtcttg ttcaccactg tatccccagc       360
     gcctagcaca gtgcctggca catagcaggc gctcagtaaa tgtttgttga atgaatgaa        419
//
ID   L1MB7       repbase; DNA   ; ROD   ; 920 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 5, Created)
DT   20-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MB7) - a consensus sequence.
XX
KW   Repetitive sequence; L1 (LINE) family; MER12; L1MB7 subfamily;
KW   L1MB7.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-920
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
CC   ORF2 ends at bp 675.
XX
SQ   Sequence 920 BP; 363 A; 134 C; 167 G; 219 T; 37 other;
     yttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga yttgaataga tatttctcca aagaagatat ayaaatggcc       120
     aataagcaca tgaaaagatr ctcaacatca ttagtcatca gggaaatgca aatyaaaacc       180
     acaatgagat aycacttcac acccaytaga atggctaaaa ttaaaaagac agrmaatamc       240
     aartgttggy raggatgtrg agaaaytgga achctcatac aytgctggtg ggaatgtaaa       300
     atggtacarc yactttggaa aacagtttgg cagttcctca aaaagttaam aatagagtta       360
     ccatatgacc cagcaattyc actcctaggt atwtacccaa gagaaatgaa aacatayrtc       420
     cayacaaaaa cttgtacaca aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aatratwgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagcmat aaaaaggaat gaagtamtga tmyatgcaac aacatggatg       600
     aaccttgaaa acattatgct aagtgaaaga agccarrcac aaaagrccac atattgtatg       660
     attccattta tatgaaatgt ccagaatagg caaatccata gagacagaaa gtagattagt       720
     ggttgccagg ggctgggggr aaggggaaat ggggagtgac tgctaatggg tacggggttt       780
     ctttttgggg tgatgaaaat gttctaaaat tagatagtgg tgatggttgc acaactytgt       840
     gaatatacta aaaaccactg aattgtacac tttaaaaggg tgaattttat ggtatgtgaa       900
     ttatatctca ataaarctat                                                   920
//
ID   L1M6_5      repbase; DNA   ; ROD   ; 2113 BP.
XX
AC   .
XX
DT   30-APR-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Subfamily of LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1M6_5; L1 subfamily.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2113
RA   V V., Jurka J.;
RT   "L1M6_5.";
RL   Direct Submission to Repbase Update (APR-1998).
XX
CC   [1] (Consensus)
XX
CC   5' end of L1, probably of the L1MA9 subfamilies.
CC   Multiple ~30 bp tandem duplications in promoter region.
XX
SQ   Sequence 2113 BP; 522 A; 791 C; 500 G; 279 T; 21 other;
     gacatcagca agatggcgga ataggacttt ccagcgctcg tcctcacaga aacatcaatt        60
     tgaacaacta tccacgcacg aaaatacctt cacaagagct aaggaaacca ggtgagagat       120
     tacagyacct gggtgtagca cagaaataag aaaagacgca ttgaagaggg taggaaggac       180
     agttttacat tacccgcgtc acccctcccc caancccagg cagcacagca tggagagaga       240
     taccctctgc ttgggggaag gagagggaag tgagcacagg actttgcctt ggaccccaaa       300
     cactaggccc gccccagtaa aacccagtac taggcaggcc cccatagccc cagactccag       360
     gccagtacct acggactgag ccgyaccaga tcccacagcc caggctccag gcctgcctgg       420
     tggactcagt ctccaggcct gccccagcac caggccaacc ccagtgcccc aggctccaga       480
     ccggccccag caccaggcca gccccagtag ccccaggctc caggctgscc ccagcaccag       540
     gctggccccc atagccccag gcttcaggcc caccccagca ccaggctggc ccctrcagcc       600
     ctagtcatca ggccagcacc tatagaccca gcctccaggc tggcccctgt agacacaggc       660
     tccaggccta cccagcrcca ggccagcccc tgtagcccca ggctccaggc ccaccccagg       720
     ytccagacca gcccagagcc aggtyggccc acatagcccc aggcttcagg cctgccccag       780
     yaccaggtca gcacccctgg cctcagacct tagccaggta ccaggctggc acctgtagac       840
     acaggctcca ggcctgccca gtaccaggcc agtccctgtg gccccaccct ccagggcyag       900
     cccctgtggc cccatgctcc agcagaccca gggttcaggc ctgtcccagt agaccccagc       960
     actaggctag tccccataga cccaggctcc aggactgtcc ctgtgtaccc aggtcccagg      1020
     gcagccccta tggccccagg acccaggcca gccctcagag acctagcctc taggccagcc      1080
     ctgcagaccc agcctccagg ctggcaccca yagacccaag ctccaggcca tcccccaggt      1140
     tccaggccag cctcagtagc tccaggcacc aggctagcac ccacagaccc aggctccaga      1200
     ctagccccac gctaccccag caccaggcca gccccaggct ccaggctggt ccctgtggcc      1260
     caggctccag tggacccagg gtccaggcct gctccagcag acccagggtc caggcccacc      1320
     ccagtagacc ctggttccag gctagccccc atggactcag gctccaggac cacccctgca      1380
     gacccaggct ccaggccagc cccyatggac caggatccar ggcccatytc cccagttgca      1440
     ggctccaggc ctgccccagt gccaggccag cccccatgga ctcaggctcc aggcccatcc      1500
     cagtggaccc aggctccagg cccatcccag yaccaggcca gcccctgyag actcaggctc      1560
     aaggcccacc ccagcaccag gtcagcccct gtggacccag gcttcaggcc agcccctata      1620
     gacacaggct ccaggccyac cctcatggac ccaggctcca ggcccayccc cacagaccca      1680
     atcaacaggt ccacccagtg gatccaggct ccaggcycaa ccctgtggac ccaggcacca      1740
     ggcctgccac ctgctgaccc aggcaccagg ccagcctgcc taaggactcc agcagcaagc      1800
     ctgcctatag accataccag atggcctgcc cagaatctct ggatgactgg tgaagggctt      1860
     tcccagacaa agccagtctg caaagactgg aataagtccc tacttcttca aatgtgcaga      1920
     caccaatgca aggcccaaga atcawgaaca atcagggaaa catgacacca ccaaaggaac      1980
     aaaataaatt tccagtaact gaccctaaag aaatggagat ctatgaactg cctgacaaag      2040
     aattcaaaat aattgtttta aggaagctca gtgaactwca agaaaacaca gatagacaat      2100
     taaatgaaat cag                                                         2113
//
ID   L32         repbase; DNA   ; ROD   ; 408 BP.
XX
AC   K02061;
XX
DT   29-MAY-1998 (Rel. 3.1, Created)
DT   29-MAY-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Mouse ribosomal protein pseudogene rpL32-4A coding for L32.
XX
KW   Pseudogene; ribosomal protein; L32.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-408
RA   Dudov P.K., Perry P.R.;
RT   "The gene family encoding the mouse ribosomal protein L32
RT   contains a uniquely expressed intron-containing gene and an
RT   unmutated processed gene.";
RL   Cell 37, 457-468 (1984).
XX
DR   GenBank; K02061; Positions     113     520.
XX
SQ   Sequence 408 BP; 128 A; 103 C; 107 G; 70 T; 0 other;
     atggctgccc tccggcctct ggtgaagccc aagatcgtca aaaagaggac caagaagttc        60
     atcaggcacc agtcagaccg atatgtgaaa attaagcgaa actggcggaa acccagaggc       120
     attgacaaca gggtgcggag aaggttcaag ggccagatcc tgatgcccaa catcggttat       180
     gggagcaaca agaaaaccaa gcacatgctg cccagcggct tccgcaagtt cctggtccac       240
     aatgtcaagg agctggaggt gctgctgatg tgcaacaaat cttactgtgc tgagattgct       300
     cacaatgtgt cctctaagaa ccgaaaagcc attgtagaaa gagcagcaca gctggccatc       360
     agagtcacca atcccaacgc caggctacgc agcgaagaaa atgaatag                    408
//
ID   LPKR_RN     repbase; DNA   ; ROD   ; 316 BP.
XX
AC   X05684;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3, Last updated, Version 3)
XX
DE   Repetitive segment of L-type pyruvate kinase.
XX
KW   Repetitive sequence; pyruvate kinase; RNLPKG; LPKR_RN.
XX
OS   Rattus norvegicus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Rattus.
XX
RN   [1]
RP   1-316
RA   Milner J.R., Bloom E.F., Lai C., Lerner A.R., Sutcliffe G.J.;
RT   "Brain-specific genes have identifier sequences in their
RT   introns.";
RL   Proc. Natl. Acad. Sci. USA 81, 713-717 (1984).
XX
RN   [2]
RP   1-316
RA   Cognet M., Lone C.Y., Vaulont S., Kahn A., Marie J.;
RT   "Structure of the rat L-type pyruvate kinase gene.";
RL   J. Mol. Biol 196(1), 11-25 (1987).
XX
DR   GenBank; X05684; Positions    4072    4387.
XX
SQ   Sequence 316 BP; 68 A; 56 C; 79 G; 113 T; 0 other;
     gggggtgggt ttgtttttgt ttttgttttt gtttttttga gatcgggtct ttttatgttg        60
     tagctctgac tgatggatag gcaggtctca aatttagaaa tctccctacc tttgcctcct       120
     gagagttgga ctgggaccac cttgctccac atgaggctgg gtttttgaga cagggtctca       180
     ggtagccttg gatatttcta gcttatttca tagaccctat tatatcgtct tagcctggtg       240
     aaagcatagg tatgtgatac cacacccaac ttaacaaatg cttgttgagt acctggaaaa       300
     caaggtttgg aattgg                                                       316
//
ID   MLT1F1      repbase; DNA   ; ROD   ; 561 BP.
XX
AC   .
XX
DT   17-FEB-1999 (Rel. 6.8, Created)
DT   17-FEB-1999 (Rel. 6.8, Last updated, Version 1)
XX
DE   MALR long terminal repeat; MLT1F1 subfamily: a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MLT1f subfamily; MLT1F1.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-561
RA   Jurka J.;
RT   "MLT1F1.";
RL   Direct Submission to Repbase Update (FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   The primary difference from MLT1F is in the 5'-region.
XX
SQ   Sequence 561 BP; 146 A; 146 C; 124 G; 141 T; 4 other;
     tgtccacaaa ttctttgata ctcctcttaa gaggtggagt ctaattcccc tccccttgaa        60
     tntgggctgg acttagtgac ttgcttctaa ccaatagaat atggcagaag tgatggtatg       120
     tgacttctaa ggctaggtca taaaaggcat tgywgtagct tcctncttgc tctctctctc       180
     tctctctctt ggatcactca ctctggggga agccagctgc catgtcatga ggacactcaa       240
     gcagccctgt ggagaggccc atgtggcaag gaactgaggc ctcctgccaa cagccagcaa       300
     ggaactgagg cctcctgcca acagccatgt gagtgagcca tcttggaagc agatcctcca       360
     gccccagtca agccttcaga tgactgcagc cccagctaac atcttgactg caacctcatg       420
     agagaccctg agccagaacc acccagctaa gctgctccta aattcctgac ccacagaaac       480
     tgtgagagat aataaatgtt tgttgtttta agccactaag ttttggggta atttgttatg       540
     cagcaataga taactaatac a                                                 561
//
ID   MER77       repbase; DNA   ; ROD   ; 650 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 4)
XX
DE   MER77 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER77.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-650
RA   Smit F.A.;
RT   "MER77.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   Related to MER68 and MER21.
XX
SQ   Sequence 650 BP; 164 A; 161 C; 156 G; 137 T; 32 other;
     actacggggg gaggtgtcaa attcaaaggt ctccaagacm accctcctgt ttartgattc        60
     gctagaagga ctcacagaac tcagaaaagc cgttatactc acagttacgg tttattacag       120
     tgaaaggata cagattaaag tcagcaaagg graaaggcac ataggncagn gtccaagaga       180
     rmcaggcacg rgcttccagt tgtcctctcc cggcggagtc gtrcgggcag cgcttaattc       240
     tcccagcaac grtgtgtgac agcacgcatg aagtattgcc aaccagggaa gctcacccga       300
     gccttggtgt ccagagtttt trttgggggt cggtnanata ggcatggntg accccgcagc       360
     atggctgacc ttggtcttct caggcttgag ccncccaagc atggctgacc tnagttactc       420
     agtctycagc ccctccagar gtcarryacc gtgtagccta aggcccccac cataaatcac       480
     attgttagca trractgtcc ggtatggccc aaggccytcg cagataaaca aagayactyt       540
     tatcaggcag gacattccaa gggcttagag gttatctccc arrgcctgag gataamcgag       600
     ggccaganct ttctttgggc aaggttaatc ctttactgya yaagaccaca                  650
//
ID   HAL1        repbase; DNA   ; ROD   ; 2463 BP.
XX
AC   .
XX
DT   31-MAR-1998 (Rel. 6.4, Created)
DT   09-JUN-1999 (Rel. 7, Last updated, Version 3)
XX
DE   HAL1 repetitive element - a consensus sequence.
XX
KW   HAL1; LINE1-like element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   737-2463
RA   Smit F.A.;
RT   "HAL1.";
RL   Direct Submission to Repbase Update (MAR-1998).
XX
RN   [2]
RP   1-736
RA   Jurka J.;
RT   "HAL1.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
CC   HAL1 resembles Half An Line1 element, as it encoded a protein
CC   closely
CC   related to the ORF1 of LINE1 product (the LINE1 mRNA binding
CC   protein
CC   p40), but has no similarity to ORF2. Sequence 892 to 1576 is 68%
CC   similar
CC   to the ORF1 region of the old LINE1 subfamily L1ME. Sequence 1703
CC   to
CC   1835 is 76% similar to part of the coding region in the 8A-2B and
CC   8A-2V
CC   mRNAs (GenBank entries MM8A2BGEN and MM8A2VGEN). Average
CC   divergence of
CC   copies from the consensus is 28%. The 5' end of HAL1 is probably
CC   incomplete.
XX
SQ   Sequence 2463 BP; 960 A; 430 C; 535 G; 501 T; 37 other;
     aagatggcag attgaacata tacatttatt tttctccctc ccaaaacccc actaaaatga        60
     caataaagga attttttaaa agacataaac ccacaaggac aaagagaaca ggagaggaga       120
     caatagcaac aaaattttgg aagctggaaa gcagatggat aagtggtaac tgacttagca       180
     gacctgagaa agctgaatcc taagccagca gtggggaaag ccaagaagca acccaattta       240
     caccgccaga atcctcccca aaaggctcag gaattggtgg caccaggtac ctctggaagt       300
     gggggtgaag gtgaggctaa aaacagggag gattgattga aagtctgttt aagaagcagt       360
     tagatcccca gattccctcc cccactctat ngcagccaga taactgatcc tcctccaccc       420
     tagcagaaga ctggaggttt attctctgga gaggataaaa caaaggggtc tctggactgg       480
     ggaacaccag gcacagttga gggcagaggg gnactgtact gaaaacaggg gaattaagtg       540
     aaagtttaca tactgaatgt tgagactccc agccctcttc ccccattcag ctcccagaat       600
     gctggcagcc aggcctatac cctccagaca ggagattaga agagntcttc tctggagaat       660
     ctgaccagcc caagagaaaa gacttaaaaa tactgataat agaggttccc caaacaaaat       720
     agcccagcca gatcacccct atagtgaagc ccacmacctg gcaagcccca cccacgcact       780
     cagagcttcc aagtcgcttt ttagtstccc actcttaaat atgagcagac agccaaggat       840
     caccagacat ctgaggaaan cctctaatat ggcagacaga naaataaaaa cagagaaaaa       900
     cawwntntat ccatgaaaca agaayaggat gctataaaaa ggaacattca gagaacaaaa       960
     agaagctctt ggaaattaaa aacgtgagag cagaaattaa aatttcaata gaagggttgg      1020
     aagataaagt tgaggaaatc tcccagaaag tagaacaaac aaaggataaa gatacggaaa      1080
     ataggagaga aaagaattaa aaaaattgag gatcagtcca ggaggtccaa catccaacta      1140
     atagaagttc cagaaagaga gaacagagaa aaagatggaa gagaaattat caaagaaata      1200
     attcaagaaa atttcccaga actgaaggac atgaatttcc agattgaaag gncccaccga      1260
     gtgcttaccg caaaaatgaa ggaaaaaaat agacccacac caaggcacat cattgtgaaa      1320
     tttcagaaca ctgaganaaa aggaaaatcc caaaagcttc cagagagaaa aaaaggtcac      1380
     atacaaagga tnagaatcag aatggcatya gacttctcaa cagcaacact ggaagctaga      1440
     agacaatgga gcaatgcctt caaaattctg agggaaaatg atttycaacc tagaattcta      1500
     tacccagcca aactatcaat caagtgtgag ggtagaataa agacattttc agacatgcaa      1560
     gatctcaaaa aatttacctc ccatgcaccc tttctcagga agctactgga ggatgtgctc      1620
     caccaaaacg agggagtaaa ccaagaaaga ggaagacatg ggatccagga aacaggggat      1680
     ccaacacagg agagaggtaa agggaattcc caggatgatg gtgaagggaa attccaggat      1740
     gacagctgtg cagcaggcct agagagcaac cagtccagat tggagcagga agatggaagg      1800
     ctccaggagg aatgttctca agaaaataga anacaaatga aactgataga ttatctgatg      1860
     tgtttgaata tattgagagg ntatnattta gwcatgtgaa agtttggggg agaattgaat      1920
     tagtgatagg tacanagaaa actaagcaaa tgaaaaaaag caagacaatt attaactcca      1980
     gggaaaacaa aaagttgtac aagaaaggaa atgtaatcat agtacactac atggctcagc      2040
     tgtgaataac atatttacat agtcataata atgtaaacac traatactga tttaaccaaa      2100
     attatgatat aaactatatt gggaggataa gaaatggaaa gggtgtgcgt atkgtgtang      2160
     nggaatgara gaantaaatc ctcatcttcc atagtaggaa gtcartagat aatgtctaaa      2220
     actgaaaaat caagaaatag caatataagc atgttattta gaaatatgga ggtaaatatt      2280
     ccaaaagaat cagctaaaag agttgaaagt ggttgcctct ggggaaggag ctgnaggtgg      2340
     tgaagagngn agggacgggg aaytgctgtt ttttataagc cttttagtac tatttgacct      2400
     tttaaactat atacatrtat tactttaatt taaaaaanta anttataaaa aagnaaataa      2460
     gta                                                                    2463
//
ID   L1MC2       repbase; DNA   ; ROD   ; 1077 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MC2) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; MER16; L1MC2 subfamily;
KW   L1MC2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   869-1017
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-1077
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [3]
RP   1-1077
RA   Smit F.A.;
RT   "L1MC2.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [3] (Consensus)
XX
CC   Replaces MER16 (Acc. No. X59020)
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   18%.
XX
SQ   Sequence 1077 BP; 423 A; 176 C; 194 G; 268 T; 16 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tccaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catactctta       360
     ccatatgatc cagcaatcay actccttggt atttacccaa atgaattgaa aacttatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaagaaat gaactatcga gacatgaaaa gacatggagg       600
     aaccttaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtatg       660
     attccaacta tatgacattc tgaaaaaggn aaaactatgg agacaagtaa aaagatcagw       720
     gattnctaga gkgastrgga rrgggaggga agaataggtg gagcncaggg gatttttagg       780
     gcagcgaaac tattctgtat gatactataa tggtggatac atgacattat acatttgtca       840
     aaayccatag aactgtacaa yacaaagagt gaaccctaat gtaaactatg gactttagtt       900
     aataataatg tatcaatgtt ggttcatcaa ttgtaacaaa tgtaccacat taatgcaaga       960
     tgttaataat agggtaaact rttgtgtggg ggagggagta tatgggaact ctctgtactt      1020
     tctgctcaat ttttctgtaa acctaaaact gytctaaaaa ataaagtcta ttaataa         1077
//
ID   L1MC2       repbase; DNA   ; ROD   ; 1072 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 5, Created)
DT   20-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC2) - a consensus sequence.
XX
KW   Repetitive sequence; L1 (LINE) family; MER16; L1MC2 subfamily;
KW   L1MC2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1072
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-1072
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [2] (Consensus)
XX
CC   Replaces MER16 (Acc. No. X59020)
CC   Temporarily contains ORF2 region consensus of L1MB7 (subfam L1M4)
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   18%.
XX
SQ   Sequence 1072 BP; 427 A; 157 C; 184 G; 257 T; 47 other;
     yttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga yttgaataga tatttctcca aagaagatat ayaaatggcc       120
     aataagcaca tgaaaagatr ctcaacatca ttagtcatca gggaaatgca aatyaaaacc       180
     acaatgagat aycacttcac acccaytaga atggctaaaa ttaaaaagac agrmaatamc       240
     aartgttggy raggatgtrg agaaaytgga achctcatac aytgctggtg ggaatgtaaa       300
     atggtacarc yactttggaa aacagtttgg cagttcctca aaaagttaam aatagagtta       360
     ccatatgacc cagcaattyc actcctaggt atwtacccaa gagaaatgaa aacatayrtc       420
     cayacaaaaa cttgtacaca aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aatratwgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagcmat aaaaaggaat gaagtamtga tmyatgcaac aacatggatg       600
     aaccttgaaa acattatgct aagtgaaaga agccarrcac aaaagrccac atattgtatg       660
     attccaacta tatgacattc tgaaaaaggn aaaactatgg agacaagtaa aaagatcagw       720
     gattnctaga gkgastrgga rrgggaggga agaataggtg gagcncaggg gatttttagg       780
     gcagcgaaac tattctgtat gatactataa tggtggatac atgacattat acatttgtca       840
     aaayccatag aactgtacaa yacaaagagt gaaccctaat gtatggactt tagttaataa       900
     taatgtatca atgttggttc atcaattgta acaaatgtac cacattaatg caagatgtta       960
     ataatagggt aaactrttgt gtgggggagg gagtatatgg gaactctctg tactttctgc      1020
     tcaatttttc tgtaaaccta aaactgyttc aaaaaataaa gtctattaat aa              1072
//
ID   L1MA2       repbase; DNA   ; ROD   ; 1055 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MA2) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; MER14; L1MA2 subfamily;
KW   L1MA2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1055
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-1055
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 684; average divergence of copies from consensus:
CC   11%
CC   Replaces MER14 (Acc. No. X59018).
XX
SQ   Sequence 1055 BP; 423 A; 156 C; 192 G; 247 T; 37 other;
     ytaatatcca gaatmtataa ggaactcaaa caaatcaaca agaaaaaaac aaataatccm        60
     attaaaaart gggcaaaaga catgaayaga catttctcaa aagaagacat acaaatggcc       120
     aacargyata tgaaaaaatg ctcaacatca ctaatcatca gagaaatgca aatcaaaacy       180
     acaatgagat atcatctcac cccagttara atggctttta ttaaaaagac aaaaaataac       240
     aratgctggy gaggatgtgg agaaaaggga actcttayay actgttggtg ggaatgtaaa       300
     ttagtacarc caytatggaa aacagtttgg agrttyctca aaaaactaaa aatagarcta       360
     ccatatratc cagcaatccc actrctgggt atatayccaa aagaaaggaa atcagtatat       420
     yaaaragata cctgcactcc catgtttatt gcagcactat tcacaatagc haagatttgg       480
     aatcaaccta agtgtccatc aacrgatgaa tggataaaga aaatgtggta catatacaca       540
     atggagtact attcagccat aaaaaagaat garatcytgt catttgcagc aacatggatg       600
     gaactggagg tcattatgtt aagtgaaata agycargmac araaagacaa acaytgcatg       660
     ttctcactta tttgtgggat ctaaaaatca aaacaattga actcatggag atagagagta       720
     gaaggatggt taccagaggc tgggaagggt agtnggagga ttggggggng gkgrrgaggg       780
     atggttaatg ggtacaaaaa aatagttaga aagaatgaat aagacctagt atttgatagc       840
     acaacaaggt gactatagtc aataataatt taattgtaca ttttaaaata actaaaagag       900
     tataattgga ttgtttgtaa cacaaaggat aaatgcttga ggggatggat accccatttt       960
     ccatgatgtg attattacac attgcgtgcc tgtatcaaaa catctcatgt accccataaa      1020
     tatatacacc tactatgtac ccacaaaaat taaaa                                 1055
//
ID   MSTC        repbase; DNA   ; ROD   ; 405 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Transposon-like human element long terminal repeat (MSTc
DE   subfamily) - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MSTc subfamily; MSTC.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-405
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 405 BP; 102 A; 95 C; 88 G; 111 T; 9 other;
     tgctacggtt tgaatgtttg tcccctccaa aactcatgtt gaaacttaat ccccaatgtg        60
     gcagtattga gagrtggggc ctttragagg tgattgggtc atgagggctc tgccctcatg       120
     aatggattaa tggattaacg tattaatgga ttaattggtt atcacgggag tgggatcggt       180
     ggctctatca taaaarycat tttgnctctc gnrtgngccc cttcttgccc tttcacgcct       240
     tccgccatgt tatgacagag cacaaggccc tcaccagaaa ccagatgcag ccgccatgat       300
     cttggacttc ccagcctsca gaaccgtgag caaaataaac ctcttttctt tataaattac       360
     ccagtctatg gtattccgtt aaagcagcac gaacggacta agaca                       405
//
ID   RICKSHA     repbase; DNA   ; ROD   ; 2030 BP.
XX
AC   .
XX
DT   29-JUN-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   RICKSHA repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon fossil; composite mobile element;
KW   RICKSHA.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2030
RA   Kapitonov V.V., Jurka J.;
RT   "RICKSHA.";
RL   Direct Submission to Repbase Update (JUN-1998).
XX
CC   [1] (Consensus)
XX
CC   Putative non-autonomous DNA transposon fossil. Perfect 79 bp
CC   terminal
CC   inverted repeats.
CC   Target site is unclear. There is a tendency to have 8-10 flanking
CC   direct repeats. These repeats do not belong either to the target
CC   sequence or RICKSHA itself.
CC   Average identity of individual copies to the consensus sequence
CC   is 81%.
CC   RICKSHA is a composite element since it carries (positions
CC   184-904 of
CC   the RICKSHA consensus sequence) a 3'-portion of HERVL endogenous
CC   retrovirus including its LTR (MLT2B). RICKSHA has been mobile
CC   also before
CC   the retroviral insertion; we found several copies of RICKSHA
CC   without HERVL-related portion.
XX
SQ   Sequence 2030 BP; 577 A; 379 C; 414 G; 651 T; 9 other;
     gggtttggat cataatcccg aaagacacaa tcccaaacgc cataatcccg aatgttgaaa        60
     tcccgaaaga tcaaaatcct aaagtctaaa tccctaaagt ctaaaatccc taatgtctaa       120
     aatcccgaaa atcacaatca cgaaagatta aaatctcaaa tattgaaatc ctgaaagccg       180
     aattctgggg aagggattag tgcgttttcg gttgtacgca ggatagttgc atcatgttag       240
     ttgcatcatg ttaggtggca gaactattac cttgttattg tctttatttg gaaattaagt       300
     atggtttaag gagacacgta tgggtgccaa gttgacaagg agtggacttg tggacttaat       360
     tttaggtgtc aacttgactg gattaaggaa tacctagaaa cctggtaaag cattattttg       420
     ggtgtgtctg tgagggtgtt tccagaggag attagtgtgt gagtctgagc ggactaggcg       480
     gggaagatct gccctcaatg ttggcgagca ccatccaatc ggccgggggc ccggagagaa       540
     caaatacaga aggcgaactg gtctctctct gagagctggg acagattttt cttctgctgc       600
     cttggacatc agaactctgg gcttgctggc tttggactcc aggacttaca ccagtcctnn       660
     naaccgggtc ctgaggcttt cggacctcag actgagagtt acaccattgg cttccctggt       720
     tctgaggctt ttggacttgg actgagccat actgccggca tcccagggtc tccagcttgc       780
     agacggcctg tcgtgggact tctcagccac cataatcgcg ttagccaatt cttctaataa       840
     attccctctc atrtatatat atatcatatt ggttctgtct ctctggagaa ccctgattaa       900
     tacagatttg gtattgggga agccgaatat cattccttct tactgtattc cttacaacat       960
     aatagaagag atctgtgaaa ttgttccctc acaaaaaggc tgtgataaaa taagtggacg      1020
     aggctactca attgtgaaag ataaaattta aaagctaatt attattggtg ctgcaaaagc      1080
     agaaaatcac ttaattacaa tggccgagca ataaccagct tttaaatgga cagcatatac      1140
     ttacaaaatt tgtagaccac aaccactctg caaatacaca tgcagcaagt gtcttgaaga      1200
     tggcaamart gaaaattcag tttaaaaata cawsaattsc ctgccaaatt attcaatctg      1260
     tatgacttct acttctttac acaaaattta tgctatgtat ttcatcttcg catcatttcc      1320
     aatactggag gtataaattg tgtagagact tttagagagt tctaatttgt tttatgcatt      1380
     ttttgcaaat ttgactccac gaaagtgcat tatcacaatg ttgactttgt gtgtaagcat      1440
     tgtgcatgta tgtaaaaacg ttgaaacttc ctcaataaat gaagagatgt cctttttgta      1500
     catctgcatt tgtgaaagat aaaatttctc aagatcttgg ctctttgggc gactgcatat      1560
     gcggtggtga cccatcgcgg tttttgatcg atctcgtcaa aagacttagg ttgttcgtca      1620
     cggtatttca gatgaccgca gttataaagc tgggtgcaca caattaccaa ccatagtgat      1680
     atgcgtttat acatttccct ttttgaccta tttctttatg aatacggttc gtctgctcat      1740
     aactgttata cccgtgcgac tgtcattagt atacctgagt gtttatgctt gcaaaaatat      1800
     gtatgttatt attgcctatt ttattgtgta aagtggccta tgaagtgttc tgtcatgttt      1860
     ttatatgttt ctcaaataaa tcccctttta aaaatgtaaa taaattatct tttaaagaat      1920
     ttttaaattt tttttcagaa ttatattttc gggattttga tctttcggga tttcaacatt      1980
     cgggattatg gcgtttggga ttgtgtcttt cgggattatg atccaaaccc                 2030
//
ID   LINE2       repbase; DNA   ; ROD   ; 2750 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   MIR2/LINE2 repetitive element - a consensus.
XX
KW   LINE; L2 family; MIR2; MIR2/LINE2; LINE2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2750
RA   Degen J.S., Davie W.E.;
RT   "Nucleotide sequence of the gene for human prothrombin.";
RL   Biochemistry 26, 6165-6177 (1987).
XX
RN   [2]
RP   2601-2750
RA   Smit F.A., Riggs D.A.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation.";
RL   Nucl. Acids. Res 23, 98-102 (1995).
XX
RN   [3]
RP   1-2750
RA   Smit F.A.;
RT   "LINE2.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [3] (Consensus)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
CC   This sequence represents the 3' part of an ancient LINE-like
CC   element
CC   which was responsible for the amplification of the MIR elements.
XX
SQ   Sequence 2750 BP; 593 A; 941 C; 336 G; 815 T; 65 other;
     ctgtcattca ttaccgntcc ttgttgcagt catccatcga gcccggctcg gtcactccct        60
     ctcatttctc gaagaktttr tctcctagnt caactgtcac tctctcataa taatantcct       120
     gtcataattc ttggtgattt caatatccac atagacgatc catccaatac tctggcctct       180
     cagttccttg acctcctctc tcccgtggtc ttgttctcct ctacccactc tcagccactc       240
     actcccatgg tcatacccta gatcttgtca ttactaataa ctgcaactcc tccataatct       300
     caatttcaag catccyactc ttttaccacy acctcctatc tttctagctc actctctctg       360
     gtgccctaac tccaataaty ctttgacccc accgagacct mcaatccatt gatctcatat       420
     gcttttcact gtnccgtgtc ctcttccctc ctttcwttgc tcagattcca tggtcaatca       480
     ttataatcac tcccwtacan ataccctcaa ctcccttgcc cctytctcmc tttgtcttac       540
     ttrcttgnca aaaccacaac cctggttaaa tccaactntc cgactaattt rcgcctgcac       600
     ccgngcagct aaacatggct gragaaaaat acacaaccat gctgactggt ctcactttaa       660
     atttatgacc acgaacctca agtgrgccct taatgctgcc aggcaattnt actacatttc       720
     cctagtccat tcactctccc actctcctag atgactattt yatactttct tnyttctcaa       780
     acctccaaca yyyyytncca tctttactct cagctgatga ccttgcttcc tatttcactg       840
     agaaaataga agcaatcaga agagaatttc cacatgctcc caccaccaca tctacccacc       900
     tacctgcatc tgtacccata tactctgcct tccctcctgt taccgtggat gaactgtccg       960
     tgctcctatc taargccaac ccctccactt gtgcactaga tcccatcccc tcttgcctac      1020
     tcaaggacgt tgctccagca attctcccct ctctctcctg catcatcaat ttttccctct      1080
     ctactggatc attcccatca gcatataaac atgctgnnat ttctcccatc tttaaaaaac      1140
     aaaaattctc cctcgacccc acttccccct ccagctaccg ccctatttct ctgctcccct      1200
     ttacagcaaa acttctcaga agagttgtct atactcgttg tctccacttc ctcacctccc      1260
     gttctctctt aaacccactc caatcaggct ttcgtcccta ccactccact gaaactgctc      1320
     ttgtcaaggt caccaatgac ctccacgttg ccaaatccag tggtcagttc tcagtcttca      1380
     tcttacttga cctctcagca gcatttgaca cagttgatca ctccctcctt cttgaaacac      1440
     tttcttcact tggcttccag gacaccacac tctcttggtt ttcctcctac ctcactggcc      1500
     gttccttctc agtctccttt gctggytcct cctcatctcc ccgatctcta aatattggag      1560
     tgccccaggg ctcagtcctt ggacctcttc tcttctctat ctacactcac tccctgggtg      1620
     atctcatcca gtcycatggc tttaaatacc atctatacgc tgatgactcc caaatttata      1680
     tctccagccc agacctctcc cctgaaytcc agactcctat atccaactgc ctactcgaca      1740
     tttccatttg gatgtctaac agrcatctca aayttaacat gtccaaaact gaactcctga      1800
     ttttcccccc caaacctgct yctcccgcag tcttycccat ctcagttaat ggcaactcca      1860
     tccttccagt tgctcargcc aaaaaccttg gagtcatcct tgattcctct ctttctctca      1920
     caccccacat ccaatcyatc agcaaatcct gttggctcta ccttcaaaat atatccagaa      1980
     tccgaccact tctcaccatc tccactgcya ccaccctggt ccaagccacc atcatctctc      2040
     acctggacta ctgcaatagc ctcctaactg gtctccctgc tyccaccctt gcccccctnc      2100
     agtctgttct cagcacagca gccagaatga tccttttaaa atgtaaatca gatcatgtca      2160
     ctccyctgct caaaaccctt caatggcttc ccgtttcact cagagtaaaa kccaaagtcc      2220
     ttaccgtggc ctacaaggcc ctatatgatc tggcccccgc ytayctctct aacctcatct      2280
     tctaccactt tccccctcgc tcactctgct ccagccacac tggcctcctt gctgttcctc      2340
     gaacacgcca rgcwcgttcc tgcctcaggg cctttgcact tgctgttccc tctgcctgga      2400
     acgctcttcc cccagatatc cacgtggctc actccytcac ctcmttcagg tctctgctca      2460
     gatgtcacct yctcagagag gccttccctg accaccctat ctaaaatagc acacccyctc      2520
     ccccatcatg cccatytttc ttaccycgct ttatttttct ycatagcact tatcaccatc      2580
     tgacayacta tatwatttay ttgtttgttt gtttrttgtc tcctccacya gaatgtaagc      2640
     tccatgaggg cagggatttt gtctgttttg ttcactgctg tatccccagc gcctagaaca      2700
     gtgcctggca catagtaggc gctcaataaa tatttgttga atgaatgaat                 2750
//
ID   L1MD2       repbase; DNA   ; ROD   ; 1088 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MD2) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MD2 subfamily; L1MD2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1088
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   18%.
XX
SQ   Sequence 1088 BP; 411 A; 158 C; 196 G; 283 T; 40 other;
     cttgtatcca gaatatataa agaactctca aaactcaaca ataaaaaaac aaacaatcta        60
     attaaaaaat gggcaaaaga catgaagaga catttcacca aagaagatat acaaatggca       120
     aataagcaca tgaaaagatg ttcaacatca ttagctatta gggaaatgca aattaaaacc       180
     acaatgagat atcactacac acctattaga atggctaaaa taaaaaataa tgacaayacc       240
     aaatgctggc gaggatgtgg agaaactgga tcactcatac attgctggtg ggaatgtaaa       300
     atggtacagc cactctggaa aatagtttgg cagtttctta taaagttaaa catacamtta       360
     ccatatgacc cagcaattay actcctaggt atttatccca gagaaatgaa aacttatgtt       420
     cacacaaaaa cttgtacacg aatgttyata gcagctttat tcataatagc cmaaaactgg       480
     aaacaaccca gatgtccttc aacgggtgaa tggttaaaca aactgtggta tatccatacm       540
     atggaatact attcagccat aaaaaggaat gaactattga tacatgcaac aacctggatg       600
     aatctcaaga acattatgct gagtgaaaaa agccagtctc aaaaggttac atactgtatg       660
     attccattta tatarcattc ttgaaacgac aaaactatag agatggagaa cagattagtg       720
     rttgccaggk gttagggatr caggraggag gtggatgtgr ytataaarrg gtagcatgag       780
     rgaatyttta tggtgatgga acwgttctgt atcttgaytg tggtgrtggt tacacgaatn       840
     tatacatgtg ataaaattgc atagaactaa atayryryry rataagtaca agtaaaactg       900
     gcgaaatctg aataagatwn atggrttgta ycaatgtcaa twtcctggtt ktgatattgt       960
     aytatagttt tccaagatgt taccattggg ggaagctagg tgaagaacac acgggatccc      1020
     yctgtattat ttcttacaat tgtntgtgag tktayaatta tttcaaaata aaaagtttaa      1080
     tttaaaaa                                                               1088
//
ID   L1_CC       repbase; DNA   ; ROD   ; 679 BP.
XX
AC   Y00726;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3, Last updated, Version 3)
XX
DE   Guinea-pig LINE repeat sequence.
XX
KW   Repetitive sequence; LINE1; L1; CCL1; L1_CC.
XX
OS   Cavia cutleri
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Hystricognathi; Caviidae; Cavia.
XX
RN   [1]
RP   1-679
RA   Hall L.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (22-JUL-1988)Hall L.,
RL   University of Bristol, Dept. of Biochemistry, School of Medical
RL   Sciences, University walk, Bristol BS8 1TD, United Kingdom..
XX
RN   [2]
RP   1-679
RA   Laird E.J., Jack L., Hall L., Boulton P.A., Parker D.,
RA   Craig K.R.;
RT   "Structure and Expression of the guinea-pig Alpha-lactalbumin
RT   gene.";
RL   Biochem. J 254, 85-94 (1988).
XX
DR   GenBank; Y00726; Positions       1     679.
XX
SQ   Sequence 679 BP; 163 A; 118 C; 122 G; 276 T; 0 other;
     aagcttttta acaagatgag cttccagttg ttgatttttt gtgaacgttt ctatgcaaca        60
     gaagttttgt tcatgaagtc ttttgcctat accaatgtct tcaagagttc tacctagtct       120
     atcttccagc aggtttaaca tttctgtttt aatacttagg ttttgattca tttcaatttt       180
     agtttagagt gtggtgaaag atgtgggtat aattttaatc ttcagcatgt ggaaagccaa       240
     tttttccagc accatttact aaagaggctt ttttccagca aaggtgtttg gcttttttgt       300
     aaaaaataaa ggggctgagt gtgttggagt tgtctctgta tcttctaacc tgttccacta       360
     ttccttgggt ctgttttttt gccagtacca tgctgttttt atcacagtag ctttatggta       420
     taatttcaag tcagggtggg tgatgccccc ttcttggtct ttgttgccca taatttcctg       480
     tactattata ggtctcttct ggttccaaat gaattttata atttctctaa ttctgcaaga       540
     tatgctcttg gaattttaat cagaattgca ttaaatctgt ataatgattt tgaaagcatg       600
     gccattttca ctattggttc ttcctactca agagcaaggg atttcttccc attttctgat       660
     atcctattca atctcctta                                                    679
//
ID   MER2        repbase; DNA   ; ROD   ; 345 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 5, Created)
DT   19-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Interspersed repetitive sequence; MER2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-345
RA   Sheflin L., Celeste A., Woodworth-Gutai M.;
RT   "Recombination in Simian Virus 40-infected cells: Structure of
RT   naturally arising variants ev-2114, ev-2102, and ev-1110.";
RL   J. Biol. Chem 258, 14315-14321 (1983).
XX
RN   [2]
RP   1-345
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the
RT   human genome.";
RL   Nucleic Acids Res 18(1), 137-141 (1990).
XX
RN   [3]
RP   1-345
RA   Smit F.A., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [3] (Consensus)
XX
CC   24 bp terminal inverted repeats, TA target site.
XX
SQ   Sequence 345 BP; 97 A; 69 C; 73 G; 100 T; 6 other;
     cagtcgyccc tccgtatccg tgygttccac atccgtggat tcaaccaacc gcggatcgaa        60
     aatattcagg yaaaaaattg yatggttgcg tctgtactga acatgtacag acttttttnc       120
     ttgtcattat tccctaaaca atacagtata acaactattt acatagcatt tacattgtat       180
     taggtattat aagtaatcta gagatgattt aaagtatacg ggaggatgtg cgtaggttat       240
     atgcaaatac tacgccattt tatatcaggg acttgagcat ccgcggattt tggtatctgc       300
     ggggggtcct ggaaccaatc ccccacggat accgagggat yactg                       345
//
ID   MLT1R       repbase; DNA   ; ROD   ; 1338 BP.
XX
AC   .
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   MLT1-Mammalian LTR retrotransposon internal sequence - a
DE   consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MLT1a subfamily; MLR;
KW   MLT1R.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1338
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   PhD dissertation, Univ Southern California, 1995.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1338 BP; 392 A; 211 C; 358 G; 335 T; 42 other;
     gattttggca ctaggaagtg gggtgcttac gtaacaaata cctaaaaatg tggaagcgac        60
     tttggaactg ggtaataagt agaggctgga agagttttga ggtacatgyt agaaaaagcc       120
     tagatttcct tgaagagact gttggtagaa atatggatat taaaggyaat tctggtgggg       180
     ggctcagaaa ggaagwggag agctatagag aaagctcccg tcgtcttaga gaatacaaaa       240
     atcgtcatga acagaatgtt gctagaaata tgaatgttaa aggtgcttct ggtgaggtct       300
     cagacggaaa tgagggagat gttattgaaa attggaggaa aggtgatcct tgttataaag       360
     tagcaaagaa cttggctgaa ttgtgttcat gtcctagggc tttatggaaa gtagaacttg       420
     yaagtgatga actkggatat tcagctgagg aaatttctaa gcaaagtgtt gagggcgcaa       480
     cctgacttct cctaactgct tatagtaaaa tgtgagagac ataaagatgg aantgttgag       540
     taaaaaggaa ccagaacgta aagatttgga aaattctcag cctgatcatg taacagaaan       600
     nncaatagcg ttctctggaa agaanaccaa ggatgtnncc gngcaaccgt ttgctaaaga       660
     gattagratc gtgactcgtg ggtccaatca accatctcag caraarccar gaatagagat       720
     grggttattt aggaaatatc tgtggaggac tctcttatct gatggctcga acccctatga       780
     cttncatagg agaccgacaa ggnttttgag aatnttacac cagcagaaac actgccaact       840
     tggactraag ggracagaga cgagaaaaaa tgaaggaagr gtggcagacc gaaggtgggg       900
     ctgtctcgtt tcagagcatg gkgtcacccc agcgggcccg gaagatgaat ctcaggactc       960
     agaggcatta gcctccagcc ttaagatcta atgaagtttg ccctgctggg ttttggactt      1020
     gcttgggacc ngtgactcct ttcttyyytt cyatttctcc cttttggaat gggaatatct      1080
     atcctatgcc tgycccaccg ttgtattttg gaagcagata acttgtttna ttrcacaggt      1140
     ccacagatgg agaggaattt tgccyctgaa tgaatctyac cctgagtytc tnccayacyt      1200
     gatgyrgrtg atatttcgct gagattgtgg actaagagtt ggtgctggaa ggggttagac      1260
     attggggaga tgttgctatg ggatgcaggg attttgcatg tgagaaggac atgattatgg      1320
     ggggagcgga gggcaaac                                                    1338
//
ID   MER104      repbase; DNA   ; ROD   ; 185 BP.
XX
AC   .
XX
DT   05-AUG-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; MER104.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-185
RA   Jurka J., Naik A.;
RT   "MER104.";
RL   Direct Submission to Repbase Update (AUG-1998).
XX
CC   [1] (Consensus)
XX
CC   Potentially related to MER33 and CHARLIE5.
XX
SQ   Sequence 185 BP; 74 A; 28 C; 27 G; 56 T; 0 other;
     taccatattt cattgaatct aagatgccat caattgtaag atgcaccatt attttatgta        60
     ccactaagaa agaaaaaaat gctgccaatt aaactataac atgccattaa ttgtaagatg       120
     catcccaatt tcagagatgt taaaatgtga aaaaatgtgc atcttagaat cgatgaaata       180
     tggta                                                                   185
//
ID   RSINE1      repbase; DNA   ; ROD   ; 179 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 3, Created)
DT   22-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   SINE element; RSINE1 family - a consensus.
XX
KW   retroposon; SINE; RSINE1 family; ID; RSINE2; RSINE1.
XX
OS   Rodentia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-179
RA   Kapitonov V.V., Chopra V., Jurka J.;
RT   "RSINE1.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   ID-like SINE element.
XX
SQ   Sequence 179 BP; 54 A; 45 C; 47 G; 27 T; 6 other;
     gggctgggga gatggctcag tnygtaaagt gcttgccgtg caagcatgag gacctgagtt        60
     tgatccccag aacccacata aaaaagaggg agaggacctg aggaagacac cygaggttga       120
     cctctggcyy ccacatayat gtgcacatgt gcacacatgc acacacacac acacacaca        179
//
ID   MER21B      repbase; DNA   ; ROD   ; 795 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   Medium reiteration frequency MER21B repetitive sequence - a
DE   consensus.
XX
KW   Repetitive sequence; MER21B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-795
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-795
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. thesis (USC 1995).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 795 BP; 188 A; 210 C; 159 G; 191 T; 47 other;
     tcaacacaca acacttctgt caccaaacgt gtggrrrttt ttccccacac acaaacaakt        60
     cttcagttct gcggcggaca ccarctgggt gtcctccaat tcarttcagt tctgacacta       120
     wctacctrga gatagcgtca gatcccacag gtttaagggc tcagtcccac aagactgccc       180
     ccacttcaga trccagtcgc aagtctrggt tktcacccgt acttctgacc aactggctat       240
     aaattgttcc cacgacccct ctttaggttc gattaatttg ctagaatrgc tcacaraact       300
     cagggaaaca cttatattta ycggtttatt ataaaggata ttacaaagga tacagatgaa       360
     caaccagatg aagagatrca tagggcgagg tmtgggagag tccngggnnc aggagcttcc       420
     gtgccctctc tggstnnrcc accttccwgg cacctccacg tgttcaccaa cccggaagct       480
     ctccgaaccc tgtccttttg ggtttttatg gaggcttcat tacgtaggca tgaytgatta       540
     catcantggc cattgattat caactcaacc tycagcycct ctccyctccc cagaggttgg       600
     agggtggggc tgaaagttcc aaccytctaa tctgccttgg tctttctrgc gaccagcycc       660
     catccwgrag cntnctaggg gctgcccrcc akgagtcgmc tcattagmac aaaagrncrt       720
     ynctattacc caggarattc caagggtttt aggagytctg tgtcaggaac cggggtcaaa       780
     gaccaaatat tagat                                                        795
//
ID   MLT1F       repbase; DNA   ; ROD   ; 541 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1f
DE   subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1f subfamily; MLT1F.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-541
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 541 BP; 135 A; 137 C; 123 G; 126 T; 20 other;
     tgtggtagcc agcctccaag atggccccca atgatccctg ctcctggtat tcacaycctt        60
     gtatggtcyc ytcctacatt garyyagggc trgtctgtgt gaccaataga atagggcaga       120
     agtgatggcg tgtsacttcc aagaytargt cayaaawaac actgtggytt ctgcyttgnt       180
     ctcttcgggc tactcactct gggggaagcc agctgccatg ctatgaagac actcaagcag       240
     cctatggaga agtccacgtg gsaaggaact gaggtctcct gccaacagcc agcttcgacy       300
     tgccagccat gtgagtgagc catcttggaa gcggatcctc cagccccagt yaagccttca       360
     gatgactgca gccccggctg acatcttgac tgcaacctca tgagagaccc tgagccagaa       420
     ctacccagct aagctgctcc tarattcctg acccacagaa actgtgagat aataaatgtt       480
     trttgtttta agccactaag ttttggggta atttgttacg cagcaataga taactaatac       540
     a                                                                       541
//
ID   MLT1E       repbase; DNA   ; ROD   ; 568 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1e
DE   subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1e subfamily; MLT1E.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-568
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 568 BP; 146 A; 134 C; 137 G; 129 T; 22 other;
     tgtggtaggc agaattctaa ratgmtccca atgatcctcg cctcctggcg taatctcctt        60
     gagtgtgagt aggacctgtg acttgcttct agccaacgga atatggcaaa ggtgatgara       120
     trtcacgtga ttacgcgtac gtgattatgt aasattcagt ctttgmcgtc attcttgccg       180
     agagactctc ctsctggtyt tgaagaagta agctgccacg tcatgagnnn ncnnannaga       240
     rygccgcaag gcaagggnnt ctagagctga gagtcgccct tactgatggg cagcaagaag       300
     caagccacct cagtcctaca gccgcaaaga actgaattct gccaacaacc tagtgagctt       360
     ggaagcagat cctgcccagt cgagcctcca gatgagancg cagccctggc tgacgccttg       420
     actgcagcct tgntagacct tgagcagagg acccagctaa gccgtgccca gactcctgac       480
     ccacagaaac tgtgagataa taaatgtgtg ttgttttaag ccgctaagtt tgtggtaatt       540
     tgttacgcag caatagaaaa ctaacaca                                          568
//
ID   L1ME4       repbase; DNA   ; ROD   ; 596 BP.
XX
AC   .
XX
DT   06-MAY-1999 (Rel. 6.9, Created)
DT   06-MAY-1999 (Rel. 6.9, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1ME4) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1ME4 subfamily; L1ME4.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-596
RA   Jurka J.;
RT   "L1ME4.";
RL   Direct Submission to Repbase Update (MAR-1999).
XX
CC   [1] (Consensus)
XX
CC   An ancient L1 subfamily.
XX
SQ   Sequence 596 BP; 216 A; 80 C; 113 G; 179 T; 8 other;
     tttggcaata tctatcaaaa tcacacatac atttaccctt tgacycagca atcccacttc        60
     taggaattta tcctacagac atacttgcaa catgtacaaa atgacatata tacaaagtta       120
     ntttattgca gcattatttg taatagcaaa aaaytggaaa caacctaaat gtccatcaat       180
     aggaaaatgg ttaaataaat tatggtatat ccatacaatg gaatactatg cagctataaa       240
     aaagaatgaa gaagatctct atgtactgat atggaatgat ctccaggata tattgtttaa       300
     gtgaaaaaag caaggtgcaa gaatagtgta tatagtatgc taccttttgt gtaaaaaaga       360
     aggaaaaata aaaatatata tatatatttg cttatatatg tataaaataa ctctggaaaa       420
     ataaacaaga aactnataac agtggttgcc tcttntgggg ggaggggaac tgggnngntg       480
     ggtggctggg ggacatgtgg gatggacagg gatgggaggg actgactttt cactgtatac       540
     ctttttgtac tttgtacttt ttgaaatttt gaaccatgtg aatgtattac ctattc           596
//
ID   L1PB1       repbase; DNA   ; ROD   ; 902 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1PB1) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1P5; L1PB1 subfamily;
KW   L1PB1.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-902
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
CC   Contains identical ORF2 region consensus (subfam L1P5) as L1PB3.
CC   ORF2 ends at bp 684; average divergence of copies from consensus:
CC   9%.
XX
SQ   Sequence 902 BP; 360 A; 159 C; 171 G; 187 T; 25 other;
     ctaatatcca gaatctataa ggaactcaaa caaatcagca agaaaaaaac aaacaatccc        60
     atcaaaaagt gggctaagga catgaayaga camttctcaa aagaagatat ryaaatggcc       120
     aacaagcata tgaaaaaatg ctcaacatca ctaattatca gggaaatgca aatcaaaacc       180
     acaatgcrat accatcttac tcctgcaaga atggccataa ttaaaaaatc aaaaaataat       240
     agatgttggc gtggatgtgg tgaaaaggga acacttytac actgctggtg ggaatgtaaa       300
     ctagtacaac cactatggaa aacagtatgg agattyctta aagaactaaa agtagaacta       360
     ccatttgatc cagcaatccc actactgggt atctacccar argaaaakaa gtcattatay       420
     gaaaaagaya cttgcacacr catgtttata gcagcacaat tyrcaattgc aaaaatatgg       480
     aaccaaccca aatgcccatc aatcaayrag tggataaaga aaatgtgrta tatatatacc       540
     atggaatact ackcagccat aaaaaagaat gaaataatgg catttgcagc aacctggatg       600
     garytggaga cyattattct aagtgaagta actcaggaat ggaaaaccaa acatyrtatg       660
     ttctcactta taagtgggag ctaagctatg aggatgcaaa ggcgtaagaa tgatacaatg       720
     gactttgggg actcgggaga tcgggrgaaa gggtgggagg ggggtgaggg ataaaagact       780
     acaaattggg tacagtgtac actgctcggg tgatgggtgc accaaaatct cacaaatcac       840
     cactaaagaa cttattcatg taaccaaaca ccacctgttc cccaaaaacc tattgaaata       900
     aa                                                                      902
//
ID   MLT1D       repbase; DNA   ; ROD   ; 505 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1d
DE   subfamily) - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MLT1d subfamily; MER26;
KW   MLT1D.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   334-465
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-505
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [2] (Consensus)
XX
CC   Replaces MER26 sequence.
XX
SQ   Sequence 505 BP; 149 A; 96 C; 138 G; 113 T; 9 other;
     tgtggtaggc wgaataatgg ctccccaaag atgtccacgt cctaatcccc agaacctgtg        60
     aatatgttac cttacatggc aaaagggact ttgcagatgt gattaagtta aggatcttga       120
     gatggggaga ttatcctgga ttatccgggt gggcccaatg taatcacaag ggtccttawa       180
     agagggaggc agagggtcag agtcagaaga aggagatgtg acgatggaag cagrragnga       240
     aaactcaacg ttgctggctt tgaagatgga ggaaggggcc atgagccaag gaatgcgggc       300
     agcctctaga agctggaaaa ggcaaggaaa cggattctcc cctagagcct ccagaargaa       360
     cgcggccctg ccgacacctt gattttagcc cagtgagacy cattttggac ttctgacctc       420
     cagaactgta agataataaa tttgtgttgt tttaagccac taagtttgtg gtaatttgtt       480
     acagcagcma yaggaaacta ataca                                             505
//
ID   L1MB3       repbase; DNA   ; ROD   ; 932 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MB3) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; MER12; L1MB3 subfamily;
KW   L1MB3.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-932
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-932
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [2] (Consensus)
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MA10
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   16%
CC   Replaces MER12 (Acc. No. X59017).
XX
SQ   Sequence 932 BP; 371 A; 132 C; 188 G; 220 T; 21 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgtatg       660
     attccactta tatgaggtac ctagagtagt caaattcata gagacagaaa gtagaatggt       720
     ggttgccagg ggctgggggg aggggggaat ggggagttak tgtttaatgg gtacagagtt       780
     tcagtttggg aagatgaaaa agttctggag atggatggtg gtgatggttg cacaacaatg       840
     tgaatgtact taacgccact gaactgtacg cttaaaaatg gttaaaatgg taaattttat       900
     gttatgtata ttttaccaca attaaaaaaa aa                                     932
//
ID   ZOMBI       repbase; DNA   ; ROD   ; 2806 BP.
XX
AC   .
XX
DT   13-JAN-1998 (Rel. 6.4, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   TIRs; DNA transposon; MER46; TA target; ZOMBI.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2710
RA   Smit F.A., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RP   1-2710
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit F.A.;
RT   "Identification of new medium reiteration frequency repeats in
RT   the genomes of primates, rodentia and lagomorpha.";
RL   Genetica 98, 235-247 (1996).
XX
RN   [3]
RP   1-2806
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?.";
RL   Direct Submission to Repbase Update..
XX
CC   [3] (Consensus)
XX
CC   23 bp terminal inverted repeats and TA target site [1,2].
CC   ZOMBI is an autonomous DNA transposon (its non-autonomous
CC   elements have been identified as ZOMBI_A (MER46 [1,2]) and
CC   ZOMBI_B.
CC   Orientation of ZOMBI has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [3].
XX
SQ   Sequence 2806 BP; 912 A; 540 C; 600 G; 754 T; 0 other;
     caggttgagc atccctaatc caaaaatccg aaatctgaaa tgctccaaaa tctgaaactt        60
     tttgagcgct gacatgacgc cacaagtgga aaattccaca cctgacctta tgtgacgggt       120
     cacagtcaaa acgcaggtgc acaacacaca gtttattcgg cgtccccaag ggaaaaaaga       180
     ccctcccagc ccccttcagc tgcggtatat cttttccgcg cacacccaga ttcccccatg       240
     caagcacgcc cacaaagggt aataaaatgg cacgtgtgca ggctggacac accaacggca       300
     ggttccccac aatgccccca catggggtca agacctacgt gcattactca ctgtgttttt       360
     ttgcttattc tctgctctgt ggtgtaaaga tattgttgaa aatgtcaaaa aggcctgtag       420
     atacccctgt gagtaacaat gataagaaaa aggaagcatt tatgtttatc tatagcacag       480
     aaaagtcaag ctgttggaga aactggacag tggtgtaagt gtgaaacgtc ttacagaaga       540
     gtatggtgtt ggaatgacca ccatatatga cctgaagaaa cagaaggata aactgttgaa       600
     gttctatgct gaaagtgatg aacggaagtt aatgaaaaat aaaaaaacac tgcataaagc       660
     taaaaatgaa gatctcgatc gtgtattgaa agagtggatc cgtcagcatc acagtgaaca       720
     catgccactt aatggtacgc tgatcatgaa acaagcaaag atctgtcaca atgaactgaa       780
     aattgaaggg aactgtgaat attcaacggg ctggttgcag aaatttaaga aaagacacgg       840
     cattacattt ttaaagattt gtggtgataa agcatctgct gatcatgaag cagcggagaa       900
     attcattgac gagtttgcca agatcatcgc tgatgaaaat ctgatgccag aacaagtcta       960
     taatgctgat gaaacatcac cgttttggtg ttattgcccc agaaagacac tgactacagc      1020
     tgatgagaca gcccctacag gaattaagga tgccaaggac agaataactg tgctgggatg      1080
     tgctaatgca gcaggcacgc ataagtgtaa acttgctgtg ataggcaaaa gcttgcgtcc      1140
     ttgctgtttt caaggagtga atttcttacc agtccattat tatgctaaca aaaaggcatg      1200
     gatcaccagg gacatctttt ctgattggtt tcacaaacat tttgtaccag cggcttgtgc      1260
     tcactgcagg gaagctggac tggatgatga ctgcaagatt ttgttattcc ttgacaactg      1320
     ttctgctcat cctccagctg aaattctcat caaaaataat gtttatgcca tgtactttcc      1380
     cccaaatgtg acttcattaa ttcagccatg tgaccagggt atctttagat caatgaagag      1440
     taaatataaa aacactttct tgaacagcat gctagcagca gtgaacagag gcgtgggtgt      1500
     ggaaggtttt caaaaggagt ttagcatgaa ggatgccgta tatgctgttg ccaacgcttg      1560
     gaacacagtg actaaagaca cagttgtgca tgcctggcac aacctctggc ctgcgactgt      1620
     gttcagtgat gatgatgaac caagtggtga ctttgaagga ttctgtatgt caagtgagaa      1680
     aaaaatgatg tctgacctcc ttacatatgc aaaaaatata ccttcagagt ccgtcagtaa      1740
     gctggaagaa gtggatatta aagacatttt taacatcgat aatgaggctc cagttgttca      1800
     ttcattggaa gaagtggata tcaaagaagt cttccacatc gataaatgca ttaccagttg      1860
     ttcaaccatc accggatggt ggaatagccg aaatggttct gaatcaaggt gattgtgatg      1920
     atagtgatga tgaagatgat gacgttaaca ctgcagaaaa agcgcctata gatgacatgg      1980
     tgaaaatgtg tgatgggctt attgaaggac tagagcagcg tgcattcata acagaacaag      2040
     aaatcatgtc agtttataaa atcaaagaga gacttctaag acaaaaacca ttgttaatga      2100
     ggcagatgac tccggaggaa acattttaaa aagccatcca gcagaatgcc tcctcatccc      2160
     tagaggaccc acttcctggt ccctcaactg cttctgatgt ttcttctcac ttagaaaaca      2220
     aaaaccaaaa agcaaaaaaa atacagtgta cagtaacctt ttaatcaaaa cacagcatcg      2280
     tagatggaga ctgaaagcct gccattgttt gttgttgctg ttgtttaaca gctgatacag      2340
     gtattctggt gatgctactg tgctgcttag ttaccctgaa cacatttttt tttcactgta      2400
     ttaatggtat gtcatatttt ttactgttaa gtacttatgt gtgaataagt gtaagaaaat      2460
     gattgcttat cggtagcata taaattcaga gtcaggaatg atggtgatgc caaacaacca      2520
     cagattgtcc acatgggtgg ctgagatagt gacacctttg ctttctgatg gttcaatgta      2580
     cacaaacttt gtttcatgca caaaattatt aaaaatattg tataaaatta ccttcaggct      2640
     atgtgtataa ggtatatatg aaacataaat gaattttgtg tttagacttg ggtcccatcc      2700
     ccaagatatc tcattatgta tatgcaaata ttccaaaatc tggaaaaaaa tccagaattc      2760
     aaacacttct ggtcccaagc atttcggata agggatactc aacctg                     2806
//
ID   MLT1E2      repbase; DNA   ; ROD   ; 593 BP.
XX
AC   .
XX
DT   09-SEP-1998 (Rel. 6.6, Created)
DT   09-SEP-1998 (Rel. 6.6, Last updated, Version 1)
XX
DE   LTR from retrotransposable MaLR element - a consensus.
XX
KW   MaLR family; MLT1E; MLT1; MLT1E2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-593
RA   Jurka J.;
RT   "MLT1E2.";
RL   Direct Submission to Repbase Update (SEP-1998).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 593 BP; 188 A; 118 C; 144 G; 140 T; 3 other;
     tgccctaatc ctggaaccta tgaatacgtt acatnacata gcaaaaggga ttttgcagat        60
     gtaattaagg ttactaacct taaaataggg agattancct ggattatctg ggtgggccta       120
     atctaatcac atgagccctt aaaagcagag agttttctcc ggctgatagc aggaaatgta       180
     aagcagaaga ggaagtcaga gagatttgaa gcatgagaag rattcgatgt accattgctg       240
     gctttgaaga tggagggggc cacgatgcaa gaaatggaag aggcctctag gagctgagag       300
     tggctcccag ctgacagcca gcaaggaaat ggggacctca gtcctacaac cacaaggaac       360
     tgaattctgc caacaacctg aatgagcttg gaagtggatt cttccccaga gcctccagat       420
     aagagcccag cctagctgac acctttgatt tcagccttgt gagaccttaa gcagagaacc       480
     cagttaagcc tacctggact tctgacctac agaactgtga gataataaat gggtgttgtt       540
     ttaagctgct aaatttgtgg taatttgtta cacagcaata gaaaactaat aca              593
//
ID   L1MED_5     repbase; DNA   ; ROD   ; 959 BP.
XX
AC   .
XX
DT   11-FEB-2000 (Rel. 7.1, Created)
DT   11-FEB-2000 (Rel. 7.1, Last updated, Version 1)
XX
DE   L1MED_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L1MEC_5; L1MED_5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-959
RA   Jurka J.;
RT   "L1MED_5.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [1] (Consensus)
XX
CC   Homologous to L1 ORF1. Most similar to L1MEC_5 (71%) and L1P_MA2.
XX
SQ   Sequence 959 BP; 512 A; 108 C; 127 G; 200 T; 12 other;
     aaatcacaaa aacacacaaa gaaacaagac accantgagt aaatcagcag aaacaataaa        60
     caacagacac acanagactt cagatatttg gaattttaga taaataatat aaaataaata       120
     ttttaatata tttaaagaaa taaaaaatta aaaaattaaa aaaaaaaaat aaaaaaaatt       180
     attaaaaaaa ttaaaaagca gatttaaaaa aaaaaaaatc aaatagaact tttagaaata       240
     aaaaatataa taattaaaat ttaaaaattt cattggaaag ttttaacagc agattagacc       300
     aagtagaaga gagaattagt gaantggaag atagatttaa agaaattatc cagaatgaag       360
     cacagagaga aaaaaaaaaa aaaaataaaa aaaaaaaaaa aaaatatgca aaaaatatgg       420
     gaaaatttca aaatatntaa aatatatcta ataagaattt gtgttccaaa aagagagaat       480
     agagagaatg aaaaanggga agaaaaaata tttgaagaga taatggctgn aaaattttcc       540
     agaattgatg aaagacatca atcctcagat tcaagaagct caaagaatac caagcagaat       600
     aaatacaaaa aaatttacat ctagacacat aataatcaaa ctgtcaaaag tcaaagataa       660
     aaaaaagatc ttaaaagcag ccagagagaa aagatagatt acctaaaaag gagcaacaat       720
     aagactaaca gcagacttct cancagaaac catacaagcc agaagacagt ggaatgaaat       780
     ctttaaagtg ctgaaagaaa ataaaaaant atcctnctat caatctagaa ttgtatatcc       840
     agtgaaacta accttcaaaa atgaaggaga aataaaaact ttttcagaca agcaaaaana       900
     anagctgagg gaatttatta ccaccagacc tgcaagaaat nctaaaggaa gtacttcag        959
//
ID   HERVS71     repbase; DNA   ; ROD   ; 5491 BP.
XX
AC   Z70664;
XX
DT   27-JAN-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Internal sequence of endogenous retrovirus HERVS71.
XX
KW   Endogenous retrovirus S71; simian sarcoma virus; HERVS71.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-5491
RA   Werner T., Brack-Werner R., Leib-Moesch C., Backhaus H., Erfle V.,
RA   Hehlmann R.;
RT   "S71 is a phylogenetically distinct human endogenous retroviral
RT   element with structural and sequence homology to simian sarcoma
RT   virus (SSV).";
RL   Virology 174, 225-238 (1990).
XX
RN   [2]
RP   1-5491
RA   Kabat P., Tristem M., Opavsky R., Pastorek J.;
RT   "Human endogenous retrovirus HC2 is a new member of the S71
RT   retroviral subgroup with a full-length pol gene.";
RL   Virology 226, 83-94 (1996).
XX
DR   GenBank; Z70664; Positions       1    5491.
XX
CC   LTR's of HERVS71 are listed in REPBASE as LTR6 sequences.
XX
SQ   Sequence 5491 BP; 1452 A; 1521 C; 1160 G; 1358 T; 0 other;
     ggatccaaaa tagccaccct gcagacggcc ttgctcacct tttctgtcat cccataactt        60
     ttccagtgcc cttaaataac acactatgta cacaaaccta tgcctgtgct gctttactct       120
     gtctggaccc ttattctatc cccctgtggc tactctccta ccttaggaaa gatctgagtg       180
     gcccctttcc tccttacccc catcccttaa cccacacagc tcgttttcct gtgtcacagc       240
     aagtccagca cctccaagac ttggctctgc tctccatcct aaaaccctta aaagaaaggg       300
     ctgagtttga actttttgcc tttgagtcgg ggagacacca aagatatttg gctataagtc       360
     aaaaaggaag gggggggtca cataggtccc actggcctca gacccacctc ttgtcctctc       420
     tctagatctc aaagcttaaa gagacagatc ttatgtggca agaaatgttg gctatagttg       480
     ttttcctact tcttctggtt ataatacttc tgttcttcca atactacagc cccccaggcc       540
     atgaatatct ctgtctgtgc tgggtttaat atttctgctt aaaccttgtt aattgcctcc       600
     agaatgggaa actcttcttc ctggccccgt agagattaca gccctctcca atgtatgttg       660
     cagaatttct ctctgggttc tcagaggatt acggagtcca ccttaagaaa ggcaaactcc       720
     agacactctg tgaagtagaa tggccacagt ttggaactgg gtggcaccag aagggtcatt       780
     aaacctcaca actgttcagg ctgtgtggcg ggtcatggct ggaactcccg gacaccctga       840
     tcagtttcct tacattgatc aatggctaga tttggtccag agccctcctc catggctccg       900
     ctcacgtgcc attcatgatc ccacctccaa ggtccttttg agctggacca cacttttgcc       960
     ccaaccctca cgtcggctcc tcctgtacag tctccttctg aagaagagga aagttctctt      1020
     cacccatttc tgcctcccta taacctcctg cccacccccc ccccccgccc cagaatattt      1080
     ccttgtctcc tcgactacat cccctgtggc ctctccacct atagccaccc aattacggca      1140
     tcggctggag aggtggccct ccttctccca ctgacagagg cccaaatcct ctgggcaatg      1200
     aggctctgct ccatttttag tttatgtccc cttctctgtt tctgacctgt acaactggaa      1260
     ggctcataat cccccccttt tctgaaaagc cccaggtctt gacctcactg atggagtccg      1320
     tgctccggaa tcaccggccc acctgggatg actgtcagca acttctttta acccttttca      1380
     cctctgaaga gagggaccat atccgaagaa aggtcagaaa gtatttcctc acatcagctg      1440
     gtagaccaga ggaggaagcc cgggacctcc ttgaggagac ttttccctct acctggcctg      1500
     attgggatac aaaatcctcg ggtgggaaga gagctttgga taattttcac tggtatgtcc      1560
     ttgtgggtat caagggagcc actcaaaaac ccatgaatct gtccaagaca actgaagctg      1620
     tccaggggcc taatgagtca ccaggagtgt ttctagaacg cctcctggag gcctatcaga      1680
     tttacacccc ttttgacccg gaggctcccg agaatagccg tgctattaat ttggcatttg      1740
     tgactcaggt agcccctgat attataagaa aattacaaaa gctggaagga tttgctggaa      1800
     tgaacagcag ccaacttttc aaatagccca gaaagttttt gacaattgag agtttgaaag      1860
     gcaaaaacag gtagctcagg cagctgaaaa ggctgctgac aaagcatcaa aaagacaggc      1920
     aaagatctta gtggctgcca tccaaggaag caagaaggca gggcccccat cacagagcac      1980
     cagccagggg accccaggtc cccaccagaa aggccaaaaa ggtgagcagg ctcccctaca      2040
     aagaaaccaa tgtgcttatt gcaaacaaat tggacacagg aaaaaagaat gctcattaaa      2100
     accagaggaa aaacaagaga agaaaaaggt cctcaccctc cctgctgtgg atgaatctga      2160
     agattgacag ggccggggct gccacttcct tcacccccag gagcccttgg tgactgccac      2220
     agtgggggcc cagcctgtat gcttcctaat cgacactggg gcggaagact tggtactgca      2280
     aacacccttg ggcagtgtct ctaataaaaa ggtggctgtg caagggactt cataagcttc      2340
     ataagctgca ggcatccatc tccttctcag cccaataagc tcacctcaca ttaggggacc      2400
     caacaccctc taccacccag ctcctgctaa ccaccccttt gtcagaggaa tatctcttag      2460
     tttcaccctc acaaccgctg gagaataaaa ctaatcctct cctactggat ttacagactc      2520
     tctttcctca agtctgggcc aagtcaaacc cccccaggac tggcaaagca ccatctgcca      2580
     gtagttgtag aactcctggc cactgccctg ccagtccagg taaaacaata tcctatgagt      2640
     cagtgggcta gagagggaat caatccccat attcagtctg cctggaatac tccatttttg      2700
     ctggtccaga aacctggaac aaatgattac cggcctgtac aggacttgca ggaagttaac      2760
     aagtggacag tcactgtcca tccaactgtc cctaaccctt atattttact cggcctgctt      2820
     ccaccagaac atacagcata cactgttctt gacttaaagg atgctttctt tgctattcct      2880
     ctggccccta aaagccaacc tatatttgct tctgaatgga tggaccctgg ctcaggagac      2940
     accactcaat taacctggac ttggttaccc cagggtttaa aaaattcccc cacccttttt      3000
     ggggaagccc tccaacaaga tcttataccg ttctgagcca gtcaccctaa ctgcacgctt      3060
     ctccagtaca tagacgacct gtttttggct actgaaacca ctgacagctg cctgcaacat      3120
     actagggacc tactttacct ccttcaggaa ctcgggtatt gggtctcagc caagaaggcc      3180
     cagctttgtc ttcccagact tttctaccta ggatacaaga taaacaaggg agaaagggca      3240
     cttgccactg ctcgaaagga agccatcctg caaatcccca ctcccaccac taggagatgg      3300
     gtacatgaat tcttaggggc tgtgggatac tgtcgtttat ggatattggg gttcgcagaa      3360
     atcaccaagc ccctgtacac cactaccaga gggaatggcc cacatgtttg gactgacaaa      3420
     gaacaggctt ttcaaaatct aaagaaggca ttaactgagg tccctgctct tgccctccca      3480
     aatatctcag aaccatttca tctttttgtt catgaaagcc agggagtcac taaaggggta      3540
     ctcactcaaa ctttaggacc atggtgatgc ccggtggcct atttgtctaa gatactggac      3600
     cctgtggctc cgggtgacca agttgtctgt gagccatagc ggcaaaagca agcctggtcc      3660
     aggaggctga taaactgact ctgggccaga atttaaccct tatggctcct catgccatag      3720
     agactttgct acaaaggcgc tctggcaaat ggatgtcgaa tgctcacatc ctgcagtatc      3780
     agagtttact gttagatcag ccttggttaa ctttctctcc cacaaggtgt ttaaatccag      3840
     ctacctttct ccctgatcca gaccttacca cacctgtcca tgactgccaa gaactgttag      3900
     agactacata aactggccga cctgatctcc aagatgtgcc tctaaaggag gtggactcca      3960
     ctctgtttac tgacagcagc agcttccttg aacagggagt aggaaaggct ggtgcagccg      4020
     ttactatgga gacagatgta ctgtgggccc aggcactgcc ggcaggtacc tcagcacaga      4080
     aggctgaatt ggtcaccttc actcaggctc tctgatgggg taaggacaaa cgtattaaca      4140
     tctacactga cagcaggtat gtttttccta ctgtacatgt acacaaagcc atctatcaag      4200
     agtgagggct actcaccagg aaagactatt aaaaacaaag aagaaatttt ggccctgctt      4260
     gaagctgttt ggcttcctcc gcaggtggct gtaattcact gcaaatgtca tcaaacagaa      4320
     ggcatggcta ttgcctgtgg taaccaaaaa gcaggctctg cagctcgaga ggcagcttgg      4380
     ctcccagtca cgcctttgac cctgctgccc actgtgtcct ttccgcaacc tgacctacca      4440
     gaccacccac aatactcccc agaggaagaa aaacaagctt cagatctttg ggccagtaaa      4500
     tatcaggaag gtttggtgga ttcttcctga ttccagaatc tttattgccc caagtcccct      4560
     gggaaacttt aatcaatcat ctgcattctg ccacccattt gggaggaata aaactggccc      4620
     agcttcttag gagccatttc aacatccccc accttcagga cttaactaac caagcagctc      4680
     tctggtgtat ggattgtgct caggtaaaca ccaaacaagg tcctaagccc agctcagtcc      4740
     accctccagg gaggctctcc ccgagaaagg tgggaagttg actttacaga aataaaacca      4800
     cactgggcag ggtataaata cctcctagtg ctaatagaca ccttttcggg atggactaag      4860
     gcatttacca ctggaaacga aactgccacc atggtagtta ggcttttact cattaaaatc      4920
     atctctcaac atgggctgcc tgttgccata gggtctgata atggaccagc cttcacctcg      4980
     tccatggctc agtcagtcag caaggcatta aacattaaat ggaaactcca ttgcacctat      5040
     tgaccccaga gctctggaca ggtagaacgc atgaaccaca caataaaaag tactcttact      5100
     aagttaatcc tagagaccag tgagaattgg gtaaagctcc ttcctttagc ccttcttaga      5160
     gtaagataca ccacttactg ggctgggttt tcaccttttg aaatcatgta tggaagggct      5220
     cctctatctt gcctaagcta agggatacca atttagcaga aatctcacaa gctaatttgt      5280
     tcagtacctg cagtctctcc aacaggtatg agacaccatc cagccacttg tccagggagc      5340
     acactccaat ccagttcctg accagactgg ccctgccact ttttccagcc aggtgactta      5400
     gtataggtta aaaagttcca gaaggaagga ttcactcctg cctgaaaagg acctcatact      5460
     gtcatcctca ccacgccgat ggctctgaaa g                                     5491
//
ID   MER104A     repbase; DNA   ; ROD   ; 698 BP.
XX
AC   .
XX
DT   26-JAN-2000 (Rel. 7, Created)
DT   26-JAN-2000 (Rel. 7, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; MER104A.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-698
RA   Kapitonov V.V., Jurka J.;
RT   "MER104A.";
RL   Direct Submission to Repbase Update (JAN-2000).
XX
CC   [1] (Consensus)
XX
CC   MER104A has 20-bp TIR which includes putative duplication of
CC   TA target-site. There are about 100-200 copies of MER104A in
CC   the human genome, they are ~74% identical to the consensus
CC   sequence.
XX
SQ   Sequence 698 BP; 227 A; 130 C; 102 G; 232 T; 7 other;
     tatttcattg aatctaagat gccatcgatt ataagataca ycattatttt atgtatcact        60
     aagaaaaaaa aatgctgcca attaaactat gacacaatgc ttttcttatc attagaattt       120
     twtattttat acttattgaa agagctcttt tagatttatt tagacataga tttttatcat       180
     atatcactct tgtgcataca taaaaaggaa aatataagta aaataaattg gttaaggtat       240
     tcctaaaact tcttcacatt cagagtccaa ctcttctgaa tcactttcta ctcagaatca       300
     tcratgtcca ttttcccwsa catcgtattg tcccatcaag agcgttggtg atgcagcatt       360
     tcttaaaaga gtgctccact attgtctgga ttttcttcca agccgctgac atccattctg       420
     ccacctgaag gtgtcaatag aarattttca gacaactatg attcatgttc cttcctcaaa       480
     tggtccttaa atgatttgtt gactgaaata tcaagragtt gcaattgtcc agtcatgcca       540
     ctaggaataa actatgttca ttcatgtata ggcaatgaca actacatcac aactgccgcc       600
     tggctgacag caattgtaag atgccatcga ttgtaagacg catcccgatt tcagagatgt       660
     taaatgtgaa aaatgtgtat cttagaatca atgaaata                               698
//
ID   L1MD_5      repbase; DNA   ; ROD   ; 2728 BP.
XX
AC   .
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-FEB-2000 (Rel. 7.1, Last updated, Version 3)
XX
DE   Partial L1MD LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1MD_5; MER79; L1M6_5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   500-1
RA   Smit F.A.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [2]
RP   1-1604
RA   Jurka J., Walichiewicz J., Kapitonov V.V.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (28-JUL-1997).
XX
RN   [3]
RP   1-1604
RA   Smit F.A.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (19-AUG-1997).
XX
RN   [4]
RP   1605-2728
RA   Jurka J.;
RT   "L1MD_5.";
RL   Direct Submission to Repbase Update (02-FEB-2000).
XX
CC   5' end of L1M subfamilies.
CC   Originally expanded to 1619 bp and classified as a 5'-portion of
CC   L1
CC   (Jurka et al. [2]). A shorter version submitted by A.F.A. Smit on
CC   Aug. 6 - deposited in the Appendix. Minor refinements of the 1619
CC   bp consensus [2] worked out by A.F.A. Smit (August 19, 1997 [3]).
CC   Replaces MER79 [1] and L1M6_5 [2]. Average divergence from
CC   consensus is
CC   24%. Appears to be 5' end of L1MD1 and L1MD2 subfamily LINEs.
XX
SQ   Sequence 2728 BP; 1032 A; 580 C; 593 G; 509 T; 14 other;
     ttaaaaacaa agcgggagac ttccgcttcc gggaagatgg agtagacgta cttttcccta        60
     ttcctcccgc taagtacaac taaaaaccct ggacattata tataaaacaa acataagaag       120
     actctgaaag gtggagagaa gaaggcagac cggctaggga cctcgggacc cgaggaacga       180
     cacggtagtg agttccctgg gttttctttt tgcctcatat atcccagact tggagctgaa       240
     gaagccggca acccggaaac gccaacgggc acagacaaaa aaagccccaa caaaagcctg       300
     ctctctctag ccaaaggacc aggaaagggg cagcctagca agacagaaaa cttttagaca       360
     ataaccgctc tactccagcc aaacaccaca gaaaaaactg tggccccacc cccacccacg       420
     ccagcaaagg ccgagtgggg agcctagact tccaccctca ccaggctgta acgaggcgcc       480
     ccaacacctc caccgggatg gtgtcagaga aggccaagta gggagctggg actttcatcc       540
     ccgccaggcg gtaatgaggc ccmccttccc cttgccmctg cggtgtcagt ggagaccacg       600
     tggggagcct ggacttccac ccccacccgg cagtaatgag gcgcccctcc ccctccctac       660
     tggggtggtg tcagaggagg cctagtggag agtcgggact ttcaccaccg cccagcggta       720
     atgaagccac ctcctcctct tgccmccatg gtgtcagtgg aggccacgtg gggagcagta       780
     atgaggcact cctacccctc ccagccaggg aggtatcagc ggaggcctag tggggagccg       840
     aactcccacc cccgcccagc agtaacgagg agcccctccc tcacctcggg tgtcaacgga       900
     ggccgagtgg ggaacctgga cttctacccc cacctggcag taatgaggca gcgcccctnc       960
     ccctcycctg ccggagcggt gtcagaggaa gccggctaaa acagaaggtt taaataagat      1020
     ccagagtctc ataacataat acccaaaatg tccaggtttc aatcgaaaat cactcgtcat      1080
     accaagaacc aggaaratct caaactgaat gagaaaagac aatcaataga cgccaacacc      1140
     gagatgacag agatgttaga attatctgac aaagatttta aagcagccat cataaaaaat      1200
     gcttcaataa gcaattacga acgtgcttga aacaagaraa aagtagaaag cctcagcaaa      1260
     gaaatagaaa gtctcagcaa agaaatagaa gatataaaga agaaccaaat ggaaatttta      1320
     gaactgaaaa atacaataac cgaaataaaa anctcaatgr atgggctcaa tagcagaatg      1380
     gaggggacag aggaaagaac cagtgaactt gaagatagag caacagaaat tacccattct      1440
     gaacaataga gagaaaatag attggaaaaa aaaatggaca gagcctcagg gacctgtggg      1500
     actataacaa aagatctaac attcgtgtca tcggagtccc agaggagagg aaaaagagrr      1560
     tagtatttga agaaataatg gctgaaaatt tcccaaattt ggcaaaagac ataaacctac      1620
     agatagattc aagaagctga gtgaacccca aacaggataa acccaaagaa atccacacca      1680
     agacacatca tagtcaaact tctgaaaact aaagacaaag aaaaaaaaat catcttgaaa      1740
     gcagcgagag agaaatgaca ccttacctat aggggaaaaa caattcaaat gacagtggat      1800
     ttctcatcag aaaccatgga ggccagaagg aagtggcaca acaatttttt caagtgctga      1860
     aagaaaagaa ctgtcaaccc agaattctat atccagyaaa aatatccttc aggaatgaag      1920
     gggaaatcaa gacattctca gatgaagaaa aactaagaga atttgttacc agcagaccta      1980
     ccctaaaaga atggctaaag gaagttctct aaacagaaag gaaatgataa aagaaggaat      2040
     cttggaacat caggaaggaa gaaagaacat agtaagaagc aaaaatatgg gtaaatacaa      2100
     tagactttcc ttctcctctt gagttttcta aattatgttt gatggttgaa gcaaaaatta      2160
     taacactgtc tgatgtggtt ctngcnaaaa atgtatgtag aggaaatatt taagacaatt      2220
     atattataaa ttgggggagg gtaaagggac ataaagggag gtaaggtttc tacacttcac      2280
     ttgaactggt aaaatgataa caccagtaga ctgtgataag ttatgtatat ataatgtaat      2340
     acctagagca accactaaaa aagctataca aagagatata ctcaaaaaca ctatagataa      2400
     atcaaaatgg aattctaaaa aaaatgttca agtaacccac aggaaggcag gaaaaagaaa      2460
     acagagaaat gaaaaacaga acaaacagaa aacaaaaaat aaaatggcag acttaagccc      2520
     taacatatca ataattacat taaatgtaaa tggtctaaat acaccaatta aaagacagag      2580
     agattggcag agtggattaa aaaacatgac ccaactatat gctgtctaca agaaactcac      2640
     ttcaaatata ataatatagg caggttgaaa gtaaaaggat ggaaaaagat atatcatgca      2700
     aacattaatc aaaagaaagc aggagtgg                                         2728
//
ID   L1MC4       repbase; DNA   ; ROD   ; 2724 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MC4) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC4 subfamily; MER42C;
KW   L1MC4.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1187-2724
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-2724
RA   Smit F.A.;
RT   "L1MC4.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [2] (Consensus)
XX
CC   bp 1 to 1180 are temporarily identical to L1MC3
CC   Replaces MER42C.
XX
SQ   Sequence 2724 BP; 1020 A; 421 C; 541 G; 672 T; 70 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgaaacta ttttatatgt attgtaggat      1200
     tgagcaaata agtaaacgca ttgaagataa tgggagccag gtttctcact gtcggagaag      1260
     ggagttacaa atatggaatg ggggaagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccactg agagggccta gaagcaatga caccccagta gcaatgagca cacctagcgc      1440
     ccagatcttg gtttctaaat accattctcc actaaaagga accagggctc cttggagaaa      1500
     tggctgattc taggactagg gcaggaaatg tacaagatga gcctggaaca tcttgctrtg      1560
     ccagaaaata aggaagtgct caaaaaatga trggggtatg tcaaaaggac acagragcca      1620
     gcttgaaggg gctcccactg gccaaatctg ggacaatttg agcatcaaaa taaataacgg      1680
     tagtaatgga ttataactca ttgaataaaa taaatatcca tgagttcata ctaatataaa      1740
     taaatgaata aaagaaataa ataaataaga ragaaaggaa agytcttctt acagtagaat      1800
     gccaactaay aaatgtagaa ggaataaaat aatagaaaaa tcaccatttg gcaaayacca      1860
     cagtaataan tgtttcaggc aagaaccatc gatagatgct aaaattagtg ggcgaaartt      1920
     tgatgagaaa cgggatattt gcatagtctc aaagtatctc yccacaagat atttattaat      1980
     tayaaaggga aaaatagtra ctttacagta gagaaacctg gcagacacca ccttaaccaa      2040
     gtgatcaaag ttancatcac caataatgag acaaattgac atcatgcgcy tcctgatgtg      2100
     atgcgccgag aaggacacaa catcacttct gtgatattcy tgccaaaaat gcataacctg      2160
     aatctaatca tragaaaata tcagacaaac ccaaattgag ggacattcta caaaataact      2220
     ggcctgtact cttcaaaaat gtcaaggtca tgaaagacaa ggaaagactg aggaactgtt      2280
     ycagattgac ggaagactag agacatgaca actaaatgca acgcgtgatc ctggattgga      2340
     tcctggatcg agaaacggtg ggagtttkta yctataaagg acattattgg gacaattggc      2400
     gaaatttgaa taaggtctgt agattagata atagtattgt atcaatgtta atttcctgat      2460
     tttgataatt gtactgtggt tatgtaagag aatgtccttg tttttaggaa atacacactg      2520
     aagtatttag gggtaaargg ncatsatgtc tgcaacttac tctcaaatgg ttcagraaaa      2580
     aaaatnnata tayataarya gagaatgata aagcaaatgc ggcaaaatgt taacaattgg      2640
     tgaatctggg tgaagggtat acgggwgttc tttgtactat tcttgcaact tttctgtaag      2700
     tttgaaatta tttcaaaata aaaa                                             2724
//
ID   RMER10A     repbase; DNA   ; ROD   ; 389 BP.
XX
AC   .
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   putative long terminal repeat; RMER10A.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RP   1-389
RA   Smit F.A.;
RT   "RMER10A.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Average divergence from consensus 19%.
XX
SQ   Sequence 389 BP; 75 A; 137 C; 75 G; 101 T; 1 other;
     tgtttggttt cgaaccccgg acaaggggct gaggtgcata ttttacatat caaagcagac        60
     ctggcctcca ggttctccca gcatccctca gtccctacct ggcatacccc gcccccaacc       120
     ctgaactttc cagcccaggg gctgggctgc ccttccccca gaggctcttc cctatataat       180
     ccagacattt tggtctcccc gttctctctc tgcacatggg cactttctct tccctcctcc       240
     ctcctacccc gtccccatgg cgacttccct ggcctcggtc cttggggcca gtgaactcac       300
     ccgagagcag yttcccaata aacctgcctt caatataatc taatctggct tgaattggct       360
     catttcaccg gcggagaaat aatttatca                                         389
//
ID   L1MD2       repbase; DNA   ; ROD   ; 1087 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 5, Created)
DT   20-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MD2) - a consensus sequence.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MD2 subfamily; L1MD2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1087
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
CC   Temporarily contains ORF2 region consensus of L1MB7 (subfam L1M4)
CC   ORF2 ends at bp 675.
XX
SQ   Sequence 1087 BP; 416 A; 154 C; 190 G; 272 T; 55 other;
     yttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga yttgaataga tatttctcca aagaagatat ayaaatggcc       120
     aataagcaca tgaaaagatr ctcaacatca ttagtcatca gggaaatgca aatyaaaacc       180
     acaatgagat aycacttcac acccaytaga atggctaaaa ttaaaaagac agrmaatamc       240
     aartgttggy raggatgtrg agaaaytgga achctcatac aytgctggtg ggaatgtaaa       300
     atggtacarc yactttggaa aacagtttgg cagttcctca aaaagttaam aatagagtta       360
     ccatatgacc cagcaattyc actcctaggt atwtacccaa gagaaatgaa aacatayrtc       420
     cayacaaaaa cttgtacaca aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aatratwgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagcmat aaaaaggaat gaagtamtga tmyatgcaac aacatggatg       600
     aaccttgaaa acattatgct aagtgaaaga agccarrcac aaaagrccac atattgtatg       660
     attccattta tataacattc ttaaaacgac aaaactatag agatggagaa cagattagtg       720
     rttgccaggk gttagggatr caggraggag gtggatgtgr ytataaarrg gtagcatgag       780
     rgaatyttta tggtgatgga acwgttctgt atcttgaytg tggtgrtggt tacacgaatn       840
     tatacatgtg ataaaattgc atagaactaa atacacacac acacataagt acaagtaaaa       900
     ctggcgaaat ctgaataaga ttratggatt gtaycaatgt caatttcctg gttktgatat       960
     tgtaytatag ttttccaaga tgttaccatt gggggaagct gggtgaaggg tacacgggat      1020
     ctctctgtay tatttcttac aattgtctgt gagtktayaa ttatttcaaa ataaagttta      1080
     atttaaa                                                                1087
//
ID   MER77       repbase; DNA   ; ROD   ; 650 BP.
XX
AC   .
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER77 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER77.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-650
RA   Smit F.A.;
RT   "MER77.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   Related to MER68 and MER21.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
SQ   Sequence 650 BP; 164 A; 161 C; 156 G; 137 T; 32 other;
     actacggggg gaggtgtcaa attcaaaggt ctccaagacm accctcctgt ttartgattc        60
     gctagaagga ctcacagaac tcagaaaagc cgttatactc acagttacgg tttattacag       120
     tgaaaggata cagattaaag tcagcaaagg graaaggcac ataggncagn gtccaagaga       180
     rmcaggcacg rgcttccagt tgtcctctcc cggcggagtc gtrcgggcag cgcttaattc       240
     tcccagcaac grtgtgtgac agcacgcatg aagtattgcc aaccagggaa gctcacccga       300
     gccttggtgt ccagagtttt trttgggggt cggtnanata ggcatggntg accccgcagc       360
     atggctgacc ttggtcttct caggcttgag ccncccaagc atggctgacc tnagttactc       420
     agtctycagc ccctccagar gtcarryacc gtgtagccta aggcccccac cataaatcac       480
     attgttagca trractgtcc ggtatggccc aaggccytcg cagataaaca aagayactyt       540
     tatcaggcag gacattccaa gggcttagag gttatctccc arrgcctgag gataamcgag       600
     ggccaganct ttctttgggc aaggttaatc ctttactgya yaagaccaca                  650
//
ID   IAPEY3_I    repbase; DNA   ; ROD   ; 7680 BP.
XX
AC   .
XX
DT   30-JAN-2004 (Rel. 9, Created)
DT   30-JAN-2004 (Rel. 9, Last updated, Version 1)
XX
DE   Mouse family of LTR retrotransposons - a consensus.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERVK; IAPEY3;
KW   IAPEY3_I; IAPEY3_LTR; LTR.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RA   Karolchik D., Baertsch R., Diekhans M., Furey S.T., Hinrichs A.,
RA   Lu T.Y., Roskin M.K., Schwartz M., Sugnet W.C., Thomas J.D.,
RA   Weber J.R., Haussler D., Kent J.W.;
RT   "The UCSC Genome Browser Database.";
RL   Nucleic Acids Res 31, 51-54 (2003).
XX
RN   [2]
RP   1-7680
RA   Pavlicek A., Jurka J.;
RT   "IAPEY3_I - a mouse subfamily of LTR retrotransposons.";
RL   Direct Submission to Repbase Update (JAN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the UC Santa Cruz
CC   genome annotation. Internal sequence of the IAPEY3 subfamily.
CC   LTRs are listed as IAPEY3_LTR. IAPEY3_I is 80% identical
CC   to IAPEYI. The IAPEY3 subfamily is young and some members still
CC   contain intact ORFs. 6 bp TSDs.
CC   IAPEY3_I_ORF: 890-1856 (322 aa) gag polyprotein
CC   MRKKDTIQMKGELISHRKSQKRLETKVSSSQLAARPPGRRPLGPSAPPPYVQRYHSDSFIPKEEQRKMQQ
CC   AFPVFEGADGGRVHAPVEYIQIKELAESVRNYGVSANFTIAQVERLATLAMTPGDWMTVVKAAVPNMGMY
CC   LEWKALWQDSCQTQARANATVEGDQRTWTFELLTGQGQHAANQTNYHWGAYAQISAAAVKAWKALSRKGE
CC   ASGHLTKIIQGAQESFSDFVARMTEAAGRIFGDPEAAMPLIEQLVYEQATQECRAAITPRKSKGLQDWLK
CC   VCRELGGPLTNAGLAAAILQGQRRSDTAELKLCYNCGKPGHF
CC   IAPEY3_I_ORF: 3149-5549 (800 aa) pol polyprotein, RT, IN, RNase
CC   MILEQLMHKCACLGQFSEGYHCFLPYPKIGEIIIIDIKDCFFSIPLCPQDRQRFAFTIPAINHLEPDQRY
CC   QWKVLPQGMANSPTMCQLYVQLALKSVRNHFPSLLLVLYMDDILICHKNSQLLQDAYPILIKTLGQWGLQ
CC   VATEKVQVAQMGTFLGSLIYPDKIVPQKLEIRKDQLHTLNDFQKLLGDINWLRPFLKIPSAELKPLFDIL
CC   EGDTHISSHRALTPAACQALQTIEKALQDAQLQRIDESKSFELCVLKTAQLPTAVLWQNGPLLWVHPNAS
CC   PAKIIEWYPNAVAQLALRGIKAAITHFGKEPHILIVPYTSAQVQTLAATTDDWAVLVTSYSGQIDNHYPK
CC   HPILQFALTQAIVFPVITAKHPLADGVVVYTDGSKSGIGAYVVNDQVTSKQYNETSPQVIECLVVLEVLK
CC   TFPGPLNIVSDSLYVVNAVNTLEVAGLNKPSSKLAHIFQQIQSALLHRRHLVYITHVRAHSGLPGPMSHG
CC   NDLADKATRIVAAALSSQAEAAREFHKRFHVTAETLRRRFYFNQKRSSDIVTQCQNCCQFLPTPHVGVNP
CC   RGVRPLQVWQMDVTHISSFGRNQYLHVSIDTCSGVMFATPLTGEKASHVIQHCLEAWSAWGKPTILKTDN
CC   GPAYTSAKFQQFCHQMDVTHLTGLPYNPQGQGIVERAHRTLKSYFIKQKGGVDETLPSVPRVAVSMALFT
CC   LNFLNLDEQGRSAADRHSSDPDRPKEMVKWKDVLTGLWKGPDPILIRSRGAVCVFPQSEDNPFWLPERLT
CC   RKIFIKDGVEDADLPRTASDPDNAELVSGS
CC   IAPEY3_I_ORF: 5909-6668 (253 aa) env
CC   MVHFYHLTFQTSQNVPHQPRIAPHCSLEDEGLILPWSDCQSSITRWADQSKTFSFSPNMMVDPEKEFVMK
CC   KGLFIQDIRMHPFHKWLLCGVNGSCTELNPLIFIQGGAVGKASFTGISRFAQYWGIHAASLDYLWIYYII
CC   PSVEITGFNKTLINQTNYLPTPVCVYPPFLFILSNDSFEDCLNDSCWISQCWDVTKDTRAMVARIPRWIP
CC   VPVETPSTLSLFRQKRDFWHYCCRDHSNFSQCSCCYSCRVRYG.
XX
SQ   Sequence 7680 BP; 2186 A; 1702 C; 1775 G; 2017 T; 0 other;
     agtggcgccg agaacccggg aaacatacca tcaccaggcg ctgataggag accctccctt        60
     ttcacggggc gggttcagaa ctacgggaca ctttacagct ctgcaaggta tgttcggtct       120
     tgaaatttct ccagagttag aggccctttt gtttgttttc acggggctta ttctttttct       180
     tttggttgcg ttctgcttcc accggtggaa ctgctgactg gttctcagtc gcggtcaggc       240
     atggttagat aaaagagcag tatgggaact tcccactctg tggtgaccgc cttacacggt       300
     cggtcctgaa gcagcgtggc ctgaaagtcg ccactaagac actagaaggc tttgtaaaag       360
     agatagatcg catagcaccg tggtatgcgt gctcagggtc cttaactatc ccctcttggg       420
     agaaactgaa gggagattta gttagggaac agcagaatgg caaacttaaa gcagggacca       480
     tgccgttgtg gaagctgata agatcgtgct taaaggacga ggaatgtcaa caagtggtta       540
     aggcagggca gagaatactg gaggaaattc aagacagtct atcagagaca gagcggggag       600
     agagattagg agctcaaaag aaaaaaaggt gcaccaaata agaaaacagg cctttccacg       660
     gaccttgagc ccgaggaaaa gagaatctag ggaaagaata ccctgggaga gtttagaaaa       720
     aaggatgaga aggaagagaa gaagaaagat caatctgggg aggtccctag gagaaggagc       780
     ctctatccgc cattagatga gtttaaggct ctagctctta gtagctcaga atcagatgag       840
     gaacttagcc cctctgagga aacagactta gaggaagaag cagctcgtta tgaggaagaa       900
     agataccatc cagatgaaag gcgagctaat cagtcacaga aaaagccaaa agcggctgga       960
     gacaaaagtc agctcaagcc agcttgctgc tcggcctccg ggccgtcggc ctctgggtcc      1020
     tagtgcacct ccgccttatg tgcagaggta tcattcagac tcattcattc caaaagagga      1080
     acagagaaaa atgcaacagg catttccagt ctttgaagga gccgatggag ggcgagttca      1140
     cgctccggtg gagtatatac agattaaaga gcttgctgag tcagtccgta actatggagt      1200
     cagcgccaat ttcactatag cacaagtcga aaggcttgct actttggcaa tgactcctgg      1260
     agattggatg actgttgtga aagctgcagt tcctaatatg ggaatgtatc tagagtggaa      1320
     agcattgtgg caagattcct gccagacaca ggcaagggcc aatgccaccg ttgaagggga      1380
     ccaaagaaca tggacttttg aattacttac aggtcaggga caacacgctg ctaaccagac      1440
     aaattatcat tggggagcgt acgctcagat ctcagctgcc gctgttaagg cgtggaaagc      1500
     actctctagg aagggagagg caagtggaca tttgacaaaa attatccagg gcgcacagga      1560
     gtcattctca gactttgtgg ctagaatgac agaggcagca gggagaatat ttggagaccc      1620
     agaggcagct atgcctttaa ttgaacagtt ggtttatgaa caagctacgc aggaatgcag      1680
     agcagcaatt acacctagaa agagtaaagg attgcaggac tggttaaagg tttgccgtga      1740
     gcttggaggg ccgctcacta atgctggatt ggcagccgcc attctgcagg ggcagaggcg      1800
     ctcagacaca gctgagctca aactttgcta taattgtggc aaaccagggc acttttaaaa      1860
     aaggactgca gagcccttgt aaaaaggaca gcgccagggt tgtgtactaa gtgtggaaaa      1920
     ggatatcatt gggccaaaga ttgtcgctca attaaagata tacgaggcag gctcttgcag      1980
     ccaggacccc ctcaagcagt agaaaatgag aatgaaggca tttcaaaaaa cgagtttcgg      2040
     gcccccaggt cccagggccc caaaacatat gggaccccga cgggcaacag gtggacacca      2100
     cagtccgcag ggcaacagaa ggctcagctg gattggacct ccgtgcctcc acccgattca      2160
     tgctgatgcc ccagatgggg gtgcagccaa ttcctactga ctataagggg cctctgccat      2220
     ctggaagtgt cggcctaata ctgggccggg cctccctcac cttacaaggc cttattgtcc      2280
     accctggagt tgtagatcag gattatgaag gggaacttca ggttctctgt tcctgccctc      2340
     aaggtgtctt ttctatatca caaggggata gaatagctca actaataatt ttgccaagcc      2400
     tacatggcct gttttccctc ctctggtgtc cctcgagctg ccagagggat tggttctact      2460
     ggaaatgatt ctgcttactt aataatgtct ttagattcca ggccatcctt agagttagtt      2520
     atagaaggga aacaatttaa agggattttt agatacagga gcagataaaa gtattatctc      2580
     ttcccactgg tggccaaaag cctggcccgt cactcagtca tcacactctt tacaagggtt      2640
     aggctatcag tcctgcccca ctattagctc ccgttctttg agctggcaag cacctgaagg      2700
     tcaaacggga caattcactc cttatgtctt accactccca gttaatctct ggggggagag      2760
     atattttaca ggcaatggga atgaccttga ctaatgaata ctcaccacaa gctgttcaaa      2820
     tgatgaagaa aatgggctat acagaaggaa aaggattagg gaaaggagag cagggtagac      2880
     ttgaacctat cccctcaaga aggtaataat gggagacaag gtttgggttt ttttctagaa      2940
     gcggctgttg agggttccat gcccatacca tggcttacag aggaagctgt atgggttcct      3000
     caatggcctc tttcctctga aaaattagaa gcagccacaa aactgatctc tgaacagcta      3060
     cgcttaggtc atttagagcc ctctacctca ccctggaata cacctatttt tgtaattaag      3120
     aaaaaatctg gcaaatggcg cttattacat gatcttagag caattaatgc acaaatgcgc      3180
     ctgtttgggt cagttcagcg agggctacca ttgctttctg ccctacccaa aaattgggga      3240
     aattataatt atagatatta aagattgttt tttctctata cctttatgcc ctcaagatag      3300
     gcaaagattt gcatttacca tcccagccat taatcattta gagcctgatc aaagatacca      3360
     atggaaggtc ctacctcagg ggatggcaaa tagccccacc atgtgtcaac tgtatgtgca      3420
     attggcactt aagtcagtta gaaatcattt tccatcatta cttctggtac tttatatgga      3480
     tgacattctg atttgccata aaaattcaca gttattgcaa gatgcatacc ctatattaat      3540
     aaaaacatta gggcaatggg gattgcaggt agccaccgaa aaggtgcaag ttgctcaaat      3600
     gggaaccttc ctagggtcac tcatttatcc tgacaaaatt gttcctcaaa aattagagat      3660
     tcgcaaagat caactacata ccttaaatga ttttcaaaaa ttgctgggag atattaattg      3720
     gctgagacca tttttgaaaa ttccatcagc agagttaaag cctttatttg atatattaga      3780
     aggagatact cacatctcct cccatagagc acttacccca gctgcatgtc aagctttaca      3840
     aactatagaa aaggccttac aagatgctca attacaacgc attgatgagt cgaagtcatt      3900
     tgaattgtgc gtattaaaaa ccgcacagtt gccaacagca gtcttgtggc aaaatggacc      3960
     cttattgtgg gtccacccta atgcttcccc tgcaaaaatc attgaatggt atcctaatgc      4020
     agttgctcaa cttgcactta ggggaataaa agcagccatt actcattttg gaaaagaacc      4080
     tcatatacta attgtgcctt atacctctgc tcaagttcaa accctggcag caacaactga      4140
     tgattgggca gtcttagtta cctcctattc aggacaaatt gataatcatt atcctaaaca      4200
     tccaatttta cagtttgcct taactcaagc catagtgttt ccagtaatta cagccaaaca      4260
     cccacttgca gatggggtgg tagtatatac agatggatcc aaatctggca taggtgcata      4320
     tgtagtaaat gaccaagtaa catccaagca atataatgag acatcacccc aggttataga      4380
     gtgtttagtg gtactagagg tccttaaaac tttcccagga ccgcttaata ttgtatctga      4440
     ttccttatat gtagttaatg cagttaatac acttgaagtt gctggcttaa ataaaccatc      4500
     tagcaagctt gctcacattt ttcaacaaat tcagtcagcc ttgttacata gaagacatct      4560
     tgtctatatt actcatgtca gggctcattc tggccttcct ggccctatgt ctcatggaaa      4620
     tgacttagca gacaaagcca ctagaatcgt ggctgctgct ctgtcctcgc aggcagaagc      4680
     tgcaagggaa tttcataaac gctttcacgt gacggctgaa actttacgcc gccggtttta      4740
     ctttaaccag aaaagaagct cggacattgt cacccaatgt caaaactgtt gtcaattttt      4800
     acctactcct catgtagggg taaacccccg aggcgtcagg ccattacagg tctggcaaat      4860
     ggatgtcact catatttcct cctttgggag aaatcaatat ttacatgttt ctattgacac      4920
     ctgctctggt gtaatgtttg ccacaccttt aacaggtgaa aaagcctctc atgttataca      4980
     gcactgttta gaagcctgga gtgcttgggg caagcccaca atccttaaaa cggataatgg      5040
     gccagcatat acttctgcta aatttcaaca attttgtcat caaatggatg tcactcacct      5100
     gactggcctt ccttataatc ctcaaggaca aggcattgtg gaacgtgccc accgcacact      5160
     caagtcttat tttataaaac aaaaaggggg agttgatgag actctgccct cagtgccaag      5220
     agtagctgtc tccatggcac tcttcacact taattttttg aatcttgacg agcaaggacg      5280
     ttctgcagct gatcgacata gctcagaccc tgatagacca aaagaaatgg tcaaatggaa      5340
     ggatgtttta actggtctgt ggaaaggccc ggatcctatt ttaataagat ccaggggagc      5400
     tgtctgtgtt tttccacaga gtgaagacaa cccattttgg ctgccggaac gactcacccg      5460
     caagatattc atcaaggatg gtgtggaaga tgctgacctc ccgaggactg cttctgatcc      5520
     tgacaatgct gaacttgtct caggttccta gtataatggg cgaacagaga tgggccattc      5580
     tctcggcttt ccctaaacca atgccagttc gccatgatgc tatagttttt ccaaaattct      5640
     ttactactaa taaaacagtg gatttgccat atctacccta tgatcccacc cgagcaccat      5700
     taggagaaaa tcgctcttta ctagaacagg gttctttatg ttttcaaatt aatggaccag      5760
     ggaaaatgta tcaacctcac agcccgagcc ttgggaatgt ttaataagca ccgaggaggc      5820
     ttggtgagca caacccaaga tacttccaac gcagatataa ccattattca aatcacatgg      5880
     accttctggc aggaggcaat ttgggttaat ggtacatttc taccacctaa cttttcaaac      5940
     aagtcagaac gttccccacc aaccaagaat agccccccat tgtagtttgg aagatgaagg      6000
     gctgatcctg ccatggtctg attgtcaatc ctccatcact cgttgggcag atcagagtaa      6060
     aaccttttcc ttttctccca acatgatggt tgacccagag aaggaatttg ttatgaaaaa      6120
     gggacttttc atacaggaca ttagaatgca tccctttcac aagtggctgc tttgtggagt      6180
     caatggcagt tgtacagaac tcaatccctt gatttttatc cagggaggag cagttggaaa      6240
     ggcttctttt actggcatct caagatttgc tcagtattgg ggaatacatg ctgcctccct      6300
     ggactactta tggatatact atataatacc cagtgtagag atcactgggt tcaataaaac      6360
     tttgataaac cagactaatt atctacctac cccagtctgt gtttaccccc ctttcttgtt      6420
     tattctttca aatgattcat ttgaagactg tttaaatgat tcttgttgga tttctcaatg      6480
     ttgggatgta acaaaggaca cccgcgccat ggtggcccgg atcccacgtt ggatccctgt      6540
     tccggtggaa acaccctcca ccttatccct gtttagacaa aaaagagatt tttggcatta      6600
     ctgctgccgt gatcatagca atttcagcca gtgcagctgc tgctacagct gcagggtacg      6660
     ctatggctag tacggtccaa gcaggcacaa aattaaatca gctttcagtc gatctgactg      6720
     atgccatcaa tgtccaaact tctgctagtg cccagttgaa gggagggctg atgattttga      6780
     atcagcgcct tgatctggtt gaggaacaga ataagtgttc tataccagtt ggcccagttg      6840
     ggttgtgaaa gaaaattggg tgctctgtgt attaccagtg tccaatatga aaattttact      6900
     cgtgcagcta atctgtctag acagctttcc ttgtatcttg caggaaattg gtccgaagga      6960
     ttcgatgaga ctcttgaggc cctgagggcg gcagttttaa ggatcaactc gacgcgagtg      7020
     gacctgtcat tgacagaggg cctctcctcc tggatttcat ctgcattttc ttattttaag      7080
     gaatggggtg gggggtagtt ttaatttggt gctgccatct gctgtggact tgtgttcatg      7140
     ctctggttgg tttgcaagct cagagcccaa caaaaacgtg acaaggtcgt tattgctcaa      7200
     gcacttgcag ccattgaaca aggggcctcc cctgaaattt ggctatccat gcttaagaat      7260
     taaatggcat ttgagttctc tgctattgca tcccacggat ttgtggatcc attgcacctg      7320
     ggatgagaga tactcaacgc tcattgatca gcacttgcac ttcgctgagg tttcctcttg      7380
     cacgcgatag ggtgatcatg atttccccac taattcattt tttggctggc ctcttttata      7440
     gagttcgccc taggtcattt agcagttact gtcacacagt actgtggtat ccagagacgg      7500
     gcaactttcc tcatgtacag accaacctaa gacacggggc ccggtggcga tagggttacc      7560
     ctatgacagg aaaggctgtg acattggagg aatgacctaa gacaggagcc acagcagatg      7620
     gacataactg cagaggccta gaccagcctc aaattttaat aaaaactaaa aagggggaga      7680
//
ID   L1MA10      repbase; DNA   ; ROD   ; 1067 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 5, Created)
DT   20-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA10) - a consensus sequence.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MA10 subfamily; L1MA10.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1067
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MB3
CC   ORF2 ends at bp 675.
XX
SQ   Sequence 1067 BP; 402 A; 158 C; 192 G; 272 T; 43 other;
     ttaatatcca aaatatataa agaactcyta caactcaaca aaaaaaaaac aaacaaccca        60
     attaaaaaat gggcaaarga cttgaataga catttctcca aagaagayat ayaaatggcc       120
     aataagyaca tgaaaaratg ctcaacatca ytaatcatta gggaaatgca aatcaaaacc       180
     acaatgagat aycacctyac acccattagg atggctatta tyaaaaaamc agaaaataac       240
     aagtgttgry gaggatgtgg agaaattgga acccttrtrc attgctggtg ggaatgtaaa       300
     atggtrcarc cactrtggaa aacagtatgg hrgttcctca aaaaattaaa aatagaatta       360
     ccatatgacc cagcaatycc actyctrggt atatacccaa aagaattgaa atcatgttcy       420
     yahaaagata yttgtacacc matgttcata gcagcattat tcayaatagc caaaaggtgg       480
     aaacaaccca aatgtccatc aatgrwtgaa tggataaaca aaatgtggta tatacataca       540
     atggaatatt attcagcctt aaaaaggaag gaaatyctga cayatgctac aacatggatg       600
     aaccttgarg acattatgct aagtgaaata agccagtcac aaaaggacaa atactgcatg       660
     attccactta tatgaggtat ctaaaatagt caaactcata gaarcagaga gtagaatggt       720
     ggttgccagg ggctgggggr agggggaaat ggggagttgc tgttcaatgg gtataaagtt       780
     tcagttatgc aagatgaata agttctagag atctgctgta caacattgtg cctatagtta       840
     ataatactgt attgtacact taaaawttgt taaaagrgta gatctcatgt taagtgttct       900
     tatcgcacaa caaaaaaatg gggaactttt ggrrgtgatg gatatgttca ttatcttgat       960
     tgtggtgatg gtwtcacggg tgtntacata tgtcaaaact catcaaattg tacacwttaa      1020
     atatatgcag tttttagtgt ataattatac ctcaacaaag ctgtttt                    1067
//
ID   MLT1C       repbase; DNA   ; ROD   ; 466 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1c
DE   subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1c subfamily; STIR; MLT1C.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-466
RA   Rouyer F., de la Chapelle A., Andersson M., Weissenbach J.;
RT   "An interspersed repeated sequence specific for human
RT   subtelomeric regions.";
RL   The EMBO Journal 9(2), 505-514 (1990).
XX
RN   [2]
RP   1-466
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
SQ   Sequence 466 BP; 135 A; 99 C; 115 G; 104 T; 13 other;
     tgttatgggt tgaattgtgt ccccccaaaa ttgatatgtt gaagtcctaa cccctagtac        60
     ctcagaatgt gaccttattt ggaaataggg tcwttgcaga tgtaattagt taagatgagg       120
     tcatactgga gtagggtggg ccctaaatcc aatatgactg gtgtccttat aaraagagga       180
     aatttggaca cagacacgca cacggggaga aggccatgtg aagacggagg cagagattgg       240
     agtgatgcak ctacaagcca aggaacgcca argrytgcca gcaaaccacc agaagctagg       300
     aagaggcaag gaacagattc tccctcacag ccytcagagg arrccagccc tgccgacacc       360
     ttsatctcgg acttctggcc tccagaactg tgagagaata matttctgtt gtttaagcca       420
     cscagtttgt ggtactttgt tacggcagcc cyaggaaact aataca                      466
//
ID   MER80       repbase; DNA   ; ROD   ; 508 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 4)
XX
DE   MER80 repetitive element - a consensus.
XX
KW   MER80; DNA transposon fossil; MER1_type family.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-508
RA   Smit F.A.;
RT   "MER80.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   MER80 has 16 bp terminal inverted repeats similar to those of the
CC   MER1 family. 8 bp are duplicated with a bias for NTCTAGAN.
CC   Average divergence from consensus 23.5%.
XX
SQ   Sequence 508 BP; 171 A; 84 C; 90 G; 162 T; 1 other;
     caggggttct taaccttttt tgtgccatgg gcccctttgg cagtctggtg aagcctatgg        60
     accccttctc agaataatgt ttttaaatgc ataaaataaa atacatagga ttacaaagga       120
     aaccaattat attgaaatac agttatcaaa atattaaaaa accaaatttg tgatatagta       180
     atatatgtgc ttctttatta atgcattaaa taacaagatc tagcggcggg tctaataact       240
     accgtaattt cgaagtagtg atgagcataa atgatatttt gagatatctg caacaactgt       300
     aatgtgatat gaaaatatct gtgatttcta ttggtgacaa agtcacaggt actgctaata       360
     ctactgtggt ttgttgccta cattcataat tgaaggaaat gctaaatttc agttagaggt       420
     tagtgaaaat aaagatgtaa nttttttccc catccaagtt cacggacccc ctgaattcta       480
     tccatagact ccaggttaag aacccctg                                          508
//
ID   L1MC5       repbase; DNA   ; ROD   ; 1351 BP.
XX
AC   .
XX
DT   14-MAY-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MC5) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC5 subfamily; L1MC5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1351
RA   Jurka J.;
RT   "L1MC5.";
RL   Direct Submission to Repbase Update (05-MAY-1998).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1351 BP; 513 A; 205 C; 231 G; 383 T; 19 other;
     aaaaaaaaaa yacatttcta scctttccac tgaaaagncc tagaaacaat gactaatcca        60
     atagcaatga gtaccctyag gacccagatt gtggtctcta aataccattt cccactaaaa       120
     ggaaccaggg ctccttggag aaatggctaa ttccaggtct ggggcaggaa atgtacaaga       180
     tgagcctgga acatcttgtc ataccagata gcaaggaagc tataaaacta ctagggttgt       240
     gtcaaaagga ctcaggagcc aacttactgg ccaaagatgg gacaatttga gcatcaataa       300
     taactgcaat ttaacacatc aaatatrttt aaatccatga gtttataata aaaaaatcta       360
     attggtcacc tttggagtga tgctagggaa ccaactcatt attttgaaaa ctggtaaata       420
     aagggaaaga atcaagcatt tatcttgcct ttcctatata aactgtacct cwgggtaacc       480
     aaatagtwga tgagggaaat ttctctttat agaagtattc cagctaataa atgaagaaaa       540
     aattagaatt agaatatcac cattttgcaa cccctaatga attaatggat ctaggcaatg       600
     atcatcaatg gctgctaaca tcacaaaaac tarasatytg cctcctgatg gaartawaca       660
     acaccaccta tgaaatatta gtcttgccaa aaaaaaatca aacctgaatc tgatcaagcc       720
     tctagatcta actaccaatt tacaggaaat acagaggaca gaggaacatg ttaaatgaca       780
     ccatrgggat gcaatcagca aaatccagac tgtgggaaac tctacaggac aaatrttaac       840
     ttttcttcaa caaataaatt atgagaaaaa aaagatggaa gaagaaccta tagattaaaa       900
     gagacttaaa agacatatca accaattaca atgtatggac cttatttgga tcctgattca       960
     aamaaatrta aactataaaa atatatrtgt atacaattgg aaatttgaac actgactaga      1020
     tatttgatga tattaaggaa ttattgttat ttttaggtgt gataatggta ttatagttat      1080
     tttataaaat agtccttatc ttttagagat acatactgaa atatttatag ataaaatkat      1140
     atgatgtctg ggatttgctt caaaataatc caggagggag gaagtaggtg gagctataga      1200
     tgaaacaaaa ttggccatga attgataatt gttgaagctg ggtgatgggt atgtggaagt      1260
     tcattatact attctctcta cttttgtata tttgaaattt ttctaatwtt aaaaataaag      1320
     accaatttgt tggacattaa tttgttggca a                                     1351
//
ID   LX4         repbase; DNA   ; ROD   ; 176 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 3, Created)
DT   22-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Myomorpha L1 3' end - a consensus.
XX
KW   LINE; L1 family; 3'-end; RMER7; LX4.
XX
OS   Murinae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae.
XX
RN   [1]
RP   1-176
RA   Chopra V., Jurka J.;
RT   "LX4.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 176 BP; 31 A; 36 C; 78 G; 31 T; 0 other;
     gatcccgttc ccctaactgg gctgccttgt ctggcctcag tgggagagga tgtgcctagt        60
     cctgcagaga cttgatgtgc cagggtgggg ggatacccag ggggggctcc ccctctcaga       120
     ggagaagggg aagggggaat ggggggaggg acttgtgagg gggggactgg gaggag           176
//
ID   MIR2        repbase; DNA   ; ROD   ; 150 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 5, Created)
DT   19-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   Repetitive element - a consensus.
XX
KW   Repetitive sequence; MIR2; DBR; SR1.
XX
OS   Mammalia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi.
XX
RN   [1]
RP   1-150
RA   Degen J.S., Davie W.E.;
RT   "Nucleotide sequence of the gene for human prothrombin.";
RL   Biochemistry 26, 6165-6177 (1987).
XX
RN   [2]
RP   1-150
RA   Smit F.A., Riggs D.A.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation.";
RL   Nucl. Acids. Res 23, 98-102 (1995).
XX
CC   [2] (Consensus)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
XX
SQ   Sequence 150 BP; 35 A; 30 C; 33 G; 49 T; 3 other;
     ttntttattg tctgtctcct ccactagant gtaagctcca tgagggcagg gattttgtct        60
     gtyttgttca ctgctgtatc cccagcgcct agaacagtgc ctggcacata gtaggcgctc       120
     aataaatatt tgttgaatga atgaatgaat                                        150
//
ID   L1MA10      repbase; DNA   ; ROD   ; 1069 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MA10) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MA10 subfamily; L1MA10.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1069
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MB3
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   17%.
XX
SQ   Sequence 1069 BP; 409 A; 155 C; 205 G; 272 T; 28 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     attccactta tatgaggtat ctaaaatagt caaactcata gaagcagaga gtagaatggt       720
     ggttgccagg ggctgggggr agggggaaat ggggagttgc tgttcaatgg gtataaagtt       780
     tcagttatgc aagatgaata agttctagag atctgctgta caacattgtg cctatagtta       840
     ataatactgg attgtacact taaaawttgt taaaagrgta gatctcatgt taagtgttct       900
     tatcgcacaa caaaaaaatg gggaactttt ggrrgtgatg gatatgttca ttatcttgat       960
     tgtggtgatg gtwtcacggg tgtntacata tgtcaaaact catcaaattg tacacwttaa      1020
     atatatgcag tttttagtgt ataattatac ctcaacaaag ctgttttaa                  1069
//
ID   MLT1F       repbase; DNA   ; ROD   ; 541 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1f
DE   subfamily) - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MLT1f subfamily; MLT1F.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-541
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 541 BP; 135 A; 137 C; 123 G; 126 T; 20 other;
     tgtggtagcc agcctccaag atggccccca atgatccctg ctcctggtat tcacaycctt        60
     gtatggtcyc ytcctacatt garyyagggc trgtctgtgt gaccaataga atagggcaga       120
     agtgatggcg tgtsacttcc aagaytargt cayaaawaac actgtggytt ctgcyttgnt       180
     ctcttcgggc tactcactct gggggaagcc agctgccatg ctatgaagac actcaagcag       240
     cctatggaga agtccacgtg gsaaggaact gaggtctcct gccaacagcc agcttcgacy       300
     tgccagccat gtgagtgagc catcttggaa gcggatcctc cagccccagt yaagccttca       360
     gatgactgca gccccggctg acatcttgac tgcaacctca tgagagaccc tgagccagaa       420
     ctacccagct aagctgctcc tarattcctg acccacagaa actgtgagat aataaatgtt       480
     trttgtttta agccactaag ttttggggta atttgttacg cagcaataga taactaatac       540
     a                                                                       541
//
ID   L1P2_5      repbase; DNA   ; ROD   ; 990 BP.
XX
AC   .
XX
DT   26-MAY-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   5' part of L1 subfamily - a consensus sequence.
XX
KW   LINE; MER60; L1 subfamily; L1P2_5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-990
RA   Kapitonov V.V., Jurka J.;
RT   "L1P2_5.";
RL   Direct Submission to Repbase Update (MAY-1998).
XX
CC   [1] (Consensus)
XX
CC   L1P2_5 is the 5' part of L1 subfamily.
CC   Individual copies are 82% identical to the consensus sequence.
CC   Portion 544-666 is 74% identical to the portion of MER60
CC   (219-337);
CC   Portion 685-986 is 80% identical to the portion of L1MB6_5
CC   (954-1241).
XX
SQ   Sequence 990 BP; 329 A; 224 C; 220 G; 216 T; 1 other;
     ataaaaaaat taatgagaag aggattctgg gaagatggca gagtaggaag caccaggaat        60
     ctgtctcccc acctagacaa caattgcact ggcagaatct gtctgatgta actattttgg       120
     aactctggag tctattgaag gcttgcaact tccaggggaa ggcttggatg gtaaattgtg       180
     gttaatttcg gtcaatttca gctcttagca cagtagcagc tacccatccc ccacccccag       240
     ccccgtggca ggcagctgtg cacgtgttcc tggagcagct tgcacacagc ttgcgggagc       300
     cagggtgggc aaaaaggatc ctgtcctcca aatatcgggg atctgtgctc tgatcgctga       360
     ttgctgcttc tgatcacaga ggtgcagaca aagaggtggc ggccattgtt gtcgcacctc       420
     ccyccattgt tgcaagcccc tccccctctg gctgaagtga cttccagggg atttaaaggg       480
     ctagtaccct ttctccgctt tatttttctt ttttcccctt ttgggagcca gacattaaag       540
     actaggacat tcaaaagcaa ctgcatatac ggggaaaatt agaaagtcac cgtgcatgcc       600
     cagggaaagg cacaggctca gaaaagacct gagaagacct taagtttaca cctcaggctg       660
     atccttggca cagagacagc ctacaacaat aaaaacaaaa caaaaaaata acaaaaacac       720
     agcaaaccct ggggaagagg gagaatctga tttccagagt taccacatta ttagattcaa       780
     atgtccagtt ttcaacaaca acaacaaaaa atcacaaggc atacaaagaa acaggaaagt       840
     atggcccatt caaaggaaaa aaaataaatc aacagaaact gtccctgaaa aagacctgat       900
     ggcagatcta ctagacaaag actttaaaac aactgtctta aagatgctca aagaactaaa       960
     ggaaaacgtg gagaaagtca agaaaatgat                                        990
//
ID   L1MEC_5     repbase; DNA   ; ROD   ; 2523 BP.
XX
AC   .
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   L1MEC_5 LINE1 repetitive element - a consensus.
XX
KW   L1M4_5; LINE1 repeat; L1MEC_5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2523
RA   Smit F.A.;
RT   "L1MEC_5.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   5' end of LINE elements with L1ME1-2 subfamily 3' ends,
CC   comprising the
CC   5' UTR, ORF1 (pos. 793-1771 or more) and part of ORF2 (from pos.
CC   2219).
XX
SQ   Sequence 2523 BP; 1044 A; 416 C; 499 G; 486 T; 78 other;
     aatgtnttaa aaaattcact kaaaacataa tasaagactt ctgcttccgg cyaagatgga        60
     gtaacaggga ccggatttac cctcctrcct gaaacaacya aaacgcggac aaaatatatg       120
     aaacaacggt tttcaagaca ttgracatca ggcagcgmag gacagcgatc cctgrgagaa       180
     gggaaacgaa tgaggtgagc cctrtgatcg ccycagctta ctgcctkgag atagtttcca       240
     ggccacggca cagagaggag aaacccaggc agagcccggc ggwctccctg agttgaggag       300
     acggagctga gagtycgrgg aggccaaggc tggctagagt tcgcagggca gaataccaga       360
     gaggagaaag ccgcamagag agaacttctg agatctgcag agggtccccy tcgagtcttc       420
     agctgagtac tgaycagcnc atgcatgcga ggaaacyacc cgaggctagg gaaagaaccm       480
     cacgaaagga ttararggaa caatccccag agctcacaca gggccgggaa tagttcctgt       540
     ttccaccagc cagagtggaa aacctcataa ttcacggggc atcgggtaga gtactcagaa       600
     gggttttgcc tcagtagcgg ggaaaaatta gccctaaact aaacactgct ctggtcccac       660
     ctaacaaatc ttaaaagcaa gcctcgaaaa gatcaaactg tttccaagta acttaactgc       720
     atcccagaat aaagctcaag aatatttawa ggaatacaaa aatatccagc acccaamaag       780
     gtaaaattca caatatctgg catccaatca aaaattacca ggcatccaaa gaagcaggaa       840
     aatacgacct ataatgagga gaaaaatcaa tcaatagaaa cagacccaga aatgacanag       900
     atgatagaat tagtagacaa ggacatttaa amagttatta taactctnny mwatatgttc       960
     aagragntaa agaaaaacat gaacataatg aagaaagagr tggaagatat aaaaagaccc      1020
     aaatagaact tctagagatg aaaawtayaa trtctgaaat gaaaaataca ctggatgaga      1080
     ttaacagcag attagacact ncagaagaaa raattagtga acttgaagac atancaatag      1140
     aaantatcca aaatgaaata cagagacaaa gaaannaaaa ayagacaaat aaaataaagc      1200
     gtcagtgagc tgtgggacaa cttcaagtgg cctaayacac gtrtwattgg agtcaaaaag      1260
     aaagganaga gagaatgagg yagaagaaat attggaagaa acgatagctg agaattttcc      1320
     aaaattgatg aaagacatna atctacakat tcaagaattc caatgaatsc caagyaggat      1380
     aratacagaa gaaacaacac atctwgacat atcatagtca aatcgyagaa aaccaaagay      1440
     aaagagaaaa tcttaaaagc agtcagagar aaacaacata ttacgtacag ggggacaaca      1500
     atacaaatta aagctgactt tttaccaggc acagtggagg ccagaagaca gtgggatgaw      1560
     atatttaaag tgctgaaaga aaagaactgt cgacccggaa ttctatatcc agcgaaaata      1620
     tctttcaaaa ataaaggcaa aataaagaca ttctcagaca aacaaaagct gagataattc      1680
     attaccagca gacctgcgct acaagaaatg ttaaaggaag tcnttcaagc agaaagaaaa      1740
     tgacaccaga tggaaacata gatctacaca aagaaatgaa gagcgccgga aatggtaamt      1800
     atacgggtaa atataaaaga natcctttct tattatttnn aatttcttta aaagataatt      1860
     ggctgtttan agmaaaaata ataacaatgt attgtggggt ttataacata tgtaarcaaa      1920
     atgtatggca acaatagcac aaaggccggn aggggagaaa tggaagtata ytgttgtaag      1980
     gttcttatac tntacgtgaa gtggtataat rtcatttgaa ggtagactgt gataagttaa      2040
     agatgcatat tgtaaaccct agagcaacca ctaagataac aaaacaaaga gttatagcta      2100
     ataagccaac aaaggagata aaacggaatc ataaaaaata cccaattaat ccaaaaaaag      2160
     gcanwaaaaa aaaaatggaa caaagaamag atgggacaaa tagaaaacaa atagcaarat      2220
     gatagattta aacccaacca tatcaataat tacattaaat ataaatggtc taaacgctcc      2280
     aattaaaaga cagagattgt cagaatggat aaaaaaacga gacccaaata tatgctgcct      2340
     acaagaaacc cactttaaat ataaagacac aaataggtta aaagtgaaag gatgaaaaat      2400
     gatatntcat gttaacgcca tccaaaagaa agctggagta gctatattaa tatcagacga      2460
     agtggatttc agaggaaaga ataccgccaa gagncaaaaa aggtcatttt ataatgataa      2520
     agg                                                                    2523
//
ID   MT2C        repbase; DNA   ; ROD   ; 322 BP.
XX
AC   .
XX
DT   25-APR-1997 (Rel. 3, Created)
DT   25-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Long terminal repeat of retrovirus-like element; MTE3; MT2C.
XX
OS   Sciurognathi
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia.
XX
RN   [1]
RP   1-322
RA   Wilkie M.T., Palmiter D.R.;
RT   "Analysis of the integrant in MyK-103 transgenic mice in which
RT   males fail to transmit the integrant.";
RL   Mol. Cell. Biol 7(5), 1646-1655 (1987).
XX
RN   [2]
RP   1-322
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. dissertation, Univ Southern California, 1995, , pp
RL   220-224..
XX
CC   [2] (Consensus)
XX
SQ   Sequence 322 BP; 83 A; 62 C; 79 G; 96 T; 2 other;
     tgtagtggct attcctggtt gtcaacttga ctatatttgg aatgaactac aatccagaat        60
     tggaaggctc accagtgacc ctaatctgga ggctgggaga tacaagtttc tgacctggat       120
     cttggtatgg agatcttgag gcatagtggc tatggattcc agaagattaa ggcagggaga       180
     tctttgagtt caaggtcatc gcctgcttgc ttcgtgagac tgagtaactg ctagatcctt       240
     ggacttccat tcacagctrc nactgaacca ttgttgggaa ttggactgca gactgtaagt       300
     catcaataaa ttcctttact at                                                322
//
ID   LINE3_RN    repbase; DNA   ; ROD   ; 600 BP.
XX
AC   M13922;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   25-APR-1997 (Rel. 3, Last updated, Version 3)
XX
DE   Rat repetitive sequence homologous to 3' end of LINE repetitive
DE   element.
XX
KW   LINE repetitive sequence; long interspersed element; RNLINE3;
KW   LINE3_RN.
XX
OS   Rattus norvegicus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Rattus.
XX
RN   [1]
RP   1-600
RA   Shore K.S., Bacheler T.L., de Riel K.J., Barrows R.L.,
RA   Lynch J.M.;
RT   "Cloning and characterization of a rat-specific repetitive DNA
RT   sequence.";
RL   Gene 45, 87-93 (1986).
XX
DR   GenBank; M13922; Positions     297     896.
XX
SQ   Sequence 600 BP; 215 A; 123 C; 170 G; 92 T; 0 other;
     gggaatagag aggcaaagat taaaacagac acagaaggaa cacccattca gagcctgccc        60
     cacatgtggc ccatacacat acagtcatcc aattagacga gatggatgaa gcaaagaagg       120
     gcaggccgac aggagccgga tatagatcgc tcctgagaga cacagccaga atacagcaaa       180
     tacagaggcg aatgccagca gcaaaccact gaactgagaa taggatcccc gttgaaggaa       240
     tcagagaaag aactggaaga gcttgaaggg gctcgagacc ccatatgtac aacaatgcca       300
     agcaaccaga gcttccaggg actaagcaac tacctaaaga ctatacatgg actgaccatt       360
     gactctgacc ccataggtag caatgaatat cctaataaga tcaccagtag aaggggaagc       420
     cctgggtcct gctaagactg aacccccagt gaacaagatt gttgggggga gagcggcaat       480
     ggggggagga tggggagggg aggggaaggg ggagggatta gggggatgtt tgcccggaaa       540
     ccgggaaagg gaataacact cgaaatgtat ataagaaata ctcaagttaa ttaaaaataa       600
//
ID   L1MB3       repbase; DNA   ; ROD   ; 927 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 5, Created)
DT   20-FEB-1997 (Rel. 5, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MB3) - a consensus sequence.
XX
KW   Repetitive sequence; L1 (LINE) family; MER12; L1MB3 subfamily;
KW   L1MB3.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-927
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-927
RA   Smit F.A., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [2] (Consensus)
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MA10
CC   ORF2 ends at bp 675.
XX
SQ   Sequence 927 BP; 362 A; 135 C; 176 G; 219 T; 35 other;
     ttaatatcca aaatatataa agaactcyta caactcaaca aaaaaaaaac aaacaaccca        60
     attaaaaaat gggcaaarga cttgaataga catttctcca aagaagayat ayaaatggcc       120
     aataagyaca tgaaaaratg ctcaacatca ytaatcatta gggaaatgca aatcaaaacc       180
     acaatgagat aycacctyac acccattagg atggctatta tyaaaaaamc agaaaataac       240
     aagtgttgry gaggatgtgg agaaattgga acccttrtrc attgctggtg ggaatgtaaa       300
     atggtrcarc cactrtggaa aacagtatgg hrgttcctca aaaaattaaa aatagaatta       360
     ccatatgacc cagcaatycc actyctrggt atatacccaa aagaattgaa atcatgttcy       420
     yahaaagata yttgtacacc matgttcata gcagcattat tcayaatagc caaaaggtgg       480
     aaacaaccca aatgtccatc aatgrwtgaa tggataaaca aaatgtggta tatacataca       540
     atggaatatt attcagcctt aaaaaggaag gaaatyctga cayatgctac aacatggatg       600
     aaccttgarg acattatgct aagtgaaata agccagtcac aaaaggacaa atactgtatg       660
     attccactta tatgaggtac ctagagtagt caaattcata gagacagaaa gtagaatggt       720
     ggttgccagg ggctgggggg aggggggaat ggggagttak tgtttaatgg gtacagagtt       780
     tcagtttggg aagatgaaaa agttctggag atggatggtg gtgatggttg cacaacaatg       840
     tgaatgtact taacgccact gaactgtaca cttaaaaatg gttaaaatgg taaattttat       900
     gttatgtata ttttaccaca attaaaa                                           927
//
ID   MYS1_PL     repbase; DNA   ; ROD   ; 2501 BP.
XX
AC   X02855;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Mouse mys-1 transposon.
XX
KW   Repetitive sequence; Long terminal repeat; transposon;
KW   Tandem repeat; direct repeat; mys repetitive sequence; PLMYS1;
KW   MYS1_PL.
XX
OS   Peromyscus leucopus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae;
OC   Sigmodontinae; Peromyscus.
XX
RN   [1]
RP   1-2501
RA   Wichman A.H., Potter S.S., Pine S.D.;
RT   "Mys, a family of mammalian transposable elements isolated by
RT   phylogenetic screening.";
RL   Nature 317, 77-81 (1985).
XX
DR   GenBank; X02855; Positions      21    2521.
XX
SQ   Sequence 2501 BP; 710 A; 532 C; 462 G; 797 T; 0 other;
     tgttgctgga gggcttctct ccaggttccc caagccccgc agtcccacaa tccatttata        60
     aaataatcac tcagacgctt atatcactta taaactgtat ggccgtggca ggcttcttgc       120
     taactgttct tttatcttaa attaacccat ttttataaat ctatagcttg ccacgtggct       180
     ggtggcttac cggcgtctct acatgctctt ctcctggcgg tggctgcagt ctctcttcct       240
     cagcctcccg cttcccagaa ttctcctctc tccttgtccc acctacctcc tgcctggtca       300
     ttggccatca gtgttttatt tacatagagt gatatccaca gcacttcccc tttcttcttt       360
     ttttaaaaag gaaggtttta actttaacat ggtaaaatta catataacaa aacaattacc       420
     gagcaagaat tatagttaca atattaaaga agatgtccta tctatcttat atttgtgagt       480
     ttaaggtttt atagctaact tatcttttat cataactgag gaaattacga ctatctagcc       540
     ttcaaccaca tcaaagacct gagaaggaac ataatggtac ctgagaaatg gtagacggat       600
     gcaagcaact tcgggaatct tgcaagagta gaccaagaca gctggcagcc tggacagtca       660
     cctgatgttt ctcagcattg ttggtgcatt caaattggct acaggcctag agtatctgac       720
     agaccatttt cagaagcagg aattctgaga gaccatctta ccctgtcttg gcagagtaca       780
     gtggtcgctt tccttgtgtc ccgcttgtcc agaaaggaca gcattgcatt tgtactgtca       840
     gccgtcaagg caagggcagt tctttgccca gtaggccatt ttgtgccaaa aagacaaact       900
     tccaaatgga aatgtcttag aagcccaaca ttctctcggg atcaattggt gcagccagga       960
     gcaattgtgt ctcacatcaa cagaattcta agttatttaa atgccatatt ttctaggtct      1020
     atgaagtgtt tgaagattac ctatctatct gaaatatatc tatgtatacc tagaagactt      1080
     aactaacatg gctacagata tgattatcat agatgactaa ttattaacct attttttaat      1140
     tatccattac aattttaaat gagttatata aacataatac ctcaaacaag aatagaaata      1200
     tatatataca gtataacaaa attaacttca agtttgtatc aatgaactaa aatttatacc      1260
     aatgtaaaac attttaaaca taaactaaaa tctataccaa tgtaaaacat tttaaacaag      1320
     ttgttcttta aaagtaggtt cattaatcta cccttttatc ttatcatctc catatcctcc      1380
     tatatatcat atcccctttt cttttttaga aagagatcac atttataatc aacctgtttt      1440
     aaataaaaat attggttttt ctctgtccca caccagaggg ctcttctgat ttgggacaca      1500
     agaatctctt aaccattttt ttttttttta aagcaatatg tctgggttta gagggggagt      1560
     gagccaattc cacctctaaa gccagcttgg tatatttggg aatttgggcg tagcatctct      1620
     tactgcttcc tgctggaggg gggcgctgta tcttatgggg acgcaaagaa aattttagac      1680
     ctatggggta gccgtgaggc tgtattgtgt gaaccagttg ccttgaaacc gatctggatg      1740
     ttggatcatc tgggccatgg tgtcatcgga gtcctttcag ggggtcttgg ctggtgaaac      1800
     ctgatgtatc ttaatctgga acaagtccac agcctctggc tttctgtgga aacaaaagca      1860
     gaacctcttt tccaaagtaa catatcctta tatccaaatt ttgaagtcaa ggtaccttta      1920
     aaatatacat tttggcataa ctcaacagct tttgtaatca aatgtttttc tttagttatg      1980
     aatatcaaag agaacataat ccagattctc tgtgtggtag ccatctttat gtggcttatg      2040
     ttttatatta ccttgagcct tgagcctatt gctttaaact gtaccattgt aagcgtgaaa      2100
     cggcgctgtg gctgctggct ccgcccactt cagcttccca acatggcagt ggtacatttt      2160
     ccgccagctc tgggagtcat caagtctcag aaatagtggg tctaagcttt tatcaaagca      2220
     gcgtgtagcc cagaaacctc tttttttttt ttttaaaaaa aaaataatag taaagactaa      2280
     atctaccaca cagcttaatt tgccgctggc agatgcctca tttccgccat actgccggtc      2340
     agacgcaccc gccaggaacc cgccagtgtc caaacttgcg ttttgccgca tctagctgcc      2400
     gtataagaca agaagcagga acctggtttt ggctctgttt agaattggtt attaaatatt      2460
     ctcaggttta aggtggaaac tcgagccgtt gggcgccatt t                          2501
//
ID   GOLEM       repbase; DNA   ; ROD   ; 3029 BP.
XX
AC   .
XX
DT   13-JAN-1998 (Rel. 6.4, Created)
DT   28-JUN-2000 (Rel. 7.2, Last updated, Version 5)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   DNA transposon; MER7; 35S; MER17; MER29; MER7B; GOLEM; TIGGER3.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2724
RA   Drinkwater D.R., Burgoyne A.L., Skinner D.J.;
RT   "Two human repetitive DNA elements: A new interspersed repeat
RT   found in the factor IX gene, and a satellite 11 tandem repeat
RT   sequence.";
RL   Nucleic Acids Res 14, 9541-9541 (1986).
XX
RN   [2]
RP   1-2724
RA   Kaplan J.D., Duncan H.C.;
RT   "Novel short interspersed repeat in human DNA.";
RL   Nucleic Acids Res 18, 192-192 (1990).
XX
RN   [3]
RP   2713-2608
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome.";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [4]
RP   2327-2128
RA   Skalnik G.D., Strauss C.E., Orkin H.S.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem 266, 16736-16744 (1991).
XX
RN   [5]
RP   2787-2607
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328 (1993).
XX
RN   [6]
RP   2327-2128
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [7]
RP   1-2128
RA   Smit F.A., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [8]
RP   1-3029
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?.";
RL   Direct Submission to Repbase Update.
XX
RN   [9]
RP   1-3029
RA   Smit F.A.;
RT   "GOLEM.";
RL   Direct Submission to Repbase Update (JAN-1998).
XX
CC   23 bp terminal inverted repeats and TA target site [7].
CC   GOLEM's non-autonomous elements are GOLEM_A (MER7A) and GOLEM_B
CC   (MER7B) repeats.
CC   Orientation of the repeat has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [8].
CC   The ORF from pos 442-2307 encodes a protein 39% identical (57%
CC   similar) over the full-length to the Tigger1 product.
XX
SQ   Sequence 3029 BP; 968 A; 580 C; 659 G; 820 T; 2 other;
     cagtcatgcg ccgcataacg acgtttcggt caacgacgga ccgcatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgtcgt agctgtcgta       120
     acgtcatagc gcaacgcatt actcacgtgt ttgtggtgat gctggtgtaa acaaacctac       180
     tgcgctgcca gtcgtataaa agtatagcac atacaattat gtacagtaca taatacttga       240
     taatgataat aaatgactat gttactggtt tatgtattta ctatactata ctttttatcg       300
     ttattttaga gtgtactcct tctacttatt aaaaaaaagt ttactgtaaa acagtatgcc       360
     gtgttacacc ggcagcagcc tcatacatct cgtgtttacc gcgtctcttg attgcatcat       420
     tttctcttgt gcttgattta atctcgtgtt gttttgttca tcatggcccc taagcgtaca       480
     aaatccacgg ctaatgttgc cagtaagagg ccacatcgag tgactgacct ggaaacgaaa       540
     ttaaaagtga ttaaggacta cgaaggtgga aaatcagtga tggttattgc tcgccagtca       600
     ggcatgtccc attccaccat agctacgatc ttgaagaaca agaacaaagt gacagaagct       660
     gttaaaggat ctgcttcatt gaaggcaacg agactaacaa aaattcgaga agggcctata       720
     tcagatatgg agaaacttct aatgacctgg attgaagacc agacacagaa gcatatccct       780
     ctcagcacca tgacgatcac ggccaaagca aaaagtttgt ttgcgatgtt gaaagaaaag       840
     gctggacccg actacgatgt tgaatttact gctagctctg ggtggtttaa acgattcaag       900
     aatcgttatt cattacataa tgtgaaagtg agtggtgagt ctgcgagtgc tgatgtgaag       960
     gcagctgaag aatttttgga aactctagat aagctgattg tggaggaaaa ttacttgcca      1020
     gagcaaatct tcaatatgga tgaaacctcc ctattctgga aacggatgcc tgaaaggact      1080
     ttcatccata aggaggccaa gtcaatgcca ggtttcaagg cttttaagga caggataaca      1140
     gtcttgcttg ggggcaatgt tgcaggctac aaattgaaac cctttgtgat ctggcacagt      1200
     gagaacccca gggccttcaa gcatatcaat aagcacacac tgccagtgta ctacaggagc      1260
     aataagaagt catggatgac ccagctcctc ttccaagatg ccctcctgaa ttgctatgcc      1320
     agcgaaatgg agaagtactg tttggagaat aacatacctt tcaagatttt gcttattgtt      1380
     gataatgctc ccgcacatcc tccttttatt ggtgatcttc atcccaatat caaagtggtg      1440
     tttctccctc caaacaccac ctctttgatc caaccaatgg atcaaggagt tatagcagct      1500
     tttaaggcct actacctgag gaggaccttt gcccaggcta ttgctgcaac tgaggaagac      1560
     actgagaaga cactgatgca attctggaag gattacaaca tctatgactg catcaagaac      1620
     cttgcttggg cttggggtga tgtcaccaag gagtgtatga atggcatctg gaagaagaca      1680
     ctcaagaggt tcgtccgtga cttcaaagga tttgccaagg atgaggaggt tgcaaaaatc      1740
     aacaaggctg tggttgagat ggcaaacaac tttaacctgg gtgtggatga ggatgacatt      1800
     gaggagctcc tagaggtggt tcctgaggaa ttgactaatg aggagttgtt ggaactggaa      1860
     caggaacgca tagctgaaga agaggcaaga gaaaaggaaa ctgcaggaga agaaaaagaa      1920
     gaacccccaa gaaaattcac agtgaagggt ttagcagaag cttttgcaga cctcaacaag      1980
     ctccttaaaa agtttgaaaa catggacccc aacaccgaaa ggttttcatt aatagagagg      2040
     aatgttcatg gtgcattatc tgcttacaag caaatctatg atgaaaaaaa gaaacaaacc      2100
     aagcaaacca ccatggacat atttctgaaa agagtgacac ctcctcaaga agagcctcag      2160
     gcaggtcctt caggaggtat tccagaagaa ggcattgtta tcataggaga tgacagctcc      2220
     atgcgtgtta ttgcccctga agaccttcca gtgggacaag atgtggaggt ggaagacagt      2280
     gatattgatg atcctgaccc tgtgtaggcc taggctaatg tgtgtgtttg tgtcttagtt      2340
     tttaacaaaa aagtttaaaa agtaaaaaaa aaataawttt aaaaatagaa aaaagcttat      2400
     agaataagga tataaagaaa gaaaatattt ttgtacagct gtacaatgtg tttgtgtttt      2460
     aagctaagtg ttattacaaa agagtcaaaa agttwaaaaa attaaaaagt ttataaagta      2520
     aaaaagttac agtaagctaa ggttaattta ttattgaaga aagaaaaata ttttaaataa      2580
     atttagtgta gcctaagtgt acagtgttta taaagtctac agtagtgtac agtaatgtcc      2640
     taggccttca cattcactca ccactcactc actgactcac ccagagcaac ttccagtcct      2700
     gcaagctcca ttcatggtaa gtgccctata caggtgtacc attttttatc ttttataccg      2760
     tatttttact gtaccttttc tatgtttaga tatgtttaga tacacaaata cttaccattg      2820
     tgttacaatt gcctacagta ttcagtacag taacatgctg tacaggtttg tagcctagga      2880
     gcaataggct ataccatata gcctaggtgt gtagtaggct ataccatcta ggtttgtgta      2940
     agtacactct atgatgttcg cacaacgacg aaatcgccta acgacgcatt tctcagaacg      3000
     tatccccgtc gttaagcgac gcatgactg                                        3029
//
ID   L1M3A_5     repbase; DNA   ; ROD   ; 1765 BP.
XX
AC   .
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   L1M3A_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L1M3A_5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1765
RA   Smit F.A.;
RT   "L1M3A_5.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   5' end of LINE elements connected with L1MA7 and related
CC   subfamily
CC   3' ends, comprising the 5' UTR and part of ORF1 (from pos. 1164).
XX
SQ   Sequence 1765 BP; 610 A; 439 C; 382 G; 288 T; 46 other;
     gagtgawgtc agcaagatgg cagaatwgga ggtctcaggc tccagtctcc ctcacagaaa        60
     gtccgactag caactattca cagacaagaa cgcctttgtg aaaaatgcca gaacttggaa       120
     atgagrctga gacanctncg tggancacag aaacgaataa aaaccacatt aaaagggtaa       180
     gaggaaccgt ctcactttaa ccacgttgcc cctmagtcgg cacagtrcca cacngagaga       240
     awttccccgg gcctacagtt tctacagtgg gaaaagagag ctkgaggtgg acatccagct       300
     tccctagcat tccaagatgc ttcccaggar gcccactcyn atctcacctc atgaggaaac       360
     actgagggaa atggcanggc tagaccgtct ggagtcaggt agaaacaaaa aaagggggca       420
     nagctcatag taaccagtgc acggatcttg gtggtagctc tgtattcctg ccagcggtgg       480
     cgcctgatca gaggtaccag ccaatggcat agcccacccg caaagctgag ctggtcgctc       540
     ccagaagcac ggtgagaagt tcnacccggc ttgagtccct agatggccag cctccaaacc       600
     cagccttaga scctacccca gngctccacc caggcaggga gatacacacc acmatgtatt       660
     tcagcagagc acagaggcta gacctgcctg acccaggagc ccaaacagtg actcggccca       720
     gcctcaaagc ccaccccaag gacccacaca ggcaggaagg caaacgcgga ttgtgcakct       780
     ctaccagggc aaagtgccag ccaccgtcca ttcstwncag caattccatc taaccttgca       840
     gcctaggggc tggccctgcc caactgcaga gctsaaacag cggctccgcc tggccasaga       900
     gtmtaccccg tggcycagcc caatagacgc gactncaacg tccantcagc ggctccgcct       960
     aannncagag cccagccagc agccccgcct gacctcagag cmcaggcant agcccgncca      1020
     gctagagaac ccaamagcaa gcactgccta cccatggtta ttaccagctg tcccatccag      1080
     aatcacaagc tggactgaat aatgaaggtc twttcctgnc gaagaacacc tgtaaaagcc      1140
     agaagaggtg gctgcctmgt caaatgcatg gataccaatg caaggacgca agggttacga      1200
     agaatcaaag aatcatgaca cctccaaaat aaactaacaa agctccaaca atggamccta      1260
     aagaaataaa gatctataaa atgactggca aagaattcag aataatcctc ttaaagaagt      1320
     tcggtgagct acaagaatac atagatagaa aattaaataa aatttggaaa acaatacatg      1380
     aamaaaacga aaagtttgac aaagaaatag aaacgawtat tctaaaaccc aaatagaaat      1440
     cctagagatg aagaacacaa ttgctgaaca aaaaaattca ataaaaagct tcgacagcag      1500
     actcaatcaa gcagaagaaa gaatcagtga gctcgaagac agaacatttg aaattatcca      1560
     gtmagaggat caaaaataaa aaaaatgaaa aacagtgaag aaagcctata ggaattatgg      1620
     gacaccatca agaaaactaa catacgcata atagaaatnc cagaaggaga agagaaagaa      1680
     ggccagaaag yatattttaa gaaataatga ctgaaaactt cccaaatctg gggaaagatg      1740
     ccagcatcca ggtacaagaa gcaca                                            1765
//
ID   RLTR6I_MM   repbase; DNA   ; ROD   ; 7778 BP.
XX
AC   .
XX
DT   30-JAN-2004 (Rel. 9, Created)
DT   30-JAN-2004 (Rel. 9, Last updated, Version 1)
XX
DE   Mouse family of LTR retrotransposons - a consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR; RLTR6I_MM;
KW   RLTR6_MM.
XX
OS   Mus musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Mus.
XX
RN   [1]
RA   Karolchik D., Baertsch R., Diekhans M., Furey S.T., Hinrichs A.,
RA   Lu T.Y., Roskin M.K., Schwartz M., Sugnet W.C., Thomas J.D.,
RA   Weber J.R., Haussler D., Kent J.W.;
RT   "The UCSC Genome Browser Database.";
RL   Nucleic Acids Res 31, 51-54 (2003).
XX
RN   [2]
RP   1-7778
RA   Pavlicek A., Jurka J.;
RT   "RLTR6I_MM - a family of autonomous LTR retrotransposons.";
RL   Direct Submission to Repbase Update (JAN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the UC Santa Cruz
CC   genome annotation. Distantly related to RLTR4I_MM and HERVR. LTRs
CC   listed as RLTR6_MM.
CC   RLTR6I_MM_ORF: 2371-3619 (416 aa) pol (partial)
CC   MVIGATGSKFYPWTTKRALQINKNIVTHSFLVIPECPAPLLGRDLLTKLKAQVQFTSEGPQVSWGKAPVA
CC   CLVLNTEEEYRLHEEQPKNAVSSGWLTAFPNVWAEQAGMGLAKQVPPVVVELKADATPISVKQYPMSKEA
CC   REGIRPHIQRLLGQGVLVACQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVLDIHPTVPNPYNLLSSLP
CC   PERTWYTVLDLKDAFFCLRLHPKSQLLFAFEWRDPEGGQTGQLTWTRLPQGFKNSPTLFDEALHRDLAPF
CC   RARNPQLTLLQYVDDLLVAAASKELCHQGTERLLAELSDLGYRVSAKKAQICQTEVTYLGYTLRGGKRWL
CC   TEARKKTVMMIPSPTTPRQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEGVSLSSKERRTIPESF
CC   RLTR6I_MM_ORF: 5718-7245 (509 aa) env
CC   MKKTTTTIGQWQPLTILLSFVCAAGATLDLGNLNPHAPIQQSWDVLNEKGNIVWATTAVHPLWTWWPDLT
CC   PDICKLVAGSPNWDLSDHTDLSNPPPEERCVPNGIGSTYGCSGQFYRANLRAAHFYVCPGQGQSKRLQQE
CC   CGGASDYFCGKWTCETTGDAYWKPSSKWDLITVKRGSGYDKSNEGERNPYKYQESGCAFKNRPSGPCKDK
CC   YCNPLRIRFTENGKQHRLSWLKGNRWGWRVYIPLRDPGFIFTIRLTVRDPAVTLVGPNKVLIEQGPPVVL
CC   APPKVPTVPAPPTPQPNTVVPSLGTNTPLIKPTLASPPPLGTENRLVSLVQGAFLVLNRTNPNMTQSCWL
CC   CYASSPPYYEGIAQIRTYNITSDHSQCLWGENRKLTLAAVSGRGLCLGRVPQDKGHLCNQTQNIQSSKSG
CC   QYLVPPLDTVWACNTGLTPCVSMSVFNSSKDFCILVQLIPRLLYHDDSSFLDKFDHRVPLEKRTRYLNFG
CC   SSIRIGSSSWSRYRNRCLN.
XX
SQ   Sequence 7778 BP; 2075 A; 1952 C; 1966 G; 1785 T; 0 other;
     cagcgcgacc acccagaggt cctagaccca cttagaggta agattctttg ttctgttttg        60
     gtctgatgtc tgtgttctgt ttctaagttt ggtgcgatcg cagtttcggt tttgcggacg       120
     ctcagtgaga ccgcgctccg agagggaacg cggggtggat aaggatagac gtgtccaggt       180
     gtccaccgtc cgttcaccct gggagacgtc ccaggaggaa caggggagga ccagggacgc       240
     ctggtggacc cctttggagg ccaagagacc atttggggtt gcgagatcgt gggtttgagt       300
     cccacctcgt gcccagttgc gagatcgtgg gttcgagtcc cacctcgcgt tttgttgcga       360
     gatcgtgggt ttgagtccca cctcgcgcct tgttgcgaga ccgtgggttc gagtcccacc       420
     tcgcgtttgg tcacgggatc gtgggttcga gtcccacctc gtgcagaggg tctcaatcgg       480
     ccggccttag aaaggccatc tgattctttg agttgcttgt ggtcgacgca gagtcgccgc       540
     cgtttctggt ttcttttttg tcttagtctc gtgtccgctc ttgttgtgac tactgttttt       600
     ctagaaatgg gacaatctgt gtccactccc ctttctctga ctctggagca ttggaaggag       660
     gtgcgggtca gagcccacaa ccagtcggtg gaggtcagaa agggtccgtg gcagaccttt       720
     tgcgcctccg agtggccaac gtttggagtg ggctggccac ctgagggtgc ttttgacttg       780
     tcactaatcg ccgccgtcag gcgaattgtt tttcaggagg aagggggtca ccctgatcag       840
     atcccctaca ttgtgacctg gcagaatctc gtccaattcc cacctccttg ggtcaagcct       900
     tggaccccaa actcttcgaa actgacggtt gcttttaggt tgcccagtct gatgcaagcc       960
     ggaaagtccg gcccgtcagc accccccaag atctatccag agattgacga cctcctctgg      1020
     atggactccc aacctccccc ttaccccctg ccccaactcc agagagcagc caccgggttg      1080
     cagcggcccc accacatggg accagtagcc tagagagaaa tgggctcagg gatccggagc      1140
     aaacgggggg tggtccctga ggactcggag gcgccgaggc cgaagctcct ggggaaaagg      1200
     aaggggggcc tgattcaaca gttgccttgc cactcagagc acatgtggga gggccagctc      1260
     ccaggcacct aatgatctca ttcctttaca gtactggcct ttttcctctt ctgatttata      1320
     taattggaaa actaaccacc ctcccttctc agagaagtac ccctctggtc ttactgggct      1380
     ccttgagtca cttatgttct cccatcaacc cacttgggat gattgtcagc agcttttgca      1440
     ggttcttttt accacagaag aaagagaaag aatcctgagt tgctggaggc gagaaaaaat      1500
     gttctgggag aggacggcac acccactgcc ctccctaacc tccagtggac gaggctttcc      1560
     ccttgaaccg ccccaactgg gactacaaca ccgcggaagg taggggacgc ctccttgtct      1620
     aatcgccgga ctctagtggc agtctcgtct cagaggagcc gctagacggc ccaccaattt      1680
     ggctaaggta agagaggtct tgcaggggca gactgaacca ccctcagtct tccttgagcg      1740
     tctaatggag gcatatagga gatacacccc ttttgacccc ttgtcagagg ggcagagagc      1800
     cgctgtagcc atggccttca ttggtcagtc cgctcccgac attaagaaaa agctgcaaag      1860
     gctggagggg ctccaagatc atacgctcca agatttagta aaagaagcag agaaagtcta      1920
     tcataagagg gaaacagaag aagagaggca ggagagagag aagaaagaaa tggaggagag      1980
     ggaaaataga cgggatcgcc gtcaggagag aaatctgagt aaaattttgg ccgcagttgt      2040
     gaatgataga cagtcaggaa aaggtaaaaa agggctcctg ggcaacaggg cagtgaaacc      2100
     gccaggtggc agaaagataa ccacttggaa aaagaccaat gcgcctattg caaagagaaa      2160
     ggacactggg ctagagattg ccctaaaaaa cgggagcgat ccaaggtcct gaccctagaa      2220
     gatgattagg gaagtcgggg ctcagacccc ctccctgagc ctagggtaac tttgtccgtg      2280
     gaggggaccc ccgtcaactt cctgatagac accggagcag agcattcagt actcactagc      2340
     cccctaggca agctaggctc caaaaagacc atggtaattg gagccactgg tagtaaattt      2400
     tacccctgga cgaccaaacg agctcttcag ataaacaaga atatagtgac ccactccttt      2460
     ctggtgatac ctgagtgccc tgctcccctc ttggggcgcg atctgctaac caaactaaag      2520
     gctcaagtcc aatttacttc agaaggccca caagtaagct ggggaaaggc ccctgttgcc      2580
     tgccttgtcc tcaacacaga ggaagagtac cggttgcatg aagaacaacc caaaaatgca      2640
     gtctcttcag gttggctaac tgcgttcccc aatgtctggg cagaacaagc aggaatgggg      2700
     ttggctaaac aagtgcctcc ggttgtggta gaacttaaag ctgatgccac ccccatttcg      2760
     gtaaaacaat accccatgag caaggaagct agagaaggca tccggcctca tatccagagg      2820
     ttgctaggcc aaggagtttt agtggcctgt cagtccccct ggaatacacc acttctgccg      2880
     gttcgaaaac cagggaccaa tgactatcgc ccggtgcaag acctccggga ggttaacaaa      2940
     agggtcctgg acattcaccc cacagtcccg aacccgtaca atttattaag ctctctccca      3000
     cctgagagaa catggtatac agtcctggac ttaaaagatg ccttcttttg cctgcgtttg      3060
     caccctaaga gtcagctcct gtttgctttt gaatggaggg acccagaggg cggacagact      3120
     ggtcaactaa cttggactag gctaccacag gggttcaaaa attcccccac cctgtttgac      3180
     gaggccctcc atcgggatct cgcgcctttt cgcgctcgaa accctcagct taccctacta      3240
     cagtatgtgg atgatctctt ggtcgcggcg gcctcgaagg agctgtgtca ccagggaact      3300
     gagaggctcc tcgcagaact gagtgacttg gggtatcgag tttcggctaa aaaggcacaa      3360
     atctgtcaaa ctgaggtaac ctacctgggg tataccctcc gagggggcaa aagatggctc      3420
     acagaggccc ggaagaagac tgttatgatg atcccatcgc caactacccc acggcaggta      3480
     cgtgagtttc tggggactgc tggcttttgt agactctgga ttccaggctt tgcaacccta      3540
     gcagcacctc tatatccttt gactaaggaa ggggttagcc tttcgagtaa ggaaagaaga      3600
     acaatcccag agagcttttg aggctatcaa gtcgtctcta atgactgtcc cccgcgctag      3660
     cattaccaga cttgactaag cctttcgtcc tatatgtgga cgagagagcg ggtgtagcca      3720
     ggggagtgtt gacacaagca ctgggaccct ggaagagacc tgtagcctat ttgtcaaaaa      3780
     aattagatcc ggttgctagt ggatggccca catgtctgaa agctattgcg gcagtagccc      3840
     tgctgatcaa agatgctgac aaattgacaa tgggacaaca ggtgacacat gttgtagccc      3900
     ctcatgcctt agaaagtatc gtgcgacagt ccacctgaca gatggatgac aaatgcccga      3960
     atgacacact atcagagcct gctgctaaat gagcgtgtaa cctttgcgcc ccctgccatc      4020
     ctcaatccca gctacccttc tccctctaac aaatgattcc gtcccagtac atcaatgtac      4080
     tgacatcctc gctgaagaaa ctgggaccag aagtgacctg aaggatctga ccaaccctgg      4140
     cctggagctc ccagttggta cacggacggc agcagtttcc tgatagaggg gaagcgaaag      4200
     gctggagcag cagtgcggtg gtggacggga aaaaggtaat ttgggcaagc gctttgcctg      4260
     aaggaacttc ggcacaaaag gctgaactta tagcgcttat acaagccctc cgagaggcta      4320
     aaggtaagat cgttaacatc tacactgaca gccgctatgc ttttgctacc gcacacatcc      4380
     atggggccat ctacaggcag cgagggctat tgacatcggc tggtaaagac attaaaaaca      4440
     aagaagaaat tctggccctg ttggaagcca tacatgcacc taagaaggta gccatcatcc      4500
     actgccccgg ccaccaaaga ggagaagact tggtggccaa gggcaaccga atggcagact      4560
     tagtcgcaaa acaagttgct caaggggcca tgatcttaac tgaaaaaggt gatccgccca      4620
     aaagccctga ggacgagagg tataacataa aagagctatg gtggaccagt gatcccctcc      4680
     catatttttt tgaagggaaa atagaattaa ctcccgaaga aggaataaaa tttgtgaaag      4740
     gactacacca attcacccac ctgggagttg aaaaaatgat gagactaatt aaaaattccc      4800
     gataccaagt ccccaacctg aagtcagtgg ctcaaaagat tatagactcc tgcaaaccat      4860
     gtgcattcac taatgcaact aaagcctaca gagaacctgg aaagagacaa cggggagacc      4920
     atcctggagt gtattgggag gtagacttta ctgaagttaa acctggaatg tatggtaaca      4980
     agtatctgtt agtatttgta gacacctttt caggatgggt agaggcattt cccactaaaa      5040
     ctgagactgc ccagattgtg gccaagaaga tccttgaaag aaatcctgcc aagatttgga      5100
     atccctaagg taatcgggtc cgacaatgga ccagcctttg ttgcccaggt aagtcagggc      5160
     ttggccactc agttgggcat cgattggaaa ttacactgtg cttaccgccc tcaaagctca      5220
     ggacaggtag agaggatgaa tagaacctta aaagagacct tgactaaatt agccattgag      5280
     accggcggaa aagacttggg tggctctcct tcctcttgcg ctcttccgag cccgaaacac      5340
     tcctggtcgt ttcgggctca ctccttttga agttctgtat ggaggacctc cccccttaat      5400
     ggaagctggt ggaacattag tttccgactc tgaccctgtc ttaccctcct ctttgcttat      5460
     tcatttaaag gccctagaag tgattaggac ccagatttgg gaccaactga aagcagccta      5520
     taccccaggg accaccgcag taccccacgg gttccgagtt ggagacaaag tcttggtcag      5580
     acggcatcga accggcagcc ttgagccacg gtggaaggga ccctatttgg tgttactgac      5640
     aacccctact gcggtaaaag ttgacggaat cgcctcctgg atccacgcct cccacgtcaa      5700
     gagggccgcc agtcaagatg aagaaaacca cgacgacaat tggacagtgg cagccactga      5760
     caatcctctt aagcttcgtc tgcgccgcag gcgccactct agacctaggg aaccttaacc      5820
     ctcatgctcc aattcaacag tcctgggatg tgcttaatga aaagggaaac attgtatggg      5880
     caaccactgc agtccatccc ctctggactt ggtggcctga tctcacgcct gacatctgta      5940
     agttagtggc aggatccccc aattgggacc tctcagatca tactgatctt agcaacccac      6000
     cccctgagga gcggtgtgtc ccaaatggga tagggagcac atatgggtgt tcggggcagt      6060
     tctaccgagc taatcttaga gctgcacatt tttatgtttg ccctggtcag ggtcagagca      6120
     aaaggcttca acaagaatgc gggggggcat cagattactt ttgtggtaaa tggacatgtg      6180
     aaacgacagg ggatgcttac tggaagccct cctctaaatg ggacctaatc acggtaaaac      6240
     gaggtagtgg ctatgataag tcaaacgaag gagaaagaaa cccctataaa tatcaagaga      6300
     gtgggtgcgc ttttaaaaac agaccctcag gaccatgcaa agataaatac tgcaaccccc      6360
     tacgtataag gttcaccgag aacggaaaac aacaccgtct gagttggctt aaaggaaata      6420
     ggtggggttg gcgagtatac attccactaa gagatcctgg gttcattttc acgatcagac      6480
     tgacagtgag agacccggca gtgacactcg tagggcccaa caaggtcctt atagaacagg      6540
     gccccccagt cgtactggct cccccaaagg tcccgactgt accagctcca ccaactccac      6600
     agcccaacac agtggtaccc tccctaggaa ctaatactcc cctcataaag cctaccttgg      6660
     cttccccacc gcccctagga acagagaacc gtctggtcag tctagtccaa ggagcttttt      6720
     tagttctaaa tagaactaac cctaatatga ctcaatcatg ctggttatgc tatgcctcta      6780
     gcccccctta ttatgaagga atagctcaga tcaggactta taatattact tcagatcatt      6840
     ctcaatgcct ttggggagaa aacagaaagt tgactctagc agcagtttca ggaagagggc      6900
     tttgtctggg ccgggtacct caggataaag ggcacctctg taatcagacc cagaacatcc      6960
     agtctagcaa aagtggtcag tatctagtgc ctcccctaga cacagtgtgg gcttgcaata      7020
     ccggtctcac tccttgtgtg tctatgtctg tttttaatag ttccaaagat ttctgcattt      7080
     tggttcagct tattcccaga ctcctgtatc atgatgatag ctctttttta gataaatttg      7140
     accatcgggt cccgctggaa aagagaaccc gttaccttaa ctttggcagt tctattagga      7200
     ttgggagtag cagctggagt aggtacagga accgctgcct taattaagac cccccaatac      7260
     tatgaagaac tacgtgcagc tatggatatt gatcttagaa ctatagaaca gtctataacc      7320
     aaattagaag aatctttaac ttccctgtcc gaagtggtgc tgcaaaatag aaggggatta      7380
     gacttattat tccttaaaga aggaggactc tgtgctgcct taaaagaaga atgttgtttt      7440
     tatgttgacc attcaggagt aatcaaagat tctatggcta aacttagaga acgcctagat      7500
     atacgtaaaa gagaaagaga aagccaacaa ggatggtttg aaagctggtt taataagtcc      7560
     ccttggctca ccactctcct ctccactata gcaggacctt taattacact tatgcttttg      7620
     cttacttttg gcccatgcat ccttaataag ttagtagctt ttattagaga aaggataaat      7680
     gcagtacaag ttatggtact aagacaacaa tatcgggtcc ttcaggaggt tgaaaactcg      7740
     ttctaagatt agaactattt actagaagaa gtggggaa                              7778
//
ID   HERVL68     repbase; DNA   ; ROD   ; 3037 BP.
XX
AC   .
XX
DT   18-AUG-1998 (Rel. 6.6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   HERVL68 repetitive element - a consensus.
XX
KW   Noncoding foamy-virus-like endogenous retrovirus; MER68; HERVL68.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-3037
RA   Kapitonov V.V., Jurka J.;
RT   "HERVL68.";
RL   Direct Submission to Repbase Update (AUG-1998).
XX
CC   [1] (Consensus)
XX
CC   HERVL68 is an internal portion of LTR retroelement flanked by
CC   MER68 LTRs. It has patchy 70% DNA identity to HERVL_40 including
CC   its portions that encode Pol. However, HERVL68 consensus does not
CC   code protein sequences similar to any retrovirus.
CC   It is difficult to say now whether HERVL68 hase been proliferated
CC   in
CC   the genome as a nonautonomous LTR retroelement related to one of
CC   HERVL-like active retroviruses, or it was an active HERVL-like
CC   retrovirus which lost the coding potential becouse of the
CC   multiple mutations.
XX
SQ   Sequence 3037 BP; 833 A; 581 C; 683 G; 829 T; 111 other;
     gcactrtntg ggannnttnn tggaanggaa gaagagggaa gatggatgac aaaattatgc        60
     ctgggtvgct atggagttat tcatggtatr aaayagcagc tragctgctg tctgttatga       120
     gaggtaaaag ttacctgtgr aatttgaaaa tgatagatcc aatcacagag agttggcnys       180
     ctggatcccy tggctgcttt tggccwtkct ggctaaagtn aggaaraarc acancycarr       240
     tgatgtcttt ggtttttgtt ctytcctcca rktgggagga gaaagggccc aaacattccn       300
     aaangtgagc ttnntwtgsa swaaagwyaw waacaktwnn ttgnagttnt cttctccagg       360
     tggnaggngn aangrtcnga aaantnctnn aggcnngnwt tgagtgrrcc aaraatgtta       420
     aaagtttgca ttgctctctc ctccaagtgg aagraaaaar gttaaatcag ttcccagggc       480
     tggagyaang ctttagataa accagaggag gagaaaaagt aaaaaaaaag cccnccaaac       540
     aagwaaacca ctctagccnt ttctacagct tagctgctgc yacagcaact caacnccctc       600
     ctttcmctac aaccttcanc tccagcanct gtaatgttaa ccytgtaaad tgctnaattt       660
     actgctaggg gtttgantaa acatghaatg agtaaaaaga aggaaatnat tatwgaatsr       720
     ctttgtattt tgtggctatt gcatctggat gtatgataaa aattratgta aaatgttata       780
     tgcttgtaat ttcataaatg ctagaggaat catcctaatm gggaaagctg caaagaaaaa       840
     aaagttagtg gnawcacaac tcccttgctt tytgctgcyg gtgggtggat tggaatttaa       900
     actctttgag tattggaaas agaacaagtc tccataactg atgatttttg cctattggar       960
     cctctgnaaa aagggagaca acatnaaaag agaggcaatc tccagatgga gatacacttt      1020
     tggagtttta aaaanyagtt tttagtttgc taatgwgctc ttgytgaaat gagatgtctg      1080
     acccttagag gctgatgatt ttcagcctga tgtgcatgat ttttgagggg gtcaatttgg      1140
     actctaarac tgacaagata aaaaggmcty ttagaaaagc cttgcttgtc acttggactt      1200
     ggaatacagc tgtctggntc ttcagtntct cagctttgct gctgctgaag aaaagccact      1260
     ggcttttttg gaatcctgaa ttcacagatc ctaattgcct gtacctgact ctaagctgaa      1320
     acctcatact gtctgctgtg rgctgtttca gcctcgngnt gagctgtgct gaactgaaat      1380
     nngntgaaat ggctcgactc aatgaacaga actcagactc tgggactgtt gcagatttag      1440
     gaccaccctc tgtggggcca taaactatga aaacatcacg gatgctggct ggactgtctg      1500
     ggtcacatac agatgcccac aggaaagggc ttgttctctg atgggaccat ctaaaattga      1560
     gctgctgatt ggctctatat ttctgataca gagactaatt gcattcttaa cttgtgattt      1620
     ctgtcgaaag ctgcaagttg ggggagggca cattacaaga agtgtgaccc ctccacccac      1680
     tcctgacaga ttggacttga ccccctctcg gggatgtctc actgctattg acttgttgtg      1740
     ttcggctttc tggattagtt gcagtttgca acaatggact gacagcctga gtctacttcc      1800
     ctcacctttc tcctggtaca cacatcttag tgagacagtt tgattattaa atgcagctgt      1860
     ccccagaaag ggattgatct tttttttcct aggctgctca ccggataaat gatcaggacg      1920
     aaaagggtgg gaaggttatg taaactcatt ttgaaaaatt ttgaaaattc agaattcatc      1980
     ctgaccaatt tctgaacatg atgtgtcttt ccggttaagt tgtataaaaa tgtttttcta      2040
     taaaaatgtt tttgtccctc ttgcatacaa cccttccaga caaaaggtct gggtgagagt      2100
     aagagatgat tggagaaata tgaagttaag attgtaagtt atgaatattg ctgaatggga      2160
     cacactgatt ttgtaacaac ggagaaaaaa gaaaaaccta tggaggcacg gggtgtgaga      2220
     gagggcatta atgatctttg tttttcagaa ctgctcctgg aagctttccc ctcttcctga      2280
     agaaaaattc cccatgctgc ctttccaagc tgctgcgagc gctttgaatt caaactgact      2340
     gctgagccta agatcacacc tgacagcgct gactatgaga cagcaggggg tggccccagc      2400
     tcctgcactt tccacgaaga acacctccag atgtcatcca cacacatgag acggatgaac      2460
     tggtgtcatg gacaagcaaa actgtttgga actgactgcc tttaggcagt ccctctgaaa      2520
     ccaaggacta aactgaatta attggactag actctttggg agtagtcccc gtggtaagag      2580
     gccacactgg ggaccctgtt aacctgtact gcctgactaa tgtatgtcct gcttggggta      2640
     ccctaacaat tgtaaactct ttgtttccag gggtaccacg tgtgccctct gggattgtac      2700
     ttttatgtgt accctgacta tcatgacact gcctcagccc tggaaggctt tcaggtcagc      2760
     ttcaacttac tggccagagt tgtgctgtgc ctgaattgat gcctcaggcc araaaaaaaa      2820
     aggttaatac agaaacttaa ggaggaagcc acctggcttt ctaagataga cctttatggt      2880
     taatgggatt tgttttaact ggctaaattc aggaccccta aagggcataa actgagatca      2940
     atactgcagg ttggtctcac cctgctgcgt ggggtcctac tgataataat tttgctgtaa      3000
     agatgccttg gccaaggggg tggactgtgc agaagag                               3037
//
ID   L1M3_5      repbase; DNA   ; ROD   ; 3806 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 6, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 3)
XX
DE   L1M3/4 LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; MER43; L1-43_5; L1M3_5.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1719-1894
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive element (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328 (1993).
XX
RN   [2]
RP   1631-1894
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. thesis (USC 1995).
XX
RN   [3]
RP   1-2253
RA   V V., Jurka J.;
RT   "L1M3_5.";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [4]
RP   1-3806
RA   Smit F.A.;
RT   "L1M3_5.";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [4] (Consensus)
XX
CC   5' end of L1, probably of the L1MB1-8 subfamilies.
XX
SQ   Sequence 3806 BP; 1296 A; 787 C; 873 G; 729 T; 121 other;
     agagcaagat ggcagaacag aatgctcnaa caattgcccc catyctryyc cnccacagga        60
     acaccaaatt gaacaactat ctacacaaaa wagcaccttc ataagaacca aaaatcannt       120
     aagcgatcac agtacctggt tttaacttca tatnactgaa agaggcactg aagagggtag       180
     gaaagacagt cttgaatcgc caacgccgcc cctcccccat cccccggcag tggccgcacg       240
     gcacggagag agaatccgcg cacttgggng agggagagcg cagcgattgt gggactttgc       300
     gttggaantc agtgctgccc tgtcanagcg gaaagcaaca ncgggcagaa ctcagccggc       360
     gctcatagag ggancattta gaccagccct agncagaggg gaatcaccca tcccagcggt       420
     cggaacctaa gttccggcaa gcctcgccac cgtgggctaa agtgcnntag ggtcctaaat       480
     aaacttgaaa ggcagtctag gccacaagga ctgcaattcc tgggcaagtc ctggtgctgt       540
     gccgagctaa gagtcagtgg acttaggggg cacacgacct agtgagacac yagccggggt       600
     ggccaaggga ntgcttgcgc cacccyctcc cycaacncca ggcagcacaa ctcgcagctc       660
     cgggagagac tccttccctc cgcttnagga gaggagaggg aagagtaaag aggactttnt       720
     cttgcaantc ggataccagc tcagccatag taggataggg caccgagcag agtnnwgagg       780
     ycccnattct aggccctagc tcccggatga catttctaaa cacaccctgg gccagaaggg       840
     aanctgctgc cttaaaggga agganccagt cctagcagga ntcatcacct gctgactaaa       900
     gagcccttgg gccctgaata atcagcagcg atacccaggt tagyactcgc cgtaggcctt       960
     gggtgagant ctgagacgtg ctggnttcag gtgtgacnca gcacattccc agctgtggtg      1020
     gctacgggga gagactcctt ctgcttgaga aaaggagagg gaanagtaaa ggggactttg      1080
     tcttgcagct tagntaccag cttggccaca gtggagtaga gcaccaagcg ggctcttagg      1140
     gtccccgatt ccaggccttg gctgttggat ggcatttctg gacctgccct gggccagagg      1200
     agagcccact gccctgaagg gagagtctca ggcctggcag cattcaccgc aagctgacag      1260
     aagagtcctt gggctttaag tgaacattkg cgrtagycag gcagtacttn ctgtgggcct      1320
     gcggcggtgg tngccatagg gagagnctcc tctgcttgtn gaaaggggag ggaagagtgg      1380
     gaagaacttt gtcttgtggc ttgagtgcca gctcagccgc agtagaacag agcaccgggt      1440
     agatttctaa ggtttccgac tccaggccct ggctcctgga tagcatcyct ggacgtgccc      1500
     ggggccagag agaactcacc accctgaagg gaaggataca agnctggctg gctttaccac      1560
     ctgctgattg tagagtcccg gggccttgag cgaacataag cagcggccag gcagtggtta      1620
     ctgcgggcct tgggcgagac ccagtgctgt gctggcttca ggtctgaccy agtacagtcy      1680
     cagtgrtggt ggccacaggg gtgcttgtgt cacccctccy ccagctccag gcagctcagc      1740
     acagagagag agacngagtt tgtttgrggg aaagtaargg aagagaacaa gagtctctgc      1800
     ctggtaatcc agrgaattct tccagatctt atccaagacc acnaaggcag tacctctacg      1860
     agtctgcaag agccacagta ttactgggct tggggtgccc cctaatgcag atacggccgc      1920
     agtgacaaaa aacttagatc acaacacyca agtcccttca aatacctgga aagcyttccc      1980
     aagaaggacg ggtacaaaca agcccagact gtgaagacta caataaatac ctaactcttc      2040
     aatgcccaga cacagacaaa catctacaag catcaacacc atccaggaaa acatgacctc      2100
     accaaatgaa ctaaataagg caccagggac caatcccgga garacagaga tatgtgacct      2160
     ttcagacaga gaattcaaaa tagctgtttt gaggaaactc aangaaattc aagataacac      2220
     agasaaggaa ttcagaatyc tatcagataa atttaacaaa gagattgaaa taattaaaaa      2280
     gaatcaagca gaaattctgg agctgaaaaa tgcaattgac atactgaaga atgcatcaga      2340
     gtytcttaac agcagaattg atcargcaga agaaagaatt agtgagcttg aagacaggct      2400
     atttgaaaat acgcngycag aggagacaaa agaaaaaaga aaanaatgaa gcatgcctac      2460
     aagatctaga aaatagcctc aaaagggcaa atctaagagt tagtgacctt aaanaggagg      2520
     tagagagaga gataggggtr aaagtttatt caaagcnata ataacagaga atgtcccaaa      2580
     cctagagaaa gatatcaata ttcaagtaaa agaagnttat agaataccaa gcanatttaa      2640
     cncaaagaag actacctcaa gacatttawt aatcaaactc ccaaaggtca aggataaaga      2700
     aaggatccta aaagcagcaa gagaaaagaa acaaataaca tacaatggag cnccgatata      2760
     gtctggcagc agacttntcg gcggaaanct tacaggccag gagagagcgg catgacatat      2820
     ttaaagtgct gaagaaaaaa aaaaaaactt tnatcctaga ntagcgtntc cagngaaaat      2880
     atccttcaaa catgaargag aaataaagac tttcccagac aaacaaaagc tgagggattt      2940
     cntcaacacc agacctgtcc tacaagaaat gctanagnga attcttcaat gtgaaagaaa      3000
     aggacgttaa tgannaataa naaatyatct gnaggtrcaa aactcactga taatagtgcg      3060
     cagaaaaaca naatattata acantgtaat tatggtgtat aaactactct tragtagaaa      3120
     gactaaaaga tgaaccaatc aaaaatanta actanaacaa cttttcaaga catagacagt      3180
     acnntaagat anaaatagaa acaacaaaaa gtttaaaaat tggnggacga agttaaaatg      3240
     tagagttttt attagttttc ttnttgttnn ttgrtttttt tnaanttatg taatnagtgt      3300
     tattatcagt ttaaaatata ggatattatt tgcaagcctc atggtaacct caaatcnaaa      3360
     aacatacaac ggatacacaa aaataaaaag caagaaatta aaacatatca ccagagaaaa      3420
     tcaccttcac taaaaggaag acaggaagga aggaaagaan aaagagaaga ccacaaaaca      3480
     accagaaaac aaataasaaa atggcaggag naagtcatta cttatcaata ataacattga      3540
     atgtaaatgg actaaactct ccaatcaaaa gacatagagt ggctgaatgg atataaaaat      3600
     aagacccaat gatcggtcgc ctanawgwaa cacacttcac ctataaagac acakatagac      3660
     tgaaaataaa gggatgaaaa aagatatttc atgcnaatgg aaaccaaaaa agagnaggag      3720
     tagctatact tayatcagan aaaatatatt tcaagacgaa aactataaga agagacaaag      3780
     aaggtcacta tataatgata aaggag                                           3806
//
