ID   p-SINE1_OS  repbase; DNA   ; ORY   ; 155 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.1, Created)
DT   17-NOV-2004 (Rel. 9.1, Last updated, Version 1)
XX
DE   Rice SINE p-SINE1 - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   p-SINE1_OS; waxy gene.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RA   Prathepha P.;
RT   "Molecular characterization of a retrotransposon that insert to
RT   the intron 10 of the rice Waxy gene.";
RL   Unpublished.
XX
RN   [2]
RP   1-155
RA   Gentles A., Jurka J.;
RT   "Consensus of p-SINE1 from rice.";
RL   Direct Submission to Repbase Update (OCT-2004).
XX
CC   [2] (Consensus)
XX
CC   Rice SINE element located in intron 10 of the waxy gene.
XX
SQ   Sequence 155 BP; 53 A; 29 C; 36 G; 37 T; 0 other;
     aattcagtgg caaaaaaaaa actcgaatat tagggaagga cctaatatca aataattaga        60
     aggggtgagg ctttgaaccc agatcgtcta gtccaccacc ttgtggagtt agccggaaga       120
     cctctgagca tttctcaatt cagggcaaat gatgt                                  155
//
ID   SZ-50       repbase; DNA   ; ORY   ; 11690 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice gypsy-type retrotransposon SZ-50.
XX
KW   LTR retrotransposon; GYPSY superfamily; RIRE2; SZ-7; SZ-50.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-11690
RA   Jiang N., Wessler R.S.;
RT   "SZ-50: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 104-104 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-50 is a gypsy-type retrotransposon. It has 530bp LTRs.
CC   Internal region similar to RIRE2 and SZ-7.
XX
SQ   Sequence 11690 BP; 3057 A; 3253 C; 3124 G; 2256 T; 0 other;
     tgttggcgga tggcatgagt cccttcgacc gaatctgccg aaacccatgg cgaagaccac        60
     gagccaagga tgatgcgagg cgaagggtcg cacgagtgca cgccgaagaa ggacgacttc       120
     gccatgccga agaaggacga cttcgccagg accggttcgc cccggcatcc agcccagaga       180
     aggacggctt cgccaggtcc agttcgcccc cgcgagggcc gaagtagcct tctcggccca       240
     ccaagcttag agaccatagg gccggcgatc gcccgatggc ccatcaagag cccatgagcc       300
     cccctttacg ttatgtaacc ctgtaaacgt ccctttcata agggcaacta tgtaaattcc       360
     tcagtacaac ctagacccta gaagtgagaa tctgtaacgg ggctataaat agccccctag       420
     ggccatgtaa tacaggggag aaaattcaag aaatcaatat acttcgtttc tttccaacca       480
     ctgttaagta accacgtctt tcgacgtatg cggttgtcgt ttcgataaca gctggcgccg       540
     accgtgggga cctccgagcg aaaccactga gagcgaatgc caccgaagaa ggtcgtgaag       600
     gagaaggtta caaggcgaaa ggaaagcgac gccggggcgg acatggccgc cgaagaagga       660
     gcggaacctt cggcatcaat cgccgaagtg ggaggagccc cgtccgcttc ggcaccggca       720
     ccgtctgctt cggcgctgat cacagcattg ctgccttcgg cccctgccac ctctgagcag       780
     gcgccaaggg tggatgaagt ggcgaaggcg gctgcagcgg caagggcgct tcagaccagg       840
     gcggagatcc tttcggcagg acagctgctg gtgccccctg ccgctccgtc gcagccaaca       900
     gtggcccaag ccgcactccc tgccgtgcaa gttcaagtca actccgaccc tgaaacacaa       960
     gccgaagccg atatggaaac tattaggcag aacatggcac gactccaaga catgcttcgc      1020
     caaatgcaag aacagcaaca agcgtacgag gcggcgaggc ggtccagggt cccttcggca      1080
     ccaatcctcc aatattcggc agggtatgtc ccgcctcaag tctgtccaca agtgcagtcc      1140
     cagcccgttc cgccgcaagt ctcacaggca tcggtgcact tcgccgggca gccggcagcc      1200
     gcagcagtgc accaggcccc ctatggacaa gctcagcaga tcgcggccca agtgtagcct      1260
     caaccacttg gccaggtgtc gcaaaccgta gcggaagggg cttcggctct gcaggcgcaa      1320
     ttccaagctt tccttcagca actcaatcag ccccacaaca tttcgagtac agctccctcg      1380
     actcgtccag aggggagtac aggtcaaggt gcacctagtt ggttgccgcc gaaccagccg      1440
     aatctggggg cttcgccatg gagtcagaca cctcagtacg acttcgtcaa tgccgcccag      1500
     gcgcaaactg ttcggccgca aggaccgaca ccaggctttg gaacaagcca agcaccagcc      1560
     caagtcgcca tgacatggtc gcagccagtt ttcgacccat ccatggcgac ccagcaagta      1620
     ttaccaatcg caaccgggca gccgagcacc atggctcaaa ctcacgcgca agccgtaatt      1680
     tcacctttcg ccacgccgta cccgcagcaa ggtgcagcaa acagagcggg gggcgagaag      1740
     gggctgccgc tgagtggggg aattaagaac cgcccaattc caccccagtt caaattccca      1800
     cccgtcccac gctactcggg cgaaactgac ccgaaggagt tcctatccat ctatgagtcc      1860
     gcgatcgagg cggctcatgg cgacgaaaat accaaggcaa aggtaattca cctcgctctg      1920
     gacggcatcg cccgttcttg gtatttcaat ctgccagcca atagcattta ctcatgggag      1980
     caattgcgcg atgtttttgt tcttaacttt cgaggcactt atgaggagcc gaagacgcag      2040
     cagcatctgc tcggcattcg ccaaaggccg ggagaatcga taagagaata catgcgtcgc      2100
     ttctcgcaag cccggtgtca agttcaagac ataactgagg cgttagtcat aaatgctgct      2160
     tcggccggtt tgctcgaagg cgaactcaca aggaaaatcg ccaataagga accacaaaca      2220
     cttgagcatt tgcttcgcat cattgacggt tttgcaaggg gtgaagagga ttccaagcga      2280
     cggcaagcca tacaagctga gtacgataaa gcttctattg ccgccgccca agctcaagca      2340
     caagttcaag ttgccgaacc acctcccctc gcggttcgtc agcctcaaac ggcgatccaa      2400
     gggcagccgc caagacaagg tcaagctccc ataacctgga aaaagttcag gaccgaccgc      2460
     gcgggcaagg ctgtgatggc cgtcgaagaa gtgcaagccc tccgcaagga gttcgacgcc      2520
     cagcaagcaa gcaaccatca gccggtccgt aagaaggtcc gaaaagacct ttactgcgct      2580
     ttccatggac gctcttcgca taccacagag caatgccgaa acatcaggca acgtggcaac      2640
     acgcaagata ctagaccaca gcaaggagca accgtcgaag cacctcgtga agcagcccaa      2700
     gaacaacccc cggtcgaaca acgtcaagat gcacagcgaa gagtaatcca agtgattacg      2760
     agggccgacc cgctcggcca tttgtccaaa aggcagaaaa agatgcagat ccgagcggtc      2820
     cacagcatca cttcgacggg ggagggggcg ccgcagtata tgaaccagcc aatttctttc      2880
     gggccagaag acgccgaagg agtcatgttc ccacatcaag atccactggt aatatcagct      2940
     gagatagccg gctttgaagt ccggcgaatc ctgttcgacg gagggagttc ggctgatgtc      3000
     atcttcgccg aggcgtatgc taagatgggg ttgcccaccc aggctcttac accagcacca      3060
     acgtcactcc gggggttcgg cggagaggca gttcaagttc tcggccaggc acttctgctg      3120
     atagctttcg gctcgggaga aaacagacgc gaagagcaag tactgttcga tgtcgtcgac      3180
     atcccgtaca actacaatgc catcctcggc cgtgcgaccc tgaacaagtt cgaagccatt      3240
     tcccaccaca actatctcaa actcaagatg cccggcccag cgggagtgat agtggtcaag      3300
     gggcttcagc cttcgcctgc gtcgaaaggc gatcaagccg tagtcaacag ggccatgcac      3360
     aatgtcgaag ccgaactcca cagccggcca aaacacgcgc caaaacccac acctcacggc      3420
     aagatagtaa aagtgcaggt tgacgatgcc gaccccacaa agctcgtatc gctgggagac      3480
     ggcatgggca aacaagaagc tgagagcatc ctagcggtgc taaagaagaa cattgatatc      3540
     ttcgcctggg gccctgacga agtggggggg gggggtttcg gcagacctca tcatgtatca      3600
     cctagcagtc aagccggatg ccaagccaag agagcagaaa ctgcgtaaga tgtccgcaga      3660
     tcgtcaagag gcggcgaaag ccgaagtcca aaagctgctc aaggctgggg tcattcagga      3720
     gatcgtccac ccagaatggt tggcgaatcc agtactggtg cggaagtcaa acggcaaatg      3780
     gcgaatgtgt gtagacttca cggacctgaa taaggcatgt ccaaaagacg atttcccttt      3840
     gccgcggatt gatcagctcg tggattcgac agccggctgc gaactcatga gtttcctgga      3900
     cgcatattcc ggctatcatc agatccatat gaacccaccg gacatcccga aaactgcttt      3960
     tatcaccccg tttggcactt tctgtcacct caggatgcct ttcggcttga ggaatgctgg      4020
     ggcaaccttc gccagattgg tgtacaaggt cctttgtaat cagttagggc gaaatgtgga      4080
     agcttatgtt gacgacattg tcgtaaaaag ccgtaaggtt ttcgatcatg cgtccgatct      4140
     gcaggagact tttgacaact tgcgcacagc gggcataaaa ttgaatcctg agaagtgcgt      4200
     cttcggagtt cgcgcgggca agttgttggg attcctggtt tctgaaagag gaatcgaggc      4260
     gaacccagaa aaaatcgatg ccattcggca aatgaagcct ccatcaagca cacatgatgt      4320
     acaaaagctt gcaggccgaa ttgcggcgct tagccgattc ctctcaaaag cggccgaaag      4380
     aggtctccca ttcttcaaga ccctccgggg cgcaggaaag ttcagttgga caccagaatg      4440
     ccaagcagcg ttcgacgacc taaaacaata cttgcaaagc ccaccagccc tcataagccc      4500
     gaatccagga agcgaactgc tgctgtactt agcagcctca ccagcggcag taagcgccgc      4560
     ccttgttcaa gaaacagagt tcggccagaa accagtttat tttgtctccg aagcgctgca      4620
     agaggcgaag acaagataca tcgagatgga aaagcttgct tacaccttgg tgatggcttc      4680
     gcacaagctc aagcactact tccaggccca taaaataatg gtgccttcac agtacccttt      4740
     gggcgaaata ctacgaggca aggaaatctt tgggaggctt agtaaatggg cagcagaact      4800
     atccccgttt gatttgcatt tcgttgcgcg cactgctgtc aagtctcaag tgctagccga      4860
     ctttgtagcc gaatggaccc cagtgtcaac ctctgaaccc gagcccgtcg agcagccctg      4920
     gataatgtgc tccgacggtt catggtcgca caagggagca ggcgtcgcgg caattctcat      4980
     ttcgccgaac ggtgtaccag ttcggtacgc cgcaaggttg cagtttaaca caaccaacaa      5040
     cgcagcagaa tacgaagcca ttcttctagg cctaagaaag gcgaaagcac tgggagttcg      5100
     gcgcttgcta attcgaaccg attctaagtt ggtagcaagc catgttgaca agtcctttga      5160
     ggcgaaagaa gaaggaatga aaaagtattt ggaggctgtc cgaaccatgg aaaagtactt      5220
     caccggcata acagtcgaac acttgcccag aggccagaat caggaagcag acgctctggc      5280
     gaaatctgcc gctagtggcg gaccgcattt gccgggcata tttttcgagg tactgcacac      5340
     accaagcgtg tctgtggaca gtctggtctt aacaattgac caggtaaaac tgggagaaga      5400
     cccaaatgac tggcgaaccc cgtttgttaa atatatcgaa actggctggc ttccggatga      5460
     tgaagcagaa gcaaagcgct tgcaaatcag agccacgaag tataagttaa tctcaggcca      5520
     actttaccgt tctgggatgc ttcaacctct actccgttgc gtttctttcg ccgaaggtga      5580
     gcaaatggcg aaggagatac accaggggct atgtggcgct caccaagctg caagaacggt      5640
     ggcctccaag gtgtttagac aaggggttta ctggccaact gtgttgaaag tctgtgcaga      5700
     gcagattaag aagtgcgaga gctgccagcg tcatggctga agtcaaaccg cgccccacta      5760
     tgacttgcag cccattgcgc caatttggcc cttcgccaga tggggactgg acatcattgg      5820
     cccaatccct tcggcacgaa acgggtataa gttcgccatt gtggctgttg aatatttctc      5880
     tcggtgggtc gaagccgaac tccttggtgc aattacttcg gcagcagtac agaagttcgt      5940
     gtggaaaaac attatctgcc ggttcggagt accaaaggag ttcatcaccg acaacggcaa      6000
     gcagttcgac tctgaaaagt tcagacaaat gtgcgaaggg cttaacctgg aaataaaatt      6060
     cgcatcggtc gcacacccgc agtccaacgg agcggccgaa cgaacaaatg gcaagatcct      6120
     ggaagcacta aagaaaaggc tcgagggggc agcgaaaggc aaatggccag aagagatgct      6180
     atctgttctt tgggccctgc gaacgacccc cacaagacca acgaggttta gcccgttcat      6240
     gctcctctat ggcgacgagg caatgacccc agcagagcta ggggctaact caccaagggt      6300
     ggtgttctct gggggcgaag aaggacgcga ggtgtcgctc gaactattag aaggagtaag      6360
     agtcgaagca ctcgagcaca tgcgcaaata tgccgtaaac acttcggcaa cctacaacaa      6420
     aaaggttcga ccgacagatc tcttgcccgg tcagctcgtc ctaagaaaaa aggcgaaccc      6480
     agtggctgtc ggcaagcttg aatcgaaatg ggaaggcccg tacctcatca agcacaaatc      6540
     aaggacgggg tcttttcggc tggcaacatt ggaaggcgag gggctcgacc actcctggaa      6600
     tgctgcctcc ctcaagcgct tttatgtcta gaataggtgg cacccaaatc gccaacttgt      6660
     aaaaatgtat atagtcatgt aagccattcg gcactatgta cgcctcccgg caaaaaaaaa      6720
     aggaaaaaaa aagaggaaaa tgaaaaaaga aaaaaaaact ggatgtaggg ttattatccg      6780
     ccatggaggc ccgaaccagt ataaaacctc tgtgtcctct accttctttt ttttattgtg      6840
     tgattgataa cttgtggaaa aaccccaagg caaacgcctg atcagcgaaa aagccagggg      6900
     ggcgaaacga atcggccgaa gcatcgctcg ccgaacgttg aaaccacaac agcttgtttc      6960
     ggaaataact aaccgaacgc cattacattc gatcagcatg aaagtaaaag cgtctatcga      7020
     aaacggaaga cgaaagctgg aaaagtcgaa gcctatttcg ctaatgtatg caaaggggcc      7080
     gacatgttcc gacccaacga aagcacgcga agtgacaatg cgagaatagc gaaaaggaag      7140
     taaagcacac ttttattgat tcaaaaaaaa aagggaggta tcgaggatta caactcaaac      7200
     agtgcaatat agatcacaaa taaattacat cttcgccctc gtgtcccctt tctcccctgt      7260
     cggctaaaga atgatcgggc gaacaaggtt cgtcgtcgct aatatcatac accactctaa      7320
     ggggagaagg gggcgaaacg caaattatgc cataacggcg ccgaaagatc gcttcctgcc      7380
     gatcggtctt ctgatgattc cgccaaaagc gaagccatgt cgtccaaacg tcttgaatga      7440
     acaagatcat aatcctccag ggttcgctca gggtgactcc gaagccaccc agcaaccttg      7500
     aaaaccttat agctgtgtcc atttatcagc atttcacgat acacaggccg aaacgggcat      7560
     cgcatcttcg gcaaatcttt taaagccaca aatttctcgt tttggtttcg ccaacttcca      7620
     gacgggggtc gaatacacag ttttcggcga ataccctggc agataatgca gaaatggcaa      7680
     aaaaccaatc gaatagtgag aagtaggcga aagcataaca aggaccaaca gtaaagggcg      7740
     aaaggtaggt ctgttataca tattttaaat gcccaacgac aacttagtct cggttacaat      7800
     aaaaaggtta gcggcagcct gccgaatata caacggttcg ccacccctgg cgaaccccaa      7860
     aaaaaaacta tgaaaatcta aagaaagggc ggagggcctc acacctctgg gtgatcctgg      7920
     gcatcacctc cacccccttc ggcctccacg tactcttctt cgcgaagctc cgccgcctca      7980
     gccttcgcca gctgctccaa aaggcgcgcc ttagcggtcg agcggccgtc cctctgctag      8040
     aattgttttc gccacgcacg aagtgcgggc gaaatgtctt gtgaactgat ttcccaatcc      8100
     cctttcgcgt agttggggaa ctcggcgaca tgctcacagc cgaactgctg taggaggccc      8160
     gtggtaaagg ccgcggacac gcgcgcacag cagtcgccgt acgcggtggc acagtccgaa      8220
     accgaaccac cagcctgcta ggtccattcg gagaagtcaa aggcagaggc atcttcggaa      8280
     gggacacctc gcactttcgc gcccatatcg gtaagagcaa ggcgaagcgt ttggcaagct      8340
     gttcgcgcgg actcggtagt tttcaccatc tcccgtgaaa accgccgcga ctccgcagca      8400
     gcgcttgcct cggccttgca gacttcctgc cgaagagcct ccatcttcga ctcggtaagg      8460
     ttgtagtaat ccacaagcac ggcggagtgg gccttttctt tttgcagttc ggccttcaag      8520
     cgttcgactt cggccctagc ttcattccct ttttccagtt ccaactggag ccgcttgttt      8580
     tcggctttcg tctccttcag ggtgttagcc aggacctcca tctcaagatt tttgcggcct      8640
     atttcgtcat ccttcgcccg aagacggctt ttgaacccgt caaggcgggc tcgcacggtt      8700
     cgctctgttg aacagtgagc cgcaaggatc tgggcgcaaa acaagagcgg cgaagagagc      8760
     aagtgtcagc aaaagcaaag ataagaacag agaaaaagga ggggaaagac gtacccgaac      8820
     cacaagactt tttatagcgg agcacccctc attgaactca ttaagttcgg tgaacaggct      8880
     cggggtgccg gcaggcatga ttagattgct caccccttcc acaaaaggaa ggaggtctgc      8940
     ccgtgtctcg aagtcgccgg gggcgaagcg gggcaccgca agcgaatact ctgacgcgga      9000
     cgtttcgcca gccgctctct ttcccttcgc ctcagtcagc ggcgatgcaa ttggctgacg      9060
     aggaggactg ccgaaaactt tcgccgcggc cgtcacgatc ctttccgcgg aggccgaagc      9120
     cccagcggca gtgctaccac ccgctccagt gccgccaagt ggaggagcgg gagcggctga      9180
     gagatccagg ctgcggccag cgggcgaagt cagagtcccg tcagaggact catcgtcgct      9240
     aaaaactcga gcgatatcga caagtccttt ctttttagcc gccttcttga cggggcctcc      9300
     cttcgccgcc ttgccagagg agaacgcaac cagagccttc gccacgtcca agtctttttg      9360
     gcgaaggggg gagctattcg actccacccc agtctcgtta tggccaggac ttggagtggg      9420
     ggtataaccg ggagtttcgg cgcgtccctc ggtcacctcg accgcggcat tttcgaccgc      9480
     ggtctccgtc tcttcttcct ccccctctcc ctcttcgccg tcaagttctt cgccatcctt      9540
     gtcgtcagcg tcagaatctg atgaaacagg agccctacgc ttcctagggg caagcttaac      9600
     ctgaccgcgc ggccgcttcc gcgaaggccc tgcttcgtca ccagccttat ggggattcgc      9660
     ccgaggaggc aattcgccgt taaaaacccg gttcgcccga ccagttgcct gccgtgtaag      9720
     catttggctg tactcaacga ccgatacgtc gccgatcatc ttacgggctt cggcttcggc      9780
     ttggtcaagg gttagcactg caaaggaaag gaaaggagtc aggttaaaag gtcaagcaga      9840
     gagagctaaa gcgcgaaagt atatggcgaa aacagcagac ttactgttca ttccctcagg      9900
     gaggaccagc ttaggcaagc catcaacctc ttcgctcagg ttaaccgcaa cctgccatga      9960
     ctgggagagg ggaaagatgc gaagcatgca gaactcctcc accaggtcgc ggcagctgag     10020
     gcgggaacag actttcctta gcagggcgaa ccgggcctcc atagcgccat ccacggcgat     10080
     cctgggtttt cgattcggcg caataaccct gcgccgacac cgaagagctt tcgctgaatc     10140
     agagccggcc tcgaagggga tggtgtggta aaaccacctc gccatccaat ggcggtccca     10200
     cttcgacatg gcagcattcg ctggccaaag gtcggaccgt tcggggcgaa cattgaagtt     10260
     cacgctcccg atcaccgtct tcttcgtccc agccggagta atcaccgtct tggagttcac     10320
     ggtggcgaag aatatggcgc cgaagagagc agcgctaggt tcgaacccag aagtccgaca     10380
     agcccaatcg aaaattgaga tccgaaccag cgtcgatggg ctcaattggg ggagctctac     10440
     ctggaagagg cgaaggatct ccggcaatag cacgttgcac ggaaaccgta gccctgcctc     10500
     aaaaaagacg gcgaaaacca ccgtccgatt gtccacaggc ttcggcacca cagctttccc     10560
     cggggcgaaa gcctgccccg caatcaacgc cccagagctg actagtttcg ccagctcgtc     10620
     gtcatccaca agggaggccc ccaaaaaggt ggtgttatcg tcgtcgaccc ggccagggtc     10680
     cggtccgacc gcctgaacgg ggtttggttt gcgaggggcc atggcgaaag gcgtgtgggc     10740
     cgtggcgaac caatagggta ggcgaaacac ctacggattc aagaaacgct gtggaaggag     10800
     ataacgaagg aggagagcgc acgcagtaaa agtggcaaag tgtgacggtg aaagggaaag     10860
     gggtgagaat atatagccca ccgagtcgac gtttcgcata ccctccaatc acaaagagcc     10920
     acgtggcgcg agggtaggcg taacggtaaa atcccatcat ccgaccagca cagtaaaaag     10980
     cccattaagg gaaagcccaa tactgttcac ttcggcccgg aaaaagtaat gatattttat     11040
     ttgcaggaac agtacgggtt tcggcaggag catcgatcga aagggggcgc cacataccat     11100
     accacatggt ttgcacggtc tcggccgaag ctccgctctc acccttgccc gcgaggggct     11160
     tgttggcgga tggcatgagt cccttcgacc gaatctgccg aaacccatgg cgaaaaccac     11220
     gagccaagga tgatgcgagg cgaagggtcg cacgagtgca cgccgaagaa ggacgacttc     11280
     gccatgccga agaaggacaa cttcgccagg accggttcgc cccggcatcc agcccagaga     11340
     aggacagctt cgccaggtcc agttcgcccc cgcgagggcc aaagtagcct tctcggccca     11400
     ccaagcatag aggccatagg gccggcgatc gcccgatggc ccatcaaggg cccatgagcc     11460
     cccctttacg ttatgtaacc ctgtaaacgt ccctttcata agggcaacta tgtaaattcc     11520
     tcagtacaac ctagacccta gaagtgagaa tctgtaacgg ggctataaat agccccctag     11580
     ggccatgtaa tacaggggag aaaattcaag aaatcaatat acttcgtttc tttccaacca     11640
     ctgttaagta accacgtctt tcgacgtatg cggttgtcgt ttcgacaaca                11690
//
ID   CRM-I_OS    repbase; DNA   ; ORY   ; 5933 BP.
XX
AC   .
XX
DT   16-MAY-2005 (Rel. 10.05, Created)
DT   28-FEB-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Rice centromeric LTR retrotranposon, internal sequence consensus.
XX
KW   LTR Retrotransposon; Interspersed Repeat; internal sequence;
KW   integrase domain; reverse transcriptase; pol domain; CRM-I_OS.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5933
RA   Gentles A., Jurka J.;
RT   "Rice centromeric LTR retrotransposon.";
RL   Direct Submission to Repbase Update (16-MAY-2005).
XX
CC   [1] (Consensus)
XX
CC   There are about 15 nearly complete copies in the rice genome,
CC   that are more than 97% similar to the consensus, indicating
CC   relatively recent activity of this retrotransposon. Generates
CC   5 bp TSDs. It is 83% similar to the maize (Zea mays)
CC   centromeric retrotransposon CRM_INT. The 908 bp LTRs are
CC   deposited as CRM-LTR_OS.
XX
FH   Key           Location/Qualifiers
FT   CDS           1256..5839
FT                 /product="CRM_1p"
FT                 /translation="MAGPEDKDEEGASHSPRTKGIIQYFTRQVKQHTEGLD
FT                 TDLQVTNEKIGQLESTQISTNTKLTGLETAVARIDTSLAALVRHFDALNAG
FT                 GNGGGNDDDIDGEYVEDNLEDEYIADTEQDDRDARDRRRLHNNRRGMGGRR
FT                 RREVRNNDDAFSKIKFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPENTR
FT                 VRAATSEFTDFASVWWIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDL
FT                 LNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMARFLGGLNREIYD
FT                 IVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTPPA
FT                 GRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHR
FT                 CKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEE
FT                 HIGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIID
FT                 GGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIG
FT                 NYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLH
FT                 PMSPEDILRDDVAKAAKSKCESDKKAQSDGKKPETINLKPKCLLATKSDIN
FT                 ELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGL
FT                 PPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESL
FT                 SPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSI
FT                 VFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMR
FT                 LMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNL
FT                 EKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLA
FT                 GFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQ
FT                 LPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKEL
FT                 YALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESF
FT                 PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDV
FT                 LLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG
FT                 AKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPT
FT                 VPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIAD
FT                 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTD
FT                 GQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQI
FT                 VYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYK
FT                 FAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINE
FT                 NAYKIDLPADFG"
XX
SQ   Sequence 5933 BP; 1588 A; 1198 C; 1391 G; 1756 T; 0 other;
     ggtggtatca gagcgtggtt catcggtgag agaatttacc cttcccttcg tcattaattt        60
     ttttttccta tagtccagaa aagaccaaca aaaaaaatag tagattagtt ttcccgtgat       120
     cctatagacc attgtgcctt tttactagta ctgcttagtt aaggcttgtt gagttttcga       180
     ttgcatcggt tgtgttaatt tgctggtctt agtgttaggc gattagagtt tcgagttctt       240
     gccaccaccg cacatcgcca ccttcatcaa ttttgccgtc atcaccaccg tcaccaccgt       300
     cgcagtcacc caccaaatca ctttctattt gtgtttgatc tgttgccgat agcttttgtg       360
     agttgccttg tatcctgccg ccactagaaa ggaaatagaa ccctgattcg agtgaccttc       420
     cttaaaacag tcatatcttt ttcatacgga ctcgaaatta ggcttataat atatccacgg       480
     acatctacaa aaaaagttac atccgattct ccccgctttg ccgggttcgg caaatttaaa       540
     atcgccaaat tcctcttgca aaattctgtt tttgtggcga gaagcttcgg gacctattcg       600
     catagaactt taaaaaaatt ctacaagctt catactttgt ccgtttgaga taagattttc       660
     tgtggttggt tctagtgtgc tcctggttgt gaaaaaaata tcaaaaaaaa aaaaaaaaag       720
     ttgtgcctct ctcctcagca ctagagagag caagcaaaaa aaaaaaaaaa aagaggatcc       780
     agcgagcaca ccccaccatt ccccctttgt caccaccttc caccaccggt tcttgttttc       840
     gttgctgttt gggtttgtgt tttgtggcgt cctttgtggt taggctcgcg tctctacttc       900
     gactagccta ggaccagcac tgtacactat acccttgagc gattattcaa tttgctttgg       960
     ctaacgtggt ttctagtttt ctcttgagca ttgctttcag cccaccaaca gctccaccac      1020
     aaacccgact acagcttgac aggtcttgtt gctacagcac cgatacacct cgttccacgg      1080
     ttgctaactt gtgggttgct gtccccctcc tgtgggcaag gtaagaactg gtaagagctt      1140
     gtgagacaag ctgcgagtga agtgagagtg agcgtcttgc aaaagctaca tcccaatagt      1200
     tgtgtagggc ttacattaca tcctccattg ttttgttgtc cttcatttct aaaccatggc      1260
     aggtccagag gataaagatg aggagggtgc atctcattcc ccacgcacca aaggcatcat      1320
     ccaatacttt acaaggcaag tgaagcagca cacagaagga cttgatacag atttgcaggt      1380
     gacaaatgag aagattggac aattggagtc cacgcagatc tccaccaaca ctaagcttac      1440
     agggctggag acagcggtcg cccgcattga cactagcctt gctgctcttg tgaggcattt      1500
     tgatgctctc aatgctggag gcaatggtgg gggtaatgac gatgacattg acggagagta      1560
     cgtcgaggat aatttggagg atgaatatat tgctgacact gaacaagatg atcgagatgc      1620
     tcgagatcgt cgacggctac acaacaatcg acgaggtatg ggtggtcgcc gccgacgcga      1680
     ggtacgcaac aatgatgatg ctttttctaa aattaaattt aagattcctc cttttgatgg      1740
     aaaatatgat cctgatgcgt acctctcttg ggagattgct gttgaccaaa aatttgcatg      1800
     ccatgagttt cctgagaaca ctagagttag agctgctacg agtgagttca ccgattttgc      1860
     ttcggtttgg tggatagaac atggcaagaa aaatcctaat aacatgccac aaacttggga      1920
     tgctttgaaa cgggtcatgc gggctagatt tgttccttct tactatgcac gtgacttgct      1980
     gaataggttg caacaattga gacagggtgc gaaaagtgta gaggaatatt atcaggagtt      2040
     acaaatgggc ttgcttcgtt gtaatttaga ggaaactgag gacgctgcca tggctagatt      2100
     tttgggtggg ttaaaccgcg agatttatga catcgtagac tataaagatt acactaatat      2160
     gacccgattg tttcatcttg cttgtaaggc tgaaagggaa gtgcagggac gacgtgctag      2220
     tgccaaggct aatttttctg caggtaaaac ttcatcatgg cagacacgca ccactcctcc      2280
     ggccggccgt actgcttctc catcttccac acccacaacc agtcgagcag cacctcctcc      2340
     atctagtgac aagtcagcga caaaggctgc tcagccagca ccgagtgctt cttcaatggc      2400
     atccacaggc cgaatgagag atgttcagtg ccaccgttgc aagggctttg ggcatgtgca      2460
     gcgtgactgc cctagcaagc gagttttggt agtcaaaaac gatggtgagt actcctctgc      2520
     tagtgatttc gatgatgata cacttgcttt gcttgcggct gaccatgcag ataatgagcc      2580
     accggaagag cacattgggg ctgcatttgc ggatcactat gagagcctca ttgtgcagcg      2640
     tgtccttagc gcacaaatgg agaaggcgga gcaaaatcag cgacacacgt tgttccaaac      2700
     aaagtgtgtc gtcaaagagc gttgttgccg catgatcatt gatggaggta gctgcaacaa      2760
     cttggctagc agcgagatgg tggagaagct tgcacttagc accaaaccgc acccacatcc      2820
     atactacatc caatggctga acaacagtgg taaggcgaag gtaacaaaac tggtgcacat      2880
     taattttgca attggaaatt accatgatgt tgttgaatgt gatgttgtgc ccatgcaagc      2940
     atgtaatatt ctgctaggta gaccatggca atttgatagg gattctatgc atcatggtag      3000
     gtccaaccag tactcttttc tgtaccatga taagaaaatt gtgttgcatc ccatgtctcc      3060
     tgaagatatt ttgcgtgatg atgttgctaa ggctgccaaa tccaaatgtg agagtgataa      3120
     aaaagcccaa tctgatggca agaaacctga gacaatcaat ttgaaaccca aatgcttact      3180
     tgctactaaa tctgatatta atgagttgat tgcatcacct tcagttgcct atgctttggt      3240
     atgcaaagat gctttgattt cacttcacga tatgcagcat tctttgcccc ctgctgttgc      3300
     taacattttg caggagtact ctgatgtgtt tcccaaggaa gtgccaccgg ggctgccacc      3360
     ggtgcgcggc attgagcatc aaatcgactt gatcccaggt gcttccctac cgaaccgtgc      3420
     gccataccga accaaccctg aggaaaccaa ggagattcag cgtcaagttc atgagttgct      3480
     tgataaaggg tatgtacgcg agtctcttag tccatgtgcg gttccggtaa ttttggtacc      3540
     aaagaaagat ggttcatggc gtatgtgtgt tgattgtaga gctattaata acattaccat      3600
     tcgatatcgt catcctattc ctaggttaga tgatatgctt gatgaattga gtggctctat      3660
     tgtgttctcc aaagttgatt tgcgtagtgg ttaccaccag attcgtatga agttgggtga      3720
     tgaatggaaa acagcattta aaacgaagtt tgggttgtat gagtggttag tgatgccttt      3780
     tggtttaact aatgcaccca gcactttcat gaggttgatg aatgaggttt tgcgtccttt      3840
     cattggaaaa tttgtggtgg tctactttga tgatatcttg atttacagca agtctatggg      3900
     tgaacatttt aatcatttac gtgctgtttt taatgctctt cgtgatgcac gtttatttgg      3960
     taaccttgag aagtgcacct tttgcacaga tcgagtttct tttcttggct atgttgtaac      4020
     tccgcagggg attgaggttg atcaagccaa ggttgaggca attcagagtt ggccgactcc      4080
     taaaacggtc tcacaagtgc ggagctttct aggactcgcg gggttctatc gccgctttgt      4140
     gcaggatttc agcaccattg ctgcaccatt gaatgcgctt acaaagaagg gagtgccttt      4200
     cacttggggc acatcacaag agaacgcctt ccacatgttg aaagataagt tgacccatgc      4260
     acctctcctc caacttcccg attttaataa gacttttgaa cttgaatgtg atgctagtgg      4320
     gattggattg ggtggtgttt tgctacaaga aggaaaacct gttgcatatt ttagtgaaaa      4380
     gttgagtggg cctgttctga attattctac ttatgataag gaattgtatg ctcttgtgcg      4440
     aactttagaa acatggcagc attatttgtg gcccaaggaa tttgtcatac attctgatca      4500
     tgagtctttg aagcatattc gtagtcaagg gaagctgaac cgtagacatg ctaaatgggt      4560
     tgaatttatt gaatcttttc cttatgttat caaacacaag aaagggaagg agaacatcat      4620
     tgctgatgct ttgtctagga gatacacttt gttgacacaa cttgactaca agatttttgg      4680
     cctggaaaca atcaaagacc aatatgcgca tgatgctgat tttaatgatg tgttgctgca      4740
     ttgtaaggat ggaagaacat ggaacaaatt cgtcatcaat gatgggtttg ttttcagagc      4800
     taacaagcta tgcattccag ctagctccgt tcgcttgttg ttgttgcagg aagcgcatgg      4860
     aggcggtttg atgggacatt ttggtgccaa gaagacacat gacatccttg ctagtcattt      4920
     cttttggcca cagatgcgaa gagatgttgg caggttcgtt gctcgctgcg ctacatgtca      4980
     aaaggctaag tcacgcttac atccacatgg tttgtatatg cctcttcctg ttcctactgt      5040
     tccttgggaa gatatttcaa tggattttgt gttaggattg cctaggacca agagggggcg      5100
     tgatagcatt tttgtggttg tggatagatt ttctaaaatg gcacatttca taccatgtca      5160
     taaaactgat gatgcttctc atatcgctga tttgttcttt cgagaaattg ttcgcttgca      5220
     tggtgtgcca aacacaattg tttctgatcg tgacacaaaa tttcttagcc atttttggag      5280
     aactttgtgg gctaaattgg ggactaaact tttgttttct actacttgtc atccccaaac      5340
     tgatggacaa actgaagtgg tgaatagaac cttgtctact atgcttaggg ctgttttgaa      5400
     gaaaaatatc aagatgtggg aagaatgctt gcctcatatt gaatttgctt ataatcgttc      5460
     cttgcattct actacaaaaa tgtgcccatt tcagattgtg tatggtttgt tgcctcgtgc      5520
     tccaattgat ttgatgcctt taccatcttc tgaaaaactg aattttgatg ctaagcaacg      5580
     tgctgagttg atgttaaaac tgcatgagac aactaaagaa aacatagagc gcatgaatgc      5640
     taagtataag tttgctggtg acaaaggtag aagggaattg aattttgaac ctggagattt      5700
     ggtttggttg catttgcgaa aagaacgatt tcctgatttg agaaagtcta aattgatgcc      5760
     tagagctgat ggaccattta aagtgttagc aaagattaat gagaatgcat ataagattga      5820
     tttgcctgca gatttcgggg ttagtcccac atttaacgtt gcagatttga agccgtattt      5880
     gggagaagaa gatgagcttg agtcgaggac gactcaaatg caagaagggg agg             5933
//
ID   RIRE3_I     repbase; DNA   ; ORY   ; 5775 BP.
XX
AC   AB014738;
XX
DT   02-JUN-2000 (Rel. 4, Created)
DT   02-JUN-2000 (Rel. 4, Last updated, Version 1)
XX
DE   Gypsy-type LTR retrotransposon RIRE3 DNA, internal region,
DE   complete sequence.
XX
KW   LTR retrotransposon; GYPSY superfamily; retrovirus; polyprotein;
KW   RIRE3; RIRE3_I.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5775
RA   Ohtsubo E.;
RT   "Direct Submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (22-MAY-1998). Eiichi
RL   Ohtsubo, The University of Tokyo, Institute of Molecular and
RL   Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-0032,
RL   Japan (E-mail:eohtsubo@ims.u-tokyo.ac.jp, Tel:+81-3-5684-3269,
RL   Fax:+81-3-5684-3269).
XX
DR   GenBank; AB014738; Positions       1    5775.
XX
SQ   Sequence 5775 BP; 1402 A; 1522 C; 1524 G; 1327 T; 0 other;
     gttggtatca gagccccctt gaccctagga cgagctgtag atccgaagcc ttagcagtat        60
     tttcgaaata aaaatccttt gttatttgtg aaaaccctct agtctctctc tgtcttgctg       120
     cttcatttat cgtcaaaatc tgacctttaa aatgttgttt ttcttttttg tttttgtttg       180
     tagatggccg gcagcgtcac ccgtcgtggt ttggacatga ctggcttcgt cttggagctg       240
     cggggcatgt gcgttgtcct ggggtatcca catggagtgg actaccaggc caggccgctt       300
     ccggagcagg agggtgacga tgcagagccc cacgctgctt gggaggtcac tgcagtgatc       360
     ctctctggct ctcccgagcg gacttcgctg gcagtcaccg cgggtgggga ttccttcccc       420
     gccgcttgcc agagcgccgc tctcctcgcc atcggcaccc ttcactagcg ctacccggac       480
     gagttgcagc actcgcccta ccgctaccac catcgccgcg gaggagcccg cgactacgcc       540
     accttccggg atgctagctc ggaagatgac gttaccatcg tgcacctggc gcgcatggtg       600
     gaggcgtatg acgcggctcg tatcgacttc catcaaatgg tgcgccgtgg gatggttgaa       660
     aacaacttga aaatcctgga gctgcgtcag gagaacctgc agctcaagaa ggacttaaac       720
     gcggtggagg cgcagctgca tcagctcaag atcgcccagg gagaggacag ccgtcccaag       780
     cgtcgccgcg tcttccgcag ccagaagatc accgcccgca agagcacctc caggcccgag       840
     cttgttcgtc agtccctggc gtggacctgc ttcgtcgaga cccctcgtgc cgagcccgcg       900
     cccgtggttc cccaggaggg ggaagcatcc ggcgttggta gcacggagga tgcgctgttg       960
     ctcaccttcc gtcctggccc gtcgcagcag tagacgagca gttagtaggc tcgcgcgtgt      1020
     gttctttctc gtttatcttc ttgttgagtc gtgtggggca tggttatgcc ggtgtgtggt      1080
     ataactgtgt cggagcctgt cttattttat ttgcctaagc aacttgaact ctaatgaacc      1140
     aatttaatag cagtaataaa ttcaagaatt atggtagtcg tgggtggtta gttttaatag      1200
     ttagctcttt ctgtttgctg gatccgtgtg gggtttacag atggtgacaa ccaggagaac      1260
     tgctaatacc ggtgatggca accaacccga aggcagcaac atcaacaacc atggcagccc      1320
     acctccacct ccgcctcctc caccaccccc agacaccaac gccattctca ctcaaatcct      1380
     cgcccagcaa gccaacatga tggctgcttt cctccaccac atccaaaatc caccacggca      1440
     taatgctcca cctccaccac cacccccgca acactctgag ctcgccgagt tccttcgcat      1500
     tcgcccgcct accttctcca gctccaataa ccccgtggat gccttggatt ggttgcatgc      1560
     agtggggaag aagttagaca ctgtgcagtg caacgataag gagaaagtca tctttgccac      1620
     ccaccagctg caggggcccg catctctatg gtgggactac ttccaggcta cgcagcccga      1680
     ggggcagcct atcacctggg cccgtttcac cgccgctttc cggagaaccc atgtgcccgc      1740
     cggagtcgtg gctcttaaga agagggagtt ccgagagttg aagcaaggca accgctccgt      1800
     gatggagtat ttgcacgagt tcaacaatct ggcccggtac gctccggagg atgtgcggga      1860
     agatgaggag aagcaagaga agttcttggc gggaatggac cctgagctgt ccgttggtct      1920
     agtctctggg gactatccgg atttccaacg tctggtggac aagagcatcc gcttggaagc      1980
     caagcacaag gagctggagt cgcacaagcg ccgcttggcg aacttccgca atcagcaggg      2040
     tgctaaccag agggtccgct acaccaatcc ctatccaggg ggatcctcct cgcagcagca      2100
     acaacaacag cagcagcaat cccgccctgc gcctcgacct caattcgtgg tgcgcgtccc      2160
     acagccgcag cagcagcaga atcagcaagg gactcgtgcg ccccgtcctc ctacgccagc      2220
     tgtgcagccc gttcaaggcc gcagggacgc ttcaggtccg cagcgtctgt gcttcaactg      2280
     cttcgagccc gggcactttg cggataaatg cccgaagccg aggcggcagc aaggccaagc      2340
     gcctccccgc cccaacaacg gcgggaagga tgtcattcgg ggccgtgtga atcacgtgac      2400
     ggccgaggac gtgctgacaa ctccagactt catcgttggt acgttcctcg ttcattccat      2460
     ccctgctacc attttgttcg actctggagc ttcccactcg ttcatatcta tgccattcgt      2520
     ggggaaaaac cagttggggg tagaaaggct tagaaaccct ctgctcatca ccacccctgg      2580
     aggggttatg acagcaaagt attatagtcc tgccgtccct atagaaatcc aggggattcc      2640
     ttttccctcg gatctgattc tgctagacac caagaacttg gatgtgatcc ttgggatgaa      2700
     ttggttggct caattccaag gagtagtgga ttgcgcgaga cgcactgtca ctctgtaccg      2760
     agggccggaa caaccggttg ttttctttgc acccccaacc tctgtcagaa gttcagaact      2820
     gcattagata ggactgtcag aaatccccat tgtcagagag ttcggagacg tgtttccgga      2880
     agaactacct ggtatgccgc cccagcgaga gattgagttc cggatagatc ttgctccagg      2940
     aaccactcct ctgtacaagc gaccctaccg tatggcagca aatgaactgg ccgaagtcaa      3000
     gaaacagttg gaagagttga aagaaaaggg gtatatacgt ccgagtactt ccccatgggg      3060
     tgctcctgtg atttttgtag agaagaaaga caagacgaag aggatgtgcg ttgactacag      3120
     agctctcaat gaagtcacta tcaaaaacaa gtaccctctt ccccggatcg atgatctgtt      3180
     cgatcagctt aaaggtgcca ctgtattctc caagattgat cttcgttccg gatatcacca      3240
     gttgcgcatc cgggaagaag atattccgaa gaccgcattc accacgcgat acgggctgta      3300
     tgaattcacg gtgatgtcgt tcggtctaac caatgctcct gcatttttca tgaacttgat      3360
     gaacaaagtg ttcatggaat acttggataa gttcgttgtg gttttcatcg atgacattct      3420
     gatatactca caatcagagg aagaccatca gcaccatctc cgtctggtgt tgggaaagtt      3480
     gcgggaacat caattgtatg ccaaacttag caagtgtgag ttctggttgt ccgaagtcaa      3540
     attcttaggg cacgtgatat ctgctaaagg agttgcggtg gaccccgaaa cagtgaccgc      3600
     cgtcactgat tggaagcaac ccaagacagt cactcaagtc cgcagtttct taggtttggc      3660
     aggatactac cgaagttgta tcgagaactt ctccaaaatc gctcgaccca tgacacagtt      3720
     gttgaagaaa gaagagaaat ttgtgtggag cccgcaatgc gagaaggcgt tcaaaaccct      3780
     caaagaaaag ctggtttcct cgccagtgtt aatcttgccg gatactcgca aggatttcat      3840
     ggtgtattgt gacgcttcgc gccaaggatt ggggtgcgtg ctcatgcagg atggtcatgt      3900
     ggtggcctat gcctcacgcc agctacggcc tcatgaaggc aactacccta cccatgattt      3960
     ggagttagct gcggtggttc atgctcttaa gatcaagcgg cactatctca ttgggaatcg      4020
     ctgtgaaata tatattaatc ataagttttt gaaatacatc ttcactcagt cggatctgaa      4080
     tcttcggcag agaagatggt tagaactcat caaggattat aatgtgggaa tccactatca      4140
     tcctggtaag gccaacgtgg ttgccgacgc tctaagtcga aagagccact gcaacactct      4200
     caacgtccga ggcattccac ccgagcttaa tcaacagatg gaagccctga acctaagcat      4260
     agttggtcac ggattcttgg ctgcgttgga agccaagccc accttgctcg atcaaatccg      4320
     cgaggctcag aagaatgatc cggacatgca tggactcatc aagaatatga aacagggtaa      4380
     agctgctggt ttcacagagg atgaacacgg aaccttatgg aacggaaagc gagtatgcgt      4440
     tcccgataac agagaactta aacaactgat acttcaggaa gctcacgaaa gtccttattc      4500
     cattcacccg ggcagtacca agatgtactt agacttgaag gagaaatact ggtgggtcag      4560
     catgaagcgg gaaattgcag agttcgtggc tctttgtgat gtgtgccagc gtgtcaaggc      4620
     agagcaccaa cgaccggccg gacttctcca acctctccaa gtgccggaat ggaaatggga      4680
     tgaaattggg atggatttca tcaccggcct tccaaaaacc caaggtggat atgattctat      4740
     atgggtagtc gtggatcgat taaccaaggt ggctcgattt attccggtga agaccaccta      4800
     tggagggaac aaactagcgg aactctactt cgctaggatc gtgagtctcc atggcgttcc      4860
     caagaaaatc gtatctgata aggggagcca attcacctct cacttttgga agaagctcca      4920
     agaagagctt ggtactcggt tgaatttcag caccggttac cacccgcaga cagatggaca      4980
     gaccgagcgt ctaaatcaaa tcctagaaga tatcgttcgc gcatgtgtcc tagatttcgg      5040
     gaagacctgg gataagagtc tcccctatgc cgagttctcc tacaataaca gttatcaagc      5100
     cagcatacaa atggcacctt atgaagcgtt gtacgggcgc aaatgtcgga caccgctatt      5160
     gtgggatcaa gtcggagaaa gccaagtgtt cgggactgac atcctgagag aagctgaagc      5220
     taaagtcaga atcattcggg ataatctaaa ggtggcacag tctcggcaga aaggctatgc      5280
     agacaaccgt cgccgtgact tggaattcgc agtggatgat tttgtgtatc tccgggtaac      5340
     accattgcga ggggtacacc ggtttcagac gaaaggaaac tcgcacctcg gtatgtgggt      5400
     cctttccgta tcgttgctcg acgcggagaa gtcgcttacc aattggagct gcccgcctcc      5460
     ttgggcaacg tgcatgatgt gttccatgtg tcgcaactca agaaatgcct tcgagtgcca      5520
     tccgagcagg ccgactcaga gcaaattgaa gttcgcgaag atttgaccta cgtggagagg      5580
     ccagtgaaaa tcctggacac catggagcgc aggaccagga accggataat ccgtttttgc      5640
     aaggtccagt ggagcaacca cgccgaagaa gaagctactt gggagcgcga agacgagctg      5700
     aagacagccc atcccgatct cttcgccagt tcttccgaat ctcggggtcg agattccgtt      5760
     taaggggggt aggtt                                                       5775
//
ID   SZ-54       repbase; DNA   ; ORY   ; 5202 BP.
XX
AC   .
XX
DT   16-AUG-2004 (Rel. 9.07, Created)
DT   16-AUG-2004 (Rel. 9.07, Last updated, Version 2)
XX
DE   Rice retrotransposon SZ-54.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; LRT retrotransposon;
KW   SZ-53; SZ-54.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5202
RA   Jiang N., Wessler R.S.;
RT   "SZ-54: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 108-108 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-54 has 391bp LTRs. Internal region is related to SZ-53.
XX
SQ   Sequence 5202 BP; 915 A; 1799 C; 1517 G; 971 T; 0 other;
     tgtcatgtgg ggcacggcct atacacggcg tcgccgggcg cgagatgtgc ggagagctgc        60
     ggagcgagcc gcagcgcgtg tcgcggcgca gagcgcgatc accatgaccg tggatggcaa       120
     ggacgggctc agtggctagg atcggagtag ccttgattct aggagggttt gtttccaagt       180
     tgttagcgtt tatttccaag ttagttagcc ggagggctat atactcttgt accgaaacat       240
     ttgagaggaa agcatgaaag ttatcgtcta atctccctct tattctgtta agccactagc       300
     tgaggggtat aacctcgcag gtgaggactg gagcgcgact acgagttacg tagtcgcggc       360
     ccgccgtcgt tgagcgccca ggcgcttgac aacctggtat cgggatctcg tcgatcctcg       420
     gcgtccgccg ccgccgcgcc tttccctacc accgccgcac ccgcgtctcc cgaccccgca       480
     cccatcaacc ctagtccacc acccatcact gccaacacca gtccaccttc cccgtcatcc       540
     tcgtcatccg tcgcctccaa ctccggtgac atgggtgaca acggcgacct caaggccgcg       600
     atcgacgccc tcaccaagaa cgtcgccgcc atgcagtcgt ctatccaggc caacgccaag       660
     gcgatcgaga acatcaccgc atcatcctca ggctccggcc cacggcacca ctccggcgag       720
     caacccccag atcgcccccc caagcattgg cgcccggaga tgccgcgcta cgatggcaag       780
     actgatcctc tcaccttcat caacaagtgc gaatcctttt tcttgcagca gcggattatg       840
     ccggaggagc gcgtctggat ggcttcgtac aacctccacg acgacgccca gctgtggttc       900
     atgcaaattc aggaggatga gggcactccg acatggccat gcttcaagga cctcatcaat       960
     ctgcggttcg ggccaccgct ccgctcgact ccgctcttcg agctctcggc ctgccgccgg      1020
     accgggacgg tcgcggagta ctcgtcgcag tggcaggcgc tgctgccccg cgcgggcaaa      1080
     ctggaggagg cccagaagat ccagctctac accggcgggc tcctgccacc gcttagcctc      1140
     caagtccaga tgcagaaccc ccagtccgtg gcgtccgcca tgagtctggc acggcagttc      1200
     aagctcatgg ccgaatacac gaccgcgccg gccaaggctc cgggccgcgg cgtcctgggc      1260
     gccccacaag cgcgtccggc tctgccggca cccccgccgc accctgacaa gacaccggcg      1320
     gtcaccaacc agggcgaggg ccgccaggcg aagcgcctca ccaaggagga acaggcggaa      1380
     cgccgccgcc ttggcctctg ctacaactgc aacgagagct acacccgggg gcacaaccgt      1440
     gtttgccggc gcatcttcca cattgccggg gtggagctcg acgacgacgc cgccgccgac      1500
     gctcatgagg agccgaccac ggaatcgccg gtcttctccc tgcacgcggt ggccggcgta      1560
     ccgcgcggcg ggacgctgca gatcgcagtc accatcggcg gtgcgccact cgtcgccctc      1620
     ctcgacagtg ggtcgaccca caacttcatc tctgccagcg ccgcgccacg cacgaggctt      1680
     ccggtggagt ccagaccgcg gctcacggcg gtcgtcgcca acggcgagcg cgtcgcgtgt      1740
     ccgggcgtca tccgcgccgc gccagtcgtc atcgacggca ccaacttcga catcgacttg      1800
     tttgtaatgc ctcttgcagg gtacgatttg gtgctgggca cccagtggat ggccaccctt      1860
     ggcgagatag tctgggactt cgccacgccg tctatggcgt tccacctcca cgggcacgcc      1920
     ttccgctgga ccggggtgac gtctgctgct gcaccatcgc tcctctctac ggtggccagc      1980
     gcgtccctcc tcgacgagct gctggcgtcg ttcgcggacg tcttcgccga acccgtgggc      2040
     ctaccacccc cccgcggccg cgatcacggc atagtcctca agccggacgc ggcgccggtg      2100
     gccgtccgac cataccggta cccggcggcc cacaaggacg agctggagcg gcaatgtgcc      2160
     gccatgatcc accagggcat cgttcgccgc agcgactccg cgttctcatc gccggtcctc      2220
     ctcgtcaaga aagccgacgg cacctggcgc ttctgcgttg actaccgcgc cctgaacgcc      2280
     ctcaccgtca aggacgcgtt ccccatcccc gtcgtcgacg agctcctgga cgagcttcat      2340
     ggggcgcgct tcttcaccaa gctcgacctt cggtcggggt accaccaggt gcggatgcga      2400
     ccggaggaca tccacaagac ggcgttccgc acccatgacg gcctctatga gttcctggtc      2460
     atgccgtttg ggttgtgcaa cgccccggca accttccagg cgctcatgaa cgacgtcctc      2520
     cgcgatcacc tccgccggtt tgtacttgtc ttcttcgatg acatattgat ttacagcaat      2580
     acttgggccg atcaccttcg ccacctccgc gtcgtcctca ccatcctgcg ccagcatcgc      2640
     ctgttcgtga agaagaccaa gtgctcgttc ggagtcaact ccgtcgggta cctgggccac      2700
     accatctcgg cgtcgggtgt ggcattggac cccgctaagg tccaggccat ccacgagtgg      2760
     ccacagcccc gctccgcgcg tgccgtgcgc ggcttcctcg gcctggcggg ctattaccgg      2820
     aagttcgtcc acaacttcgg ctccatcgcc gctcccctca ccgcgctcct gaagaaggac      2880
     gggttcacat ggactgccga cgccgcggca gccttcctcg ccctcaagga ggccgtgacg      2940
     accgcgcctg tgctggcgct cccggacttc gccaagccct tcatcgtgga atgtgacgcg      3000
     tccacgtatg gcttcggggc ggtcctcatc caggacggcc acccgatcgc gttcttcagt      3060
     cggccggtgg cgccccgcca tcgctccttg gcagcctatg agcgcgagct cattggtctc      3120
     gttctcgccg tccgccactg gcggccatac ttgtgggggc gccgcttcta cgtcaagacg      3180
     gaccactaca gcctaaaata cctcctcgac cagcgcctcg ccacgattcc ccagcaccac      3240
     tgggtgggca agctgctggg atttgatttc accgtggagt acaagtccgg cgcgacgaac      3300
     acggtggctg acgccctgtc ccgccgggac accgaggagg cttccctgag cacgatcatg      3360
     gcggtctcgg gaccccgctt cgacttcatc gaccgcctcc gccaagctca agccagggac      3420
     ccggctctgg tggcgatcca cgacgaaatc gtcgctggca cacgggcggc gccgtgggcg      3480
     atcacggacg gcctcatcac ctacgacggc cgcctctaca taccgccaac atctccgctg      3540
     ttgccagaga tcgtggcagc ggtccacgac gatgggcatg aaggggtcca gcgcacacta      3600
     catcgcctcc accgcgattt ccattttcca aacatgcgtc gatgtgtgca ggacttcgtt      3660
     cgggagtgca tcacgtgcca gagatataag acggagcacc tccaccccgc cggactactg      3720
     ctgccgctgc ccgttcccac cgtcgtctgg gctgacatcg ggctcgactt cgtggaggcg      3780
     ctgcccaggg taaacgggaa gtcggtgatc ctctccgtcg tcgaccgctt cagcaaatat      3840
     tgccacttca tcccgctggc gcacccgtac actgccgaga ccgtggcgta ggcgttcttc      3900
     aacgacatcg tgcgcctcca tggtatgccg cagtccatgg tctcggaccg tgacccggtg      3960
     ttcacctcgc tgttttggcg cgagttgatg aggctgatgg gcgccaagtt gcacatgacg      4020
     tccgccttcc accctcaagc agacggccag acggaatcgg caaaccgcgt catcgtcatg      4080
     tacttacggt gtttcaccgg cgaccgcccc cggcagtggc tccggtggct tccctgggcc      4140
     gagtacgtct acaacacggc gtaccagact tcactccggg agactccgtt ccgcgtcgtc      4200
     tacggccgcg acccacccac cctccgttca tacgagccgg gcgaaacccg ggtggctgcc      4260
     gtggcacgtg acatggagga acgagaagcc ttcctcgccg acgtccgata tcgcctggag      4320
     caggcgcagt tggtgcacaa gcgccactat gaccgtcagc atcgccacgt ttcgtaccag      4380
     gtgggtgatt gggcgttgct gcgtcttcgc cagcgcacca tgtcttcact gccacaagct      4440
     acctccggca agctcaagcc gcgcttcatc gggccgtacc tcgtcacgga gttgatcaat      4500
     gacgtcgccg tccggttggc tcttcctccc caggcgcgca tccacgacgt tttccatatc      4560
     agcgttctca agaagttcgt cggcgtccct ccagcagcgc tgccagagct gccccccatc      4620
     caccacggcg tggtcacgcc ggagccggct cgcgtggaac gggcccatct agcgcgcggc      4680
     gttcgtcaac ttctcgtgca ctggcgtggc gaaccggccg aatcagctac ttgggaagac      4740
     ctcgacgcct tccgcgagca gtatcctcag ttccagctcg aggacgagct gattcgcgag      4800
     gaggggagag atgtcatgtg gggcacggcc tatacacggc gtcgccgggc gcgagatgtg      4860
     cggagagctg cggagcgagc cgcagcgcgt gtcgcggcgc agagcgcgat caccgtgacc      4920
     gtggatggca aggacgggct cagtggctag gatcggagta gccttgattc taggagggtt      4980
     tgtttccaag ttgttagcgt ttatttccaa gttagttagc cggagggcta tatactcttg      5040
     taccgaaata tttgagagga aagcatgaaa gttatcgtct aatctccctc ttattctgtt      5100
     aagccactag ctgaggggta taacctcgca ggtgaggact ggagcgcgac tacgagttac      5160
     gtagtcacgg cccgccgtcg ttgagcgccc aggcgcttga ca                         5202
//
ID   HELITRON3_OS repbase; DNA   ; ORY   ; 12693 BP.
XX
AC   AC078840;
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   27-JUL-2005 (Rel. 7.06, Last updated, Version 2)
XX
DE   HELITRON3_OS is a rolling-circle DNA transposon - a consensus
DE   sequence.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; HELITRON class;
KW   HELITRON3_OS; helicase; replication protein A.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-12693
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON3_OS.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
DR   GenBank; AC078840; Positions   34442   47134.
XX
CC   HELITRON3_OS encodes the 1425-aa OSHEL3p and 420-aa OSRPA3Hp
CC   proteins.
CC   OSHEL3p is composed of the rolling-circle initiator and DNA
CC   helicase domains.
CC   OSHEL3p (positions 3077-7452):
CC   MQLLMLTNNAALCPERSYYGGPSHECPYCGAVFWYQERVKRDSAVSQRRIVYNLCCRGGKISLPELKYPP
CC   DMLAKLLKFDGDAQSKRFLRQIRSYNSLFAFTSLGADVEKSINNGTAPYVFKINGVVHHRIGSLLPQRGA
CC   KPKFAQLYIYDTENETANRINIFDRENSNDEPDPSIVTRLGAMLDQHNDLVKSFRYARDRLNEHGNEQIA
CC   LRLLGCNAKDEVQYNLPTSGEIAGIIVGDSSNDAYTYDVVVQSSDNRLRQVSALHPSYMALQYPLFFPYG
CC   ERGFHLGIKYTDFPSIAGTSRRYVTMLEYYRYRFHYRLNKPNPYTCCGRLSDSICVDAYSTVEGSRLKFI
CC   HDHQPELRSECVQGIADAIDHGLESGDSVGKKYVLPSSFTGGRRYMVQNYQDAMAVCRVFGSPDLFVTFT
CC   CNSKWQEIIRYXGGKDLRSCAGRXTSSRHVFSYIILSCXYCSCXYPCFHVVLYTVEFQKRGLPHIHCIMW
CC   RAAADAEFSATAVDSLICAEIPDVFSDPLGYALVDEFMIHGPCGDKNKSCVCMKNGHCSKHFPKGFQEET
CC   TMDEFGFTVYRRRNDGRYVVKNGIKLDNRWVVPYNMKLLKKYQAHINVESCNKSNMIKYLFKYITKGGDR
CC   TKLYFETTGNTPNKTVDGTVLPPNEIDEYINARFLSTCEAFWRAFEFDIHYRVPAVERLPIHLPNMNFVQ
CC   YKKGTDLKKLLDSPAAKKTMLTEWFECNKKHPNARTLTYCDFPKQWTWDNSARCWRPRTPVEKIGRIYYV
CC   SPAAGELYYLRMLLMTVKGAKSYADVRTFEGTVYPTFRQACESRGLLENDNDWHLLFDEAIVSASSLQLR
CC   QLFVTVVMFCSVGNVRSLFDKYWLYFTDDIQHRLRTALSNPAYVVPHDRLLSLLIKELHSAFANSGGNID
CC   DYDLPRSTIHSDDEFGNRMVNEELALDTAALAAHASLMIPXLNSEQQKIFDTIVSRVSESRPGFFFVYGH
CC   GGTGKTFLWNVLISKIRSEGNIVLAVASSGVASLLLPRGRTAHSRFKIPIDIDENSICSIKRGTMLAELI
CC   QKTSLIIWDEAPMTHRRCFEALDRTLRDLLSEHNPSNSVLPFGGKVVVLGGDFRQILPVIKKGTHNSIVD
CC   ASITNSPLWQHVVLLKLTVNMRLFQSGLSEGHRHDLEQFARWVLALGDGMLPVSKRIDESEATWIDIPDD
CC   LLIRASDDKIYSIDTQIRAIVCPNNLTVDEINDYMVAMIPGEMKEYLSCDTISKTSEHIPDFDILYPTEF
CC   LNSINANNFPTHRLALKKGATVMLLRNLNQSLGLCNGTRLLVLSLGHRLLECVILTGSNVGERAFIPRIV
CC   LSTTSSKWPFVLQRRQFPVRVCYAMTINKSQGQTLSRVGVYLKKAVFTHGQLYVAVSRSTSRDGLRILIE
CC   DDDGACSSKTRNVVYHEVLEAVRLM
CC   OSRPA3Hp is similar to the RPA70 subunit of the replication
CC   protein A.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(7766..7909,7984..8259,8923..9000,9088..9210,
FT                 9301..9459,9533..10012)
FT                 /product="OSRPA1H3p"
FT                 /translation="MAYSMLSKLELCADNPRICVRVSRLWEFANPNDETQL
FT                 LHLGLVLIDQEGTSIAAQIYPPCDLQFREIITEGKVYYLEYYRVREWSRRY
FT                 RPVNNSLSICFTRWTKVEQVADPAADFPLYTYSLTPYGGLRQRVDRKEEFT
FT                 GDISLSGNSACKWYINVNTPEVNSFKESIQGKYEPIKMIELPAVGAVRTGA
FT                 EQKSIAQIKDLNPFMFRKNEFMVTVVIKKIDTESSWWYPACDSCKRTAKPY
FT                 GKSYRCGNTSCPAVVSASPRFKLSLIAGDDTGDTKFVLFGRTAQRIIGRPV
FT                 EMLIQNNPAGIEFIPKEITDLLEKEFTWNVAFTENTLSSSTVSFQVNLIVR
FT                 GPDNPCSSALQSPSASQASSAVPSQALSPGLSHGLSIGQCSAAADPSIGFA
FT                 DPIAGIDSPLAASIKHKKPETEYQSK"
XX
SQ   Sequence 12693 BP; 3185 A; 2874 C; 2851 G; 3783 T; 0 other;
     tcggggaaat taaagacaac cgcgaagtgc tcgcaccaca gcgctccggg cgtttttggg        60
     ccggcgtgtt cgcacctgct tgtgtccacg tcgccctatt tggtgtggct gtgttgtgtg       120
     aacccataag cgtactcgca ccgtcactgc tatgtggggc agggagggat gtgggttgct       180
     gttcatggtc ctatcaatgc tttcgttgcc tgtgcgctta gtccattgcc tcaggtttct       240
     ggacctgtct ctgcgtgccc cacttgcagc ttctttggtt cacagtgcac atggagtaca       300
     gggtttttaa caccctgaca tgcttgacca atggtgcagt ttgcacggct ccctaacggc       360
     atgactctgc tcctgcctac ctgccatgcg tgctccgccg aatgcttata tgcagcacct       420
     ggtctaccgt gctccaggta gagcccttcg gcctacggtg tgcatgcgtg atggaccagg       480
     cccacggcta ttttggtctg ctacatcgct ttgatccgct gtgtattccg ttgggcttgc       540
     attgaaaaaa agtcaccaca caacgtctcc tctgtaaacc ctctgcgggt gggctcgctg       600
     ttttgcgctg tcccacatgc catatgctct ggtgcgccaa atagattgcc tccctgctgc       660
     acggcgccaa atagattgcc tccctgctgc gccatgtttt aatgcccacc gcttgcaccg       720
     gcccgctgtc aggtgaggtc caatcaacgt cggcgtccgc cataccagcg tgcgtgatca       780
     tcaatggggc aatgtcctgt tttgccttca gcttcttcct ccccattgtg agagatttgt       840
     ttgtctcctc cgcttttgct ttgctctgct ctgctgtttc cctctcctgc tgacttcttc       900
     agccatgccg acagcttggt gggttgctac ctccatacct agcagatgtc ttcctcatgc       960
     gatttggttg gttggtttga cgctacacgg ttggtgtgca ggtctgcgtg tgggatttcc      1020
     gccagcattg ctgcgtagga tttggtgttc tcgcactggt tagttgcttc cttgatgtgc      1080
     tgtgtcctgg atggtcgatt cttcatcctt tcattttgct tgctgtgggc aggggcaggg      1140
     gaggcggtcg cattgctcta ccgcctgttg gtcgctggca gttcacggtc gagggcaagt      1200
     tgatctcctt ccatcagagt gtgcctgcac cggctcgaag aggttgctgc tcttttcttc      1260
     gctgattttc cccccgcttt tcctttctat ttgttcttat gtttgccctt gccttttcgt      1320
     ctgggttctt ttctcggtgg cctctgttgt gtctgccatg ctgctatgtt gtgtgcgtga      1380
     gaaaataatg ccggttggtg cctcacagat tactgtgcat gggcccgtat aggcccgcgt      1440
     accagtactg gctgcctccc tcttcttata taacccaaac ttctctgggc acttgcctct      1500
     tgcgtagagg ttgctcttgc tggtttttga ccaaccttcc agatcttcct ttctaccact      1560
     cacctaggcc ccatctagca gcgccatggt taatgtgggg gtctcatttg tctctctgtt      1620
     gaatgccgtt gcttggcatt gtcagctccc gctggtgtcc tatctttggg aaatagatgg      1680
     gaatggcatg ctgctagcag gtgttgagct tgcgctccca tcggaagaca tggccggcca      1740
     gattgttagc aagttctttt gggtctgcgc gtctactcaa acaagtgact cgcatgaaat      1800
     ggtcgcgcat caggctgtta ggttcttgca ggctaggtac ggctttattg tccacgatta      1860
     caatcttcag atgttacttt cctaccggag aatagcagcg tctacagtag atgcagctgt      1920
     tacagcctca gcgtgccttg ctaggttcca gtcacgatat gctccaacag atctatcgtg      1980
     tgctggtgtt gtccagcgat gtaacactat atggttcaat tttcttcatg aggaccacat      2040
     gtttagcaac atgcacaacc tttaggggta ttttgtttcc tttagagggt gttagtgttt      2100
     ttcgctactg agtttgtctg caatgagagt gtgcctttat gatgttatta cataatgttt      2160
     tgtattgtct gctttcgatc ttatgttctt cttttgtgca ttgctttcgg ttagttcggt      2220
     gctctctttc ttacgactga tctgacgacg aaaaaatagc tcccctttta tccgctgtgt      2280
     tgttgcctct gagctatgac gagtaatccc tctccgcgag ttcaacgggc ccgtgagagc      2340
     cgtttgcgac gccgtgcttc tattggccag ggtttgtgct tcttaacttg atttagaggc      2400
     gcttcttggg ttagatcgat aagtttgatc gaccagatag ctggggttta tagcattttt      2460
     gcaggctcct ctgttcggcg gcgtaaatcc tgtggtctct aggggaccaa atggttcgcc      2520
     aaatgctgga atagatgtgg agcagtcggt tcctgaacaa gctctggctt ctgatgttca      2580
     tgtgcggtct caggttgcct ttgttgctgg cacaggtcct ttgacccaga attccataac      2640
     caccgctagc attaagttga gcgatagttg tcccatgggc tccataactc ctgacaatgt      2700
     cgattatgct tagctccttt gttctcctca ttgcgattag gaaagagaac cctactagat      2760
     gtgccgcgcc acactgctgc agcaaacagg gaaaaacgac gcctcaagag gtctggttct      2820
     cagccagacc acctggtaag aaaaatccta gaaggtatgg ttaaatatac cttttgtttc      2880
     ccctgtgctc gcttagtgtg gcagttatgt ctgctaacca tttttgcttt caccgatgct      2940
     tgcttcctgg gatttcgaat gcataggtcc cgttcctaca gtggatgaca tcttgccttt      3000
     acctaaggat tacattgcgt ccttaaaagg tttgctcggt gtctactgtc ttacatagct      3060
     tcctttctgt caatcaatgc agttgttaat gcttacaaac aatgcagctt tgtgcccaga      3120
     gcgatcatac tatggtggcc cttcgcatga gtgtccttat tgtggtgccg ttttttggta      3180
     ccaggagagg gtaaagagag atagtgctgt ttctcagaga aggattgtct ataatctctg      3240
     ctgtaggggt ggtaagatca gcctgcctga actaaaatac ccaccggata tgttagcgaa      3300
     gcttctgaaa tttgatggtg atgcacaatc aaagcgtttc ttacgccaaa ttcgatctta      3360
     caactcgctt tttgcattca cttcattagg ggctgatgta gaaaagtcaa ttaacaatgg      3420
     aaccgcacca tatgtcttta aaattaacgg cgttgtgcac catcgtattg gcagcctctt      3480
     gcctcagcgt ggtgcgaagc ccaagtttgc tcagctatac atatatgaca ccgagaatga      3540
     aaccgctaat cgaattaaca ttttcgatag agaaaactca aacgatgagc ctgacccatc      3600
     aattgttaca agacttggcg ctatgctcga ccaacacaat gatctggtca aatcgtttcg      3660
     ctatgctaga gatcgtttaa acgagcatgg taatgagcag attgcactta gactgcttgg      3720
     gtgcaatgct aaagatgaag tccaatataa cctgccaacg agtggtgaga tcgcaggaat      3780
     aatagtgggc gacagctcaa acgatgcgta cacgtatgat gtggttgtcc agtcttcgga      3840
     taataggctg agacaagtct ctgctttgca tccttcctac atggctttgc aatatccttt      3900
     gtttttcccc tacggtgaac gagggttcca cctcggtata aagtacactg atttcccgag      3960
     tattgctgga acatcacggc gatacgtgac aatgcttgaa tactatcgat atcgctttca      4020
     ttataggcta aacaaaccga atccatatac atgttgtggc cgtcttagtg actccatatg      4080
     tgtggatgca tactcaactg ttgagggatc gaggctgaaa tttatacatg accaccaacc      4140
     tgagttacgt tcagagtgtg ttcaagggat tgccgatgcc attgaccatg gcctcgaatc      4200
     tggtgattct gttggcaaaa agtacgtctt gccatcaagt ttcactggag gtcgtcgcta      4260
     catggtccag aattaccagg acgcaatggc tgtttgccgc gtgttcggtt cgcccgacct      4320
     attcgtgacc ttcacgtgca actccaaatg gcaagagata tacgatgccc ttgtgtttga      4380
     accaggccag gtgccggtct gacatgattg tacgagtctt tagcatgaag gtcgatgaat      4440
     tcatatccga tattaaggag ggaaggacct tcggtcctgt gctggcaggt agacgtcatc      4500
     tagacatgtt ttttcctata tcattttgtc atgttagtac tgttcctgct gatatccatg      4560
     cttccatgta gtgttgtata ccgtggaatt ccaaaagcgt ggtctcccgc acatacactg      4620
     tattatgtgg cgtgcagcag ctgacgccga atttagtgct accgctgtgg acagtttaat      4680
     ttgtgctgaa attcctgatg tgtttagtga tcctttgggc tatgccttag tcgatgagtt      4740
     tatgatccat ggcccttgtg gtgacaagaa taaatcatgt gtctgtatga aaaatgggca      4800
     ttgctccaag catttcccta aaggcttcca agaagagacg accatggatg agtttggctt      4860
     tactgtatat aggcgtcgaa atgatggacg atatgtggtt aagaatggaa ttaaacttga      4920
     caatcgatgg gtcgttccat acaacatgaa attactgaaa aaataccaag cgcacattaa      4980
     cgttgaatca tgcaacaaat ccaacatgat aaaatacctt ttcaagtaca taacaaaggg      5040
     tggtgataga accaaactat actttgaaac aactggcaac acaccaaaca agactgttga      5100
     tggtactgtt ttgccaccaa atgagattga tgagtacatc aatgctaggt tcctctcaac      5160
     ctgtgaagcc ttttggcgtg ctttcgagtt tgacatacac tatagagttc ctgctgtgga      5220
     acggttgcct attcatcttc caaatatgaa ttttgttcag tacaaaaaag gaaccgacct      5280
     aaaaaaattg cttgacagtc ctgctgcaaa aaaaacaatg ctaacagagt ggttcgagtg      5340
     taataaaaag catccaaatg cacgaacact gacctattgt gatttcccaa aacaatggac      5400
     ctgggacaat agcgcccgct gttggcgccc aaggacacca gtcgaaaaaa ttggtagaat      5460
     ttattatgtc agcccagccg ctggagagct atactacctg cgcatgctgt tgatgacagt      5520
     taaaggcgca aaaagctatg ctgatgttcg gacctttgaa gggactgttt acccaacttt      5580
     taggcaggca tgtgagtcta gaggccttct tgagaatgat aacgattggc atttgttgtt      5640
     tgatgaggcg atagtttctg cgtcgtccct gcagttaagg caactatttg tgactgttgt      5700
     aatgttctgc tctgttggaa acgtccgatc attgtttgat aagtattggt tatactttac      5760
     tgatgacatt cagcatcgcc ttagaacagc gctctcaaac cctgcttacg ttgttccaca      5820
     tgataggttg ctgtctcttt tgattaaaga attacactct gcatttgcaa acagcggtgg      5880
     taacatagat gactatgacc tcccgcgatc aacgatacat tcagatgatg aatttggaaa      5940
     tagaatggtc aacgaagaat tggctcttga tactgctgcc ttggctgctc atgccagcct      6000
     gatgatacca tgactaaact ctgaacaaca aaaaattttt gacacaatag ttagccgtgt      6060
     tagtgagtcg aggcctggat ttttcttcgt gtatggccat ggtggcactg gcaaaacgtt      6120
     tttgtggaac gtgctcattt ctaagataag gtctgaggga aatattgttc ttgcagttgc      6180
     ttcctcagga gtcgcttcgc ttcttctccc tagagggcgc actgcccatt ctaggttcaa      6240
     aataccgatt gatatagacg aaaatagcat atgcagtata aaaagaggaa caatgcttgc      6300
     agaacttatt cagaaaacat cccttattat atgggatgaa gctcccatga cacatagacg      6360
     atgctttgag gccttagacc gaacgttgcg agatttgctt tcagaacata acccttcaaa      6420
     tagtgtgctg ccatttggtg ggaaagttgt tgtcctaggt ggtgatttca ggcagatatt      6480
     accggttatt aaaaagggga cacacaattc tatagttgac gcatctataa caaattcacc      6540
     gctttggcaa catgttgtcc ttcttaaact cactgttaac atgaggctct tccagtccgg      6600
     tctttctgag ggacaccgtc atgatcttga acaatttgct cgatgggtct tagcgcttgg      6660
     ggatggtatg ctaccggtat caaaaaggat cgatgagtct gaggcgacct ggattgatat      6720
     ccctgatgat ctactaatta gagcttcgga tgacaaaata tattcaatag atacacagat      6780
     tcttcttacc tagcatcgcg tgctattgtc tgcccaaata acttaacagt tgacgagata      6840
     aatgactaca tggttgctat gatacctggt gaaatgaaag agtaccttag ttgtgacact      6900
     atttcaaaaa catccgaaca catacctgac ttcgacattt tgtacccaac tgaattttta      6960
     aactccatca atgccaacaa cttcccgacg cataggcttg cactgaaaaa aggcgcaaca      7020
     gtaatgttgt tgcggaatct aaatcaatcc cttggcttgt gcaatggaac tagattgttg      7080
     gtcctttctc tcgggcatcg tctcttagaa tgtgtgatct tgactggatc aaacgttggc      7140
     gaaagagcat tcataccaag aattgtgctc agcactacga gttctaagtg gccttttgta      7200
     cttcaaagaa ggcaattccc tgtacgtgtg tgctatgcca tgacaattaa caaaagccaa      7260
     ggacagacac tttcaagggt tggggtctac cttaaaaaag cagttttcac acatggccaa      7320
     ttgtatgttg ctgtatctag atcgacctct agagatggcc ttaggatcct tattgaggac      7380
     gacgatggtg cgtgtagttc taagactaga aacgtggtat accatgaggt gctggaggca      7440
     gtcagattaa tggtatattc tcgattgttg atttccacgt gacacgaacc atgtttatcc      7500
     agagtgctgg gatatatttt aaggtgctaa tttcatttta aaatgtagga ttctggtacc      7560
     tagaaccaag tgacaacgtc catgtttgct gctgctctgt tgttcttggt ggctatttta      7620
     tcagctctgt tatcgtgttc ttgtgaaaaa atgtttctct atgttctcag gatcttttgc      7680
     tgtaagcttt gttctctgtt tacatgcagc tcctacttct taggagggcc ttcacactaa      7740
     tgagaaactt ttaccttgct ttcagatggc ctacagcatg ctctctaagc ttgagttatg      7800
     tgctgacaac ccacgcatct gtgttcgtgt ttcaaggcta tgggagttcg ctaatccaaa      7860
     tgatgagaca caattgctcc accttggttt ggttttgatt gatcaggagg tcagttcttc      7920
     agagcactta gcacccagct ttctgtagaa acagattgct ttactaatgt gcttttgaaa      7980
     cagggcacta gcattgcagc acagatatac cctccctgtg atctgcagtt cagagaaatc      8040
     atcactgaag gcaaagtgta ctatcttgag tactaccgtg tgagggaatg gagcaggcga      8100
     tacaggccag tcaacaacag cctgtcaatt tgttttacaa ggtggactaa agttgaacag      8160
     gttgcagatc cggcagctga tttccctttg tacacttact cactcacacc atatggtgga      8220
     ctccgtcagc gtgtcgacag gaaagaagaa ttcacaggta ttctcattgt gttttgggta      8280
     ataaaagcat gacgtacaat gatataatgt ccttcagatc actgacaagt tgcttcctct      8340
     tattgtcaat acaaaaaaaa gatgtcattg gcattattac tgaggtaaca tctgttacga      8400
     cagttcagac gcgcatccga gatggtgata gcctgaagag aagcatttac atacgtgata      8460
     ctaagttagc ctcaaacctt atctattatc ttcattcatg tgaattgcat ttccctagat      8520
     ttgttgatct gtttatgtat tatgtcagtt gactaaccag ctatctccag ctgtactgac      8580
     tttttttctt caacactaca caaatcatac ccatagaaac tatatgctct aacataatca      8640
     ccgtgtccaa caaaccacac atgcgagatt tttatgcact tttttactac atccattcca      8700
     tagcgataca atcttaaatg tggcgctatg gggagaacgt gctacaagct ttcctgtcga      8760
     tgaagtggtt gctgctggtc agaaagaacc acagatagcg atatttgtgg gcactcttgt      8820
     gaggggctat ggtgagtggg ctctcaatgt gtccaaatgt gtttttagac tatgactcca      8880
     attgttttac atatcgtgca ctaacacatt tctttcatag gcgacatatc tctatcaggc      8940
     aactcagctt gcaaatggta cattaatgtg aacactcctg aggtcaactc cttcaaagaa      9000
     aggtttgttc taactttcat ataattcgag tatatttggt ccactctttt acagattccc      9060
     atctaggctc atctgtgcgt tttttacagc atacagggaa aatatgaacc tatcaaaatg      9120
     attgagctcc cagctgttgg agctgttcgt actggcgccg aacaaaagtc aattgcccag      9180
     atcaaggacc tcaacccttt tatgtttagg gtatgttata tgttctgtgt atttaacttt      9240
     gctatcttat agatccatga caataagctc cagctaacat ataatccttt ttacacctag      9300
     aaaaatgaat tcatggttac tgtcgtcatt aagaagatcg acacagaatc atcctggtgg      9360
     taccctgcat gtgatagctg caaaagaaca gcaaaaccat atggaaagtc atacaggtgt      9420
     ggcaatacat cctgccctgc tgtggtgtca gcatcaccta ggtgagtact gcatgtcatg      9480
     agaactggat acctaaaacc aatttagagt ctaaccatgt ttggatccct gcaggttcaa      9540
     actcagcctc attgcaggag acgacacagg tgacactaag tttgtgctct ttgggcgcac      9600
     agcacaacgc attatcggtc gaccagtcga gatgctgata cagaacaacc ctgctggcat      9660
     tgagttcata ccaaaggaaa ttacagatct tcttgagaag gagtttactt ggaatgttgc      9720
     cttcactgaa aacaccctgt cttccagcac tgtttcgttc caagtgaatt tgatcgttcg      9780
     aggtcctgac aatccctgtt cttcagcctt gcaatcccca tctgcatctc aggcatcgtc      9840
     tgcagtgcct tctcaggctt tatcaccagg gctatcacat ggtctctcta ttgggcagtg      9900
     ttcggcagcg gctgatccat ctattggatt tgctgatcca atagctggaa tagacagccc      9960
     attagccgct tcaatcaagc acaagaaacc ggagactgag tatcagtcaa aacctccagc     10020
     tgagcttcct caggaagaag cagaggtaat cgagcaggca tagtctgaat ttttgtcata     10080
     aagcatttct atgttaaaag ttaacattgc taatattgtc gtaatatata taggatgatg     10140
     acaaccttcc actaagccag atagttgctg acgatgctac taaacatagc acgtccaagt     10200
     cctacaagaa aaggtaccaa gctccataaa catgtttatg ttacacataa ggagcaatag     10260
     tttgttctat atgttctaac tgaatttgcc aaacagggct aggccatctc ccggtatagg     10320
     agctgctaag aagttgttca agaataatgg tgatggtgct gctgatggca ggtaaactca     10380
     gcctgtacaa cctgtgctaa aagaagttcg tagaatgtat gactaagcta ttttgcactt     10440
     acatttcagc ggagacaaca atgcctgatg cattgtggga atatgaagct tttgcttgat     10500
     acagttgcag gagagtacac cgtcaggttc agtggcctta catgctgcct ccagcttcgc     10560
     tacggcttca ctgggcaatg tgttatgtac ctatgcaaac tgtgctattg tgttgctcat     10620
     tgtgtgttta tgagcataat acttttgtaa cggaccacga aaacatctac ccatgcgttc     10680
     tgtagttagc taggattcta tgttatcata gatgcactgt gataaccatg aatgctggct     10740
     gttcattgaa cgttctatgc tggacctcct aagattaatt agactgttct aatgttataa     10800
     tccagagcaa tcgaactcga tgttgattct atggttgctt ggttttagaa tccctccata     10860
     cagctgttta ctgaaacaac aatgcgttcc atgctcacgg cacggcgcgt acaacgtatc     10920
     acattgtgtc gtggtactga tttgtactac aaatacatct atttaacctt caacagccag     10980
     cgctccacgc aaaatgtgca gcccatgcct gcacactgac tcccttttta aagagtgaca     11040
     tgccagccta cacagctagc tactcctatg aagggacaac acgacctgct aaaaacgcat     11100
     cccacactct acacttattt catttcagct catcctcttc ttccaccaca gctcagcact     11160
     cctcgccgag tctcacagat tgaatctgaa gaactcctgc tcgaggaaga acaactcttt     11220
     tcctaccatc gtttctacgg gtaagggtgc tcttctctac ctctgttcca gggtatctct     11280
     ctatgccttg ctatgctatg cagtctatac gaaatgcagc cttctgtttc gacgtgattg     11340
     cattgcctga tgcttcggta ataatacatc cggttctatt ttcctagccg cgcatgctgc     11400
     ctgcgcttgg cgataggaac aagagctatt tttagaaaat aaaacatata gcaagaaaaa     11460
     acctagcaaa acaattaatc cggtctaata ctattatgga tgttctttat tagggatgca     11520
     gtttgattgg agcgctgagc taggcgtggg gcagccacaa cgcccttctt cctatggaac     11580
     caatcgtcca ttactagcaa caaaattctc taggcgcaag gagatatcgc atatgctagc     11640
     tgacatcata tacacaagag ctgttgttgt taaggtgtct ggagctggaa atccgaccac     11700
     aacaagaata tcagcgatga taagcgccgt ctgcaggtgt caaattgatg atttcgcatt     11760
     gctccctttc cgcccaaaga tgttcattgc catcttcatg gatgccgatc tgcaggaaga     11820
     actgtctgaa agagctttca aaaaggtatc gttcaccttc aaggcaactc gcctcacatt     11880
     tgagcctttc aagatgaatc ttggtagcac tgtaaatcca ctgtgccagc gggttatact     11940
     tgcgctagaa ggcgtgccac cagaatcatg gaacaaagaa gctatatcag agctcatgga     12000
     cagttgttgt tttgtagagg agttgtatgg agagcaccat atccaagaac tctcaatttt     12060
     taagttagct gcctggacaa cagattgtga ccttataccc aaggtgataa gctggaacat     12120
     tgagactaaa gaaggtcgtc gaggatcagc aaacattagt tggatgcaca atgcaactct     12180
     gtcagttgtg ctggttcata tagagaagct gttcgactac actgacgaag acagtgggag     12240
     tgatagcgat ggagaagttc ttagggaata tgagcagcaa aggccccgtg tccctgttgt     12300
     caaaacattt agctgggtgc ccttgaagat tgatctaaac aacggaccag ttgaaggcgg     12360
     tacaccagcc atagctccac gccgtcttcc tcttgaagtt cgcaggcgtt gtcgcctacc     12420
     ttaattacat aaaacactgc cctctgttat gtatgcttta aagcctaaca ttttcacctg     12480
     cctctccatg cttatggatc atgcgaacag ctgcttagtg ttttctctac gtgttctgtc     12540
     agtttttgtt ttcctaacaa ttagcctgct gagcaaggcc taaacttcca gttcagctaa     12600
     aatatgattc gtatattcct cttagcaatt tactcctttt acatcactga atatgagctg     12660
     ataaggcgcc gcgaagcgcg ccgcaagttc tag                                  12693
//
ID   TWIFBIG     repbase; DNA   ; ORY   ; 3567 BP.
XX
AC   .
XX
DT   13-SEP-2002 (Rel. 1, Created)
DT   13-SEP-2002 (Rel. 1, Last updated, Version 1)
XX
DE   Rice putative hAT-like DNA transposon TWIFBIG.
XX
KW   HAT superfamily; DNA transposon; target site duplication;
KW   TWIFBIG.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-3567
RA   Jiang N., Wessler R.S.;
RT   "TWIFBIG: a putative hAT-like DNA transposon from Oryza sativa.";
RL   Repbase Reports 2(8), 59-59 (2002).
XX
CC   [1] (Consensus)
XX
CC   9bp target site duplications.
XX
SQ   Sequence 3567 BP; 1036 A; 840 C; 765 G; 926 T; 0 other;
     ataggtgtcc aaacgggcgg cgcggcccgg cccggcacgg gcacggttcc ggcacggccc        60
     gtttcggcac ggcccgttag gcacggctga tgaaacgggc cgtgccgtgc cggcccacgt       120
     gccgagccgc cggcccaagc acggcccgtg gatggccggg ccgtgcccgt gccggcacgg       180
     cacacctgcg gcccacgggc cgttcggggc acggcggccc gtgaaggcag gccgccagcc       240
     cgccagcctg cagtgcacag tgtttttttt taaaaaaaag caaaggaaat gtataaggaa       300
     aaaaaattaa aaatggaaat aaaatgttta aaaaaaagta atgatttact aatgttaaaa       360
     aatgaaaaaa tggtatttaa aaaatggaaa taaaagtttt ttaaaaaagt aatgatttgc       420
     taatgttaaa aaaaagaaaa aatggtattt tttttgttgt gttgaaaaat ttaaaaatat       480
     agattgtgat tcattatttt gaaataattt aaagataaat ccacacttgc gaaaatattg       540
     caaaagaatt tgttaaaaat agtaatgacc tttattgatg tttatatcat tacaggatac       600
     aatgatacat gctgcctcgt taaaaacttt gtcatgtaaa aactcatagg ggaaaatgag       660
     aaaaccatga caaagaaaag agtacagctc aaaggtcaga actacttcta acaaaattct       720
     actggggttg gtctggatcc aggtagagtt gctcgaactg agcagccaat tcttggttgt       780
     ccgcagtgta ttgggcatgt tgtcgagcaa gctcccagtc tttaacgctt agtagcattt       840
     cgacgtggtc gctgcgcaga gtcgtcctcc ggtcttcgat gattcggccg catagactga       900
     aggccgattc ggaggacacc gtcgacacgg gcaccgtcga cacatcccgt gctagttttg       960
     aaagcacagg atatgttatc ttgtggtcat tccaccaccc gaggacgttg aaatcttgtg      1020
     cttcgtggtg gatggcgtcg ctgtccaaat aaccggacaa ctcttcggcc acaacatgcg      1080
     aagaggcgtc tccacttgta gccgacgaac tgccaccacc ttggattgaa cttgaagacg      1140
     atccacccca aatcctaccc cactgtatct tcttcttacc tatagtgggg ataggagggg      1200
     gtctctgctg gcgaacttcc tgaaacttta cttcatatct tccaaaaacc tcatataatt      1260
     tacgtctaac ctcagtataa aaagaactat aatctacacc tatagtatct ccaacaagtg      1320
     ataaaatagc agacaatccc cttaatttac acctaggatc taaaacaaaa gcaagagcat      1380
     acaacatagg tatatttttc caatatttca aatatttttg tttcatgtga aagacaggtt      1440
     cagttagaac gtcatcattt tcgtattctt taaataaagt agcaatttca agaaggttgt      1500
     gcaaaattat attagcagtt ggataataaa cttgtgacaa agttagagta caatcataaa      1560
     aagtttctag aaattggtaa aatttttgga caattgccca aacatgctcg ttcagtactg      1620
     aagacccgtc actgtttctt gggccaccac gtgactgaac aaaatcagaa agtaaactac      1680
     tataaggtaa aacaactttt aacattaaat acgttgcatt ccaccgatgc tctgcatcgg      1740
     tggcaaactt acgagctttc acaccggccg cattgcaaaa acctcttcca tgcagcaatc      1800
     cgcgggttag aagcagttaa ccacgcgatt gcttgacgaa cagcatcgat gtggtcacct      1860
     accctcttca tgccagtctt aacaatcaaa ttaattatat gacatgcaca acgctgatgg      1920
     agtagaaaag attgagcata cacacaaaat aaaggttgca atatttcaat agccctagaa      1980
     ttagcagatg cattatctag ggtgacagca aatattttat cagcaagatt aaattcatta      2040
     attacttccc taattctttc agctatgttt tctcctgtat gtgagacatc tattaaccta      2100
     agccctaaaa ctctcttttg taattgccaa tcatcatcaa caaaatgaac aactacgcta      2160
     agataatcct ctctagctct actactccat atatctgaag taacactaac agagaaagta      2220
     catgtactaa acagttcctt aagtgcagtt gcttccttgt gataaacatt ctctaaatct      2280
     ctagttgatg tttgcctact cacagcttta aacctagggt tatgagattg ctgaatgtaa      2340
     tgttcaaaag caggggactc cccaaagttc aggggtaaat cttgcctggc gattaaccgg      2400
     acaagagatt cccgagcaac catgggatcg tactcccaac tgcgtaccgt accgtctggg      2460
     tttaccataa gttgctgctg ccggagttgt attccttgct tcttggcaca cgactccgca      2520
     tggcgcttga ggtgacctgt accaccagaa gaacgagcag ataaaatttg cctacatatt      2580
     ctacaacggg ctttcgatac ctcccttccg tcggggcatg tttcctttat ctcgtcgaag      2640
     ctttgccaca caccggaggt tctcgatctc ttcgagccgg tgtgtgtcga aacacttccg      2700
     ctcgcggttc cggaaaatcc ttccgaagct gtctccgcct gaaccggtac ctcctcaacg      2760
     acagccgtat gaaccggtac ctcctccaca gatggtggag ttggagccga tccggaggta      2820
     ccgtcaaacc ccgacatgta gttggggtcg aaatcaccca aggtgaacga cggcgactgg      2880
     tatggaaagt tcggatccat tctgaaaatt taaaccgaca taaacaaatt ttcgaatatt      2940
     tattgaattc acaaacacaa tacaaataat acacaaattt gaatattact tacatctttc      3000
     caaccgcgag ctcttcaaac ctctgcgatc aaactgttga actacgaaac taattttgat      3060
     ttttgacaaa atttgagcaa attttgtcaa aatcaaaaaa aatgcacact tgagaacaaa      3120
     gagagcactt aaaacacttg agagcacaag atgaggagtg tgggatgagg agaaatggct      3180
     ggggttcatg ccctatttat agggcgaaat ttgagatttt ttggaatttt ttcgaaattt      3240
     ttatgaattt tttagcctcc caacggttat tttcaaattt gaacggtcaa atagccgtta      3300
     gtgccacgtg gcgccttccc attcgaccgc cgcccgccct gtccgcgcct gacgggccgc      3360
     cggcgtgccg tgccgtgccg gcccgctaca gtagccgtgc cgtgccgtgc cggcccgcgg      3420
     gctcggccag cggcccaagc acggcacggc tactcgtgcc gtgccggcac ggcccgttac      3480
     tgtagcaggc cgtgccgggc cgtgcctgct acaggttcgg ccgtgccccg ggccgcccgt      3540
     ttggcccggc ccatttggcc acctcta                                          3567
//
ID   SZ-61LTR    repbase; DNA   ; ORY   ; 2410 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice long terminal repeat SZ-61LTR.
XX
KW   Long terminal repeat; RIRE9LTR; SZ-10; SZ-61LTR; retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-2410
RA   Jiang N., Wessler R.S.;
RT   "SZ-61LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2(7), 116-116 (2002).
XX
CC   [1] (Consensus)
XX
CC   Related to SZ-10 and RIRE9LTR.
XX
SQ   Sequence 2410 BP; 776 A; 561 C; 428 G; 645 T; 0 other;
     tgaaaggacc ttgatgtcgc ctagaggttg ggtgaatagg cgttcctaaa aattatcaca        60
     acttcatagc atatcagagt gatgataact tttgattcaa atcgaaactt ccggtatggg       120
     attggaagtt ccggtctcaa tcgaaaagtt cggcggataa cggaataaac actagctatg       180
     aacttgtagc tcaaacaaac aaaatgtata tgaatcaaaa ggtgacaaat aaggtatcta       240
     agcaagatat aaggtcacct actaaatcaa ttaagcatgc aagtagatca ggtaaaaaca       300
     agctcaagca caatatgaga gaatgcaaga acgggcaaac caagagggga gatgcgtgat       360
     ttgtttcccg aagttcggat ccacggatcc tacgtctccg ttgaggagcc acaagggcca       420
     ggcctatttc aaccctttcc tcacgagggt gcacaaatgc actcctcggt ttcactattg       480
     atttcttccc ttgcggaggc gaaatcgaag ccttcacaaa ctttccatgg cacaccacaa       540
     ccttgggtgc tcaccggcaa cgcctagccg tctaggagac cttagtctcc aagagtaaca       600
     aacacaatcg aagatttgct tgctatgaac tcgagtgctc aaagtatgga gtgaagctca       660
     ctagctctca acttctcaat cactcaatcc aactctttcc ccttctcaaa tccctctcac       720
     aaagaggcac acaaaggatg gagtgaagct cactagctct caactcctca ctctctcaat       780
     ccaactctct ccccttctca aatccccctc acaaagaggc accacaaagg tagggaaatg       840
     gggatggcta tttggctttg gatgtgtcta atactcccca agagcagcag cccctcaaaa       900
     gaggggtgga ggagtttata tacccgagcc cctcaaaaac tagccgttgg aggccaagac       960
     tgtaattttt ggagtttccg aaaagcattt tcggacaagt ccgaaaactt acagaagcaa      1020
     atctcatatt cgcagccact ttcggaatgt ccgaaaattt tcggagtttc cggtaatttt      1080
     tcggactttc cgaaaagcac agagtaaaac gactataact tttcactcgg gagtccgttt      1140
     tcgatgaact tggactctat agaaagctca ctcagaggac tacccaactc aaccaaaaac      1200
     aaggtctaaa accactcaaa ggataggtta aagcttgggc ttctctcaag gtagcactat      1260
     gataggtcac tttgagcacc gagacataca caaacacctc gacgttgcat ccctcttaat      1320
     agtacggcat tcctaaactc aaatgtaaat aagaagataa ttataccatt aggaatgcct      1380
     ttttttcatc cttctttcat tgtctagagg gacgccaatg ccgataccgt ttcaccatat      1440
     attcttcaaa tgattgatgc ggttacttgt agcttcaaat ggtctctcac ggtccatcat      1500
     gacaaagccg tcactcgccc tttaccacca ccggatttgg tccttcggcg ccaagcccct      1560
     tgcttgccct tcaccgccgc atggtccatc gcgaccgagc atcgcttgcc cttcaccatc      1620
     ttgccataat agccacttcg tatcacacat cttcaatatc ttcactttgt cattcttggt      1680
     attgttaggt gtaatgatat cacttgagca tcaacacctt tgtaatcctt gggacctatt      1740
     tctttcattc aactcaataa aattattagt cccaatgatc cggttgtcaa cctccacatg      1800
     ttgaccaacc gatcgcatgt ataaaaggat atgaataaat gatgagtatt aatcaacacc      1860
     acaagtgtca tatactcaaa tatatgttca aatgtaaaga tcccaattaa atgaaggtga      1920
     ataacttgga ttgattacat gcataactaa agtataggat ttgctccccc taaatgtatg      1980
     catacaaaat atttgtgtga agcaagagca tgcataacaa gatattaaac attgagagct      2040
     tatcctatac aagaatagaa ggcatttctc aaatatagat attaaaataa aaatatacct      2100
     tcatcatctc cacgttctca atgtaaatag actaaataag agataatact caaacaaaac      2160
     attagtctca catgcatatg ccaatcacgt ggaaatatta tatacgaaca tatcaatatg      2220
     tacatgaaga gaaagagtga tacatatagc ttgatctcca tgcatttcat ccttgtgatt      2280
     taggtccacc aacactccaa tttcatatcc acatgagaat aggcaaagaa atgcttataa      2340
     aaacattagt ctcacataat tggatttgtt attaatcatc aaaaccaaat caatgtcact      2400
     tgaactttca                                                             2410
//
ID   LINE-5      repbase; DNA   ; ORY   ; 431 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice long interspersed nuclear element LINE-5.
XX
KW   LINE; long interspersed nuclear element; LINE-5.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-431
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences.";
RL   Plant J 25(2), 169-179 (2001).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 431 BP; 133 A; 119 C; 117 G; 62 T; 0 other;
     aacgctactc caatcagcgg gagggggcaa agccacgcta cactcccaac aaatccccaa        60
     aggaagcaac acccgctaac gaccacagct ggccttccga aagaatggac tctaaaacca       120
     ctgagaacga agagagcaga gtcaaaaacc ctagagttcc gttccttcca cagttgccaa       180
     gagactagaa ggatcaggga gtcgaagccg gcacggaggc gttcaagtaa acagacccta       240
     gaagatggcc accagttctg gagccagttg ccatgggggg agagggcagc ctagccagga       300
     ggggacaaca cctgtaacca gacctgccga gcgaacacgc agtcgagaag gatgtggttc       360
     gtcgtctcaa gctcctgagc acaaaaagga taagtcaagt ggccatcgat gccacgcttc       420
     tggactagat c                                                            431
//
ID   RETRO2_I    repbase; DNA   ; ORY   ; 10690 BP.
XX
AC   .
XX
DT   19-MAY-2005 (Rel. 10.05, Created)
DT   23-AUG-2005 (Rel. 10.05, Last updated, Version 2)
XX
DE   Internal portion of gypsy-like LTR retrotransposon - a consensus
DE   sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; RETRO1;
KW   RETRO2_I.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10690
RA   Jurka J.;
RT   "Gypsy2: A consensus sequence of gypsy-like LTR retrotransposon
RT   from rice.";
RL   Direct Submission to Repbase Update (19-MAY-2005).
XX
CC   [1] (Consensus)
XX
CC   This element is highly similar to RETRO1 element over the first
CC   ~6kb region. The remaining 4.5kb of the sequence has no
CC   counterpart in RETRO1. It contains extra putative proteins on the
CC   complementary strand.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(34..1710,1709..2509,2513..6238)
FT                 /product="RETRO2_I_1p"
FT                 /translation="FSELSYSFVCAKLLLFSPMAEPAKAHDLSPSVSGDDG
FT                 EPNPRRRARTPPPPPRQSPRREEALERVERSATSPSAGDGEGRRDGERRLL
FT                 VYGDGSTPQGALQAAGALLRHPPVVPDPESPAQRWLDDVANLVMTAQQRLG
FT                 AGGRSSATKASGAATTGSVSSRRRARRAAAVARHSAATPSSTPPTREDLRG
FT                 GPDARLNIERRRNGRRAAHATEGASSSRVSPRHGRGDQPSVPPVGGVGCRA
FT                 FVASLRNVRWPPRFRPTITEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMAN
FT                 FFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEEADLHA
FT                 VQRGDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGVCGTTACSKRSPPK
FT                 SPRLPRSFFSSRTEWLVRRRHGPGTPPVPVWQLRPPPGPPLRQGGVTGGGR
FT                 RGRPIPTTRVMSSPSRALRGPPERGGLRATKRKRPALPAGSAQPASGAPST
FT                 TPPSTTSRTAAQSKVWLSGRGSGRRRGGRSAVRASPRRFLPAIGEVRPSRR
FT                 PPPRTSMMAMMTPRFPGAWGHHCHRRWGACAHVSRRSLKAMKRELLAAAPT
FT                 HEATRRARWSEVALTFDQTDHPPCVARGGQIAMVVSPTVCNVKLGRVLIDG
FT                 GAALNILSPAAFDAIKAPGMVLRPSQPIIGVTPGHTWPLGHIDLPVTFGGS
FT                 ANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKMPGPGGPI
FT                 SVHGDLKVALACMEQRADHLAAASKPEGGDERLGTSAPAAPRQRIVTCDEV
FT                 PVKEVALGDGPSKTTRIGGLLDGKEDALVSFLRANADVFAWRPADMPGVPR
FT                 EVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPE
FT                 WLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLL
FT                 CFLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTT
FT                 RISLGSQLGRNVEAYVDDLVVKTRNQETLLSDLAETFESLRSARIKLNPDK
FT                 CVFGVPAGKLLGFLVSARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAA
FT                 LSRFISRLGEKALPLFKLLKRSGPFTWTEEAERALTQLKAYLSSPPVLVAP
FT                 EPNEPLLLYLAATPQVVSAALVVERDEDNPHSAHPHPVLTWPGREQGGEAP
FT                 EPNGGPRPPTTGAGPLPACQTVPGAPDPQDGPEATAGRPRLSPSDLEANPV
FT                 PIRPGREQGEEAPEPNGGLRLLTTGVGPLPACPTTPGAPDPQDGPEATVGR
FT                 PPLSTSDPEVVGTEDECAPRGRLDEERPGDAAPGEEDRPRRKVQRPVYFVS
FT                 EALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSYPLGQILHNR
FT                 EGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWTPAPEPVSIPEAS
FT                 SDPSQLPHTAHWVMQFDGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATN
FT                 NMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYV
FT                 RQVRRMERHFDGIELRHVPRRDNMMADELSRLASSRAQTPPGAFEERLAQP
FT                 SARPDPIGETDAPDRPPRPVGVQASGPEGSAPSSLRLIAWIAEIQAYLTDK
FT                 TLPEDREGSERVHRISKRYVLVEGTLYRRAANGILLKCIPREQGVELLADI
FT                 HEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQ
FT                 PAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAIDKFTKWPEAYPV
FT                 VKIDKHSALKFIKGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCF
FT                 ASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRT
FT                 TPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYL
FT                 EERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLS
FT                 PMWEGPYRVIGVPRPGSIRLATGDGTELPNPWNIEHLRRFYP"
XX
SQ   Sequence 10690 BP; 1937 A; 3499 C; 3354 G; 1900 T; 0 other;
     tctggcgcgc caggtagggg actctgcgtg tgattttctg agctctcgta ctctttcgtg        60
     tgcgccaagc ttctcctgtt cagcccaatg gccgagccag caaaggcgca cgacctctct       120
     ccgagtgtga gcggtgacga cggggagcca aacccacgcc gtcgagctcg tactccaccg       180
     ccccctccac gccaaagtcc taggcgggag gaggcgctcg agagggtcga aagatccgcg       240
     acttcgccat ccgcgggaga tggagaagga cggcgagatg gggagcgtcg cctcctcgtc       300
     tacggcgacg gcagcacgcc ccagggcgcg ctccaggctg caggcgcgct cctacgtcac       360
     ccgcccgtcg tccctgaccc ggagtctcca gcccaacgtt ggctggacga cgtggccaac       420
     ttggtcatga cggcacagca gcgcctaggt gctggtgggc ggtcctccgc caccaaggcc       480
     tctggcgctg ctaccaccgg ctccgtgtcg tcaaggcgga gggcgcggcg agcggcggct       540
     gttgctcgcc attcggccgc cactccctcg tcgactcctc cgacccggga agatctgcgt       600
     ggggggccgg atgcccgcct caacatcgag cgccggcgta atggccgacg tgctgcccac       660
     gcaacggagg gcgcttcctc gtccagagtg tcacctcgac acggacgcgg ggaccagccc       720
     tccgtgcccc cggttggtgg tgtcggctgt agagcctttg tggcgagtct tcggaatgtc       780
     cgttggcccc caaggttccg gcccaccatc accgaaaaat atgacgggag cgtcaacccc       840
     gccgagtttc tccaggtcta tacgaccggg attgaggccg ccgggggtga cgacagggtc       900
     atggcgaatt tctttcccat ggccctgaaa ggacaggcgc ggggttggct aatgaacttg       960
     ccacccgcgt cggtccactc ttgggaggat ttgtgccaac agttcaccat gaacttccaa      1020
     ggcacatatc cacgcccagg tgaagaagcg gacttgcacg cagtacagcg aggggatgat      1080
     gagtcacttc gctcgtacat tcagcggttc tgtcaagtcc gtaataccat accatgcatc      1140
     cctgcacacg cggtgatcta cgcgttcagg ggggtgtgcg gcacaaccgc atgctcgaaa      1200
     agatcgcctc caaagagccc cagactaccg cggagctttt tcagctcgcg gaccgagtgg      1260
     ctcgtaagga ggaggcatgg acctggaacc cctccggttc cggtgtggca gcttcggccg      1320
     cccccgggtc cgccgctcag acagggcggc gtgacaggag gaggaagaag aggtcggccc      1380
     attccgacga cgagggtcat gtcctcgccg tcgagggcgc tccgcgggcc acccgaaagg      1440
     ggaggcctgc gagcgacaaa aagaaagagg ccggcgctcc cagcagggag cgcccaaccg      1500
     gcaagtggtg ctccgtccac aacacctccc tccacgacct cgcggactgc cgcgcagtca      1560
     aaagtttggc tgagcggacg aggaagtggg aggaggagag gaggcaggag cgccgtgagg      1620
     gcaagtcccc ggcggttcct tccggcaatc ggcgaagtga ggccaagcag aaggcccccg      1680
     ccgaggacat cgatgatggc gatgatgacc taggtttcca ggagcctggg gccaccattg      1740
     ccaccgtcga tggggagcgt gtgctcacgt ttctcgccgg agcctcaagg ccatgaagcg      1800
     agagcttctg gccgcggccc ctactcatga ggcgacgcgc cgggcgcggt ggtcggaggt      1860
     tgccctcacc tttgaccaga ccgaccaccc accgtgcgtt gcccggggag gacagatcgc      1920
     gatggtggtt tcccccaccg tttgcaacgt gaagttgggg cgtgtcctca tagatggagg      1980
     agcagccctc aacatccttt cccccgcagc ctttgacgcc atcaaggccc cggggatggt      2040
     gctccggccg tcccagccga tcatcggtgt gacgccgggg cacacttggc cgctaggtca      2100
     tatcgacctc ccggtcacct tcggtggatc cgccaacttc cgcacggagc gggtgaactt      2160
     cgatgtggcg gacctcagtc tgccctacaa cgcggtcctg gggaggcccg cgttggtgaa      2220
     gttcatggcg gcggtccact acgcctacct ccagatgaag atgccgggcc ccggtggccc      2280
     catctctgtc catggcgacc tcaaagtcgc gcttgcttgt atggagcagc gcgcggacca      2340
     cctcgccgcc gcgtccaagc ccgagggtgg cgacgagagg cttggcacct ccgcccccgc      2400
     cgccccgagg cagcggatag tcacgtgcga cgaggtcccg gtcaaggagg ttgccctggg      2460
     cgacggcccg tccaagacca cacggatcgg tggtcttctg gacggcaaat aggaagacgc      2520
     gctcgtctcc ttcctgcggg caaacgctga cgtcttcgca tggagaccgg cggatatgcc      2580
     cggggtcccc agggaggtga ttgagcaccg tctcgccgtg cggccgggcg caaggccggt      2640
     ccggcagaaa gtgcggcggc aggccccgga acgtcaagcc ttcatccgcg aggaggtggc      2700
     gcgacttctg gaggccggat tcatccgtga ggtcatccat ccggagtggc tggcgaaccc      2760
     ggtggtcgtc cccaaggcga acggcaagct tcggatgtgc atcgactaca ccgaccttaa      2820
     caaggcatgt cctaaggacc cttaccccct gcctcgcata gatcagattg tcgactccac      2880
     cgcggggtgc gaccttttgt gttttctaga tgcatactct ggttaccatc agattcgcat      2940
     ggctagggag gatgaggaaa aaactgcgtt cattaccccc ataggaactt attgttatac      3000
     aacaatgccc ttcgggttaa agaatgcagg tcctactttt caacgtacta ctcgaatttc      3060
     tttgggtagc caattaggac gtaatgttga ggcttatgtc gatgacttgg ttgtaaagac      3120
     gcgcaaccaa gagacgttac tctcagatct agcggaaact tttgaaagtc tccgctccgc      3180
     ccgcataaaa ctgaaccccg ataagtgcgt gttcggtgtg cctgcgggca agcttctcgg      3240
     gttcttggtc tctgcccgag gcatcgaggc caaccccgag aagatacgag ctatagagcg      3300
     gatgcgcccc cccagcaagc ttagggatgt gcagtgcgtc accggttgca tggccgccct      3360
     aagtcgcttc atatcgaggc tgggagagaa ggcgctaccc ttatttaagc tcctcaaacg      3420
     ctccgggccg tttacttgga cggaggaagc tgaacgtgcc ctcactcagt tgaaggcata      3480
     tctcagctct cccccggttc tggtcgcccc ggagccaaat gagcccttgc tactctactt      3540
     agcggcgacc ccgcaagtgg ttagtgcggc gttggtcgtg gagcgcgatg aggacaatcc      3600
     tcattccgcg cacccccacc ctgtgctgac ttggcccggg agagagcagg gaggagaggc      3660
     ccccgagccg aacggtggcc caaggccccc gacgaccgga gcaggccctc tgcccgcttg      3720
     tcagacggtg ccaggtgccc ccgaccccca ggacggcccc gaggccactg cgggaaggcc      3780
     gcgcctatcg ccctctgacc tcgaggctaa ccctgtgccg attcgacccg ggagagagca      3840
     gggagaagag gcccccgagc cgaacggtgg cctaaggctc ctgacgaccg gagttggccc      3900
     tttgcccgct tgtccgacga cgccaggagc ccccgacccc caggacggcc ccgaggccac      3960
     tgtgggaagg ccgcccctgt cgacctccga ccccgaggtc gtcggcacag aagacgagtg      4020
     cgccccgcga ggccgcttgg acgaagagcg ccccggggat gcggcccctg gcgaagagga      4080
     tcggccccgc cgaaaggtgc agcggcccgt ctactttgtt agtgaggccc tccgggacgc      4140
     caagacccga taccctcagg cccagaagat gctttacgct attctgatgg cctcgaggaa      4200
     actgcgccat tatttccagg cgcatcgggt cacggtggtt acgtcttacc ccctcggcca      4260
     aatcttgcat aatcgagagg gtactggacg agtggtgaaa tgggcaatcg aactttctga      4320
     gttcgatttg cactttgaac cacgccacgc tatcaagagc caggccctcg ccgattttgt      4380
     ggcagagtgg accccggctc ccgagcccgt ctcgatcccc gaggccagct cggacccctc      4440
     gcagctgcct cacaccgccc actgggtgat gcagttcgac ggctccctgt ctcttcaggg      4500
     cgccggtgcg ggggtcacgt tgacctctcc gagcggagac gtcctcagat acttggtccg      4560
     cctcgacttt cgagcgacca ataatatggc agagtacgag ggactccttg ccggactcag      4620
     agtggcagct ggactgggga tccgccgcct cctggtgtta ggcgactccc agctggttgt      4680
     taaccaagtc tgtaaggagt accggtgctc tgacccgcag atggacgcct acgtgcgcca      4740
     agtacggcgt atggagcgcc attttgacgg gattgagctt cggcacgtgc ccagacggga      4800
     taacatgatg gccgacgaac tctcacggct cgcgtcctcg cgagcccaga ccccaccggg      4860
     cgcctttgaa gaaaggcttg cccagccgtc ggcgcgaccc gaccccatag gggagacgga      4920
     tgcgcctgac cggcccccga ggcccgtcgg agtccaggcc tcgggacccg aggggagcgc      4980
     tcccagctcc cttagattga ttgcttggat cgctgagatc caagcatacc tcacagataa      5040
     gactctaccc gaggaccgcg aagggagtga acgcgtccat cgcatctcca aacgctacgt      5100
     gctggtagaa gggaccctct atcggcgcgc ggctaacgga atcctcctga agtgcattcc      5160
     tcgggaacaa ggcgttgagc ttcttgccga tatccatgaa ggcgaatgcg gagcccactc      5220
     cgcctcgcgc accttggttg gcaaggcctt tcgccagggt ttctattggc cgacagctct      5280
     caatgatgcg gtcgacctgg tccggcgatg cagagcgtgt cagttccacg ccaagcaaat      5340
     ccatcagccg gcccaggccc tgcagaccat accactttcg tggccatttg ctgtctgggg      5400
     gctcgatatc ctgggaccgt ttaggcgggc cccgggcggg tttgagtatc tgtatgtcgc      5460
     gatcgacaag ttcactaagt ggcccgaggc ttatccggtc gtcaagatcg ataagcactc      5520
     cgcacttaaa ttcattaagg gcatcacggc ccggtttgga gtgcctaacc gtattattac      5580
     ggataatggc acccaattca ctagtgaact cttcggcgac tactgcgaag acatgggcat      5640
     caagctctgc ttcgcctcac ctgcccaccc cagaagcaat ggccaagtgg agcgcgccaa      5700
     tgcggaaatc ctcaaaggcc ttaaaaccaa gaccttcaac atactcaaga agcacggcga      5760
     ttcatggatc gaggagttgc cagcggtgct ctgggcgaac cgaaccacac caagccgagc      5820
     aaccggggaa acgcctttct tcctcgtcta cggcgcggaa gcggttctcc catccgagct      5880
     caccctgagg tctcctcggg ccaccatgta ctgcgaggct gatcaagatc agcttcgcag      5940
     agatgacctc gactacttgg aagagcgaag gcggcgcgcg gccctccgag ccgcgcgcta      6000
     ccagcagagc ctgcggcgct accatcagcg ccacgtccgg gcccgatcac tctgcgtcga      6060
     cgacctcgtc ctacgccgcg tccaaacgcg tgctggattg agcaagctct caccaatgtg      6120
     ggagggtccg tatcgagtga tcggcgtccc ccggccgggc tccatacggc tggccacggg      6180
     cgacggcact gagctgccta acccgtggaa catcgaacac cttcgtcgct tctacccctg      6240
     agggggggtc gggtgtcagg tttcgggctc gggccaaccc cgcaccccct cgggcgtgca      6300
     gggttggccg ggggctacca cacatgcact ttcttatttc tcttatttca gtatttcaat      6360
     aaaagcagtt tcaatttcct aaaggctgtg tctgtgccgt tttttccttt tgaagaatct      6420
     tgacttgaaa taggtcactc gtgctcaatc ctgccctcgg gggctcgggt cggctaaaat      6480
     cgccaaacgg ggcccagaac cgagccgtgc cccggggcgt ggtgaactcc gggggggaat      6540
     cggcaaaaac ccacaatcgg gtcacccata accctcggtc accacgttcc cggcctggcc      6600
     agtctcgaca tgtggatctc cccaggcact agccccgacc cgcgcctttt gaggactggg      6660
     acctgtgcac gagcccttaa tcaagctaag acacaaaagg accacggcac agatcatcct      6720
     catctcatac tcacagcaag ataaaattaa cacagaaatt tcttcatttt tgattacaga      6780
     ttaagttgat ctatacaaaa aagaggcccg aaggccttag aaaaagaaaa agaaaaaact      6840
     gaagattggc gggggcctgg gggctcattc cgatgcgccc gggtcgccgg cctcgtcgcc      6900
     actgtcgtcc gcaccaccgg catcgccctc ctcgtcggag ttgggggcga acgcgagccg      6960
     aggggccgag ccctcgaagc tgtggacgat gtggtcggcg gcatcccgga cctcggtccc      7020
     gggagggaac tcatccagcg ccatccatgg ggagaagtcg gggtccctgg cctggtaact      7080
     cgccaggacg agctccaccg ctccttgggc gaggtccctc gaggatgact tgattgtctt      7140
     ctcgagctcc tcggggagcc gttggagagc cccggccatc ttcgagaggc gctgggcgag      7200
     gcctccctgg ttggcggcgt actttacggt ccgccctctc cagaggcccg cttgccgacc      7260
     ggcgcgatct aggcgggaga cggcatccca aagcatgccg ggccctacct cgcccgccaa      7320
     gcggagggct tcgacctccc cggcggacga gtccagcgcg ccctgcagat cggcgatggt      7380
     gtgttcggca gctgcgaggc gggcggctac gtcgctttcg cccgcggccg ccccgccgct      7440
     gcgcgccctc gcgtccagct ccttcgcccg cgcctcgagc tcagcggccc actggtccag      7500
     tgcggccctc tcggcgcggg cgccttccag attacggcgc gcctgctcct cctgcgctgc      7560
     ctcgcggagg gacaggctgt ccgccagccg ttgcgccgcg gcctcggcct cctcgagagc      7620
     tcgctcccgc tcggtgagcg cgtcctcgcg gaggcggagc gcggactcct cttcggcgca      7680
     ggcggcctcg tgcgccgcca gcgttgcctc ccggatggcg acggcggcct cgcggtccgc      7740
     caggtccctc tccacgacgc aggcgcgctc ttccagcgcc atggcgcgcg cctcaagggc      7800
     ctcttcgcgc cgccgggacg ccgcttcggt ctccgccgcc cgctgttctc gggcagcggc      7860
     ggcgtcaagg accccctggg cggcgtcgag cttcttctct agctccgcct cccagctccc      7920
     gtattgaagg cggagggtgt cctgcgcctc gttcatcacg gtggtggcga tgagggcagc      7980
     ctcccgctcc tcctccacct ccctggcgat ctccgccagc accttcttac gggcttcaag      8040
     ctccgagatg tgccggcggt gagccttacg gcccacctcc accatggcct ccaccgagcg      8100
     tcgcccctct tcgacgcgcg cccacgcggc gtcgagctcc gcccgctctg cctgcagggc      8160
     ctccacctgg gcacttaacc catccaacac cgtggtgttt gcggcggcca aggcctgcag      8220
     aaggggctct gcgctcagtg gggcggtaga aggcgtgggg aagagccgcc ttggagagga      8280
     tgccacgcgg ctcggcccgc cgatggacgt gccggactcg gggatgtccc ccggacccgg      8340
     ttggtcctga gcgtcgcccg agggagcggg cccaagcgat gcgcccgcag cctcgtcgcg      8400
     agctgccccg gaagttgtcg cctgagcgtc gcccgaggga gtgggcccaa gcgacgcgcc      8460
     cgcggcctcg tcgcgagctg cctcggaagt cgccaacatc tcgtcctggc gggctcgggc      8520
     ggcctcctcc cgaacggctt cctcggcctg gcgggcccgg gcggcctcct cccgagcgat      8580
     ttcctcggcc tggcgagccc gggcggcctc ctgggcggcc tcctcggctt cccgaaggcg      8640
     atccgcggcc tctcgccggt cagattcccg cctccgggcc tctgcggccg ccggatcctc      8700
     ggcctcagac tggccggact tggaatggcg ggagggacgc gacgggatct cgctgaagca      8760
     gaagaaaaga ccagaagaca aacgagatgg gtgagtgaaa acttgcgttg ggagaatgaa      8820
     tacggccgcg atgggcgaga gacgaacctg cgagggggtc ggttaaacga ccaccttgga      8880
     ggggaaatga ggtttccccg ggatggttct gtctccccca tcttgcggag ccacttcttc      8940
     ttgcgctccc cctcgggctg cgatgtcggc gcggccccct ccgggcgcct gctgctggca      9000
     cgcgccgccc cgccccctcg gggaggagat gggggaggtg ttcctccctg cttcctcttc      9060
     ccccgggcgt cggcagggcg gctgctcccc gggcccccgt cgcggggccc agaagcacga      9120
     ccccctcctg gggtagattg ttccccccgg cggctcccgc ctgcgccgtc gtggccctta      9180
     ggagcccgct cctctgaggc cccgaccgcc atcatgatgg tcaggatgga ggcgcggtct      9240
     ggatcgctgc agagggggag gattccttga ggaatgaggg acgcctccac ggagctgaga      9300
     ttcagcaccc gttggaccac tatcttgaag tcctcaggag cccagtccca tctgactccc      9360
     tggtgggtcc tcatgtagtc ctcggacccg gtgtactccc aggcgccccg ggcgcgccgc      9420
     tggagcggcg caatccggcg acggaggtag tcgccgtaca ccatggcccc tgtgagcccc      9480
     tgggatcgca ggcccgccag gcggtcgagg acggcgtcat agccatcccc cagatctacc      9540
     ggcgcccgcc agctggaggc ctgcgccggg ggctggctcg gaagtcggag gcgcgcttcg      9600
     tcggcaaggg gggtgtagaa ccagtcgctc ttccagtcgt cccacttctt gcggagggcg      9660
     caggggatgt agcggttcag caccggcccc cgcggctgga agtagcagcc accgactacc      9720
     gatggcggcg acaccgactg cacggtgaag aaccaccgga acagccgaag agatgggcgc      9780
     accccaatga acatctcgca caggtgcgcg aagatggcca atgtcatcac cgcgttgggg      9840
     gtgaggtgcg ccatctggag atcgtagaac tccagaacat ccatgaagaa agaagaaaat      9900
     ggcggaacca gccctgccat tgcgaagggg aggaagaaga cggaccgccc cgggtagtct      9960
     ggcgccgggc gtccctcgcc cagcgtgact atctcccggc cggtggcaga ttccggcatg     10020
     aagcggcgcg gcagcccagc ctgcctctcg ctcacgatgc gggaaggcgg cagcacgcta     10080
     ccatcgagca gagcggagcc ccgtgccatg gcgccggaag gaagagaaga ttgagagcga     10140
     gtgcgtgtgg cgaaggtagg gcacaggaaa gaaagagtta gggcgcaagc ggcgaaggca     10200
     aggggaataa tggcgaaagg aaggaaacaa atcccttcct cagtgccttt atacccttgc     10260
     caacgctgtg cccggctcct cgtttctcgc gcccactgtt tcgccccctc gtttctcgcg     10320
     cccacgcttc cactaatccc attcgcccgc ttgcggcgca tgaggtggat atgcggttgt     10380
     ggcagtcgag atagatcata tcgtgcgcgc gttaattacg ctcgccgacc aaagcgacgt     10440
     taccatatct ccagacgaaa cgaatcggca cgtccagatt cgtgcgctac tcgagtaatg     10500
     tggcagtctt gaagagaccg ctcattattg acggccgagt taccattgcc gatgtgcgtg     10560
     atttgtgacc gttgggtttc tgcccaattg tggagaccgg tcccacctgt caccaggcct     10620
     taggagtggc gtcacgcccg accgcttccc ttgaggaggg cgatcgccct ggcataacgc     10680
     cgggggctac                                                            10690
//
ID   NDNA1TNA_OS repbase; DNA   ; ORY   ; 334 BP.
XX
AC   .
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   10-JUL-2002 (Rel. 7.06, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon NDNA1TNA_OS.
XX
KW   DNA transposon; Interspersed Repeat; NDNA1TNA_OS;
KW   nonautonomous DNA transposon; TNA target site duplication;
KW   imperfect palindrome.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-334
RA   Kapitonov V.V., Jurka J.;
RT   "NDNA1TNA_OS.";
RL   Direct Submission to Repbase Update (16-AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   It is a nonautonomous DNA transposon, an imperfect palindrome.
CC   It is flanked by 3-bp duplications of the TNA target site.
CC   There is one young subfamily of this element, its copies
CC   are 1% divergent from the consensus sequence. The second,
CC   older subfamily includes copies that are ~5% divergent from
CC   their conensus sequence, which is 96% identical to the
CC   NDNA1TNA_OS consensus sequence.
XX
SQ   Sequence 334 BP; 116 A; 53 C; 50 G; 115 T; 0 other;
     ggccctgttt agatgggact aaaactttta agtccctatc acatcggatg tttgaaaatt        60
     aattataaat attaaacgta gactattaat aaaacccatc cataatcttg gactaatttg       120
     cgagacgaat ctaatgagcc taattaatcc atgattagcc tatgtgatgc tacagtaaac       180
     attctctaat tatagattaa ttaggcttaa aaaatttgtc tcgtgaatta gcttttattt       240
     atgtaattag ttttgtaagt agtctatatt taatactcta aattagtgtc taaagacagg       300
     gactaaagtt aagtccctgg atctaaacac cacc                                   334
//
ID   SZ-53       repbase; DNA   ; ORY   ; 5576 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice retrotransposon SZ-53.
XX
KW   LTR Retrotransposon; Interspersed Repeat; SZ-3; SZ-53.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5576
RA   Jiang N., Wessler R.S.;
RT   "SZ-53: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 107-107 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-53 has 371bp LTRs.
CC   Related to SZ-3 but in different orientation.
XX
SQ   Sequence 5576 BP; 1337 A; 1247 C; 1342 G; 1650 T; 0 other;
     tgtcacggca tcgtcatcgt catctcctgt tcctcatcag acaagcgatg tagcttctcc        60
     gtcggaccaa gatgggctca gaaagtcgca tcgtgaacga cggcccaatc cggcctatca       120
     cgggagtgag tggacccagt agtgactggc tgggccacat gtaagggaga gagatccaat       180
     ggctcattgc tatataagga tcggcagaga agagatgtga tttgaacaat gtaaaaacag       240
     aattccccat ctaaatcaat ccttctctgt tctatctctg cttctctgag ttcttccttc       300
     ttccttccaa tttcttccaa aatcctcacg aatcctccat tgttgcggta caaagctagg       360
     gtgtcgtgac aaattgatat cagagcagtt aatcctggag aagccacgct atacctctcg       420
     tttgcagctt caggtggagg ctatggagaa gcaaaatatt gatttcggca aggtgctggg       480
     tgagatccag gagtccttgg tgttgctgaa tcgagctcaa gtggatacgc aggcctccat       540
     cgtcaagctg gatcaaggcg tgagtgcttg gagaccacaa gtggaggcgg ctgtgcagga       600
     tctgcgtgac gaagttggtg accttcgtca gcaggtggat cttctgaaca aggcgaaaca       660
     agctccaccg gcggcgtctt ccccttgggt cctgttgacg ggcaaggaaa ggaaggcccc       720
     gttgctgcct acgccgacgg ctacctcacc agcagctgtg gcggagggtg cagagaaatg       780
     ggccaacggc caccgtcttc atcaaaattt ctggggaaag gcatcgggtg tagttactac       840
     cctgatccat tctccgggca agggtacgtc tgattccaac cgaattccct ttcgatcctt       900
     ggagaatttc gatttggatg ggggggcgag tgattttgac cagggaaatc ggcagtacaa       960
     tcatagagtt cctaaacttg atttccctaa gtttgatgga tcagacccgc aggattggct      1020
     tatgagatgt gagcattact ttgatgtgaa caacacttat ccagggttat gggtgcgggt      1080
     ttcaactatc tatttcattg gtagagcagc ttcctggctt aggtcttcta gggctcatgt      1140
     tcgtttccct atttgggagg atttctgtgt ggcagtagct aacaaatttg atagggatca      1200
     acatgatgaa ttgattagac aaatggatac aattaggcag acagggactg tgtgggagtt      1260
     ttatgagaaa tttgatgagt tgatgaatca cctgttagct tatgacccag cagtgagtat      1320
     gagatatctt atccataggt ttactgaggg tttaagacgg gatattcgta atgctgtcct      1380
     cctgcaacga cctcgagacc tcgaaactgc tcttgctatt gctactttat aggaagaagt      1440
     ggcggaatcg tcgggtggac attcaactcg tgaattgaag aaatttgatg gccaagtgaa      1500
     taatagatct tctctgaaag gggcttggcc attacctcaa cctcctggac gagtagttgg      1560
     gggtaatcgc actgaagatc gtctgggtac tgaaccacat cgctcgacct cttcttcgtc      1620
     agacaaaatt tcagctctca aggcacaacg gcgtgcacaa ggactttgtt atatctgtgc      1680
     tgaaaaatgg tctcctacac ataaatgctc tacttcagtg caactgcatg cagttcaagt      1740
     gcttttcagt attttacatg aaactgacag tactcttgat gatgagccag cagtttctcc      1800
     cactggtaca ttgatggcaa tatctcttca agcagtattg ggttcagaaa ctgatggcac      1860
     catgtgaatg gtaggtcaga ttcaagggct ggagattctc atcttggtag attcgggcag      1920
     ttctgtgagt tttctgaatt ctaccattgc tgacaatcta aagaatgttc agagaaaacc      1980
     tcaacaaatt tcggttcaag tggctaatgg aaatatcttg cattgtactt ctgccattac      2040
     taattgtcaa tggagcactc aggggtatgt gtttaataca actctcaggg ttctttctct      2100
     taacagttat gacttgattt tgggcatgga ctggttgaca gagcatagtc ccatgacagt      2160
     gaactgggcc accaaacagc ttactgtctc actgaaagga caatttattc tgttacaagg      2220
     aattaattcc caggtttctc agtgtaactt actgcttggc catcaaatga aacagctgca      2280
     agctagacag gcagtggctc atcttgttca gttatgtgtc tctcatagta atatagagca      2340
     ggagtttatt ccagacagtg tgcagcaagt gcttcaggaa ttctctggta tctttgatga      2400
     accatctggt ttacctcctt cccgatcatt tgatcacact attcctctgc tgcctggggc      2460
     tcaacctgtt agtgtgcgac cctatcgtta cacccctgcc caaaaggatg agatagaatc      2520
     agaggttact gagatgttgg ataagggaat aattcagcct agcgcaagcc cattctcttc      2580
     tccagtgctg ttagttaaga aaaaagatgg cacgtggcgg ttttgtgtgg actaccgtca      2640
     tttgaatgca attactgtca agaataagta tcccctccct attatcgatg aattgcttga      2700
     tgagttatcg ggtgcacagt ggtttaccaa gcttgatctt cgatcgggtt atcatcaaat      2760
     acgaatgaat tctgccgatg agcataagac tgctttccgt actcaccatg gtcactttga      2820
     attcaaagtg attccctttg gtcttactag tgctccagcc acctttcaag gggtgatgaa      2880
     tagcattttg tcctcgctct tgcggcgctg cgtcttggtt ttcatcgaca atattctgat      2940
     ctatagccgc tcgttggagg aacatgttaa gcatttgagg gctgtttttc agattctcgc      3000
     tcggcatcag ctcaaagtca agaagagtaa atgctcattt gcacaacagc ggttatcgta      3060
     tctgggtcat gtcattagtc caaatggagt ggccacggat gaggagaaaa ttcaggctgt      3120
     gcaaatgtgg cccacaccta cctctatcaa ggaattgcgc agttttttgg gtttggcggg      3180
     atattatcga aaatttgttc gacattttgg tattctcagt aagccactca ctaatatgtt      3240
     gcgcaagggt cagattttca tctggacgtc agtggctgaa gaatcctttc aagctctcaa      3300
     acaagctctc atttctgccc ctgttttggc gatgcccaac tttgctcttc ctttcacagt      3360
     tgagaccgac gcctctgata aaggaatcgg ggttgttctg ctacaaaatg atcatcccat      3420
     agcttttttg tctcgtgctt tgggtcctcg ccatcacgga ttatctactt acgaaaagga      3480
     aagtttagct attatgcttg ctgtagagca ttggcgccca tatcttcagc atgcagagtt      3540
     ttgcatacgt actgaccacc gtagtttgtc cttcttgact gaccagcgtt tgtctactcc      3600
     ttggcaacag aaggcagtca ctaagcttct tgggttgcgt tatcgcattg tgtataggaa      3660
     gggcactgag aatggggcgg ctgacgcatt gtctcgtgtt tctgatcctt tcctggttat      3720
     gttgttggct ttgtcaattt gcattccgga atggatgcaa gaaattatta atggttatca      3780
     acaggatccg gatgcttgca gtaaggttca ggctctttgc atcaataatg ctgcagttcc      3840
     tcagtttact ttgaagaatg gaattttata ttttcaagat tgcatttgga ttggtcagaa      3900
     tagctctgtt cagcagaaga tcttagctaa ccttcataca gcggccattg gtggccactc      3960
     tggtattcag gtgacttacc aacgcatcaa gcagctcttt gcgtggcctg gattgcgtgc      4020
     agatgtggtc cgatttgtgc aaagttgcga tatctgtcag cacgccaaat cagaacatgt      4080
     gcggtatcca gggtttttgc aaccattgcc ggttcctgat cagtcttggc cagtggtttc      4140
     tttggatttc atcgaaggcc ttccccgttc cgcatcattt aattgcatct tagttgtggt      4200
     tgacaagttc tctaagtatg cacactttgt ggccttggcg catcctttca cagcttttga      4260
     agtggctgaa tcttatatgc aaaatataca tcggttgcat ggattacctt aagctctcat      4320
     ctctgatcgg gatcgcattt tcactagcac attgtggaca actctctttc gattggctgg      4380
     tactcaatta aggatgagct cttcttatca cccctagaca gatggacaaa ccgaacaagt      4440
     taatcagtgt ttggaaacgt ttttgcgttg ctttgtgcat gcttgtcctt ccaaatggag      4500
     ccgctggctg accctcgctg agtactggta taatacctcc tttcactctt cgttgggtac      4560
     cacacctttt gaggttctct atggccacaa accgcgctac tttggtttaa cagcagctgc      4620
     agcttgtcca tcttcggacc ttgctaattg gctaacagaa cgtgaccaca tgctatcctt      4680
     gattcgggag catttgcagc gggctcaact acgaatgaag tctcaggctg atgctaagcg      4740
     ctctgaaaga gagtttgctg tgggcgattg ggtgtatatg aagctgcagc cctttgtcca      4800
     gcaatcagtt gtcactcgca ctaatcgcaa gctttctttc cggttctatg gtccatttca      4860
     ggtgcttgcg cgcgtcggcc aggtggctta tcgtctggcg cttcctgcat ctagtttgat      4920
     tcattctgtg gtgcatgttt ctcaactcaa gaaggcattg gctcctactg aaacagttca      4980
     atctcaattg ccggttttcc ttgctgatca agatgcttct ccaactcctc ttcgcatttt      5040
     ggatcggcgt tttgttcgta agggagccaa actggtggaa tttgttcagg ttacttggtc      5100
     tggaccagat gctgaggtga tcacctggga gaatgctcaa gaattgcggc atcgctttcc      5160
     atcggctgaa gcttggggac aagcttcgtc tcaatggggg gagaatgtca cggcatcgtc      5220
     atcgtcatct cctgttcctc atcagacaag cgatgcagct tctccgtcgg accaagatgg      5280
     gctcagaaag tcgcattgtg aacgacggcc caatgcggcc tataacagga gtgagtggac      5340
     ccagtagtga ctggctgggc cacatgtaag ggagagagat ccaatggctc attgctatat      5400
     aaggatcggc agagaagaga tgtgatttga acaatgtaaa aacagaattc cccatctaaa      5460
     tcaatccttc tctgttctat ctctgcttct ctgagttctt ccttcttcct tccaatttct      5520
     tccaaaatcc tcacgaatcc tccattgttg cggtacaaag ctagggtgcc gtgaca          5576
//
ID   SZ-5LTR     repbase; DNA   ; ORY   ; 1223 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice copia-type long terminal repeat SZ-5LTR.
XX
KW   Long terminal repeat; retrotransposon; COPIA superfamily;
KW   SZ-5LTR.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1223
RA   Jiang N., Wessler R.S.;
RT   "SZ-5LTR: a copia-type LTR from Oryza sativa.";
RL   Repbase Reports 2(7), 114-114 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1223 BP; 376 A; 359 C; 222 G; 266 T; 0 other;
     tgtaggatcg aatcacaaga actaagccaa ccagaggggg gtgaatggtt ggtataccca        60
     aaaaccgaaa acttttagcg gaaataaaag ttaccctcga aatcgatgga tcgcggtctg       120
     accgaagtag ttgcgccggt ctgaccgcct gatgaatgtc ggtctgaccg atgtagatcg       180
     atcggtcgaa ccgccgaaaa cgcctgcagc cgactcctgt tgccgccggt ctgaccgccg       240
     tgtgcccgcc ggtctgaccg ccgcgatgcc gccggtctga ccgccggtgc gccgccggtt       300
     agaccgccga aacccggtga aacacaaatc gaagaactct taaagtcgat gacgacttta       360
     ttacttctct ctgtgtttac aaagtgcacc aacagcactc cttacaaaat tttcgactaa       420
     actcaaaacc ctaactcaaa actcaactca attgctctct aaagcgatac cgggaagcct       480
     cacgctcccc ctctatttat acatgaggta ggcagcttaa agccacgaac caaactcata       540
     ctaggagtcc taaacacctt aggaaaccca ctagtacaag aaagaaactt tacataacca       600
     atcgtaccaa atttggactc cttccaaatt ctactccgca tcccatacgc acacaataac       660
     tccatcgtat gccatatgga atctccatca accacgtgca tcaactcttg cctaagtatc       720
     ccgcatgatc tctgaccacc acggacgtcg tcttatcccc aagccgactc ccggtccatc       780
     accgcaaata ctctcccaag acatcgagtt acctacacat ggaacaaaca aagaaaccat       840
     attccgagac caagctatct ccaactttga ctcattagca gcaaacaata gtattacata       900
     cgtatagtat ccatctagaa gtcataatca tggaataaac tcggatatcc aaataaacaa       960
     cccgaaaccg aaatcgacac agtatcggcc ggtcagaccg cgggttgcgc cggtctgacc      1020
     gcgcattaca cgtcggtctg accggctacc agagcccggt ctgaccggtc cacacaatca      1080
     cagcagtacc tgtatattca cctgtgaaat ccaatcatct ccaaaccact tcgtgaataa      1140
     attcctaata acaaaaccaa taatctccaa tgcccaattg ttcatcacag aatatgaatc      1200
     aaaaacactt ttgattttac aat                                              1223
//
ID   TRUNCATOR2_OS repbase; DNA   ; ORY   ; 2904 BP.
XX
AC   .
XX
DT   29-MAR-2005 (Rel. 10.03, Created)
DT   29-MAR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Rice LTR sequence - a consensus.
XX
KW   LTR; retrotransposon; TRUNCATOR2_OS.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-2904
RA   Gentles A., Jurka J.;
RT   "Rice TRUNCATOR2 LTR sequence.";
RL   Direct Submission to Repbase Update (29-MAR-2005).
XX
CC   [1] (Consensus)
XX
CC   Long LTR sequence from rice, most similar to TRUNCATOR (75%
CC   similarity). There are around 20 copies with similarity to the
CC   consensus above 93%.
XX
SQ   Sequence 2904 BP; 968 A; 638 C; 638 G; 660 T; 0 other;
     tgtcacgccc ggaaattcac tagtaatttc cgaacttatt tgtgcataaa atcctcgtcc        60
     aggaatcagc cgaggtacac aaactgacaa tttaatatac aaatccatca taataataac       120
     gttacatact tacaaaagaa aagaaaacag cagcggaatt aacggtctag cgatggcttc       180
     agctccactc ccacaggcag ctcaactggg gtataagcca aacgtcttct ccttctggat       240
     cctttatctt caactgaggt tgattgatta ttgcaagaat gagcatatga catactcaac       300
     aagccacaca gcaaatatgc aagtgcacaa ggataccaaa ggatggcata atataggctc       360
     atttgcaaaa gcagcattta gcaaagcagt taagagtagt aaaacagtag agtaattaat       420
     taaaaatttt aatcaacact gaacagcaca cccatgctgc acaggcccaa ccatcctgaa       480
     caaccatacc cggctgtaca gatctaactc caaaccagga gctaagcaaa ttattaccag       540
     gtataacatc cataattatt gtgagaggtg tgagactaat cacgaaaaac attgctcaac       600
     ccgcccataa ccgcgggcac ggctattcga atagttttac tctggccaga ggtgtaccac       660
     tgtacccaca agacacaacc ccacatcatg tcaccatgtg cctcaatacc accacggtac       720
     ctcggaaagg agttgtgaca ataccccttg cacaacataa cccattacag cgcacctttc       780
     ctggatcata atcaccccct tataaacaag gcatggactc cccagcgacc cccgtggact       840
     tctcgccact tctcagtctg gcgcactata atgaatcacg ctatacaaaa gataaagccg       900
     ttgcccacgc tggcttgtgg ttggcacgat aaatgtttca caacagtagc tcgcgaaccg       960
     gtccttaatt gtcatgagca cgactctcaa aaccatgtgc tcacaaccca ccattatcaa      1020
     gttttagttg gcaagtaatt aattaaccaa tcacgattaa ccatcgtgaa ctatcattaa      1080
     gccatcctta aataatagtg agtcataagt tatcccaata gtgtgctaat gtttctaagc      1140
     atggctaagc aatcataact aatatctagc tgaaccaata tataaagccc aactagtcaa      1200
     gttataataa cccaaggtat caaggaataa agtaatcaat gcaaattggc cataacaaag      1260
     gaataagttc acaccacccg gtgacattcg aaaataaatg cacagttgaa ataaatagag      1320
     aatttaaata taggatcaac atgctcaaag gattgtgttt aggatctgtg tgacttgcct      1380
     tgcaataatc ggtcttcaat taatcttctt gaacacttcc gacgcactca cgaaccttcg      1440
     caacgacgga aacgacaagc taacacgcaa aacgaagaaa aagactaata aaaaccaaat      1500
     aaacagtaca tataaagtaa acaaacatgt agatcatgat tttagatgaa tttagcaact      1560
     tgaaccactc aaaaccgagt tacgatgatt tagttatgaa tttccgaaga tttaatctat      1620
     tagaaaaaca ggaaaaagaa aaacgatgat gacgtcatga tgacctcatc aatggccgga      1680
     ccaagatggc gacctcgccg gagattggat ggtcggctgc gactttggag gacatgtaca      1740
     cgtagaggac gacgagacga acccaacggt actcaccctc gaaccaaacg acgaacgacg      1800
     acggccggcg acgaggtcta gcggcggctc ggcttcggtc gacggcggcg acggggctcc      1860
     ggtgaccggc ggctgcgggg agagggcggc cgagcttctc cacacctcgg cgcaccttac      1920
     ggcggtgacg gcgaccggcg gcgacgacgg aggcggcggc gcgacgcgga tggagctcgg      1980
     ccggcgacga cggcggggtg gagcacgtgg cggcggcgct acgaggcacg ggagaccacg      2040
     ggagaggggg caaacgaaag aggaggacta gggggtccta tttatagcct tggattgaag      2100
     agatcggact cctcccgcaa gaaatcgatc cgggaaatca aaaactcggt tttggagata      2160
     aactcgaaaa cgagttcgat tcggataaga tactcaacga tttgctccga tttttggggg      2220
     taaagataga ggaggataag aggaatattt cccctaaaac aattggagac ggagacgagg      2280
     gatttggtcg gaattggagg cggaaaaggc acggccggct ggctcgggct ctgcctgcgg      2340
     ctgctggagg atgaagagaa gccgacatgt aggttccact tttcggtggg ctgagaagga      2400
     gaggagggcg gctcggctgg gccggctggg cgggcgcggc cggcaaggaa aagaagaaat      2460
     gggccgaaaa cggcccaaac tgagaagagg gattttatta cttttccaat taaaataatc      2520
     actgaaatga tctttgaatt gttaaaaata cttccaatgc tcaaataatt ccaagaaaaa      2580
     tcttgaaaat acttggacac tcaaagtact taacaaaatt ataattagac catttaatga      2640
     ttaatttaat atgtgggtaa ttactgaaat gctctttgta tgattaaaat taggaattga      2700
     gctccgaaaa atccgagaaa attccagaga gtataattaa ccatggagaa tttaataaaa      2760
     attaaatcca tccatgcttt atatttagga aattttattt cccacattta acttcacttg      2820
     taaattaatg aacatttaat ataaattcta ttaataattt attaaataat ttataaatcc      2880
     tgaaacgaaa atcaggatgt gaca                                             2904
//
ID   RPO_OS      repbase; DNA   ; ORY   ; 1992 BP.
XX
AC   .
XX
DT   20-MAY-2005 (Rel. 10.05, Created)
DT   20-MAY-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Repetitive element from Oryza sativa - a consensus.
XX
KW   Repetitive element; RPO_OS.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1992
RA   Jurka J.;
RT   "Putative retroelement from Oryza sativa - a consensus
RT   sequence.";
RL   Repbase Reports 5(5), 132-132 (2005).
XX
CC   [1] (Consensus)
XX
CC   This is an unclassified element. It contains a minisatellite-like
CC   tail and is not flanked by reognizable flanking repeats. It could
CC   be a SINE element or an abundant retropseudogene derived from an
CC   unknown RNA. The youngest elements are 95% identical to
CC   consensus.
XX
SQ   Sequence 1992 BP; 467 A; 368 C; 244 G; 913 T; 0 other;
     aactagctgg gtggcccgcg caattgcgcg gctagcaccc aaacaaaatc atatattttt        60
     tagtatgatt ttacttaaaa tttattaaat agctatctca ttgtcttaag actttgaaag       120
     accaaacctt atcatcctcg tgtttctaat tatatagttt ttaaaagtca caccagttgc       180
     taccccttat gtcatctcct tctttatttg cttgctcgat ctaccactat ttctattcat       240
     tcttcttgga acctttaaaa attggatttt atagttttta gagtttattg tcacgttggg       300
     tttcattttt ataatttcta gatgtcccgt caaacgttgc cattatactc ctctacggcc       360
     cgtccactgt ctcttctctt tattgtcatt gagattttaa aaatcgaaca taattatcgt       420
     ttgggttcat tttttacttt ctagaagtcc cgccaaaccg tcagcggctt tgccattgta       480
     ctcctctacg gctcgcccgc tgcctccctt ctttattgtc attgagattt taaaatcgaa       540
     catgattatc attggttttt tttttacttt ttagaagttc cgaaccttta aaaattggac       600
     ttgtagtttt atttttttta taatttttag aagtcccatc aaacgatgcc actatgcccc       660
     tctacagccc gtccgccgcc tactctttat tgtcattgtg attctaaaaa tcgaacataa       720
     ctatcgttgg aattcatttt ttattttcta gaagtcccgt caaccgtcgg cggctctgca       780
     actatactct tatacacccc gcccgctgct tctccttttt attgtcattg agattttaaa       840
     aatcgaatat gattatcaat ggggtttatt ttttttactt tctagaagtc ccggcaaccg       900
     ccttactcgt ttgcttcacg gcctgcctga cgtccctcct tttaatcgtc attaggattc       960
     tatttggtgt tttattaaca atttttatat gtcgtatcaa ccgccaccac tctactcctt      1020
     tataggcatg ttacttaatt tatctcgtca tgtgttttag atggtctttt ctttcaatag      1080
     tctttatttt tatcacaaat tttagttatt tataaattgt attcctaatt gaaatcttat      1140
     ttttcttttt ctaatttcag aatttatttt tttaaaaaaa ttagttaata ccgtattgtg      1200
     ttcttttaat gtttttattt ttttattttc aatttcagtt gtttcaaaat tgtattccta      1260
     cttgaactct cttttaattt ttctaatttt ggatattatt ttatttttta ttctaaattt      1320
     taattaatct cgtattgggt tcttatatgg attcttcttt caatattgct tatttttaat      1380
     tccgaatttc agctaatttt aaattgtatt cctacttgaa ctcttctttt attttctttt      1440
     gctaatttcg gatttatttt tatttttatt ccgaatttta attaatctcg tattgggttc      1500
     ttatatggac tcttctttta atattcctta tttttaattc cgaatttcag ctatttttaa      1560
     attgtattcc tacttggact ctcctttcct tttctaattt tggattttat tttattttta      1620
     tttcgaattt tgattaatct cgtattgggt tcttatatgg aaacttcttt caatattgct      1680
     tatttttaat tccgaatttc agctattttt aaattgtatt tctacttgga ctctcctttc      1740
     cttttctaat tttggatttt attttatttt tatttcgaat tttgattaat ctcgtattgg      1800
     gttcttatat ggaaacttct ttcaatattg cttattttta attccgaatt tcagctattt      1860
     ttaaattgta tttctacttg gactctcctt tttttttttt ctttttctcc gattaatgtg      1920
     ggaatttcta gcccccacag cgaacgtggt gcctcctttc aaagctgttt taataatata      1980
     atagatagat ta                                                          1992
//
ID   RIRE5-I_OS  repbase; DNA   ; ORY   ; 4471 BP.
XX
AC   AB105803; AB105803.1; GI:29027728; VERSION;
XX
DT   11-JUL-2003 (Rel. 8.06, Created)
DT   11-JUL-2003 (Rel. 8.06, Last updated, Version 1)
XX
DE   Oryza sativa retrotransposon RIRE5: internal sequence.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; ORF; RIRE5;
KW   RIRE5-I_OS; RIRE5-LTR_OS; internal sequence.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4471
RA   Ohtsubo H., Ohtsubo E.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (13-MAR-2003)Hisako Ohtsubo,
RL   Institute of Molecular and Cellular Biosciences, The University
RL   of Tokyo, Section of Chromosome dynamics; Yayoi 1-1-1, Bunkyo-ku,
RL   Toukyo 1130032, Japan (E-mail:hohtsubo@ims.u-tokyo.ac.jp,
RL   Tel:81-3-5841-7854, Fax:81-3-5841-8484).
XX
DR   Genbank; AB105803; Positions     996    5466.
XX
SQ   Sequence 4471 BP; 1284 A; 834 C; 1155 G; 1198 T; 0 other;
     atccaaaaac ttgataggtc tttttcggta gttggctttg ctgcatcact aaaaccacat        60
     gctttcgatg gttcaaatta taaaagatgg aaagcacgtg cacttttgtg gttgacggtg       120
     atgcattgtt tctttgtctc acggggcaaa ccgagtgaac cgcctctctc tcctgaggag       180
     gaagctaagt tcgaggctac ggattgcttg ttccgtggag cattgatcag tgtgctcgcc       240
     gataatattg tggatgtgta tatgcacata ccttcaggga aggacatgtg ggatgctctt       300
     gaggccaagt tcggggtttc cgacgccggc agcgagctgt atgtcatgga gcagttctat       360
     gactacaaga tggtcgatga ccgttctgta gtggaacagg ctcatgagat tcagatgctg       420
     gtaaaggaac ttgagaacaa ccactgcgag ttgccggaca agtttgtggc tggaggcatt       480
     attgccaaat tgccaccttc ttggtcggac tttgctactt ctctaaaaca caagaggcaa       540
     gagttcagtg ttactgatct cattggctct ttgggtattg aggagaaggc gagggcaaag       600
     gacaaccggg gcaaaaagat cgagggaggt tctagcgcca atttggtgca gaagaagaac       660
     cctcacgcat cccacaacaa caacaagaaa gtcaaacctg acgtcaaacc caaggctaca       720
     accaatttta agaagaaagg caagggaaag gcaaaaggag attgctttgt gtgtggcaag       780
     cctgggcatt gggccaagga ttgtcctgag cgcaaggaca agaagtctgc aaacatggtt       840
     attagtgagg acggaggaac attggggtat ggtaaatttt tacctacagt tctctctgtc       900
     tgtcactcac ctgattggtg ggttgatact ggtgctaata ttcatgtgtg tgcggacatt       960
     tccctgtttt cttcttatca agtcgggaga ggttcctcct tgttgatggg aaacggatcg      1020
     cttgcggctg ttcatggtgt tggtacggtc gatctgaagt ttacttcggg aaagatcgtg      1080
     cagctgaaga acgtgcaaca tgtcccttca ataaagaaga atctagttag cggctctcta      1140
     ctgtgtagag atggttttag acttgtgttt gaatccaata aatgtgtcgt atctaaatat      1200
     ggaacgttta ttggaaaagg ttatgacagc ggaggtttgt ttcgcttttc cttggatgat      1260
     atgtgtaata aagttgtgaa ccatgtaagc gatgatgatg atgagtccaa tgtgtggcat      1320
     tcgcgacttt gtcatgtgaa ttttggttgt atgacacgct tagccaacat gagtttaatt      1380
     ccaaaattca ctttagtcaa aggctctaag tgccatactt gtgttcaatc gaaacaacct      1440
     cgcaagcctc acaaggcatc tgaggcgagg aatttggcac cactagaact tgttcattcc      1500
     gatctgtgcg aaatgaacgg cgtgttgact aaagggggaa agaaatattt catgacactg      1560
     atagatgatt gcactagatt ctgctatgtg tacctattga aaacaaagga tgaagcatta      1620
     cattacttta agatctataa ggctgaggta gaaaaccaac tggaaaggaa aatcaaacgg      1680
     ttgagatctg ataggggtgg agagtatttt tccaatgagt ttacttcttt ctgcgaagag      1740
     tatggaatta ttcatgagag gacgcctccc tattcacccc agtcaaacgg ggtagccgaa      1800
     agaaagaacc gcactctaac tgagatggtg aatgccatgt tagacactgc aggactttcc      1860
     aaggaatggt ggggtgaggc aatattgact gcgtgtcatg tcctgaatag aattcctact      1920
     aagcataagg aagtaacacc attcgaggaa tgggaaagga agaaattaaa tctctctcac      1980
     ctgcgcacat ggggctgttt ggccaaggta aatgtaccta tagccaaaaa gcgtaaactt      2040
     ggaccaaaga ccgtagattg tgtgttcctt ggttatgcta tccacagtgt gggatatagg      2100
     ttcttaatag taaattctgg agtacccgac atgcgtgttg gtacaattac tgagtccaga      2160
     gatgccacat tttttgagaa tgaatttcct atgaaaaatg cacctagcac ttctagtcaa      2220
     gaacctattt tatcccctga gcactttgtg ccgatagaac acattgatca aacgcttgag      2280
     gaaaatcctg aggaggataa cattgtagca actcgaaaga gtaagagaca aaggactgca      2340
     aagtcttttg gagatgacta cattgtatat cttgtggatg atactccaag aaccattgaa      2400
     gaggcatatt catctcctga cgctgactat tggaaggaag cggtacgcag tgagatggac      2460
     tcaattatgt ctaatggtac ttgggaagtc gtcgagcgtc catatgggtg caagcctgta      2520
     ggatgcaaat gggttttcaa gaaaaagctt aggcctgatg gtacaattga aaagtacaag      2580
     gcaaggcttg tggccaaggg ttatacccaa aaagaaggcg aggatttttt cgacacttat      2640
     tcaccggttg ctcgcttgac cacgattcga gtactactcg ctctggcagc ctctcatggt      2700
     ctactcgtcc atcagatgga tgttaagaca gctttcctca atggagagtt ggaggaggag      2760
     atctatatgg atcaaccaga tgggtatgta ctagaaggtc aggagggaat ggtgtgcaag      2820
     ctgttgaagt ccttgtatgg tctcaaacaa gcgcctaagc aatggcatga gaagtttgac      2880
     aatacactta catctgctgg ctttgttgtg aacgaagctg acaaatgtgt gtactatcgc      2940
     tatggtgggg gagagggagt gatcttgtgt ttatatgtcg atgacatatt gatctttggg      3000
     accagcctca atgtgattga ggaggtcaag gactttctgt ccaaaagctt tgaaatgaag      3060
     gatttgggag tggctgatgt tattcttaac attaaactac tgagaggaga tgagggtggg      3120
     attacacttg tgcaatctca ctatgtggac aaggtcttga gtcgctttgg ttatagtgac      3180
     tgcaaggcag ctcctactcc ttatgatcct agtgtgctat taaggaaaaa ccgaagaata      3240
     gcaagggatc aattgagata ctcccagatc attggttcat tgatgtactt agctagtgca      3300
     acgaggcctg acatctcatt tgctgtgagc aagttgagcc agtttgtttc aaatccggga      3360
     gatgatcatt ggcatgctct tgaaagagta atgcgctatc taaaagggac aatgagctat      3420
     ggaattcact acgccgggta cccaaaagtg ctggagggct atagtgattc aaactggata      3480
     tctgatgctg atgagataaa ggccacaagt gggtatgtgt tcacacttgg aggtggcgct      3540
     gtttcctgga agtcttgcaa gcagaccatc ttaacgaggt caacaatgga agcagaactc      3600
     acagctttag atactgccac agttgaggcc gaatggcttc gtgagctcct gatggacttg      3660
     ccggtggttg aaaaaccagt accggcaatc ctgatgaact gtgataatca aacagtgatt      3720
     attaaagtga acagttcgaa ggacaacatg aagtcatcca ggcatgttaa aagaagactg      3780
     aagtctgtca gaaagcagaa aaactccgga gtgatagcat tggactatgt ccagacggct      3840
     aaaaatctgg cagatcagtt taccaagggg ctaccacgta atgtgataga ctgtgcatcg      3900
     agggagatgg gcttgagacc cacttagagt tgcacaatgg tggaaacctg tccattgtga      3960
     tcggagatcc cgtgaatttg gatggcgaaa caaactattg tgtaactgag agaagagacc      4020
     ctaaaatggg cttatcttca tgatgcactt ctcttctaat ctgtatggta ggatggtata      4080
     caccttaatg tgatccgagt ggcttttcat aaagcagaga tgttggccta cagaacatct      4140
     tagaaggaac acacctatat gagtccgact gctagtcaca gtctatgaga tctgggtgat      4200
     ctctagatac tcatgaaaag gccaggagta tgacttatac gctccaaaca gaggggatgc      4260
     aaacggcagc ctagtaccag ttaagggttt gagtgaaacc tgaatcgcac aagactgaca      4320
     attcaaggca tagtccattg ttcagttgtg atctggtgta gctcttttcc taggtggaag      4380
     ttcaacttaa cagtctccac cgaaacactg gtataacaaa caggatcaga atcgagagca      4440
     tttcctgtga gccatgaaat ttggtgggga t                                     4471
//
ID   ATLANTYS-I_OS repbase; DNA   ; ORY   ; 10724 BP.
XX
AC   .
XX
DT   06-DEC-2004 (Rel. 9.11, Created)
DT   02-JUN-2005 (Rel. 9.11, Last updated, Version 2)
XX
DE   Internal domain of rice ATLANTYS_OS gypsy-like endogenous
DE   retrovirus - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; ATLANTYS-I_OS;
KW   ATLANTYS-LTR_OS; Gypsy-like endogenous retrovirus; SZ-19LTR; gag;
KW   pol.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10724
RA   Gentles A., Jurka J.;
RT   "ATLANTYS_OS, a rice Gypsy-like LTR retrotransposon.";
RL   Repbase Reports 4(11), 285-285 (2004).
XX
CC   [1] (Consensus)
XX
CC   ATLANTYS_OS is a Gypsy-type LTR retrotransposon from Oryza
CC   sativa. It has ~1500 bp LTRs, and a 5 bp target site
CC   duplication. There are approximately 30 full-length elements
CC   in the rice genome, with average similarity to the consensus
CC   of 90%; along with numerous fragments. ATLANTYS_OS is related
CC   (59% similarity) to the Arabidopsis thaliana elements
CC   ATLANTYS1 and ATLANTYS2. ATLANTYS_OS has weak similarity also to
CC   RETROSOR1 and RIRE2 from rice. A characteristic feature of
CC   these retroelements is that the normal env encoding domain is
CC   replaced by an ORF for a protein of unknown function on the
CC   opposite strand. The corresponding LTR is ATLANTYS-LTR_OS.
CC   gag-pol:
CC   MEFKVRVHGVQGDGAQGLQGGNLNQNSDAAQDFFNNFQDRVDYAVHHALINQSGVLVNTLSNMM
CC   KSIADGSIAEHQAAGPVYLQGGVFPNYRPLITDVQPSIQAVPPVAPSAQPTAPASTPLPAPSAL
CC   APGQLVNPRLLMREQPQHSGQVVNRLTQDQVAAMFLPPQPTVDPIQQQPIQQTPPIQQVVQPIQ
CC   QQVVQPVQQTPPRQQPLQPIQQTPLRQQIYGQFEPMQQQSQGAAQQRPWADVIADVMREQFGLK
CC   PKETGSLYRQPYPEWFERVPLPNRFKVPDFSKFSGQDAIKQRHDEPVHEYIQRFREMRNKCFSL
CC   SLTDAQLADLAFQGMIAPIREKFSSEDFDSLSHLIQKVTLHEHRSAEARKXSKKVNHVCPYMYG
CC   SDDDEDDSEIAAAEWVRSKKVIPCQWVKSSGKEEKYDFDITKADKIFDLLLREKQIQLPAGHTI
CC   PSAEELGKKRYCKWHNSGSHSTNDCKVFRQQIQVAIEGGKIKFDDSKKPMKVDGNPFPVNMVHT
CC   AGQTADRGRARGFQVNSAKIINKYQRKYDKQQEKHYEEDDDGFDPHWGSEFGIDQADVDEVEEE
CC   SAKLVLSPEQAVFEKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGXAVNLMPYATFRKLGRNA
CC   EDLIKTNMVLKDFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIP
CC   STMHQCLIQWQGDKIEIVPADSQLKMENPSYYFEGVVEGSNVYTKDTVDDLDDKQGQGFMSADD
CC   LEEIDIGPGDRPRPTFISKNLSPEFRTKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLPIKPG
CC   VRPHQQPPRRCKADMLEPVXAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFRDLN
CC   KATPKDEYPMPVADQLVDAASGNKILSFMDGNAGYNQIFMAEEDIHKTAFRCPGAIGLFEWVVM
CC   TFGLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRKYGLKMNP
CC   TKCAFGVSAGQFLGFLVHERGIEVTQRSVNAIKKIQPPENKTELQEMIGKINFVRRFISNLSGR
CC   GACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADAIEIMGDSLLGIFGRQCWRIVSDIIRG
CC   VKIVRSLEQFSERRRRL.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ATLANTYS-I_OS2p"
FT                 /translation="MKVVNRPSVTEAEFPRLEPIVEDDGEERTHRRCMSYG
FT                 EYASTPTDAGAKLSAELLKDWFCSFYEGFQKDARVWPHQGTSRCRQEKENQ
FT                 IIGCEYLGSSSKEKDQVKKTKPTDDLPALDPSIEQALDEEEIEDDVDQAAA
FT                 EPPPPPSPPVQQSSSDQTPSAVGSHHIEEEEQPAAPAIPPHVHKQVYKEEL
FT                 GSIHDKPSDKTTMLRPTEYAIAEDNQKFSA"
XX
SQ   Sequence 10724 BP; 2957 A; 2002 C; 2738 G; 2985 T; 42 other;
     cgcttttggc acgcccggtg ggaccgataa gaagtcagcc aacaattctt cctcatggcc        60
     gagaaaccac caccatcacc atcctcggct agcccaggct ctgttaaaga aaagatccag       120
     aagttgggat tgactgacgt caatgaagga aacgtcgtgc ccatcgatcc agagaaattc       180
     acacctgagc agaagaaaga ttttgaagca atgttgcagc aagcacggga tcagttcttg       240
     aactcattca tgcagacccg caagggaaca cttgttcaga agtataaart aaaggtagtt       300
     gctgatgatc ctgggaccag ttcttctaaa gatggagaag ggaaacaagc tccagatggc       360
     tcggctcaac cgagtgacaa aggtgctacc gacggttctc taggaaatca aggtgacaay       420
     tctcaaggag tccatggagt tcaaggtgag ggtgcatgga gttcaaggtg atggtgctca       480
     ggggttgcaa ggaggaaatc ttaatcagaa tagtgatgcg gcacaagatt ttttcaataa       540
     cttccaagat cgggttgact atgctgtgca tcatgctttg atcaatcagt ctggggtgtt       600
     agtcaatacc ttatcaaaca tgatgaagtc aatagccgat ggttcaatag ctgagcatca       660
     ggctgcaggc ccagtttatt tgcaaggagg tgtctttcca aattatcggc ctttgatcac       720
     cgatgttcag ccatctattc aggcagttcc ccccgttgca ccatcagctc agccgacggc       780
     gccggcatcg actcccttac ctgctccatc agcattggca ccaggccagc tggtgaaccc       840
     tcggttgtta atgagagagc agccacagca tagtgggcag gttgtgaatc ggctgacgca       900
     agatcaggtt gctgccatgt ttctgccgcc tcaacctact gttgatccaa tacagcagca       960
     gccgattcag cagacacccc caattcagca ggttgtacaa ccaatccagc aacaggtcgt      1020
     gcaaccagtt cagcaaacgc caccaaggca gcagcctctg cagccgattc agcagacgcc      1080
     gttaagacag caaatcgttc agccgattca gcaccaaggy tcaatgagcg catcggccgg      1140
     gtttgcaacg cctggtggtc agcctgtaca acaattttta aatcaagttg tcccagaaca      1200
     cttggttcac caygtacagc cggatggcac agtaatgcct caagttgttc ctgagcattt      1260
     ggtrcgtaat attcagccga accttcataa ttaccaaggg ggcaacttga attatcaata      1320
     tcagcctcct tccccgcaag cccaatatca gccaggggga ttggctcaac ctcagtttgc      1380
     gtctcagtac ggtcagttcg agcccatgca acaacagtca caaggagcag ctcagcaacg      1440
     accgtgggcc gatgtgattg ctgatgtaat gagggaacag tttgggctta aaccaaaaga      1500
     gactggaagc ttgtatcggc agccttaccc tgagtggttt gagagagttc ctctccccaa      1560
     tcggttcaaa gttccagact tctccaaatt ttcgggacaa gatggtgtgt caacttatga      1620
     gcacattagc cgatttttag ctcagtgtgg tgaagcatcg gctgtrgacg ctctgagggt      1680
     taggttattc cggttatctt tgtctggatc ggcttttact tggttttctt ctttgccata      1740
     tgggtcgatc aatagttggg ccgatttgga gaagcaattc cacagctatt tctacagtgg      1800
     ggttcatgag atgaaattat ctgacttgac agcgattaag cagcggcatg atgaacctgt      1860
     gcacgagtat attcagagat tcagggagat gaggaacaaa tgcttcagct tgagtttaac      1920
     tgatgcccag ttagccgatt tggcctttca gggtatgatt gctccgatta gggagaaatt      1980
     ctcgtctgaa gactttgata gcttgtcaca tctgatacag aaggtaacct tgcatgagca      2040
     taggtctgcg gaagctagga aaarctctaa gaaggttaat catgtttgtc cttacatgta      2100
     tgggtcggat gatgatgagg atgattctga aatagctgca gccgaatggg tgaggagtaa      2160
     aaaggtcata ccatgccaat gggtaaagag ttctggaaaa gaggagaagt atgactttga      2220
     tattactaaa gctgacaaga tttttgattt gctactccga gagaagcaaa ttcaacttcc      2280
     tgctggtcat acaattccat cggctgagga attaggcaaa aagaggtatt gcaaatggca      2340
     taattctggg tctcattcta ctaacgattg caaggttttt agacagcaga ttcaggtggc      2400
     cattgaggga ggcaagatta agtttgatga ttccaaaaag ccgatgaagg tcgatggtaa      2460
     tccttttcct gttaatatgg tgcatacagc tggccaaaca gccgataggg gccgtgcaag      2520
     gggttttcag gtgaattcgg ctaagattat caacaaatat cagaggaagt atgacaagca      2580
     gcaggagaag cattatgaag aagacgatga tggttttgat cctcattggg gttgtgagtt      2640
     ctttagattc tgttggaatg aaggtatgag gttgccatct atcgaagact gtcctgggtg      2700
     cagtgatatt gccgagagct caagccgatc atataatagg ggcaatcggc taaggcagac      2760
     aagagttcct gttcatcaaa gattgggtcc agtgaatcaa gatcgtggcc aagaggacaa      2820
     tgaaatcagg aagactcaat ggtgtccttc tggtattttc acgaagaatc agaagagaag      2880
     ggttcaaaga ttgaggaaca gggagcgctt tcaggaggty gaacaagaaa ttaatcatcg      2940
     gctgaagaaa gcaaagccga ggcaggagtg gcgtgttaag aatcaggttc ctgtagccga      3000
     tgatgttgca gccgatgagg caaagaggtt ggcaaaaggg aagagtgttg tgacggcacc      3060
     agttaacatg gtytttacct tgccagccga attcgggatc gatcaagccg atgtcgacga      3120
     ggtggaagag gaatcggcta agttggttct gtcaccagaa caggcagtgt tcgagaagcc      3180
     tgaggggaca gagaatcggc atcttaaacc attgtatata aatggctatg tcaatgggaa      3240
     gccgatgtct aagatgatgg ttgatggtgg ggcygcggta aatttgatgc cttatgctac      3300
     gttcaggaag ttgggtagaa atgccgagga tctcatcaag acaaatatgg tgctcaaaga      3360
     ctttggtggc aatccatcgg aaaccaaagg tgttctaaat gtggagctga cagtcggcag      3420
     taagactatt cctaccacgt tttttgtcat cgatgggaag ggttcttaca gcttgttgct      3480
     tggaagggat tggattcacg ccaattgttg cattccttca actatgcatc aatgcttgat      3540
     tcagtggcaa ggcgacaaga tagagatcgt gccagccgac aggtcagtta atgttgccag      3600
     tgccgattta gctctttggg agatggatgg ccttgattgt ttatctggaa aagtttggga      3660
     tggagatttt ctaaaagtgt ccgattctga tatacagcca attgaagatg gagaacccaa      3720
     gctattattt tgagggcgtc gtggagggtt caaatgtcta caccaaggat acagtagatg      3780
     atctcgatga caagcaaggt caaggtttta tgtcggccga tgatttggaa gaaatagata      3840
     taggtccagg cgatcggcca aggccgacat ttattagtaa gaatttatct ccagaattta      3900
     gaaccaagct gatagagctc ttaaaagagt ttagagattg cttcgcttgg gagtattatg      3960
     agatgcctgg actcagccga tcgattgttg aacatcggct acctatcaaa ccaggggtta      4020
     ggccacacca gcaacctccg aggagatgca aagccgatat gcttgaacct gtcaargctg      4080
     agattaaacg attatatgat gctggtttta ttcgtccttg ccgatatgct gagtgggttt      4140
     ctagtatagt tcctgttatc aagaagaacg gcaaggtcag ggtgtgcatt gattttcgag      4200
     atttgaataa agctacaccg aaagatgaat atccaatgcc agtagccgat cagctggttg      4260
     atgctgcgtc agggaacaaa attttgagtt ttatggatgg aaacgcagga tataatcaaa      4320
     tttttatggc tgaagaagat atccataaga cagcttttag atgtcctggt gcaatcggct      4380
     tatttgaatg ggttgtcatg actttcggct tgaagagtgc tggagctaca tatcaaagag      4440
     ccatgaatta tatatatcat gatctaatcg gctggttggt tgaagtctat attgatgatg      4500
     tggttgttaa gtctaaagaa atagaggacc acatagccga tttgaggaag gttttcgaga      4560
     gaaccagaaa atatggcttg aagatgaatc cgacaaaatg tgcttttggt gtatcggctg      4620
     gccagttttt gggatttctt gttcatgaga gggggattga ggtaactcaa aggagtgtta      4680
     atgcgatcaa gaagattcag cctccggaga acaagacaga attacaagag atgatcggca      4740
     agataaattt tgttagaagg tttatttcta atttgtctgg aaggttagaa ccttttacac      4800
     cattgttgag attgaaagcc gatcagcagt ttacttgggg ggcagagcag caaaaggctt      4860
     tggataatat taaggaatat cttagctctc ctcctgtttt gattcctcca cagaaaggaa      4920
     taccttttag rttatattta tcggccggtg agaagtcaat cggctcagtc ttgattcagg      4980
     agttggaagg aaaagaacga gttgtatttt atctcagtcg tcggctcttg gatgcagaaa      5040
     ctagatattc ccctgtggag aagttatgct tgtgtttata tttttcatgt acaaggttga      5100
     ggcattatct actgtccaat gagtgtactg ttatatgcaa ggccgacgtt gtcaaataca      5160
     tgttatcggc tccaatattg aaaggaaggg ttggaaagtg gatattttcc ttaactgagt      5220
     ttgatcttcg gtatgagtca ccgaaggcga ttaagggaca agctatagcc gattttattg      5280
     tggaacatcg tgatgattca atcggctcgg ttgaaatagt gccatggact ttattctttg      5340
     atggatcggt gtgtactcat ggttgtggta tcggcttagt tataatttcc cctagggggg      5400
     catgtttcga gtttgcttat actattaaac cttatgcgac taataatcaa gctgagtatg      5460
     aggcagtgct caaagggttg caattactca aggaagttga agccgatgct attgaaatca      5520
     tgggggattc tttgctggta atcagtcaat tggcaggaga atatgaatgc aagaatgata      5580
     cattratggt ttataatgag aagtgccaag aactgatgaa ggartttcgg ctggttactt      5640
     taaagcatgt atctcgagaa caaaatattg aagctaatga tttggcccaa ggggcatcgg      5700
     ggtataagcc gatgatcaaa gatgttaagg ttgaaattgc agcaatgaca gccgatgatt      5760
     ggaggtatga tgtgcatcaa tatttacata atccatctca atcggcttct aggaaattaa      5820
     gatataaggc gttgaagtat actctattgg atgatgagct ttattatcgg acgattgatg      5880
     gagtgttact taagtgtttg agtgccgatc aggctaaagt tgcaatcggc gaagttcatg      5940
     aaggaatttg tggtactcat caatcggctc ataagatgaa gtggttactt cggcgtgcag      6000
     ggtatttttg gccgacaatg ctggaggatt gtttcagata ttataagggg tgtcaagatt      6060
     gtcagaagtt tggagcaatt cagcgagcgc cggcgtcggc tatgaatcct attattaarc      6120
     catggccatt yagaggttgg ggaattgata tgatcggtat gataaaccca ccatcgagta      6180
     aaggacataa gtttatattg gtggcgactg attatttcac caagtgggta gaggcgattc      6240
     ctttgaagaa agttgattct ggggatgcaa ttcaatttgt tcaagaacat ataatctacc      6300
     gatttggtat tcctcaaact attacaactg atcaaggttc aatcttcgtg tccgatgagt      6360
     ttgttcagtt tgccgatagc atgggtatca aattgttgaa ttcttcacca tattatgcac      6420
     aagctaatgg gcaggccgag gcatctaaca aaagtttgat caaattgatt aagcggaaaa      6480
     tttctgatta tcctcggcaa tggcatactc ggttggccga agcattgtgg tcttatcgga      6540
     tggcttgtca tggatcgatc caagttcctc cttataaact tgtttatgga catgaggctg      6600
     ttttgccatg ggaagttaga atcggctcta gaagaacrga rttgcaaaac gatttaacag      6660
     ccgatgagta ttataacctt atggccgatg agagggagga tttggttcag tcacgattgc      6720
     gagcccttgc aaaggttacc aaggataagg aacgtgttgc tcggcattat aataagaaag      6780
     tggtacctaa agatttttcg gaaggtgaac ttgtatggaa gttgattttg ccgattggwa      6840
     ctcgtgatag yaaattcggc aagtggtcgc cgaattggga aggaccgttc caaatttata      6900
     aggttgtgtc taaaggagca tatatgttgc aagggcttga tggtgaagtt tatggacgag      6960
     cgctcaatgg caaatacttg aagaaatatt acccaagtgt ttgggttaac gcatgatcgg      7020
     ctagtgttgc cgatgcatga cagccgatgt gtttacatcg ccttgagatg gccgatattg      7080
     ttatatcgcc cttagttgtt tttcatattg taatcggttg tggtttgccg atgtacaatg      7140
     gccgatattg ttatatcgcc cttagttgtt ttataatttt atcaatgctt ttgacattgt      7200
     aaaattaggg gggcacatat atatacaaaa tgcaaatttt gcaaatttag aagttatatt      7260
     aatcggcaca aaggattgtc aagacagtaa agtattagag tatcttagcc gattacaaaa      7320
     atttctaagt cctattacac aaaagttatt gagacaagta ttgctggata gccgaaatag      7380
     ccctttgcct aatttgttct acttcttcaa tggcttgggc atcttgagca tcagttccag      7440
     ggatgacttt cagggacttg gtcagrtcag caacattctt gatagccgat ttgagccttg      7500
     ctttttgttc ttcgatagat tttgggagat cggctagctt tttgtgctcc atatccagct      7560
     cagcattgca ttcttcaagt tgtgccaaga gctcaatctt gcgagcttcg agccgatcaa      7620
     tattggattt gatcggacct tcagatagct gatcaagttt ggmtttttct tcatgcacaa      7680
     gctgccgatt ggcttggatt gtggcttcaa tctccttgcg ctcacggcgt tcggctagtc      7740
     ttagcttggc tttttccagc ttgaattgat gttgctcaag ataaacggct ggagttagga      7800
     catcggctaa ctcatctggr attagagctt gaacttcatg cagccgtgtc ctaattgatc      7860
     cacagtcaac caccaagcta tctagagatg akgcttctag ccgatgagag atatcttcaa      7920
     gtgttttctt cacatcatca gataagggag ctagagcttt gcttgaagta tcttcttctg      7980
     cctcatcaag ataatctttg atgtcaaaag agaagagatc ggctaraacc tgcagagaca      8040
     atttcagaaa ggttaagagy taagtaaata tagccgatct aaattsttgm gwcaaaggaa      8100
     aacttactgg gatagcagga gcagctggtt gttcttcttc ctcaatatga tgactcccca      8160
     cagccgatgg agtttggtca cttgatgatt gttgtacagg aggagaagga ggaggaggag      8220
     gctgtaaaga gacaagtgtt agacaaaatc ggctgaaata attaataaaa attaagaata      8280
     tcttactggt ggagctggtt tgagaattgt tgctgccgat ttcttcttca cagcagtttt      8340
     cttcttctgc aactacaaaa tctatgagta atcggctgaa aaaaaaataa ttataaaagg      8400
     gatcaaagag agatgcttac tcttgaaaag tgagcggggg cagaaggagt tggaggtgtt      8460
     tgcttgggyg aagccgatgg tgttctttct gtatcactta cttcggctgc agcctgatca      8520
     acatcatctt caatttcttc ttcatccaga gcttgttcaa tggatggatc caaggcaggc      8580
     agatcatcag ttggcttggt tttcttgact tggtcttttt ctttggagct agagccaagg      8640
     tactcacagc cgatgatctg gttttccttt tcttgcctgc atcggctggt tccctgatga      8700
     ggccttgaag gagagttgaa gtcttggggg catgatagcc gatgacaggg ggagatagtc      8760
     cacctccatt aggaatcaga cctggggcat attcaatgtt cctgccactg ttgctttgat      8820
     gwggagggga ggattctgtt gtctgcaaaa caggagaaag attagtcaag aatgaatcgg      8880
     ctaaccagtt tataaattta gtgatgacaa agtttacctg gggtatgaca tcagggaata      8940
     gatctgtcat atacattgaa gccgattgat gaaatagatg cagcttccat tcaccccacc      9000
     atctgtcaaa gtttttgctc ctgaatcctg ccaactcaat attgtcaatg ctgcctagag      9060
     ggggtccttg gaggttaagc agccgatcca tcattagagt tgatgaaatt tctcctcggc      9120
     attggatctt gtcggcaaag aataagccga ttgggagttg gcccaatcca agttgtctag      9180
     ctgarctcat tgggtgataa aaytcgtagg agacttggat gtttcttcct tgatgaatgc      9240
     cgacaggaag gatgcatggg ctgattgcag ctgtgaagac ttccctggat ttttgatatc      9300
     tttcatgatt gatgtcttca aatctgaagt ctgatggrag ttcaaggtct gctgagtctt      9360
     cataaagaaa ccaaactcga gcatctttct gaaagccttc ataaaagctg cagaaccaat      9420
     ctttgagcag ctcagccgat agctttgctc cagcatcggt tggtgtggat gcatattctc      9480
     catatgacat gcatctgcga tgagtgcgtt cttctccatc atcttctaca atcggctcta      9540
     gccttgggaa ttcagcttct gttacagatg gccgattgac aactttcatg actatcaggt      9600
     ttaaccaggt ttgcagcagc caccatggtc cacctgctcc aactactgag ccgacggcta      9660
     tcttagccga tgcattgttc aacatttggt atagatagcc gagaaggatt ttgcccaaag      9720
     gaaattgttt ctttgattct aaggcttcgg ctacaaattg ccaattggtt gtagggccac      9780
     agctggatcc acagaagaga aacttttcta gccacattag caagaaagct acatgctctc      9840
     gaggagtgac aggcccttgg cccatatatg ccgctacata rccagaccaa cctcctatgc      9900
     ttttggtctt gaagtcaaat tggttcttgg tgttcatact catagggtta gccgatgaag      9960
     ttacatctaa tccagtratc atgatgatgt cgatcaaagt tggagtcatc ggcccttggt     10020
     tgaacaagaa ggcattgatg gtgttggacc agaaataggt ggcrgcwgcc atcagaggtt     10080
     catccttagc agaattggct atggtgaggg caagtgcttg gccgattcca atttcatccc     10140
     agtgaacttt cttactagcc gatacgcgtt tgtaccatgt ggtccagcty ttctcagggt     10200
     agtttctcga gagatggcca agacttgaag gtattcttcc agtgacccag gttagggttg     10260
     gctagtctaa aggggatcct gttggtttca ccaatgatga aatcagtggg gtcaagattg     10320
     ccgattgggc caagaaagta gtggttttcg tgcgataggc tgggaatcgc aactaggttg     10380
     gaaaggtgct acaaatccaa aggaatcgag aagaagaaaa caaatgagaa agagaaaatc     10440
     gatctgatgc taagaaargg gatctagccg atgagaactt acctcagcgt actcggcyga     10500
     tggcgcagca gatgggctgg tggaagacga catcgccgca ggcggagatc tggccggaga     10560
     tgaagtcgcc tgggratcgc ctttgcgtcg gaggaatcgc cggagagaga gaggacaaag     10620
     tttcgcttga gcggtgaaaa cggaagtcac ggtgtgagat ttctcgaggg taacggttag     10680
     tatttaaagc actagaataa cggtcggaaa acggcaagtg cgaa                      10724
//
ID   ENSPM2_OS   repbase; DNA   ; ORY   ; 10580 BP.
XX
AC   .
XX
DT   24-MAR-2005 (Rel. 10.02, Created)
DT   29-MAR-2005 (Rel. 10.02, Last updated, Version 1)
XX
DE   Rice En/Spm type autonomous DNA transposon, consensus.
XX
KW   ENSPM2_OS; En/Spm superfamily; TIR; Autonomous DNA transposon;
KW   transposase.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10580
RA   Gentles A., Jurka J.;
RT   "Rice DNA transposon ENSPM2_OS.";
RL   Repbase Reports 5(2), 37-37 (2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 10580 BP; 2892 A; 2256 C; 2653 G; 2778 T; 1 other;
     cactagtaca gatcctctca tctgtgacgg cccatcacat gcctggacaa cgtgggccgt        60
     cagaacgaag tcatctcaat cgggcctaaa tttttgccgt tgtagatgta ctcgtcgggg       120
     tgcatattcc tatagcccgt caccgatgac actcatctgt gacgggctcg aagttaggcc       180
     cgattgagat gacctccact atctcaatcg ggcccaaata ctgagcccgt cacagatgag       240
     tgtcatcggt gacgggctcc aaagaaggcc cgattgagat ggccttaatg cccatcaccg       300
     atgactctta taggtgtcgg gcttctattt gtgcccgtta gagattagtg tgcgcccgtt       360
     agagatgaca tttttttggc ccgattgaga tatactttgc acactatata tactccagca       420
     gtccgttgtc tgtagtttat cccactgttc actattttgg tgggaggttg aagggggcga       480
     atttttgtaa tttttttgca aacaaaaaca ggaaaatcat aaaagtaagt aaaagggtac       540
     taaacatttc ctattaattt agtagtactt atgttatgag atgttaacta atattttgtt       600
     cattgttcag cgatggatcg aagttggatg tacacgactg gcttgaggcg tcagtacaag       660
     gagtatagag atggcgtatt aagttttatg aaagccgcag aggaggatag gataagaaga       720
     aacgacaagt acatgtgttg tccatgtagc gattgcagga atgagatttt gtgggaagat       780
     gaaaaggaag tacacgctca cttgatacgc cggggattca tggagagata cacatgttgg       840
     gtgatgcatg gagagcaaga tctgggtact gatggtgcag ctgcagacgg aagtggtgca       900
     gacaatcatg aagaaggaga tgaagaagag catgacatgt ttgtcccatc tccattgggc       960
     ggtgaaatgg ttgatgtgga ccctgatatg ctgcaagaca tgttacgtga cgttgatgac      1020
     ccagctatga acgagagaga ttccatgaag ttcagcaggt tggtcagtga ctcggagact      1080
     cctctatacg caggatgcaa gccaaagcac accaaattat cagcaacatt agacctaatg      1140
     aagttgaagg ctagtagtgg atggtcagac aagagtttta cagaactttt gggaatactg      1200
     aaggacatgc ttcctcagga gaacacattg cccgagacga catatgaagc aaaacaggtt      1260
     ctgtgtcccc tagggttaga ggtccggaga attcacgcgt gtccaaacga ttgcatattg      1320
     taccacaagc aatacgcgga cttagatgct tgtcctgtct gcaaggcttc tcgatacaag      1380
     cgaaagaaga gcgcgggcga gggaaagaag tcaaagcggg gtggtccggc gaaggttgtg      1440
     tggtatctac caatcattga tcgtttcaag agaatatttg ccaaccccaa tgaagcaaag      1500
     ttagtacgtt ggcatgccac agagagaagg aatgacggtt tgctaagaca ccctgcggat      1560
     tcgattcaat ggaggaatat cgatcgaaag cacaaagact ttgctgccga ccccagaaac      1620
     atgaggatat gtttgtgtac ggatggcatg aatcctttcg gagacatgag cagttctcac      1680
     agcacttggc cagttctcat tgcgaacttt aacctcccgc catggttgtg cttcaaaagg      1740
     aaatatatta tgttgtgctt gttaatccaa ggtccgagac aacccggcaa tgacatcgat      1800
     gtgttcttgg agcctgttat cgatgacctt gagattctgt ggaaagaggg tgtggaaact      1860
     tgggatgcat atggtcagga gaacttcaca ctacgagttc tattgttctg caccattaat      1920
     gattatcccg cgctgggtaa tctttctgga caaaccgtga aaggaaagaa ggcatgctct      1980
     gactgtatgg aacatacacg cagtaggtgg ctgaagaaat caagaaagat ggtttacatg      2040
     ggtcatagga gatggctccc cctacggcac gcctttagaa gaaagaagaa aattttcaat      2100
     ggtaagaaag aacttgggtc tgcccctgcg gatttgtccg gagatcaggt acacaacatg      2160
     gtgaaggaca ttactaatga gtttgggaag aaaagaaaac gtagcaagga ggacaagaag      2220
     aggatgtgga agaaaaaatc catattttgg cggctacctt attgggaaga tcttgaggtc      2280
     cgtcattgca ttgatctgat gcacgtagag aagaatgtgt gcgatagctt gctggggcta      2340
     ttgttgaata tgcctggcaa gacaaaggac gggttgaatg cgcgtctcga tctacaggag      2400
     atgaacattc gcagtgaact tcagcctgtt acagatgaga agacgggaag agtgtacctc      2460
     ccaccagctt gccacacatt gtcgaaggat gagaagatcg caatgctatc atgtctggca      2520
     gatattaaag ttccttcggg ctattgcgcg agaataagta agtacgttaa attggaggat      2580
     cttaagctgg ttggaatgaa gtctcacgat tgccacgtgc taatcacaca gatcttgcca      2640
     gttgctataa gaggcattct accaccacaa gtccgtcaca cgatccaacg gctttgtgcc      2700
     ttcttcaatg caatcggtca gaagattata gatccagaag acctagatgg gttgcaggcc      2760
     gatattgtca gtaccctgtg tcacttggag atgtattttc cactagcttt cttcgatatc      2820
     atggttcatc tcactgttca cctagtgaag caaacaaaaa tatgtgggcc agcttttatg      2880
     agagaaatgt ggccattcga gaggtacatg ggaattctga agtcctacgt tcggaacaga      2940
     gcaaaaccag aggggagcat cattgaaggt tacacgaccg aggaagccat tgagttttgt      3000
     atcgattaca tggccgagac tgatcctatc ggagttccta cgtctcgcca cgaaggaagg      3060
     ttggcaggtg tcggcacaac tggcagaaaa agaattgttc ccgatcaagc ttcctacgcg      3120
     caggctcatt tcgcagtgct gcaacatatg gctgaagtaa ccccatactt tgaggagcat      3180
     ttagcgaagg tccgacagga caatattggt cgatcagata tttggatcaa cagagaacat      3240
     ggtgctcgct tcaacgaatg gttcaaggat cgtgtagcac ggtcgaccga tggcccaagt      3300
     gagatattac aaaggttggc aaggggtcca tcttgggatg ttgacacatg gcaagggtac      3360
     gatatcaatg gatacacatt ttacaccgtc acacaagatg agaaaagcac agtgcaaaac      3420
     agtggagtcc gtatagatgc atatcaggat caggctggat cgagcacata ctatggccgc      3480
     atagagcaga tatgggagct gaactatctg aacttcaaag tccctttgtt tcgttgcagt      3540
     tgggtgaata tccgcacagg tgtcaaggtc gacaaggaag gcttcacatt agtggacctg      3600
     gccaaggttg gatacgcaga cgaaccattc gtactagcga agcaggtcga acagattttc      3660
     tacataaaag accccgcaaa caagaagatg cacgttgtta gggatggcaa gcgaaraatt      3720
     gtgggggtgg acaacgtcgt cgatgaagaa gaatacaaca agaatcttca tgtcagacct      3780
     cagatcgacc ttgacgatga tcccgaagac gaagtggctt acgttcgttc agaccattcg      3840
     gaaggcatat cactgtgaat gatgtattta atttgtattg gagccttaat gaatgaattg      3900
     catatgtttc atgccattcc agttaaaact ctttgaagaa atggatttgt taattatgtg      3960
     gttttaaaaa attatacttg ttattttaaa ctatatgtga gatagccaat tgttaattat      4020
     atgaatttaa aaaaagtaat atgaatttta aactatatgt gagaaaggca attgtcaatt      4080
     atatgaattt aaaaaattaa taggaatttt aaactatgta aataagacat ttgttaatta      4140
     tatgtgataa atcaaatgta atagcaattt taaatcgggt agaagataat tataaatgat      4200
     ttttataact taaaaatatt ttaataagtc atctgtgacg ggctttagta ctatgcccga      4260
     tagagattat tccatctcta tcgggcttag ttctaatgcc cgtcacggat aggtatcatc      4320
     cgtatcgggc agagtactaa cgcccgtcac ggatgagtgt catccgcatc gggcatagta      4380
     gtctgcccga tagagatgag gattgactag ggtttactta gtcaatcctc atccacgggt      4440
     ccttatccac cgccgacgcc gcctctcact ctctcacact ctcactctct cagatccacc      4500
     gcctcctccg cgcccaagac cgccgccgcc gccggcctcc tctccaagtc cgtgtcctcc      4560
     atgcccaaga ccgccaccgc cggcttcctc tccgcctagt cctcaagacc gacgccgcgg      4620
     ccgtttcacc gaccgccgcc gcctcctcgt cctcaacgct gtcgcctcct cctccctcga      4680
     agatccggcc tcaccgacca cggccgcctc acatcctcct ctccagatct acgcccggcg      4740
     gccgtcgacc tcgtcctagc cgccgcgtcg acctcctcca cgccgctacc tcctcccggg      4800
     ccgctcaaga tccggcctcc ccgacggcca ccgcctccct ccacgccgtc cccgagcccg      4860
     gcgccgccca agaccgccgt ccccgagccc ggccctccct ccacgccgtc cccgagcccg      4920
     gtgccgccca agaccgccgt ccccgagccc acgtcaacct cctcaccgag cccgccaccg      4980
     tgcaaggtag gtactcctca ccgatgatga tgcataatgt gatgatttgc tgtgtacatg      5040
     ttatatgtga tgatttgatg attcgatgat aatgtttaaa ttcgataatg tgatagtgcg      5100
     attatttgtt gattcaatgt ttagatgcta atgtctacat atgatgactt gtgctagtga      5160
     tgaatttttg tgttagctag tgatgacttg tgcattttta tatgtgttag ctagtgatga      5220
     atttttatat ggctgtgatg acttgtgcat ttttatatgt gttactagtg tgaattttta      5280
     tatggctgtg atgacttgtg catttctata tgtgttagct actgataaat ttttatatgg      5340
     ctgtgatgga tgaatttgtg aatttggggg agaatgggat gtgatgaaaa ttgtttagat      5400
     gtgggctgtg atgatgaaat attgtgggct atgatggatg aatggccagt gatgattgct      5460
     caagaacata ccatttttgg gatattttgg gtccaatggg atggatgaat tgatgtgggc      5520
     tgtgatggtt gaattatttt gggggaaatg tgagttttgg tatgtttttt atggctgttt      5580
     ttctatggct gtttttttac tgcataagga cagaccctct acagttgttc ttatatagtg      5640
     tttgcaaaat ttttgggata ttttgggtcc aatgggatgg atgaattgat gtgggctgtg      5700
     atggttgaat tattttggag gaaatgtgag ttttggtatg tttttattac acttgttcat      5760
     tttatttggg ggagtggcag tatgggatgt tttgcaaaat ggatgcattt ttgggccggc      5820
     ctcactcttg ttcttgttta ggtttaaatg tgggttttgc ataagaacag accatataca      5880
     cttgtgattt ttgggttttt tataagaaca gccatctaca cttgttctta tatggtgttt      5940
     tttttttcat aaggacagac cctctaactt gttcttgttc tttgcaaaat ttttgggata      6000
     tttttggtcc aatgggatgg attgggttgt ttgaatatta gctgtttctt tttttaagga      6060
     cagaccctct acacttgttc ttaatttctt ttgggggtgg ggcagttgca aatgatgata      6120
     attgaagcat aatttctgag caaaactgag gccaaactta ttatatgtca tgacttgtgt      6180
     ttttttaggt aaaaaataat atatatgtga cttgtgtata tgggcttttt gggtcatttt      6240
     gagggaaatg ggatggatat gcatagaaat ctgttattaa atgaagttac tgaaattatg      6300
     gcatttagga gaatacgaag tgtcctggtt gccaaatctg gtttggtcgg gttactgcct      6360
     gcacggtacc gaccaagaca aattggtaaa cagaacattt cgttcaaata caacatttct      6420
     agaaatctgg agtttgctga tgataacgtt agggatcttg gataggaagg gttttggttg      6480
     cctgtgtgtt ctatctgcat ccgcctcgtc agcagatatg tagcatccat attccttagg      6540
     gccggagcag acgggatctc gacctcgaca tccatatccc actagaactt gctaccgttg      6600
     ccactatctt atgttagtga cattgatagc aagttcgagt gggatactga tgtcgaggtc      6660
     gagttcccgg ctgctccggc cctattgagc atggatgcta tggttccgtc gacgaggcga      6720
     acgcaggtag gagatagagg tatatcaaac cataagagaa tgtgtgtaga tgcaattttg      6780
     tgtttaaaaa gtactttctc cccgtacaac agtgacatag gacatgtcgc agcaaggcga      6840
     accgatgtcg acgaccacta ctgggactac atcgagccga atcctaggac ccagaataag      6900
     attcctaagg aagtctacac cataacagag gtggacgatg ttggatatcc gacggctccg      6960
     acgaaagctg tcaaaaagtt ccctacgata tgcggagtcc tagggaggcg gaacttcact      7020
     attctgaagg accacatcga tctggtccct caagaagaaa aagaagaggc ctggaggcag      7080
     ttcaaggaaa gcttccgata ccctacagag gccgaggcag gactgaagcg gcaggctatc      7140
     cgcaagatgg ggaattgttg gaaaaatttc aagacaacgc tggtcacgga gtacgtcctc      7200
     aaccccgccc agccagaacc atttgggaaa tacccattca tcacccaacc cgtgtgggat      7260
     gagttccatg cgccaaatca acgaaagagt ctcgggaaaa aagccagacc taccgtgatc      7320
     tgcaggcaag gaaccttcac ccgcaccggc tggcaccgga ggctacgcgg ggaaacaggc      7380
     agaatgggac aaggaggatg aagctgcagc ggaatctaac accccgcaag tgcttgctga      7440
     tatcccggtc cagcgggcaa ggaactgggc aagggcaagg gtgaagaaga atagtgacgg      7500
     aactctttcg ttcccaaatc ccgaagatca agcggtgtac cagaaaatcg taagttgaac      7560
     acatagaata agtttcatta tgttgtatct tgttcttcgt ctaacgcgtc ctaactgtac      7620
     cccaggtcga actgaatgct gagagacagg cctcccaaga ggtctgctca caaaaacgcg      7680
     aggatgacat cctcacgaaa gcgttgggaa agaagaacac cgtggacgaa caaggggcat      7740
     tggctccaat gttccatgga agtttgggtt tccccaatac gcgtggcagt acaagaagca      7800
     caagctttcc aaggcgcaga aagctgcacg cattaaggcc caacttcggg aggagcttaa      7860
     agaagagctt agagaagagc tcactgccga gctgttaggt atggaggctc ggatggaggc      7920
     acgcatcagg gataggtcga ccgatgccac tcccggtccc tagtacaagt gagccccacg      7980
     cagaggcgta gcagctgcgc atcaactgag gctccggcag aacagcctga aggccccgcc      8040
     gcggtggacc acataacggt aaaaacaact taataacgca tatattatat tagcaccaca      8100
     atacattgca acatatacta aggacactaa tgaatcatcg caggaaccca catcgtgtac      8160
     cctagtcgtt agggtgacac caggatttgc aattcctgcc gcagagggtc aagcattcaa      8220
     gcctacccga gacccgagtg catggggcgc agctgcaagc cggcaatgcc aaagttcagg      8280
     tggacttagt gaagcccgat tgggttggct acactatccc acacccacct aatgacgaga      8340
     ttctgaccct tggggctgca cgtgggacct ttattcaatg gcccaagcac agcattgaga      8400
     tcaatataac tccaaggcca gcgccaagtt ctcgtccgcc gccgacgcgt ccccatcaaa      8460
     ctgttgtatc tctccctcct gccgttgaac aaagagatga agatctccaa ttacagtatg      8520
     atactgattt tggggacgag gtatggaggt tgacagcagg ccgcacctcc cccctcctgc      8580
     caaaaggagc aagagggcga aatcttctcc acccaagctt gacacacgca gaaaagctgc      8640
     tggaacggga gaggaaaaat aaaggtgcca ttagccccaa agaagcttga tcttggcaag      8700
     gcgccagtag ctcctccaaa gcctcagcaa attcacattg ggcatgccat tggtcggaga      8760
     cgatgcctta ttcaagatgg gccctgcatg caaggagttg cacggtacta catggaaagt      8820
     ccaacgcaag gaggaagaat agagagacct ccatgttggg ccagcacgat ggtcagccgt      8880
     tcctcgggcc tactgccttc atcgccgtag acttcaaaga tctatgggac ctctacaggg      8940
     tgcgagcgat cgacaccaac ctccttaagt gctactcctt gtaagtattt cttggtagcg      9000
     atatggtagt gatgtccata aattacgctt accctgactc ttgtcttgct cgtaggttaa      9060
     cctggaagca tgtccatgta aagcacccca tgttgcctta ctcgatccag ctgtcgtcaa      9120
     cgagacaacg ctgaaaaacg atcgagcaaa catggtggct atatcaagga ctgcttattt      9180
     gcccgtcaag acaaggactt cattatgtgc gcctacaatc aacagtaagc gtgtaccgta      9240
     cttatactca aatactcaac gcgtacaact gtagtatgta actggcaatt taataatttc      9300
     gcaggcgaca ttggattctt ctggtaataa cgccgaagtg gagtttggta cactacctta      9360
     actccaatat caagccagaa atatacgatt ggtcggccat cgaatctgcc ttgaacgagg      9420
     ctgggaccaa tacgtggcaa gaggcgggag gcataaggat gggcatccca aactcggtca      9480
     caagaaagac ttcccaatac gtcaacaagt tggcgaccag tgtgggttcc atgtctgcca      9540
     taacatgagg agcttcgcag aaaaggtgac attgctcgac cctgaggtgt gtaattcaat      9600
     tgtttataca cacataggac gacaaattta caagtatgta gactaacttg gcgccgaaca      9660
     tgcaggaatt tatttcaagg attccggaaa tcaacttcga aatcattaga gaggagatag      9720
     cacaattcat actagatgat atcttgtcac cgaaagggat gtttagagtg aagtcctagg      9780
     tagctcgtct ctgtatatac ttgcatttct agttacatat aaaattgttc caatttataa      9840
     cttatttttg caggttttga tgcatgtcgg cggtttggag agaaaaatgg atgtgaatga      9900
     catatatgtg aatgggttgt ggatgtgaat gtatatgtgt ttgattttgt gaattggctg      9960
     tgctgtgatg gaatatgaat gtgaattgct gatgtgatgc tgggaatggg tctatatgaa     10020
     atggctgtga tggaatatgt gaattgatgc tgggaatggg acttatatat atgcttctgt     10080
     catttttgca gcgggcatgg ctagcaaagg cctgaggcta gccaaaaaga caaattttat     10140
     ttttttgttc taaactcatc cctgacgggc atttagctaa tgcccgaaag agataactca     10200
     tccgtgacgg gcttttagaa tacacccgat agagataagt cgtccgaacg ggactagttt     10260
     gactcaacac gtggggtcaa acctatcggt gacgggctct ggctaaatgc ccgatggaga     10320
     tgactactca tccgtgacgg gcttagtggt gtgcccgatt gagattagtc atccgtgacg     10380
     gctcctatac gctggtttga ctggtcatac tcatctgtga cgggctttgt tttcggcccg     10440
     attgagataa catccatccg tgacgggctt ttgcccgatt gagatttttc ctcacatcag     10500
     tgacctttgc ccatgacggg ggccttaccc gatagtgatg atgctttcag cccgtcacag     10560
     ataagcgatc cgttctagtg                                                 10580
//
ID   SPMLIKE     repbase; DNA   ; ORY   ; 9655 BP.
XX
AC   AF172282;
XX
DT   09-SEP-2002 (Rel. 7.08, Created)
DT   09-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   Rice non-autonomous DNA transposon SPMLIKE.
XX
KW   DNA transposon; Interspersed Repeat; SPMLIKE; non-autonomous.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-9655
RA   Tarchini R., Biddle P., Wineland R., Tingey S., Rafalski A.;
RT   "The complete sequence of 340 kb of DNA around the rice Adh1-adh2
RT   region reveals interrupted colinearity with maize chromosome 4.";
RL   Plant Cell 12(3), 381-391 (2000).
XX
DR   GenBank; AF172282; Positions   55331   56056.
XX
SQ   Sequence 9655 BP; 2917 A; 2007 C; 2217 G; 2514 T; 0 other;
     cactaatata attgtcatcg cgaagtacat ttggtcccaa aaatgtttcc tttttattgt        60
     acgtgtcttg ctacggttgc taacttaata tattggctta tcttttgtga agccactaac       120
     ggcaatgatt aactgcagtg ccgacagcac ggacagatta caatccttgt agcaattaaa       180
     gcacacaatc acttgaagag agccgtacct acattttgct gctgccattt agttgcgaca       240
     tttgagaaat tagtactaaa taaaattagc taggccacca ttacactgat cactaagggc       300
     cagtttgttt tggtttatta gccttttcaa ttatgatgtt aataagctgg ccttttagtt       360
     tataagttag aacatttttc ggcttcaaaa ctcaggtgga actgaaaaaa aatgcttttg       420
     gttttgcaaa ggaattagcc taccaatatc gtactaaaac agaaatgtat cacgtgcaca       480
     cactgtccac atcaaccaag gcggtgtttg ggaataaaag agaaatgtac cacgtgcaca       540
     cactgtccag atcaactaag gtggggtttg ggaaggaggg actaaagttc cctctcacaa       600
     aaattttagt ccgtatagga gggacttatt tttcggagag aggaagtttc tcactcccaa       660
     acacccacta acattatttc cttgatatgc gtgttgtgta aagtctcaac tgtaaattca       720
     ttactatggg atttttagta acatttgtca gcaagcttca aaatttcttc aaaaaagagg       780
     ggaggtcatg ccaaaatttc tagtaaattt attttggtga ttatatacaa atcggaggac       840
     cacagaacgt cattgtaccc aggttgcgag caggggcaca aaaaattgga taccactctg       900
     aagttcttgc aatggaaggc aaaaaatggt gttagtgaca aggcatttgg cgatttattg       960
     aaacttttca agaacattct tccggagaga aacaaattgc ccgagacaac gtacgaggct      1020
     aagaagatag tctgccctct aggactggaa gttcagaaga ttcacgcatg tccgaataat      1080
     tgtatcctat atcgcggtga ggagtacgag aacctagaag cttgccctgt ttgcaaagca      1140
     ctatgataca agattagacg agacgatcca ggagatattg acgggcagct aacaaagaag      1200
     agaattcctg ctaaggtgat gtggtatttc cctataatac cacggctaag gcgtttgttc      1260
     aggaacaagg ggaatgctag aatgatgcga tggcacgctg aagagcgtca acaggacggg      1320
     atgctgagac accccgccga tggttcgcag tggcgaaaca ttgacagaaa atttaaaaga      1380
     ctttggaaag gacgtacgaa acatacggtt tggtttaagt acagatggca tgaatccttt      1440
     tggagagatg agcagcggcc atagcacttg gcccgttacg atgtgtatct acaacctccc      1500
     ccctggctat gcatgaagag gaagtacata atgatgccga ttattattca aggccccaag      1560
     caacctagta atgacatcga tgtgtaccta agaccactgg tcgaagatct taaactgttg      1620
     tggaaaaagg aaggtgtccc cgtgtgggac gaggacaaac aggaggagtt taacctacga      1680
     gcgctgctgt tcgtaaccat caacgattga cctgcactta gcaacctttc tggtcagtcc      1740
     aacaaggggt acaaggcttg cactcattgt atggatgaaa cagaaagtac gtatcttaag      1800
     cactgtagga aggttgtgta tatgggtcat cgtcgattcc ttgctgcaaa ccacccggta      1860
     cggaagaaag gcaagcactt tgaacataag gcggaccacc gtacgaagcc taaacatcac      1920
     agcgggaaaa cggtgtttgt tatggttaaa gatcttaaag tagtgttcgg aaaggagcct      1980
     ggaagccagc ctatagagag cgaagatggt cacgcggcga tgtggaaaaa gaactctata      2040
     ttttgggagt taccctattg ggaattcttg gacgtccgcc acgcaatcga cgtgatgcac      2100
     ctcactaaga acctttgcgt aaaccttctt ggcttcctag gtgtatatgg aaagtcgaaa      2160
     gatacactgg aagcacgtaa tgatctgaag tatatggaac aacgcagcga ccttcacccg      2220
     gaacgaaagg agaaaggaag ccattacttg agtccagcta gctacactct tagcaaggca      2280
     gagaatgaaa gtatgtttga atgcttggag agtataaagg taccgtctgg atactccacg      2340
     aatatcaagc gaataataag cacgaaggag aagaagttca caaacctaaa gtctcatgac      2400
     tgtcacgtgt tgatgacaca actgctacca gttgtaataa ggggtatcct tccagacaat      2460
     gtccgggcaa caataacaaa gctatgtgct ttcatgaacg caatttcaca gaaggtcatc      2520
     gatccggata gattagaagc ccttcagaat gatgtggtac aatgtcttgt cagttttgag      2580
     ttgatatttc caccttcatt tttcaatata atgacacatc tgctttgtca ccttgtcaaa      2640
     gagatcagta ttctcgggcc tgtataccta cacaacatgt ttcctttcga gaggtacatg      2700
     ggcgttctga agaagtacgt tcgtaaccgt gctcgtccag aggcaagcat cgccaaaggg      2760
     tatggaacag aggaggtcat cgaattttgc gtagaattta ttgaagacct tcgcccaatc      2820
     ggggtacctg aatcacgcca tgaagggaga ctacggggaa agggaactct cggaaggaaa      2880
     gcaataatga cggtagacaa caatttattc tgtaaagccc atttcacggt tctgcaacaa      2940
     tcttcattgg tagctcctta catcgaggag cacttggctc tagttcacgc cagaaacatc      3000
     ggttagtccg atgcgtggat tacacggcat cacattgata ctttccccgc gtggctacaa      3060
     caacatctca tgggtaacga gacgatcaac caacaactgg ccttcctggc gaggggacca      3120
     tctgggtcga tcgccacatt ccagggatat gagatcaatg ggtacacatt ctacacgaga      3180
     gcccaagaca cgaagagcac gaaccaaaac agcgttgttc gtatcgatgc catgggacac      3240
     gatggaacaa ctggcacgta ttacggtgcc atcgaggaca tatgggaact tgactatggt      3300
     cctctcaagg tccctctatt ccggtgccaa tgggttaggt tgactggtgg aggcgtaatg      3360
     attgatgaca gtgggatgac aacggttgac cttaacaagg ttggatactc ggacgaacct      3420
     tttgtccttg ccaatgatgt aacgcaagtc ttttacgtga aggacatgtc tagcaaagga      3480
     aagaagggca aagggcctga cgagccgaag cgttacgtgg ttctccaagg caaaagaaaa      3540
     atcatcggag ttgaggacaa gactgacgag gattacgatc aattggatgg gcaaccccct      3600
     ttcacggtga cgattgacct tagcatcctc ctatcaaatg aagacacccc ttactcacgt      3660
     agcgatcaca aggagggaac aatagtgagg agaaagtacg tgcggtcaac cgtcaccgct      3720
     gatgtattga cgtaattatt gtgtacacga tgtaaactat tttggatgta ttgattatcc      3780
     atataaatca atttttgtat ggcatatgtt aattacgtac aattattaga ggttttaaca      3840
     attttaaatc atgtaattgc tagttatatg cgataattag aatttttaaa agttttaaat      3900
     catgcatgtg gcatttacat atgatactta gagtttttaa caattttaaa tcatgcatat      3960
     gctagttata tgcgataatt agaattttta aaagttttaa atcatgcatg tggcatttac      4020
     atatgttaat tagagttttt aacaattaat ttaatatcgt tcatatgcta attatatatg      4080
     attattagaa tttttattaa ttttaaatca tgcatgtcgt atgtatatac atatgttaat      4140
     tacaattttt aacaatttaa tatcattcat atgctaatta tatatgatta ttataatttt      4200
     tattaatttt aaatcataca tgtcgtatgt atatacatat gttaattaca atttttaaca      4260
     atttaatatt attcatatgc taagtatata tgattattag aatttttatt aattttaaat      4320
     catatatttg cttattacgt tttatccact taatttacta cagacaacaa taatgtttcg      4380
     aagtaattgt cattaatttt tcgactttaa ataattttaa tgcattattt tctattttag      4440
     aatcacatat gtaatggaaa ttaatattaa gtgcgcttat cagtagtccc ggttcttaac      4500
     cctaaccggg tttaaaaaga atttggaaat agcgagaaaa tatctttagt cccggttgtt      4560
     gagaacaacc gggagtatct ttactcccgg ttgttctcat caaccgggac taaagatcta      4620
     ggggtgtata tattcctgat gcgcgccctc atcttctcca ccaacactta gaagtttttc      4680
     cccgatcaat ctctctcggc ttctccttcg ccgccactgc ctaggacatc cccgcgccga      4740
     cgccgccgtc gtatctagcc gttgtctcgc gcgcgtcgtc gtcgccgcct ccgccgcctc      4800
     ctccgccgcc gcatctctgg ggtgagagac gccgccgcca atgtcgtcgc cggtggcggc      4860
     cgcatcaagg tcgggttcgg catcgtcggc gcggcggagt cgtgttcggg gtccgccgcc      4920
     gcgccacgcc gatgccgcgc caccacgccg ccgccgcgcc acgccgccgc cgcgccaagc      4980
     cacagccgcg gcgccacgcc gccgctccgc tgccgccacg tgaacgaacg aagaacgatc      5040
     gtgaacggac gaaacgtacg tgaacgtgaa cgaacgaacg aacgtgaacg agaacgtgaa      5100
     agaacgtgaa cgaacgaaac gtacgtgaac gaacgaacgt acgtgaacgt gaacgaacgt      5160
     gaacctaacg tgaacgtgaa cgaacatgaa cttaacgttg tatgtgaacg tacgtaaacg      5220
     aacgaacgtg cgtgaacgaa aagtgaagtt aacaagaaca cgaacatgaa cttaacgtac      5280
     attaacgtga acgcacgtga acgaacgaac gtaggtgaac gaaacgtgaa cttaacgaga      5340
     acgcaaacgt gaaatacaat atatgttact ttgcgtttat cctaatacat ctttttgtat      5400
     gttgcggaaa agacgttgtc gtcgtcggcc ctcaagccgg agtggtagct aaccctcgaa      5460
     ggaattcgcg caggcaagtg atgtaaatat atgattgtta gatttttaat gcaattaaga      5520
     ctattagatt taatatatga cacttagact tagcatatat gattatctag gtttgtaatg      5580
     tacgacactt agacgactta gcatatatga ttacataggg tcctaatata cgacacttag      5640
     acttagcata gtataagatt attagatttg taataagact tagcatataa gattgtttga      5700
     gttagcatag ttctaataca agattattag agttttaata taagattatt agatttgtaa      5760
     ttagacttag tatataatta ttgtctaggg tcctaatata cgatacttag acttagcata      5820
     gttgactatt agagttttaa tacaatatta ttagagtttt aatataagat tattagattt      5880
     gtaattagac ttagtatata attattgtct agggtcctaa tatacgacac ttagacttag      5940
     catagttgac tattagagtt ttaatacaat attatttgag ttttaatata agattattat      6000
     agttttaata taagattatt agatttgtgt aataagactt agtatataat tattgtctag      6060
     ggtcctaata tacgacactt agacttagca tagttgacta ttagagttct aatacaatat      6120
     tatttgagtt ttaatataag attattagag ttttaatata agattattag atttgtaata      6180
     agacttagca tataagattg tgtagggttc taatatacgc aagttagact tagcatatat      6240
     gattgttagc atataagatt gttaaagcaa aaatgaccta tagacttacc aactatgtct      6300
     tgtatgaaca gatggctgat cgtgatgagg aacagatatt gtacgataca atcgcggagg      6360
     gaagcagcca gtactggaac gaagaagagg ggaacgagga tccaaaccag tacttgaacg      6420
     aggaagggaa cgtggagagg gatgcagagg ggaaccagga ggggaacgtg gagagggatg      6480
     tggaggggaa ccaggaggag gaggctagtg gaagtcaacc ctttgctgga cagaagaggg      6540
     cacgcgggca acgaggtgcc gcaaagaagc tagagggtca gcacatcata acggaagtgg      6600
     acgaagacgg ccgacctagt gccccggcgg aagcagccaa gaactacgta cgacacagcg      6660
     gttgggttgt gcgggataac gtgcctgtca gtacggtgta ctagcgcaga acaagggcac      6720
     gcagagatca tgagagcttt gtcctagatt cagagaaaga gatgttgtgg accacaatgc      6780
     tcgagacatt cacccttccc gcgggtatag aggacacagt gaaaaggtgg actctaaaga      6840
     aaatggtaga acagtttcag agcttcaagg gagatctata ccagaaatat atcctaaagg      6900
     ggcagacacc gaacttcgac acattcccaa agctaaggga tcactgggac gagttcgttg      6960
     catataagac aggtcaacaa gggcaggcga tgatggaaag aaacaaaaaa aatgccacca      7020
     agaagaagta tcatcaccac ttggggtcag gcggctatag cgtcgcgatg ccaaagtggg      7080
     aggagatgga aacaagcttg cttgagaggg gtatcgaacc ggccaccgct aaatggccgg      7140
     atcgatcgaa gttctggtac tatgctcacg gtggaacgct caacccagtt gatggctccc      7200
     tggtcttcag cgatcagata cgcgaggctg cgcgtcgact aatggacaca gtggaagcct      7260
     cttctcaggg cacgttccga cccgacagag agaaggacga gctgtcactc gccctgcaga      7320
     ctctagagca tccaggacga acacgaggga aaggggtgat tccttggaag attggattca      7380
     aggaggacat ccacacgtat aggagtcgaa tgaggagcaa gagagatacc gaggcgaaga      7440
     ttgcagatct tgagtacagg gtatcgagct acgagctcag catgcaagag gaggtggcaa      7500
     gaaaggttga tgaacgcatg gccgcacatc ggtcccatga tccccagccg accattccac      7560
     ctgcaatggt gagcccttca ggcaatcgta gcagctgcgc ctcaacgggg caggtaggat      7620
     cacagagcat ggacgctatg caaacccagg acgaaaccac ctgccccgtt gatgacatca      7680
     ctcagcggac accatgtgag ctgcatattc ccttcaagaa cttatcaata aaggtaagct      7740
     cgtagtttat agattttaga tttgtccatt ccgcaagttg ctgcttataa atgttgatta      7800
     ctaataaata acctctcacc acgtgaaggt ggcgtcgggc atggccatac caacggaccc      7860
     ttcaggtact taccactgca ggccgattct agcaggatac tccaaggtcg aaattgagtt      7920
     ggtggaaggc acatacgagg acctcgagtt ggattacctt ggaggagacg gtgagacgca      7980
     tctacgagac acaagccacg ccattatact atggcgcaag cggtacatca tcctccctgg      8040
     gcgacaagcg gcgtctcatg caccatctcc tccggctccg ccatctcctc ctcaggctcc      8100
     tgcaccgtct cctcctcatg ctccagcacc gtctccacct caggctcctt caccgactcc      8160
     tcctcaggct ccttcaccga ctcctcctca ggctcctaca cagactcctc cgcaagctcc      8220
     tcgtccggca ccttccaagt caagggcccc ccaagctcca ccgcctgccc ccacaagggc      8280
     aacgaagaag gcaaaagttg acgccgcaaa aaacaaggac ctggggtacg attgcacgca      8340
     agaggagctt gacgcttatg tggcatcaga agtcaggaga caattgaagc ctcgaagtcc      8400
     agaaaagaag attcctatag acccgagtgc caggaaattc ttcaggggta tgtctgcacc      8460
     tgccaaggag gccataaagc tatcggacta tgagcgaaca cttaagaaag catcttctgg      8520
     aaagtccaaa ccagtccctc agcttggaga gcaaccaaac caagagatcg agccgttagt      8580
     gaccggtgaa gattttggaa tacaagaatt tattaatgac accgggctaa ctacgggtca      8640
     attgctacga ggcgcaccaa tcgaaaaggc ggaagtgaaa tacatgtacg aactcggtaa      8700
     accgcttgtc aagcctgagc agctgtagtc cctacccaca caaatgtaca agttccatca      8760
     actatacatg gagatgagcg ccaccagtag agagatgatc ggagcgagga tcagggacac      8820
     ggacttcttg caaggagatg acattctctg gatcaatttc aagggtatct acgaactata      8880
     ccagctggac gccctcgacg tctctattat gagttgctgg attttgtaag tatcgttcag      8940
     ttagatttct tattacgttt cctttaatta attaggtcct tatatataag tagactatat      9000
     ataatatata cttcctttta tcgttgtaga atggagattc aaagggcccg acggcggggg      9060
     gtttttgata ctggattcat cgaccctcgg aaagtaaacg tcgcaatgct cgaccagtat      9120
     ccgcaagcca cagaggacaa tctcgtccat ctgctgaagg cacagcatta caagacgttc      9180
     atactattgc cgtacaacac agagttttta gtgtcttcct ataacaaatt tcattcccgt      9240
     acgaacatgc taagtgtttc atatgtaatg catcccacgc acattgcaga ttccactggg      9300
     tccttttact ctttgacctg gaggcctgca ccgtcaacgt atatgactca atggataaaa      9360
     aagagtctac gtttgacaag gttttcgaac ttatagatag gtactgtcat aagttcctat      9420
     gttaattaag aatcttgtta taattaattg ctactacgaa tcatagcttt aaactccatg      9480
     tagggcttgg tatcggttcc gtcatttggt ccgcgacaaa tggagagaaa gacttaggca      9540
     gaagttcaat tttcctgtga gtacacatgc tctacattta tattcaatct ccaattcaaa      9600
     tacatacaag tgtatattaa ttagatctct catcgtttgt catttattta tagtg           9655
//
ID   RETRO1_LTR  repbase; DNA   ; ORY   ; 1079 BP.
XX
AC   AP002816;
XX
DT   06-NOV-2002 (Rel. 7.1, Created)
DT   06-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   Oryza sativa retrotransposon RETRO1_LTR, long terminal repeat.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   Long terminal repeat; RETRO1_LTR; retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1079
RA   Sasaki T., Matsumoto T., Yamamoto K.;
RT   "Direct submission.";
RL   Direct Submission to Genbank (26-JUL-2000).
XX
DR   Genbank; AP002816; Positions   16304   17383.
XX
SQ   Sequence 1079 BP; 215 A; 324 C; 292 G; 248 T; 0 other;
     tgacggagct cgtggctcct caccgggaga ccgcgcaggc ccccctttgc cggttcggcc        60
     gggggcttag ggtgagatct caagctctct ctgtatgtgg aaagattact cgccggcaag       120
     acacacgaga cacggcgatg tatacaggtt cgggccgccg cgaagcgtaa taccctactc       180
     ctgtgttttt gtggatttgt gtatgaatga gctacaaagt gtccgcccac ttctcccccg       240
     ctctaggctc taaatctggc cagaatcaac cccccccttc tctatgggca aggtcctcct       300
     tttatacttc aaggggatac cacatgcacc cttccctttc caaactggac tgttcttctt       360
     ttttttcttt aatcggcgga gattggtatg gttgtcgtcc aaatgacact tcgatgggac       420
     agctcacacc tacctccacc cccggcggag acgggcgcaa cgtgagatcg tggctgcccg       480
     ttgctgatgc gaccagtgtc agaccggtca ttcgtgtcca ccacgcgtca gtttaacaac       540
     gtgcatgttt gcccttcttc gtgtaacacc ttgcctgtaa tggttaggat gaagcctggt       600
     ataaatctac cagggctaac gtgccatctc taagagataa cacgctagct ccggcttgag       660
     acgagttgcc ttgaggcttt cgtcttgacg ggatggggcg aggcgtgcgt cagaccgcca       720
     gtcgccacct aacccttgat ctgaccggtc tgtgactggt cacagaccgg ataaaagagc       780
     gtgctgtacc gcgttgcacg cagcgtgaca cgcttgacca gactgcaata aatgctgtta       840
     ggtgagcaca gctgtgctca cttatcccat atacgtggcg cagacttctt taaggggtcg       900
     gggtgcctcg gccctcgggg ccggggcaaa cgcaacccga cccccccctc gggggaaatc       960
     aggaggaggg cggacacctc accctcgggc ccgacgtccc cgaaggtgcc aggccacgtg      1020
     ggcgattgcg tctgcctcaa gcctctggtc atgatactcc cggtcccata tcaccgaca       1079
//
ID   SZ-22_LTR   repbase; DNA   ; ORY   ; 768 BP.
XX
AC   .
XX
DT   16-AUG-2004 (Rel. 9.07, Created)
DT   26-AUG-2005 (Rel. 9.07, Last updated, Version 2)
XX
DE   Rice gypsy-type retrotransposon SZ-22.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; RIRE4; SZ-22; SZ-22_LTR.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-768
RA   Jiang N., Wessler R.S.;
RT   "SZ-22: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 79-79 (2002).
XX
RN   [2]
RP   1-768
RA   Jurka J.;
RT   "SZ-22: Minor update (separation of LTR from the internal section
RT   and cross-referencing to RCB11).";
RL   Direct Submission to Repbase Update (26-AUG-2005).
XX
CC   [1] (Consensus)
XX
CC   SZ-22 is a gypsy-type retrotransposon. It has 759bp LTRs.
CC   Similar to RIRE4. Fragments  of this sequence were previously
CC   described as "RCE direct repeats" in centromere repetitive
CC   sequence RCB11 (ref. 2). Therefore, RCB1 was removed from Repbase
CC   Update as complex repeat.
XX
SQ   Sequence 768 BP; 184 A; 199 C; 171 G; 214 T; 0 other;
     tgatgtgacc atggctacta tagatacaac cgtcgttcac atcaagatca agccgtccaa        60
     gttctgcaat ccagttcggc tacctgctac agtgtggact tcaaacggcc gccaaatatg       120
     catgcaagct ccattttgga tccatgatta cttgatggaa agctctcaga gtcatctttc       180
     caatgatcta gcttcatcgc caaattccaa cccagtcggc caaaatcaca aaaaaaaggt       240
     gttgcgtcac ctataatggg cctatgggcc tgtaacttct ctgggacccc ggcccaagtg       300
     gggcccatgt ggggtgcgcc ccaaccaggt ggagcacgac cctagggtcc ccttaggtcg       360
     tcctcccacc tccttaaata gttaggtacc cctttagagt ttcttgggtt ttgatagatt       420
     aaagtttagc cagtgctact tgcttgcagc gcacgtgtcg gctagatcgt ccgtctgctt       480
     gctcttcgga accccaactt atcttgtgta ttcattccta tttgctattc agattgcttt       540
     tatcttgttc ttgcttgttt cttcgatttg cttgcaggaa taaggttgat ctgcaccggc       600
     aagatcaaca acccacggag aggtgtattg atcgctaagg cgcaacagaa cgtcttgtac       660
     ggttgtagtc ggatcgttaa cgtttctccc aaatcatagt tatcacaact caccgaaaga       720
     tcgggccaac aacagccttg agtgtcgaga ggaactcagg gttcatca                    768
//
ID   SZ-22       repbase; DNA   ; ORY   ; 4404 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice gypsy-type retrotransposon SZ-22.
XX
KW   LTR retrotransposon; GYPSY superfamily; RIRE4; SZ-22.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4404
RA   Jiang N., Wessler R.S.;
RT   "SZ-22: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 79-79 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-22 is a gypsy-type retrotransposon. It has 759bp LTRs.
CC   Similar to RIRE4.
XX
SQ   Sequence 4404 BP; 1374 A; 951 C; 880 G; 1199 T; 0 other;
     tgatgaaccc tgagttcctc tcaacactca aggctgttgt tggcccgatc tttcggtgag        60
     ttgtgataac tacgatttgg gagaaatgtt gacgatccga ctacaaccgt acaagacgtt       120
     ctgttgcgcc ttagcgatcg atacgcctct ccgtgggttg ttgatcttgc cagtgcagat       180
     caatcttatt cctgcaagca aatcgaagaa acaagcaaga acaagataaa agcaatctga       240
     attacaaata ggaatgaata cacaagataa gttggggttc cgaagaacaa gcagacggac       300
     ggtctagccg acacgcgtgc tgcaagcaag tagcaatggc taaactttaa tctatcaaaa       360
     cccaagaaac tctaaagggg tacctaacta tttaaggagg tgggaggacg acctaagggg       420
     accctagggt cgtgctccac ctggttgggg cgcaccccac atgggcccca cttgggccgg       480
     ggttccagac gaagttataa gcccataggc cattataggt gacgcaacac cttctttttg       540
     tgatttcggc cgactaggat ggaatttggc gatgaagctg gatccattgg aaagatgact       600
     ccgagagctt tccatcaagt actcatggac ccaaaatgga gctcgcatgc atatttggcg       660
     gccgtttgaa gtccatactg tagcaggtgg ccgaactgga ttgcagaact tggacggctt       720
     gatcttgatg tgaacgacgg ttgtatctat agtagctatg gtcacatcat cctccccttc       780
     ttcacggaaa accgtcctcg gtttttccat atggtgctct tcgtgtagtc tatttaaaac       840
     aacctgtttc ttccaatcac aacaagacaa actcgagata attttgttag caataacatt       900
     tctctctagc ttgcatgttt tatccacaag tacaggaggt tctaaatctg aacagatgta       960
     aactctatgc accaaatata ttcctctatc attatattca ccaaagagat gaaaaatagt      1020
     gttacttgga catggcaaat cagacttagc aaataatttc tccttcaaat tatcgagctc      1080
     atgaaaatca gcaaactgaa catagcccaa agtatttaaa gaatatgtca attcacgttc      1140
     ctctactcta ttagcaatgt gaacaacatg cttaaaatca gcgcagttag tattaacaac      1200
     aggaatagca tgttcattca ctagttgtgg catggatata agtgaagcat tatcgcacaa      1260
     ctcttcttta tcacaaggaa cagcaagtaa atcaatttgt gacaaaggca actcagcaat      1320
     tgattccact aatggttgct ctactatagc atgaaaagtg gacaagtata gctcaccttg      1380
     agaatactca ccttcatttc tctcagcacc atttaattta ccttgcgaac tttcttcaga      1440
     catcgtaggt gcttcatcct ctttcttctc aagtatacca ttctcctttt cttggatgtg      1500
     ctgatcttcc tgcaaaacgt tagtaacagg ggagacaaaa gattgctcct ccaatgtttg      1560
     cacatcatca ttacataagt atattgggga ttcagaaata ggagataaat cacattggtc      1620
     atgcatcctc gcctttgata tgatctaact ctcaatgcta cgagcaagca tgaataggtg      1680
     cccaatataa ttatatgtca cattatcaag caaaacctga atttcagaat taagcccatt      1740
     gaaaaatcta cgcattgtat tttcattgca ctctttgaga ccactgtaga tgatacagac      1800
     cttaaattca tgaatgtact ccctaacagt tctatcacct tgtttcagat gttctaattt      1860
     ctcccaaaga gtacatttgt aataagaagt cacaaagcgt tttctcatca tggttttcaa      1920
     ttcatcctaa gtttcaggtt tattactaac ataagtccac caaaataatg cagaagaggt      1980
     aaacttatta ctagcagcct taatcatttg agcatcagaa aaatcatata tatcaaattc      2040
     attgtctact gctagctccc aatcaatgta tgcaacagaa tcaatacttt ccatcataga      2100
     atggtaactt agatgcaact tgttcaaaat tatagtcatg tacctcatat gcatcacgtg      2160
     gagaagtcgt catatctcgt cgaaggtgta gaagtcgatg ttctcgtatt cccttacgca      2220
     atcctgccat ggttagaagc aaacaagaaa cacacaaaaa tatgcacgct cctatcaact      2280
     actaggtagt ggcagctcaa atatcacaca cactcaagct tttaacgaag ctcttacaag      2340
     ttcttaccaa agcaagcgga atggtgatgt acaccgactt aaccaagcac cccaatggag      2400
     attggatgta tcgatgcctt gggaaacact tgctgtacgg ctgcaatcat atctgtggag      2460
     ctctgggtag gcttaaatat gtagcaaagg gatagcaaat gctcaaatca gagaatgtaa      2520
     agttgaataa tggttcaaag tcaagtaccg tgctggtcct aggctagaac gtactagaga      2580
     ccgagcctag acacaaacga taccacaaga tagcactagg aacaactcat gcacaactct      2640
     gatatatgaa gttcagctca aacataacag tattttctct tttctttctt tcttctttct      2700
     tcttttcttt tttttctttc ctttcctttt ctgttttttt tggtgcagtt tttttttctt      2760
     ttattttttt atgcaccttt ctgccttttt ttctcacttt tttcttgatt ttttttaaca      2820
     aaaactgact caaggacctt aatgtaaggt tacaaggact caaacgtaaa tataaaattt      2880
     acagggactc aaatgtaaaa gtctaaaccc aaaattcaaa ttatacaaaa atggaatgct      2940
     gaatttatgc cggttccgtt tttccaaaca gatctcaaaa ccgataccaa acaaaaattc      3000
     accaaggtgt ttgacacaac ttggaaccgt gaaagggagg gagggagtcg gactcggcca      3060
     aagggacgag tgggagtcgg ccaggaggtg gagtggatgg tagccgataa ttaggatttg      3120
     gtgtatggga taaaaatgaa actgattttt aaccaatcca atctactata tctttccaaa      3180
     acaaacttga ctacttccaa aatcagattg gtaattcact ttcctcctct cgtgcacgac      3240
     acaggcacgg ccaaaacaga agcacggcaa tcagcaaacc caagatgcaa ctcaacaact      3300
     ccaaatccaa ccgatagaaa cttttgaaaa ctacaaaaat agaatcgtgg cagcaagccg      3360
     attccgtttt cgtaggtccc gacgataaca gagacacaga ggcgacgacg actctggtat      3420
     aaaacatgac cagaactcga aactctaaac gaactagacg ctaagaccag caacacgacg      3480
     agacgatgca acacaaaatt caacaaagca aaaactgaaa aaaacaatgc aatggcacaa      3540
     tatggctagg taaatgatac ggattttttt tgtatggcta ttttctggtt ataggaagat      3600
     aaaaactcac cgagtaatga aagctctgat accacctgat gaaccctgag ttcctctcga      3660
     cactcaaggc tgttgttggc ccgatctttc ggtgagttgt gataactatg atttgggaga      3720
     aacgttaacg atccgactac aaccgtacaa gacgttctgt tgcgccttag cgatcaatac      3780
     acctctccgt gggttgttga tcttgccggt gcagatcaac cttattcctg caagcaaatc      3840
     gaagaaacaa gcaagaacaa gataaaagca atctgaatag caaataggaa tgaatacaca      3900
     agataagttg gggttccgaa gagcaagcag acggacgatc tagccgacac gtgcgctgca      3960
     agcaagtagc actggctaaa ctttaatcta tcaaaaccca agaaactcta aaggggtacc      4020
     taactattta aggaggtggg aggacgacct aaggggaccc tagggtcgtg ctccacctgg      4080
     ttggggcgca ccccacatgg gccccacttg ggccggggtc ccagagaagt tacaggccca      4140
     taggcccatt ataggtgacg caacaccttt tttttgtgat tttggccgac tgggttggaa      4200
     tttggcgatg aagctagatc attggaaaga tgactctgag agctttccat caagtaatca      4260
     tggatccaaa atggagcttg catgcatatt tggcggccgt ttgaagtcca cactgtagca      4320
     ggtagccgaa ctggattgca gaacttggac ggcttgatct tgatgtgaac gacggttgta      4380
     tctatagtag ccatggtcac atca                                             4404
//
ID   SZ-42LTR    repbase; DNA   ; ORY   ; 958 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice long terminal repeat SZ-42LTR.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Long terminal repeat;
KW   SZ-42LTR; retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-958
RA   Jiang N., Wessler R.S.;
RT   "SZ-42LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2(7), 99-99 (2002).
XX
CC   [1] (Consensus)
XX
CC   Insertion in DASHENG.
XX
SQ   Sequence 958 BP; 297 A; 215 C; 196 G; 250 T; 0 other;
     tgatgagggg tgttagatcc cgatcttccg aaaggtattg ataaatagtc gatttgggcg        60
     gagtcgcgac acaactcgat ccggcttcta aacgaacacg ctactgagcc ccgcaatcgc       120
     agcaccacgt ctcctctgct tatcaaccgt gccgaaaccc ggttgacctc accgagaagg       180
     ctaatccctg catgcgaatc gaagaacaca agcaagaaca acatagattg caaccaaatt       240
     gcatataaat gattaagtac acaaatttgg ggttccacaa accgatctag cggcgaaatt       300
     attcttaaca aaataatcta agcaaaaacc tagctctaaa cgatgacggc tactaaataa       360
     atgtgattag gaacgtcctg gggttgccct agggcataca ctcctttggg ctaagcccac       420
     gacacaatta caaggcccaa aactcaaaat cagattcgga ctggatgagg tgcgtggctt       480
     gttttgcaga ttcccggcaa ctcggtagga gttttgatgt gggaccaaaa ctatctgaaa       540
     agtagacttc ataagctttc caaaagtact aatgggcccc gaaattcctt ctagatcagc       600
     agctaggtcc gtttgaagtt gatgctgtca ggaggcccga atccgaatcc aaaacgtgta       660
     gaactttatc tcttgtcttc tatggaccaa aagtgatgtg gtgagatgaa ggaagacatg       720
     gaaaaggtct tggtttggtc cccaatcaac ttcttcaatc atccatgcat tccttacgct       780
     tggtctcttt tctttcgccc aagcaagtaa ctttgcaaac aaaaatacac gaaactcatt       840
     atgtagcaac atttgttcaa atatataaca agtaaatcta atgtagaaca tatacacctt       900
     tagttgatta atacataagt tagtcatggt tatatccgtg ttagttgtgt cctcatca         958
//
ID   HELITRON1_OS repbase; DNA   ; ORY   ; 10182 BP.
XX
AC   AP002484;
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   29-JUL-2005 (Rel. 7.06, Last updated, Version 2)
XX
DE   HELITRON1_OS is a rolling-circle DNA transposon.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; HELITRON class;
KW   HELITRON1_OS; helicase; replication protein A.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10182
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON1_OS.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
DR   GenBank; AP002484; Positions  128092  138273.
XX
CC   HELITRON1_OS encodes the 1635-aa OSHEL1p and 280-aa OSRPA1Hp
CC   proteins.
CC   OSHEL1p is composed of the rolling-circle initiator and DNA
CC   helicase domains.
CC   OSRPA1Hp is similar to the RPA70 subunit of the replication
CC   protein A.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(44..202,237..410,855..971,1187..1291,
FT                 1711..1971,2062..2127,2211..2351,2500..3381,
FT                 3536..6529)
FT                 /product="OSHEL1p"
FT                 /note="composed of the rolling-circle initiator and
FT                 DNA helicase domains"
FT                 /translation="MVLVHGLSATAMWAIHFFFVRTNHRTCLCERLVLCVS
FT                 ALILFTCTVGTDLRSSLFYAVHCVHGVCDLIATCSSTNWKHPYTIGSFLSR
FT                 PHHNSLHMVYAPWVSALWGTSFCIQIVSFLGVPDLCLFIIDRLILVFHRGE
FT                 DLHGLDRSFKGDFGFQLVFLVVASVISLIADRLSFQSPSFFRRRLEDMSDQ
FT                 GLNRVRRVRASRERRAANILSRQLPMHIEHTIVEPVQSTCGNERKRARSIM
FT                 NFTPELSKLNRQRRSLLSSKMPPLALTCTNNVLNAHNSGSSSRTDKEYVQS
FT                 LKACYPGRSYYGPPTYECPYCGAMFWYQERVKSTSAISKRKIIYNLLQRID
FT                 KSINTGNAPYVFKINGVVHHWIGCLLPSHGSPPKFAQLYIYYPENETQNRL
FT                 NIFENDGDNADRADPEIIAALSLMLDSENSLVQNFRYARERLSEHGNQQLT
FT                 LRLLGCNAKDDVQYNLPTSGEISGIIVGDFLAKEYKFDVLVYDKDHGLHQV
FT                 SPLHPSYMALQYPLLFPYGERGFHLGIKYNNYDGIGRKYVTMQEFFRYRMH
FT                 YRLNEPNPFTCYGRLSDQIDVDVFSTIEANRLQFFIDHQPELRAESVDGIV
FT                 DAIDGIVDAIDRGVTDGDSVGKRMILPASFIGGRRYMYSLNIQVCDYLLFK
FT                 IIPVLYTVEFQKRGLPHIHCLVWLAAPTAEISASVIDGFICAEIPDYDTDR
FT                 LGYELVSEFMMHGPCGDANKSCACMKNNKCSKNYPKDFQDETIIDEAGFTI
FT                 YRRRNDGRHIIKNGIPLDNRSVVPYNMKLLKTYQAHINVEWCNKSNLIKYL
FT                 FKYITKGQDRARIYFETTGKTTNASPNHDLAPQDEILEYMDGRFLSTCESL
FT                 HRLFEFDIHYRMPSVERLVVHLPGKNYVRYEKGSNLRAVLKSPAAKSSMLT
FT                 EWFEANKKYPKAHSLTYCEFPKEQTWEPSSRVWRPRTPAPKIGRIYYVHPT
FT                 AGELYYLRMILMIVRGAQSYADVRTYNGIVYSTYREACEAQGLLEGDNEWY
FT                 LLFDEAILTASSQQLRQLFVTILLYCSVIDVRSLFDKYWIHMTDDIHNRLK
FT                 KALDNPHCIIPQDHLLNLLLHELATVFAKSGGDIKDFNLPHPTSIAHIAGG
FT                 NRLIDEELTIDPLMLSMHADSLITQLNTEQKHIFDVISSRVAHNQPGFFFV
FT                 CGHGGTGKTFLWNAIIAKLRSQNKIVLAVASSRVASLLLPRGRTAHSRFKI
FT                 PIDIDETSICNIKRGSMLAELLIEASLIIWDEAPMTHRRCFEALDRTLRDI
FT                 LSQTCATNSIIPFGGKPVVLGGDFRQILPVVPKGSRHAIVNASITNSDLWK
FT                 HVTVLTMNINMRLLNTNLEQKQKDELHDFSKWVLAIGNGTIPMTTKEGESY
FT                 PSWIEIPHDLLIITDGDKISAIVNEVYCDFFASYMNPEYLASRAIVCPNNA
FT                 TIDEINDYVIGLVPREARIYLSCDTISKCAEQIPDFDLLYPPEFLNSINAA
FT                 NFPTHRLILKEGVVVMLLRNLNQSIGLCNGTRLLIVALGDRILQCIILIGS
FT                 NIGDTVYIPRITLSTTKMKWPFTLQRRQFPIRVCYAMTINKSQGQTLQRVG
FT                 VYLRKPIFTHGQLYVTISRATSRSGLKILIENDDGSCGNHTRNIVYSEILT
FT                 ATFPAVLFLTLPYTL"
FT   CDS           join(6812..6955,7048..7449,7696..7800,7886..7960,
FT                 8092..8187)
FT                 /product="OSRPA1Hp"
FT                 /note="similar to the RPA70 subunit of the
FT                 replication protein A"
FT                 /translation="MAHILISQLSCGDSNIRIKARVSRLWDFHDLNDDRKI
FT                 VHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVYYIDSFTVRYANRTY
FT                 RPVAHSLMILFTKWTTLEECVDVPADFPAITFSLTPFGDVPSLVDKNIFYV
FT                 GNNLSIPSYYIYTSFASLQHLLNLYHIQTDIMGVIAEIGTTSTRATAFDAE
FT                 NIYNAGQRQPQVVVFVGTLVKNYKGLGLTLTGSSPCKWYINFEIPEVVELK
FT                 ERWNDAPPAGFNQSNPQEKTLKDILDLNPHKHK"
XX
SQ   Sequence 10182 BP; 3051 A; 2026 C; 1826 G; 3279 T; 0 other;
     atgcgagtgg ttgcttcctg tgtttcatcg atgaccttgg tgcatggtct tggtgcatgg        60
     tcttagtgcc actgctatgt gggccattca ctttttcttt gttagaacca accatagaac       120
     ttgtttatgc gagaggcttg tcctttgtgt cagcgctctt atactgttta catgcaccgt       180
     tggaactgat ctacggtctt ctatgtatgt tttgtggccc ctgttttgct tttagtctct       240
     tctatgccgt gcattgtgtt cacggtgtat gcgatctgat cgctacctgc agctccacta       300
     actggaagca tccttacact attggttcgt ttttgtctag gccacatcac aatagcttgc       360
     acatggtcta tgcaccttgg gtctctgcat tgtggggtac cagtttttgt gtgtgctggt       420
     tggaccacca gcatttgtcc atgtcttaat ccattgtact caatcatata ctgttgcatt       480
     tcacttagtt gagtgatagt tctactagag gcaaaacaat tgtttcactg ctactgggac       540
     cgcctgtcat ggtgttgaca gttgtctatt tgttattggt gggtaccttt ctttcacggt       600
     ggatatgaga ttgcttttat tttttaagct aaaatagcat attggtttca tccttatatg       660
     tatcgcctcc aatattgctt gcttccttcc tcttgcttct cgccttatct cactgcattc       720
     agttgtgtgt tgttcaccga tttcacacca ctgatcgacc tattatcatt gtgctaaatc       780
     atccattact aatggcaggg taataattgg atttaaatgg atttcttctt ttttatatgt       840
     gtggattcaa ttagattcag attgtctcct ttttgggtgt gcctgatctg tgcctcttca       900
     ttattgatcg tttaatacta gtttttcaca ggggagaaga tttgcatggg ttagatcgca       960
     gtttcaaagg ttcttgattg tttttcgtaa taagtgcaag agctgctgat gtgatttggc      1020
     aggtattctt ttttttctct tttcttctcg acattttgtg acataaatcg tattcttttg      1080
     gctgcattcg gctcaagatt attctgtact aatctttttg cgtttgtcat gcagctctga      1140
     tcggttctgt gggtagttgt tcgttgttat tattgctgct ttaggagatt tcggatttca      1200
     gttagtgttc ttggtggtag ccagtgtgat ctctcttatt gctgatcgtc tgtcgttcca      1260
     gtccccgtcg ttctttcgtc gaagactcga aggtaattta ttacttcata ctgtttattt      1320
     ttgcgtggtt tttacaagca aattacctat cagttttgtg atgtatgctg catctctgta      1380
     tgcatggatt ggtttctccg tatcaacatt ctttttgtca ttgtggagtg ttcttttgtt      1440
     ccttgtgtaa aaattactag ctttgtttga atcattgctt tgtgtgttgt ggttgtacga      1500
     gagagaacgt acatgcactg ttataacggt tgagtgtata ctttctacta gctgttacat      1560
     agatggtcat gcatatgttt cttttttttt tatgtctcat ctctcttttt agctatggtc      1620
     atctttcctc cccttaccta ttttttcctt tctccatata tgacttccta gctcctcttt      1680
     cctttacatt ctcatgttat gctgtttgta gacatgtcag atcagggttt aaatagagtg      1740
     cgcagagttc gtgctagccg ggaaaggcga gctgcaaata ttctatctcg acagcttccc      1800
     atgcacatag aacataccat agtagaacca gttcagtcta catgtggaaa tgagcggaaa      1860
     agagcacgtt cgattatgaa tttcacacct gagttatcta agttaaatag acaacgacgt      1920
     tctttgctaa gctcaaagat gcctcctctt gctcttacgt gcactaacaa tggtatgtag      1980
     gttatttttc atgatatatt cataatatat caaatcacat ataggtttgt aaaaatattc      2040
     ttggaatatt tgtttgctgc agttctcaat gcacacaata gtggtagctc atcacggaca      2100
     gataaggagt acgtgcagtc actaaagggt ctgcacccct actacacata caatagtctt      2160
     ttttttattt ccaaacataa attcttactt tgttcactgc gtatattaca gcgtgttacc      2220
     cgggcagatc atactacggt cctccaacat atgagtgccc atattgtggt gccatgtttt      2280
     ggtatcagga aagagtgaaa agcacttcag ctatttccaa gcgaaaaata atctataact      2340
     tgttgcaaag gtggtaaaat acaattgccc aaattgcgcc ctccccctga accacttgcg      2400
     acattaataa attttaatgg cgatgcacga tcaaagagat ttttgaggca gatacgatca      2460
     tataactcga tgtttgcttt cacttcaatg ggtgcaagta tcgacaaatc aattaatact      2520
     ggaaatgcgc cttatgtttt caagattaat ggtgttgtcc atcattggat tggttgtctt      2580
     ttgccatctc atggttcacc tccaaaattt gcacagttat atatttatta tcctgaaaat      2640
     gaaacacaaa acagactaaa tatttttgaa aatgatggag ataatgcaga tagagctgat      2700
     cctgaaataa ttgctgccct ttcattgatg cttgatagtg aaaatagcct tgtgcagaac      2760
     tttaggtatg ctagagaacg actttctgaa catggcaacc aacagctaac tcttcgtctc      2820
     ttaggctgca atgcgaaaga tgatgtgcaa tacaatttac caacaagtgg tgaaatatct      2880
     ggcataatag ttggtgattt cttagcaaaa gagtacaaat ttgatgtgct tgtctatgat      2940
     aaagaccatg gattacacca ggtttcgcca ctgcatccat catatatggc cctgcaatat      3000
     cctttattat ttccatacgg tgaacgagga ttccatttag gcattaagta caataattat      3060
     gatggaattg gaagaaaata tgtgacaatg caggaatttt ttagatacag aatgcactat      3120
     agactaaatg aaccaaatcc tttcacatgc tatggacgac taagcgatca aatcgatgtt      3180
     gatgtgtttt ctactattga ggctaatagg ttacaatttt tcattgacca ccaacctgag      3240
     ttacgagctg agtctgtaga tggaattgta gatgcaatcg atggaattgt agatgcaatc      3300
     gatagaggtg tcaccgatgg agattcagtt ggcaagcgca tgatacttcc tgccagcttc      3360
     attggaggaa ggagatatat ggtaatgaat tatcaagatg caaccatctg atagagctga      3420
     tatcattgtg cgtgtattta atatgaaagt taatgaattc ataactgaca ttagagaagg      3480
     cagaactttt ggtaaagttc ttgtaggtat ttttgctcct tcctatttca tatagtattc      3540
     cttaaacata caagtatgtg attacttatt atttaaaatt attccagtac tctacaccgt      3600
     tgagttccaa aagcgtggac tcccacacat acattgcttg gtatggcttg cagcacccac      3660
     cgctgagata tcagcatcgg taatagatgg ttttatttgt gctgaaatac cagactatga      3720
     cactgatcga ctaggatatg aattggttag tgaattcatg atgcatggtc cgtgtggaga      3780
     tgcgaacaaa agttgtgctt gcatgaaaaa taataaatgc tcaaaaaatt atccaaaaga      3840
     ttttcaggat gaaaccatta ttgatgaggc tggctttaca atttatagac gacgaaatga      3900
     tggacgacat attataaaaa atggaattcc attggacaac agatcggttg ttccttacaa      3960
     catgaagctg cttaaaacat atcaagcaca cataaatgtt gagtggtgta ataaatcaaa      4020
     tttgataaaa tatttattta aatatatcac aaagggtcaa gatcgtgcta gaatctattt      4080
     tgagacaacc ggtaaaacaa caaatgcatc accaaatcat gaccttgcac cacaagatga      4140
     gatattagaa tatatggatg gtaggttcct ttctacatgt gagtctcttc atcgactatt      4200
     tgagtttgat atacattata gaatgccatc tgttgagcga ttagttgtac atttgcctgg      4260
     caaaaattat gttagatatg agaaagggtc taatttacga gcagtcctaa agagccctgc      4320
     tgcaaaaagt tcgatgctaa ctgaatggtt tgaagcgaat aaaaaatatc ctaaggctca      4380
     ttcattgaca tactgcgaat ttccaaaaga acagacatgg gagccatcat ctagagtgtg      4440
     gcgcccacga actcctgctc caaaaattgg tagaatttac tatgtgcatc caactgctgg      4500
     tgagctttac tacttgcgaa tgatactgat gattgttaga ggtgcccaaa gttatgctga      4560
     tgtgcgaaca tacaatggca ttgtttattc cacatataga gaggcctgtg aggcacaagg      4620
     gctcctcgaa ggagacaatg aatggtacct gctttttgat gaggcaatac taactgcatc      4680
     atcgcaacag cttagacaac tttttgtaac catccttctt tattgctcag ttatagatgt      4740
     gcgctcatta tttgacaagt actggataca catgacagat gatattcata atagactaaa      4800
     aaaagcgcta gataatcctc actgcataat tccacaggat cacttgctta accttctatt      4860
     acatgagctt gctactgtat ttgcaaaaag tggtggtgac ataaaggatt ttaacttgcc      4920
     acacccaacc tccattgcac atatcgctgg tggtaacaga ttgattgatg aggaacttac      4980
     aattgatcca cttatgctaa gcatgcatgc agattctttg ataacacaat tgaatactga      5040
     gcaaaaacat atttttgatg ttatatcttc tcgtgttgct cataatcagc ctggtttctt      5100
     ctttgtgtgt ggccatgggg gaaccggcaa aacatttcta tggaatgcta tcattgcaaa      5160
     acttagatca caaaataaaa ttgtgcttgc tgtagcgtca tcaagggtgg catctttact      5220
     gctacctaga ggtaggacag ctcactcacg atttaaaata cccattgata ttgatgagac      5280
     aagcatttgt aacattaaac gaggaagcat gcttgctgaa cttttaattg aagcttcgct      5340
     tattatatgg gatgaggctc cgatgacaca taggcgatgt tttgaagcgt tggatcggac      5400
     tttacgtgat atcctttctc aaacgtgtgc tacaaattct attatacctt ttggaggaaa      5460
     acccgtcgtt ctaggtggtg atttcagaca gatattgcca gttgttccta aaggttcccg      5520
     ccatgctata gtcaatgcat caatcacaaa ttcagatcta tggaaacatg taacagtctt      5580
     aacgatgaat ataaatatga gactacttaa cacaaaccta gagcaaaagc aaaaagatga      5640
     gctgcatgat tttagtaagt gggttttagc tattggtaat ggcacaatac ctatgaccac      5700
     gaaggaaggt gaaagctatc catcatggat cgaaattcct catgacttac ttattataac      5760
     tgatggtgat aaaatatctg ctattgtgaa tgaagtgtat tgtgattttt ttgcatcata      5820
     catgaatcct gaatacttag cttctcgtgc aattgtttgt cctaacaatg ctacaataga      5880
     tgaaataaat gactatgtta ttggtttagt accaagagaa gcaaggatat acctaagctg      5940
     cgatacaata tcaaagtgcg ctgaacaaat tccagatttt gacttgctat atccacctga      6000
     gtttcttaat tcaataaatg ctgcaaactt ccctacacat agacttatcc tcaaagaagg      6060
     tgttgttgtc atgttgctca gaaatctaaa ccaatcaatt ggtctctgca atggaacaag      6120
     actattaatt gttgctttag gtgatagaat tcttcaatgc attatactca ttggctcaaa      6180
     cattggtgat actgtttaca tacctcgaat aacactgagt actactaaaa tgaaatggcc      6240
     ttttacattg caaaggagac aattccctat tcgagtttgc tatgcaatga ccatcaataa      6300
     aagtcaagga caaacactac aacgagttgg tgtgtacctt agaaaaccta tttttacaca      6360
     tggccagttg tatgttacaa tttcaagagc tacaagtcga tcaggtctaa aaatattaat      6420
     tgagaacgac gatggttcat gcggaaacca tacaaggaat attgtttaca gtgaaatact      6480
     cactgctaca tttccagcgg tgcttttctt aacactgccc tatacattgt attcatcttt      6540
     ttcttagcat catttagtaa tgcaaatcca ttccaattgc aggctccgcc gttgcatact      6600
     tagctatttt ggcctaaaca gggacaaatt ttgtacaaac attttggaat aaatatatgt      6660
     cttcagcagc tatcatgtgc tatatacccg ctgcaatatt cccctcttaa tattatatgt      6720
     actgtctttg tcatcactgt tttctttcat tagcagtaac tatatagatt aatatgtatt      6780
     aaaattgttt actacctatt gcagattcca aatggcgcac atactcatct cacagctgtc      6840
     atgtggtgat tcaaacatac gaattaaggc aagagtttct aggctatggg actttcatga      6900
     tctcaatgat gatagaaaaa ttgtgcacac tgatcttgtc ttactggatg aaacggtaac      6960
     aatttaccta ctgcaatttt acactagaat tttctttatt gtattaatca ttctattgac      7020
     aatattctct atatttaaaa aatatagggg aacagcatac atgctcaaat gtatcagcat      7080
     gtaatagtga acttgaaacc tcttcttcaa gaaggaaaag tttactacat tgattcattc      7140
     actgtcagat atgcaaatag gacatatagg ccagttgcac atagcctaat gatcctattc      7200
     actaaatgga caactttaga agaatgtgtc gatgtgcctg ctgatttccc tgctataaca      7260
     ttttcattga caccttttgg agatgttccc tctcttgtgg acaaaaacat cttttatgtt      7320
     ggtaataacc tatccatacc atcttactac atatacacat cttttgcttc tttacaacat      7380
     ttattaaatt tataccacat acaaacagat attatgggtg ttatcgctga aattggcaca      7440
     acgtctactg tacgtcctca gtcaaggaac actgacagtt taaaaagaac actataaata      7500
     tgtgatgcaa ggttagttcc atgaaactca gtccttacca ttctactttc caaatatttg      7560
     ttttaacgaa cattcatact cacttttaca catgctttga atatctaata atttgttcca      7620
     attataatta caccaatttt tctattaatc cacaacacta gcaattccac actacctctc      7680
     acactttgtg gagagcgagc aactgctttc gatgctgaga atatctacaa tgctggccaa      7740
     agacaacctc aggtggttgt gtttgttggc acgcttgtca agaactacaa aggcttaggt      7800
     acatttgtac ctacaatttc gcttactatg ttgtgtataa tacaaaatta acaatatttc      7860
     aaaattcctc tattcttcta cagggcttac actgactgga agctccccat gcaaatggta      7920
     cattaacttt gaaatacctg aagtagtgga actgaaagaa aggtgatctt gttatcttcc      7980
     aagtattcct gcaatctatt tacattgcac aatttgcaac tattaggatg acatccatta      8040
     attctagaca caatatgttt gcatagcttt agcaccaact ttcagccaat caggtggaac      8100
     gacgctcctc ctgcaggatt caaccaaagc aacccacaag aaaagacact taaagacatt      8160
     cttgacctta atcctcataa acataaggtt tgtcttacct cttaattaac tatcaacaac      8220
     attttcctgg attttacagt cgtattatca acagaatttt ttcactctta tcctttgcag      8280
     gaagcacgct tcatagtaaa tgtggttgtt aaaagaatat gcaacgaaaa ctcctagtgg      8340
     tacaattcat gtcacctatg ctacaaaacc tcaaaaccat atggctcagc ctacaagtgc      8400
     accagttgtt cctatatagg aataccagat caaaggtcaa tagcgcagtt taattaattc      8460
     tacatgtcta actatttatc actcacaaat ttctatattc atttaaattt acatgcaagt      8520
     acaaattagt gctaattgct ggagatacta ctgcagatgc aacatttatt ctttttggaa      8580
     aaactgcgca acgcatcata cgaaggccag tggaatctct gatcgaagaa aatccaccgg      8640
     acagtgaatt cattccaagg gaaatcttag cacttgttga caatggtttt ctatggaatg      8700
     tcagcttcac aaaggatatt aacagaagcg aagaaactct ccaggttaat agtgttatat      8760
     cctctggtcc agcaaatcaa ccaccgctgc ttatgtcgcc aagtacttca cagccagcat      8820
     cagcaattgt atcggcaagc tcaagcagtt ctctccagac agcaccaaca ccaagtgaaa      8880
     caagcaccga atcgcaatta gccatcatac cagcacaggg cacttcaaca ccaacaaaat      8940
     acactcctgc tgctgcaaca gatgagacac caactagcaa atcaagctcc ttagtattta      9000
     ccaaaaaaag cattattgtc tcaggctact ctatgccatc tcacactgca aagacctcta      9060
     ctgatactaa ggtatccttc ttaataccta ctcttgcact tcctctgcta taaacaaatt      9120
     ttcctaaata attggagata cactctgacc tattgaccaa ctatgcaagg caaaaattgg      9180
     cactcatcat gaagagaaga tctcacaaag tgcatcttta actacaattg ttccccgtga      9240
     tacttcggat aaggtattca tgctctttct tttcataacc taatccatca atttctgaaa      9300
     aaaaagtgct tcttctacaa ggcaaaggtc accgctgaat ctccagatga gtctccacag      9360
     gcagatcctt cactggcgcc aaagagcaca cccaaaaaaa ggtctgtaaa gctttcagtt      9420
     caaagttaca gtaatagaca tttctcgcac acattgtatt tgacatgtcc ttataatgaa      9480
     cagaggtaga cctacagaaa ccaccacaat tgccaaaaaa ttgttcaagg atagtaccca      9540
     gaagaaaccc actgacaggt taattctgaa taactcagct cacctctcca cacatacgca      9600
     ttaattcttt agtaaacttc actaaatttc taaactcatc attcattcct acagtgaatg      9660
     agacggatat atgtagtcca tcagcaagtc ttttgtgtat atgtacagaa cgaaccaccc      9720
     aagctagaag tgtagaagca acaagttagc tgcaagccta gaggaggcta agaagcaagc      9780
     ccttttgttc atgaccccta ggtcatgatt atcattgtaa ataagtaatg ttatgtttac      9840
     cttccttgcc accttctgtg ctatgaaatg ttgttcgaac aactactact tatatggaac      9900
     caatatagtt atggctgcgt actacctaaa catttctcct tcatgtcaaa gacaccatta      9960
     tacgcaaacc ttttattttc tactatagct atatcgaacc atacaataca ctacatgata     10020
     aatagcacaa attattctga caagcaaact ccattgtctc aatcctacgg catggaaaga     10080
     tttttaaaat acactacact atctatattc ctatacattt aaatgatgaa aaaaacttcc     10140
     agctccacaa gagcagcgcg cgaagcgcgc tctcgcccct ag                        10182
//
ID   TNR8        repbase; DNA   ; ORY   ; 647 BP.
XX
AC   AB052632;
XX
DT   10-JUL-2002 (Rel. 1, Created)
DT   09-SEP-2002 (Rel. 1, Last updated, Version 3)
XX
DE   Oryza glaberrima DNA, transposable element Tnr8-1.
XX
KW   TNR8.
XX
OS   Oryza glaberrima
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-647
RA   Cheng C., Tsuchimoto S., Ohtsubo H., Ohtsubo E.;
RT   "Tnr8, a foldback transposable elements from rice.";
RL   Genes Genet Syst 75(6), 327-333 (2000).
XX
DR   GenBank; AB052632; Positions       1     647.
XX
CC   FEATURES Location/Qualifiers
CC   source 1..647
CC   /organism="Oryza glaberrima"
CC   /db_xref="taxon:4538"
CC   repeat_region 143..331
CC   /rpt_type=inverted
CC   /rpt_type=terminal
CC   repeat_region 143..560
CC   /rpt_family="Tnr8-1"
CC   repeat_region 372..560
CC   /rpt_type=inverted
CC   /rpt_type=terminal
CC   Identical with the sequence TNR8-1.
XX
SQ   Sequence 647 BP; 216 A; 103 C; 109 G; 219 T; 0 other;
     gagaaccaat gaaaagagtg aagtacagaa ggtaatcacg ttaagaaaaa tgatgtgaga        60
     aacgcctagg agtcttccgg ctagctccac aaggtggtgg gctagacgac ctggattcga       120
     agtttcaccc cttctaatta ttgagtaaat ttcacaaaac tacaggtatt ttgacgaaat       180
     tatcacaaaa ctacagattt aaggagttgt atcataaaac tacacattta gcaccaaatt       240
     tatcacaaaa ctgcagattt taggttaagt atcacaaaaa tacatattta atattgaact       300
     tatcacaaaa ctacaacttt tggagtttaa atccctagca ccattgttat ggtgtagcta       360
     taaacatgat taaattggtt ctaaacccgt agttttatga taatttagtt tctaaacgtg       420
     tagttttgta acacttcatc ttaaatgtgt agttttgtga caaatttggt gctaaatgtg       480
     tagttttgtg atacaactcc ttaattctgt agttttgtga tagtctagtc atagtatctg       540
     tagttttgtg aaatttactc ctaattattt gatattaggt ccttccctaa tattcgcgtc       600
     ttttttgtta agaaaaatga tgtaaccatc tataaggacc caatcca                     647
//
ID   LINE5A      repbase; DNA   ; ORY   ; 437 BP.
XX
AC   .
XX
DT   06-NOV-2002 (Rel. 1.1, Created)
DT   06-NOV-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   Rice putative long interspersed nuclear element LINE5A - a
DE   consensus.
XX
KW   LINE; long interspersed nuclear element; LINE-5; LINE5A.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-437
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences.";
RL   Plant J 25(2), 169-179 (2001).
XX
RN   [2]
RP   1-437
RA   Jurka J., Drazkiewicz A.;
RT   "LINE5A: a putative LINE element from Oryza sativa.";
RL   Direct Submission to Repbase Update (25-JUL-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 437 BP; 129 A; 129 C; 132 G; 47 T; 0 other;
     aacacaactc caaacagcgg ggaaggggca gagccacgct acactcccaa caaatcccca        60
     aaagcagcaa cgccagctaa agaccacaga tggccctccg agaggatgga ctccagaacc       120
     actgagaccg aagagagcgc agagtcgaaa accctagagt tccgttcctt ccacagctgc       180
     caagagacca ggaggaccag ggagtcgaag ccggcgcgaa gatgctcagg taagcaggcc       240
     ctagaagatg gccaccagtc ctggagccag ctgccacggg gaggagagag ggcagcccag       300
     ccaggaggcg acaacacacg gagccagacc tgccgagcga acacacagtc gaggaggatg       360
     tggttcgccg tctcaagctc ctgagcgcaa aaaggacagg ccgagtggct atcgatgcca       420
     cgcttttgga ggagatc                                                      437
//
ID   RETRO2_I    repbase; DNA   ; ORY   ; 10690 BP.
XX
AC   .
XX
DT   19-MAY-2005 (Rel. 10.05, Created)
DT   19-MAY-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Gypsy-like LTR retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; RETRO1;
KW   RETRO2_I.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10690
RA   Jurka J.;
RT   "A consensus sequence of gypsy-like LTR retrotransposon from
RT   rice.";
RL   Direct Submission to Repbase Update (19-MAY-2005).
XX
CC   [1] (Consensus)
XX
CC   This element is highly similar to RETRO1 element over the first
CC   ~6kb region. The remaining 4.5kb of the sequence has no
CC   counterpart in RETRO1. It contains extra putative proteins on the
CC   complementary strand.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(34..1710,1709..2509,2513..6238)
FT                 /product="RETRO2_I_1p"
FT                 /translation="FSELSYSFVCAKLLLFSPMAEPAKAHDLSPSVSGDDG
FT                 EPNPRRRARTPPPPPRQSPRREEALERVERSATSPSAGDGEGRRDGERRLL
FT                 VYGDGSTPQGALQAAGALLRHPPVVPDPESPAQRWLDDVANLVMTAQQRLG
FT                 AGGRSSATKASGAATTGSVSSRRRARRAAAVARHSAATPSSTPPTREDLRG
FT                 GPDARLNIERRRNGRRAAHATEGASSSRVSPRHGRGDQPSVPPVGGVGCRA
FT                 FVASLRNVRWPPRFRPTITEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMAN
FT                 FFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEEADLHA
FT                 VQRGDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGVCGTTACSKRSPPK
FT                 SPRLPRSFFSSRTEWLVRRRHGPGTPPVPVWQLRPPPGPPLRQGGVTGGGR
FT                 RGRPIPTTRVMSSPSRALRGPPERGGLRATKRKRPALPAGSAQPASGAPST
FT                 TPPSTTSRTAAQSKVWLSGRGSGRRRGGRSAVRASPRRFLPAIGEVRPSRR
FT                 PPPRTSMMAMMTPRFPGAWGHHCHRRWGACAHVSRRSLKAMKRELLAAAPT
FT                 HEATRRARWSEVALTFDQTDHPPCVARGGQIAMVVSPTVCNVKLGRVLIDG
FT                 GAALNILSPAAFDAIKAPGMVLRPSQPIIGVTPGHTWPLGHIDLPVTFGGS
FT                 ANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKMPGPGGPI
FT                 SVHGDLKVALACMEQRADHLAAASKPEGGDERLGTSAPAAPRQRIVTCDEV
FT                 PVKEVALGDGPSKTTRIGGLLDGKEDALVSFLRANADVFAWRPADMPGVPR
FT                 EVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPE
FT                 WLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLL
FT                 CFLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTT
FT                 RISLGSQLGRNVEAYVDDLVVKTRNQETLLSDLAETFESLRSARIKLNPDK
FT                 CVFGVPAGKLLGFLVSARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAA
FT                 LSRFISRLGEKALPLFKLLKRSGPFTWTEEAERALTQLKAYLSSPPVLVAP
FT                 EPNEPLLLYLAATPQVVSAALVVERDEDNPHSAHPHPVLTWPGREQGGEAP
FT                 EPNGGPRPPTTGAGPLPACQTVPGAPDPQDGPEATAGRPRLSPSDLEANPV
FT                 PIRPGREQGEEAPEPNGGLRLLTTGVGPLPACPTTPGAPDPQDGPEATVGR
FT                 PPLSTSDPEVVGTEDECAPRGRLDEERPGDAAPGEEDRPRRKVQRPVYFVS
FT                 EALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSYPLGQILHNR
FT                 EGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWTPAPEPVSIPEAS
FT                 SDPSQLPHTAHWVMQFDGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATN
FT                 NMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYV
FT                 RQVRRMERHFDGIELRHVPRRDNMMADELSRLASSRAQTPPGAFEERLAQP
FT                 SARPDPIGETDAPDRPPRPVGVQASGPEGSAPSSLRLIAWIAEIQAYLTDK
FT                 TLPEDREGSERVHRISKRYVLVEGTLYRRAANGILLKCIPREQGVELLADI
FT                 HEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQ
FT                 PAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAIDKFTKWPEAYPV
FT                 VKIDKHSALKFIKGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCF
FT                 ASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRT
FT                 TPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYL
FT                 EERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLS
FT                 PMWEGPYRVIGVPRPGSIRLATGDGTELPNPWNIEHLRRFYP"
XX
SQ   Sequence 10690 BP; 1937 A; 3499 C; 3354 G; 1900 T; 0 other;
     tctggcgcgc caggtagggg actctgcgtg tgattttctg agctctcgta ctctttcgtg        60
     tgcgccaagc ttctcctgtt cagcccaatg gccgagccag caaaggcgca cgacctctct       120
     ccgagtgtga gcggtgacga cggggagcca aacccacgcc gtcgagctcg tactccaccg       180
     ccccctccac gccaaagtcc taggcgggag gaggcgctcg agagggtcga aagatccgcg       240
     acttcgccat ccgcgggaga tggagaagga cggcgagatg gggagcgtcg cctcctcgtc       300
     tacggcgacg gcagcacgcc ccagggcgcg ctccaggctg caggcgcgct cctacgtcac       360
     ccgcccgtcg tccctgaccc ggagtctcca gcccaacgtt ggctggacga cgtggccaac       420
     ttggtcatga cggcacagca gcgcctaggt gctggtgggc ggtcctccgc caccaaggcc       480
     tctggcgctg ctaccaccgg ctccgtgtcg tcaaggcgga gggcgcggcg agcggcggct       540
     gttgctcgcc attcggccgc cactccctcg tcgactcctc cgacccggga agatctgcgt       600
     ggggggccgg atgcccgcct caacatcgag cgccggcgta atggccgacg tgctgcccac       660
     gcaacggagg gcgcttcctc gtccagagtg tcacctcgac acggacgcgg ggaccagccc       720
     tccgtgcccc cggttggtgg tgtcggctgt agagcctttg tggcgagtct tcggaatgtc       780
     cgttggcccc caaggttccg gcccaccatc accgaaaaat atgacgggag cgtcaacccc       840
     gccgagtttc tccaggtcta tacgaccggg attgaggccg ccgggggtga cgacagggtc       900
     atggcgaatt tctttcccat ggccctgaaa ggacaggcgc ggggttggct aatgaacttg       960
     ccacccgcgt cggtccactc ttgggaggat ttgtgccaac agttcaccat gaacttccaa      1020
     ggcacatatc cacgcccagg tgaagaagcg gacttgcacg cagtacagcg aggggatgat      1080
     gagtcacttc gctcgtacat tcagcggttc tgtcaagtcc gtaataccat accatgcatc      1140
     cctgcacacg cggtgatcta cgcgttcagg ggggtgtgcg gcacaaccgc atgctcgaaa      1200
     agatcgcctc caaagagccc cagactaccg cggagctttt tcagctcgcg gaccgagtgg      1260
     ctcgtaagga ggaggcatgg acctggaacc cctccggttc cggtgtggca gcttcggccg      1320
     cccccgggtc cgccgctcag acagggcggc gtgacaggag gaggaagaag aggtcggccc      1380
     attccgacga cgagggtcat gtcctcgccg tcgagggcgc tccgcgggcc acccgaaagg      1440
     ggaggcctgc gagcgacaaa aagaaagagg ccggcgctcc cagcagggag cgcccaaccg      1500
     gcaagtggtg ctccgtccac aacacctccc tccacgacct cgcggactgc cgcgcagtca      1560
     aaagtttggc tgagcggacg aggaagtggg aggaggagag gaggcaggag cgccgtgagg      1620
     gcaagtcccc ggcggttcct tccggcaatc ggcgaagtga ggccaagcag aaggcccccg      1680
     ccgaggacat cgatgatggc gatgatgacc taggtttcca ggagcctggg gccaccattg      1740
     ccaccgtcga tggggagcgt gtgctcacgt ttctcgccgg agcctcaagg ccatgaagcg      1800
     agagcttctg gccgcggccc ctactcatga ggcgacgcgc cgggcgcggt ggtcggaggt      1860
     tgccctcacc tttgaccaga ccgaccaccc accgtgcgtt gcccggggag gacagatcgc      1920
     gatggtggtt tcccccaccg tttgcaacgt gaagttgggg cgtgtcctca tagatggagg      1980
     agcagccctc aacatccttt cccccgcagc ctttgacgcc atcaaggccc cggggatggt      2040
     gctccggccg tcccagccga tcatcggtgt gacgccgggg cacacttggc cgctaggtca      2100
     tatcgacctc ccggtcacct tcggtggatc cgccaacttc cgcacggagc gggtgaactt      2160
     cgatgtggcg gacctcagtc tgccctacaa cgcggtcctg gggaggcccg cgttggtgaa      2220
     gttcatggcg gcggtccact acgcctacct ccagatgaag atgccgggcc ccggtggccc      2280
     catctctgtc catggcgacc tcaaagtcgc gcttgcttgt atggagcagc gcgcggacca      2340
     cctcgccgcc gcgtccaagc ccgagggtgg cgacgagagg cttggcacct ccgcccccgc      2400
     cgccccgagg cagcggatag tcacgtgcga cgaggtcccg gtcaaggagg ttgccctggg      2460
     cgacggcccg tccaagacca cacggatcgg tggtcttctg gacggcaaat aggaagacgc      2520
     gctcgtctcc ttcctgcggg caaacgctga cgtcttcgca tggagaccgg cggatatgcc      2580
     cggggtcccc agggaggtga ttgagcaccg tctcgccgtg cggccgggcg caaggccggt      2640
     ccggcagaaa gtgcggcggc aggccccgga acgtcaagcc ttcatccgcg aggaggtggc      2700
     gcgacttctg gaggccggat tcatccgtga ggtcatccat ccggagtggc tggcgaaccc      2760
     ggtggtcgtc cccaaggcga acggcaagct tcggatgtgc atcgactaca ccgaccttaa      2820
     caaggcatgt cctaaggacc cttaccccct gcctcgcata gatcagattg tcgactccac      2880
     cgcggggtgc gaccttttgt gttttctaga tgcatactct ggttaccatc agattcgcat      2940
     ggctagggag gatgaggaaa aaactgcgtt cattaccccc ataggaactt attgttatac      3000
     aacaatgccc ttcgggttaa agaatgcagg tcctactttt caacgtacta ctcgaatttc      3060
     tttgggtagc caattaggac gtaatgttga ggcttatgtc gatgacttgg ttgtaaagac      3120
     gcgcaaccaa gagacgttac tctcagatct agcggaaact tttgaaagtc tccgctccgc      3180
     ccgcataaaa ctgaaccccg ataagtgcgt gttcggtgtg cctgcgggca agcttctcgg      3240
     gttcttggtc tctgcccgag gcatcgaggc caaccccgag aagatacgag ctatagagcg      3300
     gatgcgcccc cccagcaagc ttagggatgt gcagtgcgtc accggttgca tggccgccct      3360
     aagtcgcttc atatcgaggc tgggagagaa ggcgctaccc ttatttaagc tcctcaaacg      3420
     ctccgggccg tttacttgga cggaggaagc tgaacgtgcc ctcactcagt tgaaggcata      3480
     tctcagctct cccccggttc tggtcgcccc ggagccaaat gagcccttgc tactctactt      3540
     agcggcgacc ccgcaagtgg ttagtgcggc gttggtcgtg gagcgcgatg aggacaatcc      3600
     tcattccgcg cacccccacc ctgtgctgac ttggcccggg agagagcagg gaggagaggc      3660
     ccccgagccg aacggtggcc caaggccccc gacgaccgga gcaggccctc tgcccgcttg      3720
     tcagacggtg ccaggtgccc ccgaccccca ggacggcccc gaggccactg cgggaaggcc      3780
     gcgcctatcg ccctctgacc tcgaggctaa ccctgtgccg attcgacccg ggagagagca      3840
     gggagaagag gcccccgagc cgaacggtgg cctaaggctc ctgacgaccg gagttggccc      3900
     tttgcccgct tgtccgacga cgccaggagc ccccgacccc caggacggcc ccgaggccac      3960
     tgtgggaagg ccgcccctgt cgacctccga ccccgaggtc gtcggcacag aagacgagtg      4020
     cgccccgcga ggccgcttgg acgaagagcg ccccggggat gcggcccctg gcgaagagga      4080
     tcggccccgc cgaaaggtgc agcggcccgt ctactttgtt agtgaggccc tccgggacgc      4140
     caagacccga taccctcagg cccagaagat gctttacgct attctgatgg cctcgaggaa      4200
     actgcgccat tatttccagg cgcatcgggt cacggtggtt acgtcttacc ccctcggcca      4260
     aatcttgcat aatcgagagg gtactggacg agtggtgaaa tgggcaatcg aactttctga      4320
     gttcgatttg cactttgaac cacgccacgc tatcaagagc caggccctcg ccgattttgt      4380
     ggcagagtgg accccggctc ccgagcccgt ctcgatcccc gaggccagct cggacccctc      4440
     gcagctgcct cacaccgccc actgggtgat gcagttcgac ggctccctgt ctcttcaggg      4500
     cgccggtgcg ggggtcacgt tgacctctcc gagcggagac gtcctcagat acttggtccg      4560
     cctcgacttt cgagcgacca ataatatggc agagtacgag ggactccttg ccggactcag      4620
     agtggcagct ggactgggga tccgccgcct cctggtgtta ggcgactccc agctggttgt      4680
     taaccaagtc tgtaaggagt accggtgctc tgacccgcag atggacgcct acgtgcgcca      4740
     agtacggcgt atggagcgcc attttgacgg gattgagctt cggcacgtgc ccagacggga      4800
     taacatgatg gccgacgaac tctcacggct cgcgtcctcg cgagcccaga ccccaccggg      4860
     cgcctttgaa gaaaggcttg cccagccgtc ggcgcgaccc gaccccatag gggagacgga      4920
     tgcgcctgac cggcccccga ggcccgtcgg agtccaggcc tcgggacccg aggggagcgc      4980
     tcccagctcc cttagattga ttgcttggat cgctgagatc caagcatacc tcacagataa      5040
     gactctaccc gaggaccgcg aagggagtga acgcgtccat cgcatctcca aacgctacgt      5100
     gctggtagaa gggaccctct atcggcgcgc ggctaacgga atcctcctga agtgcattcc      5160
     tcgggaacaa ggcgttgagc ttcttgccga tatccatgaa ggcgaatgcg gagcccactc      5220
     cgcctcgcgc accttggttg gcaaggcctt tcgccagggt ttctattggc cgacagctct      5280
     caatgatgcg gtcgacctgg tccggcgatg cagagcgtgt cagttccacg ccaagcaaat      5340
     ccatcagccg gcccaggccc tgcagaccat accactttcg tggccatttg ctgtctgggg      5400
     gctcgatatc ctgggaccgt ttaggcgggc cccgggcggg tttgagtatc tgtatgtcgc      5460
     gatcgacaag ttcactaagt ggcccgaggc ttatccggtc gtcaagatcg ataagcactc      5520
     cgcacttaaa ttcattaagg gcatcacggc ccggtttgga gtgcctaacc gtattattac      5580
     ggataatggc acccaattca ctagtgaact cttcggcgac tactgcgaag acatgggcat      5640
     caagctctgc ttcgcctcac ctgcccaccc cagaagcaat ggccaagtgg agcgcgccaa      5700
     tgcggaaatc ctcaaaggcc ttaaaaccaa gaccttcaac atactcaaga agcacggcga      5760
     ttcatggatc gaggagttgc cagcggtgct ctgggcgaac cgaaccacac caagccgagc      5820
     aaccggggaa acgcctttct tcctcgtcta cggcgcggaa gcggttctcc catccgagct      5880
     caccctgagg tctcctcggg ccaccatgta ctgcgaggct gatcaagatc agcttcgcag      5940
     agatgacctc gactacttgg aagagcgaag gcggcgcgcg gccctccgag ccgcgcgcta      6000
     ccagcagagc ctgcggcgct accatcagcg ccacgtccgg gcccgatcac tctgcgtcga      6060
     cgacctcgtc ctacgccgcg tccaaacgcg tgctggattg agcaagctct caccaatgtg      6120
     ggagggtccg tatcgagtga tcggcgtccc ccggccgggc tccatacggc tggccacggg      6180
     cgacggcact gagctgccta acccgtggaa catcgaacac cttcgtcgct tctacccctg      6240
     agggggggtc gggtgtcagg tttcgggctc gggccaaccc cgcaccccct cgggcgtgca      6300
     gggttggccg ggggctacca cacatgcact ttcttatttc tcttatttca gtatttcaat      6360
     aaaagcagtt tcaatttcct aaaggctgtg tctgtgccgt tttttccttt tgaagaatct      6420
     tgacttgaaa taggtcactc gtgctcaatc ctgccctcgg gggctcgggt cggctaaaat      6480
     cgccaaacgg ggcccagaac cgagccgtgc cccggggcgt ggtgaactcc gggggggaat      6540
     cggcaaaaac ccacaatcgg gtcacccata accctcggtc accacgttcc cggcctggcc      6600
     agtctcgaca tgtggatctc cccaggcact agccccgacc cgcgcctttt gaggactggg      6660
     acctgtgcac gagcccttaa tcaagctaag acacaaaagg accacggcac agatcatcct      6720
     catctcatac tcacagcaag ataaaattaa cacagaaatt tcttcatttt tgattacaga      6780
     ttaagttgat ctatacaaaa aagaggcccg aaggccttag aaaaagaaaa agaaaaaact      6840
     gaagattggc gggggcctgg gggctcattc cgatgcgccc gggtcgccgg cctcgtcgcc      6900
     actgtcgtcc gcaccaccgg catcgccctc ctcgtcggag ttgggggcga acgcgagccg      6960
     aggggccgag ccctcgaagc tgtggacgat gtggtcggcg gcatcccgga cctcggtccc      7020
     gggagggaac tcatccagcg ccatccatgg ggagaagtcg gggtccctgg cctggtaact      7080
     cgccaggacg agctccaccg ctccttgggc gaggtccctc gaggatgact tgattgtctt      7140
     ctcgagctcc tcggggagcc gttggagagc cccggccatc ttcgagaggc gctgggcgag      7200
     gcctccctgg ttggcggcgt actttacggt ccgccctctc cagaggcccg cttgccgacc      7260
     ggcgcgatct aggcgggaga cggcatccca aagcatgccg ggccctacct cgcccgccaa      7320
     gcggagggct tcgacctccc cggcggacga gtccagcgcg ccctgcagat cggcgatggt      7380
     gtgttcggca gctgcgaggc gggcggctac gtcgctttcg cccgcggccg ccccgccgct      7440
     gcgcgccctc gcgtccagct ccttcgcccg cgcctcgagc tcagcggccc actggtccag      7500
     tgcggccctc tcggcgcggg cgccttccag attacggcgc gcctgctcct cctgcgctgc      7560
     ctcgcggagg gacaggctgt ccgccagccg ttgcgccgcg gcctcggcct cctcgagagc      7620
     tcgctcccgc tcggtgagcg cgtcctcgcg gaggcggagc gcggactcct cttcggcgca      7680
     ggcggcctcg tgcgccgcca gcgttgcctc ccggatggcg acggcggcct cgcggtccgc      7740
     caggtccctc tccacgacgc aggcgcgctc ttccagcgcc atggcgcgcg cctcaagggc      7800
     ctcttcgcgc cgccgggacg ccgcttcggt ctccgccgcc cgctgttctc gggcagcggc      7860
     ggcgtcaagg accccctggg cggcgtcgag cttcttctct agctccgcct cccagctccc      7920
     gtattgaagg cggagggtgt cctgcgcctc gttcatcacg gtggtggcga tgagggcagc      7980
     ctcccgctcc tcctccacct ccctggcgat ctccgccagc accttcttac gggcttcaag      8040
     ctccgagatg tgccggcggt gagccttacg gcccacctcc accatggcct ccaccgagcg      8100
     tcgcccctct tcgacgcgcg cccacgcggc gtcgagctcc gcccgctctg cctgcagggc      8160
     ctccacctgg gcacttaacc catccaacac cgtggtgttt gcggcggcca aggcctgcag      8220
     aaggggctct gcgctcagtg gggcggtaga aggcgtgggg aagagccgcc ttggagagga      8280
     tgccacgcgg ctcggcccgc cgatggacgt gccggactcg gggatgtccc ccggacccgg      8340
     ttggtcctga gcgtcgcccg agggagcggg cccaagcgat gcgcccgcag cctcgtcgcg      8400
     agctgccccg gaagttgtcg cctgagcgtc gcccgaggga gtgggcccaa gcgacgcgcc      8460
     cgcggcctcg tcgcgagctg cctcggaagt cgccaacatc tcgtcctggc gggctcgggc      8520
     ggcctcctcc cgaacggctt cctcggcctg gcgggcccgg gcggcctcct cccgagcgat      8580
     ttcctcggcc tggcgagccc gggcggcctc ctgggcggcc tcctcggctt cccgaaggcg      8640
     atccgcggcc tctcgccggt cagattcccg cctccgggcc tctgcggccg ccggatcctc      8700
     ggcctcagac tggccggact tggaatggcg ggagggacgc gacgggatct cgctgaagca      8760
     gaagaaaaga ccagaagaca aacgagatgg gtgagtgaaa acttgcgttg ggagaatgaa      8820
     tacggccgcg atgggcgaga gacgaacctg cgagggggtc ggttaaacga ccaccttgga      8880
     ggggaaatga ggtttccccg ggatggttct gtctccccca tcttgcggag ccacttcttc      8940
     ttgcgctccc cctcgggctg cgatgtcggc gcggccccct ccgggcgcct gctgctggca      9000
     cgcgccgccc cgccccctcg gggaggagat gggggaggtg ttcctccctg cttcctcttc      9060
     ccccgggcgt cggcagggcg gctgctcccc gggcccccgt cgcggggccc agaagcacga      9120
     ccccctcctg gggtagattg ttccccccgg cggctcccgc ctgcgccgtc gtggccctta      9180
     ggagcccgct cctctgaggc cccgaccgcc atcatgatgg tcaggatgga ggcgcggtct      9240
     ggatcgctgc agagggggag gattccttga ggaatgaggg acgcctccac ggagctgaga      9300
     ttcagcaccc gttggaccac tatcttgaag tcctcaggag cccagtccca tctgactccc      9360
     tggtgggtcc tcatgtagtc ctcggacccg gtgtactccc aggcgccccg ggcgcgccgc      9420
     tggagcggcg caatccggcg acggaggtag tcgccgtaca ccatggcccc tgtgagcccc      9480
     tgggatcgca ggcccgccag gcggtcgagg acggcgtcat agccatcccc cagatctacc      9540
     ggcgcccgcc agctggaggc ctgcgccggg ggctggctcg gaagtcggag gcgcgcttcg      9600
     tcggcaaggg gggtgtagaa ccagtcgctc ttccagtcgt cccacttctt gcggagggcg      9660
     caggggatgt agcggttcag caccggcccc cgcggctgga agtagcagcc accgactacc      9720
     gatggcggcg acaccgactg cacggtgaag aaccaccgga acagccgaag agatgggcgc      9780
     accccaatga acatctcgca caggtgcgcg aagatggcca atgtcatcac cgcgttgggg      9840
     gtgaggtgcg ccatctggag atcgtagaac tccagaacat ccatgaagaa agaagaaaat      9900
     ggcggaacca gccctgccat tgcgaagggg aggaagaaga cggaccgccc cgggtagtct      9960
     ggcgccgggc gtccctcgcc cagcgtgact atctcccggc cggtggcaga ttccggcatg     10020
     aagcggcgcg gcagcccagc ctgcctctcg ctcacgatgc gggaaggcgg cagcacgcta     10080
     ccatcgagca gagcggagcc ccgtgccatg gcgccggaag gaagagaaga ttgagagcga     10140
     gtgcgtgtgg cgaaggtagg gcacaggaaa gaaagagtta gggcgcaagc ggcgaaggca     10200
     aggggaataa tggcgaaagg aaggaaacaa atcccttcct cagtgccttt atacccttgc     10260
     caacgctgtg cccggctcct cgtttctcgc gcccactgtt tcgccccctc gtttctcgcg     10320
     cccacgcttc cactaatccc attcgcccgc ttgcggcgca tgaggtggat atgcggttgt     10380
     ggcagtcgag atagatcata tcgtgcgcgc gttaattacg ctcgccgacc aaagcgacgt     10440
     taccatatct ccagacgaaa cgaatcggca cgtccagatt cgtgcgctac tcgagtaatg     10500
     tggcagtctt gaagagaccg ctcattattg acggccgagt taccattgcc gatgtgcgtg     10560
     atttgtgacc gttgggtttc tgcccaattg tggagaccgg tcccacctgt caccaggcct     10620
     taggagtggc gtcacgcccg accgcttccc ttgaggaggg cgatcgccct ggcataacgc     10680
     cgggggctac                                                            10690
//
ID   SZ-8        repbase; DNA   ; ORY   ; 5498 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice retrotransposon SZ-8.
XX
KW   LTR retrotransposon; SZ-8.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5498
RA   Jiang N., Wessler R.S.;
RT   "SZ-8: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 123-123 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-8 has 352bp LTRs.
XX
SQ   Sequence 5498 BP; 1608 A; 1299 C; 1129 G; 1462 T; 0 other;
     tgttagggct cacaaggatt cactcaagca cacacacaat ttggcaacac tatgatagtt        60
     tcctctcaga tccaacagga tcgagccgct gccgcctacg cctccaattg ccaattcaat       120
     gtcttaattc aattcaacag tatttaacta acaccaacat cacgccagct cacatgcgag       180
     caagtgactc acgcaaccca gtctgggcct tggaccttgg tattgggcct cctcagacga       240
     gctgaacgac agccccaagt cttcagcttg tcttcctgct tcttttgcct tctcaatact       300
     tggctccctt ctcttgtcct tgtcttcttc aggatcacac ttcctgacaa gcccttcccc       360
     ttgaaaattg gcttgtcccc aagccaatgc agctggaaaa cgggaacgca gatcctccat       420
     atcttcccaa gtggcttcct ctgggagaga atcagaccat tgagttagca cttgagtgac       480
     agttgaatta cctttcttag ccaaacgcct gtccaaaata tgcaagggaa actgcaatgt       540
     agaagtatca gtgggcagtt tggattgaac aagaccagag aatccaacag cggacttcaa       600
     ttgggacaca tggaacactg ggtggataga actatgaggt ggtaattaaa gtctataagc       660
     cacactgccc acacgctaaa tcacttgaaa aggcccaaaa tacttgaatg ataatttgtg       720
     attagctctg acagccacag aagtctgtat atacggctga agtttcaagt atacccaatc       780
     accaatagca aaagttctga aacttctttt cttgtcggca aagtgtttca tttgctgctg       840
     agcgcggtga aggtgttgct gtacaagttg ttgcatcaac ttcttttcct tgaaccatgt       900
     atccatctca ggaatagaac agtctgaaat accaatgcca aaatggtttg ggggatgacc       960
     ataaaggacc tcaaatggag tagcatgaat ggcagagtga taggatgtgt tataccaata      1020
     ctcagcgaga tgcaaccatg cagcccattt ggaaggaact gaatgaacaa aacaacgcaa      1080
     gtatatttcc aggcattggt taaccctttc ggtttgacca tcggattgag gatgatatgc      1140
     agaactgaaa tgtaacttgg tgccagctcc ctcaaacaag tgttcccaaa gttggctagt      1200
     aaaaacctta tctctaaaaa aaatgataac caggggcaaa ccatgtaact taaagatatt      1260
     tttcatgaac agcttagcaa cagatagagc taaaaatggg tgagctaagg gaaggaagtg      1320
     actgtactta gagaatttgt ctacaacaac caagatgcaa tcagaatgct cagacctggg      1380
     caatccttca ttgaaatcca aggatatagt ttgccaagct ccttcaggaa cagggagagg      1440
     tttaaggagg ccagggtact ttgctctatc aggtttggcc tggagacaaa cttggcactg      1500
     gtgaacaaag gtttttacca ttttcttcat gtttggccaa gcaaacagtt gtttgatttt      1560
     cctataagta actagaaagc cagagtgtcc cccaatggga ctgtcatgca gtgcagacat      1620
     gagttgaagc tgtaaattat cattgttacc aatccaaact ctgcccttat atttcagtaa      1680
     cccagcagag agagaaaaat gcttcctgga agttggacag acagataatt cagtgaggaa      1740
     ttgaagggaa aagggatcct gagcataccc ttttgttact tcttgcaacc agagtggggt      1800
     ggagctggaa atgtgataca attcactgtt atcatcctga aacttgcgag agagagcatc      1860
     agctgcagca ttactggtac cttttctgta acaaatttta taattgaggc caaggagttt      1920
     agtgaaagct ttatgttgcc agggtgtgtg taacctttgg tcagaaaggt gcataagact      1980
     atgatgatca ataaggataa taaactcccc caactgcaaa taagacctcc attgatcaac      2040
     tgccatgagg attgccatgc actccttctc ataagtagac aagccttttg ttcttggacc      2100
     caaggcctta ctaatgaaag cgataggatg attgtcttgt gataacatag ccccaatacc      2160
     agcttcagaa gcatcagttt ccacaatgaa gaccttcttg aaatcaggca aggctaggac      2220
     cggggcagtc accagagcct acttaagctg gttaaaagct gagtcagttg cagtggtcca      2280
     cacaaaagga acatccttcc tcaaaagatt tgtaaggggc ttactaatga gaccaaatcc      2340
     cttcacaaat tttcgatagt aaccggccaa tcccaagaaa ccccttaatt tcttgatagt      2400
     ggttggtact ggctagttta acacttcctg gatcttgctc tgatcagtat ggacaccggt      2460
     agcactgatg gtgtggccaa gataagtatg ttgttgttga gcaaatgagc acttgctcaa      2520
     tttaaccttc cattgatgtt cagacagtaa ggctagtact tggtgaatat gatccagatg      2580
     ggactcaaaa tcagggctgt agatcaagat atcatcaaag aactgttttc agagtatcat      2640
     tcattgcact ttgaaaggta gccggagctc ccgtcagccc aaaagacatt actatgtatt      2700
     catagtgtcc agtatgagtt tggaaagccg tcttatactc ctcaccaggg gccattctaa      2760
     tttggtgata cccatctcgt aggtctaact tagaaaacca cttagcctga gataattcat      2820
     ctaaaagctc atcaatgatt ggcatgggat aagtaccctt gatggtaatg gcatttaatt      2880
     ttctatagtc aatgacaagt ctccaagtac catccttctt cttgaccaac agagctgggg      2940
     atgagaaagc actgtggcta ggctggataa ctccagattt caacatatca gaaatttgct      3000
     tttcaatctc atccttaaga gcaggattaa agcggtatgg cctcaaatta acaggtgttg      3060
     ccacaggtac aagaggaata ctatggtcac aatatcgctt aggagggagt tcagtaggtt      3120
     ctgaaaaaac atcctggaac ttgagaagta aattatgtac tgcttcaggc atagtgtcac      3180
     agatttctga aacagaagat gtcaattgga ccaaatacag aatagacccc tttctagcca      3240
     tacccaagca ttgttcagca gagatagcat tgcaactgtt agtctgggaa gttatacctt      3300
     gcaacctgac aggctggttg ttaacttgaa tttccatcca tttctgtgac caatccacct      3360
     gcataggact gaattgctcc aaccagtcca tgcccaatat gatatcatag ccacccaagt      3420
     tcaagagtct gaaattacta gagaaagaat gcccttgcat ccaccactta caattagcaa      3480
     tctcatggga acataacaag gacccaccat cagctagttg cacagacaag ggcttcctga      3540
     gtggagaaac acccaccatc ttagaaccaa ctgtttcatc cataaaggaa tgagtactgc      3600
     cagagtctat cagcatcaat aattcagtac cctgcaccca gccgatgagt ctgatagaac      3660
     gagaggattc agtcccccaa actgcctgtt gagaaataga catcaaatct cccacttcat      3720
     caatttcttg ttctccacca gaagattcaa tttatgtagg agattttgag tgtaaaatat      3780
     caagaagctc ctgcacaaca tgtaattgca ctgctgtggc acatttatga tccttacccc      3840
     atttttcacc acaggtgaaa cagagccctt tagacctgcg ataggatttc agagctgaca      3900
     gtctgtcatc tcttgctctt gcagcttcag tgccccttct atcttcagta atttgaggag      3960
     agaagatttt ctggggtgtg gaggcctgtc caactatcgg ggctggtgag ttgtttctaa      4020
     tcataactga attgtttggt ctcttgtagc cctggaactt aacaccttcc atagcctctt      4080
     cctgaagtaa tgcgactgag caggttgaat ccaaatcttg tggcctttga accaaaacta      4140
     ccattctgat gtcacttcta agcccttcaa taaacttagt cacaaagtaa acaggcaaca      4200
     gggagttgta ataagctagc aactgatgca tcagactatc aaatttttcc acatactctg      4260
     aaacactgcc ctcttgctta atatggaacc attgtctgat aagagcttgc tgcctatcct      4320
     taaaaaatct ggagcatacc aaatcacaca aagacaccca agaaatccca ctcatctgat      4380
     ttctaacaga ttgaaaccaa aaggcagcat taccagaaaa attgagtgtt gcaatcttaa      4440
     cccagtgaac tggcaatatt ccatagacat caaaatattg ttcacagttt gacttccaca      4500
     tttgggggtt atcaccagta aattgagggc aagtcatagg aggaatagca ctacttagat      4560
     tcattgtccc cattccgtta ccaaaagtgg gtgatgccga atcgcaattg aaaggaatag      4620
     gggaagggga aaatttctca ggcgtaccat taggagtaaa cattcccgca acacctccga      4680
     actgctcctc cttagctcct ccttgaacac ccgaagcact tgcagcagag aatggttcaa      4740
     acttgacttg ccgcatcgtg ttgccttcca gctgctcgac cttggtgctc aaggactgca      4800
     gcgactcacc tagttcttcc accttcttct ccatcgccgg tatgcggccc tcgaccgtct      4860
     tcttcaactc caagtagtcc gccctggtac gctcctccgc ctccatcctc ttcttctcgt      4920
     tgtcagcaat ggtcttgaac aagagatcaa acttggcgtc tagatccatg gctagttttg      4980
     gaccgtaatc cctcacatgc tctccgaatt tagccaacca gattgaggga gccgaaactt      5040
     ttgtggattt ctcaccgccg aagcagccaa atcccacctc gctctggaga aaaatttaca      5100
     gccaaatcaa gaggaaatgc agcacggaag ggctctgata ccagattgtt agggctcaca      5160
     aggattcact caagcacaca cataatttgg caacactatg atagtttcct ctcagatcca      5220
     acaggatcga gccgccgccg cctacgcctc cagttgccaa ttcaatgtct taattcagtt      5280
     tacagaacag tatttaacta acaccaacat cacgccagct cacaggcgag caagtgactc      5340
     acgcaaccca gtctgggcct tggaccttgg tattgggcct cctcagacga gctggatgac      5400
     ggcccaagtc ttcagcttgt cttcctgctt cttctgcctt ctcaatactt ggctcccttc      5460
     tcttgtcctt gtcttcttca ggatcacact ccctgaca                              5498
//
ID   RETROSAT2_I repbase; DNA   ; ORY   ; 6208 BP.
XX
AC   AF111709;
XX
DT   08-NOV-2002 (Rel. 7.1, Created)
DT   08-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   Oryza sativa gypsy-type retrotransposon RETROSAT2_I, internal
DE   region.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; RETROSAT2_I; internal region.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-6208
RA   Llaca V., Lou A., Young S., Messing J.;
RT   "Direct submission.";
RL   Direct Submission to Genbank (05-DEC-1998).
XX
DR   Genbank; AF111709; Positions   29183   35390.
XX
SQ   Sequence 6208 BP; 1637 A; 1549 C; 1613 G; 1409 T; 0 other;
     ttggtatcag agccgacctt gaccgtagga caagccaaat ggaaaaacct aagagccctc        60
     tgaatccttt tcattgcata tgttctttgc aattggattt gttccgggaa aattgggatc       120
     tgttcttgtg gttcaaggga aaaatcttgg tcgctcgttt aagtgagatt tttcaaaacg       180
     agtcagtcta gggttttagt aaaactattg agatttattc gtcagtcagt tgggatttga       240
     tgggtgaaat gcattaggtc ctagctctgt aacatgggtt gcaaggtatt tatgctttgt       300
     tcgttattat taatatgtat ctaatttccc attattttat cgttatgtga gtccgtctta       360
     tttattcgct ctcatgcaaa atgatctatg cataaaattt tgctcttatt tgattccctc       420
     atttgagtct tttattgctt tatttaaatt tggatttgag catgcattga tcctactcct       480
     ttgtcttctc tagatggccg gtcacccacc caaccaccgc ggagaaggca tgatcgattt       540
     cgtggcagag ttggcacgca tgacactggt ggtgggctac cccgacgcgc cggagtacac       600
     gaccatccca ccgctcagtg gcgagcttcc tcaccgtgtc cgcttggagg tccatggcta       660
     cgtggggact tgcctcgcta acatggcggt cgaggcatca ggaggcacag cagatcacgc       720
     ctgtcaggag gcagcctacc tgatgatggc cagactacgg gagcgccaca actacatctt       780
     ccacgacacg gcgtaccgct accaccccag tcgagcccac agtgatggcg tcagctcctt       840
     ccgtccgaca gctggcgaga acgacaccac cttcggtcac atgtgtgctg tgatgagggg       900
     tttggacagg atgcactcgg acctgcacaa ggcgaccaag gccttgaacg atgggaagct       960
     catgaggatc gtcgctctga aggacgagat agcgcgcctg aagaaggaga atgctcagtt      1020
     gaagggtctt ccagcgccag gaggagtccg gatccgcact acgccccgta agaggacgac      1080
     tgcacccgtg cgcatccagc ttgcgcccag gaacccacct ccagcagcag ctcccgcagc      1140
     acctccagtt ccgcccgcag ttcctgcagc tccagctcca gctcccgcgt tcactctctc      1200
     cttcgctcca gcatcagccg ccagaggtcc agccagtggt accggaggtt ggttgtctgc      1260
     tactcccagt ggcagcggcg agactgatct gtcaggttcc aggagtcgct cagagggacc      1320
     tggtgatgag caggaggacg ccttcgactc caccgaccgc aggagccgtt ccgagcatta      1380
     ggctcgtttt cccattagtt tatcgattgt ctagtttctg cttgttagtt tgtgtgttta      1440
     ggttgcttgt ttggggtcag tcgacggtcg atatcatgtg cctatgatat ggctgtctta      1500
     ataaggatgt ttgcttgctc ttttaagtgt tttaattcag atcagaacaa ttgcagtttt      1560
     aattcctata taataaagct tagctcttga gcatctgttt ttcttctttt ccccgtctgc      1620
     tcttccctcc agatggtcta caccaggact ggtagccgcg caacaggcga gggtagcaac      1680
     ggtgaagaac gcgctgatgg tgtacacccc aacagtgatt ccggcaatgt tccgccacca      1740
     cttcccgaaa atccgaccct tgcccaagtt atggcgcatc agactcagat gatggcggcc      1800
     atgatgcagc agatgcagca gcagcaccag cagatgcacc agaggatgat gcagcacgtc      1860
     gaacagcagc accagcagtt tggtccccct ccccctcagt ccaagttgcc tgagttctta      1920
     cgtgtcaggc cacccacctt ctccagcacc accaacccta tggaggcgaa cgactggctc      1980
     catgcaatag agaagaagct gaatctcctg cagtgcaatg atcaggagaa ggtcgctttc      2040
     gccacacacc agcttcaggg tcctgcgtca gcttggtggg acaaccacat ggccacccgc      2100
     ccaccgggca ctgaagtcac gtgggcagag ttctgccgta gcttcaggaa ggcacaggtg      2160
     ccagatgggg tcgtggcaca aaagaagagg gagtttcgtg cactccacca gggcaacagg      2220
     actgtgacag agtacctcca cgagttcaat cgcctcgcgc ggtatgcacc agaggatgtc      2280
     cgcaccgacg ccgagaagca ggagaagttc atggcgggcc tggatgacga actgaccaac      2340
     caactgatat ctggggacta cgccgacttt gagaggctag ttgacaaggc aattcgtcag      2400
     gaggaccaac gcaataagat ggacaggaag aggaaggccg cgcagttcag ggcacctcag      2460
     ggaagtcacc agaggccgcg cttcactccc ggacagcagg gtggacctac caccatgatc      2520
     gtccgtcagc accgcccgtt caactccagc aacttccacc agggctccag tggcagccag      2580
     aaccaccatg gaagtcagcc caaccgcggt gcagctccac gcccaccaat ggcaccggca      2640
     cagtcaggcc agcccgcgca agccaagaag gagacgggag taaaaccagg gtcttgcttc      2700
     aactgtggcg agcttggcca cttcgctgac aaatgcccga agcccaggcg tgccgggcca      2760
     aggtttatcc aggctcgtgt caaccacgca tctgcggagg aggcacaagc agcaccagag      2820
     gtcgtactgg gtacgtttcc tgttaactca atccctgcaa cagtactttt cgattctggt      2880
     gcaacgcatt ctttcatttc aaagaaattt gtggggatgt atgggttaag gaaagaagag      2940
     cttcgcacac caatgagagt tcataccccg ggaaatagtt caacctcagt cagttttagc      3000
     ccttcagtgc taatagaaat tcaaaggtca ccatttctag ccaacctcat ccttctcgaa      3060
     tccaaagatc tagatgtcat tcttgggatg gattggctga ccaagtttaa gggggtcatc      3120
     gattgtgcga accgcaccgt caccttgacc aacgagaagg gagaaaccgt ggtgcacaaa      3180
     tcactagtct caccaaagca aggggcctcc ttgaatcaga ttgaagcaga aatcccagtg      3240
     gacaccatgg agaagaactt gaggaaattg gaagatatac ccatagtctg cgaatacccg      3300
     gaagtgtttc ctgaagacct cactaccatg ccacccaaga gagagattga attccggatt      3360
     gacttggcac cgggaaccgc tccaatttac aagagaccgt acagaatggc ggccaacgaa      3420
     ttagcggagg tcaagaagca agttgatgag cagctgcaga aagggtacat acgaccaagc      3480
     acttcacctt ggggcgctcc ggtcattttt gtggagaaaa aggataagac gaagaggatg      3540
     tgcgtcgatt atcgcgcact taacgaggtc acaatcaaga ataaatatcc tttgccgcga      3600
     atcgacgatc tatttgatca actgaaagga gctaaagtgt tctctaagat agacctgcga      3660
     tcaggctacc atcagttgag aatccgggaa gaggatattc cgaagacggc cttcaccact      3720
     cggtacgggc tatatgagtg cacggttatg tccttcggac ttactaacgc acccgcattc      3780
     ttcatgaatc tgatgaacaa agtgttcatg gaatttctgg acaagtttgt tgtggtattc      3840
     atcgacgaca ttcttatcta ttcaaagtcc gaggaagaac atgaacaaca tctccgtcta      3900
     gtactcgaga agttgaagga acaccagcta tacgccaagt tcagcaagtg tgacttctgg      3960
     ttgacggaag tcaaatttct gggccatgtc attacagctc agggtgtagc agttgatcca      4020
     tcgaacgtgg agtcagttac caaatggacc ccacctaaaa cagtgtcgca gattcggagt      4080
     tttcttggac ttgcgggtta ctaccgtcga ttcatcgaaa atttctccag aatcgcccga      4140
     cccatgactc agttgcttaa gaaagatgag aaatttaaat ggacaactga gtgcgataag      4200
     agtttcgagg agctcaagaa gaaattagta tccgcaccag ttttaattct gcccgacccg      4260
     acgaaagact tccaagttta ttgcgatgca tcccgtcacg gacttggatg tgtcctaatg      4320
     caagagggca gagtggttgc atatgcctcg cggcagttgc gtccacacga aggaaattat      4380
     ccaactcatg acttggaatt ggcagcagtg gtccatgctt tgaagatttg gaggcactat      4440
     ctgattggca accgctgcga agtatatacg gaccataaaa gcctgaaata catcttcacc      4500
     caaccggacc taaaccttcg acaacgaaga tggttggagc taatcaaaga ctatgacatg      4560
     agtatccatt accacccggg taaagccaat gtggtggcag acgctttaag ccggaaaaat      4620
     tactgcactg ccctatgcgt cgagggcatg tgtgaggaat tgcggcagga gtttgaacat      4680
     ctcaacgtgg ggattgttga acacgggttc gtagccgctc tggaagcacg gcctacgctc      4740
     gtggatcaag ttagagccgc tcaagtaaat gatccggaaa tagcagaact gaaaaagaac      4800
     atgagagtcg gaaaggctcg ggatttcctt gaggatgagc acggcacaat ctggatggga      4860
     gaaagattgt gtgtacctga cgacaaggaa ttgaaggatc tgatactcac cgaggctcat      4920
     cagacccagt actccattca cccaggcagt actaaaatgt atcaagacct caaagaaaag      4980
     ttttggtggg tcagcatgag gagagaaata gccgagttcg tcgcactctg cgatgtttgc      5040
     caacgagtga aggcagagca ccaaagaccc gcaggtttac tccaacctct tcaaatcccg      5100
     gaatggaaat gggaggagat tggaatggac tttataacgg gactgccccg gacatcatcg      5160
     ggacatgatt caatctgggt agtcgtggat cgactcacca aggtggctca ctttatacca      5220
     gtacaaacca cctatacggg aaagagattg gcagaattgt acctcgcaag gatcatgtgt      5280
     ttgcatgggg tacccaggaa gatagtatcc gatcgaggta gtcagttcac ctcaaagttt      5340
     tggcagaaac tgcaggaaga aatggggacc cgcttaaact tcagcacggc ctatcacccg      5400
     caaactgatg gtcagaccga gcgagtcaat caaatcttgg aggatatgtt gagagcttgc      5460
     gcccttgatt ttggcggagc ttgggacaaa agcttgccat atgcggaatt ctcgtacaac      5520
     aacagctacc aggccagtct acagatggca ccatttaaag ctttatacgg ccggaagtgc      5580
     cgcacacctc tcttctggga tcagacaggc gaacgtcaac tattcggaac agaagtatta      5640
     gcggaagcag aagagaaagt cagaatcatc agggaaaggt tgaggattgc tcagtctcga      5700
     cagaagagct acgcggataa ccgtcgaagg gagctcactt ttgaggcggg agattatgta      5760
     tatcttcgtg tcactccgct ccggggagta caccgctttc agacaaaagg caagttggca      5820
     ccacgcttcg tgggaccata caaaattttg gaacgaaggg gagaagttgc ttatcagcta      5880
     gaacttccgt ccaacatgat cggcatccat gacgtgttcc acgtatccca attaaagaag      5940
     tgcttaaggg tacctgagga acaggctgat tcggaacaca tcgatatcca ggaggacctg      6000
     acctatgtgg agaagccggt tcgcatactt gataccagcg aaaggagaac cagaaacaag      6060
     gtcaccaggt tttgtcgagt tcaatggagt catcattcgg aagaggaagc aacctgggaa      6120
     agggaagatg agttgaaagc cgcccatccg cacctcttca ccagctcctc cgaatctcgg      6180
     ggccgagatt ccgtttaagg ggggtagg                                         6208
//
ID   COPIA2-LTR_OS repbase; DNA   ; ORY   ; 962 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   O. sativa Copia LTR retrotransposon - LTR consensus.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; COPIA2-LTR_OS;
KW   reverse transcriptase.
XX
OS   Oryza sativa (japonica cultivar-group)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
XX
RN   [1]
RP   1-4
RA   Gentles A., Jurka J.;
RT   "Rice Gypsy LTR retrotransposon.";
RL   Repbase Reports 5(3), 48-48 (2005).
XX
CC   [1] (Consensus)
XX
CC   LTR corresponding to COPIA2-I_OS.
XX
SQ   Sequence 962 BP; 206 A; 248 C; 248 G; 260 T; 0 other;
     tgttggaatt aatgaatggg ccttagccca ctcgaagatt aattctttgg aaaatcacaa        60
     aagcccacct catgggatgg catgcatgtg gagtttagta ccaccttgct tattctagga       120
     gagggggacc tccttaaaag ggaggatgcc ctcctagcca cttgaagcat gtgtggtgga       180
     gagaagaggg gaaacacacg cgcgcgctcg ctcgcctcgc ctggcggcag ggcaggcggc       240
     gcgcgtgcac gacgtacgcg tcgaatggtc cgaaaaattg gctcctcacc cttgcgcaga       300
     tgcagcctcc ttttgcagtt ttgttttgct gcaaattcgg attcgttttt gttttggaaa       360
     cgttccgaaa aatccggtgc gtgcaaacgg cgtggagtcc ggataagtta cgcgcgactt       420
     atccggttcg gttacgcgca gtagagatcg tgcgggcgcc ctgatcaagc gacccttctc       480
     tatataaacc gacccgccgt cttcacgcaa tatatgcgaa aatcaatcta gggtttgcct       540
     cctactctgt actgcgccgt cgctcgtaga ctactccatc ccgctcgccg gcgtgcacca       600
     gcgatcggga gagcaggtct ccggaacctc tgcctttgac gtcctgcacc gggagaaggc       660
     ggcaataagg tttttgggaa gcgcttcgcg cgactgctcc ctgttcgttc gcgacggctc       720
     gccttcctct tcgctcgcgt gtttcgtgcc ttcgtagaca cctgcgaaaa gtttcgacca       780
     agcagccggt cttttcgtca cctcggtacg tgttcaatat gttgcgcata tttgatctgt       840
     tcatgttata ctgcgtagtt tacatgtgta gatctaatga tgcgttcatg ctagttttca       900
     tctgtaatgt catgatttat ttatggaata aattaaatca ttatatgcct ataatctcaa       960
     ca                                                                      962
//
ID   RIRE3_I     repbase; DNA   ; ORY   ; 5752 BP.
XX
AC   AP008211;
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   30-AUG-2005 (Rel. 7.06, Last updated, Version 3)
XX
DE   Internal portion of the gypsy-type retrotransposon RIRE3.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   endogenous retrovirus; GYPSY superfamily; Met tRNA as PBS;
KW   RIRE3_I; RIRE3_LTR; gag; pol.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RA   Ohtsubo E.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (22-MAY-1998). Eiichi
RL   Ohtsubo, The University of Tokyo, Institute of Molecular and
RL   Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-0032,
RL   Japan (E-mail:eohtsubo@ims.u-tokyo.ac.jp, Tel:+81-3-5684-3269,
RL   Fax:+81-3-5684-3269).
XX
RN   [2]
RP   1-5752
RA   Jurka J.;
RT   "RIRE3: Annotation of a recently inserted copy from rice.";
RL   Direct Submission to Repbase Update (30-AUG-2005).
XX
DR   GenBank; AP008211; Positions 9459207 9464958.
XX
CC   The original sequence (ref. 1) was replaced by a very young
CC   copy of RIRE3 with identical LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..992
FT                 /product="RIRE3_I_1p"
FT                 /translation="MAGSVTRRGLDMTGFVLELRGMCVVLGYPHGVDYQAR
FT                 PLPEQEGEDAEPHAGWEVTAVILSGSPERTSLAVTAGGDSFPAACQNAALL
FT                 AIGTLHQRYPDELQHSPYRYHPRRGGARDHATFRDASSEDDATVVHLARMV
FT                 EAYDAARIDFHQMVRRGMVENNMKILELRQENLQLKKDLDALEAQLHQLKI
FT                 AQGEGSRPKRRRVCRSQKITARKSTSRPELVRQSLAWTCFVETPRAEPAPV
FT                 VPQEGEASGVGSSEGALLLTFRPGPSQR"
FT   CDS           1133..5737
FT                 /product="RIRE3_I_2p"
FT                 /translation="MNQFNSSDKFKNNSSRGWLVLIVSSPSLFAGSVWGFQ
FT                 MVTTRRNVNTGEGNQPEGSNPNPQGNPPPPPPPDTNAILTQILAQQANMMN
FT                 AFLHHLQNPPQQNAPPPPPQHSKLAEFLRIRPPTFSSSNNPVDALDWLHAV
FT                 GKKLDTVQCSDEEKVVFAAHQLQGPASLWWDHFQATQPEGQPITWTRFTAA
FT                 FRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLARYAPEDVREDEE
FT                 KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLAN
FT                 FRNQQGANQRVRYTNPYPGGSSSQQQQQQPRPAPRPQFVVRVPQQQQQQNQ
FT                 QGTRAPRPPTPAVQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQ
FT                 APPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGA
FT                 SHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPF
FT                 PSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFAPP
FT                 TSVRSSELHQISLSEIPIVREFGDVFPEELPGMPPKREIEFRIDLAPGTTP
FT                 LHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKR
FT                 MCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIRE
FT                 EDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFI
FT                 DDILIYSQTEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS
FT                 AKGVAVDPETVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMT
FT                 QLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQG
FT                 LGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNR
FT                 CEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADAL
FT                 SRKSHCNTLNVRGIPPELNQQMEALNLSIVGRGFLAALEAKPTLLDQIREA
FT                 QKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPESRELKQLILQE
FT                 AHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQR
FT                 PAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIP
FT                 VKTTYGGNKLAELYFARIVSLHGIPKKIVSDRGSQFTSHFWKKLQEELGTR
FT                 LNFSTAYHPQTDGQTERLNQILEDLLRACVLDFGKTWDKSLPYAEFSYNNS
FT                 YQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRIIRDN
FT                 LKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRYV
FT                 GPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIE
FT                 VREDLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELK
FT                 AAHPDLFASSSESRGRDSV"
XX
SQ   Sequence 5752 BP; 1410 A; 1509 C; 1517 G; 1316 T; 0 other;
     agttggtatc agagcctccc ttgaccctag gacgagccgt agatcccaag ccttagcaat        60
     attttcaaaa ataaaaatcc tttgttattt gtgaaaaccc gctattctct cttgtcttgc       120
     tgcttcattt atcgtcaaaa tctggtcttt aaaaatgttg tttctctttt tgtttttgtt       180
     tgtagatggc cggcagcgtt acccgtcgtg gtttggacat gaccggcttc gtcttggagc       240
     tgcgaggcat gtgcgtggtc ttgggatatc cacatggagt ggattaccag gccaggccgc       300
     tcccggagca ggagggtgag gatgcagagc ctcacgctgg atgggaggtc actgcagtga       360
     tcctctccgg ctctcccgag cggacttcgc tggcagtcac cgcgggcgga gactccttcc       420
     ccgccgcttg ccagaacgcc gctctcctcg ccatcggcac tcttcaccag cgctacccgg       480
     acgagttgca gcactcgccc taccgctacc accctcgtcg cggaggagcc cgcgaccacg       540
     ccaccttccg agacgccagc tcggaggatg acgctaccgt cgtgcacctg gcacgcatgg       600
     tggaggcgta cgacgcggct cgtatcgact tccatcagat ggtgcgtcgt ggcatggtgg       660
     agaacaacat gaagatcctg gagctgcgtc aggagaatct gcagctcaag aaggacctcg       720
     atgcgttgga ggcgcagctg catcagctca agatcgccca gggagagggc agccgcccca       780
     agcgtcgccg cgtctgccgc agccagaaga tcaccgcccg caagagcacc tccaggcctg       840
     agcttgtccg tcagtccttg gcgtggactt gcttcgtcga gacccctcgt gccgagcctg       900
     cgcccgtggt tccccaggag ggggaagcct ccggcgttgg tagctcggag ggtgcgctgt       960
     tgctcacctt ccgtcctggc ccgtcgcagc ggtagacgag cagttagtag gcttgcgcgt      1020
     gtgtttttcc tcgtttgtct ttttgagttg tgtggggcat ggttacaccg gtgtgtggtg      1080
     caactatgtc ggagcctgtc ttattttgtt tgcctaagca acttgaactt taatgaacca      1140
     atttaatagc agtgataaat ttaagaataa tagtagtcgt gggtggttag ttttaatcgt      1200
     cagctctcct tctctgtttg ctggttctgt gtggggtttt cagatggtga cgaccaggag      1260
     aaatgttaac accggtgaag gcaaccaacc cgagggcagc aaccccaacc cccaaggcaa      1320
     cccacctcca ccaccaccac cagacaccaa cgccattctc acccaaatcc tcgcccaaca      1380
     agccaacatg atgaatgctt tcctccacca cctccaaaac ccgccacaac agaatgctcc      1440
     accaccacct ccccaacact ctaaactcgc cgagttcctc cgcatccgcc cacctacctt      1500
     ctctagctcc aacaaccctg tggatgcttt ggattggttg catgccgtgg ggaagaagtt      1560
     agacacggtg cagtgcagcg acgaagagaa agtcgtcttc gccgcccatc agctgcaggg      1620
     acccgcgtct ctctggtggg accacttcca agctacgcag cccgaggggc aaccgattac      1680
     ttggactcgc ttcaccgccg ctttccggag aacccatgtg cccgccggag tcgtggccct      1740
     caagaaaaga gaattccggg agctgaagca aggcaaccgc tccgtgatgg agtatttgca      1800
     tgagttcaac aatctagccc gttacgcccc agaggatgtg cgggaagatg aggagaagca      1860
     ggagaagttc ttggcaggaa tggaccctga gctgtctgtt cgtctagtct ctggagacta      1920
     tccggatttc caacgactgg tggacaagag catccgcttg gaggccaagc acaaggaact      1980
     ggaatcgcac aagcgccgcc tggcgaattt ccgcaatcaa cagggtgcta accagagggt      2040
     ccgctacacc aatccctacc cagggggatc ctcctcgcag cagcagcagc agcaacctcg      2100
     cccagcgccc cgacctcaat tcgtggtgcg cgtcccacag cagcaacagc agcagaatca      2160
     acaagggact cgtgcacccc gtcctcctac gccagcggtg cagcccgttc aaggccgcag      2220
     ggacgcttca ggtccgcagc ggctgtgctt caactgcttc gagcccgggc actttgcgga      2280
     taaatgcccg aagccaaggc gtcagcaagg ccaagcgcct ccccgctcca acaacggcgg      2340
     gaaggatgtc attcggggtc gtgtgaatca cgtgacggcc gaggacgtgc tgacaactcc      2400
     agacgtcatc gttggtacgt tcctcgttca ttccatccct gctacaattt tgttcgactc      2460
     tggagcttcc cactcgttta tatctgtgcc attcgtgggg aaaaatcagt tgggggtaga      2520
     aaggcttaga aaccctctgc tcatcaccac ccctggcggg gttatgacag caaagtatta      2580
     tagccctgcc gtccctatag aaattcaggg gattcctttt ccttcggacc tgattcttct      2640
     agacacaaag aacttggatg tgattcttgg gatgaattgg ttggcacaat tccaaggagt      2700
     agtggactgc gcgagacgca ctgttactct gtaccgaggg ccagaacaac cagttgtttt      2760
     ctttgcacct ccaacctctg tcagaagttc agaactgcat cagataagtc tgtcagaaat      2820
     ccccatagtc agagagttcg gagacgtgtt tccggaagaa ctacctggta tgccgcccaa      2880
     gcgagagatt gagttccgga tagatcttgc tccaggaacc actcctctgc acaagcgacc      2940
     ctaccgtatg gcagcaaatg aactggccga agtaaagaaa cagttggaag agttgaaaga      3000
     aaaggggtat atacgtccga gtacttcccc atggggtgct cctgtgattt ttgtagaaaa      3060
     gaaagacaag acgaagagga tgtgcgtcga ctacagagct ctcaatgagg tcaccatcaa      3120
     aaacaagtac cctcttcccc ggatcgatga tctgttcgat cagcttaaag gtgccactgt      3180
     attctccaag attgatcttc gttccggata tcaccaatta cgtattcgtg aagaagatat      3240
     tccgaagacc gcattcacta cgcgatatgg actgtatgaa ttcacggtga tgtcgttcgg      3300
     cttaaccaat gctcctgcct tcttcatgaa cttgatgaac aaagtgttca tggaatactt      3360
     ggataagttc gttgtggttt tcattgatga cattctgata tactcacaaa cagaggaaga      3420
     ccatcagcac catctccgtc tggtgttggg aaagttgcgg gaacatcaat tgtatgccaa      3480
     gcttagcaag tgtgagttct ggttgtccga agtcaaattc ttggggcacg tgatatctgc      3540
     taaaggagtt gctgtggacc ccgaaacagt gaccgccgtc accgaatgga agcaacccaa      3600
     gacagttact cagattcgca gtttcttggg tttggcagga tactatcgga gattcatcga      3660
     gaacttctcc aaaatcgctc gacccatgac acagttgttg aagaaagaag agaagtttgt      3720
     gtggagcccg caatgcgaga aggcgttcca aactctcaaa gaaaagctgg tttcctcgcc      3780
     cgtgttaatc ttgccggata ctcgcaagga tttcatggtg tactgtgatg cttcgcgcca      3840
     aggattgggg tgcgtgctca tgcaggacgg tcatgtggta gcctatgcct cacgccagct      3900
     acgtcctcat gaaggcaact accctacaca tgacttggag ttagcagcgg tggttcatgc      3960
     tctaaaaatc tggcggcact atctcattgg gaaccgctgt gaaatatata ctgatcataa      4020
     gagtttgaaa tacatcttca cccagtcgga tctgaatctt cggcaaagga gatggttaga      4080
     actcatcaag gattatgatg tgggaattca ctatcaccct ggtaaggcca atgtggttgc      4140
     cgacgctcta agtcgaaaga gccactgcaa cactctcaat gtccgaggca ttccacccga      4200
     gcttaatcaa cagatggaag ccctgaacct aagcatagtt ggtcgcggat ttttggccgc      4260
     gttggaagcc aagcccacct tgctcgatca aatccgcgag gctcagaaga atgatccgga      4320
     catgcatgga ctcctcaaga atatgaaaca gggtaaagcc gctggtttca cagaggatga      4380
     acacggaacc ttatggaacg gaaagcgggt atgcgttcca gaaagcagag agcttaaaca      4440
     gctgatactt caggaagctc atgaaagtcc ttattccatt cacccgggta gtacaaagat      4500
     gtacttagac ttgaaggaga aatactggtg ggttagcatg aagcgggaaa ttgcagagtt      4560
     tgtggctcta tgtgatgtgt gccagcgtgt caaggcagag caccagcgac cggctggact      4620
     tctccagcct ctccaagtgc cggaatggaa atgggatgaa attgggatgg atttcatcac      4680
     cggccttcca aaaacccaag gtggatatga ttctatatgg gtagtcgtgg atcgattaac      4740
     caaggtagct cgattcattc ctgtgaagac cacttatgga gggaacaaac tagcggagct      4800
     ctacttcgct aggatcgtga gtctccatgg tattcccaag aaaatcgtat ctgatagggg      4860
     aagccaattc acctctcact tttggaagaa gctccaagaa gagctgggta ctcgattgaa      4920
     ttttagcacc gcctatcacc cgcagacaga tggacagacc gagcgtctaa atcagatcct      4980
     agaagatctg ctccgcgcat gtgtactaga tttcgggaag acttgggata agagtctccc      5040
     ctatgccgag ttctcctaca ataacagcta tcaagccagc atacaaatgg caccttatga      5100
     agcgttgtac gggcgcaaat gccgaacacc gctattgtgg gaccaagttg gagaaagcca      5160
     agtgttcggg actgatatcc tgagagaagc tgaagctaaa gtcagaatca ttcgggataa      5220
     tctaaaggtg gcacagtctc ggcagaaaag ttatgcagat aaccgtcgcc gtgatctgga      5280
     attcgcagtg gatgattttg tgtaccttcg ggtcacgcca ttgcgaggtg tgcacaggtt      5340
     tcagacaaaa gggaagctcg cacctcggta tgtgggtccc ttccgtatca tcgctcgacg      5400
     tggagaagtt gcttaccagc tggagctgcc cgcctccttg ggtaacgtgc atgatgtgtt      5460
     ccatgtgtcg caactcaaga aatgtcttcg agtgccatcc gagcaggccg actcagagca      5520
     aattgaagtt cgcgaagact tgacctacgt ggagaggcca gtgaaaatcc tggacaccat      5580
     ggagcgcagg accaggaacc gggtaatccg tttttgcaag gtccagtgga gcaaccacgc      5640
     cgaagaagaa gctacttggg agcgcgaaga cgagctgaag gcagcccatc ccgatctctt      5700
     cgccagttct tccgaatctc ggggtcgaga ttccgtttaa ggggggtagg tt              5752
//
ID   CLOUD-4     repbase; DNA   ; ORY   ; 520 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice Mutator-like non-autonomous DNA transposon CLOUD-4.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; CLOUD-4;
KW   Mutator-like; target site duplication.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-520
RA   Jiang N., Wessler R.S.;
RT   "CLOUD-4: a Mutator-like non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Repbase Reports 2(7), 11-11 (2002).
XX
CC   [1] (Consensus)
XX
CC   9bp target site duplications.
XX
SQ   Sequence 520 BP; 170 A; 105 C; 104 G; 141 T; 0 other;
     gagtaaagta tacgggcggt ccttaaactt gtaggggtgt gtcatctagg tccctaaact        60
     ctcaaaatgc atatccaagt cctagaactt gtcatagtgt gtcatatagg tcccaaatcg       120
     ccacaacccc ttcagcattc tatgtggcgt tgatgtggca taccacatgg acatgccgtg       180
     gcatcatttt gactgacaaa taggacccat ttaaattttt tttctttttc tttttccctt       240
     tcgtctcctt tctctgtgac ccgagcaaaa gaaaggaaaa aaaaagaaga atgagaagaa       300
     aacgaaaaag aaaaataaaa gaagaaaaaa aataaaaagg acacgtcacg tccatgtggt       360
     atgccacatc agcaccacgt aggattctag aggggatgta tcgatttggg acctaaatga       420
     tacactttga caagttttag gacctgatat gtattttgag agtttaggga cctatatgac       480
     acaaccctac aagtctaagg accgctaatg cactttactc                             520
//
ID   TOURIST-IX  repbase; DNA   ; ORY   ; 326 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice non-autonomous DNA transposon TOURIST-IX.
XX
KW   DNA transposon; non-autonomous; target site duplication;
KW   TOURIST-IX.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-326
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences.";
RL   Plant J 25(2), 169-179 (2001).
XX
CC   [1] (Consensus)
XX
CC   MITE, 3bp target site duplications.TOURIST superfamily.
XX
SQ   Sequence 326 BP; 120 A; 43 C; 51 G; 112 T; 0 other;
     gggttggttt gatttgtggc ctaaataaac cttactaaat tttagtaaaa tttagaaata        60
     acaaaatttg atcaggcaaa gttgtgtttg gattgaagcc aaaatagcct aagtttacta       120
     ttgaaatgac ctattttctt aagcatatca aaaattttgg ttaaagttgt gtttggattg       180
     aagttaaaat agcctaagtt cactattgaa atgacatatt ttcttaggca tgttaaaaat       240
     tttggttcaa accaaataga cactaaacac tattgaagtt gaaaaatatt gataaaccta       300
     atttatgcct caaactacac tagccc                                            326
//
ID   RETROSAT3_I repbase; DNA   ; ORY   ; 5393 BP.
XX
AC   AF172282;
XX
DT   28-MAY-2005 (Rel. 10.05, Created)
DT   28-MAY-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Oryza sativa gypsy-type retrotransposon RETROSAT3_I, internal
DE   region.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; RETROSAT2;
KW   RETROSAT3_I.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5393
RA   Tarchini R., Biddle P., Wineland R., Tingey S., Rafalski A.;
RT   "The complete sequence of 340 kb of DNA around the rice Adh1-adh2
RT   region reveals interrupted colinearity with maize chromosome 4.";
RL   Plant Cell 12(3), 381-391 (2000).
XX
DR   Genbank; AF172282; Positions  250833  245441.
XX
CC   RETROSAT3_I is 77% identical to RETROSAT2_I. The corresponding
CC   LTRs are 85% identical.
XX
FH   Key           Location/Qualifiers
FT   CDS           754..5376
FT                 /product="RETROSAT3_I_1p"
FT                 /translation="APCFSSFSHISTYPLQMETRNGSRDSNNASGSEEPIN
FT                 GARANGASDNSPSPPPENPTIAQVLDNQTQMMTMMMQQMQQQYHQVLQQVQ
FT                 QQAQLQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKK
FT                 LNLLQCNEQEKVAFATHQLQGPASIWWDNYMVTRPAGAEVTWTEFRHSFNK
FT                 AQVPEGIVGQKKREFRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAEKQE
FT                 KFMSGLDDELTNQLISRDYEDFEKLVDKAIRQEEQCNKMNRKRKAAQFRTP
FT                 QGKCQKPRYTMGRHGGPSTMIIRQHRPYHPGSFNKTHHSDSHNNSGSHSSL
FT                 NPTPSPLMIPAQSDQPALPEQPKRLVEKPELCFNCNKPGHTVGKCPKPRRA
FT                 GPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILFDSGATHSFISKR
FT                 FAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGSIFPANLILLE
FT                 SKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEVVIFQSPVPQKPGISL
FT                 NQAAGEEQEVAVEKTTKKLEDIPIVREYLEVFPDDLTTMPPKRDIEFRIDL
FT                 VPGTAPIHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEK
FT                 KDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYH
FT                 QLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEFLDK
FT                 FVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF
FT                 LGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSK
FT                 IAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYC
FT                 DASRQGLGCVLMQDGKVVSYASRQMRPHEGNYPTHDLELAAVVHALKIWRH
FT                 YLISNRCEVYTDHKSLKYIFTQADLNLRQRRWLELIKDYDMGIHYHPGKAN
FT                 VVADALSRKSYCNVAWVEQLCCEVQRDLEHLNLGIVEHGFVAALEAQPTLV
FT                 EQVRIAQASDPEIAELKKNMRVGKARGFVEDEQGTIWMGERLCVPENKELK
FT                 DLILTEAHQTQYSIHPGSTKMYQDLKENFWWVSMRREIAEFVALCDVCQRV
FT                 KAEHQRPAGLLQPLQIPEWKWEEIGMDFVTGLPRTSSGHDSIWVVVDRLTK
FT                 VAHFIPVHTTYSGKKLAELYLARIMCLHGVPKKIVSDRGSQFTSKFWQKLQ
FT                 EELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGAWDKSLPYAE
FT                 FSYNNSYQASLQMAPFEALYGRRCRTPLFWDQTGERQLFGTEVLNEAEEKV
FT                 RAVRERLRIAQSRQKSYADNRRRELVFQVGDYVYLRVTPLRGVHRFQTKGK
FT                 LAPRFVGPYRILERRGEVAYQLELPSNMLGIHNVFHVSQLKKCLRVPEEQA
FT                 SPDQIEIQEDLTYVEKPTRILETSERKTRNKVIRFCKVQWSHHSEEEATWE
FT                 REDELKATHPHLFASSSESRGRDSV"
XX
SQ   Sequence 5393 BP; 1482 A; 1200 C; 1353 G; 1358 T; 0 other;
     agttggtatc agaaccgacc ttgaccgtag gacaagccaa ctggaaacct aagagccctc        60
     tgaacccctt tttcatctgc atatgccttt ttgcacctgg aattgtttcg ggaaaatttg       120
     gagttttgcc tctttggttt gcgggaaaaa tcttggtcgt tctttcggat cggatttttt       180
     tttaaaaaaa aaaatattag ctcagtctag ggctttagaa aaattttagt tggagtttat       240
     tcgacagtca gtcgggaatt tattgggggt tatgcattag gtcgtgtcta tattcgatgg       300
     gggcaatgtt atgcgcatcg ttttccatgc aactagtcta tgcattaatt tattgtttag       360
     ttgcattagt gtctttattt gagttcatga aaaatgttct atgcataaaa atcatcatgc       420
     tcggttattt atttgagttt tcttttgctt tgtttaattt gggtttgagc atggattggt       480
     tcctatccct tgtctacttt agatgtcagt cctatccctc gtttgcaagc gccgcctcga       540
     gcttcagagt cgccgccctt agctttatcg tcttcttagt ctggttgctt gctagttttc       600
     gtgtttaggt ttgttgcttg tgggctagtc ggcggccgat atcatgtgtc agtggtatga       660
     ctgcctcaat taggagttgc gtgcctcttt ttcagtgttt taatcaagat taagataatt       720
     gcacttaaat tcataagcaa gattagtttc tgagccccct gtttttcttc cttttctcat       780
     atttctacct atccccttca gatggagaca aggaatggtt cacgcgactc gaacaacgcc       840
     agtggcagcg aagagccgat caatggagca cgtgccaacg gtgcatctga caacagtccg       900
     tccccaccgc ccgagaaccc aacaattgct caggtgttgg acaatcagac tcagatgatg       960
     acaatgatga tgcaacagat gcagcaacag taccatcagg tgttgcagca ggtgcagcag      1020
     caagcacagc tgcagcagca gaacctgcag tttggtcctc cacctcctca gtccaaactg      1080
     ttagaatttc ttcgtgtcaa gccgcccacc ttctcaagca ccaccaaccc aatcgaggcc      1140
     cacgactggc ttcatgccat tgagaagaag ctgaatcttt tgcaatgcaa cgagcaggag      1200
     aaggttgctt ttgctacaca ccagctacaa ggtcccgctt ctatttggtg ggacaactac      1260
     atggtgaccc gtccagctgg ggcagaggtt acttggacag agtttcgtca tagtttcaat      1320
     aaagcacagg ttcccgaggg aattgtggga caaaagaaga gagagttccg ttccctgcaa      1380
     caaggaacca gaacagttat agagtatttg catgagttca accgcctcgc gcgctacgcc      1440
     cctgaggacg tgcgtaccga tgccgagaag caggagaagt ttatgtctgg tcttgatgac      1500
     gaattgacca accagttgat ctctagagac tatgaggact ttgagaagct tgtggacaag      1560
     gctattcgtc aagaggagca gtgtaacaaa atgaaccgta agaggaaggc agcccagttc      1620
     aggactcccc aggggaagtg tcagaagcct cgttacacga tgggacgtca cggtggacct      1680
     tccaccatga ttatccgaca gcaccgtccc taccacccgg gtagcttcaa taagacccac      1740
     catagtgata gtcacaacaa cagtggcagt cacagcagcc tcaacccgac tccaagtcca      1800
     ttaatgattc cagctcagtc agatcagcca gctctgccag aacagcccaa gaggttggta      1860
     gaaaaacccg aactctgctt caattgtaac aaacccggac acacggttgg aaagtgcccg      1920
     aagccaagac gtgccggacc caagttcgtt caggcccgtg ttaatcatgc atctgcagag      1980
     gaggcgcagt cagcaccaga ggttatattg ggcacattcc ccgtcaactc gacaccggca      2040
     gtaatattgt ttgattctgg tgcaacccat tcctttattt ccaagcgttt tgctggtgca      2100
     catgggttat ctttagtgaa gcttaagata cctatgcgag tgcatactcc tggaggtggc      2160
     atgaccacaa ctcactactg cccatctgtg acagttgaaa ttcaagggtc gatttttcca      2220
     gccaacctca ttcttctcga atccaaggac ctagacgtca tacttggaat ggattggttg      2280
     acaaggcaca gaggagtgat tgattgcgcc agccgcacca tcaagttgac caatgcaaaa      2340
     ggagaggtgg taatcttcca gtccccagtg ccgcagaagc cagggattag tttaaaccag      2400
     gctgctggtg aagaacaaga ggtagcagtg gagaaaacca ctaagaagct ggaggatatt      2460
     cccatagtca gagagtatct agaggttttt ccggatgatc tgacaacaat gccaccaaaa      2520
     agggatatcg agttccggat tgacttggta cctggaactg caccgatcca caagaggcct      2580
     tacagaatgg gagccaacga gttggcggag gtcaagaagc aagtcgatga acagttacag      2640
     aagggataca tccgcccgag cacgtcgcct tggggtgctc cggttatctt tgtggaaaag      2700
     aaagacaaaa ccaagaggat gtgcgttgac taccgcgcac tcaatgaggt caccatcaag      2760
     aacaagtatc ctttgccaag gattgatgat ctgtttgatc agttgaaagg agctacggtg      2820
     ttctctaaga tagacctgcg atcaggttat caccagttga ggatccgcga agaggatatt      2880
     ccaaagacag cattcatcac tcggtacggg ttgttcgaat gcacagttat gtctttcgga      2940
     ctcactaatg cacctgcctt cttcatgaat ttgatgaaca aggtgtttat ggaatttcta      3000
     gacaagtttg tcgtggtttt tatcgatgac atacttatct actccaagtc cgaggaagaa      3060
     catgagcagc atcttcggct ggtacttgaa aagttaaaag agcaccagct atatgccaag      3120
     ttcagcaagt gcgacttctg gcttaaggaa gttcagtttc tcggtcacat cgtgaatgct      3180
     caaggagtag ctgtggatcc agccaatgtg gagtcagtta ccaagtggac cccaccaagg      3240
     acagtcactc aggttcggag tttcttagga cttgcgggct attaccgccg gttcattgag      3300
     aacttctcta aaattgctaa gccaatgaca cagctattga agaaggaaga aaagtttatc      3360
     tggtctgctg aatgcaatag gagttttgaa gaactcaaac gacggttggt gtctgcacca      3420
     gtcttaatcc tgcctgatca gacgaaagat ttccaggtct attgtgatgc atctcgccag      3480
     gggctaggat gtgtgttgat gcaggatggc aaagtggttt cttatgcttc acggcagatg      3540
     cgtcctcatg aaggcaacta cccgacgcat gatctggaat tagccgcagt tgttcatgct      3600
     ttaaagattt ggcggcacta tctcatcagt aaccgttgtg aggtatatac agatcacaaa      3660
     agtctaaagt acatcttcac tcaagctgat ttgaatctca gacagcgaag atggttggag      3720
     ctgatcaagg attatgatat gggaatacat tatcatcccg gcaaggctaa tgtggttgca      3780
     gatgccttga gcaggaagag ctactgcaat gttgcatggg tagagcaact atgttgcgag      3840
     gttcaacgcg atctggaaca tctgaacctt ggtatagttg agcacggatt cgtggctgcc      3900
     ctagaggcac agcccacact ggtggagcag gttcgcatag ctcaagcaag tgatcctgaa      3960
     atagcagagc tcaaaaagaa catgagggtc ggaaaagccc gaggttttgt tgaggacgaa      4020
     caaggaacaa tctggatggg agaaagattg tgtgtacccg aaaacaagga attaaaagac      4080
     ctgatactaa ccgaggctca tcaaactcag tattccattc atcccggtag tactaagatg      4140
     taccaagacc tcaaagagaa tttctggtgg gtcagcatga gaagggaaat agctgaattc      4200
     gtagcactct gtgacgtctg tcaacgagta aaggcagaac accaaaggcc agcaggtttg      4260
     ctacagccac ttcagattcc agaatggaag tgggaagaaa tcggaatgga tttcgtcacc      4320
     ggtttgccca ggacgtcatc ggggcatgat tctatttggg tagtcgttga ccgactcacc      4380
     aaagtggctc acttcattcc ggtgcacact acctactcag ggaagaaatt agcagaactc      4440
     tatctggcaa gaattatgtg tttacatgga gtacctaaga agatcgtgtc tgatcgagga      4500
     agccaattca cttcaaagtt ctggcagaaa ttacaagaag aattgggaac ccggttgaat      4560
     ttcagcaccg cttaccatcc acaaacagat ggccagaccg agcgagtcaa tcaaatacta      4620
     gaggatatgt tgagagcctg tgcgcttgac tttggtgggg catgggacaa aagcttgccg      4680
     tatgctgagt tctcgtacaa caacagttac caagctagtc tgcagatggc accatttgaa      4740
     gcactgtatg gacggaggtg tcgtactccg ctcttctggg atcagacagg ggaacgccag      4800
     ttgtttggta cagaagtttt aaatgaggca gaagagaaag tcagagctgt tagggaaaga      4860
     ttgagaatcg cgcagtctcg gcagaaaagc tatgcagaca accgccgaag ggagctcgtt      4920
     ttccaagtag gggattatgt gtatctccgt gtcactccgc tcaggggagt acatcgcttt      4980
     caaaccaaag gaaagttggc accacgcttt gtgggaccat atcggatttt ggaacgtaga      5040
     ggtgaagttg cttaccagct cgagcttccc tccaacatgc ttggcatcca taatgtgttc      5100
     cacgtctccc agttgaagaa atgtttgaga gttcctgagg aacaggcaag tccggatcaa      5160
     atcgaaatcc aggaagactt gacgtatgtg gagaagccaa ctcgtatcct cgaaaccagc      5220
     gagagaaaga ccagaaacaa agtaataaga ttctgcaagg ttcagtggag ccaccactca      5280
     gaggaagagg ccacttggga aagagaagat gagttgaagg ccacccaccc gcacctcttc      5340
     gccagctctt ccgaatctcg gggtcgagat tccgtttaag gggggtagga atg             5393
//
ID   LINE-3      repbase; DNA   ; ORY   ; 10975 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice long interspersed nuclear element LINE-3.
XX
KW   LINE; long interspersed nuclear element; LINE-3.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10975
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences.";
RL   Plant J 25(2), 169-179 (2001).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 10975 BP; 3216 A; 2526 C; 2688 G; 2545 T; 0 other;
     ccacgctaca ctcctaagag atccccaaaa aaagcaacgt cggctaaaga ccacagctgg        60
     ccctccgagc gggtggactc cataaccact gcgaccgaag cgagcgcaga gtcgaaaacc       120
     ctggagtttc gttccttcca cagctgccag gagactagga gtaccaagga gtcgaagccg       180
     ctgcagtggt gctcaggtaa acaggccctg gaggatgacc accaatcctg gagccagctg       240
     ccacgaaggg gagagagggc agcccagcca ggaggggaca tcacacggag ccagacctgc       300
     cgagcgaaca cgcaatcgat gaggatgtgg ttcgccgtct caagcttctg agcgcaaaag       360
     gggcaagcag agtggctatc gataccacgc ttttggagaa gatcggcagt ccagcagcgc       420
     tgctgaaatg caaaccaaag gaagaacttg catttagcag ggcccttcgc gtgccagagt       480
     aggtcggcac aggcaaaaga gtgctggcca aggaagaacg cccgatacgt cgattgcgtt       540
     gagtagcact ggtcacccgt ccaacgccag gcgaggtgat cctcaacacc cgatgagagc       600
     tgggtaggaa gcaccgcatc ccagactaac aggaactgag agatgaccgg gacagtgagg       660
     gcgccacata tgtcaccaac ccaggagttg ttcgctaacc caacggcaac cgtgcgcgat       720
     ccccgaaagc gtggaggcac ggcgtggagg aggtcaggag ctatagaagc tatcgagcga       780
     ccatcgatcc atcggtcagt ccagaagagc gtggactgac catctcccag gatagagaag       840
     gtggatgctg caaacatgtc ggagacgctc cactcaacag gggccttcag aacaaaccag       900
     tagtgatgtc ccgagtgctg aagccagagc caacgaactc tcaaggcaaa gccagccatc       960
     atgagatcca taatgcccag tccactgaga tccctaggac gacaaaccct cgtccaggac      1020
     acccggcact atcccccatt ggccgagtcc gtacccgtcc acaagaaggc gcaacgcttc      1080
     ttgtcaatgg ctttgataac ccagcttggc aagccgatcg ccatagaaac atggactgga      1140
     atggaagaga gaaccgactg gactagaacc gagcgacccg ccagagtggt gagacggccc      1200
     ttccaggagg gagccgatgg gagactttat ccacaagcgg ttgcagggcc gcttttggca      1260
     gcttgcgaac tgacagtgga atgccgaggt aggtgcaggg aaactccgag attgagcaag      1320
     gaaaagagga ctgaaccagt ttcaggtcaa gaaccgagca gcggatcgga gtaatcgagc      1380
     acttggtgaa gttggtccga agcccagaag cggcaccgaa gacagagagg atgccttgga      1440
     tgaactcaag gtcttgccga acgggggaaa ggaagagaac tagatcatcg gcgtagaggg      1500
     atgcacgatg tcgaatagca cgatcattga ggggaagaaa accacccgag tcaaaggctt      1560
     tgcggagcat cgcattgagc acatccatga ctagaatgaa aagcatgggg gaaagaggat      1620
     ctccttggcg aagacctctc cgatggggga accgtggacc tggcacccca ttaaccagca      1680
     cccgggaaga ggaggcactg agaatgaggg agatccaatc acgccaacgt tgactgaagc      1740
     caagttgggc tagcacctca agcaagaaag gccagctgac cgtgtcaaag gccttcgcga      1800
     tatccacctt gagaagaagt cagggaacgc gtttggcgtg gagcgccctt gccgcaagct      1860
     tgacatagcg gaagttgtca tgaagagagc ggcccttgat gaaagcgctc tggttagacg      1920
     ccacaagctc gtccaggcga ggggagagac gagaggccaa gatcttggag aacagcttcc      1980
     caaagctgtg gataaggcta atcagcctaa aatccttaat gtcaacagcc tcgtccttct      2040
     tcggcaagag ggagatcagg gcgttcttaa attactgtat gactataggt gtaatgtctt      2100
     caaataaatt ctcattgtaa ttcaataagt taatgaatct gcaaatagtt cacgtaaatg      2160
     gaacataatg cttgatctca aatgacaaag aaacatatat agtatgggca tcttatccct      2220
     gatcaacatc acaaagaagg attcatcatt ttacagtgtt aaatgaaaac atgcagcatc      2280
     aaatctattg cagccggatt atgagccacc cctgcaacat gaaaattcac atttatattt      2340
     gcatggatct atgactcgta cagatttgaa aggcatgaac aatctaacct gtgaagtaat      2400
     tccagtagta aaatggaatg cattgtcaat aaattgtagt aaaaaaacaa aaaaactgta      2460
     ccaactgaaa acctttcaaa agaggaagga gtcaaaccat atcaagcaac gaggtttcaa      2520
     aatgaaatca ttttgtgtaa taagtatata tactactgaa atagtgagag cagagcacta      2580
     tatgagttgg catcaatacc ccagatatta tgcagtgaat caggcatcaa gaatagccaa      2640
     agttaatcag aaagttgaaa aatagtatat acaccttatg aatttgtctg caatttagat      2700
     attcttttac aagattgctc catcactctt ttatggtcaa tattctcaac atgattgaag      2760
     aacaatgttc aatattgtta tacttatcct acctattgtg tgataatcca caatcatttc      2820
     tgacacaatg tgatatatgt ctaaagaagt ggtccttcta agatcatatg ccaccaaacc      2880
     actattgaat tcatcactga gaatagatat tttgtggcac agctcaggtt attagaaggg      2940
     agctatttac ctgaaatgct tttggacatc taccatttga cgctgcaaag caaccaaggt      3000
     aacatgataa ttcctgccaa aaaaaaaatt gactgaataa gcaactgaat atcagagaca      3060
     ggatgcagga aacaaagaaa tttcaacaac tgttatgtca tccttgttga attgttgaga      3120
     tgaacctcaa caatctgacc cctgcgatag attcaaaagc atatggagtg caattttttc      3180
     tttgtatttt attccatgat agtgaataag tcggcagcga tggaacgatg ggcggaggtc      3240
     aatggcgagg aagcgggatc aggcggtgat gtagtcttcg agatgataat atcgctgaga      3300
     tggatgtata cggcaagatc agcttaccaa gctcagatca gttcataatt ctctcactgt      3360
     cccactttga tctggaaagt tccaagtgct gaatttatgt gtggcttggc tactgatttc      3420
     aaaacaggat atggacagct gatcgcctgc aactacgggg ctggtaaaac aacaacatga      3480
     gatggcattc tgggaggctg tggaagcacg aatgaagtat tcacaactca aagcgtgccc      3540
     cgggaatcct tgttggataa ttaaccacgg accaagaaaa cgaacaaggg cagagtcaaa      3600
     tctctttcaa tcccggtttc ttgggagttt ttttatcgct gagatggata gctattgaaa      3660
     gagaacaagc gcagaagaga ctggatggat agctggagga gcgaggggtc tgtcaacgat      3720
     ttatgtattg cactccagag agagtaacaa catcccaaaa cgcttctcat agaatagaag      3780
     caatcagtta tctgttgtac aatgaactaa tgaattgaat tagttcgcct gtaagctgag      3840
     aagctaactg gcaagagggg acagaggccg gacgaccggc agaaagaacc taaggaacgc      3900
     ttcaaataga acccatcttg gaggacctct agcattgtga ctgtcgagaa cttcaatgtg      3960
     caattcccgg ccaaaagggg ttgccgaaaa ccggtatgca tagcatacaa cggcatgcag      4020
     agaggccgtt tggttgtcaa ccaagaacgc tgggcagcct ctgtacaccc tcctggcatc      4080
     cttgtcagca tcgcaaccgg agtatccctt tggggtagcc cagaggaccc caatgacagg      4140
     gccattcgaa catggagaaa agcatttgaa ttgtagtcct gtagggtcca acaaatctac      4200
     ggtatctctc tatctgtagt agagccatac cgtcagtcgt tggtagccct ccgatgtcaa      4260
     tgattacatc cagcaccctg tcagatttcc caccactttc ctgtgaccag gcattcctct      4320
     taaggcattc ttttctgagt tttgcagggg gtgattctac cctccatgca aaggatcctc      4380
     tcccatggat tctctcaaac gcaagccggt cgatacatac actgcacgcc gagagcgagc      4440
     agcctcctgc accatgcata caatacatac acagagagat cagtcagtga gagggtggag      4500
     aaattagtca atcaatgaga gagcaggtat tactattcca gttaggagct tcacctgcgt      4560
     attgaataat tggtgagccc attacttctt cccaactgta ttcattcggt actaatgctt      4620
     ggtgaatccc tgccactact ttccacttaa aatttcttaa gctgcaaacc cagtcagata      4680
     gaaactttgt gcagtacaca ggttttgcat cagccttctg cactgaggcc tcctccaaga      4740
     gtgatatgtt cattccctca tattcctctt cattcctatc cttgtaatct gcaagcattg      4800
     tgcaatttgt tcgtcatgtg actagaagca gaagcatgaa caaacataac aatgtactac      4860
     tactactaca aattaacctg gtagatctgc aagacccatg cagctaacag cctcaattac      4920
     tacttctagt tttggacttg agcttgttgg agctagcgag gacaaaaact acctgaacga      4980
     attgctacac tactagcttc atgctaaact caatctctca ggcagacatg gagcaatgag      5040
     cgaatacatt ttttaaggta ctagctgcta ttccctccat tctaaaatat aaacacatgt      5100
     agcatttgag atctgtacca aattacaagt acttctaaag cactcaattt agaagtgctc      5160
     ttcagtgaaa tgtttgttta ctgaaatata aacacatgca acaaccttat ttcagtgaac      5220
     atacaagaaa aacaaaacgc tggacaatgg ggaaggaccc aatgtggaat ttatcaagaa      5280
     agagggtgag cgtgtccggc cagagtcgaa cgcgggtcgc ggggagcaca acggctgcac      5340
     catgccatct gcgctacacg cagtctccag tgaacatata agcattcact cagtttcagt      5400
     taacatatgg agctaatttc agaaatatga ggagcaggct atgggctgtt ttcaatgatg      5460
     ataccagtta ataagagaga gccagtgttt agactgaaaa catctatcag aacaatcatg      5520
     ataataaata ttggttatat cgttacctga tacaatgtga tgtatatgga gcccactgct      5580
     tctgagaagc agacgaaggg agatgaacgt ctgcaacgga aaacacacaa gggaagcaca      5640
     tgatcaacaa ttgaatcagg aatttcacat caagatgtag ctacccccag gcatgatgaa      5700
     agaatttgtt ttttaggcgg aaaaggggaa taaccagaag aaacacggcg caagagaggg      5760
     ggtgcaagaa accccatgag aatgacatgg cggtggcaat gttgagcgaa tcaagaacaa      5820
     gaaacagact taattacccg aggacgccgc ttgcacacgg atgtcctgtt cttgacgccg      5880
     ggttcgcggc caggcgacac tgacacctgc tcgcggatgg ccagcgtctt cttgttgttg      5940
     tgcacatgta gaaggccggc gtcaccgccg tagatggggt tcggaatcac aaccctgcac      6000
     cggcggaagt cgcggcacaa ggagaagagg ctggtgacgt cgtggcccag tgagaggggt      6060
     tcttaatcgc cgatgggcga atccgatagc gtcgtcgtgt gccagcgcag tacgccggtg      6120
     acgccctcgc cgccgtggaa gggggtcggc atcgcgcccc cgcgctggct gacgtcgtgg      6180
     cccaggggcg cctgctcgag ctccagcagc atcttcttgg ggcggtgaag aatgcaggtg      6240
     acgccctcgc cgccatggaa ggaggccgaa tcctcctcga attccatttc cccgctgcga      6300
     acttcacggc cggtggttct tgctctcttg gttcaatagc tggaagagag agagaattgg      6360
     aggccgttgg gttagagcgg gtactagtat ttgaagcccg cacctgtacc gacttgaggc      6420
     ccctcggctc ctgagatcat gccacgtgtc taagtattcc ttcatcccct tctccccact      6480
     gccatggcgg cttctttttc ttgccttcaa acaaacaaca gagtgaacaa accacactgt      6540
     attagtcctc accagaaaag ctctaaacag ataatagtac tgagttatgg taatcctcgg      6600
     gggcaaggag ctatccatgt caagattagc aggcttttct ttatgtgtta tcatgtcaca      6660
     agagaatttt gccaagaatg aatattgcaa gttgatcatg cattccgtta ctcttcccag      6720
     gtgcaaaaca ctatatacac gcaaaataaa taaatcatgt ttattgcttc tgcaaatttc      6780
     ctttttctag ccaaatacac aactactgca gcagatatct cagaatacag catcagggct      6840
     ggttcaatat cccaatttgc agcaactggg taaaagggct tttgtcacca gtctcaagtc      6900
     agtgcacctc cagagtccag agtgacaaag aggtgtttga tctgagcagg ttcttcatgg      6960
     agaactttgc tccgcatata ctgcttcact tggtcttcct gctacctcaa agattcattt      7020
     tgttagccac acaaagaatg tgccaaacaa gtatattggg gacatcgatg tgaaaacaag      7080
     ttccaaacct caagctatag aaattaatcc acaggtcaac agtaacttaa ttgtggatga      7140
     tggagatgga aatatccttt attccaagga gtcttgggtg atggtcttga tgatgtcctt      7200
     tatcctcagg gagtcaactg cagacacaaa tattgaacca gagaaagtca cacagtacat      7260
     cccgggaatt acttccacct tccaactttc agcccaccat tctttttgta gatattgctt      7320
     tgtgctgttc tattctaaac ctattgtcat tgtcagattg agaaataagc ccataaaaat      7380
     cactttcagc ttgaatggta aagatgttga ttaacaaaaa caagtctcac attcaagtga      7440
     ttctcaagag taccaggtat ctgtggtgat actaaaaaat gacttaatga gtcgtttaag      7500
     gacaatggat gataactcat ggcatcgtcc acatgacaag acttctgcaa caactcaaga      7560
     aaacaccact cgagttcatg cgagtgtact ccctggtaat ccggttgcac tctgaaagtt      7620
     gtactgtcac catggtcact gcataatgag gttttgtaat ggctgcaaga actcagttga      7680
     caattgcagc tcacaaagca gatgtacatc aatgcttctt cgctcatttg aagtttaaaa      7740
     agtgaactat ggtgtatgtt atgatgagaa aaatgtcgat gattgactgg gctttcaatg      7800
     tcatacctgc tgtgggagtc ctgctgatgt tgtgtctgct cctgctgctg ctcatgattg      7860
     ccattatcac atattcaaag tagttttgcg tgctaggatg ctgtgcattt ggtgcaccat      7920
     agtatgcatc acagcccgta tccttagtag ttgccattcc actggctggg atcctgctgg      7980
     ggaggcctga aattcagtca gctggcatta caggttttgg ggttaaccta tgcacatgca      8040
     tgctgcagct cgcataaaca accaaggatt aaactctgta cagaaacctg tttgttctga      8100
     tgaggagagc agccccatga aagccgaact tggtacccac ctatcggaga tacactccaa      8160
     acacggatgg atggtttctt tagcggatga cctgaaagta gaataatata accaaagcaa      8220
     caaagaatca tatgtactga tagtattagg tgaagatgat tacaaagaaa gcttgaagaa      8280
     ttcattaatc tgctgctagt aaattgggca aatccacgga gctttgccta gagaaatctt      8340
     cacatgacca atttcagcac atgattgaga tggttctcat ttacattgga atctatgggg      8400
     gcagcacaat acgaaaaatc agttgcgtca aaaaaaaaaa ggaaaaaaaa tcaggaaaca      8460
     gcaagtcgta gaattaaata atgagaaagt taatgattct cgaaattgtt tccttgggag      8520
     ctccagctct ggtaagctgc aattagaaaa catatataat aagcaccata agttgagaaa      8580
     gatcaccata ggatgctgat gctatatagt aaaaaagtat ggaaaacccg aaatcaaagt      8640
     tagcaaccat gtttgctagc cagacgccca gacccaaaac aaacaggcca ctgaagacaa      8700
     cagattcagt gttaccatgt tgataagtaa actaaatttc ttccttaata atctatggga      8760
     tgatgaaagg aatacaagca atccttactt gatgaaggtg atttgacaaa ctagtgaatg      8820
     tattgtatca gcttggctga aaaaacaaga aaagactgaa tgcatttagt aattagccaa      8880
     tattgtgacc gaatctgaat tgtcgtgcct ggttgcgggc ttgtgatgtg ctttgaagag      8940
     gtggcggggg ccgggaggag gaggacgcgg ccagcgcgcc ccgtcctccg ccgccgagcg      9000
     ccgactcctc cccacttcca caaccacatg gcgccgccgg agttggaggc gccgaggcag      9060
     ccggagcagg agtggtcgcg gtcggagccg acggcaagag gggcgcacga agtacgcccg      9120
     cggcggaaca accaggactg agaaggcgat gcaggcggcg gcggcggcgg cggcggcgag      9180
     gaataggaag ctaggagcat aattttcaac ttctgagccg ttggatctga caagtgacga      9240
     ggcctccctc accctaccac tcttctgcgc aagtcttttt ctttttcttt taacagaaaa      9300
     aaaaaaccca acttggaagg gaccgatcgc acaaacagaa gggtgtatgt ccgcgtgtaa      9360
     aaaaaaaaaa gtataggcgg ggatgattca cacatgttgg gggagtggct ccggttgacg      9420
     gagctggcct ccgtcagtgg ggaaactcta ctcggagcca tccaccaagg gagaatgacc      9480
     gaaggtttcg gaaccaaccg agagctccgg agcacatcac cagctccgga gcagactagc      9540
     cgccctgaag cctgtcatag gctccggagc atatcaacga cgctggagct aaccaatagc      9600
     tccgaagcag atcaagggct ccggaatatc cggggaccca aagtatccaa gcatgaagga      9660
     atggcgcacg agcgtagtgg ggcgccataa atacgcatta cgcgtccgcc aaccacctct      9720
     gacattctga caggggcagg gcggcatcca ctatcatccg ggggcatgcc tttacccgga      9780
     taatagccat caccctcgga aagcgtcacc gcatccttaa tgggcgcagc ctttcctgtc      9840
     acttgggatt ttaacgattg cccaagggct agcccatcgg ccggccacac tacatctgtt      9900
     ttagttagag caaagatgta actttctctt gtatccctag tatatgtaag cattgcccac      9960
     agttaagggc aaattgaata cagaatacac attgaataca ttgtttggac tttgtcccaa     10020
     caacacgtct aatatcatta gtggaactag ttgcctctat tggaattaat ctcacatata     10080
     atatgatcat ggcatataac ttatacatgt gtacatgtgt gttagagacc attatatcat     10140
     ggactcatgt aagtgattaa ctgaaccatg taatcgtggt tgatgacatg gttcaaatgt     10200
     tgtaaaccgt tagatcacag ccaatcaacg aatattaggc attccaagca ttctagaaaa     10260
     tctcttgata tacgagaatg catgtgtcag ggactcggtt tgtgccatcc aatgggccag     10320
     ttctcaccga gcagtgtccc aaaccagccc aaaagagaga actataagag caacagcagc     10380
     tggtcctcta aggacgaaca gaccagaagc tctcggggaa ttttaactat ttgctacttt     10440
     taggtttgtc aattatctaa atatccctct taggttcgta tttaataatt tgccattgga     10500
     gagaggtgat ttcttaacta tttgccactt ttgcctacgt ggcgagccat cgtggcatgt     10560
     ccgcgtggaa aacgacgtgg accccacccg tcagcccctc ccatctcctt cttctccacc     10620
     tccggccatc atttctccac ccatcagtcg aaatccgcac catggggagg ttgggtgggc     10680
     attggtgcca gcgcacgagc ttgacgcggt agagggaggc ctgccagtgc ggcgtgagat     10740
     tggcgagtgt ggtggggtcg cagcagtaga cggcgagcga ggtcaccgcc ggcaagcaac     10800
     ccacgagacg ggcggcgatg gaggcgttct gctcggagat cgcctcgggg tggtacaggt     10860
     tcatcctcga cgacgtcgat gtcaacgacg gcgcgccgcc gccgccaggc cggacgaagg     10920
     agaggagcgg gtgcccccac agcgagacaa gtgagaggtc gaggcggtcc agcat          10975
//
ID   TNR2        repbase; DNA   ; ORY   ; 157 BP.
XX
AC   D14535;
XX
DT   10-JUL-2002 (Rel. 1, Created)
DT   10-JUL-2002 (Rel. 1, Last updated, Version 1)
XX
DE   Tnr2 short interspersed element.
XX
KW   transposable element; SINE; short interspersed element; TNR2.
XX
OS   Oryza rufipogon
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-157
RA   Mochizuki K., Ohtsubo H., Hirano H., Sano Y., Ohtsubo E.;
RT   "Classification and relationships of rice strains with AA genome
RT   by identification of transposable elements at nine loci.";
RL   Jpn. J. Genet 68(3), 205-217 (1993).
XX
DR   GenBank; D14535; Positions     223     379.
XX
CC   ~10 bp target site duplication.
XX
SQ   Sequence 157 BP; 44 A; 29 C; 30 G; 54 T; 0 other;
     cgggacattt aattattttg ccaattttaa gatgtgccaa ttaactattt gctactcact        60
     gtctatgaca tgtatgccct catgtgtcta tgacatgtgg gtacagtggc aaatccttta       120
     gaaccactcg taagagtggg aaatagttaa ttattcc                                157
//
ID   HELITRON3_OS repbase; DNA   ; ORY   ; 12693 BP.
XX
AC   AC078840;
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   10-JUL-2002 (Rel. 7.06, Last updated, Version 1)
XX
DE   HELITRON3_OS is a rolling-circle DNA transposon - a consensus
DE   sequence.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; HELITRON class;
KW   HELITRON3_OS; helicase; replication protein A.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-12693
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON3_OS.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
DR   GenBank; AC078840; Positions   34442   21413.
XX
CC   HELITRON3_OS encodes the 1425-aa OSHEL3p and 420-aa OSRPA3Hp
CC   proteins.
CC   OSHEL3p is composed of the rolling-circle initiator and DNA
CC   helicase domains.
CC   OSHEL3p (positions 3077-7452):
CC   MQLLMLTNNAALCPERSYYGGPSHECPYCGAVFWYQERVKRDSAVSQRRIVYNLCCRGGKISLPELKYPP
CC   DMLAKLLKFDGDAQSKRFLRQIRSYNSLFAFTSLGADVEKSINNGTAPYVFKINGVVHHRIGSLLPQRGA
CC   KPKFAQLYIYDTENETANRINIFDRENSNDEPDPSIVTRLGAMLDQHNDLVKSFRYARDRLNEHGNEQIA
CC   LRLLGCNAKDEVQYNLPTSGEIAGIIVGDSSNDAYTYDVVVQSSDNRLRQVSALHPSYMALQYPLFFPYG
CC   ERGFHLGIKYTDFPSIAGTSRRYVTMLEYYRYRFHYRLNKPNPYTCCGRLSDSICVDAYSTVEGSRLKFI
CC   HDHQPELRSECVQGIADAIDHGLESGDSVGKKYVLPSSFTGGRRYMVQNYQDAMAVCRVFGSPDLFVTFT
CC   CNSKWQEIIRYXGGKDLRSCAGRXTSSRHVFSYIILSCXYCSCXYPCFHVVLYTVEFQKRGLPHIHCIMW
CC   RAAADAEFSATAVDSLICAEIPDVFSDPLGYALVDEFMIHGPCGDKNKSCVCMKNGHCSKHFPKGFQEET
CC   TMDEFGFTVYRRRNDGRYVVKNGIKLDNRWVVPYNMKLLKKYQAHINVESCNKSNMIKYLFKYITKGGDR
CC   TKLYFETTGNTPNKTVDGTVLPPNEIDEYINARFLSTCEAFWRAFEFDIHYRVPAVERLPIHLPNMNFVQ
CC   YKKGTDLKKLLDSPAAKKTMLTEWFECNKKHPNARTLTYCDFPKQWTWDNSARCWRPRTPVEKIGRIYYV
CC   SPAAGELYYLRMLLMTVKGAKSYADVRTFEGTVYPTFRQACESRGLLENDNDWHLLFDEAIVSASSLQLR
CC   QLFVTVVMFCSVGNVRSLFDKYWLYFTDDIQHRLRTALSNPAYVVPHDRLLSLLIKELHSAFANSGGNID
CC   DYDLPRSTIHSDDEFGNRMVNEELALDTAALAAHASLMIPXLNSEQQKIFDTIVSRVSESRPGFFFVYGH
CC   GGTGKTFLWNVLISKIRSEGNIVLAVASSGVASLLLPRGRTAHSRFKIPIDIDENSICSIKRGTMLAELI
CC   QKTSLIIWDEAPMTHRRCFEALDRTLRDLLSEHNPSNSVLPFGGKVVVLGGDFRQILPVIKKGTHNSIVD
CC   ASITNSPLWQHVVLLKLTVNMRLFQSGLSEGHRHDLEQFARWVLALGDGMLPVSKRIDESEATWIDIPDD
CC   LLIRASDDKIYSIDTQIRAIVCPNNLTVDEINDYMVAMIPGEMKEYLSCDTISKTSEHIPDFDILYPTEF
CC   LNSINANNFPTHRLALKKGATVMLLRNLNQSLGLCNGTRLLVLSLGHRLLECVILTGSNVGERAFIPRIV
CC   LSTTSSKWPFVLQRRQFPVRVCYAMTINKSQGQTLSRVGVYLKKAVFTHGQLYVAVSRSTSRDGLRILIE
CC   DDDGACSSKTRNVVYHEVLEAVRLM
CC   OSRPA3Hp is similar to the RPA70 subunit of the replication
CC   protein A.
CC   OSRPA1H3p (positions 7766-10012):
CC   MAYSMLSKLELCADNPRICVRVSRLWEFANPNDETQLLHLGLVLIDQEGTSIAAQIYPPC
CC   DLQFREIITEGKVYYLEYYRVREWSRRYRPVNNSLSICFTRWTKVEQVADPAADFPLYTY
CC   SLTPYGGLRQRVDRKEEFTGDISLSGNSACKWYINVNTPEVNSFKESIQGKYEPIKMIEL
CC   PAVGAVRTGAEQKSIAQIKDLNPFMFRKNEFMVTVVIKKIDTESSWWYPACDSCKRTAKP
CC   YGKSYRCGNTSCPAVVSASPRFKLSLIAGDDTGDTKFVLFGRTAQRIIGRPVEMLIQNNP
CC   AGIEFIPKEITDLLEKEFTWNVAFTENTLSSSTVSFQVNLIVRGPDNPCSSALQSPSASQ
CC   ASSAVPSQALSPGLSHGLSIGQCSAAADPSIGFADPIAGIDSPLAASIKHKKPETEYQSK.
XX
SQ   Sequence 12693 BP; 3185 A; 2874 C; 2851 G; 3783 T; 0 other;
     tcggggaaat taaagacaac cgcgaagtgc tcgcaccaca gcgctccggg cgtttttggg        60
     ccggcgtgtt cgcacctgct tgtgtccacg tcgccctatt tggtgtggct gtgttgtgtg       120
     aacccataag cgtactcgca ccgtcactgc tatgtggggc agggagggat gtgggttgct       180
     gttcatggtc ctatcaatgc tttcgttgcc tgtgcgctta gtccattgcc tcaggtttct       240
     ggacctgtct ctgcgtgccc cacttgcagc ttctttggtt cacagtgcac atggagtaca       300
     gggtttttaa caccctgaca tgcttgacca atggtgcagt ttgcacggct ccctaacggc       360
     atgactctgc tcctgcctac ctgccatgcg tgctccgccg aatgcttata tgcagcacct       420
     ggtctaccgt gctccaggta gagcccttcg gcctacggtg tgcatgcgtg atggaccagg       480
     cccacggcta ttttggtctg ctacatcgct ttgatccgct gtgtattccg ttgggcttgc       540
     attgaaaaaa agtcaccaca caacgtctcc tctgtaaacc ctctgcgggt gggctcgctg       600
     ttttgcgctg tcccacatgc catatgctct ggtgcgccaa atagattgcc tccctgctgc       660
     acggcgccaa atagattgcc tccctgctgc gccatgtttt aatgcccacc gcttgcaccg       720
     gcccgctgtc aggtgaggtc caatcaacgt cggcgtccgc cataccagcg tgcgtgatca       780
     tcaatggggc aatgtcctgt tttgccttca gcttcttcct ccccattgtg agagatttgt       840
     ttgtctcctc cgcttttgct ttgctctgct ctgctgtttc cctctcctgc tgacttcttc       900
     agccatgccg acagcttggt gggttgctac ctccatacct agcagatgtc ttcctcatgc       960
     gatttggttg gttggtttga cgctacacgg ttggtgtgca ggtctgcgtg tgggatttcc      1020
     gccagcattg ctgcgtagga tttggtgttc tcgcactggt tagttgcttc cttgatgtgc      1080
     tgtgtcctgg atggtcgatt cttcatcctt tcattttgct tgctgtgggc aggggcaggg      1140
     gaggcggtcg cattgctcta ccgcctgttg gtcgctggca gttcacggtc gagggcaagt      1200
     tgatctcctt ccatcagagt gtgcctgcac cggctcgaag aggttgctgc tcttttcttc      1260
     gctgattttc cccccgcttt tcctttctat ttgttcttat gtttgccctt gccttttcgt      1320
     ctgggttctt ttctcggtgg cctctgttgt gtctgccatg ctgctatgtt gtgtgcgtga      1380
     gaaaataatg ccggttggtg cctcacagat tactgtgcat gggcccgtat aggcccgcgt      1440
     accagtactg gctgcctccc tcttcttata taacccaaac ttctctgggc acttgcctct      1500
     tgcgtagagg ttgctcttgc tggtttttga ccaaccttcc agatcttcct ttctaccact      1560
     cacctaggcc ccatctagca gcgccatggt taatgtgggg gtctcatttg tctctctgtt      1620
     gaatgccgtt gcttggcatt gtcagctccc gctggtgtcc tatctttggg aaatagatgg      1680
     gaatggcatg ctgctagcag gtgttgagct tgcgctccca tcggaagaca tggccggcca      1740
     gattgttagc aagttctttt gggtctgcgc gtctactcaa acaagtgact cgcatgaaat      1800
     ggtcgcgcat caggctgtta ggttcttgca ggctaggtac ggctttattg tccacgatta      1860
     caatcttcag atgttacttt cctaccggag aatagcagcg tctacagtag atgcagctgt      1920
     tacagcctca gcgtgccttg ctaggttcca gtcacgatat gctccaacag atctatcgtg      1980
     tgctggtgtt gtccagcgat gtaacactat atggttcaat tttcttcatg aggaccacat      2040
     gtttagcaac atgcacaacc tttaggggta ttttgtttcc tttagagggt gttagtgttt      2100
     ttcgctactg agtttgtctg caatgagagt gtgcctttat gatgttatta cataatgttt      2160
     tgtattgtct gctttcgatc ttatgttctt cttttgtgca ttgctttcgg ttagttcggt      2220
     gctctctttc ttacgactga tctgacgacg aaaaaatagc tcccctttta tccgctgtgt      2280
     tgttgcctct gagctatgac gagtaatccc tctccgcgag ttcaacgggc ccgtgagagc      2340
     cgtttgcgac gccgtgcttc tattggccag ggtttgtgct tcttaacttg atttagaggc      2400
     gcttcttggg ttagatcgat aagtttgatc gaccagatag ctggggttta tagcattttt      2460
     gcaggctcct ctgttcggcg gcgtaaatcc tgtggtctct aggggaccaa atggttcgcc      2520
     aaatgctgga atagatgtgg agcagtcggt tcctgaacaa gctctggctt ctgatgttca      2580
     tgtgcggtct caggttgcct ttgttgctgg cacaggtcct ttgacccaga attccataac      2640
     caccgctagc attaagttga gcgatagttg tcccatgggc tccataactc ctgacaatgt      2700
     cgattatgct tagctccttt gttctcctca ttgcgattag gaaagagaac cctactagat      2760
     gtgccgcgcc acactgctgc agcaaacagg gaaaaacgac gcctcaagag gtctggttct      2820
     cagccagacc acctggtaag aaaaatccta gaaggtatgg ttaaatatac cttttgtttc      2880
     ccctgtgctc gcttagtgtg gcagttatgt ctgctaacca tttttgcttt caccgatgct      2940
     tgcttcctgg gatttcgaat gcataggtcc cgttcctaca gtggatgaca tcttgccttt      3000
     acctaaggat tacattgcgt ccttaaaagg tttgctcggt gtctactgtc ttacatagct      3060
     tcctttctgt caatcaatgc agttgttaat gcttacaaac aatgcagctt tgtgcccaga      3120
     gcgatcatac tatggtggcc cttcgcatga gtgtccttat tgtggtgccg ttttttggta      3180
     ccaggagagg gtaaagagag atagtgctgt ttctcagaga aggattgtct ataatctctg      3240
     ctgtaggggt ggtaagatca gcctgcctga actaaaatac ccaccggata tgttagcgaa      3300
     gcttctgaaa tttgatggtg atgcacaatc aaagcgtttc ttacgccaaa ttcgatctta      3360
     caactcgctt tttgcattca cttcattagg ggctgatgta gaaaagtcaa ttaacaatgg      3420
     aaccgcacca tatgtcttta aaattaacgg cgttgtgcac catcgtattg gcagcctctt      3480
     gcctcagcgt ggtgcgaagc ccaagtttgc tcagctatac atatatgaca ccgagaatga      3540
     aaccgctaat cgaattaaca ttttcgatag agaaaactca aacgatgagc ctgacccatc      3600
     aattgttaca agacttggcg ctatgctcga ccaacacaat gatctggtca aatcgtttcg      3660
     ctatgctaga gatcgtttaa acgagcatgg taatgagcag attgcactta gactgcttgg      3720
     gtgcaatgct aaagatgaag tccaatataa cctgccaacg agtggtgaga tcgcaggaat      3780
     aatagtgggc gacagctcaa acgatgcgta cacgtatgat gtggttgtcc agtcttcgga      3840
     taataggctg agacaagtct ctgctttgca tccttcctac atggctttgc aatatccttt      3900
     gtttttcccc tacggtgaac gagggttcca cctcggtata aagtacactg atttcccgag      3960
     tattgctgga acatcacggc gatacgtgac aatgcttgaa tactatcgat atcgctttca      4020
     ttataggcta aacaaaccga atccatatac atgttgtggc cgtcttagtg actccatatg      4080
     tgtggatgca tactcaactg ttgagggatc gaggctgaaa tttatacatg accaccaacc      4140
     tgagttacgt tcagagtgtg ttcaagggat tgccgatgcc attgaccatg gcctcgaatc      4200
     tggtgattct gttggcaaaa agtacgtctt gccatcaagt ttcactggag gtcgtcgcta      4260
     catggtccag aattaccagg acgcaatggc tgtttgccgc gtgttcggtt cgcccgacct      4320
     attcgtgacc ttcacgtgca actccaaatg gcaagagata tacgatgccc ttgtgtttga      4380
     accaggccag gtgccggtct gacatgattg tacgagtctt tagcatgaag gtcgatgaat      4440
     tcatatccga tattaaggag ggaaggacct tcggtcctgt gctggcaggt agacgtcatc      4500
     tagacatgtt ttttcctata tcattttgtc atgttagtac tgttcctgct gatatccatg      4560
     cttccatgta gtgttgtata ccgtggaatt ccaaaagcgt ggtctcccgc acatacactg      4620
     tattatgtgg cgtgcagcag ctgacgccga atttagtgct accgctgtgg acagtttaat      4680
     ttgtgctgaa attcctgatg tgtttagtga tcctttgggc tatgccttag tcgatgagtt      4740
     tatgatccat ggcccttgtg gtgacaagaa taaatcatgt gtctgtatga aaaatgggca      4800
     ttgctccaag catttcccta aaggcttcca agaagagacg accatggatg agtttggctt      4860
     tactgtatat aggcgtcgaa atgatggacg atatgtggtt aagaatggaa ttaaacttga      4920
     caatcgatgg gtcgttccat acaacatgaa attactgaaa aaataccaag cgcacattaa      4980
     cgttgaatca tgcaacaaat ccaacatgat aaaatacctt ttcaagtaca taacaaaggg      5040
     tggtgataga accaaactat actttgaaac aactggcaac acaccaaaca agactgttga      5100
     tggtactgtt ttgccaccaa atgagattga tgagtacatc aatgctaggt tcctctcaac      5160
     ctgtgaagcc ttttggcgtg ctttcgagtt tgacatacac tatagagttc ctgctgtgga      5220
     acggttgcct attcatcttc caaatatgaa ttttgttcag tacaaaaaag gaaccgacct      5280
     aaaaaaattg cttgacagtc ctgctgcaaa aaaaacaatg ctaacagagt ggttcgagtg      5340
     taataaaaag catccaaatg cacgaacact gacctattgt gatttcccaa aacaatggac      5400
     ctgggacaat agcgcccgct gttggcgccc aaggacacca gtcgaaaaaa ttggtagaat      5460
     ttattatgtc agcccagccg ctggagagct atactacctg cgcatgctgt tgatgacagt      5520
     taaaggcgca aaaagctatg ctgatgttcg gacctttgaa gggactgttt acccaacttt      5580
     taggcaggca tgtgagtcta gaggccttct tgagaatgat aacgattggc atttgttgtt      5640
     tgatgaggcg atagtttctg cgtcgtccct gcagttaagg caactatttg tgactgttgt      5700
     aatgttctgc tctgttggaa acgtccgatc attgtttgat aagtattggt tatactttac      5760
     tgatgacatt cagcatcgcc ttagaacagc gctctcaaac cctgcttacg ttgttccaca      5820
     tgataggttg ctgtctcttt tgattaaaga attacactct gcatttgcaa acagcggtgg      5880
     taacatagat gactatgacc tcccgcgatc aacgatacat tcagatgatg aatttggaaa      5940
     tagaatggtc aacgaagaat tggctcttga tactgctgcc ttggctgctc atgccagcct      6000
     gatgatacca tgactaaact ctgaacaaca aaaaattttt gacacaatag ttagccgtgt      6060
     tagtgagtcg aggcctggat ttttcttcgt gtatggccat ggtggcactg gcaaaacgtt      6120
     tttgtggaac gtgctcattt ctaagataag gtctgaggga aatattgttc ttgcagttgc      6180
     ttcctcagga gtcgcttcgc ttcttctccc tagagggcgc actgcccatt ctaggttcaa      6240
     aataccgatt gatatagacg aaaatagcat atgcagtata aaaagaggaa caatgcttgc      6300
     agaacttatt cagaaaacat cccttattat atgggatgaa gctcccatga cacatagacg      6360
     atgctttgag gccttagacc gaacgttgcg agatttgctt tcagaacata acccttcaaa      6420
     tagtgtgctg ccatttggtg ggaaagttgt tgtcctaggt ggtgatttca ggcagatatt      6480
     accggttatt aaaaagggga cacacaattc tatagttgac gcatctataa caaattcacc      6540
     gctttggcaa catgttgtcc ttcttaaact cactgttaac atgaggctct tccagtccgg      6600
     tctttctgag ggacaccgtc atgatcttga acaatttgct cgatgggtct tagcgcttgg      6660
     ggatggtatg ctaccggtat caaaaaggat cgatgagtct gaggcgacct ggattgatat      6720
     ccctgatgat ctactaatta gagcttcgga tgacaaaata tattcaatag atacacagat      6780
     tcttcttacc tagcatcgcg tgctattgtc tgcccaaata acttaacagt tgacgagata      6840
     aatgactaca tggttgctat gatacctggt gaaatgaaag agtaccttag ttgtgacact      6900
     atttcaaaaa catccgaaca catacctgac ttcgacattt tgtacccaac tgaattttta      6960
     aactccatca atgccaacaa cttcccgacg cataggcttg cactgaaaaa aggcgcaaca      7020
     gtaatgttgt tgcggaatct aaatcaatcc cttggcttgt gcaatggaac tagattgttg      7080
     gtcctttctc tcgggcatcg tctcttagaa tgtgtgatct tgactggatc aaacgttggc      7140
     gaaagagcat tcataccaag aattgtgctc agcactacga gttctaagtg gccttttgta      7200
     cttcaaagaa ggcaattccc tgtacgtgtg tgctatgcca tgacaattaa caaaagccaa      7260
     ggacagacac tttcaagggt tggggtctac cttaaaaaag cagttttcac acatggccaa      7320
     ttgtatgttg ctgtatctag atcgacctct agagatggcc ttaggatcct tattgaggac      7380
     gacgatggtg cgtgtagttc taagactaga aacgtggtat accatgaggt gctggaggca      7440
     gtcagattaa tggtatattc tcgattgttg atttccacgt gacacgaacc atgtttatcc      7500
     agagtgctgg gatatatttt aaggtgctaa tttcatttta aaatgtagga ttctggtacc      7560
     tagaaccaag tgacaacgtc catgtttgct gctgctctgt tgttcttggt ggctatttta      7620
     tcagctctgt tatcgtgttc ttgtgaaaaa atgtttctct atgttctcag gatcttttgc      7680
     tgtaagcttt gttctctgtt tacatgcagc tcctacttct taggagggcc ttcacactaa      7740
     tgagaaactt ttaccttgct ttcagatggc ctacagcatg ctctctaagc ttgagttatg      7800
     tgctgacaac ccacgcatct gtgttcgtgt ttcaaggcta tgggagttcg ctaatccaaa      7860
     tgatgagaca caattgctcc accttggttt ggttttgatt gatcaggagg tcagttcttc      7920
     agagcactta gcacccagct ttctgtagaa acagattgct ttactaatgt gcttttgaaa      7980
     cagggcacta gcattgcagc acagatatac cctccctgtg atctgcagtt cagagaaatc      8040
     atcactgaag gcaaagtgta ctatcttgag tactaccgtg tgagggaatg gagcaggcga      8100
     tacaggccag tcaacaacag cctgtcaatt tgttttacaa ggtggactaa agttgaacag      8160
     gttgcagatc cggcagctga tttccctttg tacacttact cactcacacc atatggtgga      8220
     ctccgtcagc gtgtcgacag gaaagaagaa ttcacaggta ttctcattgt gttttgggta      8280
     ataaaagcat gacgtacaat gatataatgt ccttcagatc actgacaagt tgcttcctct      8340
     tattgtcaat acaaaaaaaa gatgtcattg gcattattac tgaggtaaca tctgttacga      8400
     cagttcagac gcgcatccga gatggtgata gcctgaagag aagcatttac atacgtgata      8460
     ctaagttagc ctcaaacctt atctattatc ttcattcatg tgaattgcat ttccctagat      8520
     ttgttgatct gtttatgtat tatgtcagtt gactaaccag ctatctccag ctgtactgac      8580
     tttttttctt caacactaca caaatcatac ccatagaaac tatatgctct aacataatca      8640
     ccgtgtccaa caaaccacac atgcgagatt tttatgcact tttttactac atccattcca      8700
     tagcgataca atcttaaatg tggcgctatg gggagaacgt gctacaagct ttcctgtcga      8760
     tgaagtggtt gctgctggtc agaaagaacc acagatagcg atatttgtgg gcactcttgt      8820
     gaggggctat ggtgagtggg ctctcaatgt gtccaaatgt gtttttagac tatgactcca      8880
     attgttttac atatcgtgca ctaacacatt tctttcatag gcgacatatc tctatcaggc      8940
     aactcagctt gcaaatggta cattaatgtg aacactcctg aggtcaactc cttcaaagaa      9000
     aggtttgttc taactttcat ataattcgag tatatttggt ccactctttt acagattccc      9060
     atctaggctc atctgtgcgt tttttacagc atacagggaa aatatgaacc tatcaaaatg      9120
     attgagctcc cagctgttgg agctgttcgt actggcgccg aacaaaagtc aattgcccag      9180
     atcaaggacc tcaacccttt tatgtttagg gtatgttata tgttctgtgt atttaacttt      9240
     gctatcttat agatccatga caataagctc cagctaacat ataatccttt ttacacctag      9300
     aaaaatgaat tcatggttac tgtcgtcatt aagaagatcg acacagaatc atcctggtgg      9360
     taccctgcat gtgatagctg caaaagaaca gcaaaaccat atggaaagtc atacaggtgt      9420
     ggcaatacat cctgccctgc tgtggtgtca gcatcaccta ggtgagtact gcatgtcatg      9480
     agaactggat acctaaaacc aatttagagt ctaaccatgt ttggatccct gcaggttcaa      9540
     actcagcctc attgcaggag acgacacagg tgacactaag tttgtgctct ttgggcgcac      9600
     agcacaacgc attatcggtc gaccagtcga gatgctgata cagaacaacc ctgctggcat      9660
     tgagttcata ccaaaggaaa ttacagatct tcttgagaag gagtttactt ggaatgttgc      9720
     cttcactgaa aacaccctgt cttccagcac tgtttcgttc caagtgaatt tgatcgttcg      9780
     aggtcctgac aatccctgtt cttcagcctt gcaatcccca tctgcatctc aggcatcgtc      9840
     tgcagtgcct tctcaggctt tatcaccagg gctatcacat ggtctctcta ttgggcagtg      9900
     ttcggcagcg gctgatccat ctattggatt tgctgatcca atagctggaa tagacagccc      9960
     attagccgct tcaatcaagc acaagaaacc ggagactgag tatcagtcaa aacctccagc     10020
     tgagcttcct caggaagaag cagaggtaat cgagcaggca tagtctgaat ttttgtcata     10080
     aagcatttct atgttaaaag ttaacattgc taatattgtc gtaatatata taggatgatg     10140
     acaaccttcc actaagccag atagttgctg acgatgctac taaacatagc acgtccaagt     10200
     cctacaagaa aaggtaccaa gctccataaa catgtttatg ttacacataa ggagcaatag     10260
     tttgttctat atgttctaac tgaatttgcc aaacagggct aggccatctc ccggtatagg     10320
     agctgctaag aagttgttca agaataatgg tgatggtgct gctgatggca ggtaaactca     10380
     gcctgtacaa cctgtgctaa aagaagttcg tagaatgtat gactaagcta ttttgcactt     10440
     acatttcagc ggagacaaca atgcctgatg cattgtggga atatgaagct tttgcttgat     10500
     acagttgcag gagagtacac cgtcaggttc agtggcctta catgctgcct ccagcttcgc     10560
     tacggcttca ctgggcaatg tgttatgtac ctatgcaaac tgtgctattg tgttgctcat     10620
     tgtgtgttta tgagcataat acttttgtaa cggaccacga aaacatctac ccatgcgttc     10680
     tgtagttagc taggattcta tgttatcata gatgcactgt gataaccatg aatgctggct     10740
     gttcattgaa cgttctatgc tggacctcct aagattaatt agactgttct aatgttataa     10800
     tccagagcaa tcgaactcga tgttgattct atggttgctt ggttttagaa tccctccata     10860
     cagctgttta ctgaaacaac aatgcgttcc atgctcacgg cacggcgcgt acaacgtatc     10920
     acattgtgtc gtggtactga tttgtactac aaatacatct atttaacctt caacagccag     10980
     cgctccacgc aaaatgtgca gcccatgcct gcacactgac tcccttttta aagagtgaca     11040
     tgccagccta cacagctagc tactcctatg aagggacaac acgacctgct aaaaacgcat     11100
     cccacactct acacttattt catttcagct catcctcttc ttccaccaca gctcagcact     11160
     cctcgccgag tctcacagat tgaatctgaa gaactcctgc tcgaggaaga acaactcttt     11220
     tcctaccatc gtttctacgg gtaagggtgc tcttctctac ctctgttcca gggtatctct     11280
     ctatgccttg ctatgctatg cagtctatac gaaatgcagc cttctgtttc gacgtgattg     11340
     cattgcctga tgcttcggta ataatacatc cggttctatt ttcctagccg cgcatgctgc     11400
     ctgcgcttgg cgataggaac aagagctatt tttagaaaat aaaacatata gcaagaaaaa     11460
     acctagcaaa acaattaatc cggtctaata ctattatgga tgttctttat tagggatgca     11520
     gtttgattgg agcgctgagc taggcgtggg gcagccacaa cgcccttctt cctatggaac     11580
     caatcgtcca ttactagcaa caaaattctc taggcgcaag gagatatcgc atatgctagc     11640
     tgacatcata tacacaagag ctgttgttgt taaggtgtct ggagctggaa atccgaccac     11700
     aacaagaata tcagcgatga taagcgccgt ctgcaggtgt caaattgatg atttcgcatt     11760
     gctccctttc cgcccaaaga tgttcattgc catcttcatg gatgccgatc tgcaggaaga     11820
     actgtctgaa agagctttca aaaaggtatc gttcaccttc aaggcaactc gcctcacatt     11880
     tgagcctttc aagatgaatc ttggtagcac tgtaaatcca ctgtgccagc gggttatact     11940
     tgcgctagaa ggcgtgccac cagaatcatg gaacaaagaa gctatatcag agctcatgga     12000
     cagttgttgt tttgtagagg agttgtatgg agagcaccat atccaagaac tctcaatttt     12060
     taagttagct gcctggacaa cagattgtga ccttataccc aaggtgataa gctggaacat     12120
     tgagactaaa gaaggtcgtc gaggatcagc aaacattagt tggatgcaca atgcaactct     12180
     gtcagttgtg ctggttcata tagagaagct gttcgactac actgacgaag acagtgggag     12240
     tgatagcgat ggagaagttc ttagggaata tgagcagcaa aggccccgtg tccctgttgt     12300
     caaaacattt agctgggtgc ccttgaagat tgatctaaac aacggaccag ttgaaggcgg     12360
     tacaccagcc atagctccac gccgtcttcc tcttgaagtt cgcaggcgtt gtcgcctacc     12420
     ttaattacat aaaacactgc cctctgttat gtatgcttta aagcctaaca ttttcacctg     12480
     cctctccatg cttatggatc atgcgaacag ctgcttagtg ttttctctac gtgttctgtc     12540
     agtttttgtt ttcctaacaa ttagcctgct gagcaaggcc taaacttcca gttcagctaa     12600
     aatatgattc gtatattcct cttagcaatt tactcctttt acatcactga atatgagctg     12660
     ataaggcgcc gcgaagcgcg ccgcaagttc tag                                  12693
//
ID   RBTVL_LTR   repbase; DNA   ; ORY   ; 979 BP.
XX
AC   AE017121;
XX
DT   04-AUG-2005 (Rel. 10.07, Created)
DT   05-AUG-2005 (Rel. 10.07, Last updated, Version 1)
XX
DE   Rice tungro bacilliform virus like LTR-retrotransposon (long
DE   terminal repeat).
XX
KW   LTR Retrotransposon; Interspersed Repeat; RBTVL_LTR.
XX
OS   Oryza sativa (japonica cultivar-group)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
XX
RN   [1]
RP   1-979
RA   Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y., Sano Y.;
RT   "Reconstruction of putative DNA virus from endogenous rice tungro
RT   bacilliform virus-like sequences in the rice genome: implications
RT   for integration and evolution.";
RL   BMC Genomics 5(1), 80-80 (2004).
XX
RN   [2]
RP   1-979
RA   Jurka J.;
RT   "A recent copy of LTR-retrotransposon related to Rice tungro
RT   bacilliform virus.";
RL   Direct Submission to Repbase Update (04-AUG-2005).
XX
DR   Genbank; AE017121; Positions  203379  204357.
XX
CC   LTRs are 99% identical. Present in multiple copies in the rice
CC   genome.
XX
SQ   Sequence 979 BP; 312 A; 190 C; 226 G; 251 T; 0 other;
     tgggcgtgga agaagaaaaa aaacgaagat ttcagaagac tactcaagga ggaatccaga        60
     agaaggaatc cagaaggaca ccctataagc ataaaggaac aatatagggt gcggtgaatg       120
     acatatcact gtgaagagta aaactttcgg tgaaaaggcc tcgactttag ccagctcccg       180
     tgaagataca gtagcgaaga gataagcagg aggcacaggc gacgccatcc ctggcctcta       240
     taaaaggaga cgttggcctt cactccggag acacacaaca acaacgaaga caccattcag       300
     agcaaagctt ccaagcgcgc tctcaccctc cattccaccg ttcttagtag tagtgacttt       360
     agcctacctt gcatagtata ttgaagcaag gagttgtgta ataacgctgt gtaaggtaag       420
     aacagcttgc ttgtacctac cttcgggttt cccgaaaggg aaaaccgtat gtaagcttat       480
     ctgtttaata tgaagtaatt ttccttaagt attcctgcac gtttgttcta gacaagtgtt       540
     tatgctaagg accctatagg agaaacctct tcggtttgtt ctcgttttta gcctgcatct       600
     tgcataggcg tctggagaat cggtatccgt agagaagtgt tccctttggg tggaactgcc       660
     tggggagacg ataaactctt agctagaaca agtgtgactt ggaatatctt gttaagttgc       720
     ttctaaaaag atagataggt gaggcatacg gtgagtaccg agtaggactt tacatcatcc       780
     gaagcaagct tctaaggctg tctaaatagg attcgccacc ctgcaaagat cctaaagtta       840
     aaatatctct cgaagtgaac agtaatttaa acagtaaact gaatagtgtt tttgaatagt       900
     aatcagccga ataaacagta aactgaatag tattcagccg aataaatagt gttttgaaca       960
     gtgtatattg tctgaagca                                                    979
//
ID   SZ-37       repbase; DNA   ; ORY   ; 11996 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice retrotransposon SZ-37, incomplete sequence.
XX
KW   LTR retrotransposon; SZ-37.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-11996
RA   Jiang N., Wessler R.S.;
RT   "SZ-37: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 93-93 (2002).
XX
CC   [1] (Consensus)
XX
CC   Incomplete sequence.
XX
SQ   Sequence 11996 BP; 3465 A; 2884 C; 2558 G; 3089 T; 0 other;
     tgtaggatcg agatgtcgac tagagggggg tgaataggcg atttaaaact aaatgacacc        60
     taatcaaaac taacctaagt tgctaggctt ggtgagggtc aactctaact aagcaactaa       120
     gttatgtttt gcaaacctag ggtgatagtg gctcaattat atctctagga aagtaaatca       180
     cactcctatg tcaatgttta gcaatcctag ggtgatatga tctcaagttt gtctctagaa       240
     atgtaaattg cacaaatgta aatgcgacaa tcaaatgaga caaggaaaca agagattttt       300
     caccgaggtt cggaaactcg ccggtttcct actccccgtt gaggcgagcc caactccacc       360
     gctcaaccac gaagccaccg cacgccccct tcgtcaaggg gtgggcaagg cgagagccgg       420
     cccacagaga ggactaccca agcctcgatc actagggtag ttcttccttc actccgaaga       480
     tagtgaactc caaaccactc acaaaccggc accgggcctc ctccacaatc ttctcggaga       540
     ggtcaccggg caacttctcc acaagccgac taggaggcgg caacctccaa gagtaacaag       600
     taatgacccg gcgtggagat gatcaagtgc cacactagct ctacaatgga agcaaatgca       660
     cttgactctt gtctaatcaa ccctctaaca cactagatgg atgaacacaa agctcaagtg       720
     agtgtgagag aggtgcaagg ggtgtatgca attaaattga gtgccaagag agtccccttg       780
     ctgctggtgg gggagtattt atactcccac ccaccaaaac tagccgttgg gggcgaaatc       840
     ccccaacttt gtgctctgcc ggtctgaccg gaggtatgtg gccggtcaga ccgtgctact       900
     ctgcaacggc tagaaaacta gccgttgaag tgttgttaga gggccccatc ggcctggccg       960
     gtcagaccgg cgttgagtgg gcggtcagac cggcctcggc tcggttagac cgccatcggc      1020
     tcggtctgac tgactacggc tccgtcggct ctgtatcggc catcccgagc agcaccatct      1080
     cggcctccag ggggccggtc tgaccgggca tgtgccgccg gtcagaccgg ccttatgcgc      1140
     cggtcagacc ggccagggca cgccggtcag accgccgcta tgtggacggt ctgaccatcc      1200
     ctggtcaggc caaacccagt gaaagtgcaa agtgattttc gtgtgtgtga tgaaaatgtg      1260
     agcacaagtg aaaatgcaat gacctaatgt ggcaattaaa atcatctctt tgctaggtca      1320
     ttacccctct taatagtacg gcgaaactaa aaataaacta gcaaatttga tcgccctaca      1380
     cctcgattaa ttctaaatta aagcgctagt tttaccgtct tctttccctt tgctttgcgc      1440
     cgtcaatttt aatccatcga taatcatcca tgtgcacata tgatgtggac ctaacttaaa      1500
     atgtatagtt caaagacaac ggttagtcca caattagcgc ttgtgattaa ttaccaaaat      1560
     taacaccagg ggcctagatg cttcaatctc cccctttttg gtaattgatg acaaacacca      1620
     caaatatata taatcaaaca tagagcagat ggacatatat tgcattgaca agcaaaagct      1680
     ccccctaaac atatgcataa caattacaaa tagcaaatat ggagccaatg cacatttcaa      1740
     tttcacattt caacatagca caacacatat gcaaattata atgtgaactt cacatatgaa      1800
     tcaaccgaat gcataagatg gtcacaagta tatcaatgta actccaacca tgcatcatag      1860
     cacaagttca cattaagacc acatcaaggg ctcacaaata aaacataggc tattacaaga      1920
     ccacaaaggg tccaaatgac atagagagtt taacaaaatg acaaataaca cacaagatag      1980
     agtaatagcc catacccaca caaaatatag cccaaacctc cttaacctat taaatatgag      2040
     gtgactaacc tcactactac tagtcccaac ccaacataaa acacactttt ctcccccttt      2100
     tggcatcaag caccaaaaag gtcttcactc ttgtggagga gaaggaggac acgccgaagt      2160
     ggaaggatga gaagcatcac gacgacgacg atgagaagct tgggagctct ccaacatttg      2220
     gactcgagaa tccaatatac ccactcgagt gtgcaatctc cccacggaag cattcaagtc      2280
     tccaacatct gtgcgcaagc cacgaacatc ctcatgcaaa gcttcatgcc cggtaaacaa      2340
     gcgttgaatg ctttcactta gggtattaat agccccaagt accgggttga agtactcgtt      2400
     gggttgcatt ccaaaatagg catactgagg gtgaaagaag gcatttggat catacccatg      2460
     aggaggagga ggtgctgagc ttgagctagc tccaggatga gaggagggcg ccaccctagg      2520
     agcacaggga gctccaagct gaaggcgggg cttgtactgc ttgtgcttct tcaaattctg      2580
     cctagcagcc ccaagcttgt cttgaatcaa cctcatgatg taaggggcat aatagattcc      2640
     ctgagtgaag gtccccttgg agatggcaat ctcttgcagc atgagagtca caatgtcgaa      2700
     ctgtcggccc tgaatgattg catcgatgac gtgccaagcc acccccctaa tgtcatcatt      2760
     gttacccagg cgagggagga tggtagctct cacaatcttg ttaaccacac tcgggatggt      2820
     cctcaagccg gcaaccttcc catatgtgta ccgcgctcca tcttcataaa actgagagag      2880
     gtagtctatg gagagcggat tatgggtgtg ctcctcatgc aagtcatctc caaagtccaa      2940
     gcgaatattg aggagccgcc ggaattgcct cctagagata gaacactaga gggtgtcgga      3000
     catccacttc atctcactat agtccccagc cacccacact gtagcataaa actgccggat      3060
     caaatcttca ttgtaatctt gcttaagagt cataatccgg tcaatgccaa cagtcctgaa      3120
     gagatcctgc aagccctcaa actctagagt ctcattgatg tctctccaag agatccactt      3180
     atgctctgca aaagctttcc ctgcatagac ttgctcatac acactcttct ggaaagcggt      3240
     gtgaaaacgg ggatccgggg tgtcccgagg cctcaaaaac tgatcatggt gcctcaagat      3300
     ggtatactgt gatggattcc tcatgttcac aacaaactgg atggatggat caatgtgcat      3360
     atcatcactt tcttcatcct catactctcc acttccactg tcatcatctc cactttcctc      3420
     ctcactagcc ccctcaacat tggcctcaac ctcttcatct ctttgagcgt aatcctctcc      3480
     actcgattcc tcaggctcac tcacaggatc cggagttggc gcacgacgac catgacgagt      3540
     gcggggaggc atcactgaaa aacaggagca aaggatatat aagtaataat tttagaaacc      3600
     acatagtgaa gtgggaggaa gggggagtac ggcctgtcag gggaggtcag accgagagcc      3660
     acggccggtc agaccgcatg cctgaagtcg gtcaaaccaa cggccgacgg ccggtcagac      3720
     cgacggctca aggccggtca gactgccact gacagtagca ccaccgaatc cttccataat      3780
     ccacacaaat gattctaaaa attgctagga cagtgttgca caagattgaa acatgaacat      3840
     caaggtgtag gtctatttca tcaagattaa agtaatgggg gaaactaccc ttaaccctag      3900
     agattgaaat agatcgattt gagagcaatg cacaagaggg agagagattt actggttgaa      3960
     ggagttgaat cacaccaaga aactaccctc tattggtgca aatcgaagaa cacctcttcc      4020
     ttcacctagg gttccatgcc atggatcaca aactcaataa aatctcaaat caatccatgg      4080
     aatagagaga ggaagaggag gagattcact tacggtgtaa ccggagtgat tttgacggtt      4140
     gaactggatg gatttggtgg agggaggtgg ctagggtttg ggagaggaga gaggagaaga      4200
     aatttcgagt tggagaagtg aagagatgag atgggatgag gaggggtcgc gtaggaggag      4260
     gaggaggaag aaaggacaaa gtcctgggcc caccatccca ggccggtcag accggctata      4320
     tgcggccggt tagaccgccg gggtgcggcc ggtcaaaccg gctatatgcg gccagtcaga      4380
     ccgccggggt gcggctggtc agactgggcc ctagaggccg ttcagaccgc cgctactagg      4440
     ccggtcagac cgcgcatata gcgccggtca gaccgcctag cccctagccg actgtgcaca      4500
     gcccttgcac agttcggcta ccccgcacaa taaaattcaa caaaaaattg atttttggag      4560
     caattttgaa atgtgtgagt tgaaatattg ccaaccattc ataatatttg aaatttatga      4620
     agatttgcaa caaaactcat ttgagtgcta ggaggtgacc atttatggtc tataggggtt      4680
     tttgggcgaa tttgattttc aaacaacttt tgaaatattt ggtttttgaa tatgatttga      4740
     acaccaaaaa catttcaaaa cttcttctct accaactttg ttttgaaact tttttcaaat      4800
     tccttctcaa tctcattttg gggtttaatc tcattttggc caaaaaacaa gattctagtt      4860
     tcttcaaaag agggccaaaa tggcattttc attcaaaaaa catttttctt gcaaagtgag      4920
     ggttggaaaa catataggga accttttgaa acattttcca agagatagtt ttcaaattac      4980
     attgattttg caaaagtttt gacttatgtt gacttttagt tgatttgctc acatataaaa      5040
     ggaagtggag cacatgcaag agtgcaaaac tcccccttaa tgtgacatgc tccattttcg      5100
     caatgaagaa ccaaatggca ataaatccaa agcataagag caaataggag caaatataca      5160
     atatgcaaaa gaagcaacca tggtgcacca tctcaagcca cattagagaa gtctatgaca      5220
     attaactcat tcctcaactt gcaaaagcgg gtttcatcaa gaggcttggt aaagatgtca      5280
     gctagttgat ccttggttct tatgtggcta atgactatgt cacacttggc aacatggtct      5340
     cttaggaagt gatggcgtat gtcaatatgc ttggttctag aatgttggac cgggttattg      5400
     gctatcttta tggcactatc attgtcacat aggagtgggg ttttggtgaa ggatatgcca      5460
     taatccaaca agatttgttt catccaaagc aactgggcac aacaactacc cgccgaaaca      5520
     tattccgcct cggcggtaga gagggctacg gagttttgtt tcttggatga ccatgacaca      5580
     agggatctac caagcatttg gaaactacag gatgtgctct ttctatccac tttgcaaccg      5640
     gcataatccg aatcggaata gccaacaagc ttaaatttag caccttttgg gtaccacaag      5700
     ccaatagtag aggaatgctt taaatatctt agaatccttt tcacggccac taagtgacac      5760
     tccttaggag cggcttgaaa ccgtgcacac atgcaaacac taaacatgat atctggccta      5820
     gatgcggtaa ggtaaagcaa gctaacaatc atagaacgat aaagctttaa atctactggt      5880
     ttacctccct catcaaggtc gagatgcccg ttggttgcca tatgtgtctt gatgggtttc      5940
     gcatcctcca agccaaacct cttgagtaga tccttaatgt acttggtttg gctcacgaac      6000
     gtcccatcct ggagttgctt gatttgaagt ccaaggaaga agctcaactc tccaatcatg      6060
     gacatatcaa attccctaga catcatatca ccaaattcct tgcaaaatac ttcattagta      6120
     gaaccgaata tgatgtcatc aacataaatt tggcacacaa agaaatcatc accaatgatt      6180
     tttgtgaaaa gagtggtgtc aacttttcca attttgaaat cttttgacaa aagaaaatct      6240
     ctcaatcttt cataccaagc cctaggagct tgttttaaac cataaagagc ttttgagagt      6300
     ttgtaaacat ggttaggatt tttaggatct taaaaactgg gaggttgttc aacaaagaca      6360
     agttcggcaa tttcaccatt tagaaaagca cttttcacat ccatttgaaa tagttttatg      6420
     tcaaaacatg atgcaaatgc aagaaggatg agaatagcct taagtcttgc tacgggggca      6480
     aaagtttcac caaagtccaa accttcaact tgtgtgaaac cttgtgccac caaccttgcc      6540
     ttgtttctta ccaccaaccc gttctcatct tgtttgttcc taaagaccca ctttgtccct      6600
     atgacattgt ggtctctagg tctttcaacc aaagtccaaa ccttgtttct tgcaaagttg      6660
     ttgagctctt catgcatagc attcatccaa tcaagatcac aaagagcttc atctacatgt      6720
     tttggctcaa gacaagaaac aaacgagtaa tgttcacaaa tcgaagcgac acgagatcga      6780
     gtttgaacac ccttactaat gtcacccaac acttggtcaa ttgggtgatc cttggaaaga      6840
     gcggtgtgta ttcttggtgg aataggtgga tcttgtgcct tctcctcctc cacttcaact      6900
     tgagcttgac ttggcgtagc ggaagtagat gacttatctt gagtggaggt ggatggcttg      6960
     tcttccactt caataggctt gacatctcca attgacatgt tcttcatagc tctcatcaag      7020
     ccttcatcac ctacatcatc caaattctcg tgcccctctt gggagccatt agtctcgtca      7080
     aattgaacat cggcggtttc ttccacaata cctttattct tgttgtagac ctggtatgcc      7140
     ttgctatttg aggcataacc tagaagaaac ccttcatcac accgattttc aaatttggtt      7200
     agtctaacac cctttcggta aatataacac ttgcaaccaa aaactcaaaa ataggcaaca      7260
     ttaggcttcc tcccaacaat tagctcatag gaagtctttt tcaagagacg atgtaaataa      7320
     agcctattgg ttgtatggca agcggtgttt atggcttccg cccaaaagga atcggaaaca      7380
     ctatattcat caagcatagt ccttgccatc tcaatcaata tacgattttt cctctccact      7440
     acaccatttt gttgaggtga gtaggtagcg gaaagttcgt gtttaatacc aagatcatca      7500
     caatagtcct cgatattggt attcttaaac tcggaaccat tgtcacttct aattttcaca      7560
     agagtgcaac taaattcatt ttgggccctt tttgcaaact ttttgaaaag ctcggcaaca      7620
     atagacttat catgcaaaaa gaacacccaa gtatagcgag aataatcatc aacaatcaca      7680
     agacaatgac tattaccacc aatgctctta taggttgttg ggccaaacaa atccatatgc      7740
     aagagctcca atggtctaga tgtggacatg atactctgag taggatgaga acatgcaact      7800
     tgcttgccgg cttgacaagc actacaaagc ttatctttct caaacttcac atcttttaag      7860
     tccacaacta gatcacgttt tgaaagtttg ctcaattgat tcataccaac atgggctagc      7920
     cttctatgcc aaagccaacc caaagaagtt tttgcaacta aacaagtttt caaatttgct      7980
     tcactagaat tgaaatcaac caaataaaga tttccatatc taaaaccttt gaacacacaa      8040
     gacttgtcaa gaaggctaga aacaataact tcttgcggta agaaagcaca tgacaagcca      8100
     agatcacaaa ttcgagcaac cgaaagcaaa ttgaaattta gagatttaac aagagagaca      8160
     ttatcaattg acaaatcatt ggagatagca attttaccta acccaattac ctttcctttg      8220
     ctattgtctc caaatgtcac tttctcttgt ttattccctc ctacttcaaa tgtggtgaac      8280
     atagccctat caccggtcat gtgttgagtg catccactat caaacaccca atggctccca      8340
     ccggtgcggt agttcaccta caaaagaaga tcaagctctt ttaggtaccc aaacttgttt      8400
     gggtccttgg aggttagaga ccaaagcttt gggcacccaa atggcattct ttttaccacc      8460
     gagtataggg gaacccacat atctagcaac aatgctacca tcatgagcct tcctaagcat      8520
     ataatgagaa tcaaacatgc atgtcttagg aggtttacca caaggacaat cattcaccaa      8580
     atgcccaacc tcacgacact tggagcaata cttaccattg ctcttgacaa aacgagtggc      8640
     acagtgagaa ggtttcttac ccttctttgg aatgaatcca agtccctcct tgttaaggat      8700
     gcaccgttgc tcactcaaaa tcttgtcaag agtgttctta tccttgaagc acctctccaa      8760
     gctcttgttg agcttagcca cttgctcttt aagctcattg ttctcaacaa caagtgaggc      8820
     atcacaaata gaaacacaag aggtagagct agagctagac atatccacaa gatcatcaca      8880
     agaggtagaa atgctagatg atgcaacatg agcaatatgg caagtagcac tatcaccaag      8940
     caaatcacaa gatatgccaa catcaatgag agctccatgt tgagtagtgg aaatgaggtt      9000
     gtcttgagct tccttaagct tctcatgaga aatggtgagt ctctcatgag aagtctttag      9060
     ctcctcatac aagacctcca aagaagcatg atccttcttt agggccttga acttgacaat      9120
     ctccttctca ctataagcat agagctcctc aaacatactc acaagctcat cataggaaac      9180
     atcatcacaa tcatcatcac tctcactatc actaagagat gttaccttag aagagccctt      9240
     tgccatgaga caaagtggag cgaagagtga tggagcctcc ttgatggcaa caacggccat      9300
     cttcttcttc ttggagcttg tatcatcacc atcttcttcc tcggacccgg atgaggcgga      9360
     gctctcctca tttgagtccc attccccgat gaaggcctca atcttcttgc cttacttctt      9420
     gagctttttc atgagcttgt agcctccact cttcttcttg gatgacttgt ctccatcatc      9480
     atccttggaa gggcacttta aagcaaagtg tcccttctca ccacactcaa agcacctcaa      9540
     gttggagaga gtcttgttgg gtcttctatt tcttctccta ttggagttgg agccccttcc      9600
     tctctccttt ctccttccca agagatcatt gaaccttcta gcaagaaggg caatctcttc      9660
     ctccaagttc tcattggctt cattcacctt gccattgccc ttgtcttcaa cttcggcttg      9720
     gcgagcaatg cacttcttgg aaggtgaggt ttcctccatc tccttcttct tcaacttgta      9780
     catgtcattg gtgttgatct tccccaagag gcttgccggt gtcatccttg acatgtcgga      9840
     gttgatgagc atggtgacaa gggtctcata cttctccggt agagccctaa gcatcttttg      9900
     ggcaacctca agatcggtgt agtttgcccc aagccccttg agatcatcca caatgacatt      9960
     gagcctccca tacatgtcat tcacactcat gaggcaacat ggagaatgtc tcatattgga     10020
     tcttgaggaa gtgaagcttg gcatccttgt actcacttgt gccctcatgg atttccacca     10080
     acttgttcca aatctcatat gcggtctcaa ggttgctcac tctatcaaac tactcttgga     10140
     tcaaagagtt gaacaaagca ttcatggctt gggcattgag ttagaggttg cggtgatcaa     10200
     tctccgtcaa gggcgtgccg gtgatagcaa agcctacatc cacaatactc caaatatgga     10260
     agctcatagc tttgaggtga gtagacattt taattttcca agtggtatag tttgtgccat     10320
     taaacatggg agccttccct acatggttca cctcgttcga catcttctct ctaggcggtg     10380
     aagcccaatc aagagagacc aagctctgat accacttgta ggatcgagat gtcgactaga     10440
     gggggggtga ataggcaata taaaactaaa tgacacctaa tcaaaactaa tctaagttgc     10500
     taggcttggt gagggtcaac tctaactaag aacctaagtt atgttttgca aacctagggt     10560
     gatagtggct caattatatc tctaggaaag taaatcacac tcctatgtca atgtttagca     10620
     atcctagggt gatatgatct caagtttgca tctagaaatg taaattgcac aaatgtaaat     10680
     gcgacaataa aatgagacaa ggagacgaga tttttcaccg aggttcggaa actcgccggt     10740
     ttcctactcc ccgttgaggc gagcccaact ccaccactca accacgaagc caccgcacgc     10800
     ccccttcgtc aaggggtggg caaggcggga gccggcccac ggagagaact acccaagcct     10860
     cgatcactag ggtagttctt ccttcactcc gaaggtggtg aactccaaac cactcataaa     10920
     ccggcatcgg gcctcctcca caatcttctc ggagaggtca ccggcaactt ctccacaagc     10980
     cgtctaggag gcggcaacct ccaagagtaa caagcaatga cccggtgtgg agatgatcaa     11040
     gtgccacact agctctacaa tggaagcaaa tgcacttgac tcttggctaa tcaaccctct     11100
     aacgcactag atggatgaac acaaagctca agtgagtgtg agagaggtgc aaggggtgta     11160
     tgcaattgaa ttgggtgcca agagagtccc cttgctgctg gtgggggagt atttatactc     11220
     tcacccacca aaactagccg ttgggggcga aatcctccaa ctttgtgctc tgccggtctg     11280
     accggagata tgtggccggt cagaccgtgc tactctgcaa tggctagaaa actagcagtt     11340
     gaagtgctgt cagagggctc catcggcctt gccggtcaga ccggcgttga gtgggcggtc     11400
     agaccggcct cggctcggtc agaccgccat cggctcggtc tgaccgacta cggctccgtc     11460
     ggctctgtat cagccacctc gagcagcacc atctcggcct ccagggggcc ggtctgaccg     11520
     ggcatgtgcc gccggtcaga ccgccttatt gcggccggtc agactggcca gggcacgctg     11580
     gtcagaccgc cactatgtgg ccggtctgac cgtccctggt caggccgaac ccagtgaaag     11640
     tgcaaagtga tttttgtgtg tgtgatgaaa atgtgagcac aagtgaaaat gcaatgacct     11700
     agtgtggcaa ttaaaatcat ctctttgcta ggtcattacc cctcttaata gtacggcgaa     11760
     actaaaaata aactagcaaa tttgatcgcc ctacacctcg attaattcta aattaaagcg     11820
     ctagttttac cgtcttcttt ccctctgctt tgcgccgtca attttaatcc atcgataatc     11880
     atccatgcgc acatatgacg tggacctaac ttaaaatgta tagctcaaag acaacggtta     11940
     gtccacaatt agcacttgtc attaattacc aaaattaaca ccaggggcct agatgc         11996
//
ID   SZ-5LIKE    repbase; DNA   ; ORY   ; 1064 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice long terminal repeat SZ-5LIKE.
XX
KW   Long terminal repeat; retrotransposon; SZ-5LIKE.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1064
RA   Jiang N., Wessler R.S.;
RT   "SZ-5LIKE: LTR from Oryza sativa.";
RL   Repbase Reports 2(7), 113-113 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1064 BP; 350 A; 274 C; 160 G; 280 T; 0 other;
     tgtatgatta aacacaagta atcaagtcta ctagagaaag agtgaatggt aggaacacca        60
     aaaatcgaac ttttagtgca aataaaggtt accctcgaat ctaatggaga tgcaccagtc       120
     aaacttccag ataaaagcta gttaggccga accctagccg ccggttagac cgcagtgatg       180
     ccatcggtta gaccgcctac cacccatcgg tcttcccgct agtctgaccg ctcctatgcc       240
     gttggttaat taaaccgtcg gggttcagag aaaaacacac caaagatgct cttgaagatg       300
     gatcaacttt attgcatctc ataaagtgca tctaaagcat tcatctctaa actcacgaac       360
     tagaattcaa gcgtcgaagc gaaacctatt ttttttctct cccaaaaagt tgatatagat       420
     gtatacttct agcctcaacc cctgtactat ttatactcaa aacatggttg tccctagcca       480
     cgaatccaac tagaactagg actcctaatc atataggacc ccaacaaaat aactagggaa       540
     ataacatccc catacaactc tatactctaa tcttcccaaa cttggactcc aattaaaatt       600
     tgactccact ttccatatga aaacattcac ttccacgtac attattctct atcctgagca       660
     tccttgcatg atatccttga tcgtctgaac ttcaactttt cccaagctta gtctcgatcc       720
     atcattggct atactctcat tgcctcaagc aacgcatgca catgaacaac aaagaaactc       780
     tacatccaag tgcaagttcg caccaacttg actcatatca gcatacaata gtatcacata       840
     tgaatagaaa accgtctaaa agttatataa tgaagcaatc tataatttac acgaaacaac       900
     ccgaaaccga ctccctctta gagtctgtcg gtatgatcgt cggtcaaccc ggtctaacga       960
     gtggtctccc agtgccgacc gcattgttca ccgaccgaaa acactataca tggtattttc      1020
     aacaaacact catctttaaa aattaatcat cacatgattt caca                       1064
//
ID   SZ-54       repbase; DNA   ; ORY   ; 5202 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice retrotransposon SZ-54.
XX
KW   LRT retrotransposon; SZ-53; SZ-54.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5202
RA   Jiang N., Wessler R.S.;
RT   "SZ-54: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 108-108 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-54 has 391bp LTRs.
CC   Internal region is related to SZ-53.
XX
SQ   Sequence 5202 BP; 971 A; 1517 C; 1799 G; 915 T; 0 other;
     tgtcaagcgc ctgggcgctc aacgacggcg ggccgtgact acgtaactcg tagtcgcgct        60
     ccagtcctca cctgcgaggt tatacccctc agctagtggc ttaacagaat aagagggaga       120
     ttagacgata actttcatgc tttcctctca aatatttcgg tacaagagta tatagccctc       180
     cggctaacta acttggaaat aaacgctaac aacttggaaa caaaccctcc tagaatcaag       240
     gctactccga tcctagccac tgagcccgtc cttgccatcc acggtcacgg tgatcgcgct       300
     ctgcgccgcg acacgcgctg cggctcgctc cgcagctctc cgcacatctc gcgcccggcg       360
     acgccgtgta taggccgtgc cccacatgac atctctcccc tcctcgcgaa tcagctcgtc       420
     ctcgagctgg aactgaggat actgctcgcg gaaggcgtcg aggtcttccc aagtagctga       480
     ttcggccggt tcgccacgcc agtgcacgag aagttgacga acgccgcgcg ctagatgggc       540
     ccgttccacg cgagccggct ccggcgtgac cacgccgtgg tggatggggg gcagctctgg       600
     cagcgctgct ggagggacgc cgacgaactt cttgagaacg ctgatatgga aaacgtcgtg       660
     gatgcgcgcc tggggaggaa gagccaaccg gacggcgacg tcattgatca actccgtgac       720
     gaggtacggc ccgatgaagc gcggcttgag cttgccggag gtagcttgtg gcagtgaaga       780
     catggtgcgc tggcgaagac gcagcaacgc ccaatcaccc acctggtacg aaacgtggcg       840
     atgctgacgg tcatagtggc gcttgtgcac caactgcgcc tgctccaggc gatatcggac       900
     gtcggcgagg aaggcttctc gttcctccat gtcacgtgcc acggcagcca cccgggtttc       960
     gcccggctcg tatgaacgga gggtgggtgg gtcgcggccg tagacgacgc ggaacggagt      1020
     ctcccggagt gaagtctggt acgccgtgtt gtagacgtac tcggcccagg gaagccaccg      1080
     gagccactgc cgggggcggt cgccggtgaa acaccgtaag tacatgacga tgacgcggtt      1140
     tgccgattcc gtctggccgt ctgcttgagg gtggaaggcg gacgtcatgt gcaacttggc      1200
     gcccatcagc ctcatcaact cgcgccaaaa cagcgaggtg aacaccgggt cacggtccga      1260
     gaccatggac tgcggcatac catggaggcg cacgatgtcg ttgaagaacg cctacgccac      1320
     ggtctcggca gtgtacgggt gcgccagcgg gatgaagtgg caatatttgc tgaagcggtc      1380
     gacgacggag aggatcaccg acttcccgtt taccctgggc agcgcctcca cgaagtcgag      1440
     cccgatgtca gcccagacga cggtgggaac gggcagcggc agcagtagtc cggcggggtg      1500
     gaggtgctcc gtcttatatc tctggcacgt gatgcactcc cgaacgaagt cctgcacaca      1560
     tcgacgcatg tttggaaaat ggaaatcgcg gtggaggcga tgtagtgtgc gctggacccc      1620
     ttcatgccca tcgtcgtgga ccgctgccac gatctctggc aacagcggag atgttggcgg      1680
     tatgtagagg cggccgtcgt aggtgatgag gccgtccgtg atcgcccacg gcgccgcccg      1740
     tgtgccagcg acgatttcgt cgtggatcgc caccagagcc gggtccctgg cttgagcttg      1800
     gcggaggcgg tcgatgaagt cgaagcgggg tcccgagacc gccatgatcg tgctcaggga      1860
     agcctcctcg gtgtcccggc gggacagggc gtcagccacc gtgttcgtcg cgccggactt      1920
     gtactccacg gtgaaatcaa atcccagcag cttgcccacc cagtggtgct ggggaatcgt      1980
     ggcgaggcgc tggtcgagga ggtattttag gctgtagtgg tccgtcttga cgtagaagcg      2040
     gcgcccccac aagtatggcc gccagtggcg gacggcgaga acgagaccaa tgagctcgcg      2100
     ctcataggct gccaaggagc gatggcgggg cgccaccggc cgactgaaga acgcgatcgg      2160
     gtggccgtcc tggatgagga ccgccccgaa gccatacgtg gacgcgtcac attccacgat      2220
     gaagggcttg gcgaagtccg ggagcgccag cacaggcgcg gtcgtcacgg cctccttgag      2280
     ggcgaggaag gctgccgcgg cgtcggcagt ccatgtgaac ccgtccttct tcaggagcgc      2340
     ggtgagggga gcggcgatgg agccgaagtt gtggacgaac ttccggtaat agcccgccag      2400
     gccgaggaag ccgcgcacgg cacgcgcgga gcggggctgt ggccactcgt ggatggcctg      2460
     gaccttagcg gggtccaatg ccacacccga cgccgagatg gtgtggccca ggtacccgac      2520
     ggagttgact ccgaacgagc acttggtctt cttcacgaac aggcgatgct ggcgcaggat      2580
     ggtgaggacg acgcggaggt ggcgaaggtg atcggcccaa gtattgctgt aaatcaatat      2640
     gtcatcgaag aagacaagta caaaccggcg gaggtgatcg cggaggacgt cgttcatgag      2700
     cgcctggaag gttgccgggg cgttgcacaa cccaaacggc atgaccagga actcatagag      2760
     gccgtcatgg gtgcggaacg ccgtcttgtg gatgtcctcc ggtcgcatcc gcacctggtg      2820
     gtaccccgac cgaaggtcga gcttggtgaa gaagcgcgcc ccatgaagct cgtccaggag      2880
     ctcgtcgacg acggggatgg ggaacgcgtc cttgacggtg agggcgttca gggcgcggta      2940
     gtcaacgcag aagcgccagg tgccgtcggc tttcttgacg aggaggaccg gcgatgagaa      3000
     cgcggagtcg ctgcggcgaa cgatgccctg gtggatcatg gcggcacatt gccgctccag      3060
     ctcgtccttg tgggccgccg ggtaccggta tggtcggacg gccaccggcg ccgcgtccgg      3120
     cttgaggact atgccgtgat cgcggccgcg ggggggtggt aggcccacgg gttcggcgaa      3180
     gacgtccgcg aacgacgcca gcagctcgtc gaggagggac gcgctggcca ccgtagagag      3240
     gagcgatggt gcagcagcag acgtcacccc ggtccagcgg aaggcgtgcc cgtggaggtg      3300
     gaacgccata gacggcgtgg cgaagtccca gactatctcg ccaagggtgg ccatccactg      3360
     ggtgcccagc accaaatcgt accctgcaag aggcattaca aacaagtcga tgtcgaagtt      3420
     ggtgccgtcg atgacgactg gcgcggcgcg gatgacgccc ggacacgcga cgcgctcgcc      3480
     gttggcgacg accgccgtga gccgcggtct ggactccacc ggaagcctcg tgcgtggcgc      3540
     ggcgctggca gagatgaagt tgtgggtcga cccactgtcg aggagggcga cgagtggcgc      3600
     accgccgatg gtgactgcga tctgcagcgt cccgccgcgc ggtacgccgg ccaccgcgtg      3660
     cagggagaag accggcgatt ccgtggtcgg ctcctcatga gcgtcggcgg cggcgtcgtc      3720
     gtcgagctcc accccggcaa tgtggaagat gcgccggcaa acacggttgt gcccccgggt      3780
     gtagctctcg ttgcagttgt agcagaggcc aaggcggcgg cgttccgcct gttcctcctt      3840
     ggtgaggcgc ttcgcctggc ggccctcgcc ctggttggtg accgccggtg tcttgtcagg      3900
     gtgcggcggg ggtgccggca gagccggacg cgcttgtggg gcgcccagga cgccgcggcc      3960
     cggagccttg gccggcgcgg tcgtgtattc ggccatgagc ttgaactgcc gtgccagact      4020
     catggcggac gccacggact gggggttctg catctggact tggaggctaa gcggtggcag      4080
     gagcccgccg gtgtagagct ggatcttctg ggcctcctcc agtttgcccg cgcggggcag      4140
     cagcgcctgc cactgcgacg agtactccgc gaccgtcccg gtccggcggc aggccgagag      4200
     ctcgaagagc ggagtcgagc ggagcggtgg cccgaaccgc agattgatga ggtccttgaa      4260
     gcatggccat gtcggagtgc cctcatcctc ctgaatttgc atgaaccaca gctgggcgtc      4320
     gtcgtggagg ttgtacgaag ccatccagac gcgctcctcc ggcataatcc gctgctgcaa      4380
     gaaaaaggat tcgcacttgt tgatgaaggt gagaggatca gtcttgccat cgtagcgcgg      4440
     catctccggg cgccaatgct tgggggggcg atctgggggt tgctcgccgg agtggtgccg      4500
     tgggccggag cctgaggatg atgcggtgat gttctcgatc gccttggcgt tggcctggat      4560
     agacgactgc atggcggcga cgttcttggt gagggcgtcg atcgcggcct tgaggtcgcc      4620
     gttgtcaccc atgtcaccgg agttggaggc gacggatgac gaggatgacg gggaaggtgg      4680
     actggtgttg gcagtgatgg gtggtggact agggttgatg ggtgcggggt cgggagacgc      4740
     gggtgcggcg gtggtaggga aaggcgcggc ggcggcggac gccgaggatc gacgagatcc      4800
     cgataccagg ttgtcaagcg cctgggcgct caacgacggc gggccgcgac tacgtaactc      4860
     gtagtcgcgc tccagtcctc acctgcgagg ttatacccct cagctagtgg cttaacagaa      4920
     taagagggag attagacgat aactttcatg ctttcctctc aaatgtttcg gtacaagagt      4980
     atatagccct ccggctaact aacttggaaa taaacgctaa caacttggaa acaaaccctc      5040
     ctagaatcaa ggctactccg atcctagcca ctgagcccgt ccttgccatc cacggtcatg      5100
     gtgatcgcgc tctgcgccgc gacacgcgct gcggctcgct ccgcagctct ccgcacatct      5160
     cgcgcccggc gacgccgtgt ataggccgtg ccccacatga ca                         5202
//
ID   CLOUD-5     repbase; DNA   ; ORY   ; 1611 BP.
XX
AC   .
XX
DT   13-SEP-2002 (Rel. 7.08, Created)
DT   13-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   Rice putative non-autonomous DNA transposon CLOUD-5.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; CLOUD-4;
KW   CLOUD-5.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1611
RA   Jiang N., Wessler R.S.;
RT   "CLOUD-5: a putative non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Repbase Reports 2(8), 13-13 (2002).
XX
CC   [1] (Consensus)
XX
CC   Related to CLOUD-4.
XX
SQ   Sequence 1611 BP; 411 A; 357 C; 459 G; 384 T; 0 other;
     tggaaaaaaa gagagggaaa tatatgacca gtacttaaac ttggactagg gtgtcattta        60
     ggtctatgaa cttataatgc acatccattt cctattttgg tttaatatat aatctgaggt       120
     tcaaagtaca agtgactcag gttgggtgct gacatggctg tccatagtga tgaaaatttt       180
     gtggacccct ctgctgtaca gtatgctccc aaatcaactc cgtccactac caaatagact       240
     aacatcgcgt gtgtgggaga ggaggcgaaa gacatggtga ttaaggtttc tgctatcatc       300
     ggcaatcaaa actctcctct aggggtggat gtcgagctgg cttgactcgg cttgttatcc       360
     taacgagtta aaaccctagc tcggctcggc tcggctcatc agcaagctca agctagctca       420
     cgagccaacg gaaaaggagg aaaggacccg cggcgcggcc acacagccag cggtgggcgt       480
     ctatgggcac aacggcacat ggaccacacg gaggagctcg actgcagagg acacaagctc       540
     gagctcgttg accaccatgg gaggagatcg acggcggagg agacaaggtc gagctcgctg       600
     gcgaccacgg ggtggagctc gacggtagag gcgacaagct agcacttcga ccacgtggat       660
     gagatgagct cgagctccat gaaacttgca ccagggagag gagcttgttg tcaggcagcg       720
     ccagacgggt gccgacacca ggcactgggg gtgatcagca tcgggcacta gggacaggcg       780
     gcgtcgggca caggcagact gcgctgagcg cttggtgacg ggcatgtggt ggcatggtgc       840
     caagcgctga gggcggccag ccgctcgagt ggactccgct ttggcggcat gggcggaggg       900
     cgagacagcg tgaggaaggg attgaggggc aggggcgtga gtagatcagt agagctaggg       960
     tttttatggg ccttctaaat aaatgagcca caagcagcta ggagaaaagg cagtcctgtg      1020
     agctggcttg ttatctctaa cgagctaaaa tgccagctca gctcgttaga aaaatgaaac      1080
     gagccgagcc gagctgagct gagcgagcta acgagtcacg atcttttggt tcacccctag      1140
     tctcctcagc ctagataaaa ggtgctatag gaagagggct atcccacaag tttgggtgag      1200
     gcattattgt tgccgtgact ctccagaaat ttgaggccca tcatcttccc ccttagagac      1260
     aatcacgttg cactaggctt gcgtgattat cctcttgtgg ccgattatta ccaccatcct      1320
     aatcactgtc tcttcgtctt gtctcccacg ggtgtggtgg cagtcgcttt gggagtggtc      1380
     agagtccatt tgagagtata tactatagcg aataagtcta aatacaaaat tctcattatt      1440
     gtggactatc acgtcagtat tcgggccgaa tcatttgtac tctagatctt gactgataca      1500
     ttaaaacaag attatgaatt tagatgtgca ttttataagt tgatggatct agatgatatc      1560
     ccaatggtct aagtttaaga accggtcgtg tattttactt gttttttttt a               1611
//
ID   MULEX_OS    repbase; DNA   ; ORY   ; 1797 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice non-autonomous DNA transposon MULEX_OS.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; MULEX_OS;
KW   target site duplication.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1797
RA   Jiang N., Feschotte C., Wessler R.S.;
RT   "MULEX_OS: a non-autonomous DNA transposon from Oryza sativa.";
RL   Repbase Reports 2(7), 32-32 (2002).
XX
CC   [1] (Consensus)
XX
CC   9bp target site duplications.
XX
SQ   Sequence 1797 BP; 436 A; 426 C; 435 G; 500 T; 0 other;
     ggaaaaaaat ttggtgcaga ccggctgcaa accaacgccg ctgtagcccc gacctagata        60
     gatgccgcgt ggataggcta tcgatctaac agcgagattc gctcggctcc aagcaagtga       120
     tatcggcgcg tccggctcga ttccctttcg gctcgctcga taagactgtc tcggctcgct       180
     catccacaat cccctccctc gtctgcccat ctctctcgtc tgccgccgcg ttcgcccgtc       240
     catctccctc actaaagacg gccggccggg ccagcaaggg tgagcacgag acacgcgttc       300
     ctctccacct ccctgtctcc tggccatggg cgccgtcggt gacggcagcg aatccagtga       360
     tggccgggtc ggcaatggtg agcatgaggc gcgttcttct ctcggcgatg gtggcgggcc       420
     cagaaaggtt ggtgtcggcg aacgtgagga agcgactgct ctatctgttc ctggtcactc       480
     tgcacgcgta cctagccgtc gaccaccatc aacacattgg tatagagagc tgtagttttg       540
     cagtgtcagt gtgtacaccc ccatccagcg tgtgtacatt tcatcagatt agtagttaaa       600
     tccatatatt gatttgcgag atcggagcaa cgagcacggc aaaccaggat gggtggtggc       660
     tgcacatgtt tacaagctta attaggtaga gatcagagcg tttttatgtt gtttgtgatg       720
     agcctaatgt tcagtacgta cgtctgaaat tcagaagatg gcatctaaat gttgttcaga       780
     gttttttcaa ttgtttccca taccttgaat tacataaaaa gtagacctcc atccattcca       840
     tgacaaaaat cctcattctc ttgtaggttc ttagcctgat ggagcaatgg cggttctcta       900
     tcttttgtga aaaatataga agagggaaat actctgcatg tcaccctgtg gttctctatg       960
     ttttgggcaa aatacagaag agagaaatgc tctgcctgaa aggactgtaa atgtggcaaa      1020
     agaggattgt agtttgttga ttatagactt tctttgtaat ctgtaaattg tagagtttgc      1080
     aaggatttat gctgcaagct gtaatctgca cttttttggt caatttgcaa ggtataaatg      1140
     tgcaatatat tctttaatct gaaatataca tggcatgttg ggtgttctga atcatgcaat      1200
     gtgatggatg tgttaaaaaa agtgattttt ctcttattca atacctttga aaaattcaat      1260
     atagaaaatt atgcaatctg aaatcatgaa ggtaaaatct gaaatgtgat gtctaaaaac      1320
     tgatccttct caaacgttgg taccaaattc attgtcacaa atgacagtgt aaataaaaat      1380
     aatcatttgc tgccatgcca tgtgctagtg caggcgaaaa tggctgatgt ccggtcacaa      1440
     gaaaccccgt ggctggatcc ttcccttgcc ctcctcttgc catggtggtt acgtcatcca      1500
     tgaagcttct gtcatggcgg cagcggttgc cggcgatttt ggccgcgatc tggcgagacg      1560
     tctctcttcg cgtccccgcg tgatctaggg tatcgaaata atatgttgat tcatctactc      1620
     gaacgcgccg agccaagcac gcccctttcc acggagtcga acgagccgag ccgccgaacg      1680
     tccactctgg gcatattcat ggcaagtgtt cgattagact tctgtccacg cggcatctat      1740
     ccaggttggg gctgcagcgc gttggtttgc agccggtctg caccaaattt tttttcc         1797
//
ID   RBTVL_I     repbase; DNA   ; ORY   ; 5949 BP.
XX
AC   AE017121;
XX
DT   04-AUG-2005 (Rel. 10.07, Created)
DT   24-AUG-2005 (Rel. 10.07, Last updated, Version 3)
XX
DE   Rice tungro bacilliform virus like repeat (internal portion).
XX
KW   LTR Retrotransposon; Interspersed Repeat; RBTVL_LTR;
KW   caulimoviriadae; endogenous badnavirus; LTR;
KW   reverse transcriptase; RBTVL_I.
XX
OS   Oryza sativa (japonica cultivar-group)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
XX
RN   [1]
RP   1-5949
RA   Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y., Sano Y.;
RT   "Reconstruction of putative DNA virus from endogenous rice tungro
RT   bacilliform virus-like sequences in the rice genome: implications
RT   for integration and evolution.";
RL   BMC Genomics 5(1), 80-80 (2004).
XX
RN   [2]
RP   1-5949
RA   Jurka J.;
RT   "A recent copy of LTR-retrotransposon related to Rice tungro
RT   bacilliform virus.";
RL   Direct Submission to Repbase Update (04-AUG-2005).
XX
DR   Genbank; AE017121; Positions  209328  203380.
XX
CC   LTRs are 99% identical. Present in multiple copies in the rice
CC   genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           503..5788
FT                 /product="RBTVL_I_1p"
FT                 /translation="MDISRSLFRRIASRDDNCSDKQKGKYDDIDELKDVAQ
FT                 VDKQLERYQRDTLRAIRPQQVYCMGFFENKNGLYRISREVELSVLTKPVEL
FT                 KIVAKEFENSLKYSGYKYIHQGMYIIGIKGMTRKKLGAKVLITLLDKRWDT
FT                 INKASLGYLEGDMNENMLITYIAPDLMMPVNEFIDKMSFGFQTKGYEEFKG
FT                 TNLLISIEFIGRLTNRSASKYKINVNDVIEKMHSKGIKFMSPLIIDSEERA
FT                 GEKWPISEFIKNKTLSQPENFISYQDSKGNVSIRFTNYKTRASDDLDAESS
FT                 DRDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEYNNSMKSEWPKIR
FT                 DKELYFYRELSRIKKQKKEKSLVIEIPRTQEIKIEQIKSEEPREEIQKLDK
FT                 VLSEEEQWEVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEE
FT                 GLHNLDNAMEAMEVDLGTGKRKRYGEGSVKNEGERERPARAAGRWPPEKEE
FT                 YSYHYIPGQYRHMGTKRRDFEKPIKFQNQKSDGAILNLAAHDPIDWPNIIS
FT                 IWKGLIVQKYIQNQHNIGNKVEDMITYLETFLGESAKVLWEQWVEKNPNNY
FT                 EELKRAGSNPHNFENIVSNIIIAEDPELGYTTLQNERLKEIEKLTLTSWKG
FT                 IKEFSQHYLYNATTAKQGYNKGIVERYFNKLPDPLGSMIFEEYKKETEGAE
FT                 INISQAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIIQIPLSYGEDRPR
FT                 NKRNHRYQSRNSNNIKTKKRYFLRRSDNRAPFLHKRNVRRYNPKKTYDKTC
FT                 RCFICNSPDHLSRTCPNKDQKRYSSTYEEQERVLIIDSVNENILVCDDEIK
FT                 DDESIYSIIETDEIENTNEEYESTDEELDLIDELAGLKIELMDQLNCEHDW
FT                 IRGKGDYNIKCAFCIYYPSQDNRVTCSICLKQACAECIKANKQKWRKEIEL
FT                 ESDERILSSRVRVLENRINKLEVELENLKINYDIKALPENKDIQNTEFKEQ
FT                 VITLKDSNTAKIIQLKDAITNFGNKYIVKLPFKEILGIRIPVKVKLSPKVS
FT                 YKILALVDTGCTKNIIHDKYFIKCPEIVHTIDDNKAEVSTDMSGIKKIHNQ
FT                 LAHNVEVYINGTKYIIDEITIRNLSMISDDMIIGLRFLQQSVQTTVIHEQG
FT                 ITFIPYQNNVPYISEVRKRGGARIKPDNLEALNLESEERINEYELSENIDN
FT                 YSFSSYLPKSMELPGKTSWEDRYLLKATKDFEYICREMASQKSEWLTNMSS
FT                 WRLPQLPRGHGERFNHNFRITELQQGLLNLLWQTKNKKEKAHALNGLAYYF
FT                 KNFVPSDQKITEKRAKIQDIPHHEERLLDYREEKSRDGQDKLPMEVEQSMA
FT                 TDKNTKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTI
FT                 PQTPYILHNHPNLFLPQYILRTQPKAPCRSCAYKDSCKKKLKSQNPMSTTY
FT                 ENLQPRLSFKTEQTLSCFGQDILDLVWQKFKERQMKIFLGLQDYFFDLLEG
FT                 RERNPAIRVIIYMLPLLRLDDQAISDPSYRFLVLKAEINLQRFRNLPTYNH
FT                 EEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYRIIFSS
FT                 IPPKFTPPVRPAIHYIYIMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWR
FT                 LFSEAAEIEEAITTDYEYQLVFQNKITRIFISKFYNQSYEYFKGAGRIIKP
FT                 DFGNECSKKSYYRSLAQWFQKTEPSEIDTVQSAPMIINEDNE"
XX
SQ   Sequence 5949 BP; 2476 A; 867 C; 1070 G; 1536 T; 0 other;
     taggtttgtc tgaagcatag gtgtggtgta tattgtctga agcataagtg tggtatcaga        60
     gcctggtaat catagagaag ctaaatttag aagctaatat tggaaagtta ataaatacca       120
     aagataatat cgacataagg tgtagactaa gccatactga agaacatagt tggcactcta       180
     ataatagcca actaaattta attgtagatt taatatataa tttctatata aattggagta       240
     agagacaaga agatttagag caaaagttag aagatatata taaagaacaa aagcaatttg       300
     tagaacaata ttcttttctt aataataagc taaatactac attagaatta ttagaagatt       360
     ataagataag gcaaaataaa atttcacaga atagtgatta tattaaagaa ttactagaca       420
     aaatcaactc tagtaaaggt aaggaaatag ttttggcttc atctggcata gtctcatctt       480
     cacaagccat taattctgaa aaatggacat atctaggagt ctctttagaa gaatagcaag       540
     cagagatgat aactgttctg ataaacaaaa aggcaaatat gatgacatag atgagctgaa       600
     agatgttgca caagtagata agcagctcga aagatatcaa cgagatactt taagggcaat       660
     aaggcctcaa caagtatact gcatgggatt ttttgagaat aagaatgggc tttatagaat       720
     atctagagaa gtagaattaa gtgttctaac aaagccagta gaattaaaaa tagtagctaa       780
     agaatttgaa aatagtttaa aatattcagg atataagtat attcaccaag gtatgtacat       840
     aataggaatc aaaggaatga caagaaagaa attaggagct aaagtgctaa taaccttatt       900
     agataaaaga tgggacacaa taaacaaagc atctttaggc tatctagaag gagatatgaa       960
     tgaaaatatg ttgataacct atatagcgcc tgatttaatg atgcctgtaa atgaattcat      1020
     agataaaatg agttttggtt tccaaacaaa aggatacgaa gagtttaagg gaacaaattt      1080
     attaataagt atagaattta taggaagatt gactaataga agtgcctcca aatacaaaat      1140
     caatgtaaat gatgtgatag aaaaaatgca ttctaaagga ataaaattca tgagcccttt      1200
     aataatagac tctgaagaaa gagcaggaga aaaatggcca attagtgaat ttataaaaaa      1260
     taaaaccttg agtcagcctg aaaacttcat aagttaccaa gacagcaaag ggaatgttag      1320
     tattagattt acaaattata aaaccagagc ttcggatgat ttggatgcag aatcatctga      1380
     cagagatatt atagataaca gaagacatag tatatctgaa ttgatggaaa aattagacca      1440
     tgaaagtgaa ataaaatatt atgaagataa attaagagat atagcagatg aatataataa      1500
     ctctatgaaa agtgagtggc ctaaaattag agacaaggaa ctttatttct atagagaact      1560
     atccaggatt aagaaacaaa aaaaagagaa aagcttggtc atagaaatcc ccagaaccca      1620
     ggaaattaaa atagaacaaa taaagtcaga agaaccaaga gaagaaatcc aaaagttaga      1680
     taaggtatta agtgaggaag agcaatggga agtaaatgag aaattattac tagagagtta      1740
     tgaagaagaa aacaacctga tagaggaaat agagaatata gaagaagaag ataatgcaga      1800
     acaatataat gattttatag actcattgga tgaggaaggt ttgcataatc tagataatgc      1860
     aatggaagct atggaagtag atttgggaac aggaaaaagg aaaagatacg gagagggttc      1920
     tgtaaaaaat gaaggagaaa gagaaagacc agccagggca gcaggaagat ggcctccaga      1980
     aaaagaagaa tattcatatc attatatccc aggacagtat aggcacatgg gcactaaaag      2040
     aagagatttt gagaaaccaa taaaatttca aaatcaaaaa agtgatgggg ctatactaaa      2100
     tctagcagca catgatccca tagactggcc aaatatcatt agtatttgga aggggttaat      2160
     agttcaaaaa tacatacaaa atcagcataa tatagggaat aaggtggagg atatgataac      2220
     ttatttagaa acatttttgg gtgaatctgc taaagtccta tgggaacaat gggttgaaaa      2280
     gaatcctaat aactatgaag agctaaaaag agcaggaagt aatcctcaca actttgaaaa      2340
     tatagtatct aatattatca tagctgaaga cccagaatta ggatatacaa ccctgcaaaa      2400
     tgaaagatta aaagaaatag aaaaattaac tttaacaagc tggaaaggta taaaggaatt      2460
     ttctcaacat tatctatata atgcaacaac tgctaagcaa ggatacaata agggaatagt      2520
     tgagcgatat tttaataaac tacctgaccc attaggtagt atgatttttg aggaatataa      2580
     aaaggaaact gaaggagctg aaattaatat ttcccaagcc ataaccttcg tgttcaaaca      2640
     attaagaaaa atatgcacag gaatacaagc ccaaaggtca atgaaacatt ctgattataa      2700
     tttttgcaat aaaataatac aaataccttt atcatatgga gaagataggc ctagaaataa      2760
     aagaaaccat agatatcaaa gtagaaatag caataatata aagacaaaga aaaggtactt      2820
     cttaagaaga tcagataata gagcaccttt cttacataaa cgaaatgtaa gaagatataa      2880
     cccaaagaaa acttatgata agacatgcag atgtttcata tgtaattcac cagatcattt      2940
     aagtagaact tgcccaaata aagatcaaaa aagatattct agtacatatg aagaacaaga      3000
     gagagtttta attatagata gcgtaaatga aaatatatta gtatgtgatg atgaaataaa      3060
     agatgacgaa tcaatatatt ctatcataga aacagatgaa attgaaaaca ccaatgaaga      3120
     gtatgaatca accgatgaag agttagattt aattgacgaa ctagccggtt taaaaataga      3180
     attgatggat cagttaaatt gtgaacatga ttggattaga ggaaaaggag attataacat      3240
     taaatgtgct ttttgcatct attacccaag ccaagataat agagtaacct gtagtatatg      3300
     cttaaaacaa gcttgtgctg aatgtataaa agcaaataaa caaaaatgga gaaaagagat      3360
     agaattagaa tcagatgaaa ggatattatc tagtagagta cgagttttag aaaacagaat      3420
     aaataaacta gaagtggaac tagagaatct aaaaattaac tatgatatta aggcattacc      3480
     agaaaataag gatatacaaa ataccgaatt taaagagcaa gtgataacat taaaagacag      3540
     taatactgct aaaataattc aactaaaaga tgccataact aattttggaa ataaatatat      3600
     agtaaaactg cctttcaaag aaattttggg aataagaata ccggtaaaag taaaactatc      3660
     acccaaggta tcatataaaa ttctagcact agtagacact gggtgtacaa aaaatattat      3720
     tcatgataag tacttcataa aatgtccaga aatagttcat acaattgatg ataataaggc      3780
     agaagtctct acagacatgt ccggaataaa gaaaattcat aatcagctag ctcataatgt      3840
     tgaagtatac attaatggaa ctaaatatat aatagatgag attacaataa gaaacttatc      3900
     catgataagt gatgacatga taattggcct aaggttttta caacaatcgg tacaaaccac      3960
     agtaatacat gagcaaggaa ttacttttat cccatatcaa aacaatgtgc catatatctc      4020
     agaggtacga aagcgtggtg gagccagaat caaacccgac aaccttgaag cacttaatct      4080
     tgagtctgaa gaaagaatta atgaatatga gcttagtgag aatatagaca actattcttt      4140
     ctcatcatat cttccaaaat ctatggaatt gccaggtaag acatcatggg aagatagata      4200
     tttattaaaa gctactaaag attttgaata tatatgcagg gaaatggctt cacagaagtc      4260
     tgaatggctc acaaatatga gttcatggag actgccccaa ctgcctagag gccatggaga      4320
     acgatttaat cacaatttca gaataacaga gctacaacaa gggttattaa acctcttgtg      4380
     gcaaacaaaa aacaaaaaag aaaaagctca tgccttaaat ggcctggcat attatttcaa      4440
     aaatttcgtg ccctcagatc aaaagataac agaaaaaagg gctaaaatac aagatatccc      4500
     tcatcatgag gaaaggttac tagattatcg cgaggagaaa tcccgtgatg gccaagataa      4560
     acttcccatg gaagttgaac aatctatggc aacagataag aataccaagg tattctcaga      4620
     taagattttg atctcagcag atcctgcttc gagcatggtt gctttccaca taaatatcaa      4680
     taacctattg caatcttttc cacataataa accatcatca tccacaaaaa ggcatgatac      4740
     cattccccaa acaccataca tactgcataa tcatcctaat ttattccttc cacaatatat      4800
     actccggacc cagccaaaag caccatgtag atcttgtgcc tacaaagatt cttgcaaaaa      4860
     gaaacttaaa agccaaaatc ccatgagtac tacatacgaa aatctccaac ccagattaag      4920
     cttcaaaacg gaacaaactt tatcctgctt tgggcaagac atcctcgatc ttgtttggca      4980
     aaagtttaag gagagacaaa tgaaaatatt ccttggactc caagattatt tctttgatct      5040
     cttagaaggg agagaaagaa acccagccat acgagtaatc atatatatgc tccctctctt      5100
     aagactagat gatcaggcaa tttctgaccc atcctataga ttcctggttc tcaaagctga      5160
     gataaatctt caaagattcc ggaacctacc cacatacaac catgaagaaa tatctctcca      5220
     aaccattata gatcatggtc ttgtgaattc catatatgca accctcgatc agatccttca      5280
     atctgattta ggaaacgctg tgaaagatgt atgcaggaga cttggacatg gaagatacag      5340
     gattatcttc tcctcaatac caccaaaatt cacaccacct gttcgtccag caattcatta      5400
     tatatatatc atgaagggac aatttaattt tcaagaagac ggtcctagca aactatcgga      5460
     tgaagaggaa gaaatatata caacagttgc taatcatgaa aattggagat tattttctga      5520
     agctgcagaa attgaagaag ctatcaccac agattatgaa tatcagctgg ttttccaaaa      5580
     caagatcaca aggattttta tcagcaaatt ctacaaccaa agttatgaat acttcaaggg      5640
     agcagggcgc ataattaaac cggattttgg aaatgaatgc tccaagaaaa gttactacag      5700
     aagcctggct cagtggtttc agaaaacaga gccatcagag attgacacgg tgcaatcagc      5760
     accaatgata atcaacgaag ataatgaata aagatcttgt catccccgac aaagatcact      5820
     attcaagata aggaatctac actattccag ataagtatgg atcttggtgg tcatgggcag      5880
     ccagatgaat agaattcttt aagctaaata tgtttttcaa tatatattga taatagaata      5940
     tcaataatt                                                              5949
//
ID   SZ-60       repbase; DNA   ; ORY   ; 6462 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice retrotransposon SZ-60.
XX
KW   LTR retrotransposon; SZ-60.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-6462
RA   Jiang N., Wessler R.S.;
RT   "SZ-60: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 115-115 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-60 has 236bp LTRs.
XX
SQ   Sequence 6462 BP; 1941 A; 1552 C; 1333 G; 1636 T; 0 other;
     ataggtggga ttagtttttc cgtttctatt ttcataatct tcttagtaca gctcttggag        60
     aatttatccc ctcgtatgcc agctaacact ggccccacac atcacatggc actcacacct       120
     actcctttta caaagtacgc tttctcttcc gtatcgcgcc tttacacttt acgccttccc       180
     ctgttcctct tctgttgtcg ccaccgttgt gtccatcaga gtgtctggcg tgacatttgc       240
     cccccccccc ctcccccctc cgagcaggag cttgtcccca agcgattggc tcaggaaacc       300
     tggcacggac cacttcataa tcttcccatg tagcccactc tggtgccaga gagccccaac       360
     gaacaagctc ttgaaccacc aaggcattac ctttttttga acatacggcg atccaaaatt       420
     gcagagggaa ccaattcagt aatgtccagc tgcaatggag agggcaacga agaaaagaca       480
     ggcttggcat cagggacaaa ttgtttgagc tgctactcat ggaacactgg atgaaaccca       540
     ctgtgatcag gaagttgcaa tcgatatgcc acagaaccaa tcttatccac aattgggaaa       600
     ggaccaaagt acttaaacac cagcttagga aaaggttgag aaacaacaga cttctgggca       660
     tacggttgaa gtttcaggag aaccagatca ccaatctgaa atgagcgacg agtacgcttc       720
     agatcagctg tttttttcat cctattttga gcacaggtga gatgatgctt cagcaaagaa       780
     gaaaacatag cacgttctct gagcaaagca tcagctacag gagaatcaga gtcagtagat       840
     gcaaaggcat taactgacat ggcagcagtg gcggatccag aaaatcgatt agttggtatc       900
     gtaacgtgtc tatcaatgtc atagtatgct aattatgctt agatcatagt gttataacat       960
     atagataagt cgttttgcta tagattttgc cgaaagtcgt cggtgtcgcg tgacactagc      1020
     cttagtactg tagatccgcc cctacatggc aggaagaaga ccatacgaag gatcagtgcc      1080
     aacagtgatt tttaaggaga gcattgtaag gcaaagtggt aatttgtatt ataccaaaac      1140
     tgtgctaaag ggagccaagc acaccactaa tgtggggaag aggagaccgc acacctcaaa      1200
     gacatctaca ggcattgttt aacacgttcg gtatggccat cagactatgg atggtatgca      1260
     gtagagagat gtaatggcac ttcaaacctc ttaaacaaag tctgcccaga aattacttgt      1320
     aaacacctta tcgcgatctg aaacaatgga cttgggcata ccatagagag aagccatatt      1380
     gttcagaaat aactcagcca cctacaaagc tgaaaaggga tgtttaagag gcagaaaatg      1440
     agcaaattta gtgtatctgt caaccaccac caagataaca ctgctcccct tagaagtggg      1500
     caaaccctcc acaaagtcca ttgagatatc tagccatgca ccagatggaa ttgttaatgg      1560
     ttgcagcaac ccaagataag aacagtgctc atgtttagct tgctgacaca ctgcacattg      1620
     ctagacaaat tcttccatgg atttctttaa acccttccac acaaacaatt tcttcactcg      1680
     ctggtatgta gcttgaatcc cacagtgacg tcctattgca aaagagtgga aggctgcaat      1740
     tagtttggtc tgcaaagcag aattaactcc aatccagatt ttatcagctt tccttatcaa      1800
     cccatgcgac aaggtaaaac cttgagaatt aggagaggta atggccaatt attgcaataa      1860
     ttatttagca aaaagatcta ccacatatga attagggacc tcctgaaccc aagcaggttg      1920
     aacaactgaa ataggaaaaa gatgccccac tctagagaaa gcatcagcag acttattatc      1980
     cacccccgac caatcagttt agtcatggcc ttcttctgca aatctgtact gcgagtcgcc      2040
     cccattacta gttcggcgtg ctgtcagtat ctaaactctg atcatccaaa tgataaaggg      2100
     ctttatgatc agttttaata acaaaaggac tagtgagtaa ataagatctt tacttatcca      2160
     caaccattat aatagccaaa aattccttct cataaattta taatttctga ttagcaatgc      2220
     ccaatgcttt cctgtaaaag ccacaggatg cccttcttga gatagcacag ctccaatgcc      2280
     agtagcacaa gcatcgattt ccagaacaaa aggtttggaa aagtcaggga gagtaaggac      2340
     aggtgtagta cacatagcag tttttagagc tgcaaaagct tcctgagctt gaggagtcca      2400
     tacaaactta gtgttcttct gaagcaacat ggtgagaggt ttagccaaaa tgccatagtg      2460
     ttgcacaaac tttctataat acccagtgag acaaaaaacc atcttagttc agtgacatta      2520
     gtaggaatag gccaagaagc catagcttga gttttctcag gatctgtggc tacaccttca      2580
     gcaaagataa tgtggcccat gtattccaat tgagaagtgg caaatgaaca cttggacaac      2640
     ttagcacata actgatgctg ctcgcacatt tagctagcaa tctagaactc gaacttgggt      2700
     gtccaacttg gaaaactata aaaaattagg attcagagac tcgtctaata tatgaaattt      2760
     attcattaca aaataggaaa attgatttga tcaagtagaa ggatcattga gggctagtat      2820
     gaaaataaat atgaaactta gggcttatat ggaagaaatc aactaaatga agaagttctc      2880
     gtaatattta caaagtccag gggctaaaat agaagatgat aggagatatt tatccaccca      2940
     tcccattgat ggaagaggat ccccattgac cctatctcgt tcccatcgct atctccactc      3000
     tccagtcgat ccagcgcgtc tccaccgccg atccagagtc tccaccgccg gcgctccaga      3060
     tccgcctctt cctctgctcc ggctgctcca cctcttccca tgcacgcctg ccgttgctgc      3120
     tgggtggatt cggggacgct gacagcctac gaatgccggt ggccggggat gacaatgacg      3180
     acgactgcgc tgtccctggt cagctgtttc aaaacccctt ccgctgctcc ttgctatcga      3240
     tctcccatct actttggact ctcctagccg cgtcgacgcg gggattgggg agccaggagt      3300
     agccgaccag ctctagggtt agggatttag ggttattatt gggctgagaa aatgggccaa      3360
     agaaaaataa ctggggccag ccggccagat gtttataaaa aggataattt accggaatat      3420
     ataaacggta attactggta taatacggta accacacaaa acggttggta aattaccaaa      3480
     ctatttccga tattgtttcc gtatttttta ccgtttccgt tttcgattac gatatttacc      3540
     gtttccggaa cgtccgattg gtcaaattcg aaaaaggtag cccggtcggc cggtaattac      3600
     cgctactgtt ttcatccctg gtaacaacta caacaccagc tctaagtggt gaccatgctc      3660
     ctccaaagat ttgttgcata tcaatatgtc atccatgaac actaaaacaa attttctcaa      3720
     gaagggagca aagatagaat tcatgagaca ctgaaaggtt gcaggggcat tagttaaccc      3780
     aaatggcatc accctgaatt ggacatgacc atgatgggtt ttgaaagcag ttttatactc      3840
     atcagcctcc aactttctaa tctagtgata tccactttta agatcaagtt tggagaaaaa      3900
     cttagtacta gctagctcat ccaaaagttc ctccactatg ggcaaaggaa tttgttctta      3960
     attgttaaag aactcaacct gcggtattcc acacaaaatc tccagctgtt gtccttcttt      4020
     ttaaccagcg acacaggaga tgcaaaaggg ctacaactgg gagtaatgag tccaccggtc      4080
     aacatttcga aaacttgttt ctcaatctca cctttctgag caggagaata tctgtaaggt      4140
     catgaattaa ctggcacaga attaggtaac aaggtaattg aatgattcag caccctatca      4200
     gggggcaggg tactatactg ctgcagtagc tgctgtatag caggatattc agaagaagaa      4260
     ctagacattg cagcaacagg ttcaagcata gccatagccc atatatcatt accctgatcc      4320
     catttaacca cctgagttgc tgagacttca gttacttcaa ttacaatagg agaggcaact      4380
     ccttgcaaaa taatttcagc cccctgatag gaaaactgaa ttgtctttgc agcctagtca      4440
     cagggtcata ggactatatt gtgttaacca atccatgcct agcaccacat catatcctcc      4500
     catgggtaga agacgcatag taaaagagaa atgatatccc tgcacccacc aagtaaattg      4560
     gggaatcttg gcatcacaag acagtacctc tccattggcc actttaactg aaataggtag      4620
     agttgcagta gtaggaagct gtaacttggc acacaaatca gaattcacaa agctgtggga      4680
     actcccagaa tccacaaaaa tcagaataac ctgattaccc accagcgctc tcagctgaac      4740
     agtagccgaa gaacaggtac cagctagagc atgcaaggag agattaaaat cctcttctac      4800
     caattcagga gcagtgagca tccaaaatat catcaaacaa gatcactggc tcttcctgca      4860
     cagcaacttt aactcagcct cttgtttgac acagacttga ccagaaacat acttatcacc      4920
     acatttgaaa cacagaccct gagcccttct atattccttc agctgctgtg ctttccacaa      4980
     ctcaccacga gccaacttag gtttctcatt gcctctacca acagcattat ctcggcattg      5040
     attaaacctc ttccttggtt gtccaatatg agcaccctcc tgagccaaag caacaagaca      5100
     atcctgggta acagtagtag gctgagctgc ctgaacgaaa gacctcaagt catccttcag      5160
     tcccaacata aagtgagaaa ccaaaacaga accacacaag agcgggtcat acagacgaat      5220
     ctgataaaca agttcactga attttgaaca atattctatc actgtgctag tatgtttgag      5280
     taacagtaac tcatccattt tcacagacct aaggtgcaca tcaaattccc tagaaatagc      5340
     agttttcaac atctcccaat catgccaacc cacttctaac ttccatgtct gataccaatt      5400
     tgcggcatca cccatgagat tcatagatgt tgctgaaact agaaatgctt ccatgatttg      5460
     atagaaagca aaataagtct cacaattatc aatccacacc ttaaccccat ttccatcaaa      5520
     cttcggaaaa tccattttag gagtccactg acgatgaccc atgtcacaat gctcacaatc      5580
     acccggagag taatgaggtg aaggtaccca atggaggagg tggtggtggt tgtggttcag      5640
     acgaggttga agccacagaa cccgaataag gagtcgacaa caatggcgct tgatgtggtg      5700
     tttctggcgg caacggtggc ggtggtgatg gtgccacaat gatcgccttc agagcccgtt      5760
     cgacccaagt ttgctcttgc tgcacctggt caagggaggt caaggagaga tccaccttgg      5820
     tttttacccg acccaaccgc tcgccctgct gctcgagctt gaggtcaatc tacatcaagt      5880
     gcgtggcgat gtcgtccttg gcagccattg cattcatggc atccaacaag cgctcctcca      5940
     tggatttcat cgctgcgatc gtctgccgaa cctgcaaact tggtttggct ggcgccgtgc      6000
     cgtcgtcttc tccaaacccg atcaacctag ccttgattta ccgcaaatca acctgaagga      6060
     agaccacgaa cgaaacaccg gatttactga tcaagagtcg agagagtgcg agagatagcc      6120
     cgggatcgaa aagcgaccga taccaacttg gcatggccct aatcacggcg acggagctcg      6180
     ccggagttgg gggaatagca aaggaagaac agaggaagga gaaggataca gagtaggtgg      6240
     gattagtttt tccatttcta ttttcataat cttctcagta caactcatgg agaatttatc      6300
     ccctcacacg ccagctaaca ctggccccac acacgacatg gcactcacac ctactccttt      6360
     tacaaagtac gctttctctt tcgtatcacg cctttacact ttacgccttc ccctgttgct      6420
     cttctgttgt cgccgccaat gtgtccgtca gagtatctag cg                         6462
//
ID   RIRE3_I     repbase; DNA   ; ORY   ; 5775 BP.
XX
AC   AB014738;
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   10-JUL-2002 (Rel. 7.06, Last updated, Version 2)
XX
DE   Internal portion of the gypsy-type retrotransposon RIRE3.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   endogenous retrovirus; GYPSY superfamily; Met tRNA as PBS;
KW   RIRE3_I; RIRE3_LTR; gag; pol.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5775
RA   Ohtsubo E.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (22-MAY-1998). Eiichi
RL   Ohtsubo, The University of Tokyo, Institute of Molecular and
RL   Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-0032,
RL   Japan (E-mail:eohtsubo@ims.u-tokyo.ac.jp, Tel:+81-3-5684-3269,
RL   Fax:+81-3-5684-3269).
XX
DR   GenBank; AB014738; Positions       1    5775.
XX
CC   CDS 184..993
CC   /product="gag-like protein"
CC   CDS 1241..5773
CC   /product="pol protein".
XX
SQ   Sequence 5775 BP; 1402 A; 1522 C; 1524 G; 1327 T; 0 other;
     gttggtatca gagccccctt gaccctagga cgagctgtag atccgaagcc ttagcagtat        60
     tttcgaaata aaaatccttt gttatttgtg aaaaccctct agtctctctc tgtcttgctg       120
     cttcatttat cgtcaaaatc tgacctttaa aatgttgttt ttcttttttg tttttgtttg       180
     tagatggccg gcagcgtcac ccgtcgtggt ttggacatga ctggcttcgt cttggagctg       240
     cggggcatgt gcgttgtcct ggggtatcca catggagtgg actaccaggc caggccgctt       300
     ccggagcagg agggtgacga tgcagagccc cacgctgctt gggaggtcac tgcagtgatc       360
     ctctctggct ctcccgagcg gacttcgctg gcagtcaccg cgggtgggga ttccttcccc       420
     gccgcttgcc agagcgccgc tctcctcgcc atcggcaccc ttcactagcg ctacccggac       480
     gagttgcagc actcgcccta ccgctaccac catcgccgcg gaggagcccg cgactacgcc       540
     accttccggg atgctagctc ggaagatgac gttaccatcg tgcacctggc gcgcatggtg       600
     gaggcgtatg acgcggctcg tatcgacttc catcaaatgg tgcgccgtgg gatggttgaa       660
     aacaacttga aaatcctgga gctgcgtcag gagaacctgc agctcaagaa ggacttaaac       720
     gcggtggagg cgcagctgca tcagctcaag atcgcccagg gagaggacag ccgtcccaag       780
     cgtcgccgcg tcttccgcag ccagaagatc accgcccgca agagcacctc caggcccgag       840
     cttgttcgtc agtccctggc gtggacctgc ttcgtcgaga cccctcgtgc cgagcccgcg       900
     cccgtggttc cccaggaggg ggaagcatcc ggcgttggta gcacggagga tgcgctgttg       960
     ctcaccttcc gtcctggccc gtcgcagcag tagacgagca gttagtaggc tcgcgcgtgt      1020
     gttctttctc gtttatcttc ttgttgagtc gtgtggggca tggttatgcc ggtgtgtggt      1080
     ataactgtgt cggagcctgt cttattttat ttgcctaagc aacttgaact ctaatgaacc      1140
     aatttaatag cagtaataaa ttcaagaatt atggtagtcg tgggtggtta gttttaatag      1200
     ttagctcttt ctgtttgctg gatccgtgtg gggtttacag atggtgacaa ccaggagaac      1260
     tgctaatacc ggtgatggca accaacccga aggcagcaac atcaacaacc atggcagccc      1320
     acctccacct ccgcctcctc caccaccccc agacaccaac gccattctca ctcaaatcct      1380
     cgcccagcaa gccaacatga tggctgcttt cctccaccac atccaaaatc caccacggca      1440
     taatgctcca cctccaccac cacccccgca acactctgag ctcgccgagt tccttcgcat      1500
     tcgcccgcct accttctcca gctccaataa ccccgtggat gccttggatt ggttgcatgc      1560
     agtggggaag aagttagaca ctgtgcagtg caacgataag gagaaagtca tctttgccac      1620
     ccaccagctg caggggcccg catctctatg gtgggactac ttccaggcta cgcagcccga      1680
     ggggcagcct atcacctggg cccgtttcac cgccgctttc cggagaaccc atgtgcccgc      1740
     cggagtcgtg gctcttaaga agagggagtt ccgagagttg aagcaaggca accgctccgt      1800
     gatggagtat ttgcacgagt tcaacaatct ggcccggtac gctccggagg atgtgcggga      1860
     agatgaggag aagcaagaga agttcttggc gggaatggac cctgagctgt ccgttggtct      1920
     agtctctggg gactatccgg atttccaacg tctggtggac aagagcatcc gcttggaagc      1980
     caagcacaag gagctggagt cgcacaagcg ccgcttggcg aacttccgca atcagcaggg      2040
     tgctaaccag agggtccgct acaccaatcc ctatccaggg ggatcctcct cgcagcagca      2100
     acaacaacag cagcagcaat cccgccctgc gcctcgacct caattcgtgg tgcgcgtccc      2160
     acagccgcag cagcagcaga atcagcaagg gactcgtgcg ccccgtcctc ctacgccagc      2220
     tgtgcagccc gttcaaggcc gcagggacgc ttcaggtccg cagcgtctgt gcttcaactg      2280
     cttcgagccc gggcactttg cggataaatg cccgaagccg aggcggcagc aaggccaagc      2340
     gcctccccgc cccaacaacg gcgggaagga tgtcattcgg ggccgtgtga atcacgtgac      2400
     ggccgaggac gtgctgacaa ctccagactt catcgttggt acgttcctcg ttcattccat      2460
     ccctgctacc attttgttcg actctggagc ttcccactcg ttcatatcta tgccattcgt      2520
     ggggaaaaac cagttggggg tagaaaggct tagaaaccct ctgctcatca ccacccctgg      2580
     aggggttatg acagcaaagt attatagtcc tgccgtccct atagaaatcc aggggattcc      2640
     ttttccctcg gatctgattc tgctagacac caagaacttg gatgtgatcc ttgggatgaa      2700
     ttggttggct caattccaag gagtagtgga ttgcgcgaga cgcactgtca ctctgtaccg      2760
     agggccggaa caaccggttg ttttctttgc acccccaacc tctgtcagaa gttcagaact      2820
     gcattagata ggactgtcag aaatccccat tgtcagagag ttcggagacg tgtttccgga      2880
     agaactacct ggtatgccgc cccagcgaga gattgagttc cggatagatc ttgctccagg      2940
     aaccactcct ctgtacaagc gaccctaccg tatggcagca aatgaactgg ccgaagtcaa      3000
     gaaacagttg gaagagttga aagaaaaggg gtatatacgt ccgagtactt ccccatgggg      3060
     tgctcctgtg atttttgtag agaagaaaga caagacgaag aggatgtgcg ttgactacag      3120
     agctctcaat gaagtcacta tcaaaaacaa gtaccctctt ccccggatcg atgatctgtt      3180
     cgatcagctt aaaggtgcca ctgtattctc caagattgat cttcgttccg gatatcacca      3240
     gttgcgcatc cgggaagaag atattccgaa gaccgcattc accacgcgat acgggctgta      3300
     tgaattcacg gtgatgtcgt tcggtctaac caatgctcct gcatttttca tgaacttgat      3360
     gaacaaagtg ttcatggaat acttggataa gttcgttgtg gttttcatcg atgacattct      3420
     gatatactca caatcagagg aagaccatca gcaccatctc cgtctggtgt tgggaaagtt      3480
     gcgggaacat caattgtatg ccaaacttag caagtgtgag ttctggttgt ccgaagtcaa      3540
     attcttaggg cacgtgatat ctgctaaagg agttgcggtg gaccccgaaa cagtgaccgc      3600
     cgtcactgat tggaagcaac ccaagacagt cactcaagtc cgcagtttct taggtttggc      3660
     aggatactac cgaagttgta tcgagaactt ctccaaaatc gctcgaccca tgacacagtt      3720
     gttgaagaaa gaagagaaat ttgtgtggag cccgcaatgc gagaaggcgt tcaaaaccct      3780
     caaagaaaag ctggtttcct cgccagtgtt aatcttgccg gatactcgca aggatttcat      3840
     ggtgtattgt gacgcttcgc gccaaggatt ggggtgcgtg ctcatgcagg atggtcatgt      3900
     ggtggcctat gcctcacgcc agctacggcc tcatgaaggc aactacccta cccatgattt      3960
     ggagttagct gcggtggttc atgctcttaa gatcaagcgg cactatctca ttgggaatcg      4020
     ctgtgaaata tatattaatc ataagttttt gaaatacatc ttcactcagt cggatctgaa      4080
     tcttcggcag agaagatggt tagaactcat caaggattat aatgtgggaa tccactatca      4140
     tcctggtaag gccaacgtgg ttgccgacgc tctaagtcga aagagccact gcaacactct      4200
     caacgtccga ggcattccac ccgagcttaa tcaacagatg gaagccctga acctaagcat      4260
     agttggtcac ggattcttgg ctgcgttgga agccaagccc accttgctcg atcaaatccg      4320
     cgaggctcag aagaatgatc cggacatgca tggactcatc aagaatatga aacagggtaa      4380
     agctgctggt ttcacagagg atgaacacgg aaccttatgg aacggaaagc gagtatgcgt      4440
     tcccgataac agagaactta aacaactgat acttcaggaa gctcacgaaa gtccttattc      4500
     cattcacccg ggcagtacca agatgtactt agacttgaag gagaaatact ggtgggtcag      4560
     catgaagcgg gaaattgcag agttcgtggc tctttgtgat gtgtgccagc gtgtcaaggc      4620
     agagcaccaa cgaccggccg gacttctcca acctctccaa gtgccggaat ggaaatggga      4680
     tgaaattggg atggatttca tcaccggcct tccaaaaacc caaggtggat atgattctat      4740
     atgggtagtc gtggatcgat taaccaaggt ggctcgattt attccggtga agaccaccta      4800
     tggagggaac aaactagcgg aactctactt cgctaggatc gtgagtctcc atggcgttcc      4860
     caagaaaatc gtatctgata aggggagcca attcacctct cacttttgga agaagctcca      4920
     agaagagctt ggtactcggt tgaatttcag caccggttac cacccgcaga cagatggaca      4980
     gaccgagcgt ctaaatcaaa tcctagaaga tatcgttcgc gcatgtgtcc tagatttcgg      5040
     gaagacctgg gataagagtc tcccctatgc cgagttctcc tacaataaca gttatcaagc      5100
     cagcatacaa atggcacctt atgaagcgtt gtacgggcgc aaatgtcgga caccgctatt      5160
     gtgggatcaa gtcggagaaa gccaagtgtt cgggactgac atcctgagag aagctgaagc      5220
     taaagtcaga atcattcggg ataatctaaa ggtggcacag tctcggcaga aaggctatgc      5280
     agacaaccgt cgccgtgact tggaattcgc agtggatgat tttgtgtatc tccgggtaac      5340
     accattgcga ggggtacacc ggtttcagac gaaaggaaac tcgcacctcg gtatgtgggt      5400
     cctttccgta tcgttgctcg acgcggagaa gtcgcttacc aattggagct gcccgcctcc      5460
     ttgggcaacg tgcatgatgt gttccatgtg tcgcaactca agaaatgcct tcgagtgcca      5520
     tccgagcagg ccgactcaga gcaaattgaa gttcgcgaag atttgaccta cgtggagagg      5580
     ccagtgaaaa tcctggacac catggagcgc aggaccagga accggataat ccgtttttgc      5640
     aaggtccagt ggagcaacca cgccgaagaa gaagctactt gggagcgcga agacgagctg      5700
     aagacagccc atcccgatct cttcgccagt tcttccgaat ctcggggtcg agattccgtt      5760
     taaggggggt aggtt                                                       5775
//
ID   RBTVL_I     repbase; DNA   ; ORY   ; 5949 BP.
XX
AC   AE017121;
XX
DT   04-AUG-2005 (Rel. 10.07, Created)
DT   24-AUG-2005 (Rel. 10.07, Last updated, Version 2)
XX
DE   Rice tungro bacilliform virus like LTR-retrotransposon (internal
DE   portion).
XX
KW   LTR Retrotransposon; Interspersed Repeat; RBTVL_LTR;
KW   caulimoviriadae; endogenous badnavirus; LTR;
KW   reverse transcriptase; RBTVL_I.
XX
OS   Oryza sativa (japonica cultivar-group)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
XX
RN   [1]
RP   1-5949
RA   Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y., Sano Y.;
RT   "Reconstruction of putative DNA virus from endogenous rice tungro
RT   bacilliform virus-like sequences in the rice genome: implications
RT   for integration and evolution.";
RL   BMC Genomics 5(1), 80-80 (2004).
XX
RN   [2]
RP   1-5949
RA   Jurka J.;
RT   "A recent copy of LTR-retrotransposon related to Rice tungro
RT   bacilliform virus.";
RL   Direct Submission to Repbase Update (04-AUG-2005).
XX
DR   Genbank; AE017121; Positions  209328  203380.
XX
CC   LTRs are 99% identical. Present in multiple copies in the rice
CC   genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           503..5788
FT                 /product="RBTVL_I_1p"
FT                 /translation="MDISRSLFRRIASRDDNCSDKQKGKYDDIDELKDVAQ
FT                 VDKQLERYQRDTLRAIRPQQVYCMGFFENKNGLYRISREVELSVLTKPVEL
FT                 KIVAKEFENSLKYSGYKYIHQGMYIIGIKGMTRKKLGAKVLITLLDKRWDT
FT                 INKASLGYLEGDMNENMLITYIAPDLMMPVNEFIDKMSFGFQTKGYEEFKG
FT                 TNLLISIEFIGRLTNRSASKYKINVNDVIEKMHSKGIKFMSPLIIDSEERA
FT                 GEKWPISEFIKNKTLSQPENFISYQDSKGNVSIRFTNYKTRASDDLDAESS
FT                 DRDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEYNNSMKSEWPKIR
FT                 DKELYFYRELSRIKKQKKEKSLVIEIPRTQEIKIEQIKSEEPREEIQKLDK
FT                 VLSEEEQWEVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEE
FT                 GLHNLDNAMEAMEVDLGTGKRKRYGEGSVKNEGERERPARAAGRWPPEKEE
FT                 YSYHYIPGQYRHMGTKRRDFEKPIKFQNQKSDGAILNLAAHDPIDWPNIIS
FT                 IWKGLIVQKYIQNQHNIGNKVEDMITYLETFLGESAKVLWEQWVEKNPNNY
FT                 EELKRAGSNPHNFENIVSNIIIAEDPELGYTTLQNERLKEIEKLTLTSWKG
FT                 IKEFSQHYLYNATTAKQGYNKGIVERYFNKLPDPLGSMIFEEYKKETEGAE
FT                 INISQAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIIQIPLSYGEDRPR
FT                 NKRNHRYQSRNSNNIKTKKRYFLRRSDNRAPFLHKRNVRRYNPKKTYDKTC
FT                 RCFICNSPDHLSRTCPNKDQKRYSSTYEEQERVLIIDSVNENILVCDDEIK
FT                 DDESIYSIIETDEIENTNEEYESTDEELDLIDELAGLKIELMDQLNCEHDW
FT                 IRGKGDYNIKCAFCIYYPSQDNRVTCSICLKQACAECIKANKQKWRKEIEL
FT                 ESDERILSSRVRVLENRINKLEVELENLKINYDIKALPENKDIQNTEFKEQ
FT                 VITLKDSNTAKIIQLKDAITNFGNKYIVKLPFKEILGIRIPVKVKLSPKVS
FT                 YKILALVDTGCTKNIIHDKYFIKCPEIVHTIDDNKAEVSTDMSGIKKIHNQ
FT                 LAHNVEVYINGTKYIIDEITIRNLSMISDDMIIGLRFLQQSVQTTVIHEQG
FT                 ITFIPYQNNVPYISEVRKRGGARIKPDNLEALNLESEERINEYELSENIDN
FT                 YSFSSYLPKSMELPGKTSWEDRYLLKATKDFEYICREMASQKSEWLTNMSS
FT                 WRLPQLPRGHGERFNHNFRITELQQGLLNLLWQTKNKKEKAHALNGLAYYF
FT                 KNFVPSDQKITEKRAKIQDIPHHEERLLDYREEKSRDGQDKLPMEVEQSMA
FT                 TDKNTKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTI
FT                 PQTPYILHNHPNLFLPQYILRTQPKAPCRSCAYKDSCKKKLKSQNPMSTTY
FT                 ENLQPRLSFKTEQTLSCFGQDILDLVWQKFKERQMKIFLGLQDYFFDLLEG
FT                 RERNPAIRVIIYMLPLLRLDDQAISDPSYRFLVLKAEINLQRFRNLPTYNH
FT                 EEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYRIIFSS
FT                 IPPKFTPPVRPAIHYIYIMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWR
FT                 LFSEAAEIEEAITTDYEYQLVFQNKITRIFISKFYNQSYEYFKGAGRIIKP
FT                 DFGNECSKKSYYRSLAQWFQKTEPSEIDTVQSAPMIINEDNE"
XX
SQ   Sequence 5949 BP; 2476 A; 867 C; 1070 G; 1536 T; 0 other;
     taggtttgtc tgaagcatag gtgtggtgta tattgtctga agcataagtg tggtatcaga        60
     gcctggtaat catagagaag ctaaatttag aagctaatat tggaaagtta ataaatacca       120
     aagataatat cgacataagg tgtagactaa gccatactga agaacatagt tggcactcta       180
     ataatagcca actaaattta attgtagatt taatatataa tttctatata aattggagta       240
     agagacaaga agatttagag caaaagttag aagatatata taaagaacaa aagcaatttg       300
     tagaacaata ttcttttctt aataataagc taaatactac attagaatta ttagaagatt       360
     ataagataag gcaaaataaa atttcacaga atagtgatta tattaaagaa ttactagaca       420
     aaatcaactc tagtaaaggt aaggaaatag ttttggcttc atctggcata gtctcatctt       480
     cacaagccat taattctgaa aaatggacat atctaggagt ctctttagaa gaatagcaag       540
     cagagatgat aactgttctg ataaacaaaa aggcaaatat gatgacatag atgagctgaa       600
     agatgttgca caagtagata agcagctcga aagatatcaa cgagatactt taagggcaat       660
     aaggcctcaa caagtatact gcatgggatt ttttgagaat aagaatgggc tttatagaat       720
     atctagagaa gtagaattaa gtgttctaac aaagccagta gaattaaaaa tagtagctaa       780
     agaatttgaa aatagtttaa aatattcagg atataagtat attcaccaag gtatgtacat       840
     aataggaatc aaaggaatga caagaaagaa attaggagct aaagtgctaa taaccttatt       900
     agataaaaga tgggacacaa taaacaaagc atctttaggc tatctagaag gagatatgaa       960
     tgaaaatatg ttgataacct atatagcgcc tgatttaatg atgcctgtaa atgaattcat      1020
     agataaaatg agttttggtt tccaaacaaa aggatacgaa gagtttaagg gaacaaattt      1080
     attaataagt atagaattta taggaagatt gactaataga agtgcctcca aatacaaaat      1140
     caatgtaaat gatgtgatag aaaaaatgca ttctaaagga ataaaattca tgagcccttt      1200
     aataatagac tctgaagaaa gagcaggaga aaaatggcca attagtgaat ttataaaaaa      1260
     taaaaccttg agtcagcctg aaaacttcat aagttaccaa gacagcaaag ggaatgttag      1320
     tattagattt acaaattata aaaccagagc ttcggatgat ttggatgcag aatcatctga      1380
     cagagatatt atagataaca gaagacatag tatatctgaa ttgatggaaa aattagacca      1440
     tgaaagtgaa ataaaatatt atgaagataa attaagagat atagcagatg aatataataa      1500
     ctctatgaaa agtgagtggc ctaaaattag agacaaggaa ctttatttct atagagaact      1560
     atccaggatt aagaaacaaa aaaaagagaa aagcttggtc atagaaatcc ccagaaccca      1620
     ggaaattaaa atagaacaaa taaagtcaga agaaccaaga gaagaaatcc aaaagttaga      1680
     taaggtatta agtgaggaag agcaatggga agtaaatgag aaattattac tagagagtta      1740
     tgaagaagaa aacaacctga tagaggaaat agagaatata gaagaagaag ataatgcaga      1800
     acaatataat gattttatag actcattgga tgaggaaggt ttgcataatc tagataatgc      1860
     aatggaagct atggaagtag atttgggaac aggaaaaagg aaaagatacg gagagggttc      1920
     tgtaaaaaat gaaggagaaa gagaaagacc agccagggca gcaggaagat ggcctccaga      1980
     aaaagaagaa tattcatatc attatatccc aggacagtat aggcacatgg gcactaaaag      2040
     aagagatttt gagaaaccaa taaaatttca aaatcaaaaa agtgatgggg ctatactaaa      2100
     tctagcagca catgatccca tagactggcc aaatatcatt agtatttgga aggggttaat      2160
     agttcaaaaa tacatacaaa atcagcataa tatagggaat aaggtggagg atatgataac      2220
     ttatttagaa acatttttgg gtgaatctgc taaagtccta tgggaacaat gggttgaaaa      2280
     gaatcctaat aactatgaag agctaaaaag agcaggaagt aatcctcaca actttgaaaa      2340
     tatagtatct aatattatca tagctgaaga cccagaatta ggatatacaa ccctgcaaaa      2400
     tgaaagatta aaagaaatag aaaaattaac tttaacaagc tggaaaggta taaaggaatt      2460
     ttctcaacat tatctatata atgcaacaac tgctaagcaa ggatacaata agggaatagt      2520
     tgagcgatat tttaataaac tacctgaccc attaggtagt atgatttttg aggaatataa      2580
     aaaggaaact gaaggagctg aaattaatat ttcccaagcc ataaccttcg tgttcaaaca      2640
     attaagaaaa atatgcacag gaatacaagc ccaaaggtca atgaaacatt ctgattataa      2700
     tttttgcaat aaaataatac aaataccttt atcatatgga gaagataggc ctagaaataa      2760
     aagaaaccat agatatcaaa gtagaaatag caataatata aagacaaaga aaaggtactt      2820
     cttaagaaga tcagataata gagcaccttt cttacataaa cgaaatgtaa gaagatataa      2880
     cccaaagaaa acttatgata agacatgcag atgtttcata tgtaattcac cagatcattt      2940
     aagtagaact tgcccaaata aagatcaaaa aagatattct agtacatatg aagaacaaga      3000
     gagagtttta attatagata gcgtaaatga aaatatatta gtatgtgatg atgaaataaa      3060
     agatgacgaa tcaatatatt ctatcataga aacagatgaa attgaaaaca ccaatgaaga      3120
     gtatgaatca accgatgaag agttagattt aattgacgaa ctagccggtt taaaaataga      3180
     attgatggat cagttaaatt gtgaacatga ttggattaga ggaaaaggag attataacat      3240
     taaatgtgct ttttgcatct attacccaag ccaagataat agagtaacct gtagtatatg      3300
     cttaaaacaa gcttgtgctg aatgtataaa agcaaataaa caaaaatgga gaaaagagat      3360
     agaattagaa tcagatgaaa ggatattatc tagtagagta cgagttttag aaaacagaat      3420
     aaataaacta gaagtggaac tagagaatct aaaaattaac tatgatatta aggcattacc      3480
     agaaaataag gatatacaaa ataccgaatt taaagagcaa gtgataacat taaaagacag      3540
     taatactgct aaaataattc aactaaaaga tgccataact aattttggaa ataaatatat      3600
     agtaaaactg cctttcaaag aaattttggg aataagaata ccggtaaaag taaaactatc      3660
     acccaaggta tcatataaaa ttctagcact agtagacact gggtgtacaa aaaatattat      3720
     tcatgataag tacttcataa aatgtccaga aatagttcat acaattgatg ataataaggc      3780
     agaagtctct acagacatgt ccggaataaa gaaaattcat aatcagctag ctcataatgt      3840
     tgaagtatac attaatggaa ctaaatatat aatagatgag attacaataa gaaacttatc      3900
     catgataagt gatgacatga taattggcct aaggttttta caacaatcgg tacaaaccac      3960
     agtaatacat gagcaaggaa ttacttttat cccatatcaa aacaatgtgc catatatctc      4020
     agaggtacga aagcgtggtg gagccagaat caaacccgac aaccttgaag cacttaatct      4080
     tgagtctgaa gaaagaatta atgaatatga gcttagtgag aatatagaca actattcttt      4140
     ctcatcatat cttccaaaat ctatggaatt gccaggtaag acatcatggg aagatagata      4200
     tttattaaaa gctactaaag attttgaata tatatgcagg gaaatggctt cacagaagtc      4260
     tgaatggctc acaaatatga gttcatggag actgccccaa ctgcctagag gccatggaga      4320
     acgatttaat cacaatttca gaataacaga gctacaacaa gggttattaa acctcttgtg      4380
     gcaaacaaaa aacaaaaaag aaaaagctca tgccttaaat ggcctggcat attatttcaa      4440
     aaatttcgtg ccctcagatc aaaagataac agaaaaaagg gctaaaatac aagatatccc      4500
     tcatcatgag gaaaggttac tagattatcg cgaggagaaa tcccgtgatg gccaagataa      4560
     acttcccatg gaagttgaac aatctatggc aacagataag aataccaagg tattctcaga      4620
     taagattttg atctcagcag atcctgcttc gagcatggtt gctttccaca taaatatcaa      4680
     taacctattg caatcttttc cacataataa accatcatca tccacaaaaa ggcatgatac      4740
     cattccccaa acaccataca tactgcataa tcatcctaat ttattccttc cacaatatat      4800
     actccggacc cagccaaaag caccatgtag atcttgtgcc tacaaagatt cttgcaaaaa      4860
     gaaacttaaa agccaaaatc ccatgagtac tacatacgaa aatctccaac ccagattaag      4920
     cttcaaaacg gaacaaactt tatcctgctt tgggcaagac atcctcgatc ttgtttggca      4980
     aaagtttaag gagagacaaa tgaaaatatt ccttggactc caagattatt tctttgatct      5040
     cttagaaggg agagaaagaa acccagccat acgagtaatc atatatatgc tccctctctt      5100
     aagactagat gatcaggcaa tttctgaccc atcctataga ttcctggttc tcaaagctga      5160
     gataaatctt caaagattcc ggaacctacc cacatacaac catgaagaaa tatctctcca      5220
     aaccattata gatcatggtc ttgtgaattc catatatgca accctcgatc agatccttca      5280
     atctgattta ggaaacgctg tgaaagatgt atgcaggaga cttggacatg gaagatacag      5340
     gattatcttc tcctcaatac caccaaaatt cacaccacct gttcgtccag caattcatta      5400
     tatatatatc atgaagggac aatttaattt tcaagaagac ggtcctagca aactatcgga      5460
     tgaagaggaa gaaatatata caacagttgc taatcatgaa aattggagat tattttctga      5520
     agctgcagaa attgaagaag ctatcaccac agattatgaa tatcagctgg ttttccaaaa      5580
     caagatcaca aggattttta tcagcaaatt ctacaaccaa agttatgaat acttcaaggg      5640
     agcagggcgc ataattaaac cggattttgg aaatgaatgc tccaagaaaa gttactacag      5700
     aagcctggct cagtggtttc agaaaacaga gccatcagag attgacacgg tgcaatcagc      5760
     accaatgata atcaacgaag ataatgaata aagatcttgt catccccgac aaagatcact      5820
     attcaagata aggaatctac actattccag ataagtatgg atcttggtgg tcatgggcag      5880
     ccagatgaat agaattcttt aagctaaata tgtttttcaa tatatattga taatagaata      5940
     tcaataatt                                                              5949
//
ID   SZ-10LTR    repbase; DNA   ; ORY   ; 1412 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice long terminal repeat SZ-10LTR.
XX
KW   Long terminal repeat; SZ-10LTR; retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1412
RA   Jiang N., Wessler R.S.;
RT   "SZ-10LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2(7), 72-72 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1412 BP; 464 A; 353 C; 261 G; 334 T; 0 other;
     tgaacgcgca aagatgtagc ctagaggggg gtgaataggc tttcctgaaa ttcacaaaca        60
     aatcgcagcg ataaaattca gcaggaccag aacttccggg tgtggaacac cggaacttcc       120
     gatctgctca gactgtccgg aacttccgaa gttctaaaca tcggaacttc cgagcaacaa       180
     aaaaacctgt aaccctagca gacacttaaa ctaaattgca cgaaataaac tataggaaaa       240
     cagagcagat acacaatcac agcatcgtgc acagaattat cacagaaaag acaagggcta       300
     ttttttaccg aagttcagat cttgaaatcc tactctccat tgaggtgctc caaagagccg       360
     gatctcaatt aaccccttgc cttacttgtg caaagaaccc agaagaagtc caaggctttc       420
     aattcaacac tcctaggtca ttttctagaa tttgagtgat caccaagatc caactcacaa       480
     atccttctag aaaagaccac aagtgcaagt tgctctaact aggagaacct ctaaaaactc       540
     agcacaagaa tccttaatca cttacctcgt ttccttgtgg aggtgaggaa aaccttcaca       600
     aactttcccg ggacatccac aagattttag aagctcgcgg gcgacaccta tccatctagg       660
     agaagatctc caagagtaat aagccccaag tgatagccca caagatatcc aaagtgctca       720
     accacaccta gtcttcaaag cttctccaaa tcactcctac actctcatct attctcacaa       780
     tctcacaaga aatgctctaa attttgagtg gagaaagcca agggatcttg ggagaggcta       840
     gaacaaccgt aggggatgaa aaaactaaag tggaatagcc aaaaggtgag ctgggtgcga       900
     tctggatata tataacggct aggtgacgtc acctcgccgt tactcacatt tttgaactgg       960
     aggaagtccg gaagttcctg accctcggaa cttccggcca acacttaggc aaaattcatc      1020
     cagtgcaggg tccggaagtt ccaggtccag agaacggaac ttccagccag ccttctctgt      1080
     ccggtctgga cccatttgca aaaatggctc ccaaaaatat tctatcatta ggaacccact      1140
     aagatcactt tttatatctc agaaccccac ttggaacccc tcttaatagt acggattttc      1200
     ctaaaactcg atttcaaaaa ataaactatc ttattgacct tcgagcttca aatccgcata      1260
     aatgaagttt gtaggggggg tctccaagca tttcttgatc acctaagatc acctcgggac      1320
     taattacctg agtatctcaa taaacacatt agtcccttaa ccttattcat cattaatcac      1380
     caaaacccac tagaaggata aatgcaactt ca                                    1412
//
ID   RETROFIT_I  repbase; DNA   ; ORY   ; 4396 BP.
XX
AC   U72726;
XX
DT   06-NOV-2002 (Rel. 7.1, Created)
DT   06-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   Rice copia-type LTR retrotransposon RETROFIT_I, internal region.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat;
KW   COPIA superfamily; RETROFIT_I; internal region.
XX
OS   Oryza longistaminata
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4396
RA   Song Y.W., Wang L.G., Chen L.L., Kim S.H., Pi Y.L., Holsten T.,
RA   Gardner J., Wang B., Zhai X.W., Zhu H.L., Fauquet C., Ronald P.;
RT   "A receptor kinase-like protein encoded by the rice disease
RT   resistance gene, Xa21.";
RL   Science 270(5243), 1804-1806 (1995).
XX
RN   [2]
RP   1-4396
RA   Song Y.W., Pi Y.L., Wang L.G., Gardner J., Holsten T.,
RA   Ronald C.P.;
RT   "Evolution of the rice Xa21 disease resistance gene family.";
RL   Plant Cell 9(8), 1279-1287 (1997).
XX
DR   Genbank; U72726; Positions    4436    8831.
XX
SQ   Sequence 4396 BP; 1229 A; 934 C; 1051 G; 1182 T; 0 other;
     tggtatcaga gcctttttcc acctcaatag atcgcatctt tcatccacat ggcgtcgtcg        60
     tcgtcttcct caggcgcggc agccgccaat ctcctccaag gccactcggt ttcagagaaa       120
     ctcgggaaag ccaaccatgc attgtggaaa gcgcaagtta gcgctgcagt gcgtggagcc       180
     cgattgctgg gctacctcaa cggcgatatc aaagctccag acgccgaact ctcggtcacc       240
     atagatggga agaccacaac aaagccgaat ccggcatttg aagattggga ggccaatgac       300
     cagcttgttc ttggctatct cctgtcatct ctttcaaggg atgtgctgat ccaagtcgcc       360
     acatgcaaga cggcggctga ggcatggcgg agcattgaag cactctactc caccggcact       420
     cgagcaaggg cggtgaacac cagactcgcc ctcaccaaca cgaagaaagg aacaatgaag       480
     atcgccgagt atgtcgccaa gatgcgagcg cttggtgatg agatggctgc cggcggtcat       540
     ccacttgatg aagaagacct tgtccagtac atcatcgctg ggctaaatga agacttcagc       600
     ccgatcgtct ccaacctctg caacaagtcc gatcccatca cggttgggga gctgtattct       660
     cagctcgtca actttgaaac cctccttgat ctctaccgca gcactggtca gggaggagct       720
     gcttttgtcg ctaatcgcgg caggggcggc ggcggcggcg ggcgcggcaa caacaacaac       780
     tccggcggcg gcggcggcag aagcgcgccg ggtggacgcg gcagcggcag ccagggtcgc       840
     ggtggccgtg gacgcggcac aggaggccaa gacaggcgcc ctacttgcca agtttgtttc       900
     aagcgtgggc atacagcagc tgattgttgg tatcgcttcg acgaggacta cgttgcagat       960
     gagaagctcg ttgctgctgc tactaactcg tatggtatag atacaaattg gtatattgat      1020
     acaggtgcta cagatcacat taccggtgaa ctagagaagc ttaccaccaa ggagaaatac      1080
     aacggcggcg agcaaattca cactgctagc ggagcaggta tggatattag tcacattggt      1140
     catactattg tgcatacccc tagccgtaat attcatctaa ataatgtcct ttatgttcct      1200
     caagccaaga aaaatcttat atctgctagt caattagccg ctgataattc tgcttttctt      1260
     gaacttcact cgaaattctt ttctataaag gatcaggtaa cgagggacgt tctgcttgaa      1320
     gggaaatgta gacacggtct ctacccgatc cccaagttct ttggtcgctc aaccaacaaa      1380
     caagcccttg gtgccgccaa gttatccctg tctaggtggc atagccgtct aggacatccg      1440
     tctcttccta ttgttaagca agtcattagc agaaataatc tcccatgttc agttgagtca      1500
     gtcaatcagt ctgtgtgtaa tgcttgccaa gaagcaaaga gtcatcagtt accttatatt      1560
     agatctacta gtgtgtctca atttcctctt gaacttgttt tttctgatgt ttggggccct      1620
     gctccagagt ctgttgggag aaataaatat tatgtgagtt tcattgatga ttttagtaag      1680
     tttacttgga tatacttgct gaaatacaag tctgaggttt ttgagaaatt taaagaattt      1740
     caggctttag ttgaacgaat gtttgataga aagattattg ccatgcagac tgattggcgg      1800
     ggggggagat atcagaaact taattccttt tttgctcaaa taggattgat catcatgtgt      1860
     catgtcctca cactcatcag gcagaatggg tcagctgaga gaaaacaccg gcatatcgtg      1920
     gaagtaggcc tttctctttt atcttatgca tcaatgcctc ttaagttttg ggatgaagcc      1980
     tttgttgcag ccacttatct catcaatcgt atacctagta aaaccatcca aaattctaca      2040
     cccctagaga aactgtttaa ccaaaaacct gactactcat ccttgagagt gtttggttgt      2100
     gcatgttggc ctcatcttcg cccttacaat acacacaaac tccagtttcg ctccaaacag      2160
     tgcgtgtttt tgggttttag tactcaccac aaaggattta agtgtcttga tgtgtcatca      2220
     ggccgtgtct acatctcaag agatgttgtc tttgatgaaa atgtttttcc cttctctaca      2280
     ctccactcaa atgcaggagc cagactcagg tctgaaattc ttttgttgcc gtcccccttg      2340
     acaaactata atacggctag tgcaggggga acacatgtag ttgcaccagt ggctaatact      2400
     ccattaccta gtgataattt aatttctaat gctgctgatg tgacttctgg agaaaatagt      2460
     gcagcacatg aacaggaaat ggagaatgag caggaaatag agaacgtcat gcatgggaac      2520
     gacgtgcatg gggacgcggc atcgggacct gtgctggatc aaccaactgc tgacagcagc      2580
     actgcgccgg accagggagc tgacaccagt gacgcggtct ctggcgcagc ttctgacgcg      2640
     ggtggagaca ctgccaccct gggagctgga gcagcaaata gcgcagcagc aggtggtgaa      2700
     gaatcccagc cggtgcagcc tgatgtgacg ggtacagtac tggctacagt agcccctgca      2760
     tcgagaccac acactcgtct gcggagtggt attcgaaaag agaaggtata cactgatggc      2820
     accgttaaat atggttgttt ttcttctact ggtgaaccac aaaatgataa agaggcttta      2880
     ggagataaaa actggagaga tgcaatggaa actgagtata atgctttgat aaaaaatgac      2940
     acatggcacc tagttccata tgagaaagga caaaatatca ttgggtgtaa atgggtatat      3000
     aagattaaaa ggaaggcaga tgggacactt gatagataca aagctagact tgtagcaaag      3060
     gggtttaaac aaagatatgg tatcgattat gaagatactt ttagtcctgt tgttaaagct      3120
     gctactatta gaattattct gtccattgct gtctctagag gttggagtct tagacagtta      3180
     gatgttcaga atgcctttct tcatggattc ttagaagaag aagtctacat gcaacaacct      3240
     cctgggtttg agtcatcctc taaacctgat tatgtatgta aattggataa ggcattatat      3300
     gggctgaaac aagcaccaag ggcgtggtat tccaggctga gtaagaaact tgttgaactt      3360
     ggttttgaag cttcaaaggc tgatacctca ttattctttc ttaacaaagg agggatactt      3420
     atgtttgttt tggtatatgt tgatgatata attgtagcta gctctacaga gaaggcaact      3480
     acagcacttc tgaaggatct aaacaaggag ttcgcactta aggatttggg agacctgcac      3540
     tacttccttg gaattgaggt aactaaagtt tccaatggcg ttatcttgac tcaagagaag      3600
     tatgcaaatg atctgctaaa gagagttaat atgtcaaatt gcaagccagt tagtactcct      3660
     ctttctgtta gtgaaaaatt aactctatat gagggatcac ccttgggtcc taatgatgca      3720
     atacaatata gaagtatagt tggtgcttta caatacttga ccttgacaag acctgacata      3780
     gcttattcag taaacaaagt ctgtcagttt cttcatgctc ctactaccag tcattggatt      3840
     gcagtaaaaa gaatcctcag atacttgaac caatgcacaa gtctaggact tcatatacac      3900
     aagagtgctt ctactcttgt tcatgggtat tctgatgcag actgggcagg tagtatagat      3960
     gacagaaaat caacaggagg atttgcagta tttttgggtt ctaatcttgt gtcctggagt      4020
     gctaggaaac aacctactgt gtcaaggtca agcacagagg cagaatataa ggctgtggca      4080
     aatactacag ccgaactgat atgggtacaa accttgttaa aagaattggg aattgagtct      4140
     cctaaagctg ccaagatttg gtgtgataac ttaggagcta aatatttatc agctaatcct      4200
     gtgtttcatg caaggacaaa gcatatagag gttgattatc attttgtaag agaacgagtg      4260
     tcacagaagc tgttagagat tgattttgtt ccatcaggag accaagttgc tgacgggttt      4320
     acaaaggcac tgtcagcttg tcttcttgaa aattttaaac acaatcttaa cctagctagg      4380
     ttatgattga gagggc                                                      4396
//
ID   RETRO2_LTR  repbase; DNA   ; ORY   ; 1092 BP.
XX
AC   .
XX
DT   19-MAY-2005 (Rel. 10.05, Created)
DT   19-MAY-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Long terminal repeat of gypsy-like non-LTR retrotransposon RETRO2
DE   - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; RETRO2_LTR.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1092
RA   Jurka J.;
RT   "A consensus sequence of gypsy-like LTR retrotransposon from rice
RT   sequence of gypsy-like non-LTR retrotransposon from rice.";
RL   Direct Submission to Repbase Update (19-MAY-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1092 BP; 226 A; 319 C; 330 G; 217 T; 0 other;
     tgtcggtgac atgggaccgg gagtatcgtg actagaggct tgaggcagac gcaatcgccc        60
     acgtggcctg gcaccctcgg gggacgtcgg gcccgagggt gatgtgtccg ccctcctcct       120
     agtctccccg agggggtcgg gctgctcccg cctcggcccc gagggccgag gcgccccgac       180
     cccctgtggg tgtttgctcc acgtgtatgg gttaggtgag cacagtgggg ctcacctacc       240
     gcatttattg cggtttggcc gagcgtgtca cgccgcatgc aacgcagtgc agcgcgctcg       300
     tttatccggt ctgtgaccag tcacagaccg gtcagatcgc gggttaggtg gccacaggcg       360
     gtctgacaca cgcctcgccc cgtcccgtca ggacgagagc ctctaggcac tcgtccccag       420
     ccggagctag cgtgttacct cctagagatg gcacgttagc cctggtcaga tatatgccag       480
     gcttcatccc aaccattaca ggcaagatgt tgcatgaaga agggcggaca tgcagattgc       540
     taaactgacg cgtggtggac aagaatgacc gatgtgactg gtctgactcc ggtcacgtca       600
     tcagcagaca gccacgatcc cacgttgcat ctgcttccgg cgagagtggg ggtaggtgtg       660
     ggccgtccca tcggagggtc attcggacgg caaccataca aatctccgtc catttatgaa       720
     aaggtggggg aggtccccac aaaaaagagg gaaatggtgc atgtggtatc cccttaagat       780
     ataaaaggag gaccttgccc accgagagag ggggtcttgg actgaacctt tccagattag       840
     gaacccagaa caagggagag gctggctcat actttgtaac tttttcatac acagatccac       900
     caaaacacag gagtagggta ttacgcttct cagcggcccg aacctgtata catcgcccgt       960
     gtctcgtgtg cttcctgtct cgcgatcctt ccacatacag attgagagct tagaatctca      1020
     cccagggccc ccggccgaac cggcaaaggg gggcctgcgc ggtctcccgg tgaggagccc      1080
     cacgctccgt ca                                                          1092
//
ID   SZ-6IN      repbase; DNA   ; ORY   ; 4629 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice copia-type retrotransposon SZ-6.
XX
KW   LTR retrotransposon; COPIA superfamily; internal region; SZ-6IN.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4629
RA   Jiang N., Wessler R.S.;
RT   "SZ-6IN: a copia-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 120-120 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4629 BP; 1183 A; 1090 C; 1476 G; 880 T; 0 other;
     cccgcccgca gtcgtagcag gaggagtacg aacacaaaga ctggaccgaa aattagtaaa        60
     taactgaacc ggtaagccct tggtcatgat gttcgcgaac tggtgtgatg aaggaacgta       120
     aagcacccgc acttgtccca aagccacctt ttcttggaca aaatgaatgt ccatctcgat       180
     atgcttcgtc cgatgatgat gcacaggatt cgctgtcatg taaatagcac tcacattgtc       240
     acaatagaca acagtacccg aagcaagtgg gacatgaagt ttctggagta gttgtcacaa       300
     ccagcatcac tcggcaatgg catgggcaac agcacggtac tccgcctcag cactagagcg       360
     ggagacagta gtctggcgct tggatgacca agagactaga ttgtcgccaa gaaagacaca       420
     gtagccgaac gtagaacgat gagaattggg gcaacctacc caatccgcat cggagtatgc       480
     cgtcagggac tgaagcgggc cagagtcgat gtggaggccg gaggagagac tgcccttcac       540
     gtaccggagg atacgcatga ccaaggcgag atggagctct cacagatcat gcatgaagag       600
     gcagacttgc tgaacggcgt aggccaaatc cagtcgagtc agcgtgaggt actgtagagc       660
     accagcgatg cttctgtact ccgaagggtc gacgacaggc aggccgtctg tagcagagag       720
     cttcgcacga gtgtccactg atgtcgaggt agagtggcac tcgaccatgc cgacctgctg       780
     aagaagatcc acagcatact agcgctgcga gaggaagagg ctgtcggagg agcgtgtcac       840
     ggagatgccg aggaagaagt ggaggtcacc aaggtttgtc atggcaaact cgaagtggag       900
     gcgtgtcgta agttactgaa gtaatgtcgt ggtcgaagcg gtgaggataa tgtcatcgac       960
     gtacagcaga agataggcaa tgtgatctcc atctttgtaa acaaagagag atgtattgga      1020
     tgctgaaggc ataaaaccca tctgttgaat atacctagca aaccgctggt accatgcacg      1080
     aggagcctgc ttgagaccgt acagggactt cggcaataga cagacagcat caggggcagc      1140
     aggatcaaca aacccggagg gttgctgaca gtagacgatc tcctttaggt gaccatgaag      1200
     aaatgtgttc ttcacatcta gctgatgaat cggccaagca cgggaggcag cgatgctgag      1260
     aacaacccgt attgtggctg gcttgacaac cgggctaaat gtctcgtcgt agtcgatgtc      1320
     gtgctgctgg gagtatccac ggactaccta acaagccttg tggcgggcaa gtgagccgtc      1380
     agagtggaac ttgtgcttaa atatccactt gcccatcaca atgctggccc taggggggcg      1440
     aggaatgaga cgccaagtgc tgttgtcgac caacaccttg tactcgtcgg ccatggcagt      1500
     gcaccagttg ggatcagcca acacactgcg atagttggcc ggaacaggag aggcggtggc      1560
     atgggtagct gtgtagatca gccggtcaac cggccgtagg gagccagtct gggagcatgt      1620
     caccatggaa tgcggttgag gagcagcagc cacgtcaacc acatgggcgg aagacgatac      1680
     cgggaccgtc ggagcaggcg acggctgtag acatgacgaa agggtgacac gatggtgccg      1740
     cgtgggtggt accggccgat ggggcaacac cggtcgagga ggcgccgacc aacggtgtgc      1800
     cagccgttgg ggcgcagctg gccgcggtga ctgtgtcgtc cggcaagcgt cggccgaaga      1860
     ggggaatgta cggttgctca acctctgtgg agggagccac cgtatggggt cgcggtcgct      1920
     caacctccga ggagggagcc accttgagag gtcgcggttg ctccacctcc gaggatggag      1980
     tgaccgctag agggagtccc tgcagcaaaa aatcaaaaga cgaggcatta gggaaatcgt      2040
     gattcatcaa aaacgatgtg gcgcgaaatg atgatacacc gagtggagag atcgagacat      2100
     tggtatcact tgtgggaggc cgggtaccca agaaaaatgc aagctgtcga gtgaggggca      2160
     agcttatgtg gagttgtggc actcaagttt gggtaacaaa gacagccaaa aacccaaagg      2220
     tgggagtact ctggagtggt gcgatgtaga agctgaaaag gcagtgagtg gtgaacagag      2280
     gaagagggtc tccggttgag aaggtaggtg gcggtagcga gagcctcagc ctagtacgac      2340
     ggaggcatgg aagcctatat aagaagcgtg ctatggagtt gttgatggtg cggagcatcc      2400
     gttcggcttt tccattttgg gaggaggtgt aagggcaaga gagtcgttgc tgggtgccac      2460
     ggctggccag aaaggtagta gtggcggtat tgatgaactc tcagctatta tcagcttgaa      2520
     gggattctag tggtaggcca aactgggtgg aaacatactc ggcaaattca acaatatgac      2580
     gatgaacatc atatttgtgt cgaagcggga aggtccaaca gaaatgactg aaatcatcaa      2640
     gcaccactaa gtaatattta aaacctgaag tactcaacac cggagaggtc cacacatcgc      2700
     aatggacaag ctcaaaggga acaaaagtgc aagaggatga cctaacaaaa ggtaatctgg      2760
     tatgcttccc taactgacac gcatgacata gagaggtgtc gattttatta taggaaatgg      2820
     agtgcatatt ccgaagaatg tggcggccga accaagatga cccagatgac ggtgccaaag      2880
     agtggaggaa gtggtgagga agcagtgggc ggcgctggag ggagtggcag ctggaagagt      2940
     gtagagttcc ccgtggctat tgcaacgaag aatcacgcgc cgggtctgaa ggtccttaat      3000
     agagaaacca aattcatcaa actcaatgga acatttattg tcgcaagtaa actaacgaac      3060
     agaaagtaaa ttacgaacta aggaaggggt gataaggatg tttttgagtg caaatttggt      3120
     ggttcctatg ggaaggaatg atatgccacg acaaataacg gggatagttt gaacatttcc      3180
     aaaagtaata aaggtgtggg agttaggcaa gcaagttacg aggataccgt cagtggagga      3240
     catatgagat tcgcgccagt gtccaaaacc cagttatttg tactttagaa tgccatctag      3300
     ttcaaggctg caatgaggct agcctgctcc caattgggct agcctgtaga tggcccagcg      3360
     aaggtggctt gtgcctggga atagtgggcc accggagccg gcccaagaag accagctgag      3420
     gggagaaggg gggggggggg ggcgccaggc cagttgctgg gccggccaag ggttaaagca      3480
     aacccaaggc ccagccggcc gccagctagg gtttccctgg ccgccaccac ccccagccca      3540
     gccgccgcca ccaccccctc cagaggagcc gcgtgcgccg cctccacccc cactgccgcc      3600
     tcccccattc ccgcctccgg tccagccgcc gccgccgccg ctgtcggtca agccaccgcc      3660
     actgcggccg ccgttgccat tgcagttgcg gcggttgttg gtgccgccac cgcggccgcc      3720
     agaggagccg ccgcctccag tccagccgcc gacaccactc ccaccgtcgc gtgcgctgcc      3780
     actgccccca cctctagaga ggccgccgcc accggaagag gcgttgccgc cgagagggca      3840
     agaggagcca gaggtggcgc ttgcaaccag cgctgtcgcc gcggccacct tggccgcgtt      3900
     cgtgatgcgc agctccttca acaggagggt gttgcatgcc gatgtgaagc tcaggaggac      3960
     gtccgtagct gcgatgttgt cggcggtgtt ggagaagtcg tcattgaggc ctcgaagaag      4020
     gttgaggacg agttgggact cagagacggc gtggccgaca tcgcgaaggg cgtcagtggc      4080
     agtcttcatc ttctggcagt agtcgacaat ggaggaatcg ccttgaatca tggagtgaaa      4140
     ttgatggctg agaaagatcg ctcgaggctg tttgttggcg tggaacatgt cctcgatggc      4200
     gacccacagc tcccgagtgg tctaatctgg ctccagaggt cgtggatgtc gtcggcgact      4260
     gatccaaaga tccagttgcg gatgtaacag tcagcctgtt cctaggctgg gtcgttggga      4320
     cgtggagggg cggagccgtc gatgtgagcc atcaactcaa acttgccgca cagggaggtg      4380
     aagaaggcct tccatttgtt gtagattggg tgggtgttct ccagggtgat ggggaagtgg      4440
     gatttgacgg cgactgtggc ataggggtgg aggaactcac tggtggtgct ggcagaggaa      4500
     acaccactgg agcctgagga ggtggaggat tgagttgatt cagtcgacat ggccagcact      4560
     cgccgaggag gcagctgtga tgacagcgtg ctagagcagc ggaaaagaag gtaagaacct      4620
     ctgatacca                                                              4629
//
ID   COPIA2-I_OS repbase; DNA   ; ORY   ; 4509 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   O. sativa Copia LTR retrotransposon - internal consensus.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; COPIA2-I_OS;
KW   reverse transcriptase.
XX
OS   Oryza sativa (japonica cultivar-group)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
XX
RN   [1]
RP   1-4
RA   Gentles A., Jurka J.;
RT   "Rice Gypsy LTR retrotransposon.";
RL   Repbase Reports 5(3), 47-47 (2005).
XX
CC   [1] (Consensus)
XX
CC   962 bp LTR is COPIA2-LTR_OS. This copia-type retrotransposon
CC   appears
CC   to have been active recently in the rice genome, as there are
CC   numerous intact copies which are 99% or more similar to the
CC   consensus. The internal sequence contains a long uninterrupted
CC   ORF
CC   that has an integrase domain. The element is flanked in the
CC   genome
CC   by 5 bp TSDs.
XX
SQ   Sequence 4509 BP; 1251 A; 836 C; 1151 G; 1268 T; 3 other;
     atccaaaaac cttattatag gcactgtgat tttactatgg ctggttttgc cgatgcactg        60
     aggccggata aattcaccgg tgtgcatttt aagagatggc agatcagggt cactctgtgg       120
     ctgacagcta tgaaatgctt ctgggtgagt actggcaaac ctgaaggagt tcttactgct       180
     gaacagcaga agcaattcga ggaagccact actctctttg tgggatgcat tcttagcgtt       240
     cttggcgatc gtctggtcga ggtgtatatg catatgaccg acgctaagga gttgtgggat       300
     gcactgaata ctaaattcgg tgctactgat gctagcaatg atctgtatat catggagcag       360
     tttcatgact acaaaatggc tgacaaccgt tctgtagtcg aacaggctca tgagatacaa       420
     accatggcta aggaactcga actccttaag tgtgtcttac ccgacaaatt tgtggccggg       480
     tgcattattg caaaactacc tccatcttgg aggagtttcg gtactgcact caaacacaag       540
     agacaggaat actccgttga ggggttgatt gcgtctcttg atgttgagga gaaagctcgg       600
     gaaaaagatg ccgcgtctaa gggcgatggt gggcagtcca gtgccaatgt tgtgcacaag       660
     gcccagaaca agagcaaggg gaaatacaaa gctcagcaga ccaccaactt caagaagcag       720
     aagaagaaca acaacaatcc taatcaggat gagaggactt gctttgtgtg tggccaagtt       780
     ggtcatctgg ctaggaagtg tccacarcgc aaggggatga aggcacctgc agggcagact       840
     tctaagtctg ctaatgtgac cattggcaac actggagatg gaagcgggta tggtaattta       900
     cctactgttt tttcagttaa tcaatctact aattggtggg ttgatactgg ggccaatgta       960
     catgtttgtg ctgacatctc attgttttct tcttatcagg tcgcacgggg ttccaccgtc      1020
     ctaatgggga atgggtcaca tgcttctgtt catggtgttg gcacggtaga tctgaagttt      1080
     acttcgggaa agatcgtgca gctgaagaac gtgcagcatg tcccttctat cgacaggaat      1140
     cttgttagtg gctcccgtct gactagagac ggatttaagt tggtttttga gtctaataaa      1200
     gtagtcgtgt ctaaacatgg atattttatt ggtaaaggtt atgagtgcgg aggcctgttc      1260
     cgcttttccc tttctgattt ctgcaataag tctgtgaacc atatttgtgg cagtgtggat      1320
     gatgaggcta atgtttggca ttcacgttta tgtcatatta attttggctt gatgtctcgg      1380
     ctttccagca tgtgtttaat tcctaagttt tccattgtca aaggttctaa gtgccatagt      1440
     tgtgtgcaat cgaagcaacc tcgcaagcct cacaaggctg ccgaggagag aaacttggca      1500
     ccactagaac tcctacattc agatctttgt gaaatgaatg gggtgttgac gaagggtgga      1560
     aaacgatatt tcatgacatt gattgatgat gctactagat tttgctatgt gtacttgttg      1620
     aaaacgaaag acgaggctct agactatttt aaaatttata aggcagaagt tgaaaatcaa      1680
     cttgacagaa agataaaaag gcttaggtct gatcgtggtg gagagttttt ctcgaacgag      1740
     tttgacttat tctgtgagga acatggcatc atacatgaga ggacgcctcc ctattctccc      1800
     gagtctaatg ggattgctga aaggaagaac cgcacactga ctgacttggt gaatgccatg      1860
     ttggacaccg cgggactgcc taaggcatgg tggggggagg cattgttgac ctcaaatcat      1920
     gtgttaaaca gagttcctaa cagaaataag gacaaaacac catatgagat atggattggt      1980
     agaaaaccat cactttctta tttgcgcaca tgggggtgct tggcgaaagt caatgtacca      2040
     ataacgaaga agcgcaaact tggacctaag actgtggact gtgtttttct gggatatgct      2100
     catcatagca ttgcctatag atttttaata gttaaatccg aggtaccgga catgcatgtt      2160
     ggtacaatta tggagtctcg tgatgctacc ttctttgaga gctttttccc aatgaaggat      2220
     acacatagtg gttcgaacca accctctgaa ataattccca gttcaatcac accaccagaa      2280
     caaactgaac atacacatga acttgtctct gaggaggatg tcagtgaagc tcctcgaagg      2340
     agtaagagac aaaggacggc taagtctttt ggtgatgatt tcactgtgta cctcgtggat      2400
     gacactccta agtcaatttc agaagcatat gcatctcctg atgcagacta ctggaaggag      2460
     gctgtccgta gtgaaatgga ttccattatc gctaacggga cttgggaggt gacagagcga      2520
     ccctatgggt gtaaacctgt ggggtgcaag tgggtgttca agaagaagct taggcctgac      2580
     ggtactattg aaaagtacaa ggctcggctt gttgctaagg gctatactca gaaagaaggc      2640
     gaagatttct ttgacactta ctcacctgtt gctagattga ccacaattcg tgtgctactt      2700
     tccctagcag cctcacatgg tcttctcgtt catcaaatgg acgttaagac agcttttctt      2760
     aatggagagc tggatgagga gatctatatg gatcaacctg atgggtttgt agttgaaggt      2820
     caagaaggca aagtgtgcaa attgttgaag tctttgtatg gtctgaaaca agctcctaag      2880
     caatggcatg agaaatttga caaaacattg acatctgcag gctttgcagt caatgaggca      2940
     gataaatgtg tgtactatcg ccatggtggg ggtgagggag ttattttgtg cttgtatgtt      3000
     gacgacatac tgatatttgg gacaaacctt gaggtgataa atgaggttaa atcattcttg      3060
     tctcaaaatt ttgatatgaa agatttggga gtagctgatg ttatcttaaa cattaagcta      3120
     attagaggtg agaatgggat tacactcttg cagtcccatt atgtggagaa gatcttgaat      3180
     cgctttggct acattgatag taagccttct ccaacacctt atgatcctag cttgttgctt      3240
     cgcaagaaca agagaattgc taggaatcaa ctggaatact cccaaatcat tggctcgttg      3300
     atgtacctgg ctagtgcaac taggcctgat atctcctttg ctgtgagcaa gttgagccga      3360
     tttacctcta atccgggaga tgatcactgg cgtgcgcttg agcgagtaat gcgctatctg      3420
     aaaggtactg tggaattggg gcttcactat actgggtatc ctgcggtact ggagggttat      3480
     agtgattcta actggatctc tgatgtggat gagatcaaag ccactagtgg atatgttttc      3540
     acactgggtg gtggtgctgt ttcatggagg tcttgcaaac agacaatttt gacgaggtca      3600
     accatggaag cagagctaac ggcactggat actgctactg ttgaggcaga atggctgcgt      3660
     gatctattaa tggatctgcc tgttgttgaa aaaccggtgc cggctatcct tatgaactgt      3720
     gacaatcaaa cggtaattgt caaagtgaat agttctaagg ataatatgaa atcgtctaga      3780
     catgtgaaaa gacgattgaa gtctgtcagg aaattaagaa actccggagt tataacgttg      3840
     gattacatcc aaacagcgag aaacctggca gatcccttca cgaagggact atcacgaaat      3900
     gtgatagaca atgcatcgaa ggagatgggt ttgagaccca tgtgagttat actatggtgg      3960
     taacccagtc tatgtgatcg gagatcccgt gaattagatc ctgggaagaa caaaccatta      4020
     ataaactaga ggagagtacc aatatatata ccctctccaa gtgaagatgc atatactctc      4080
     gtgagctgca aggcaggttg gctatgcctt aatgagttct gttggcttta attagcraag      4140
     atgttgtcct gcagagcatt cttgaargaa ctcacctttg tgagcttgac tgttggtcgc      4200
     agtctatgaa gattttgggt gaatcttcta ggaagcttac taaagaccta ggagtatgac      4260
     ttatacgctc cacccgaggg gtagtctaca gacggtctag taccagataa gactttgagt      4320
     gaaacttgct tgcacaagac ttgcaattca aggcgtagtc cattgttcaa gttgtgagta      4380
     agtgtagctt ggagttctag gtggatgttc aaccttaatt ggtctccatc gaaccgctgg      4440
     tatataaaca gtacattgga aaaggcaaat ctcagtggga ttttgagatt tggtggggga      4500
     ttgttggaa                                                              4509
//
ID   RIRE5-I_OS  repbase; DNA   ; ORY   ; 4471 BP.
XX
AC   AB105803; AB105803.1; GI:29027728; VERSION;
XX
DT   11-JUL-2003 (Rel. 8.06, Created)
DT   26-MAY-2005 (Rel. 8.06, Last updated, Version 2)
XX
DE   Oryza sativa retrotransposon RIRE5: internal sequence.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; ORF; RIRE5;
KW   RIRE5-I_OS; RIRE5-LTR_OS; internal sequence.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4471
RA   Ohtsubo H., Ohtsubo E.;
RT   "RIRE5-I_OS.";
RL   Direct Submission to Repbase Update (13-MAR-2003)Hisako Ohtsubo,
RL   Institute of Molecular and Cellular Biosciences, The University
RL   of Tokyo, Section of Chromosome dynamics; Yayoi 1-1-1, Bunkyo-ku,
RL   Toukyo 1130032, Japan (E-mail:hohtsubo@ims.u-tokyo.ac.jp,
RL   Tel:81-3-5841-7854, Fax:81-3-5841-8484).
XX
RN   [2]
RP   1-4471
RA   Jurka J.;
RT   "Consensus sequence of RIRE5 LTR-retrotransposon.";
RL   Direct Submission to Repbase Update (26-MAY-2005).
XX
CC   [2] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1..3927
FT                 /product="RIRE5-I_OS_1p"
FT                 /translation="TIQKPDRSFSVVGFAAALKPHAFDGSNYKRWKARALL
FT                 WLTAMQCFYVSRGKRSEPPLSPEEEAKFEASDCLFRGALISVLADNIVDVY
FT                 MHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQ
FT                 MLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIG
FT                 SLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAAT
FT                 NFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGK
FT                 ILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAA
FT                 VHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNK
FT                 CVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLC
FT                 HVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPL
FT                 ELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIY
FT                 KAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNG
FT                 VAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPF
FT                 EEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGY
FT                 RFLIVNSGVPDMHAGTIFESRDATFFENEFPMKYTPSTSSKETVMPHEHFA
FT                 PIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEE
FT                 AYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP
FT                 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLV
FT                 HQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQ
FT                 WHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNV
FT                 IEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRF
FT                 GYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISF
FT                 AVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSN
FT                 WISDADEIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVE
FT                 AEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRL
FT                 KSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDSASREMGLIPT"
XX
SQ   Sequence 4471 BP; 1294 A; 856 C; 1144 G; 1177 T; 0 other;
     acaatccaaa aacctgatag gtcattttcg gtagttggct ttgctgctgc actgaaacca        60
     catgcttttg atggttcaaa ctataagaga tggaaagcac gtgcactatt gtggttgaca       120
     gcgatgcagt gcttctatgt ttcacggggc aaacgaagtg aaccacctct ttctcctgag       180
     gaagaggcta agttcgaggc ttcggattgc ctgttccgtg gagcattgat cagtgtactc       240
     gctgacaaca tagtggacgt gtacatgcac atgccttctg ggaaggacat gtgggatgca       300
     cttgaggcca agttcggagt ttctgacgcc ggcagtgagc tgtatgtcat ggagcagttc       360
     tatgactaca agatggtcga tgaccgttct gtagtagaac aagctcatga gattcagatg       420
     ctggctaagg aacttgagaa caacaactgt gagttgccgg acaagtttgt ggcgggtggc       480
     attattgcca aactaccacc ttcttggtcg gactttgcca cttctctaaa gcacaagaga       540
     caagagttca gtgttcctga tctcattggc tctttgggtg ttgaggagaa ggcgagggca       600
     aaggacgtcc ggggcaaaaa ggttgaggga ggttctagtg ccaatatggt acagaagaag       660
     aaccctcatg catcccacaa caacaagaaa gtcaagcctg atgtcaaacc caaggctgca       720
     accaatttta agaagaaagg caagggaaag gcaaagggag actgctttgt gtgtggcaag       780
     tctgggcatt gggccaagga ctgtcctgag cgcaaagaca ggaagtctgc caacatgatc       840
     attagcgagg gcggaggaac atcggggtac ggtaaaatat tacctacagt tctctctgtt       900
     tttcattcac ctgattggtg ggtggatact ggtgctaata ttcatgtatg tgctgacatt       960
     tctctgtttt cttcttatca ggtcgggaga ggttcctcct tgttgatggg aaacgggtcg      1020
     cttgcggctg ttcatggtgt tggtacggtc gatctgaagt ttacttcggg aaagaccgtg      1080
     cagctgaaga acgtgcagca tgtcccttca ataaagaaga atctagttag cggctctcta      1140
     ttgtgtagag aaggttttag acttgtgttt gagtccaata aatgtgtcgt atctaaatat      1200
     gggacttttg ttggaaaagg ttatgacagc ggaggcttgt tccgcttttc tttgaatgac      1260
     atgtgtaata atcataatgc tgtgaaccat attagcgaga atgatgagtc taatgtgtgg      1320
     cattcgcgac tctgtcatgt gaatttcggt tgtatgacgc gcttagctaa catgagttta      1380
     attccaaaat tcactttggt caaaggttcc aagtgccata cttgtgttca atcgaaacaa      1440
     cctcgcaagc ctcacaaggc atctgaggcg aggaatttgg cacctctaga acttgttcat      1500
     tccgatttgt gcgaaatgaa cggcgtgttg actaaagggg gaaagaaata tttcatgaca      1560
     ctgatagatg attgcactag attttgctat gtgtatctat tgaaaacaaa ggatgaggca      1620
     ttgcattact ttaaaatcta taaagctgag gtagaaaacc aacttgaaag gaaaatcaaa      1680
     cggttgaggt ctgatagagg tggggagtat ttttccaatg agtttgcatc cttttgcgaa      1740
     gagtttggaa ttattcatga gatgacgcct ccctattcac cccaatcaaa tggggtggcc      1800
     gaaagaaaga accgtactct aactgagatg gtgaatgcca tgttagacac tgcggggctt      1860
     tccaaggaat ggtggggtga ggcagttttg actgcgtgtc atgtcctgaa taaaattcca      1920
     atgaagcata aggaagtaac accattcgag gaatgggaaa ggaagaaatt aaatctctca      1980
     tacctacgaa catggggctg tttggccaag gtaaatgtac ctatagccaa aaagcggaaa      2040
     cttggaccaa aaactgttga ttgtgtgttt cttggttatg ctatccacag tgtgggttat      2100
     agattcttaa tagtaaactc tggagtaccc gacatgcatg ctggtacaat ttttgagtcc      2160
     agagatgcta cattctttga gaatgaattt cctatgaaat atacacctag cacttctagt      2220
     aaagaaactg tcatgcccca tgagcacttt gcaccgatag aacacaatga tcaaacgcct      2280
     gaggaaaatc ctgaggagga caacattgta gatactcgca agagtaagag acaaagggtt      2340
     gcaaaatcct ttggagatga ctacattgta tacctcgtgg atgacacccc aagaaccata      2400
     gaagaggcat attcatctcc tgacgctgac tactggaagg aagcagtacg cagtgaaatg      2460
     gactcgatta tgtctaatgg tacttgggaa gtcgttgagc gtccatatgg gtgcaagccc      2520
     gtaggatgca aatgggtttt caagaaaaag cttaggcctg atggtacaat cgaaaagtac      2580
     aaggcaaggc ttgtggccaa gggttatacc caaaaggaag gcgaggactt cttcgacaca      2640
     tactcaccag ttgctcgctt gaccacgatt cgagtactac ttgctctggc agcctctcat      2700
     ggtcttctcg tccatcagat ggacgttaag acagctttcc taaacggaga gctggaggag      2760
     gagatctata tggatcaacc agacgggtat gtactagaag gtcaggaggg aatggtgtgt      2820
     aaactattga aatccttgta tggcctcaag caagcaccta agcaatggca tgagaagttt      2880
     gacaccacgc ttacatctgc aggctttgtt gtgaacgaag ctgacaaatg tgtatactat      2940
     cgctatggtg ggggagaagg ggtgatcttg tgcttatatg tcgatgacat actgatcttt      3000
     gggaccagcc ttaatgtgat tgaggaggtc aaagactatc tgtccaagag ttttgaaatg      3060
     aaggatttgg gagaggctga tgttattctt aacatcaaac tacaaagagg agatgagggt      3120
     gggattacac ttgtgcaatc ccactatgtg gacaaggttt tgagtcgctt tggatatagt      3180
     gactgcaagc cagctcctac tccttatgat cccagcgtgc tattaaggaa aaaccgaaga      3240
     atagcaaggg atcaactgag atactctcaa atcattggtt cattgatgta cttggctagc      3300
     gcaacgaggc ctgacatctc atttgctgta agcaagctga gccggtttgt ctcaaatccg      3360
     ggagatgatc attggcaggc tctggaaaga gtaatgcgct atctaaaggg cactatgagc      3420
     tatggaattc actataccgg gtatccaaaa gtactagaag ggtatagtga ctcaaactgg      3480
     atatctgatg ctgatgagat aaaagccaca agtggatatg tgttcacact tggaggtggc      3540
     gctgtttcct ggaagtcttg caagcagacc atcttaacga ggtcaacaat ggaagcagaa      3600
     cttacagcac tagatactgc gacagttgag gccgagtggc ttcgtgaact cctgatggat      3660
     ttgccggtgg ttgaaaaacc agtgccagct atcctaatga actgcgataa tcaaacagtg      3720
     attattaaag tgaacagttc aaaggacaac atgaagtcat ctagacacat caagagaaga      3780
     ctgaaatctg tcagaaagca gaaaaactcc ggagtgatag cattggacta tgtccaaacg      3840
     gctagaaatc tggcagatca gtttaccaag gggctaccac gtaatgtgat agacagtgca      3900
     tcgagggaaa tgggcttgat acccacctaa ggttgcataa tagtggaaac ctgtccattg      3960
     tgatcggaga tcccgtgaat ttggatggtg aaacaaacta ttgtgtgact gagagaagag      4020
     acccttgaaa agggctcatt ttcatgatgt gcttctcttc tttcctgcat ggtaggatgg      4080
     cttatgtctt aatgtgatcc gagtggcttt tccaagcaga gatgttgacc tgcagaacat      4140
     ctcagaagga acacacctat atgagttcga ctgctagtca cagtctatga ggtttgggcg      4200
     atctctagat actcatgaaa ggcctggagt ttgacttata tgctccaaac agaggggatg      4260
     cgaacggcag cccagtacca gtcaaggttc tgagtgaaac ctgatcacac aaaacttaca      4320
     attcaaggca tagtccattg ttcagttgtg gtctgatgta gctcatttcc taggtggaag      4380
     ttcaacttaa cagtctccac caaaaccctg gtatatcaaa caggcacaac attgagaaca      4440
     tttcttatga gccttgaaat ttggtgggga t                                     4471
//
ID   SZ-44LTR    repbase; DNA   ; ORY   ; 1408 BP.
XX
AC   .
XX
DT   13-SEP-2002 (Rel. 7.08, Created)
DT   13-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   Rice long terminal repeat SZ-44LTR.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Long terminal repeat;
KW   SZ-44LTR; retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1408
RA   Jiang N., Wessler R.S.;
RT   "SZ-44LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2(8), 49-49 (2002).
XX
CC   [1] (Consensus)
XX
CC   Insertion in SZ-6.
XX
SQ   Sequence 1408 BP; 484 A; 288 C; 298 G; 338 T; 0 other;
     tgttgacgaa aaaatcgaac acactggcct gggagatctg cttagctcca atgcaggtcc        60
     aaatatgatg agatgcgggc gtgccagtca gtttgaccct acaacagaca agatatgtaa       120
     acagtagatt aaatagccga tcggctgaca agccgatgga gtagttccag ccgatagtga       180
     taatagccga tgccgatacc agccgatagt gatagggttt aagcaatcgg ctatatgtcc       240
     aatgtagata atgatataaa ggcaatcagc tgatgatgat gatgtaataa aataacaata       300
     taatccagta taaaccaatc ggctagcaat gatgtgataa ataagcaccg atccgaaggt       360
     taaagcacac atcggctaga ggtccgatgt catgaaatcc acaagattag attaaacagt       420
     gaaacctttg ttgttatcgg ctaaatctaa cttatatgta tatgcaatcc ttatgagccg       480
     atgcaacgtc cagataactc accggctgaa accccgatga aacccttatt ggcaatcaag       540
     aagaaggcta gagattatgg ttctaagcac gacttagtag atcaaacata actgatgcag       600
     cactaagtat gaaaagaaac ataatatctg gacaatcaag ccgttgactg agttttcagg       660
     gtggtagatg tctaagctaa tctaatctag caacgcgatt tagccgatac cggcagaaac       720
     cctaaagcga gaagcagcca atagagctaa attgatatgc taagactaga ttaatagaga       780
     catatgataa ataggtaggc aaatatatca tccaaaccag agcaatccaa gaggtcgaat       840
     gtactgatgc agccttgaac gacgccgacg tagatgatac aattgcctgg gctgacggaa       900
     cattggactt accccttcat cggagatcga acaccgatgc agccccgcgt caggtgccaa       960
     gtcccgccgg acgataaaat aaagtagaaa aggtaaaagg tggcgatgcg ccgaattgta      1020
     ttgatcgtag cgatagatta catagacccc ggctgtacat atttataccc atgggttgat      1080
     acaagtcctt gtcggataag aaagaaactt tcctaatgat gaaaggaaaa gataaagtcc      1140
     tgataggaca ctaaacacac tttcctaaag ataaaaggaa actaacaaac tattcctaat      1200
     taatagataa cttgccatgc tgcattctct ttgaactcgg tctcttctgg ataagcttct      1260
     tttagtagat caatttcctt aaccgaatat agcaagaatc cgacaactga cgacttgaga      1320
     actctcatcg gctaatctca ggacttcgaa gtcgatgctg actctaagcc gataactact      1380
     ctgggcttac caaatttcac tgttaaca                                         1408
//
ID   RCB11       repbase; DNA   ; ORY   ; 13978 BP.
XX
AC   AB013613;
XX
DT   08-NOV-2002 (Rel. 7.1, Created)
DT   08-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   Oryza sativa centromere repetitive sequence RCB11.
XX
KW   RCB11; Rpetitive sequence; centromere.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-13978
RA   Nonomura I.K., Kurata N.;
RT   "Organization of the 1.9-kb repeat unit RCE1 in the centromeric
RT   region of rice chromosomes.";
RL   Mol. Gen. Genet 261(1), 1-10 (1999).
XX
DR   Genbank; AB013613; Positions       1   13978.
XX
CC   misc_feature 1..13978
CC   /note="centromere sequence RCB11"
CC   repeat_unit 159..2051
CC   /note="1.9 kb direct repeat RCE1 (RCE1-1)"
CC   /rpt_type=direct
CC   repeat_unit 7186..7975
CC   /note="1.1 kb deletion
CC   1.9 kb direct repeat RCE1 (RCE1-2)"
CC   /rpt_type=direct
CC   repeat_unit 9685..11593
CC   /note="1.9 kb direct repeat RCE1 (RCE1-3)"
CC   /rpt_type=direct.
XX
SQ   Sequence 13978 BP; 3898 A; 2841 C; 3440 G; 3799 T; 0 other;
     ggatcctcgt gcttacatta attgggagct agcggttgat agtgaatttc aaaagcatgt        60
     cttgtcggag aaacaaaagg ttatgtgtgc ctctagtgtt ttaattaaac atgcttctaa       120
     tgattggaaa catctttgta ggcataacaa aataccacaa tcttggaaag acctgaaacg       180
     atatttcaga gatgtttatg ttcccatgta ttatgctgac attttgttca acaaactgca       240
     atgtttaaaa caagatacca gaactgttac ttcatactat catgatatgc aagcttgttt       300
     attacgttgt ggtttagatg aatgcgaaga agctaaagaa ttgaggtttt tatgtgggct       360
     taacaaagaa attcaggaca tgcttgattg tcaaagatat acatctcttt ctcatttgtt       420
     acaacttgct tgcaatgctg aaagtaaaat agaggaggac atgaagaagc aacatgctat       480
     gtttttgtct tctattacta accatttgca ggaagtgcat aatcatgaaa aggaggagag       540
     agacatgaaa gagccgccag tcccattgat cacactcaaa gtcgaggcac ctccattatc       600
     taaagagggc atcaaaggta aacttaatgg tgctgaaatt aataaaggtg agtgtgttgt       660
     taatgaattg aatttgtcca cttttcatgc tatagcagag caaccattag tggaaccaac       720
     tgctgagatt cctttgtcac aaattgattt gtttgctgtt ccttgtgata aagaagagtt       780
     atgcgataat gcttcactta tatccatgcc acaacttgtg aatgaacatg ctattcctac       840
     tgttaattca tactgcactg attttaagca tgttgttcac attgctaatg aagtagagga       900
     gcgtgaattg agatcttctt taaatacttt gggctatgtt cagtttgatg atttttgtga       960
     gctcgataat ttcaaggaga aattatttgc taagtctgat ttgccatatc caaccaatgt      1020
     tatatttcac atctttggtg aatataatga tcttggaata tattttgtgc atagagttta      1080
     catctgctcg gatttagaac ctcctgtaca tgtggataaa atatgcaagc tagagaaaaa      1140
     tgttattgct aaccaaattg tctcgagttt gccttgtttt gattggaaga aacaggttgt      1200
     tgtaaatgga ctacgcaaag agcaccatat ggaaaaaccg aggacggttt tccgtgaaga      1260
     aggagaggat gatctgacca tggctaccac ggatgcaacc attgctcaca tcatggatga      1320
     acaagaagat atcgagatca agtactccaa gtgctggaat ccgattcggc cacctactac      1380
     actgctgact tcaaacggcc accgaatctg catacgacct ccgttttcgg cccgtgagta      1440
     cttgatggaa agctctcgga gccctctttc taacggatcc agcctcttct ctgaattcta      1500
     tctcgtgtgg ccagaatcac aggaacaagg tgttgcatca cctataatgg gcctatgggc      1560
     ttgtaacttc atttgggacc ccggcccagg tggggcccat gtggggtgcg ccccaagctg      1620
     gtggagcacg accctaggca cccaccccta tatatagcta gttacccctt cagggtttct      1680
     cgggtttttg ttagattaaa gtttagccat tcctacttac ttgcagcgcg cgtgtcggct      1740
     agaccgtccg tctgcttgtt cttcggaacc ccaacttatc atttgtatta aattcctatt      1800
     tgcaatatca gattgctttt atcttgttct tgcttgtttc tttgatttgc ttgcaggaat      1860
     agggttgatc tgcaccggca agatcagcaa cccacggaga ggtgtatcga tcgctaaggc      1920
     gcaacacaac gtctcgtacg gttgtagtcg gatcgtcaac gtttctccca aatcgtagtt      1980
     atcacaactc accgaaagat cgggccaaca atagccttga gtgtcgagag gaactcaggg      2040
     ttcatcactt tgtctaggca ctatacttta ttgtcccaac ttgattgtcg gatttttgga      2100
     cttgaatcaa ttaaagaaca atatgcgctt catcctgatt ttaatgaagt gatgttaaat      2160
     tgcaaagagg gacgtacttg gaacaaattt gtgatcaatg gtgcatttgt ttatagagct      2220
     aaccgtctat gcattccagt tggttccgtt cgtcttttgt tgatacagga agcgcatgga      2280
     ggagggttga tgggacattt tggagctaag aagatggaag atgttttggc cttgcatttc      2340
     ttttgaccaa ggatgagaaa agatgttgag aggttcgtgg cacgttgcac cacttgtcag      2400
     aaagctcagt ctcgtttgaa tccacatggt ttgtatatgc ctcttcctgt accttctatt      2460
     ccttgggcat atatttctat ggactttatt ttgggattgc ctagaactaa gagggggagg      2520
     gatagcattt ttgttgtggt gaatcgtttt tctaagatgg cacattttat accatgtcat      2580
     aaaagtgatg atgatgttca tattgctgat ctgtttttcc atgagattgt tcgcttgcat      2640
     ggtatgcctt ctactattgt ttcagatcgt gatgcaaaat tcttaagtca tttttggtgc      2700
     acgctatgga acaagttggg tacaaagcta ttgttttcta caacatgtca ccgacaaaca      2760
     gatggacaaa cggaggtaat caaccgcact ttgggtacca tgttgagggc tattttgaag      2820
     aaaaaattga tgatgtggga agaatgtttg cctcatgtgg agcttgcata gagtcgggca      2880
     acacattcta ctaccaagtt aagtcctttt caggtagtgt atggtttcaa ccctaatgct      2940
     cctattgata ttttgccttt acctactagt gagagggttc ataatgatgc taaggcacgc      3000
     gctgaattta ttttgaaaat gcatgagtca accaagctca acattgaaaa gatgactgaa      3060
     aagtatagaa ttgctgatag taaaggtagg caagaggtta agcttgaacc gggtggttta      3120
     gtttggttgc acttgagaaa ggatagattt ccggaattga gaaagtctaa gttgatgcct      3180
     cgtgctgatg gtccttttaa aattgttgag aagatgaatg ataatgcata taaacttgag      3240
     ttgcctcccg agtttggggt tagtcccacg tttaacattt cagatttgaa gccatacttg      3300
     ggagaagagg atgagcttga gtcgaggatg acttcaattc aagaggggga ggatgatgcg      3360
     aacatcacta cctcggatac acacatcaat cctccaacgg tcattcaagg accgataaca      3420
     agtgctcgtg tgcgacaatt aaatttagag gtgagctcgt tcctatgttc ttctttgtat      3480
     gaattcgaga atagattgct acctaatgat tatattgtga ttaggaacaa tggaggggac      3540
     aaggtgtcgc aactgagaaa attacctttt cccgaacgct agtgtattaa tccccgtccc      3600
     aggaaaagcc ggggtacacc acacaaacat gatacaaaag gcacatcttt attatatcga      3660
     taatatttac attattacaa aggcacttca ggcctgacat ataaaaataa atagcagcgg      3720
     actagcggcc tacggctcca tcttcacagg cgctcaactg gggtataagc cagaactcca      3780
     cctaggactt cttctccaaa gcttctctta ctgaaggggg gggggaaaga tagagcaaga      3840
     atgagtacaa ccacagtact cagcaagcca caccggtaga tgcatgatta atgcaagggg      3900
     gtacaagggg taataatata ggggttaaat tttgcagtaa acagcattta aaagacacgt      3960
     agttgctcaa agctactttg tacacacgat cctagagcta cacaatattt attaaacaag      4020
     gccgtgaacc cacacgaacc cgccttaacc caaggcctac aatgattcag accgaactgg      4080
     caacccgacc ctgggtccca gctcgtccca agccaaccca ggccaaccat tccacatttt      4140
     agttgttaag caggttttaa gaattaaaac actaacttgg gtacattgct aggcttgccc      4200
     atatccgagg gcgcggctat tcgaatagat ttactctgat cagaggtgta catctttacc      4260
     cacaagacac atcttcctca cgtgtaacca cgtgccacat accaccacgg catacggacg      4320
     aaagacgtga catagttccc aacccatcct agccataaac aagagtatcg acccaacccc      4380
     ctacggccag aacccccggg ataggtaggt aggattgagc ccctagcagc aggacaccag      4440
     ccctgtgcca tgacatctcg actaccggga cgcagctcgt gtagccttca tctatcctag      4500
     agatgtccat cgacccccga attcgtcaat ctccatccgt gtacctttgt ttataaccag      4560
     actgagccac aaactgagcc ttacccacta gatatgtgga agtacggtag tgctttgcaa      4620
     cagaggcccg agcttaatcc ttatagtggc cggggtgcta cttcccacaa ctggcatgca      4680
     cccaaacccc accggaaaac aggttttagg ggttttgaaa gaggaagaga ggtgtatgtc      4740
     ctattccacc ataatccaac cattccaaag tgtccaagtg atatgagaat tcccaaagtc      4800
     taaagttata aaaccaccta atgttgccta attaaccagc gcagcatcta cctaagttca      4860
     tactagtgga accataaata gagtacccac tagttggggt tttattttcc tagggtgaac      4920
     aaggtaataa taacaatagc aataataata aggccataag aaaggtaaat aggcatggct      4980
     aaataaaaca gtgataacgc gggaatttac ataaagcgat aatgcattaa tttaaatcaa      5040
     aataatttta taaactggga ttcaatatgc tcaaggatga tgtgacttgc cttgctcaaa      5100
     gagaatggcc ttccgaactt cggcgatgac cacgaaccac gcttcgggaa cctccagaac      5160
     gacgaaagta cgcgaagcac acaagcaaag ctacaagcct ataaagaagc aataacaata      5220
     cataaaaaga aagcacatgg ttctttaggt tataacaaac attaggagac ttgaacgggt      5280
     cgattcggag ttcgtatgac caagatatga tcatccgaag tttaatgctg ttacatggag      5340
     atttacggat tattataatt aggttttaca actataaaac atgtgaaagc gctagcctgg      5400
     aaaagacagg aaggctgtgc tgttgacatg cggaccccac atgtcaacct aaaggaccac      5460
     ggtagaccga gtacacggag acggtctacg ggtcgacgga agcagacgct gtgtgtcaac      5520
     cgaggcgagt ggccgacaaa cggactccac tagacaccac gcgggctgca cacgtggaaa      5580
     caacgcggct accgagcggg cacactaaca cggtcaccac acgcacacac gaacgactac      5640
     cgacaccggt acacgggtac cggggccgac aaccgcacaa cgggcacggg cgacaccgaa      5700
     aggacgagga cggggcagcg agggagaggg atccttacca ccatgcgacg aggcgtggga      5760
     acgacaacga cgaacgggcg cggcggagac ggacgagaac gacggagacg aacggcgagg      5820
     ggacgacttc ggcggcgatc cttggacgaa ggcgagacgc ggccggcaca aggcttgacg      5880
     acgcggagcc gaggacgaag acgagaacgg cttgacggag ggacgaacac cacgatgatg      5940
     aggacgacga ccgggaccgg cgaggaggcg acgagggcag ccggcagcag ctgcacggag      6000
     acgaggacgg cgtgggacac gacggaggtg gcacaacgag atgacgagcc agcgaggagg      6060
     aacgaccgac cagaggagtc gtcgacgagt acgaacggag atgacgacaa cgaacaccga      6120
     caaggctcgg gtggagggga ggcgaggccg agggcgacct tgccgctgcg atgccggaag      6180
     tggtggtggc gcggccgacg gcgcacgggt ggaggaaggg ccgaccgggg aaattccggc      6240
     gaggcggatg gagaggccgg cgcggcacgg cagtgttccg gcgaaatcga agggcaggcc      6300
     ggggtagagg gcgatgtggc gacgtcgagg gaggatggcg acgacgacag ccgccgcacc      6360
     ggcgaggtgg cacaggcggc tggaggcggt ggagtggtgg cgacatcact ggtcgtcggc      6420
     gaggaggtgg ctccgatgtt ttccctgcga aacggaggcg acgccgggga agaggaggcg      6480
     gctgctacac cggggaaggc gactgcacgg ccgaccggcg tgctgacact gcggcagggg      6540
     cggttggagg tggccggcgc tcggagagag agagggagga ggcggggagg ggtggtgcgg      6600
     ccacgggaag acgcgggagg aggctaaaac gatagaacgg agggaggatg ctccatttta      6660
     taggcgcggg gagggagccg ggcatgggag agggcggaac ggcgatggga aacacggccg      6720
     gtggccatgg aaagaggttg gaaagtccgc ggccgttccg ggcgatggac ggcgccattc      6780
     aagcggaaaa ttagggggaa ttgaagagga aggaatgggg attaattccc tccaattaat      6840
     ttggaaagaa tggttggatt tttcgggaaa tggcgctagg gttttttggg agagagagag      6900
     gaggccgggc ggctggagga agaagacgac gaccgccgcg tgtgccccac gcgggcgcgc      6960
     ggtcagccgc gtgcaacgcg cgtgcgtacg cgggagggga gcggctcggg tagggggggc      7020
     gcggcttggg ccgggcgatc ggcccaggag gagaggaggg agaggtggcc cgggggagag      7080
     agggaggagg agggagctgg gccgatggga aggagggagg ggcagcccaa gagagagaga      7140
     gggaaggaaa aagagaggga gaagatggag acttgggccg caggctgatg tgaccatggc      7200
     tactatggat acgaccattg ctcacatcat gaatcaacaa gaagacatca agatcaagtc      7260
     ctccatgtgc tgcaatctga ttcggccacg tgttacattg ctgacttcaa acggccgcca      7320
     aatctacata cgtgcttcgt tttgggcccg tgagtacttg atggaaagct ctcgaagtcc      7380
     tccttccaac ggatccagca tcatctcgga aatctatctc gtttggccgc aatcacaaaa      7440
     gcaaggtgct gcgtctcctg tattgggcca atgggcttgt aactttgttt gggaccctgg      7500
     cccatgtggg gcccatgtgg ggtgcgcccc aatctggtgg agcacgaccc ttggaccctc      7560
     ttggtcgtcc tcccacctct ataaatagta ggtacccctt cagggtttct tgggttttgt      7620
     tagattaaag tttagccatt gctacttgct tgcagcgcgc gtgtcggcta gaccgtccgt      7680
     ctgcttgttc ttcggaaccc caacttatca tttgtattaa attcctattt gcaatatcag      7740
     attgctttta tcttgttctt gcttctttct tcgatttgct tgcaggaata gggttgatct      7800
     gcaccggcaa gatcagcaac ccacggagag gtgtatcgat cgctaaggcg caacacaacg      7860
     tctcgtacgg ttgtagtcgg atcgtcaacg tttctcccaa atcgtagtta tcacaactca      7920
     ccgaaagatc gggccaacaa cagccttgag tgtcgagagg aactcagggt tcatcaggtg      7980
     gtatcagagc ttttgttgct cggtgagttt ttatcttcct ataaccagaa aatagccata      8040
     caaaaaaaat tcgtatcatt tacctagcca tactgtgcca ttgcattgtt cttttcagtt      8100
     tttgctttgt tgaattttgt gttgcattgt cacgtcgtgt tgctggtctt agcgtctagt      8160
     tcgtttagag tttcgagttc tggtcacgtt ttgtaccaca gtcgtagctg ccaccgtgtc      8220
     tctgttgttg tcgggaccta cgaaaacgga atcggctcgc tgccacggtt ctatttttgt      8280
     agttttcaga agtttctgtc ggttagtttt ggagttcttg agttgcatct agtgtttgcc      8340
     gatccttgtg tgtgtttgtt ttggccgtgc ctgtgtcgtg cacgagagga ggaaggtgaa      8400
     ttaccatatc tgattttgga agtagtcaag tttgttttgg aaagatatag tagattggat      8460
     tggttaaaaa tcagtttcct ttttatccca tacaccaaat tcggctgcca tccactccac      8520
     ctcctggccg agtcccagtc gcccctttgg ccgagtccga ctccctccct ctcttccacc      8580
     gttccgagtt gtgtcaaaca ccttggcgaa tttttgtttg gtgtcggttt cgagatctgt      8640
     ttggaaaaac ggaaccggca taaattcagc attccatttt ttgtataatt ataattttgg      8700
     gtttagactt ttacatttga gtccctataa attttatatt tatgtttgag tccctgtaat      8760
     cttacattaa ggtccttgag tcagtttttg ttaaaaaaaa taagaaaaaa agtgagaaaa      8820
     aaaaaggcag aaaggtgcaa aaaaaaaaga aaaaaaaagc cgcaccaaaa aaaaatcaga      8880
     aaagaaaagg aaaaaaaaga aaagaagaaa gaagaaagaa agaaaagaga aaatattgtt      8940
     ttgtttgagc tgaacttcat acatcagagt gtgcttgagt tgtttctggt gctattttgt      9000
     ggtaccgttt gtgtctaggc tcgcgtctct agtacgttct agcctaggac cagcacggta      9060
     cttgactttg aacaattatt caactttgcg ttctctgatt tgagcatttg ctattccttt      9120
     gctacatatt taagcctacc cagagctcca cagatttgat tgcagccgta cagcaagtgt      9180
     ttgccgaggc atcgatatat ccaacctcta ttggggtgct tggttgagtc ggtgtacatc      9240
     accattccac ttgcattggt aagatcttgt aagagcttgg ttaaaagctt gagtgtgtgt      9300
     gagatttgag ctgccagtac ctagtagttg ataggagcgt gtatattctt gtgtatgttt      9360
     cttgtttgct gctacccatg gcaggattgc gcaaggggaa acaagatggt catgctcaac      9420
     gtcaacatct acaccttcga cgagatatga cgacttcttc acgtgatgca tatgaggtac      9480
     atgactataa ttttgcacaa gttgcatgta agttaccagt ctatgatgga aagtatgatt      9540
     ccgctgcata cattaattgg gagctagcag tagaaaaaca atttgatgag tatgattttt      9600
     ctaatgctca aatgattaag gctgctagta ataagtgtgc cggttctgca tctttttggt      9660
     ggcatactgt ggggaataag cttgaaactt gggatgaatg caaaatactg atgagaaaaa      9720
     gatttatgtt ttcatactat agacgtgctc tccttgagaa atgggaacat ctaaaacaag      9780
     gtgacaaaac tgttagggag tactttcatg attttaaaat ttgtatcact tatagtggtt      9840
     tacaagaatc taatgagaac acaatgacta gatttttcag agggcttaat ttcaatattc      9900
     aggctgggct tgttaatgtg acatataatc atataggcca attgttcatg ctcgcttgca      9960
     ttgttgagcg caaaattttg gagaatccaa tggagcaaca agatatgctt gtgcctccta     10020
     tcactgatgt tttgcaggaa gttcagaaaa gtctccaaaa tgagaagaac gatatgtttg     10080
     agatgtcact tccatcactc gcgaatgagg agaaggctga tgcagctaca ttatctgaag     10140
     aaagttcgca aggtaaatta aatggtgctg agagaaatga aggtgagtat tctcaaggtg     10200
     agctacactt gtccactttt catgctatag tagagcaacc attagtggaa tcaattactg     10260
     agttgccttt gtcacaagtg atttacttgc tgttccttgt gataaagaag agttgtgtga     10320
     taatgtttca cttatatcca tgccacaact agtgaatgaa catgttagtt ctactatttc     10380
     tttgtgtgct gattctaagc atgttgttca cattgctaat gaagtagagg aacgcgaatt     10440
     gctatcttct ttaaatactt tgggctatgt tcagtttgat gatttttgtg agcttgataa     10500
     tttgaaggag aaattatttg ctaaatctga tatgccatgt ccaactaatg ctatttttca     10560
     tatctttggc gaatataatg atagaggaat atttttggtg catagagttt acatttgttc     10620
     agatttagaa catcttgtag ttccggataa aatatgcaag ctagagagac atgttactgc     10680
     taatcatatt gtctcgagtt tgtcttgttt tgattgcaag aaacaggttg ttttcagtgg     10740
     actgcgcgaa gagcaccata tggaaaaacc gaggacgttt ttctgtgaag aaggggagga     10800
     tgatgtgacc atggctacta tggatacgac cattgctcat atcatgaatc aacaagaaga     10860
     catcaagatc aagtcctcca tgtgctgcaa tctgattcgg ccacgtgtta cattgctgac     10920
     ttcaaacggc cgccaaatct acatacgtct ccgttttggg cccgtgagta cttgatggaa     10980
     agctctcgaa gtcctccttc caacggatcc agcctcatct cggaaatcta tctcgtttgg     11040
     ccgcaatcac aaaagcaagg tactgcgtct cctgtattgg gccaatgggc ttgtaacttt     11100
     gtttgggacc ctggcccatg tggggcccat gtggggtgcg ccccaatctg gtggagcacg     11160
     acccttggac cctcttggtc gtcctcccac ctctataaat agttaggtac cccttcaggg     11220
     tttctggggt tttgttagat taaagtttag ccattgctac ttgcttgcag cacgcgtgtc     11280
     ggctagaccg tccgtctgct tgttcttcag aaccccaact tatcatttgt attaaattcc     11340
     tatttgcaat attagattgc ttttatcttg ttcttgcttg tttcttcgat ttgcttgcag     11400
     gaatagggtt gatctgcact ggcaagatca gcaacccacg gagaggtgta tcgatcgcta     11460
     aggcgcaaca caacgtctcg tacggttgta gtcggatcgt caacgtttct cccaaatcgt     11520
     agttatcaca actcaccgaa agatcgggcc aacaacagcc ttgagtgtcg agaggaactc     11580
     agggttcatt acaggccgag ggagagagag ggaggacttt gggctgggct cggcccaaag     11640
     gaggaaggag ggtttatttt tagtttttct ttttagtaaa ctttgataat tgttattgtt     11700
     gcttaataaa tattttcggt gctctgaaaa ttcaagtaaa atttgagggc tctttttaga     11760
     ccaagaagaa tttgacaaaa tttctccggg ccacattcga atttttcttg tacatatttt     11820
     agtgtttgcc aatttcattt cgaattttaa ttaattctat tattcctttt agagaatgat     11880
     ttttaattcg ggatgaattt atcaggacgt gacacaagga gacacttgga gaaggactta     11940
     gagccatgga ggatcatcga ggacgtccaa gtcaaggtag tggcccaaac caattcgacc     12000
     tcgggtgcaa ttcggatacc aggaccagtc tgcactaaaa cgggagccta ggtcgcatac     12060
     gtgctcggat tggggcattc tttatatgga tggaaagcta agaagataac ctttccaatg     12120
     gttttggtcc cacatccaaa ttatttccga gtcaatggga atcgaccaaa caagttgaca     12180
     ttcagaattt gttccggtgc tgcgtcaccg tatttgggcc tttgggccgt gtatcgtgct     12240
     ggaacccagt agggttgcgt cgagagtggg ttgcacgacc ctaaactcta tatatcagta     12300
     ccaccaccat ctttaggttt ttggggtttg cttagattaa tctgtcgagg acagtttcat     12360
     cgctagatcg gtttgtaaga ccccaactcg tgagcttaat cattcatctg caattttggt     12420
     tgttttctat ttctctcttg tttttgttct tcgattggca aactgccggg tcccaaaact     12480
     aatgatttgg taaccgacat gttaaaactg tatcaagccc tggatcagta gattgataca     12540
     agttcaatat tttggatcgt ctttgcttac gtttagacat agctttgaag gagatattat     12600
     tacataaagt aatagggtat ttacaagatt gtggttaact attacagcag aagctttaga     12660
     atggcctaac tctgttgttt tgctatagac ttaaaccatc tatctaatct agacttgaga     12720
     attaggttga aatgaaacta acttatatga ttgaactccc agcttcggca caaactccaa     12780
     atgaactctg aaaaaggggg ttgaagcaag ggtgagtaca acgtactcag caagctatta     12840
     tatttaatca acaatgaatg tatgaaataa taatatctgt gtaaagctag gtttacttgc     12900
     aaaaagcaga gaatgtagaa gtagaaaacc tgtaatgttt taaatgcagc agtatttaat     12960
     aaaatttcaa attaggtttc tatccaagat gccatagtga gtcccaatgc tcgataaccg     13020
     cgagcacggc tatttgaata gttttgagga tattcatact acagtagatg tacgctttac     13080
     ccgcaatcca tgacgtgcca aacacattag ccttgtcatg gcaaagcttt tcagttacta     13140
     acatcagtgg tacctgttcc atgaactcta gtccccatgc actctgaacg taacgttatc     13200
     agcagcgaga ggagttctgg cgttcccgag ggctttagag agaactgatt gtatgacacc     13260
     atgtcatcgc aatcagggtt cacaaacaat ttgtgcacaa ttcatttcat atatttacct     13320
     gcgcctcggt aaatatcaca attgcccttc gcggcataaa tttgcctcct gcacgaggac     13380
     ttaagaagaa ccactataca gaggtaccac ttttgctaga taacttaatc agctaggtct     13440
     atgcccatac gagaattgcg gtcgtactca tatgttcttc acatgtactt ggcagtctta     13500
     tatcggttgg aacagtacta gccacccgga aatcaaccat ttctaccgta ctgtcccaat     13560
     ctaagttcat tatattttat gcattctaac taggcagggc taagcaaaag ctagcatata     13620
     tctggtttgc tatatattca ggttatgcat tcaaaatcat gtatggccaa tgcacaagat     13680
     actggagata tagaatatag gattattatg ctcaaatggg aggaataata acttgccttg     13740
     ctccaacgca aacaaatctg agataggcaa cctgattatc cgatcctcga aacaccacag     13800
     gttgccatcc aaaagataat agactctact aagaaagacg aagaaccaaa ttcaataaaa     13860
     atcatgaaat agcaagaaag tgataaacag caagaagggc taggcttggg gtataaatat     13920
     ctctgttaaa ggcgtatagg attctaaagg gttggaggct aaggtggaga ggggatcc       13978
//
ID   GYPSY-B     repbase; DNA   ; ORY   ; 7067 BP.
XX
AC   AF172282;
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice gypsy-type retrotransposon GYPSY-B.
XX
KW   LTR retrotransposon; GYPSY superfamily; GYPSY-B.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-7067
RA   Tarchini R., Biddle P., Wineland R., Tingey S., Rafalski A.;
RT   "The complete sequence of 340 kb of DNA around the rice Adh1-adh2
RT   region reveals interrupted colinearity with maize chromosome 4.";
RL   Plant Cell 12(3), 381-391 (2000).
XX
DR   Genbank; AF172282; Positions  173805  180871.
XX
SQ   Sequence 7067 BP; 1993 A; 1371 C; 1627 G; 2076 T; 0 other;
     tgtttacacc caaatttggc acctatggac gaaatagcga aaaattgcca aagtttggaa        60
     agtgccgggt ttccttcaca gggccggtca gaccacaggt atgtgggcgg tctgaccggc       120
     tagtagggcc ggtctgaccg caggtatgta ggcggtcaga ccgtcagggt tcgagtccga       180
     atctgttttc gtcgggtctc gggtttcctt gctcgggaag gcatgtttcg tgtttccatt       240
     ggtttctatc ccgaattgga cgtggaggag ggcctgtaga gggcaagacc aacccctata       300
     taagggacaa ggccggttca ttgtaaaacc accgaataca atctacttga atcgttcttt       360
     tactatgttt tctattttac cctagtttag tccatctttg tcggtttgcg ccgtaaaccg       420
     ttcgccgccg ctgcgagagt gcgacacttc tttgtaggtt tgtcctggaa accttccgtt       480
     ttgcccacga tacgggtagt tatcatcata tcgatctaaa tcggcgtaga tgctgatttt       540
     gatctctaaa tcggctccgc tagccggttt agttgttttt ctacaaaacc catcttgatt       600
     tggtcgcttg gctagatcga ggtggttggc gactccatat caccacaagg cgtttaggtg       660
     ttacgatcgt gtttgtcgac ttgtcacgaa aagttgccaa cacgattttt ggtgactccg       720
     ctggggattt tatctattcg gctatattac ggccgaattt ggtttactcc agtcgtttcg       780
     tcgaatcagt ttcggccaaa cggctgaaat tagtctgcac tttaattgct attgccgctg       840
     cattggtttt attaccagat taatctattc ggcggtgaag ttatttggac gtccctgaat       900
     ccatctgagt actcgccatc cagtacgccg tgtgtaccga ggatcatcat caggaggcaa       960
     cagccggttc ggtaacctcg tttccttttg tttcacacgg cgacagagaa aagatcaggc      1020
     tattagagcc gatctaccgg gagacaagca gcaggagctt tgcttctttt tattactgtg      1080
     cacgtgttaa aaaaaagatc aggctatcaa gccgatctat tactgttcgc ataaagaaaa      1140
     aatcaaagcc gattcaattt gcatcggcta tcaccaggaa gtttcagttt ttgtaaattt      1200
     gctacataca cacagtaaca taccgacaga aatcaagacc gtatattaat ctattcggtc      1260
     aaatatttcg gctatgagct atatggccgt atttaatcaa ggaatttctt catcaactat      1320
     gacgagcggg aacgggttca acaatattgc tacacaatac attaggaccg atcaaggcgt      1380
     catgagagga aacgtcccgc tacctcaagt tgtaatttca ccaaaggtaa ccttcgattc      1440
     gcccaacccg tcctttgcta ttcaaaatgt taataatcat tgtgtagatg catatgctac      1500
     ttctagtttt gctcctatac aatatgctta taatactatg ggagggtcaa cgggtgttta      1560
     tacggctgat tacacgggaa tcggctatat gcaaaaccta gctaacggta tgaccggtcg      1620
     tgacaccggt ctaaccgcac cctatgccgg tcagatcatg cctaccatag ccggtcagac      1680
     tgtgccctat cttggccaga tcgcgcctcc tgtggccggt ctgaccgcac cactgaccac      1740
     cggtcagacc gggccatggg ccggtcagac cggttctctg ggagtttctt caggttttca      1800
     taccacgact agcagtactg attttaatta ttattcatca cctgttaata ctgttagtca      1860
     tgctactcta catatctcta atgcttacaa tgatcctaat agaggatatt ctcatgacac      1920
     taggtatggc caatataatt atattgcgct gcaacaacca ccccttcaaa tacaccacca      1980
     aatcaacaaa ggcctgaaac tatggaggat tggattggag atattattag ggaaagtttt      2040
     agaaaaaatg atcttagtaa tttgacatcg gttaggcaaa aatacaatga acctgtcatt      2100
     gattatatca agagatttag agatgttaga aaccgatgtt atagcttgaa aataactgac      2160
     aaagatttgg ccaacattgc atatgatgga ttgcttgatt ctattaaaga gagattgaat      2220
     ggccagatat ttcttgatgt tgatcatgtg ttgcatgaag ctctggctca ggaaagccga      2280
     gtggatgaca atagtttaaa tgccacctta gatgatagtg caatatcatg tatagccgaa      2340
     ccaaacgatg gttcggattg tggtaataat ttgtgcaatg atgtcgtaac gagtatagcc      2400
     gaaccaaatg ttgatttgga ttgtcttact agtttggatg ataacgcaat aaccaatata      2460
     gccgaaccaa gtgttggttc ggattgtgtt actagtttag acaatgatgg aatagtcgaa      2520
     ccaagtaatg gttcggattg tgttactagc ttagagaata atgccattga agatatagcc      2580
     gaactaaatg acagttcgga ttgtatcaca agcgaaagtg aaatagcatt gtcacctaag      2640
     accgagtcac aaatcggtca tgtggatgtt ggaaaagatg atgacaatgt cttgcgggat      2700
     agtagtgaaa tagaatccaa agtagccatg catatatatt aaaggccgta tcctgaacat      2760
     gtagattcgg ttccataccc gcaaggattt gaagtgccca acttcacgaa attcacaggt      2820
     gaggatgcta taacaacaat ggaacatatc ggccaattta ttgaacaatg tggtaaagcc      2880
     ggtagtgatg atttgcttaa gttgaagttg tttccccttt ccttgtcaaa ctttgcatct      2940
     acatgtatag tttacttgct cctagttcaa tttctacatg gtcacgaatg gagcatgagt      3000
     ttcatgatta tttcaaagat gcaagcttga tggagcaaag accgattgat acttcatcgg      3060
     tcacttatga aactatttcg gttacaccta tgcctaagac cggaattgtt agtaattctc      3120
     tccctactag ttctattgat gtcgataaaa agaaagggaa aagtgttatt attggagatc      3180
     ctcggcccaa gaataggatc aaaaatgtga aggccgaaga ttataaagtt gcaaaggatg      3240
     agtcatctag tttccaaagg gccaaaaagc cgaagctcac ttttgagatg cttatggcta      3300
     agtacaagaa aggattagcc ggtcaacgat ttgataatca aactagtgat tcaaaaagac      3360
     caagatcatc tcgtaggaag agatttggtc aaacaccaaa gcaatcggag ccatcaacta      3420
     tactaactcc atataaaccc ctggttgtga tgccatagta tccatatcca atgtcactat      3480
     atggttatcc ttttatgtat tacatgccgt cgatgcctca accacctatg ccgtatcatc      3540
     aagaatggaa gcaattacct aggacaatac caagtcattt taactcaaga caagaccgtt      3600
     tcccacaaaa gaatcggtct ggtggatcaa aagtgaaaaa ggtgaagaag gtgtgggaga      3660
     ggaaagaagc caaagctccg aaggtcgtta ctattaagga gtctcaagat gttcaagtac      3720
     ctactggaga tgcggcgaaa actatacaag cggagaagac tgaagctgac gccattactg      3780
     tcaacatcgg cggcctgacc aaaacagctg gccggtctaa ccgtcagaca acagccggtc      3840
     tgaccgaccc tcctggacga tctgaccgac ggcttgcagc cggtctgacc aggcccagag      3900
     gccgatcaga ccgaggggca ttaaggtgag cgggaaaatt gagagcaaca tgggagcttc      3960
     tacttcgatc aaaaatatta agaatcattg tttagctcct ggaaaactac cacagccgaa      4020
     gtggacacct tctggcttat ctcgctctca aaagaggagg ttacagcgtc tttgagccat      4080
     aggtcaaaaa gaaaatgagg ccgaagatgt aaagaacaaa acatgtaata atttagagcc      4140
     tcgaacagca cctaggcaag tgtggagacc caaagaggta aaagttaaga gaccggtgat      4200
     ttcccatagt agagataaat ccaatttgat gatagaagaa tcatcggtca ttagaaataa      4260
     gtctccttca catgatgctg tggatgttgg tgcggtgttc gtcttgcctt ctaaatcatg      4320
     cagtcaagaa aaccgatttt gcttgggggg caagacatta ttatgcttat aagggaacca      4380
     agagaagatg aacggcaatg gatacaacat cacatctttg agccgccgtt tgttggatgc      4440
     taaggcaagg tatgggttta ttgtgctcat catcatatta tatgcctatg ccatgttaga      4500
     acattgctta ctatctagca catgtgtgtt cttgcttatc gaattgatat tatacataca      4560
     tgttgcaaat gccagttcta agtagtggaa ttggtaggtt ggcatataat ttgtttgaag      4620
     tgtgatttgg cttatgagtc gttgatattt atttaaagcc aaatcgtata tgtttttatg      4680
     gatcaccata taatatatag atttcataat tattgcacca taaaagtttt gtttattagt      4740
     aattcggcta atgtcaatgg tcaatgtgat gatttgcttt agagttgttt tctttaggaa      4800
     cattggcatt gttaatattt tgcatacatg ctcaagccga ttacttatat ttgtagttta      4860
     ttggaatcta tacatgtgac acatatgact ttggtgattc attattgatc atacttcaat      4920
     tggctaagtg ttttgatgcc atgatgatta ttgtttcaaa agccatttga attggtattc      4980
     atctatacat attagttgga tattataatt tttcatatgt atagagagga gggattttgg      5040
     tctaatattt tgatacacca agcatctggt tataatatga agaaatgagt atttttgata      5100
     ctagaaaagc cggtgcttga tttttaagtc tttggatgaa attgacaaaa tcacatatca      5160
     ggggcagttt gaccggcatt gcatggccgg tctgaccggt ggtgacctgc ggtctgaccg      5220
     gctctgcatg gccggtctga ccggacagac agggtggtct gactggcatt gcatggccgg      5280
     tctgaccgat cccagacagg aggctggggg gcacgttaca attgattaaa aggccgaatt      5340
     aattgtgaat tcggacattt gtgcccatga gttagaagta gcttggagaa ttcctttgat      5400
     tagatatttg aaagatccta cacttaaggt tgatcggaag attcggcgcc aagcgctcaa      5460
     atattatatc gccgaaaaat agatggagta ttacttagat aatgatcaat ctaaagttgc      5520
     taggagagta gtacatgaag ggatttgtaa aattcatcaa tcggcccgta cgataaattg      5580
     gttgcttagg agagtggggt ttcattggcc gaaactaatt gatgattgtt tcaaatgtta      5640
     tagagggagt gaagcttgtt aactgatcgg caatgttcaa ttagcgcatg ccattatatt      5700
     gaatcctatc atcaaaccat agccgttcca aggttgggct ttggatttca ttggtcaaat      5760
     ttatccttcg tcatcaaaag ggcattggtt cgtgctagtt gcaatggatt acttcactaa      5820
     gtggaccgaa gccatgccgc tcgagaatat tacttgtacg gaggtaattg actttatttt      5880
     gaagcatatt gttcatagat ttggtattcc tcaaacgtta aaggagcttc tttacgtcca      5940
     aggaaatgag aagttttgcc aaatcttatg atattaagtt gttgagtttt ctttactacg      6000
     ctcaggctaa tggataagcc gagtaataaa acattattga aattgttgtt ttgccagttg      6060
     gtaaatcttg gctctcttcg gtatttcaag caagatgact tgtcgattga agattacaag      6120
     accttgatgg ggagcaattt tgaagacgtc atcgacaagc gtttgaagac tttgaaggag      6180
     atgaagacac ttcaagacgg tgttttcaga gagcaattaa tgggagatag cttgaagaaa      6240
     tacttcccga gcatttggta agatgcttag gaagtcctat ggccgataat tgaattatcg      6300
     ccctgagata acatgttcta tgcttttagg ttcacgtatg ttcaccaaaa aggcagggga      6360
     gcatgtgttt acacccaaat ttggcaccta tggacgaaat agggaaaaat ttccaatgtt      6420
     tggaaagtgc cgggtttcct tcacagggcc ggtcagacca caggtatgtg ggcggtctga      6480
     ccggctagta gggccggtct gaccgcaggt atgtgggcgg tcagaccgtc agggtccgag      6540
     tccgagtctg ttttcgttgg gtctcgggtt tccttgctcg ggaaggcatg tttcatgttt      6600
     ccattggttt ctatcccgag ttggaagtgg aggagggcct gtagagagca agaccaaccc      6660
     ctatataagg gacaaggccg gttcattgta aaacccccga atacaatcta cttgaatcgt      6720
     tcttttacta tgttttctat tttaccctag tttagtatat ctttgtcggt ttgcgccgta      6780
     aaccgtccgc cgccgctgcg agagtgcgac acttctttgt aggtttgtcc tggaaacctt      6840
     ccgttttgcc cacgatacgg gtagttatca tcatatcgat ctaaatcggc gtagaggctg      6900
     attttgatct ctaaatcggc tccgctagcc ggtttagttg tttttctaca aaacccatct      6960
     tgatttggtc gcttggctag atcgaggtgg ttggcgactc catatcacca caaggcgttt      7020
     aggtgttgcg atcgtgctcg tcgacttgtc acaaaaagtt gccacca                    7067
//
ID   TRUNCATOR   repbase; DNA   ; ORY   ; 2918 BP.
XX
AC   .
XX
DT   09-SEP-2002 (Rel. 7.08, Created)
DT   11-JUL-2005 (Rel. 7.08, Last updated, Version 2)
XX
DE   Rice gypsy-type long terminal repeat TRUNCATOR.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; Long terminal repeat; TRUNCATOR;
KW   retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RA   Song Y.W., Pi Y.L., Bureau E.T., Ronald C.P.;
RT   "Identification and characterization of 14 transposon-like
RT   elements in the noncoding regions of members of the Xa21 family
RT   of disease resistance genes in rice.";
RL   Mol. Gen. Genet 258(5), 449-456 (1998).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2918 BP; 641 A; 691 C; 673 G; 913 T; 0 other;
     ctctctgtca caccctgaaa attcaaaata tataaattgt tgtttaaatg gaatttttag        60
     aatttatttt aaaagcctag aagagaagat ctaattttaa attaataaat tacaatataa       120
     aatggggcca gataaaattt cattaaatac tttgcttaat tctataattc ctagattttt       180
     ctgggattta tttgagctaa ggaagtattt ttaataaatg gaattacatt tcatgaataa       240
     tttaaattga aaaaggtttt aaaaagtctc ttttggcttt gggccgaaag tcggcccaaa       300
     accgctctct ctctcctcgg cccagtccgg cccagtccgc cgccgcgcgc gcgcgtccgc       360
     ccgctgacag gtggggccaa cctgtcaggg tcgtcgtcaa cctccggccg ccgccgcccg       420
     aaaccctagt ttcgcgccgc cgccgttccc ttccaaattc gatcgatcct ttccgtttcc       480
     ggccgaattg atagagggga aacaatctcc gggatctcct ctaccttttc tcttttggaa       540
     acatcggcta attcgttttg gaaatcgttg gaatcgagtt cgaatcggat tcgtctccct       600
     cctccgaacc ctaaaccttc cttctcgtcg ccagccgccg tgggccttcg ccgtcgcctg       660
     cgagcccctt taaaaggttc cccggtgtct cctctacccg tcgccacctt cgccttcgcc       720
     tctcgtcgcc ggaagagctc tagcgccgtg caacctagcg ccgccgtcgt agccgtcgct       780
     ccagccgtgc gtcgccgccg tctcggtcgt catcatcgct cgggaaggcc accgtcgtga       840
     tcgccaagtc gccgccgttc tcgtccgctc ctttgccgcc gccgaagacc gccggagcac       900
     cgtcgccacc gtcgacccga agtttgccgc cgcttcctcc tcgtcgccgt cgccgtccat       960
     tgatcttccg ccgctctttt ggtcaccggt gagttcgccg cgtcgcgctc tacccgttgg      1020
     tgccttccat tcgcgccgcc gtgccgtcgt tcgccggcga gcgtgcaagc ccgagccgcc      1080
     gagccgccgc cgccggtggt gacgtcatcg ccgacgtcat cggggccgtt cgctgtgagc      1140
     cggtcgtgga ccgttcgatc tcggccgtcc gttttggatc aagtcgatct cggccgtccg      1200
     ttcgcgtgag ccgtcgcctg tgtgcccggt ccaccgaaac cctagcccgc tgacgcaata      1260
     atcctccttt tccttttcaa aaataattca ttattgcgtc ataattcaat taaaatcaat      1320
     ttaagtgttt taatccgatt taatcttcaa aaattcataa ctaattcatc ttagctccga      1380
     tttagttggt ttatgtgctg ttttggtggt tttgcttctt tttgtttaga ttccgtcgtt      1440
     tccggagagt ccgttttcgc cggagaagag tttgaagagt tccaaggcca gcaaggcaag      1500
     tcacacagat cccatacaac cctttgagca tgttgatcct atttaaagct attgtttcta      1560
     ttcaaatatt gcatttattt tcgaatgtca ttgggtggaa ttaacctatt gtttgttata      1620
     gcccttttgt tattgattac tttattcctt gataccttgg gttattataa tttgactagt      1680
     gagctttata tattggttca actagatatt agatataatt gcttagccct gcttagaaac      1740
     attagcttac tattgggata acttatgact cactgttatt taatgatggc ttaatgatag      1800
     ttcacgatgg tcaatcgtga tttgttaatt aattatttgc caactaaaac ctgataatgg      1860
     tgggttgtga gcacatggtt ttgatggtcg tgctcatgac aattaaggac cggttcacga      1920
     gtttcggttg tgaaacatta accgtgccaa ccataagcca gcatgggcaa cggctttatc      1980
     ttttatatag catggttcat tgcggggcac cagactgaga agtggcggag ataagcccac      2040
     gagggtcgct ggggagtcca tgccttgttt ttaagggggt gattatgatc caggaaggtg      2100
     cactgcagtg gattgtgtta tgcaaggggt attgtcacaa ctcctttccg aggtaccgtg      2160
     gtggtattga ggcacatggt gacatgatgt ggggttgtgt cttgtgggta cagtggtaca      2220
     cctctgatca gagtaaaact attcgaatag ccgtgcccgc ggttataggc gggtctaaca      2280
     atatctttcg tgattagtct cacccttctc atcataataa aaggtgcttt aattggtaat      2340
     aatttgatta gctcctggtt tggaatggta tattcctggt ttggagatag aactgtgcag      2400
     ccgggatggt tgttcagaat ggttgggcct atacaacagg gtatgttgta tagcgttgga      2460
     ttaatattgt ttaattactt aactgtttta ttaaattctc aaatgtttgc taaatgctgc      2520
     ttttgcaaat aaaaccctac tatgccatcc tttgttatcc tgtgcacttg catatttgct      2580
     gcgtggcttg ctgagtatgt catatactca ccttgcaatc attcatcaga ggaagagttc      2640
     tacagtgaag ctgatggtgt ggaggattag gtgtagcctt ggtcaagctg cctgtggagt      2700
     ggagccgtct gcgccgttta tcttattttt ccgctgctta gatctttatt gattgagagg      2760
     aactatctac ctctgtaatg acattttata cgcttattaa ttagagtaat aattgtactc      2820
     tattatcaat ttgttattgt gtgtctcggc tgattcctgg acgagggttc acacacatgt      2880
     aagcgtttgg aattttggat agaaattccg gcgtgaca                              2918
//
ID   HELITRON1_OS repbase; DNA   ; ORY   ; 10182 BP.
XX
AC   AP002484;
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   10-JUL-2002 (Rel. 7.06, Last updated, Version 1)
XX
DE   HELITRON1_OS is a rolling-circle DNA transposon.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; HELITRON class;
KW   HELITRON1_OS; helicase; replication protein A.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10182
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON1_OS.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
DR   GenBank; AP002484; Positions  128092  117138.
XX
CC   HELITRON1_OS encodes the 1635-aa OSHEL1p and 280-aa OSRPA1Hp
CC   proteins.
CC   OSHEL1p is composed of the rolling-circle initiator and DNA
CC   helicase domains.
CC   OSHEL1p (CDS positions: 44-204, 236-410, 855-969, 1185-1292,
CC   1712-1972, 2063-2128, 2212-2353, 2499-3381, 3536-6528):
CC   MVLVHGLSATAMWAIHFFFVRTNHRTCLCERLVLCVSALILFTCTVGTDLRSSILFYAVH
CC   CVHGVCDLIATCSSTNWKHPYTIGSFLSRPHHNSLHMVYAPWVSALWGTSFCIQIVSFLG
CC   VPDLCLFIIDRLILVFHRGEDLHGLDRSFKGDFGFQLVFLVVASVISLIADRLSFQSPSF
CC   FRRRLEDMSDQGLNRVRRVRASRERRAANILSRQLPMHIEHTIVEPVQSTCGNERKRARS
CC   IMNFTPELSKLNRQRRSLLSSKMPPLALTCTNNVLNAHNSGSSSRTDKEYVQSLKACYPG
CC   RSYYGPPTYECPYCGAMFWYQERVKSTSAISKRKIIYNLLQRCIDKSINTGNAPYVFKIN
CC   GVVHHWIGCLLPSHGSPPKFAQLYIYYPENETQNRLNIFENDGDNADRADPEIIAALSLM
CC   LDSENSLVQNFRYARERLSEHGNQQLTLRLLGCNAKDDVQYNLPTSGEISGIIVGDFLAK
CC   EYKFDVLVYDKDHGLHQVSPLHPSYMALQYPLLFPYGERGFHLGIKYNNYDGIGRKYVTM
CC   QEFFRYRMHYRLNEPNPFTCYGRLSDQIDVDVFSTIEANRLQFFIDHQPELRAESVDGIV
CC   DAIDGIVDAIDRGVTDGDSVGKRMILPASFIGGRRYMYSLNIQVCDYLLFKIIPVLYTVE
CC   FQKRGLPHIHCLVWLAAPTAEISASVIDGFICAEIPDYDTDRLGYELVSEFMMHGPCGDA
CC   NKSCACMKNNKCSKNYPKDFQDETIIDEAGFTIYRRRNDGRHIIKNGIPLDNRSVVPYNM
CC   KLLKTYQAHINVEWCNKSNLIKYLFKYITKGQDRARIYFETTGKTTNASPNHDLAPQDEI
CC   LEYMDGRFLSTCESLHRLFEFDIHYRMPSVERLVVHLPGKNYVRYEKGSNLRAVLKSPAA
CC   KSSMLTEWFEANKKYPKAHSLTYCEFPKEQTWEPSSRVWRPRTPAPKIGRIYYVHPTAGE
CC   LYYLRMILMIVRGAQSYADVRTYNGIVYSTYREACEAQGLLEGDNEWYLLFDEAILTASS
CC   QQLRQLFVTILLYCSVIDVRSLFDKYWIHMTDDIHNRLKKALDNPHCIIPQDHLLNLLLH
CC   ELATVFAKSGGDIKDFNLPHPTSIAHIAGGNRLIDEELTIDPLMLSMHADSLITQLNTEQ
CC   KHIFDVISSRVAHNQPGFFFVCGHGGTGKTFLWNAIIAKLRSQNKIVLAVASSRVASLLL
CC   PRGRTAHSRFKIPIDIDETSICNIKRGSMLAELLIEASLIIWDEAPMTHRRCFEALDRTL
CC   RDILSQTCATNSIIPFGGKPVVLGGDFRQILPVVPKGSRHAIVNASITNSDLWKHVTVLT
CC   MNINMRLLNTNLEQKQKDELHDFSKWVLAIGNGTIPMTTKEGESYPSWIEIPHDLLIITD
CC   GDKISAIVNEVYCDFFASYMNPEYLASRAIVCPNNATIDEINDYVIGLVPREARIYLSCD
CC   TISKCAEQIPDFDLLYPPEFLNSINAANFPTHRLILKEGVVVMLLRNLNQSIGLCNGTRL
CC   LIVALGDRILQCIILIGSNIGDTVYIPRITLSTTKMKWPFTLQRRQFPIRVCYAMTINKS
CC   QGQTLQRVGVYLRKPIFTHGQLYVTISRATSRSGLKILIENDDGSCGNHTRNIVYSEILT
CC   ATFPAVLFLTLPYTL
CC   OSRPA1Hp is similar to the RPA70 subunit of the replication
CC   protein A.
CC   OSRPA1Hp (CDS positions 6812-6955, 7048-7449, 7696-7798,
CC   7884-7962, 8094-8187):
CC   MAHILISQLSCGDSNIRIKARVSRLWDFHDLNDDRKIVHTDLVLLDETGNSIHAQMYQHV
CC   IVNLKPLLQEGKVYYIDSFTVRYANRTYRPVAHSLMILFTKWTTLEECVDVPADFPAITF
CC   SLTPFGDVPSLVDKNIFYVGNNLSIPSYYIYTSFASLQHLLNLYHIQTDIMGVIAEIGTT
CC   STRATAFDAENIYNAGQRQPQVVVFVGTLVKNYKGLGLTLTGSSPCKWYINFEIPEVVEL
CC   KERWNDAPPAGFNQSNPQEKTLKDILDLNPHKHKYKLVLI.
XX
SQ   Sequence 10182 BP; 3051 A; 2026 C; 1826 G; 3279 T; 0 other;
     atgcgagtgg ttgcttcctg tgtttcatcg atgaccttgg tgcatggtct tggtgcatgg        60
     tcttagtgcc actgctatgt gggccattca ctttttcttt gttagaacca accatagaac       120
     ttgtttatgc gagaggcttg tcctttgtgt cagcgctctt atactgttta catgcaccgt       180
     tggaactgat ctacggtctt ctatgtatgt tttgtggccc ctgttttgct tttagtctct       240
     tctatgccgt gcattgtgtt cacggtgtat gcgatctgat cgctacctgc agctccacta       300
     actggaagca tccttacact attggttcgt ttttgtctag gccacatcac aatagcttgc       360
     acatggtcta tgcaccttgg gtctctgcat tgtggggtac cagtttttgt gtgtgctggt       420
     tggaccacca gcatttgtcc atgtcttaat ccattgtact caatcatata ctgttgcatt       480
     tcacttagtt gagtgatagt tctactagag gcaaaacaat tgtttcactg ctactgggac       540
     cgcctgtcat ggtgttgaca gttgtctatt tgttattggt gggtaccttt ctttcacggt       600
     ggatatgaga ttgcttttat tttttaagct aaaatagcat attggtttca tccttatatg       660
     tatcgcctcc aatattgctt gcttccttcc tcttgcttct cgccttatct cactgcattc       720
     agttgtgtgt tgttcaccga tttcacacca ctgatcgacc tattatcatt gtgctaaatc       780
     atccattact aatggcaggg taataattgg atttaaatgg atttcttctt ttttatatgt       840
     gtggattcaa ttagattcag attgtctcct ttttgggtgt gcctgatctg tgcctcttca       900
     ttattgatcg tttaatacta gtttttcaca ggggagaaga tttgcatggg ttagatcgca       960
     gtttcaaagg ttcttgattg tttttcgtaa taagtgcaag agctgctgat gtgatttggc      1020
     aggtattctt ttttttctct tttcttctcg acattttgtg acataaatcg tattcttttg      1080
     gctgcattcg gctcaagatt attctgtact aatctttttg cgtttgtcat gcagctctga      1140
     tcggttctgt gggtagttgt tcgttgttat tattgctgct ttaggagatt tcggatttca      1200
     gttagtgttc ttggtggtag ccagtgtgat ctctcttatt gctgatcgtc tgtcgttcca      1260
     gtccccgtcg ttctttcgtc gaagactcga aggtaattta ttacttcata ctgtttattt      1320
     ttgcgtggtt tttacaagca aattacctat cagttttgtg atgtatgctg catctctgta      1380
     tgcatggatt ggtttctccg tatcaacatt ctttttgtca ttgtggagtg ttcttttgtt      1440
     ccttgtgtaa aaattactag ctttgtttga atcattgctt tgtgtgttgt ggttgtacga      1500
     gagagaacgt acatgcactg ttataacggt tgagtgtata ctttctacta gctgttacat      1560
     agatggtcat gcatatgttt cttttttttt tatgtctcat ctctcttttt agctatggtc      1620
     atctttcctc cccttaccta ttttttcctt tctccatata tgacttccta gctcctcttt      1680
     cctttacatt ctcatgttat gctgtttgta gacatgtcag atcagggttt aaatagagtg      1740
     cgcagagttc gtgctagccg ggaaaggcga gctgcaaata ttctatctcg acagcttccc      1800
     atgcacatag aacataccat agtagaacca gttcagtcta catgtggaaa tgagcggaaa      1860
     agagcacgtt cgattatgaa tttcacacct gagttatcta agttaaatag acaacgacgt      1920
     tctttgctaa gctcaaagat gcctcctctt gctcttacgt gcactaacaa tggtatgtag      1980
     gttatttttc atgatatatt cataatatat caaatcacat ataggtttgt aaaaatattc      2040
     ttggaatatt tgtttgctgc agttctcaat gcacacaata gtggtagctc atcacggaca      2100
     gataaggagt acgtgcagtc actaaagggt ctgcacccct actacacata caatagtctt      2160
     ttttttattt ccaaacataa attcttactt tgttcactgc gtatattaca gcgtgttacc      2220
     cgggcagatc atactacggt cctccaacat atgagtgccc atattgtggt gccatgtttt      2280
     ggtatcagga aagagtgaaa agcacttcag ctatttccaa gcgaaaaata atctataact      2340
     tgttgcaaag gtggtaaaat acaattgccc aaattgcgcc ctccccctga accacttgcg      2400
     acattaataa attttaatgg cgatgcacga tcaaagagat ttttgaggca gatacgatca      2460
     tataactcga tgtttgcttt cacttcaatg ggtgcaagta tcgacaaatc aattaatact      2520
     ggaaatgcgc cttatgtttt caagattaat ggtgttgtcc atcattggat tggttgtctt      2580
     ttgccatctc atggttcacc tccaaaattt gcacagttat atatttatta tcctgaaaat      2640
     gaaacacaaa acagactaaa tatttttgaa aatgatggag ataatgcaga tagagctgat      2700
     cctgaaataa ttgctgccct ttcattgatg cttgatagtg aaaatagcct tgtgcagaac      2760
     tttaggtatg ctagagaacg actttctgaa catggcaacc aacagctaac tcttcgtctc      2820
     ttaggctgca atgcgaaaga tgatgtgcaa tacaatttac caacaagtgg tgaaatatct      2880
     ggcataatag ttggtgattt cttagcaaaa gagtacaaat ttgatgtgct tgtctatgat      2940
     aaagaccatg gattacacca ggtttcgcca ctgcatccat catatatggc cctgcaatat      3000
     cctttattat ttccatacgg tgaacgagga ttccatttag gcattaagta caataattat      3060
     gatggaattg gaagaaaata tgtgacaatg caggaatttt ttagatacag aatgcactat      3120
     agactaaatg aaccaaatcc tttcacatgc tatggacgac taagcgatca aatcgatgtt      3180
     gatgtgtttt ctactattga ggctaatagg ttacaatttt tcattgacca ccaacctgag      3240
     ttacgagctg agtctgtaga tggaattgta gatgcaatcg atggaattgt agatgcaatc      3300
     gatagaggtg tcaccgatgg agattcagtt ggcaagcgca tgatacttcc tgccagcttc      3360
     attggaggaa ggagatatat ggtaatgaat tatcaagatg caaccatctg atagagctga      3420
     tatcattgtg cgtgtattta atatgaaagt taatgaattc ataactgaca ttagagaagg      3480
     cagaactttt ggtaaagttc ttgtaggtat ttttgctcct tcctatttca tatagtattc      3540
     cttaaacata caagtatgtg attacttatt atttaaaatt attccagtac tctacaccgt      3600
     tgagttccaa aagcgtggac tcccacacat acattgcttg gtatggcttg cagcacccac      3660
     cgctgagata tcagcatcgg taatagatgg ttttatttgt gctgaaatac cagactatga      3720
     cactgatcga ctaggatatg aattggttag tgaattcatg atgcatggtc cgtgtggaga      3780
     tgcgaacaaa agttgtgctt gcatgaaaaa taataaatgc tcaaaaaatt atccaaaaga      3840
     ttttcaggat gaaaccatta ttgatgaggc tggctttaca atttatagac gacgaaatga      3900
     tggacgacat attataaaaa atggaattcc attggacaac agatcggttg ttccttacaa      3960
     catgaagctg cttaaaacat atcaagcaca cataaatgtt gagtggtgta ataaatcaaa      4020
     tttgataaaa tatttattta aatatatcac aaagggtcaa gatcgtgcta gaatctattt      4080
     tgagacaacc ggtaaaacaa caaatgcatc accaaatcat gaccttgcac cacaagatga      4140
     gatattagaa tatatggatg gtaggttcct ttctacatgt gagtctcttc atcgactatt      4200
     tgagtttgat atacattata gaatgccatc tgttgagcga ttagttgtac atttgcctgg      4260
     caaaaattat gttagatatg agaaagggtc taatttacga gcagtcctaa agagccctgc      4320
     tgcaaaaagt tcgatgctaa ctgaatggtt tgaagcgaat aaaaaatatc ctaaggctca      4380
     ttcattgaca tactgcgaat ttccaaaaga acagacatgg gagccatcat ctagagtgtg      4440
     gcgcccacga actcctgctc caaaaattgg tagaatttac tatgtgcatc caactgctgg      4500
     tgagctttac tacttgcgaa tgatactgat gattgttaga ggtgcccaaa gttatgctga      4560
     tgtgcgaaca tacaatggca ttgtttattc cacatataga gaggcctgtg aggcacaagg      4620
     gctcctcgaa ggagacaatg aatggtacct gctttttgat gaggcaatac taactgcatc      4680
     atcgcaacag cttagacaac tttttgtaac catccttctt tattgctcag ttatagatgt      4740
     gcgctcatta tttgacaagt actggataca catgacagat gatattcata atagactaaa      4800
     aaaagcgcta gataatcctc actgcataat tccacaggat cacttgctta accttctatt      4860
     acatgagctt gctactgtat ttgcaaaaag tggtggtgac ataaaggatt ttaacttgcc      4920
     acacccaacc tccattgcac atatcgctgg tggtaacaga ttgattgatg aggaacttac      4980
     aattgatcca cttatgctaa gcatgcatgc agattctttg ataacacaat tgaatactga      5040
     gcaaaaacat atttttgatg ttatatcttc tcgtgttgct cataatcagc ctggtttctt      5100
     ctttgtgtgt ggccatgggg gaaccggcaa aacatttcta tggaatgcta tcattgcaaa      5160
     acttagatca caaaataaaa ttgtgcttgc tgtagcgtca tcaagggtgg catctttact      5220
     gctacctaga ggtaggacag ctcactcacg atttaaaata cccattgata ttgatgagac      5280
     aagcatttgt aacattaaac gaggaagcat gcttgctgaa cttttaattg aagcttcgct      5340
     tattatatgg gatgaggctc cgatgacaca taggcgatgt tttgaagcgt tggatcggac      5400
     tttacgtgat atcctttctc aaacgtgtgc tacaaattct attatacctt ttggaggaaa      5460
     acccgtcgtt ctaggtggtg atttcagaca gatattgcca gttgttccta aaggttcccg      5520
     ccatgctata gtcaatgcat caatcacaaa ttcagatcta tggaaacatg taacagtctt      5580
     aacgatgaat ataaatatga gactacttaa cacaaaccta gagcaaaagc aaaaagatga      5640
     gctgcatgat tttagtaagt gggttttagc tattggtaat ggcacaatac ctatgaccac      5700
     gaaggaaggt gaaagctatc catcatggat cgaaattcct catgacttac ttattataac      5760
     tgatggtgat aaaatatctg ctattgtgaa tgaagtgtat tgtgattttt ttgcatcata      5820
     catgaatcct gaatacttag cttctcgtgc aattgtttgt cctaacaatg ctacaataga      5880
     tgaaataaat gactatgtta ttggtttagt accaagagaa gcaaggatat acctaagctg      5940
     cgatacaata tcaaagtgcg ctgaacaaat tccagatttt gacttgctat atccacctga      6000
     gtttcttaat tcaataaatg ctgcaaactt ccctacacat agacttatcc tcaaagaagg      6060
     tgttgttgtc atgttgctca gaaatctaaa ccaatcaatt ggtctctgca atggaacaag      6120
     actattaatt gttgctttag gtgatagaat tcttcaatgc attatactca ttggctcaaa      6180
     cattggtgat actgtttaca tacctcgaat aacactgagt actactaaaa tgaaatggcc      6240
     ttttacattg caaaggagac aattccctat tcgagtttgc tatgcaatga ccatcaataa      6300
     aagtcaagga caaacactac aacgagttgg tgtgtacctt agaaaaccta tttttacaca      6360
     tggccagttg tatgttacaa tttcaagagc tacaagtcga tcaggtctaa aaatattaat      6420
     tgagaacgac gatggttcat gcggaaacca tacaaggaat attgtttaca gtgaaatact      6480
     cactgctaca tttccagcgg tgcttttctt aacactgccc tatacattgt attcatcttt      6540
     ttcttagcat catttagtaa tgcaaatcca ttccaattgc aggctccgcc gttgcatact      6600
     tagctatttt ggcctaaaca gggacaaatt ttgtacaaac attttggaat aaatatatgt      6660
     cttcagcagc tatcatgtgc tatatacccg ctgcaatatt cccctcttaa tattatatgt      6720
     actgtctttg tcatcactgt tttctttcat tagcagtaac tatatagatt aatatgtatt      6780
     aaaattgttt actacctatt gcagattcca aatggcgcac atactcatct cacagctgtc      6840
     atgtggtgat tcaaacatac gaattaaggc aagagtttct aggctatggg actttcatga      6900
     tctcaatgat gatagaaaaa ttgtgcacac tgatcttgtc ttactggatg aaacggtaac      6960
     aatttaccta ctgcaatttt acactagaat tttctttatt gtattaatca ttctattgac      7020
     aatattctct atatttaaaa aatatagggg aacagcatac atgctcaaat gtatcagcat      7080
     gtaatagtga acttgaaacc tcttcttcaa gaaggaaaag tttactacat tgattcattc      7140
     actgtcagat atgcaaatag gacatatagg ccagttgcac atagcctaat gatcctattc      7200
     actaaatgga caactttaga agaatgtgtc gatgtgcctg ctgatttccc tgctataaca      7260
     ttttcattga caccttttgg agatgttccc tctcttgtgg acaaaaacat cttttatgtt      7320
     ggtaataacc tatccatacc atcttactac atatacacat cttttgcttc tttacaacat      7380
     ttattaaatt tataccacat acaaacagat attatgggtg ttatcgctga aattggcaca      7440
     acgtctactg tacgtcctca gtcaaggaac actgacagtt taaaaagaac actataaata      7500
     tgtgatgcaa ggttagttcc atgaaactca gtccttacca ttctactttc caaatatttg      7560
     ttttaacgaa cattcatact cacttttaca catgctttga atatctaata atttgttcca      7620
     attataatta caccaatttt tctattaatc cacaacacta gcaattccac actacctctc      7680
     acactttgtg gagagcgagc aactgctttc gatgctgaga atatctacaa tgctggccaa      7740
     agacaacctc aggtggttgt gtttgttggc acgcttgtca agaactacaa aggcttaggt      7800
     acatttgtac ctacaatttc gcttactatg ttgtgtataa tacaaaatta acaatatttc      7860
     aaaattcctc tattcttcta cagggcttac actgactgga agctccccat gcaaatggta      7920
     cattaacttt gaaatacctg aagtagtgga actgaaagaa aggtgatctt gttatcttcc      7980
     aagtattcct gcaatctatt tacattgcac aatttgcaac tattaggatg acatccatta      8040
     attctagaca caatatgttt gcatagcttt agcaccaact ttcagccaat caggtggaac      8100
     gacgctcctc ctgcaggatt caaccaaagc aacccacaag aaaagacact taaagacatt      8160
     cttgacctta atcctcataa acataaggtt tgtcttacct cttaattaac tatcaacaac      8220
     attttcctgg attttacagt cgtattatca acagaatttt ttcactctta tcctttgcag      8280
     gaagcacgct tcatagtaaa tgtggttgtt aaaagaatat gcaacgaaaa ctcctagtgg      8340
     tacaattcat gtcacctatg ctacaaaacc tcaaaaccat atggctcagc ctacaagtgc      8400
     accagttgtt cctatatagg aataccagat caaaggtcaa tagcgcagtt taattaattc      8460
     tacatgtcta actatttatc actcacaaat ttctatattc atttaaattt acatgcaagt      8520
     acaaattagt gctaattgct ggagatacta ctgcagatgc aacatttatt ctttttggaa      8580
     aaactgcgca acgcatcata cgaaggccag tggaatctct gatcgaagaa aatccaccgg      8640
     acagtgaatt cattccaagg gaaatcttag cacttgttga caatggtttt ctatggaatg      8700
     tcagcttcac aaaggatatt aacagaagcg aagaaactct ccaggttaat agtgttatat      8760
     cctctggtcc agcaaatcaa ccaccgctgc ttatgtcgcc aagtacttca cagccagcat      8820
     cagcaattgt atcggcaagc tcaagcagtt ctctccagac agcaccaaca ccaagtgaaa      8880
     caagcaccga atcgcaatta gccatcatac cagcacaggg cacttcaaca ccaacaaaat      8940
     acactcctgc tgctgcaaca gatgagacac caactagcaa atcaagctcc ttagtattta      9000
     ccaaaaaaag cattattgtc tcaggctact ctatgccatc tcacactgca aagacctcta      9060
     ctgatactaa ggtatccttc ttaataccta ctcttgcact tcctctgcta taaacaaatt      9120
     ttcctaaata attggagata cactctgacc tattgaccaa ctatgcaagg caaaaattgg      9180
     cactcatcat gaagagaaga tctcacaaag tgcatcttta actacaattg ttccccgtga      9240
     tacttcggat aaggtattca tgctctttct tttcataacc taatccatca atttctgaaa      9300
     aaaaagtgct tcttctacaa ggcaaaggtc accgctgaat ctccagatga gtctccacag      9360
     gcagatcctt cactggcgcc aaagagcaca cccaaaaaaa ggtctgtaaa gctttcagtt      9420
     caaagttaca gtaatagaca tttctcgcac acattgtatt tgacatgtcc ttataatgaa      9480
     cagaggtaga cctacagaaa ccaccacaat tgccaaaaaa ttgttcaagg atagtaccca      9540
     gaagaaaccc actgacaggt taattctgaa taactcagct cacctctcca cacatacgca      9600
     ttaattcttt agtaaacttc actaaatttc taaactcatc attcattcct acagtgaatg      9660
     agacggatat atgtagtcca tcagcaagtc ttttgtgtat atgtacagaa cgaaccaccc      9720
     aagctagaag tgtagaagca acaagttagc tgcaagccta gaggaggcta agaagcaagc      9780
     ccttttgttc atgaccccta ggtcatgatt atcattgtaa ataagtaatg ttatgtttac      9840
     cttccttgcc accttctgtg ctatgaaatg ttgttcgaac aactactact tatatggaac      9900
     caatatagtt atggctgcgt actacctaaa catttctcct tcatgtcaaa gacaccatta      9960
     tacgcaaacc ttttattttc tactatagct atatcgaacc atacaataca ctacatgata     10020
     aatagcacaa attattctga caagcaaact ccattgtctc aatcctacgg catggaaaga     10080
     tttttaaaat acactacact atctatattc ctatacattt aaatgatgaa aaaaacttcc     10140
     agctccacaa gagcagcgcg cgaagcgcgc tctcgcccct ag                        10182
//
ID   CLOUD-6     repbase; DNA   ; ORY   ; 508 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice Mutator-like non-autonomous DNA transposon CLOUD-6.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; CLOUD-4;
KW   CLOUD-6; Mutator-like; target site duplication.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-508
RA   Jiang N., Wessler R.S.;
RT   "CLOUD-6: a Mutator-like non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Repbase Reports 2(7), 12-12 (2002).
XX
CC   [1] (Consensus)
XX
CC   9bp target site duplications. Related to CLOUD-4.
XX
SQ   Sequence 508 BP; 156 A; 108 C; 107 G; 137 T; 0 other;
     gagtgaagta catgggcggt ctctaaactt gtgccagtgt gtcatctagg tccctgaact        60
     cctaaaatgc atttttaggt cccttaactt gccatgtgtg ttatataggt ccaaacgggt       120
     tctaacccac tcgatgcgct gacgtggcaa tgccacggtg acacctccgt gttagtggaa       180
     tccacatgtc aagcatatat aaaaaataaa attaaaaacc atattttctc ctcttaggta       240
     gacagaaaaa aaagataaaa attctaaggt agagaggaga aaatatgttt ttctacttat       300
     atttttttct atgtgactga cacgtgggtc caactaacac gtatgaacta tcgtggcatg       360
     ccacatcagc gcatggaagg ggttggagct catttgaacc tatatgacac cccaaaacaa       420
     gttcgaggac acgaaaatgc attttgagag tttagggacc tagatgacac acccgcacaa       480
     gtttagagac cgctcgtgca cttcactc                                          508
//
ID   SZ-26       repbase; DNA   ; ORY   ; 5594 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice retrotransposon SZ-26.
XX
KW   LTR Retrotransposon; Interspersed Repeat; SZ-26.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5594
RA   Jiang N., Wessler R.S.;
RT   "SZ-26: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 83-83 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-26 has 387bp LTRs.
XX
SQ   Sequence 5594 BP; 1571 A; 1169 C; 1379 G; 1475 T; 0 other;
     tgtcaagatc ttgcctgatg gagaacagga gaacaatgca gtagaactgg agatagcagc        60
     agagcaggag atagaagaga cttcaagcgc tacagcaaag aagcccattc gagctcgtgt       120
     tcctaaccct cgctatagtg ggccaatgtg ggccaagtaa catctttctt gtaatagggg       180
     aaagaattcg ccagctgtaa tactgtttgg ctgtaagaga gagagagaga gagagagaag       240
     ggatacggta taaaacactc aatgtatccg tgactcgaat catcgatgaa ttgaattggt       300
     ggcggcttgg cggcggcggc gctcgatccg gttgggtcga gtcgacgata acctatctgt       360
     tcttgtgatc tgtgagagga attgacaaaa cttggtatca gagcctacta tcccacccaa       420
     ttcttgatcc ggcagcaaaa gggttccgat tggggattgg agatcggctc ttgcagctga       480
     aatccgcgaa aaggtaactt gcccctctcg gtttgctgga ttaggaacag gggaagtgga       540
     tcccgttgcg tcaaactaga aaagccaagg tatcaaacca agcaagcgtt caaaatcatg       600
     gagaacgagg ccaagctgga tctgatcctg aagaagctga ccgagacgga ctccaagttg       660
     gtggatctgg agaagaactc ccgcgcggat atgctgaacc tcaagacatc agtggattcg       720
     tggaagccac agctcgagaa gaaggtgact gatctggcga ccaccgttgg aaatctgcag       780
     cttcagttcg atcagcttca actcctgaac aaggcggagc cgaagcctga ccttaccgcc       840
     caattgggcg cccgcaatgc tgctgaaata cgggcggagg tgcttgggtc tcatccccaa       900
     tcaccacccc cggccaatgg tacgaactca atcttgttct ccacacctgc tccttatttc       960
     catgatccag ccatgcgaac tgcttttact ggtagtgctg tgggcacaag cactggttta      1020
     cctcctatgc catgtccaca atttgatgga gataaccccc aaatgtggag agaaaactgt      1080
     gaagcctact ttgatactta tggagtcagc cctgctcatt gggttaggat agccaccctc      1140
     aatttttctg ggaatgcctc attttggttg cagtcagtta ggtcccaatt aataggagtc      1200
     acttgggtag aactttgtga gaaagtttgt gctaagtttt ctagggatag gcatcaacag      1260
     ctgataaggc aatacataca cattagacag actggtagtg taactgaata tgtggataag      1320
     tttgatagct tgatgcacca attgattgct tacgatagtg aactgaagcc tgtgtacttc      1380
     gtcactaagt tcgtagaggg tttaaaggat gctattcaca ctgtaattat ggtgcaacgc      1440
     ccccaagatc tggatactgc ttgctctttg gctttattac aggaggaggc aatgctggga      1500
     actcgaaggt tggagttctc tactccagtg aagtccaatt tcaggaacac tgctcaagtt      1560
     tctttgacac ctctaccagt gagacctgtt gtgaatgagg ataagaaaac ccctgaagca      1620
     gctaagatta ctcccagaga tgatagattg tcctcactta aggcttacag aaaatctaag      1680
     gggctgtgtt tcacttgtgg tgaaaggtgg ggaagggacc acaaatgtgc ctcaacagta      1740
     cagttacatg tcatggaaga gcttttagaa gctttgcaag aagatgatga cccagttggt      1800
     gatgatattg tggctgaagc tgagggcact cttatggcag tttcaagtca ggcaatagct      1860
     ggagtggaat cttcaaagtc tattagggtg agaggttggg ttcagggctt ggaactctta      1920
     atgcttgttg atagtggaag tactcactcc ttcattgatg agcaagtggc tagaaagctg      1980
     gcaggaattc agaccttatc acatccagtg cagattaaga ttgctgacgg tggaaccatg      2040
     cagtgtgata gaagcatacc taactgcaac tggtggatac aaggttgctc tttcagaact      2100
     gaattcagag ttctacaatt gggagggtac gatgctatcc tggggatgga ctggcttgaa      2160
     cagttcagcc ctatgaaggt ggattgggtg cagaaatggc tcgaatttcc tctggcaaga      2220
     aggttgatca gaattgaggg tatctagcct caaactgacc actaccctca gattacttct      2280
     ctgcagatca aagggcttat gaagactgag tcagtaatgc atgtactaca gattcagaag      2340
     actgaccaga catctgatgt agtgattcct gattcaatca agcatgtatt ggacaggttt      2400
     caggaagtgt tccaagaacc cacagaaatg ccacccgtaa ggaattgtga tcacaagatt      2460
     cccttgatgg aaggagcaag tccagtcaac ctcagaccct ataggcatac cccagcactc      2520
     aaggatgaaa ttgagcgtca agtaactgaa atgcttcagt ctggagtcat acaaaacagc      2580
     aatagtgctt tttcatcacc agcactgcta gtcaaaaaga aagatggcac ctggagactt      2640
     tgcatagact ataagcacct gaatgcaatt acaattaagg gaaaataccc tttgcctgtc      2700
     attgatgagc ttctggatga gctttctgga gctaagtatt tctctaaact cgatttaagg      2760
     gcaggttatc accagataag gctgcaacct ggagaggagc acaagacagc cttccagact      2820
     cactcaggcc actatgagta tcgagtgatg tcctttgggt tgactggagc accagctact      2880
     tttcagaagg caatgaatga taccctagcg acagtgctaa gaaaatttac attggttttc      2940
     tttgatgaca ttctaatcta tagccctgat ctaccatcgc atattcagca tttagaacaa      3000
     gttttgcaac tacttcaagc tcaacaatgg aaagtcaagt tgagtaaatg ttcctttgca      3060
     caacaacaac tggcttacct aggccatatc attggcaagg atggagtaac cactgatcct      3120
     tctaagattg ctgatgtgct gcattggaaa attcctcagt cagtcaagca gttgaggggc      3180
     ttcctaggtt tggcaggata ttacaggaag tttgtgagaa actttggaac tatcaacaaa      3240
     ccactcaccc agctgcttaa gaaaggggtg ccctttaaat ggacagcaca aatggatgaa      3300
     gctttcaatg ccttgaagca agctttggtt agtgccccag ttttggcact gcctgacttc      3360
     tcaaaaactt tcactgtgga aacagatgcc tgtgatatgg gaataggggc agttttgtca      3420
     caggacaggc accctattgc ctttgttagc aaagcattag gtccaaaaac cagggggctg      3480
     tctacatatg agaaggaata cctggctatc ctattggcag tcgatcagtg gagatcatat      3540
     ttgcagcatg atgagtttgt catactcaca gatcaccaca atctaatgca tatcactgac      3600
     caaagattac atactccgtt gcaacataag gctttcacta agttgatggg actgcagtat      3660
     aaggtttgtt atcgaagggg aacctctaat gcagctgcag atgcattatc aagaagggat      3720
     gaagagacaa atgatcaatt gtgggctgta tccgaatgcc aacccctttg gttaacagca      3780
     gtggtaaaag ggtatgaaac tgatgagcag gctcagcaac tcttaactga attggcattg      3840
     catcctactg ccagggaaca ttttcattta gtgcaagggg tattgcggta caagggtaaa      3900
     atttggattg ggcataattt atccttacag caacagctag tcactgcctt gcatgccagc      3960
     cctataggtg gacattctgg tttcccagta acttatcagc gagtaaaagc actgtttgct      4020
     tggccacaga tgaagaaaat gattcagcag tgggtaaaga attgtactat ctgtcagcaa      4080
     gcgaaaccag acctagctaa atatccagga ctgctgcaac ccttgccgat tccagaaggt      4140
     gcctggcaag tggtctcatt ggattttatt gagggattgc caaaatcaga gagatacaat      4200
     tgcatactag tggtggttga caaattctcc aggtatgccc actttgttcc tctgtcacac      4260
     ccattctcag ccctagatgt tgcagtgtca tatatgaaga acatctacaa acttcatggg      4320
     atgcctaaag tactgatctc tgatagagac aaaattttta ctagcaaatt gtgggaattt      4380
     cttttcttga aatctggcat tgccctgcac cttagttctg cttatcaccc acagtccgat      4440
     gggcaaacta agagggttaa ccagtgtttg gaaatgtttc tccgttgttt cactaatgca      4500
     gcccctttta agtgggttac ttggttacat ttagcagggt attggtataa tacttgcttt      4560
     cattctgctt tgaacaagac accattcgaa gtactctatg gccataaccc tcttcagttg      4620
     ggtgttacta tggaaacttg tgcgattccc gatctggctg tttggcttca tgagaggaaa      4680
     ctgatggcag aattgctgca acagcatttg caccgagtac aacaaaagat gaagtttcat      4740
     gctgataaga acaggtcatt cagagaattt gcagtagggg actgggtatt tcttaagctg      4800
     caaccatacg ttcagaagtc tgttgcatct cgagcttgtc ataagctggc tttcaagttc      4860
     tatggcccct ttcagatatt ggcaagggtc ggtactgttg cttataagct tcaattgcca      4920
     gatgacagta ctatccatcc agttttccat gtttcccagc tcaaggttgc acatggattt      4980
     aagcatcaag ttcaatctcg gctgcccaaa ttcctgaaat caactgtcta tcctcttcag      5040
     attctggacc agcgattgat caggaaaggt aatcgcactg tttctcaagt tcttgtatat      5100
     tggtctgatt ctgttgcaga ggatgccacc tgggaggatc gggaagatct tcagcagcgt      5160
     tttccaatgg cactggcttg ggggcaagcc acttttcaag gggagggggt tgtcaagatc      5220
     tttcctgatg gagaacagga gaacaataca gcagaactgg agatagcagc agagcaggag      5280
     atagaagaga cttcaatcgc tacagcaaag aagcccattc gagctcgtgt tcctaaccct      5340
     cgctatagtg ggccaatgtg ggccaagtaa catctttctt gtaataggga aagaattcgc      5400
     cagctgtaat actgttggct gtaagagaga gagagagaga gaagggatac ggtataaaac      5460
     actcaatgta tccgtgactc gaatcatcga tgaattgaat tggtggcggc ttggcggcgg      5520
     cggcggcgct cgatccggtt gggtcgagtc gacgataacc tatctgttct tgtgatctgt      5580
     gagaggagtt gaca                                                        5594
//
ID   COPIA1-I_OS repbase; DNA   ; ORY   ; 6864 BP.
XX
AC   .
XX
DT   31-MAR-2005 (Rel. 9.1, Created)
DT   31-MAR-2005 (Rel. 9.1, Last updated, Version 1)
XX
DE   Rice copia-like LTR retrotranposon - internal consensus sequence.
XX
KW   6 bp TSDs; COPIA1-I_OS; copia-like retrotransposon; integrase.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-6864
RA   Gentles A., Jurka J.;
RT   "COPIA1_OS: Rice copia-type LTR retrotransposon.";
RL   Repbase Reports 5(2), 30-30 (2005).
XX
CC   [1] (Consensus)
XX
CC   Closest related element is SZ-55. 6 bp TSDs, 1214 bp LTRs.
CC   There are around 13 complete copies in the rice genome, all
CC   more than 96% similar to the consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ORF1"
FT                 /translation="MTGDKNWFSSLKKASKTESIIFGDASTSAVLATGLVK
FT                 VNEKFELKNVALVEDLKYNLLSVSQIVDENFEVHFKKTGSKVFDSCGDSVL
FT                 NISRYGRVFKADFENPVSPVITCLVAKFDKDVMFWHRRLGHVGFDHLTRLS
FT                 GLDLVRGLPKLKKDLDLVCTPCRHAKMVSTSHAPIVSVMTDAPGQLLHMDT
FT                 VGPARVQSVGGKWYVLVIVDDFSRYSWVFFMATKDEAFQHFRGLFLRLXLE
FT                 FPGSLKRIRSDNGGEFKNASFEQFCNERGLEHEFSSPRVPQQNGVVERKNR
FT                 VLVEMARTMLDEYKTPRKFWAEAINTACYISNRVFLRSKLGKTSYELRFGH
FT                 QPKVSHLRVFGCKCFVLKSGNLDKFEARSTDGLFLGYPAHTRGYRVLILXT
FT                 NKIVETCEVSFDEASPGTRPDIAGTLSQVQGEDGRIFEDESDDDDDDEVGS
FT                 AGQTGRQAGQTAGTPPVRPAQEVRSDRPGSSGSGTVDADRDGPPEITTSTS
FT                 TDTERGSTSEVAAPLHIQRRHPPEQIIGNIGERTTRSKVTTHDVCANSAFV
FT                 ASFEPKDVSHALTDESWINAMHEELENFERNKVWTLVEPPSGHNIIGTKWV
FT                 FKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFA
FT                 ASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYG
FT                 LKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIF
FT                 GCSTHALVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK
FT                 DLLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTAS
FT                 RPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICL
FT                 SGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVA
FT                 AASCCSQILWLLSTLKDYGLTFEKVPLFCDNTSAINIAKNPVQHSRTKHID
FT                 IRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDSNRFAFLRGELGIIHP
FT                 FGMVX"
XX
SQ   Sequence 6864 BP; 1922 A; 1068 C; 1540 G; 2331 T; 3 other;
     agtggtatca gagccttgtt ttcttctttg gatttttatc gatctagagt ttttgccatg        60
     gctactcccg ctaggttttc aactaagcct catgttttcg atggaacgga tttttctcat       120
     tggtgtagta ggatgcaatc ttacattatg gctgaagatt atgatatttg gagaaaagtt       180
     tctcatcctt atgtgattcc tgaagctatt aatactgctg ctgaaaaaac tgcttttgaa       240
     caaaattgca aagctcgcaa tattcttttg agtggtattt ctcgttcgga ttatgatcgt       300
     gttgctcatc ttcaaactgc tcatgagatt tggaatgctt tgagtaattt tcatcaagga       360
     acaaataaca ttaaagaact tcgtcgtgat cttttcaaaa aggagtacat taaatttgag       420
     atgaaacctg gagaagcttt ggatgactat ctttctaggt ttaataaaat tttgagtgat       480
     cttagatctg ttgattcttc ttatgatgct aattatccac aatctgagat ttctcgtcac       540
     tttttgaatg gtcttgacat gtctatttgg gagatgaaag ttacatctat tcaggagtct       600
     gttaacatgt ctactttgac tttggattca ctttatacaa aattgaaaac acatgagatg       660
     aatgttcttt ctcgaaaagt tgattctaag tcgagtgctt tggtttcttc ttcttcttct       720
     ttggatgttg atgcttcttc atctaagcct tcttttcttg ctgtttttaa tgccacatcc       780
     gatgatcaac tcgaacaaat cgaggaggag gatttggctt tggttgctaa cagaattgct       840
     cgagctatga ataatgccag gaacaggaaa agaggtggtc caaatcgttg ctttgaatgt       900
     ggttcaattg atcatcttcg ttcgcattgt cctaagcttg ggagaggcaa aagagaagac       960
     aaagatggtg agaagaccaa caacaacaag cccaacaaac aagtcgaagg gttcatacca      1020
     agggaggaag atggagaatc ttaggaaggc ttttcaacaa gtttgcgccg ccttcgagcc      1080
     actaagtgat gtagatggtg aaagtggaga tgatgataag ggaaagaaca tctccgatgt      1140
     ttgcttcatg gcgcgtggtg aatctgacac agagtatgaa gataatgagg taagtgcttt      1200
     tgaggaagct attaatattt tgagtgcaaa aaataagaag tgtgagaaga tgtatagaaa      1260
     acaggaattt atcattgaat ctcttaaatc tgaaattgct agattaaaat ctcttattcc      1320
     taatgatgat gattgtgaaa attgtgaggt tttaatgaat gagatttcaa aaattagaga      1380
     tgttaatgct gcacatgatt tgaaaaatag atcttctctt gcttgtagtt ttgctttgca      1440
     cacacgcact ttggatgagt tgtttttaac taaaaagttg ttgcaaaaat atcaaattgc      1500
     ttttcatgct agtttgatgt ttaacatgat ttctgctaaa aagttaaaac aacctcatga      1560
     tgttttggat tgctcaacat gtaatttgaa taagatgaaa ctaaaagatg ctttaggtcg      1620
     tgttgagtac atggaagatg ttgtgaaaaa caatgaagtg ctttcttgcc ccaaatgtcg      1680
     taaaagcaaa ggtgtcatgg tagattgtga aaattgtgct aatttggaaa aagaggtttc      1740
     ttatttgaaa aattctttgc taagattttc tgatggtaaa aagaacctca acatgatttt      1800
     ggatcaatca aaggttagca cacataaccg tggtttaggt tttaatcctt atgctcataa      1860
     ttctagacat cctcctgttg tgttaggtgt tggtgctaga agtggtgaga ttttggttaa      1920
     acctgatact aataaaactg tgtttaaatc tgctggtatc atgtctacca tgaatgcatc      1980
     ttcttcaaaa tccaatgttg tgcatgcaaa acctcctgtt gttgcttgtg ttgctaaatc      2040
     ttctaattct accaatgtgt ctaatcatcg tgaaaaatat acttgttctt tttgtggcaa      2100
     agatggacat attgttggtt tttgtttcag attagctcat aaacagaaaa aggagagaga      2160
     gattgctttt gcaaaatcaa agtggcaaaa atctggtttt ccctcgagga aaccggtcag      2220
     accgcagtgg gtcccgcggt cagaccggcg accggtcaga ccggctrctg agcctcggtc      2280
     agaccgggca ccggtcagac cggcggtaca gaggcggtca gaccggcccc cggtcagacc      2340
     ggccactgta cctcggtcag accggcctcg gaggaatttt tctgaaaatt ctaaaattga      2400
     ttttgcacgt ggatatatgc ctattggatc ttctggtcgt gtgtctcagt actggattcc      2460
     taaattttta ttatcatcta accccagtac tgaggcttcg acttctgctt gtgtgtaggc      2520
     tttggtggca aggaaggaga acgtgtggat cgtggattcc ggttgttcgc ggcacatgac      2580
     cggtgataaa aattggttct cctccctcaa aaaggcatcc aagactgaat cgattatctt      2640
     tggtgatgct tctacaagtg ccgttctcgc tacaggtttg gttaaggtaa atgaaaaatt      2700
     tgaattgaag aatgtagctt tggttgagga cttaaagtac aatttgcttt cagtttcaca      2760
     aattgttgat gaaaattttg aggttcactt taagaaaact ggaagtaaag tttttgattc      2820
     ttgtggtgat tctgtgttga atatttctcg ctatggaaga gtgtttaaag ctgattttga      2880
     aaatcctgtt tcacctgtga taacatgttt ggttgctaag tttgataaag atgtgatgtt      2940
     ttggcatcgt agacttggac atgttggttt tgatcatctc actaggttaa gtggtttgga      3000
     tcttgttcgt ggtttgccta aacttaagaa agatcttgat ttggtttgta caccgtgtcg      3060
     tcatgctaag atggtttcta cttcacatgc tcctattgtt tctgtgatga cggatgcacc      3120
     gggacagcta ttacatatgg acactgttgg tccagctaga gtgcaatctg ttggaggaaa      3180
     gtggtatgtg ttggttattg ttgacgattt ttctcgatat tcttgggttt tctttatggc      3240
     aactaaggac gaagcttttc aacactttcg tggtttgttt cttcgattgg akcttgaatt      3300
     tcctggttct ttgaaaagaa ttcgaagtga taatggtggt gagtttaaaa atgcttcatt      3360
     tgaacaattt tgcaatgaaa gaggtcttga acatgaattt tcttctcctc gtgttcctca      3420
     acaaaacggt gttgttgaaa ggaaaaatcg tgttttggtt gagatggcta gaacgatgtt      3480
     ggatgaatat aaaactccta gaaaattttg ggctgaggcg attaacactg cttgttatat      3540
     ttcaaatcga gttttcttga gatctaaact tggaaaaact tcttatgaac ttcgatttgg      3600
     acatcaaccc aaagtttcac atttgcgtgt ttttggttgc aagtgctttg tcttgaaatc      3660
     tggaaatttg gataagtttg aggcacgttc taccgatgga ttgtttcttg gttaccccgc      3720
     acatactcgt ggctatcgtg tacttatttt ggrgactaac aaaattgttg agacttgcga      3780
     agtttctttt gatgaggcta gtccaggtac tagacccgat attgcaggta cactgtcaca      3840
     ggttcagggg gaggatggtc gtatttttga agacgagagc gacgacgacg acgacgacga      3900
     ggtcggctcg gccggtcaga ccgggcgcca ggccggtcag accgccggca cacctccggt      3960
     cagaccggca caggaggtgc ggtcagaccg gccagggtcg tcgggttcgg gtactgttga      4020
     tgctgatcga gatggtcctc cagagattac tacttcgacc agtactgata cagaacgtgg      4080
     atcaacttca gaagtcgctg ctcctttgca cattcaacga cgacatccgc cggaacaaat      4140
     tattggtaat ataggtgagc ggactacaag gtctaaggta acgactcatg atgtttgtgc      4200
     aaattctgca tttgttgctt cttttgaacc caaagatgtg tcacatgcat taactgatga      4260
     atcgtggatt aacgccatgc atgaagaact tgaaaatttt gagagaaaca aagtttggac      4320
     tttagttgaa ccaccttctg gacataatat tattggaacc aagtgggttt tcaaaaataa      4380
     acaaaatgag gatggtttga ttgtgagaaa taaagctaga cttgttgctc aaggttttac      4440
     tcaagttgag ggtttggatt ttgatgaaac ttttgctcct gttgctagaa ttgaggcaat      4500
     tagacttttg ttggcttttg ctgcttcaaa aggttttaaa ttgtatcaaa tggatgtgaa      4560
     aagtgctttt ctaaatggtt ttatacagga ggaagtttat gtcaaacaac caccaggttt      4620
     tgaaaatcct gattttccca accatgtttt taaattgtct aaagctttgt atggtttgaa      4680
     acaagctcct agggcatggt atgataggct taagaacttt ttgcttgcga aaggttttac      4740
     aatgggaaag gttgacaaaa cgctttttgt tcttaagcat ggtgataatc aacttttcgt      4800
     tcagatttat gtggatgata tcatctttgg ttgttcgact cacgctttgg ttgtagattt      4860
     tgctgagact atgcgcaggg aatttgagat gagcatgatg ggtgagttat cgtacttttt      4920
     gggattgcaa attaagcaaa cacctcaagg tacttttgtg catcaaacga agtatacgaa      4980
     ggatcttttg agacggttca agatggagaa ttgcaagcca atttcaacac caattggttc      5040
     tacagctgtg ttggatcctg atgaagatgg tgaagctgtt gatcaaaagg aatatagaag      5100
     tatgattgga tctttgttgt atctaactgc ttctaggcca gacatacaat ttgctgtgtg      5160
     tttgtgtgca cgctttcaag cttctcctcg tgcttcacat cgtcaagcgg tcaagcgaat      5220
     aatgaggtat ttgaatcata cacttgagtt tggaatttgg tattctactt catcttctat      5280
     atgcttaagt ggatattccg atgctgattt tggaggttgt agaattgata ggaaaagtac      5340
     tagtggaaca tgtcattttc ttggtacatc attgattgca tggtcttcta ggaaacaatc      5400
     tagtgttgct caatcaactg ctgaatctga atatgttgct gctgctagtt gttgttcaca      5460
     gattctttgg cttttatcta ctttgaaaga ttatggtctt acttttgaga aagtacctct      5520
     cttttgtgat aatactagtg ctatcaatat tgctaagaat cctgttcaac actcacgcac      5580
     aaagcacatt gatattcgtt ttcacttttt gagggatcat gttgagaagg gagatgttga      5640
     attgcagttt ttggacacaa agttgcaaat tgctgatatt ttcactaaac ctttggattc      5700
     taatcgcttt gcttttcttc gtggtgaatt gggcataatt catccttttg gcatggtttg      5760
     agggggagtt tgtacctcat ggttttatca agcaataata tgacaatgag aaaaattgag      5820
     aaaagagagc tttgtttatg catatggtat tttcttgtgc atgctagcaa tactttgaag      5880
     gtttatttgt ctctagcata gcttgtatgt attctagtct tttcatgaga tttagatttt      5940
     gcttttaagg gagatgatgc atgacactta aattctatac ttgaattaag aaaatatgca      6000
     atgttgatgc tagcatatgg tttgatttat aaatgctcta tatatatgct ttattgactt      6060
     gttattcctc aaatagcttt aattgctcat tgtgaaaaag agaataaaaa tatgaaaaaa      6120
     atgaataccg aatccttgga aacagtcttg acgacaagga cgtattcgat gtgagcaaaa      6180
     taatgggtgc cgaatccctg gaaacagtct tgacgacagg gacgtacccg gaataaaaga      6240
     gaaaaatatg agcaaaaagg ctcaagaaaa gaaaaagtta aaaaattctc ttggttattt      6300
     tgtgctaaag gttatttgag aaagagtgat aaatgcaata ggtatatgtg tttagtgttt      6360
     attcttcaac ctatgtgctt gttaagatgt tgcattataa atcgtatgaa atcatgaatt      6420
     ttgattgttg attcaagctt aattgtaaaa tctttggttc atggttatac tttaatgcat      6480
     gcttgttatg ttatagatgg gttcatcttc tttttattgc aacacatgac ttgatatgct      6540
     atatgtatgc taagctcttg aacattaatg aacataattc ctatgcttga tgaaatcatt      6600
     gtcaaaaggg ggagaagtaa tgtgaaaatt tttggatttt tggagaagca aggtgaattt      6660
     ttggagagtt gttgagaaga gcatgttttt ggttcaattg ggaatttctt tcttttaaaa      6720
     agggggagaa gttttctttt ggatttttga gcacgatgtg tacatttgta cgaagtgtgc      6780
     tttttaccac ttttgttttt atttttccaa acaccaaaac attttttatg ggtttgccaa      6840
     tgtgttcatc aagggggaga ttgt                                             6864
//
ID   WANDERER    repbase; DNA   ; ORY   ; 237 BP.
XX
AC   U34601;
XX
DT   10-JUL-2002 (Rel. 1, Created)
DT   09-SEP-2002 (Rel. 1, Last updated, Version 2)
XX
DE   Wanderer mobile element linked to Xa21.
XX
KW   mobile inverted repeat; WANDERER.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-237
RA   Ronald C.P., Albano B., Tabien R., Abenes L., Wu S.K., McCouch S.,
RA   Tanksley D.S.;
RT   "Genetic and physical analysis of the rice bacterial blight
RT   disease resistance locus, Xa21.";
RL   Mol. Gen. Genet 236(1), 113-120 (1992).
XX
RN   [2]
RP   1-237
RA   Bureau T., Ronald R.P., Wessler S.;
RT   "Mobile inverted repeat elements of rice.";
RL   Unpublished (1995).
XX
RN   [3]
RP   1-237
RA   Ronald R.P.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (22-AUG-1995)Pamela R.
RL   Ronald, Plant Pathology, UC Davis, Davis, CA 95616, USA.
XX
DR   GenBank; U34601; Positions     415     651.
XX
SQ   Sequence 237 BP; 77 A; 44 C; 51 G; 65 T; 0 other;
     gccaatcttc ccagcacatg atgtgcgcac ggaaaacgaa gcagttcatt agcgcgtgat        60
     taattaagta tttgcttttt tttgcaaaaa tggattaata taatttttta agcaactttc       120
     gtatagaaac tttttgcaaa aaacacattg tttagcagtt tgaaaagcgt gcgcgcagaa       180
     aacgaggggg agaggatggg aaccagcaat gccgaacaca accttgacca ttttcgc          237
//
ID   SZ-62LTR    repbase; DNA   ; ORY   ; 4946 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice long terminal repeat SZ-62LTR.
XX
KW   Long terminal repeat; SZ-62LTR.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4946
RA   Jiang N., Wessler R.S.;
RT   "SZ-62LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2(8), 51-51 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4946 BP; 1450 A; 1074 C; 1017 G; 1405 T; 0 other;
     tgtaacatcc tgaaaattca agacaataaa aatcactaaa attttgaact ttttaaaact        60
     tttgcatcat gctggttgtt atgattgcta ttgcttgcca aaccgtaaat gatcacaaag       120
     aaagtaaagt aagggtctaa aatttaagta atagataaat ttacgagaat ataatatcgt       180
     taatcctaca aataattatg cacaagatag ttaagtcaaa tattaatttc tattacaaat       240
     tacagatcag gtattaaata ttcgaaccat gattgatagc ttgatgtcac atttagctaa       300
     agaaatagta agattaaatc taattcattt gaatcgaatc tcacatgaaa tataagaaca       360
     catgaaatga aatgatgatc accactataa tgatcgtgtt tataaataag taattcaccg       420
     gaatatatag attgatactt agaacatttc accgagttac tcatgacatg aaaatcactc       480
     atataaaata atggtcatat aaataaatta agctttatat ataaataaga gtaggtgagt       540
     gtttaattag acaattagat taatattgta ccgagtctca atttatattt atcgaaatac       600
     tagatccacg taaaatacat tattatacaa ataagttcat tcaatgtgct attgtaataa       660
     taatggccac attagaatgt tttaattaat tttggaaccc tcaaagcctc caaaattatc       720
     taggttaatt ttggaattat acctcattta aataatgcaa tagaaaaata tatataaaat       780
     atgggtaata ttagaaattg agtaaacttt catctaaatt aacacatcta ttgggtaaac       840
     attaattgtg tgaaatttag aatttatggg acaagatttg aatagcaaat caaccaaata       900
     ggtaaaatag aaaaaaatca ctattcattg ccccctaggt gttcgatcgc gttccctagc       960
     cctagcctct cctctgccac gcgccgcgcg ccgctccgcc tctcctctgt cgtcgccatc      1020
     accgcgcgtg ccgccgctgc ctgccgccgc gccgacgtcg ccgcgcgccg cgcgcccggc      1080
     cgccccgagc cccgtgccgc cgcaccgccg tcgccgtcgc gccatcgcct cgtgcctcgc      1140
     gcccgcacgc cgctcgcccg tcccgttgac cgcgacgcga gcctgccgtc tcgcgccccg      1200
     cgccgctgct gtgcgccgtc gctgtcgcat cccgtccccg ctgccacgcc gagcgctgtc      1260
     gccgtcgcgt cgccattgcc gcgcgccgcg agccgtaacc gacgcgctga cgcaccttcg      1320
     agccccgtgc cgacgctgcc gcgctgtcgc cgacaccgtc acatcccgcc tcgtgccgtg      1380
     cgccaccgct gccgccccgt caccgccccg agccccgcgc cgccgtcgca tcaggccgcc      1440
     gcccctcccc tctccttctc cccctctttc ctataaatac tttccccctc cattttcccc      1500
     acgtcatttt cctcttcctc ccctctctcc ctccgctgcg ccaccgtcct cgtgccgctg      1560
     cgccaccgtc ctcgtgccgc tgcgccaccg tcctcgtgcc gccacgccgc cgccctcggt      1620
     gccgccgcgc cgcaccgtgt gccgagccgg gtgtcgccgt cgccttgtgc cgccgtcgtc      1680
     gccaccgctg cgctgccgcc gtcgtcgccg ccgccaccgc cagtgagcca tctttccccc      1740
     ccccccctcg cgtccaccac cgccgccgct cgggtggaca agagccgaga gagaaagaga      1800
     gaggaaagga aaggccggta ggaaggaaga agaaaagaga agagaggaag agaaggaaaa      1860
     gaaagagagg agaaaagaaa aagggaaaga gagagaaaag ggaagagagg tagagtgggc      1920
     cccacctgtc agtcactata gctgtggata aggttgtatt ataaataaat gaattaggaa      1980
     cagtgccttt ttacaatttc tcggatttat tcaaatttga atctttacac tagcataact      2040
     tattcatttt aactcggatt taagtaaaac ttgaacctaa attcatctaa attcataagc      2100
     tttctaatgg tatataattt actacttaat aaaatatatt tataataata aattaattaa      2160
     tatcaaatgg ttggataata gttaacctaa atagtgtgcc aataaataaa aatggatatt      2220
     gtatagtagc ataattatct ttaatgtgtt ttgtcacagt agcaaccaca taaattagtt      2280
     ataatcaatc ctttataacc aaatccatga cttataaatt atttacataa agtttagcct      2340
     catattttat aaacaaaaat ataaacacgc ctagatgaat ctttaacttg tttaggagag      2400
     taatcacaga gctagttgta tttggaccac ttaaaaatta gttgatacaa tgtcatgtga      2460
     agtagaatat atatatatat agtcagttga tatccattag ttaaacaaac agagccatct      2520
     taaaatcaac atgtgttgta tagcttatag taaaaagcaa ctactcaaat atatgataca      2580
     ataataagac attgttgctt acacatatac tatacgtccc attatagttg tacggtatag      2640
     tattaatttg cgtatattaa ttagagggag tgtatgacaa acatgtatat tagataaata      2700
     ctagtataaa tcttgacctc atatgattat aattatagtt caactgtaaa tatggattat      2760
     tcattgtaaa attatgtgat gggataatcc gtaaccataa tatgattaac ctaaacaatt      2820
     ctaacataca aagcatgggt aattgttaac cttttataat ttattttgac aagcgaaata      2880
     tgtacataat taaaataaag cctccattaa taaaataata atacaaatga ttcacagtaa      2940
     ttatttgacc gatccaaaat ccatccggca acagaacctc tagtgtataa ccgttctatt      3000
     tagatagatg catgtgtaac cataatcctt ccttagccat tagctagact gaaccaccat      3060
     gacaacagaa agactaagaa accttagctc ttagcttgat tagagtccat tagcaagcgc      3120
     gaataatatg agcaacctta ggttcgacct cagcaaatat attttgtttg tgcatatttg      3180
     attgttgctt gaatattggc ttttctcgca tattatagac tttgtgtatc ggttagtcgt      3240
     gaggcaacgt ctgcaacttc cgggaggtga aggttgatca agattatatc gagaataggg      3300
     attatcctga gcaggcaagt catcactatt ccttgaacat gttgatccca attgcgaaat      3360
     tgttttgttt acaaataaaa ttgcatgcaa tgatgaacat cctacttgtg attatgccat      3420
     gccttgatta ttgtttaccc ttaaatcttt gtagccatgt ttacgtatga gtccctagtc      3480
     aactatgaca attgcttaga aatgctattg tagaatcatg catactcata tttatcaaat      3540
     gctatatgct tgggcaatta cctttgggaa ggtaattgag atgcggcatg tggagacatg      3600
     agcgccacat tgccatgatg ttgatgacat gatttgtgaa aggagaaata aaattaaaca      3660
     actgttttcg actagggcgg acggaggatt tgggtggtat ctggaaaagg ctagtaccgt      3720
     ccccggtcaa ttaaggaccg agccatgaag ttaagcatga aacgaccccc gtacaaccgt      3780
     acttctcgaa tgggtataga cctagcggac tagatagctg agcggaggca gtatccatgc      3840
     atagtggttt cttgatgtgt gaggcagggg ctctacggtg gggcagccat tggtaggacc      3900
     gcgaggcggg tgtctacagt ggtgtcgcca tcggtaggac tgccatgtga gaatctaaaa      3960
     cataattata acttaatgca tgtgtgagtc tttccttccc gggtgcgcca gaactcctct      4020
     cactgctaga aaccgtgtac gcctagagtg catgaggatt taagttcatg gagcgggtac      4080
     tgccaatgcg aggttatcga aaagctttgc cgtgacgcgt ctcatgtgtt gggacgaggc      4140
     tcatgtgttg ggcagtcgcg gagtgcgggt aaagtgtaca tccactgcag tgtgagtaaa      4200
     ccaaatctat tcgaatagcc gtgctcgcgg ttattgagca ccgggacatg tattacactt      4260
     ggctagactc taaattctta acttgtgggg gatgggatat tgcatgatga attttatgct      4320
     gatggagcca cttcccgaga ggagggaagg tggacatcct cagaaaacca tgacgattca      4380
     atggcgggaa gctatccttg ggatcacaat ggatggtgga cagaaccgtc gttgtttaaa      4440
     gtgaacactg gtactaaaat ttgatcagtc tatgctaggt tttaggcttg tgaaaagaat      4500
     tgtaaaatta gctttatgca aaagaacctg aagccattcc ttgaaatacc ctctatcata      4560
     tacattgttg ttgtggtggc ttgctgagta cggttggtac tcacccttgc tatttatata      4620
     tcttttagga gagtgttgaa gagaagccct tgtcggtacg cttgcgtatc ccacaagatg      4680
     atcggagtgc ggtcttgttc taggtctcgt tccccagtcg actgcctgtg gcatgttaac      4740
     cgggccctta tattattttg tcttccgctg ttgttctctg atagttgttg gcctacctgg      4800
     ccctaatgta agtatttaac tcttttagtc tgaattcatt cgtgatatgt tgtgatccaa      4860
     ctatgtatgt gtgtaccaac tactgatcca gggattggta cggataaaca cagaagattt      4920
     ccgatttcca aaatcggggg tctaca                                           4946
//
ID   SZ-7LTR     repbase; DNA   ; ORY   ; 582 BP.
XX
AC   .
XX
DT   13-SEP-2002 (Rel. 7.08, Created)
DT   13-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   Rice gypsy-type long terminal repeat SZ-7LTR.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; Long terminal repeat; SZ-7LTR;
KW   retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-582
RA   Jiang N., Wessler R.S.;
RT   "SZ-7LTR: a gypsy-type LTR from Oryza sativa.";
RL   Repbase Reports 2(8), 52-52 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 582 BP; 155 A; 142 C; 121 G; 164 T; 0 other;
     tgtcaggatt acggataagg catacctcct atcttaccac ttatggaata taccgataag        60
     gtataccttc acgtacacgg atcgttccaa catacgttgt aggaatcttt acaaattatg       120
     gaaaatatct ccacgggtca aagtaatttc caaagtccta ctcggaaggg atagttcctg       180
     tggtatcgtg caaggtccga tatctccgag tcttacttgg ggatcaagat gatccacggt       240
     ataaaaggga cccccacgga ggggtgcaag gcatcgcata tcatcaccta cacacccacc       300
     atagtttacg aagccggagt atgcgaagcc aagttgttgg gagatctcgt cggatacacc       360
     gactacgatc tcgttggtat cgtcggtttc gtctacttcc attgtaatct gtgtttttcc       420
     atcatcaatc ccatataaac tggactaggg ttattacctg ataaggcgca tgaaccagta       480
     taatcctttt cttttatttg cttgatgttg tactacgtag attctcgttc caacggaccc       540
     caatacccaa atcattcggt ccacgggtat cccccgtcga ca                          582
//
ID   CLOUD-3     repbase; DNA   ; ORY   ; 550 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice Mutator-like non-autonomous DNA transposon CLOUD-3.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; CLOUD-2;
KW   CLOUD-3; Mutator-like; target site duplication.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-550
RA   Jiang N., Wessler R.S.;
RT   "CLOUD-3: a Mutator-like non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Repbase Reports 2(7), 10-10 (2002).
XX
CC   [1] (Consensus)
XX
CC   9bp target site duplications. Similar to CLOUD-2.
CC   Original insertion in STOWAWAY2_OS.
XX
SQ   Sequence 550 BP; 166 A; 96 C; 87 G; 201 T; 0 other;
     gagtaaattg tattagtggt acacaaattt gttataggtg ggtgcaattt agtacataaa        60
     cttgtaaaat gctcgtttca gtacatgaac ttgcctagtt cgtgagaacg aggaccaaaa       120
     taacttggca atgttaattt tataaatttg atattgatta ggatgtgacg tgcatacgtg       180
     cagtgattat gtataagaca tgcaatattt ataaatttag tctctacttt atccttcatg       240
     gttgaaatga tgaatttcat atgtttctaa cccttatatc aatgctcgat tttttaatct       300
     ttttctacat tcactaaatc ctattctata ttttattgaa taggtgtatg tctaatggca       360
     accttctcat atatatgttt acatagtatc ctaatcagcc cctaaatcaa taacattagt       420
     catgtaatgt cctttttgac ttccccgcac gcaccacgca agttcgtgca tcaaaacgag       480
     tattttttaa gtttgtacac tagattgcac ccaacctgat aagttcgtgt accgacgatg       540
     caatttactc                                                              550
//
ID   SZ-56       repbase; DNA   ; ORY   ; 5649 BP.
XX
AC   .
XX
DT   16-AUG-2004 (Rel. 9.07, Created)
DT   16-AUG-2004 (Rel. 9.07, Last updated, Version 2)
XX
DE   Rice retrotransposon SZ-56.
XX
KW   LTR Retrotransposon; Interspersed Repeat; SZ-56; SZ-8.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5649
RA   Jiang N., Wessler R.S.;
RT   "SZ-56: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 110-110 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-56 has 425bp LTRs. Internal region is related to SZ-8.
XX
SQ   Sequence 5649 BP; 1527 A; 1163 C; 1417 G; 1542 T; 0 other;
     tgtcaggcca agccttggaa ggactcaggc tccaagaggg agggctgacg ataagtctga        60
     agaatctgaa gaactgaaga tggacggcaa ggcagatgac gcgctacagg gcgacaggga       120
     ggaggcgcct atcctgggct gggggcgtcg tcataagaag cccagtgtgc gtgttgtcgg       180
     gccagagtgg gtcaagtaac taagtccatc ctgcgcgatg gcgtgcgtga gttgtgctgt       240
     tccgacagct gtcatgaggt gttgagactg atataaacag gagaacgaac agaggagagg       300
     gtatgaactg agatcacttg gaggcgatgg cggcggaggc ctgatcctgt tggattagga       360
     taatacaatc gtgatctcga atatctgagt ccttagctag tttgctcttg ttagtaaccc       420
     taacaaaatt ggtatcagag ccaaactcgc ccctctaatc tcttgattcg gctgtgaaat       480
     tccgggggaa ggattggggc tgttcttcgg atcagacccc gcgaaaaggc aacttgcctt       540
     cctcaggtta gctgaattcg gagcgtgggt gagttggtgt gtgagatcga gacgagagtg       600
     gaggtatggc gcaggatagt aagttggatt tgctgttgaa gtcaatggcg gaaaacgaga       660
     agaaacggga agaggctgag gcccgcatgc gagctgattt cgcagaactt aagaagtctc       720
     tggagatcag gttgcccgcg gtggagaaga aggtggatga cctcgggatc gatctggtgg       780
     cgctgagtaa caaggtggag caattggagc acaaccccaa tcagcctcct tcaggagatg       840
     aattcgccgg caaggtgacg accgtggcgt tacccaagaa ggagccgatc tacaaggcga       900
     caccaccgac caaaggtacg cgtgagcttg accccacttc tcctgttcat cattcaaatg       960
     agggttgggg atctcagttt gaaaacacgg ggttcagtgc caggatgatt ggtaatgtac      1020
     cgcccatgtc ctgtccgcaa ttcaacggag ataaccctca catgtggaaa tccaactgtg      1080
     aagtgtattt tgatgtgtat gggattcatc ctcaaaattg ggtcaaggta gccactctga      1140
     atttttgtgg gaacacagcg ttctggcttc agtcagtgag ggctcagttg atgggggtca      1200
     cttggtttga attatgtgac agagtttgtg ctagattctc tcgggacaga cagcaagctc      1260
     ttattagaca gtggattcat gtttctcaga cttcttctgt ggctgattat gtggataggt      1320
     tcgatagtat catgcatcaa ttgttggctt atgggggggc aaatgaacct atctattttg      1380
     tgaccaaatt tgtggatgga ctcaaggaca atatcagggt tggtgtgatg gggcacaggc      1440
     cacaggacct ggacactgca tgtactttag ctcttttgca gaaagaagct ttggaaggtg      1500
     tccaggctat caatgtcaag aaaaatgact ctggaacctt tgttaaatct aaatccacct      1560
     caaatttttc tcagtctgtc cttcctagca agagtacagc cttgataaat actgaagaga      1620
     aaaggagtgc agagtttagc aggcccaagg atgataagat atcggccctc agagcttaca      1680
     gaagatcaaa ggggctctgt tttgtttgtg gtgagagatg gagtaaggat cacaaatgtg      1740
     ctacatcagt ccaactccat attgttgagg agttgattca tgccctgcaa tctggaggtg      1800
     aagaaaatag ctgttctgat ggaactcctg aaattgatga cgattctttg atggcaatat      1860
     catttcatgc tttgcatggt accgattctc ctaagtcaat tagactcaga ggctgggtcc      1920
     agggtacaga gttactcatg ctggtggatt cgggtagtac tcattctttt attgacacta      1980
     agattggctc caaattgcat ggtgtccaga aattacttca gaccattaag gtacaagtgg      2040
     ctgatggagg gcagatagct tgtgatatgt ttttgcctaa gtgcaactgg tggacacagg      2100
     gtcataattt taccagtgat ttcaggttat tgccactggg taattatgat gtgatattgg      2160
     gaatggattg gctggagcag tttagcccta tgcaaattga ttggattcat aagtggcttg      2220
     aattccaaca tcaacatcag ctggtgaaac ttcagggcat tgttcctcag actgattgct      2280
     gtccaaccat aacaggagca cagttacagg gtatgtccaa gaatggatct atcatgtgta      2340
     tggttcagct gaatgctgtg gaagttcctg aacatgctgt catccccact attgtacaac      2400
     ccttacttca agaatttcag gaactattct ctgaacctac tgaattacct cctaagagaa      2460
     catgtgacca ccatattccc ctcattgaag gagccaaacc tgtcaatttg agaccctacc      2520
     ggtataagcc agctctgaaa gatgaaatcg aaaaacaagt cactgaaatg cttaagactg      2580
     gagtcattca acccagccac agtcctttct cttctcctgc ccttcttgtc aagaaaaaag      2640
     atggatcctg gcgtctctgt attgattatc gacagttgaa caatatcact gtcaagagca      2700
     agtatcctgt cccagtaata gaagagctgt tagatgaatt atcaggggcc cagtggtttt      2760
     ccaagttaga tttaagagct ggataccatc agatcagaat ggctgaggga gatgagtata      2820
     aaacagcctt ccaaactcat tctgggcatt atgagtacaa ggtgatgtcc tttggcctta      2880
     ctggggcccc agctactttc cttaatgcca tgaatgacac attgtcccct gtcctaagga      2940
     aatttgtctt ggtctttttt gatgacattt tgatttatag tcccacattg gaatcacatc      3000
     tgctccacat cagaacagtt ttacaattac tctctgctag tcagtggaag gtcaaactaa      3060
     gtaagtgttc ctttgctcaa caagagatat cttatttagg acacgtgata ggagttcaaa      3120
     gagtatctac tgacccacga aagattcaag atgtagttaa ttggacccaa ccaactacta      3180
     tcaagaagtt gaggggcttt ctgggcttag caggttatta tagaaaattt gttaagaatt      3240
     tcggtgtgat cagccgaccc ctgactcaat tactcaaaaa gggaatacca ttcaagtgga      3300
     ctgaggaaac tgaaactgct tttcaacaac ttaaacaagc attatgctct gctcctgtac      3360
     tcgcattgcc agatttttct aaatcattca ctgtagaaac tgatgccagt gaacttggga      3420
     ttggagctgt tctttctcaa gacaagcatc ccattgcttt ccttagcaga gctcttggtc      3480
     ctaaaactaa acgcttgtcc acctatgaaa aggaatacat ggctatattg ctggctgtag      3540
     aacattggag accatacctg cagcatgggg aatttactat cctcactgat catcatagtt      3600
     tgatgcattt aactgatcaa cggttgcata ctccttggca acagaaggct ttcactaagc      3660
     tcttgggtct tcagtataag atctgctatc gaaagggttc ttctaatgct gctgccgatg      3720
     ctctttcaag aagggagcca tttaccagtg agatacacgc tgtgtctgaa tgtgtaccgc      3780
     tatggatgca agacctgatt caaggttatg atcaggatcc tcacaccaag cagatcattt      3840
     cggagctaat tgtcaatggt agcagcagac cccactatca attgtgcaat ggagtattga      3900
     agtacaaggg cagaatttgg gtgggagaca atcctgcatt gcagcacagg atcatcactg      3960
     aggttcactc tactcctttc ggtgatcact caggttttcc tgtaacctat agaaaagcta      4020
     aaggcatgtt tgcttggact ggaatgaaga aaatgattaa gactcatctg cagtcctgtc      4080
     aagtttgctt gcaagccaag ccagacaggg ctaaatatcc tggactactg cagccgttgc      4140
     cagttccagc tggagcatgg caagtgattt cgcttgattt tatagaaggg ttgccacgtt      4200
     catctcatta taattgtgtg ttggtggtaa ttgataagtt ctccaaatac agtcacttta      4260
     ttcccctttc ccaccctttc acagcaagtg cagtagctca agagttcatg aaacacatct      4320
     acaagctcca tggcctacct catgtgatta tttctgatag agataagatt ttcacgagtc      4380
     aattttggga gcagctcttc tctaagtctg gaactaaact gcataaaagt tcagcttatc      4440
     atcctcaaac ggatgggcaa accgaacgag ttaatcagtg tctggaaatt tatcttcgtt      4500
     gctttgtgca tgctactcca aggaagtggg catcttggta gtatcttgct gaattctggt      4560
     ataacaactc ctttcactct actttgggca aaactccttt tgaagtctta tatgggtaca      4620
     ctccagctca ctttggcatt actatagagg attgtcagat cactgatttg caggaatggc      4680
     ataatgagcg gaagctgatg caacagttat tacagcagca tcttcatcga gctcaacaac      4740
     agatgaaaca tcaagctgat aagaaatgca gtttcaggca gtttaaagta ggggattggg      4800
     tgtacttaaa actacagcct tatgtacaga cgtcggtagc tcaacgtgct tgtcacaaat      4860
     tggctttccg ctactttggc ccatttcaga ttcttgacag ggtgggatct gttgcttatc      4920
     gcttacagct accagctggc agttccattc atccagtgtt tcatgtgtcc caattacgag      4980
     ctgctgtggg gttttctaaa ccagtgcaag aggaattacc atcttccttg ggagcatttc      5040
     agattcccct ccaattcttg gataaacgtc tgactaaaaa aggtaatcgc gttgtggttc      5100
     aattactgac gcattggtca gattcatctg cagaggattc cacttgggag gatatggagg      5160
     atttatgcaa tcgctttccg cgagcattgg cttggggaca agccaatttt caagaatggg      5220
     ggattgtcag gccaagcctt ggaaggactc aggctccagg agggagggct gacgacaagt      5280
     ctgaagaatc tgaagaactg aagatggacg gcaaggcaga tgacgcgcta cagggcgaca      5340
     gggaggaggc acctatcctg ggccgggggc gtcgtcataa gaagcccagt gtgcgtgttg      5400
     tcgggccaga gtgggccaag taactaagtc catcctgcgc gatggcgtgc gtgagttgtg      5460
     ctgttccgac agctgtcatg aggtgttgag actgatataa acagaagaac gaacagagga      5520
     gagggtatga actgagatca cttggaggcg atggcggcgg aggcctgatc ctgttggatt      5580
     aggataatac aatcgtgatc tcgaatatct tagtccttag ctagtttgct cttgttagta      5640
     accctaaca                                                              5649
//
ID   TRUNCATOR   repbase; DNA   ; ORY   ; 2918 BP.
XX
AC   .
XX
DT   09-SEP-2002 (Rel. 7.08, Created)
DT   09-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   Rice gypsy-type long terminal repeat TRUNCATOR.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; Long terminal repeat; TRUNCATOR;
KW   retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RA   Song Y.W., Pi Y.L., Bureau E.T., Ronald C.P.;
RT   "Identification and characterization of 14 transposon-like
RT   elements in the noncoding regions of members of the Xa21 family
RT   of disease resistance genes in rice.";
RL   Mol. Gen. Genet 258(5), 449-456 (1998).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2918 BP; 913 A; 673 C; 691 G; 641 T; 0 other;
     tgtcacgccg gaatttctat ccaaaattcc aaacgcttac atgtgtgtga accctcgtcc        60
     aggaatcagc cgagacacac aataacaaat tgataataga gtacaattat tactctaatt       120
     aataagcgta taaaatgtca ttacagaggt agatagttcc tctcaatcaa taaagatcta       180
     agcagcggaa aaataagata aacggcgcag acggctccac tccacaggca gcttgaccaa       240
     ggctacacct aatcctccac accatcagct tcactgtaga actcttcctc tgatgaatga       300
     ttgcaaggtg agtatatgac atactcagca agccacgcag caaatatgca agtgcacagg       360
     ataacaaagg atggcatagt agggttttat ttgcaaaagc agcatttagc aaacatttga       420
     gaatttaata aaacagttaa gtaattaaac aatattaatc caacgctata caacataccc       480
     tgttgtatag gcccaaccat tctgaacaac catcccggct gcacagttct atctccaaac       540
     caggaatata ccattccaaa ccaggagcta atcaaattat taccaattaa agcacctttt       600
     attatgatga gaagggtgag actaatcacg aaagatattg ttagacccgc ctataaccgc       660
     gggcacggct attcgaatag ttttactctg atcagaggtg taccactgta cccacaagac       720
     acaaccccac atcatgtcac catgtgcctc aataccacca cggtacctcg gaaaggagtt       780
     gtgacaatac cccttgcata acacaatcca ctgcagtgca ccttcctgga tcataatcac       840
     ccccttaaaa acaaggcatg gactccccag cgaccctcgt gggcttatct ccgccacttc       900
     tcagtctggt gccccgcaat gaaccatgct atataaaaga taaagccgtt gcccatgctg       960
     gcttatggtt ggcacggtta atgtttcaca accgaaactc gtgaaccggt ccttaattgt      1020
     catgagcacg accatcaaaa ccatgtgctc acaacccacc attatcaggt tttagttggc      1080
     aaataattaa ttaacaaatc acgattgacc atcgtgaact atcattaagc catcattaaa      1140
     taacagtgag tcataagtta tcccaatagt aagctaatgt ttctaagcag ggctaagcaa      1200
     ttatatctaa tatctagttg aaccaatata taaagctcac tagtcaaatt ataataaccc      1260
     aaggtatcaa ggaataaagt aatcaataac aaaagggcta taacaaacaa taggttaatt      1320
     ccacccaatg acattcgaaa ataaatgcaa tatttgaata gaaacaatag ctttaaatag      1380
     gatcaacatg ctcaaagggt tgtatgggat ctgtgtgact tgccttgctg gccttggaac      1440
     tcttcaaact cttctccggc gaaaacggac tctccggaaa cgacggaatc taaacaaaaa      1500
     gaagcaaaac caccaaaaca gcacataaac caactaaatc ggagctaaga tgaattagtt      1560
     atgaattttt gaagattaaa tcggattaaa acacttaaat tgattttaat tgaattatga      1620
     cgcaataatg aattattttt gaaaaggaaa aggaggatta ttgcgtcagc gggctagggt      1680
     ttcggtggac cgggcacaca ggcgacggct cacgcgaacg gacggccgag atcgacttga      1740
     tccaaaacgg acggccgaga tcgaacggtc cacgaccggc tcacagcgaa cggccccgat      1800
     gacgtcggcg atgacgtcac caccggcggc ggcggctcgg cggctcgggc ttgcacgctc      1860
     gccggcgaac gacggcacgg cggcgcgaat ggaaggcacc aacgggtaga gcgcgacgcg      1920
     gcgaactcac cggtgaccaa aagagcggcg gaagatcaat ggacggcgac ggcgacgagg      1980
     aggaagcggc ggcaaacttc gggtcgacgg tggcgacggt gctccggcgg tcttcggcgg      2040
     cggcaaagga gcggacgaga acggcggcga cttggcgatc acgacggtgg ccttcccgag      2100
     cgatgatgac gaccgagacg gcggcgacgc acggctggag cgacggctac gacggcggcg      2160
     ctaggttgca cggcgctaga gctcttccgg cgacgagagg cgaaggcgaa ggtggcgacg      2220
     ggtagaggag acaccgggga accttttaaa ggggctcgca ggcgacggcg aaggcccacg      2280
     gcggctggcg acgagaagga aggtttaggg ttcggaggag ggagacgaat ccgattcgaa      2340
     ctcgattcca acgatttcca aaacgaatta gccgatgttt ccaaaagaga aaaggtagag      2400
     gagatcccgg agattgtttc ccctctatca attcggccgg aaacggaaag gatcgatcga      2460
     atttggaagg gaacggcggc ggcgcgaaac tagggtttcg ggcggcggcg gccggaggtt      2520
     gacgacgacc ctgacaggtt ggccccacct gtcagcgggc ggacgcgcgc gcgcggcggc      2580
     ggactgggcc ggactgggcc gaggagagag agagcggttt tgggccgact ttcggcccaa      2640
     agccaaaaga gactttttaa aacctttttc aatttaaatt attcatgaaa tgtaattcca      2700
     tttattaaaa atacttcctt agctcaaata aatcccagaa aaatctagga attatagaat      2760
     taagcaaagt atttaatgaa attttatctg gccccatttt atattgtaat ttattaattt      2820
     aaaattagat cttctcttct aggcttttaa aataaattct aaaaattcca tttaaacaac      2880
     aatttatata ttttgaattt tcagggtgtg acagagag                              2918
//
ID   LINE-1      repbase; DNA   ; ORY   ; 3584 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice long interspersed nuclear element LINE-1.
XX
KW   LINE; long interspersed nuclear element; LINE-1.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-3584
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences.";
RL   Plant J 25(2), 169-179 (2001).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3584 BP; 1016 A; 810 C; 514 G; 1244 T; 0 other;
     ttgagctttt tctccttcaa cttttttaag aagcaaagac caaagccttg cccaatgagt        60
     tgccttgaat attacctgta agaaagaaat atgattatag ccattaaaga cgatgtcatt       120
     cctactaagc cacaaggccc aacaaattgc cgctatgccc tcccaagttt gtcttttgag       180
     tttaggttca aaaccattca accaattacc aaacatatga gcgcaacttc tgggttgtct       240
     aatccccaaa gtaaaataaa ccacactcca tatgtatcta gccattatac aatcaaagaa       300
     aaggtgttgt atcgactctt tagagttaca aaagctacac aataagctat ccttccatct       360
     tctcttagct agattatcct ttgttagaat caccccttta ttcaaatacc ataggaaaat       420
     cttaatcttt aatagaattc ttagcttcca aattaaagat ttcctaggta ttactccatc       480
     aaacataagt aacttataca tagagtttac gatgaacaac ccttctttat tagttttcca       540
     tatgaattgg tcaagatgac ttgtcaggtt aacattagcc actttcgaga caatgacata       600
     ccaatctgcc aagtttttcc caactatcgc tcttctaaag gacacattca acggtatcgt       660
     ttccaaaacc ttagcaagta ctgtattctt attctgaacc aggttgtaca agttaggaaa       720
     ttctttctca agagatttgt ttcccatcca acaatcctcc cagaatctaa cttgtttccc       780
     atttctcacc ttaaagtgtc caagtaattg gaatgattct tttgctgtca tgagactagc       840
     ccagaaatga gaatctcctt gctgcatttg aacctgtaga atggtttttt tgccaaatat       900
     ttttttctaa gcaaattttg ccaaattccc tcttcattga ttaacttaga gatccattta       960
     ctaagcatgc acttattttg aatctctagg ttctgaatcc ataaacctcc acactcctaa      1020
     ggtttgtaaa gtacactcca tttggccagc ctatacttct ttttatgttc atcacattgc      1080
     caaaaaaatc tggatctata atagtccagt ttctttaaga tacctttagg tatctcaaag      1140
     aatgaaagca tatacattgc tagactgctt agcactgaat tgatgaggat taacctccct      1200
     cctgttgaca gaaactttcc tttccagcta ctgatctttt tttcgaatct atcctctaac      1260
     tccttccagt ctttgtttgc cagcctttta tagtgcattg gaaggcctag atatctaaaa      1320
     gggtaggacc ctatcttgca gccaaataga aaagaaaatg ctttttctac ttccttggct      1380
     tttccgtaac agaacatctc actcttatga aaattgattt ttaagcctga aagcttctca      1440
     taggcactta gtaccatttt aagatttttg gcttcttcta catcattttc cataaagata      1500
     atggtatcat ctgcatattg taaaattgac aacccgttat ctaccaaatt cggtattaca      1560
     cctcgtgtca ttcctctttc agtcgaccta ttgattagaa ttgccaacat atctgccacc      1620
     aaattaaata aaattggtga taagggatcc ccttgtcata accctttttt tgtttgaaaa      1680
     aaatttccga tttcatcgtt gacttttaca gctacacttc cccctgtcac tatctgctct      1740
     atccatttgc accaacgttc cgaaaagcct ttcatcctca tggtctgctg aagaaatttc      1800
     cagtctacct tatcatatgc tttttcgaaa tctagcttga gaatgacccc atctaacttc      1860
     ttcctatgca tctcatgtaa cgtttcataa aggataatgg ccccttccat gatatttctt      1920
     ccttttagaa aggcagtctg tgaaggtctt atgacttttt gtgctactag agcaatccta      1980
     tttgtcataa ccttagtaaa gaccttgaaa cttacattaa gtaagcatat cggtctgtat      2040
     tgttgaatct gccttgcctc cttattcttg ggtagaagag taataatacc aaaattcaaa      2100
     ttattgagag aaagattgcc cctatgaaag tctctaaaga ctgccattag gtcatcctta      2160
     attacctccc agaacacttg ataaaactcc gccggaaaac catcaggccc tggggcttta      2220
     ttatgctcca tttgaaagat agcatttttc acctcttctt ctgaaaactc actcgtaagc      2280
     aactcatttt ccgctacgga tatttgaggt atatcatctt tttggttctc acacatagag      2340
     aaattattct tttcaggagc tccaaaaaga ttcttataat agttagagat gtacttcttg      2400
     agttgctcat tacctttaat tattccctct tcttggtcta gctggaaaat cttagttttc      2460
     ctatgctttc catttgcaat catttggtaa tatttagtat ttctatctcc tacaatttgc      2520
     cttgtttttg ctctttgata ccatttgatc tcttcttctc tcaacatctt agccaaggca      2580
     tgttttactg aattttttaa ctcgagctct tgactagtca aaagtctagt ttcagctagt      2640
     ttgtctagct catctgcctt tgccattaat ttcactttct ctttcttata agccccactt      2700
     gtattcttcg cccatcctct aagaaactga cgaagtcttc aaattttatt ttgccatctc      2760
     gcaatatttg ttgcccctct aacatctttg gtccaaatat ttgctaacag tttttgaaag      2820
     tcctccctaa ggagccaacc gagctcaaat ttgaacaatg gttgactatc cttgtgagac      2880
     cctttacacg tgtctagcaa catgggggta tgatcggaga gatctctact aagggcatga      2940
     acagtcacca atgggttttt cacttcccac tctgtgctta ccaaaactcg atctaatttt      3000
     tcatatgttg ggtttggcat ggcatttgcc caggtaaatt tgcgcccaga gagtatgatc      3060
     tctctcaaat ttaaactatt tatgacagca ttaaataaga aggaccactt aacattgaaa      3120
     tttgcattgt ttttctcctg tggtttcctt ataatattaa agtctccacc aattaccata      3180
     ggtaatgcct cctttctaca tgaattaact agttcagtga gaaaggcctc tttgtactcc      3240
     tcctgtgttg ccccataaac tgctaccaat atccattgga aagcatcctc cttatttcgt      3300
     acatgaaatt taacataaaa atctccttcg tctatgcttg acactttgaa gtattctagg      3360
     ttaacaccaa gtaaaattcc ctcacttctc cccttaggtc tcgtccaatg ccagagaaac      3420
     tctcttcctc cataaatact tttaagccac gagtcagtat acttattttt actcgtttct      3480
     aatagggcaa taaagtctag cttttgctct ttagaaattt cggacaggaa cctagtttta      3540
     gccaagtctt taagacctct gctattccaa aaaattcctt tcat                       3584
//
ID   TOURIST6_OS repbase; DNA   ; ORY   ; 334 BP.
XX
AC   .
XX
DT   09-SEP-2002 (Rel. 7.08, Created)
DT   09-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   Rice non-autonomous DNA transposon TOURIST6_OS.
XX
KW   DNA transposon; Interspersed Repeat; TOURIST6_OS; non-autonomous;
KW   target site duplication.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RA   Bureau E.T., Wessler R.S.;
RT   "Mobile inverted-repeat elements of the Tourist family are
RT   associated with the genes of many cereal grasses.";
RL   Proc. Natl. Acad Sci. U.S.A 91(4), 1411-1415 (1994).
XX
RN   [2]
RP   1-334
RA   Jiang N., Wessler R.S.;
RT   "TOURIST6_OS: a non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Direct Submission to Repbase Update (28-NOV-2001).
XX
CC   [2] (Consensus)
XX
CC   MITE, TAA target site duplications. TOURIST superfamily.
XX
SQ   Sequence 334 BP; 115 A; 50 C; 53 G; 116 T; 0 other;
     ggtggtgttt agatccaggg acttaacttt agtccctgtc tttagacact aatttagagt        60
     attaaatata gactacttac aaaactaatt acataaataa aagctaattc acgagacaaa       120
     ttttttaagc ctaattaatc tataattaga gaatgtttac tgtagcatca cataggctaa       180
     tcatggatta attaggctca ttagattcgt ctcgcaaatt agtccaagat tatggatggg       240
     ttttattaat agtctacgtt taatatttat aattaatttt caaacatccg atgtgatagg       300
     gacttaaaag ttttagtccc atctaaacag ggcc                                   334
//
ID   SZ-55       repbase; DNA   ; ORY   ; 10318 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice retrotransposon SZ-55.
XX
KW   LTR retrotransposon; SZ-30; SZ-55.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10318
RA   Jiang N., Wessler R.S.;
RT   "SZ-55: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 109-109 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-55 has 1626bp LTRs. Related to SZ-30.
XX
SQ   Sequence 10318 BP; 3118 A; 2557 C; 2010 G; 2633 T; 0 other;
     tgaaagacca agaacagcta tagagggggt gtgaatatag caattcaaat cttacccccg        60
     aaaatactca tcaagccgga tttctcaaaa atccttacta gaaccgcggc tattagagaa       120
     gccggatcta gaaaagaaga gagaaagaaa ttcccgaaac tagaagagaa agagaaaagg       180
     aatttcccaa actagaagag aggtgaggag gagataacaa aactcatcat cgcaaagttt       240
     aaattgcaag tagaatttaa attgcggaat ttaaatgaac aaggcaaaaa cgaaatcctt       300
     caaatcattt cattcaaagg tgatgcaaaa taaccgctca actaagagca aacatattcc       360
     ttcagaggaa cattaacaca aacttaaaat ctctcggaca aacacactcc aaactaatcc       420
     taatacaaaa gcctctcggg caaacacact ccaaactcac accgaaactc tctcaccgag       480
     catctcaaaa ggattacaaa aggagcaacc tccacccttg catccatctc tctatttata       540
     gcctaagacc cctaagacat tgtctcaaat atccctaggg cgaaacccta gccttgatgt       600
     aatcctggct gtccattgtt ccttagatcc gaaggaagcc tcctggatag tcgccacgtt       660
     gttgatccga gctctccacg ttgcgcgccc tcgtgcgatc cgcgtgattc cacttcaagc       720
     caatcagcgt gcaccgatcc gcgtcgtgct cctccaagcc aacgcatccg cgccacgcgt       780
     cccagagagc gcgtgcctgc tcctctcacg cctgcgcgcc accagtccga agccgtcacg       840
     tcgccgttcc tcccaccgag ccgcttctgc gcgcgctcgc gaaaaccatg ttcccgcgcg       900
     cgccatgcga aaaaccgcgt gggacccggt cgcttccttg acgaacagaa ggccgccacg       960
     cctccaggtg ccgtacgatc tcccgcttcc gcgcgcgcat gcacacacct gtgcatttgc      1020
     cgagccgagc tgggccgtcg tcatgtctag ggcctgctcg gcctggcctt caccatcttg      1080
     agtcagcaac gtgcttaggc cgggttggtt cggccttccc tgccaaccga actgccagcc      1140
     cacaagccta gtggccagct cctgttggtc tccttgccat tcaatcatgg cagcacacgt      1200
     gcacatgata catgctagct acagtaagcc gaattactgt agcagcaatg cactcggtct      1260
     tcatgtcctt gcacagtcct cttctccttc caattttctt cgcgaatccg atgcttgcac      1320
     acttgacctt gtgaagcccg ttgtaaagac ctcctcacac ggtgtccgcc caccgtgtgc      1380
     aaccttgcgt ccaatcttgt cacccagcat tcttgatcgt tctggacctc aactcctccc      1440
     tgagtctagt cccgatccgc cgttgactaa gattgactgc gatcacctgc acacacatga      1500
     gccaaacaac cgttgtcttg gcatagatgt cacaacctaa ccaatgttag tctacgcaca      1560
     cacttcttgc acttccggta cttgtcaatt tcccatcaca aaagaactat aatcacacat      1620
     ggtttcacaa tctccccctt gatgggaaca ttgacaatct caagcaaaat tttgaaaatt      1680
     tgatttttga cacaaagcaa accattttgc aaaagtcgaa ctttggtcat tttgaaatcg      1740
     cgaaaaatca agaccaagtg acaagaagaa aagggatgca aatgcaaatg caagaatgct      1800
     ccccctatgt gccaaactcc ccctttcacc aagatctaaa gcaagtttta attttcaata      1860
     agtgcaaaat tctctccccc tttgtcaatg atgccatcaa gaccaaaaag agacaaaaat      1920
     gcaaaatgaa aatgattgaa acttgcaaat tccagagttc tgagagcttt gagagttatc      1980
     taaaggcatc aaaaagtaga catggatcac acagatacaa gcatgtgctc aagcctagct      2040
     aagcatgtgc aaaagaagta tgaaacaagt tatgaatatc aggatagtat cgccagcaag      2100
     caaacagctt tcaagtggat tagtgattta gtgtgcatag ctatttctag aagaagctta      2160
     aaaggaagca aaccagctca taatcatgca agatttacat aatcaaagca atgaacccat      2220
     gctaatgtgc taatgcccag ttcataaaga gtatcaacat ggtaacaaag catagaacat      2280
     gagcttttaa tcttttctca tgacttttct ttttatgatt ttttttttaa attctttaaa      2340
     gacaatagca caatcacgac ggtccacctg atcttatcag tcagcaagtg atggttgtgc      2400
     caaacactgc cgtctgacct caatcaagtt ttccagctag agttcccatt acaggctgtc      2460
     tcagtgctat cttcggcact actcatgcgt aaacacactc agtagcccgg acaaaaacag      2520
     agataaagct tgtaaagcaa gattgataca aagtatggac gcataagcat gagcattcat      2580
     gagcatgtac tgacagttat tgcaaaaaga atgaaaacat agcatgagta tgagatggat      2640
     acttcaactt aaacaaactt ctagagcaag cattgcacat tgattaagtt caaatgaata      2700
     gtcaatttaa gcaggtttca acaagcttga acagcataac atgatcacac aagctactta      2760
     agcaaatgaa agctagacaa aagatcaaac tagcataaga gtaatacatg catagcatag      2820
     tgatgaccaa gagataacaa gcaaagctca attgaagagt gtataataca atgcataaag      2880
     taaacatgat gcaatatgtt acaaatgcat gtaaaagaaa aacaactccc cctcaaatca      2940
     agccataggg gtggatcacc cctaactcac tccgcaagaa ctcaaaatga gagcgatcaa      3000
     gtggttttgt aaaaatgtct gccaattgat tttcagattc aacaaactct agcacaatgg      3060
     tacctttctc aacattgtct cggagaaagt ggtactgtat ctcaatgtgc ttggtcctag      3120
     agtgttgaac tggaattttt gcaatattga ttgcacttgt attatcacaa agcagaggaa      3180
     caccagagaa agacagacca taatctttca gagttgaaat catccaaaga acttgactac      3240
     atgcactagc agcagctacg tactcagcct cagctgttga ttgagcaaca gaagactgct      3300
     tacgagagga ccaagagacc aaagaagtgc caagaaaatg acaagtgcta gaagtacttt      3360
     tgcgatcaat cttacaccca gcaaaatcag catctgaaaa agctcgaact gaaagggcag      3420
     aagagcaggg gtaccaaata ccgtactcaa gtgtagactt gatgtagcgg aagatgcact      3480
     tgactgcttg gcgatgtgat gttcttggag aagcctgaaa cctcgcgcac aggcacacgg      3540
     agaagtggat gtccggcctt gacgcagtca ggtagaggag ggagccgatc atgcttctgt      3600
     actcgcgctg gtcaacttct tcgccgtcct catcaggacc aagcgatgaa gtagttgcca      3660
     tgggggtggc gattggcttg cagtcggcca tgtcgaactt cttcaggagc tctttggagt      3720
     acttggtctg atgtacaaag attccttcct ttgtttgctt gatttgaagt ccaaggaaga      3780
     aagtcaactc tcctatcatg ctcatttcga attccctgct catcacatca gaaaactggg      3840
     caacaagtgc atgagaggag ccaccaaata tgatatcatc aacatatatc tggacaagaa      3900
     gaaaatcaat gccactatga agagtaaaga gagttttatc aactcccccc atttcaaaac      3960
     cattttgaag caaaaaggtt ttcaatcttt cataccaggc tctgggagct tgttttaaac      4020
     cataaagagt tttatcaagt ttgaacacat gatttggaaa ttttggattt tcaaaacgag      4080
     gaggttgttt gacatagacc tcttcctcaa taacaccatt cagaaaagca cttttcacat      4140
     ccatttgaaa aagcttgaaa ccttttgaag cagcaaaagc caaaagaatt cgaatagctt      4200
     ctaatctagc aactggtgca aaagtttctt caaaatccaa gccctcaact tgggtgaaac      4260
     cctgtgcaac tagtctggct ttgtttcgaa caattgaacc gtcttcactt agtttgtttt      4320
     tgaaaaccca ttttgttcca atcacattaa aacccaagga aggttctacc aaagaccaaa      4380
     ctttgtttct ttcaaaattt tctaactctt catgcatggc attaacccaa ttctcatcag      4440
     ataaagcatg acaaacattt ttgggctcaa aagaggcaac aaatgctgaa ttgacaagtt      4500
     cataagaccg atttttagtt accctttcac ccaggcctcc gatcatcgag tcaggcggat      4560
     gtcggttctg gatgtgtcgg ggagctgttg gtcctgatgt gccaccatca atctcctcag      4620
     ctgctgaaga tgatgtagtt ggtgcatctc ctgaaggcga tgtagtcgat ggagaaccgg      4680
     tttcttgtac tggtggtgta ctgtctagag gtggagaaat ggaatcatcg tcatcatcat      4740
     ctgaatcctc atccacaagg atgctttcat ctggaacacc tgaaatttct ggtctagctc      4800
     ctgggctagc ctcatcaaaa gtgacttcac aagtctccac aattttgtta gttgaaagaa      4860
     cataaactcg ataagcccga gaatgagtag catagccaag aaaaatgcca tccacagatc      4920
     gagattcaaa cttgtccaaa tttccaggtt taagaacaaa gcacttgcaa ctgaagaccc      4980
     tgagatgtga aacttttggt cgacgaccaa atctgagctc atatggcgtc ttgtgcaaga      5040
     tagttctcaa aaacacacga ttggagataa aacaagcagc agaaatagct tcagtccaga      5100
     actttcttgg agtagtaaac tcatcaagca tagttcgtgc catctccaca agggtgcggt      5160
     tcttcctctc aaccacccca ttctgttgtg ggacatatgg cgaagaaaac tgatgttcga      5220
     ctccagaaga atcacagaaa gattcaaatg cagaattttt gaattcagag ccattatcac      5280
     tacgaatggc tcgaagagca ctaggaaact ccaaagccaa actacgagca agagactgaa      5340
     agaagccaaa cgtttcctct tttgattcaa gaaaatagac ccaagagtag cgagagaaat      5400
     catccacaac aaccaagaca taccacttcc ccccaactga ctggacctga gcaggaccaa      5460
     ccgtatccat gtgaagcagt tgtcccggtc catctgtcat aaccattgta acaggcttgt      5520
     gggaggaaga tgtcattttc ccatgacgac atggtgcaca cacaagatct ttcggagctt      5580
     tcaacttagg caaaccccga atcaaatcca taccactatt gcgagacaag tggtcaaagc      5640
     caatatgacc aagacgacga tgccagaaaa acaaatccct attctctgag gcaatgaaac      5700
     aacgagaagg accaggagca gaagagtcaa agttagcaaa gaaaactcga ccaacttgag      5760
     aaatgttaaa aacaggagat tcagaagcat caagaactcg agacctatcc tttttgaaac      5820
     gaacttctag attttcatca cagagttgtg aaacagagag caaattgtac ttaagcttac      5880
     ttacaagcgc gacatccttc agcatgaatt tgtcattgac cttgattgtt cctttagcca      5940
     tcatgcgtcc actgctcgca tccccaaaag tgatggtctc atcaccggat gcacgagtga      6000
     gagaagtaaa ccacttggct tcaccggtca tgtggcgtga gcaaccggag tccacaagcc      6060
     aagaattact tctccccact ccaaaatcct acaagaaaaa caaagcaaat ctcgatgatt      6120
     cagtactggg gttagtgaga aatgacttag gaatccagta ctgaaccatg cgaggggtac      6180
     aagcatcttt agtgttatga gcagaattat atgcaagatg accatgtctg ttttgcccca      6240
     accttgctag gtcacgtcga gggtgcacat ctcggcgagg aaagcgagat acaccacttg      6300
     aacgacatgc acacttgaac ctctcaggga ctctagtatc tcttctagtc ctaaaacgtt      6360
     cttgtcgctc ttttctagcc tttctaaagc agaaacctac caaatgacca gctttcccac      6420
     aataggtgca ctcatacttg gttttctcta caggcttggt ttgtttctgg ttttgcttgt      6480
     gctcaacttg ttttggattt ttgggtctag gtaactctac aggcttagac ttgctagtca      6540
     taggtaccat ctttggttct gaggttttgg gtgaactaga actagtgttt ccaatgaaac      6600
     ctgcagactt gaaggttata ggcttttgag ctagttctat catcccatct gtgacaccta      6660
     atatctcatg ggtacctatc ctcaaagact catcaaaatc atagcctata ccttgattgt      6720
     ttatggacac tttggattag tctaggatca tgttcaactt tttctttcct tgagcaaacc      6780
     tctctaaaga ttgttgtagg taaaagttct ctctcttagc agactcaaga tcaactttca      6840
     gagaaatgca tgatgaacaa gaatcaatag atttgataga atcaatgaca gttttagcat      6900
     cttttagttc agtttccagg atagcacaat tagcacatga agaatgaata ggttccttag      6960
     tagcaaaaga ttctaacaaa tcattcttgg tcctaagcat ggcaacttgt tgtcttaatt      7020
     catcattgtc actagtgaga atgggacaat tttcacacct accaatccta tcatgaaatt      7080
     ttttttcttt tagttctttc aattccatct caagcaaacc catatcaact ttcatttcat      7140
     agcaagtaga gcaagcaaca ctagcactag aaggattccc agctcctaaa gcacatgatt      7200
     tcaacttatc cttgaggaga ttaatttcag agagatatga agcacaagta gaacaggtat      7260
     cctcctcagg aatcatggat cgaagcctag caatttctag cgccatacca tcattttcag      7320
     attttagttt ctcaatttta tacttagaag acctatactt gtcactaatt tcaatcatca      7380
     agtgtgccat tctttctttg cttagttcat catcaacaga gtcattatct gagcaaaaat      7440
     catcacaaag agaaccatcc aaggaaggga tatcatcaag acatacctca ggatgctccg      7500
     atgagtcatc cttatcctca agtgccatga gacacaggtt gatgaagtcc tcgttgttgg      7560
     cgagacagca catcccggag aagtccttgt cccccttttc ttgatcatcg tcgtcggagt      7620
     cgatgtcgct aagctgcacc tcctcaagag ccgccaagac cttatggatc gccttcttca      7680
     tcaaatcctt attccccttt cgcccttgtc cctcgggctt cttggtcgtc ttgtcactct      7740
     tcttcttcaa cttgggacaa ttcactctta tgtggttagg ctctccacac tcaaaacaca      7800
     caaatggttc attggttttt cctctttttc tatctctcac atttttgtaa gctcttgaga      7860
     attttctagc aaaaagagca agatcctctt caggaatctt ctctaattgc tcctcagtga      7920
     ctgagtgtaa agcggcaaga gagaagccac cacacacaaa agctgagtca ttagaagaag      7980
     tactaccaga gggatcagct accaaagcca tcgagtgttt gaggcctttc cgatggaaaa      8040
     tatccatctc atgggttttt agctttgagt aaagcttgtc catggtaagg tcactcagag      8100
     gtgcactctc tgtgatggaa gtaactttca tttcccaaac accataatca agacaattca      8160
     aaagatggcg agcattatca ttattagaaa attcttttcc aacagatctc aacttcgaaa      8220
     caatttctcc aaaacgcttg aaataagaat caatggactc tcctgggtgc atctcaaatc      8280
     tttgatattc tttatgaaat tgattctgac gaaccaattg aatatcattg tttcccttat      8340
     ggaaattgca cagagcagtc cacatgtcat gagcggactt gtggtgttga acacaattaa      8400
     attcaccaga agaaattcca ccaatgattg catttcttgc acgataatta aaatcaacct      8460
     gagccacatt tgcaggcgtg atgtcagcat catcgggcac agtgtaaggt gatttaacct      8520
     tattccacac attatgccct tgcgactgga ggtaggcctc cattcgtgcc ttccaaatga      8580
     caaaattgtg tccatcgaaa acaaatggtt tcgcagaata tttttcctcc atagcggcgt      8640
     tcgttgccac ggttaggtta caatgaactt aaccttgctc tcataccaat tgaaagacca      8700
     agaacagcta tagagggggg gtgaatatag caattcaaat cttgcccccg aaaatactca      8760
     tcaagccgga tttctcaaaa atccttacta gaaccgcggc tattagagaa gccggatcta      8820
     gaaaagaaga gagaaagaaa ttcccgaaac tagaagagaa agagaaaagg aatttcccaa      8880
     actagaagag aggtgaggag gagataacaa aactcatcat cgcaaagttc aaattgcaag      8940
     tagaatttaa attgcggaat ttaaatgaac aaggcaaaaa cgaaatcctt caaatcattt      9000
     cattcatagg tgatgcaaaa taaccgctca actaggggca aacatacacc ttcagaggaa      9060
     cattaacaca aaattaaaat ctctcggaca aacacactcc aaactaatcc taatacaaaa      9120
     gcctctcgag caaacacact ccaaactcac accgaaactc tctcaccgag catctcaaaa      9180
     ggattacaaa aggagcaacc tccacccttg catccatctc tctatttata gcctaagacc      9240
     cctaagacat tgtctcaaat atccctaggg cgaaacccta gccttgatgt aatcctggct      9300
     gtccattgtt ccttagatcc gaaggaagcc tcctggatag tcgccacgtt gttgatccga      9360
     gctctccacg ttgcgcgccc tcgtgcgatc cgcgtgattc cactccaagc caatcagcgt      9420
     gcaccgatcc gcgtcgtgct cctccaagcc aacgcatccg cgccacgcgt cccagagagc      9480
     gcgtgcctgc tcctctcacg cctgcgcacc accagtccga agccgccacg tcgccgttcc      9540
     tcccaccgag ccgcttctgc gcgcgctcgc gaaaaccatg ttcccgcgcg caccatgcga      9600
     aaaaccgcgt gggacccggt cgcttccttg acgaacagaa ggccgccacg cctccaggtg      9660
     ccgtacgatc tcccgcttcc gcgcgcgcat gcacacacct gtgcatttgc tgagccgagc      9720
     tgggccatcg tcatgtctag ggcttgctcg gcctagcctt caccatcttg agtcagcaac      9780
     gtgcttaggc cgggttggct cggccttcct gccaaccgaa ctgccagccc acaagcctag      9840
     tggccagctc ctgttggtct ccttgccatt caatcatggc agcacacgtg cacatgatac      9900
     atgctagcta cagtaagccg aattactgta gcagcaatgc actcggtctt catgtccttg      9960
     cacagtcctc ttctccttcc aattttcttc gcgaatccga tgcttgcaca cttgaccttg     10020
     tgaagcccgt tgcaaagacc tcctcacacg gtgtccgccc accgtgtgca accttgtgtc     10080
     caatcttgtc acccggcatc cttgatcgtt ctggacctca acttctccct gagtctagtc     10140
     ccgatccgcc gttgactaag attgactctg atcacctgca cacacatgag ccaaacaacc     10200
     gttgtcttgg cacagatatc gcaacctgac caatggtagt ctacgcacac acttcttgca     10260
     cttccggtac ttgtcaattt cccatcacaa aagaactata accacacatg gtttcaca       10318
//
ID   SZ-52       repbase; DNA   ; ORY   ; 13106 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice gypsy-type retrotransposon SZ-52, incomplete sequence.
XX
KW   LTR retrotransposon; GYPSY superfamily; SZ-50; SZ-52.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-13106
RA   Jiang N., Wessler R.S.;
RT   "SZ-52: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 106-106 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-52 is a gypsy-type retrotransposon. It has 746bp LTRs.
CC   Incomplete sequence. Related to SZ-50.
XX
SQ   Sequence 13106 BP; 4413 A; 2714 C; 2907 G; 3022 T; 50 other;
     tgttgtagca gggtgcaaac accttttcct ccaattcggt caaaacacta cgaggttttg        60
     caagacctaa gtatccagag gggaaaacac tcattctgag tggaaactac ctttccaaga       120
     ggaagaacac cttcccaaaa agaaaatacc ttcccagagg aagaacactt attcgaatag       180
     aaaatacctc ttcgggtgaa gaacacctta ttagggacat tacataatcg ctaatacaac       240
     tacacatatt ttggacaagt tacaatttca caggtgtttt ccaaggatga aagagaaggc       300
     aaagggggaa ttcgaattcc caggaggaag aagacggtcc aggacggaaa atgcattttt       360
     cccaagagtt cgaggaagag cactacccga acaagagaag atgccaaggg aagattccct       420
     ggggaccacc ttcaaccact ctcgccagct agcacctaaa agactaaaag acccctggag       480
     atgtactaga atgcccccac agacgctgat gtggcagggg cattagagta aacttacaaa       540
     gacccacagg ggtaaaaatg taatctcacg tgtacgacca ccggttataa aagccagtca       600
     aaaacctgta gcaggacaag acatcttgaa tacaaaagta atcctcaaaa gttgtgtttg       660
     ctgttcgagc tcgtttctaa ggataggcgg gaaaacactt ctttccggcc tatccccgat       720
     cttgttcgtg acctaaggtc acaacagtgg caccgtccgt ggggacggaa agtctccatt       780
     gaattgggct caaacagtaa atgcgacgtt ctcaacgaca gaagactgtg ccagtacgct       840
     atacaggagc ttttgcaagc gcgacagctg cactcgagag agagtgggaa aaggcagtgg       900
     aagaaagtga cttagcaaga gcaacggaaa cacttgataa gctgtgggca gagatggcca       960
     agacatccac agcagcagga ggtaatgaaa caactcaaga agaaagaatt gctggtgcgg      1020
     tggtggaaga aacagggaaa acacccatga gtgatgtaga gcttgctgaa ttggtccaag      1080
     cgcaaggggc tgtcatggtg agtaaaggac aatatgagga tcaagtgatc agtgtgcaat      1140
     accaggggct agggaaaagc aatcagatca ggcaaaagga gatgcccagg gggagaacaa      1200
     agaaggagaa agtatcaaag ccacccaagc tcaagatcta ccacgaaccc aagctcccag      1260
     tcaagtacaa aacccatctc aggctcaaat tcccattctt acccagaata cacctcaagc      1320
     tcaaatcacc attcctactc agaacctagc tcaaaccttg atccctagcc aaaaccaaat      1380
     tcctattcaa acgcacattt ctttccagcc gcatattcca attcaaactc aaaatcctaa      1440
     ccaagtacaa tatcctcaaa cacaattaca tcaaacccac ccagttcttc ccaatcaaat      1500
     ccaaatcccc caacctcata tcctacaaag taatatccca cgaacacaac tcccacaaaa      1560
     tgatacacca caaatacaag ttccacaaac ccaaatacca cagattcaaa catctttgcc      1620
     caacttcaca catacgcaat caacaaacac tcaagcagct caaaaccatc accaagtccc      1680
     ccaaggtttt tcccttttcc atatgcaaca accagagatg atgtttgaac aagggtacat      1740
     cccacaaatg gccaaccata tacaatatgc aggtcaaata ccgaaccaag ccttcaattc      1800
     cagcccacac aaccctattt tcaaccaacc aggggggcca aaacggccaa aggttggcat      1860
     gggcctaaaa cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1920
     nggttcgttt gtgcgaagaa acaccctttt ttggcctgcg gtcgactcct catagtaccc      1980
     ctgaagcagc aggtggagta tgataccacg aaagctaagc atactcccaa caatgctagt      2040
     aaggagtagc attatcatgg tacactacca ttccaccaat gacaatctat tcatgggaac      2100
     atatgagaga cacctttcga gcaggattca ttggggcgta tgaagaacca aaagaggcag      2160
     atgacttgta tgccatgaag cagcttccag gggaaacatt gagaagtttc atcgtgaagt      2220
     tttcaagggt aagatgtcag atcaggcatg tagatgatga aatgctcata gcggcagcaa      2280
     aaagggcatt gctacccggt cctcttcgtt ttgatcttgc tagaaataga ccaaagacag      2340
     caaaagactt gtttgaaaga atggaaagtt ttgcaagagg agaagaagat gagttgagag      2400
     tgcaagagga agaagccgtc ttgttgggaa aaaagcagtc aaagaacaag caaatttccc      2460
     aaggggaaga acaaaaggga gagaataccg gaaagccctg gaaaaagttc aagtatgact      2520
     ataaataaga tcagaaaaaa caggtaaatt ttatcggaga tggatccaac aatgaaagag      2580
     aaaaaggaaa acatcaatgg gacaacactc gcagagggag aaacaattgg gggcaatctg      2640
     gaaaaggtcg aggacaatgg tggaattcag gcagaggtag aggacgatgg tggaacaatg      2700
     aaagaggaaa aggaagagaa aataaaccta accaaaccaa attttgtcaa acacatggac      2760
     caggaggtca ttccacagaa gaatgttaca gtaagttctg tcatatacat ggtccgggag      2820
     ggccattcca cagaagaatg caggcaaatg actcacttgt tggaaaaaca cgtaaatcga      2880
     tatgagaaca agtatgaagg agctcgtgat caacgaggac aaaacgccat agaagcaccg      2940
     caagttatga agatagaggc aattgaagaa agtgcccaaa agagtgataa atgccataac      3000
     tgggggctct tcattgggag ttgagtcaaa aggcaaagaa aagcatatgt cagacaggta      3060
     aatcgtgtcg ggacaagcta tcagtcgaat ccaccagtat actcaaaaac ggtaatttcc      3120
     tttgggcctg aagatgcaga aggaatattt ttccctcatc aagatccttt agtggtctca      3180
     gtggaaatag cacaatgcga agtgcaaaga gtgttaatcg atggaggaag ttcagcggat      3240
     gtgctgtttt acgatgcttt caagaaaata caaataccag aagataggtt aacaaacgca      3300
     ggagtacctt tacaaggttt tggtggacaa caagtacatg caattggaaa aatatcttta      3360
     caagtggtct ttggaaaagg cactaatgtg agaaaagaag agatagtatt tgatgtggtc      3420
     gatatgccat atcagtacaa tgcaattctt ggaaggtcaa caatcaatat ttttgaggcc      3480
     ataatacacc acaactacat atgtatgaag ctcccaggac caaggggagt aataacggtc      3540
     cgaggagaac agcttgcagc aagaaagtat gagcttcaag gaacaccaag tgtgaaagga      3600
     gtacatgtgg ttgaccaaaa acagggagaa tacataaaaa tacaaaagcc aattcctgaa      3660
     gggaaaacaa agaaagtaca gttggatgaa catgaccctg gaaagttcat tctgatagga      3720
     gaaaacttgg aaaaacatat tgaggaagaa atcttaaagg tagtaaaaga aaacatggct      3780
     gtatttgcat ggtcaccaga tgagttgcag ggagttgata gaagtctaat tgagcacaac      3840
     ctagcgatta agtcaggata caagcccaaa aaacaaaaat tgagaagaat gtctacagat      3900
     agacaacaag ctgcaaaaat tgaacttgaa aagttgttga agacgaaagt cataagagaa      3960
     gtgatgcacc cagaatggct ggcaaatcca gtgttagtaa agaaggcaaa tggcaagtgg      4020
     agaatgtgca ttgactttac agacctcaac aaggcatgcc caaaagatga ttttcctttg      4080
     ccacggatag accagttggt agatgccaca gctagatgcg aactaatgag tttcttagac      4140
     gcatactctg gctatcatca agtttttatg gtgaaggagg atgaggaaaa gacatcattt      4200
     ataacaccat ttggaactta ttgttttatc agaatgccat ttggtttgaa gaatgcagga      4260
     gcgacttttg ccaggctcat aggaaaagtc ttggctaagc agttaggacg gaatgtcgag      4320
     gcatacgtag atgacattgt ggtaaagagt aaacaagcat ttacccatgg caaagatttg      4380
     caagaaacat ttgaaaacct gagaaaatgc tcagttaagc ttaatccaga aaagtgtgtt      4440
     tttggcgtta gagcaggaaa gttacttggt ttcttggtgt ccaaaagagg aatagaggca      4500
     aatcctgaca aaatcgcagc aatccatcaa atggagccgc caaaaaacac aagagaagtg      4560
     cagaggttga caggccgaat ggcatctttg agtagatttc tatctaaatc agcagaaaag      4620
     ggattaccct tcttcaagac tttgaggggg gcaaacacct tcgagtggac tgctgaatgc      4680
     caacaagctt tcgatgactt gaagaaatac ttgcatgaaa tgccaacatt agcaagtccg      4740
     ccaaaaggtc aacctcagtt aatgtatgtg gcagcaactc cagcgacagt tagcgcagtt      4800
     ttggtacaag aagaagaaaa taggcaagtg ccggtatact ttgtctcaga agcattacaa      4860
     ggaccaaaaa cacgatactc agaagtagaa aagttgattt atgcaattgt gatggcttca      4920
     agaaagttga ggcattattt tctgtcgcat gacataacaa taccatcggc atacccgata      4980
     ggagaagtgt taacaaacaa ggaagtcgcg gggagaatag caaaatgggc aatggaactc      5040
     ttaccttttg acctgaaata catatcaaga acagccataa agtcacaagt actagcagat      5100
     tttgtggcag aatggactcc caatgaggta gaacaacagg aagaagtcga aaaaccatgg      5160
     atagtattct ccgatggagc atgcaatgcc gccggagcat gagccgctgc agttgtgaaa      5220
     acaccaatga agcaaacgtt gaagtattct gttcaattag cttttccttc cacaaacaac      5280
     acagcagagt atgaaggcgt tttgttggct atgagaaagg caagagcgct aggggctcgg      5340
     cggttaatag tcaaaactga ctcaaagttg gtagcaggtc acttttccaa atcttttgaa      5400
     gcaaaggagg aaactatggc taaatatctg gaagaagcaa ggctgaatga gaaacatttc      5460
     ttgggaataa cggtaaaagc cataacaaag gaagaaaatg gagaagctga tgagctagct      5520
     aaggcagccg caacaggtca accattggaa aattcatttt tcgatataat cacccagcca      5580
     agttacgaaa agaaagaagt agcatgcata cagagagaag gagattggag agaaccgatc      5640
     ttgaaatacc ttgtcagtgc acaacttcca gaaaaggaag aagaagcaaa gagaatacaa      5700
     ctaacgtcca agaaatacaa agtggtagag ggacagttgt ataaaagtgg agttactgct      5760
     cctttgttaa agtgtgtaac aagggaagaa ggcatgaaga tggtggtaga aatacatgaa      5820
     ggcttgtgtg gagctcatca agcaccacgg tcagtggctt caaaagtcat aagacaagga      5880
     atctattggc caacaattat gaaagataca gagaaataca taaagacgtg caaagcatgt      5940
     cagaagttcg gtccaatgac aaaagcacca cccaaagaac tgcaaccaat tccgctggtt      6000
     tggccttttt acagatgggg aatagatata gtaggtcctc ttccaagagc gaagggagat      6060
     ctgcgctttg tcgttgttgc aattgaatac ttttcaagat ggattgaggc agaagcagtg      6120
     gcaagaataa cttctgcagc agtacaaaag tttgtttgga agaacataat atgtcgattt      6180
     ggagtcccaa aggaaatagt atgtgacaat ggaaagcaat tcgaatctgg aaaatttcaa      6240
     gacatgtgta aaggccttaa tttgcaaatc aactttgcct ctgtaggcca tcctcagaca      6300
     aatggagctg tggaaagggc aaatggtaaa atcatggaag ctatcaagaa gaggttagaa      6360
     ggatcagcaa aaggaaaatg gcctgaggac ttgctatcag tgctttgggc actaagaact      6420
     acggtagtaa ggtcgactgg catgacccct ttcagattgg tttatggcga tgaagcaatg      6480
     actccaagcg aagtaggggc acattctcca agaatgatat ttgaccaaaa agatgaagaa      6540
     ggaagagaga taactcttga aatgctagat gaaataaggg ttgaagcttt ggagaagatg      6600
     gcatcataca cagaaggaac aaagagctat tacaaccaaa aagtaaagac aaggccgatt      6660
     gaagaaggag atttagtctt gaagaaagtg ctcaatgagg tagctgttgg aaaactcgag      6720
     tcaaagtggg aaggaccatt catagtcaaa aagaagacag aaacgggagc attcaagtta      6780
     gcatatcttg atggtgagga gttaaagcat acttggaatg ctatttcttt aaagaaattt      6840
     tatgcctgaa aaaaaaagaa gagaaaaaaa aagaaaaaaa agagagagag aaagagaaaa      6900
     aggagaacac gggagctcga gtttgtagta tactcactca gatgtaaata cgaatgatat      6960
     ccaagttaat gtatataaac aggacgtagg gtttttatcc ataatggagg cccgaacctg      7020
     tataaaaaac atgcctctgt gtatgattgc aatagaactc cgcacgctcg gagtcaaata      7080
     cattcgacta acaaagtcga caaaatagaa ctccgcacgc tcggagtcaa atacattcga      7140
     ttaacaaagt cgacaaaata gaactccgca cgatcggagt caaatactct cgactaacaa      7200
     agtcgacaaa atagaactcc gcacgctcga agtcaaatac attcgactaa caaagtcgac      7260
     aaaatagaac tccgcacgct cggagtcaaa tacattcgac taacaaagtc gacaaaatag      7320
     aactccgcac gctcgaagtc aaatacattc gactaacaaa gtcgacaaaa tagaactccg      7380
     cacgctcgga gtcaaataca ttcgactaac aaagtcgaca aaatagaact ccgcacgctc      7440
     ggagtcaaat acattcgact agcaaagtcg acaaaataga actccgcacg ctcggagtca      7500
     aatacattcg actagcaaag tcgacaaaat agaactccgc acgctcggag tcaaatactc      7560
     tcgactaaca aagtcgacaa aatagaactc cgcacgctcg gagtcaaata cattcgacta      7620
     acaaagtcga caaaatagaa ctccgcacgc tcggagtcaa atactctcga ctaacaaagt      7680
     cgacaaaata gaactcctca cgctaggagt caaatacttt cgactagcaa atttcgacct      7740
     cgtcactcct tcgaaaggtg aggaggacgg cggttttcga actattttgc cttagtccaa      7800
     aaccagctca ggaatgctcg aactctattc tcgttcgagc tcaaaaagcg gaaaatcagc      7860
     gtgacgaggt aaaacacgtt tcgacctcgt cactccttcg aaaggtgagg aggacggcgg      7920
     ttttcgaact attttgcctt agtcctaaaa ccagctcagg aatgctcgaa ctctattctc      7980
     gttcgagctc aaaaaacgga aaatccgcgt gacgaggtaa aatacgtttc gacctcgtca      8040
     ctccttcgaa aggtgaggag gacggcggtt ttcgaactat tttgccttag tccaaaaaaa      8100
     ccaactaaag aatgctcgaa ctctattttc ccctcgctcg agctcaaaag gcggaaaatg      8160
     cacatgacga gataaagtac gtttcgattt cgtaacttct tccaaagata aggaggacgt      8220
     agtttaccta agggtgcttg cacaattgaa ataaagagca tttataaaga aaagaagaaa      8280
     ggaagggttt atttgatgtt aagaaggtat aacaagttac atacaaactc tacaaagaag      8340
     aaagaaaaga gtcgggataa acaatgttga gaggagaagg cattactgta tatgaaacta      8400
     ttgaataacg ccttttccat attctacgtt ggcgttcgga tggttggaag ttttgccaaa      8460
     aggctttact agcaagatta ttgttcgaac gccgttccct aaactcaagt acaaagtcac      8520
     gtaaactgtc atgtcgatgg cttcgttgcc atcggaaaaa cttaaaagca aatatacaag      8580
     tattatcata ataggcttcg agttcgtcat cggagatggc ggtcctggca gaagaaagct      8640
     ttgcagggtc tcgaaatgct aagtgcttca catttcgagt aggcaaagtg ttgttgcgtc      8700
     gaatcacaag ttttcgattc gagttaacct gcagcccccc aaagaaaggg aatttccatg      8760
     aaaagcatgc aataagagaa aagcattata gtcagctaca ctataaattt ttacaataaa      8820
     ggctctcaac cataacggtt ttgaagcagc aaaatagcat tgttttcgaa catacgaagc      8880
     atccttaact attcttttca cgaacgtcac acctgtgcgc tcgagctcgg agtactactg      8940
     tctttatctt gttggctcga actggccggc tgtgacttta atcttgaggc aagagatgct      9000
     cggagagacc tcagggtatc ttcatatcct ttcttcttcc agtaaagcac ttggaaagcc      9060
     tttacgatgg gttgagctgc atctcgaagc tgtgcaaatt tggcctcatc attaagcata      9120
     ccttgtatat cagctttaag ggtggtaaag tgttcacacc catttgaacg cagacaggcc      9180
     gaaaggctct ccacagcagt tttcgagcag cgagatgcaa agggagtaac gctatctttt      9240
     agcccaatgg aaaattcctc gaaccatttt cccacagctg ctaaagtatt ttcttccgat      9300
     agcaagctga tgtcagcccc tagacttcgc aacgcgattc gaacggtctc gcaacttttc      9360
     agaagaagtt ggcggcaact ttcgttctcg agctctaaag cagatatctt ctcgctttga      9420
     tttttgcagg cgagttcgag ttctttattc ttcttctcca agacctcaac ttgttccttc      9480
     atcttgtctt ctgattcagc gcgttgtcga gcgacgtctt gatactcgat gatttttcgc      9540
     tcgaatgctt tttcacgagc gagtaatttc ttcttttcct cagtaagcaa cttcttttct      9600
     tcggaaagct ctttcttttc gccgcttaac ttgcgcacga gatcggtggt gattttcttc      9660
     tcgtcggcca ttcgatcaag tttgcagcga agataatccc gatccttttc gagtttagcg      9720
     atgcgatcaa gtgatttctt ccatcgcgtg caaatagctc gaagagcttt ccgagcaaca      9780
     ccacgttgaa gacgagcaag gctcgcagtc tgcgcatcag aaaataggtt ttaagtcaaa      9840
     aaaaatacct gtgcagcaga tacatcaagt gctgcccaag aggacataag atcattttct      9900
     tccaaaaact ccttttcaag atcaggagta atcagaactt tctcgagttc atcaccaatc      9960
     gaactcaggg ggtggcgata ctttaggtca ttcaaacaca agtttgggcc atgatggcta     10020
     ctttccccga gttcattgaa attaggaaga cccataagcc aatgtccatc ttttgcacat     10080
     cgttcgctaa aaccaccaag aacgttttgt atcagctctg gggaaggggt tgcgatgaac     10140
     ggcagtgacg gaggtggagt ggggttcgaa ctacctgtaa ttcgaacacc tccatcagca     10200
     gcactcttcc ctgcttcgga cttttcggcc gcattgacgg gcgtttttgc cttttttgca     10260
     accaaatctc tatcagctcg aagagggttt gttgtctcaa cagtatcacc cacttgggtc     10320
     gaacaatctt catcgacaac cgtgttggct ggggcaacaa catacagtga agctacttct     10380
     tttgtcgaaa gggcaaaact agcatcagct cgaattgggg tgacatggat ggcagaaaga     10440
     tcaatacgga tatcatcttc atccaactct tcatcactgt caataacaag ctgcactcat     10500
     ttagaactcg gttcaggcgg aggactgctg gcagttttct tccttttcaa atcagctaaa     10560
     acagtaggag gaggaaccgt tttgctatca tcagattcag acgagtcgct cgagttgtcg     10620
     ctcgaactgt tactcgagtc gctatcatca ctcgagtcgt tctcttcttc atcagctcct     10680
     tcctcgcctt cttcttcttc agcattttct tcaccaattt cttcgtcaac atcttccaat     10740
     tcaacatcat catcatcatc atcagaagaa ggcttcacag atttcttttt ctttagtttg     10800
     gggacaattt caggatgaac ccggacaggg atatcggagc ctagagaggc gaagacccga     10860
     ttttgccttt tcccgttttg aagtgtcaaa aatttcaaat gctcatcctt ggtataaggg     10920
     ccaagaaatt tccgaactgg gcggaccata tcctctggaa tcacaactac aaggaagaag     10980
     ataacaaagg gagaaaataa atcttcttaa ctaagtcact ttttcaagaa aaacaaggtt     11040
     cgcaaaaaat caagttcgaa aaggaaactt acgatcagac gaaaccacaa atggaggaag     11100
     actggaaggg caatcttctg ggatttctcc aagagtgata tcccagccgc tcgaaagagg     11160
     cctaattttg agaagaacaa actcttccac caggtctcgg cagctaaagt tcgaaacaag     11220
     ttcttcgatt cgaggttgta tggcagtgaa ctccggcgac aaagagactg atggctcgga     11280
     gacagctttc ggtttcttcc cagagaacga aaaaggacaa tccttatcat tcagcaggct     11340
     aacagggatt tgatgataaa accacttcga ctgccacttg ttcccccatt ttgctcgaat     11400
     agcagacaca gctggccatg gacttccgcg cttcggatga ggagcaaagt ttacacaccc     11460
     aaacttcgag ttctgtttgg tgtagtgccg agtacaatgg aagtatgcaa agtcttcagc     11520
     ttggagagtc ccaccgcagc ttcgaaccat ctattcgaaa agcccaattc gaactaaagc     11580
     attcggagtc aattgaggaa actcaagttt gaacaatttc aggacctcga ccaaaaaagt     11640
     gctgcacggg aatttaaacc cggcgtagaa gaaatcctca aacacaagag tgtatcccag     11700
     cttgggagaa ggccttgatt ctcccactgg tcgaattaca acatttcgac cagatatcca     11760
     accaacatca acaagatcgt ttaagttttt gtccttaatc aaagaggcac caataccaca     11820
     agaagtattt tcgtggtttt ttgatttctt ggacttcgac ttttccgcag ttttcttgtt     11880
     tttccccatg ttgtgtagtg agaaaggaag aaatcaagca aagcaccaaa actcgaatgg     11940
     aagaaggaag aaagagattt agttcgagtc ttttgtgatt tcgagttgat ggcagaacaa     12000
     acgagtggtg gcgtaggtca cgtgatagcg acccctcctg gccttatata gcgcagggtg     12060
     gtaagggtcg cgggtttacg agcggacacg aaacccaaag cgacgcgacc ccttaagcgc     12120
     accaatgaaa taccagcacg tggcataaaa aaaacaacat ttaaaaaata ataaataaat     12180
     aaataaaaat aaaaaataat aagaataaaa ataaaaataa tgaatagtaa acgtggcata     12240
     tatgcatatt tgaatagtgt gtttcgaccg aataggagga cggcggtttt cccccttttt     12300
     tccataaact caagcacggt ttcggccgaa aatacacatc gcccttaccc gtgaggggct     12360
     tgttgtagca gggtgcaaac accttttcct ccaattcggt caaaacacta cgaggttttg     12420
     caagacctaa gtatccagag gggaaaacac tcattctgag tggaaactac cttttcaaga     12480
     ggaagaacac cttcccaaaa ggaaaatacc ttcctagagg aagaacactc attcgaatag     12540
     aaaatacctc tttgggtgaa gaacacctta ttagggacat tccataatcg ctaatacaac     12600
     tacacatatt ttggacaagt tacaatttca caggtgtttt ccaaggatga aagagaaggc     12660
     aaagggggaa ttcgaattcc caggaggaag aagacggtcc aggacggaaa atgcattttt     12720
     cccaagagtt cgaggaagag cactacccga acaagagaag atgccaaggg aagattccct     12780
     ggggaccacc ttcaaccact ctcgccagct agcacctaaa agactaaaag acccctggag     12840
     atgtactaga atgcccccac agacgctgat gtggcagggg cattagagta aacttacaaa     12900
     gacccacagg ggtaaaaatg taatctcacg tgtacgacca ccggtaataa aagccagtca     12960
     aaaacctgta gcaggacaag acatcttgaa tacaaaagta atcctcaaaa gttgtgtttg     13020
     ctgttcgagc tcgtttctaa ggataggcgg gaaaacactt ctttccggcc tatccccgat     13080
     cttgttcgtg acctaaggtc acaaca                                          13106
//
ID   CLOUD-7     repbase; DNA   ; ORY   ; 495 BP.
XX
AC   .
XX
DT   06-NOV-2002 (Rel. 7.1, Created)
DT   06-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   Rice Mutator-like non-autonomous DNA transposon CLOUD-7 - a
DE   consensus.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; CLOUD-4;
KW   CLOUD-7; Mutator-like; target site duplication.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-495
RA   Jiang N., Wessler R.S.;
RT   "CLOUD-4: a Mutator-like non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Repbase Reports 2(7), 11-11 (2002).
XX
RN   [2]
RP   1-495
RA   Jurka J., Drazkiewicz A.;
RT   "CLOUD-7: a Mutator-like non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Direct Submission to Repbase Update (29-MAR-2002).
XX
CC   [2] (Consensus)
XX
CC   9bp target site duplications.
XX
SQ   Sequence 495 BP; 138 A; 113 C; 106 G; 138 T; 0 other;
     agagtaaaat acaccagcgg tccttaaact tgtcaggagg tttcacttag gtccacgaac        60
     ttgcaaagcg cacatcgaga tccctaaact tggtttattg tatcatcccg gtccaaagcc       120
     gcgtttgacc gtggtcttgc ctacgtggca tgccacgtgg acgatgacat ggaatttttt       180
     tttttttttt tttctccctt cttccttctt ttttttcttt cttcttcttc ctctcccctc       240
     gtgccgcctc tcaccacgga ggaaaaaaag aaggaagaaa gagaaaaaag aaggaagaag       300
     ggagaaaaaa aaaaaaaaaa attccatgtc atcgtccacg tggcatgcca cgtaggcaag       360
     accacggtca aacgaggctt tggaccggga tgatacaata aaccaagttt agggatctcg       420
     atgtgcgttt tgcaagttcg tggacctaag tgaaacctcc tgacaagttt aaggaccgct       480
     agtgtatttt actct                                                        495
//
ID   OSTANR89    repbase; DNA   ; ORY   ; 404 BP.
XX
AC   X55429;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   Rice tandem repeat units R8-R9.
XX
KW   Tandem repetitive sequence; OSTANR89.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-404
RA   Ohtsubo H.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (02-NOV-1990)Ohtsubo H.,
RL   Institute of Applied Microbiology, University of Tokyo, 1-1-1,
RL   Yayoi, Bunkyo-Ku, Tokyo,.
XX
RN   [2]
RP   1-404
RA   Ohtsubo H., Umeda M., Ohtsubo E.;
RT   "Organization of DNA sequences highly repeated in tandem in rice
RT   genome.";
RL   Unpublished.
XX
RN   [3]
RP   1-404
RA   Ohtsubo H., Umeda M., Ohtsubo E.;
RT   "Organization of DNA sequences highly repeated in tandem in rice
RT   genome.";
RL   Jpn. J. Genet 66, 241-254 (1991).
XX
DR   GenBank; X55429; Positions       1     404.
XX
CC   repeat_unit 1..134
CC   note="R8"
CC   repeat_unit 135..404
CC   note="R9".
XX
SQ   Sequence 404 BP; 108 A; 75 C; 115 G; 106 T; 0 other;
     ccctagagat actaaatttg gagaggtgga cctccaaaga tttttctaga aatgacttac        60
     cataggccac gaagcagcgg ttgtttcggc gaaacgtcga atatctgagg gtccacaact       120
     ggttttcaac gaggtggtta gtataggaat ggcacatagg acgttagggt ggatagttta       180
     gatgatgtcg gtgtcaggcg cgtcgactaa ccgcgccgtt aaggtaggct ggcgggtgcg       240
     acaccgcgta atgtagatgg agaattctgt gcgaaattaa aacttagata acgttgcctt       300
     ccggtcatgg aattgagcta ggtttttttg atggctgcag aatcacggga ctcccactag       360
     agatactaca tttggagagg tggacctcca aagatttttc taga                        404
//
ID   SZ-22       repbase; DNA   ; ORY   ; 4404 BP.
XX
AC   .
XX
DT   16-AUG-2004 (Rel. 9.07, Created)
DT   16-AUG-2004 (Rel. 9.07, Last updated, Version 2)
XX
DE   Rice gypsy-type retrotransposon SZ-22.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; RIRE4; SZ-22.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4404
RA   Jiang N., Wessler R.S.;
RT   "SZ-22: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 79-79 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-22 is a gypsy-type retrotransposon. It has 759bp LTRs.
CC   Similar to RIRE4.
XX
SQ   Sequence 4404 BP; 1199 A; 880 C; 951 G; 1374 T; 0 other;
     tgatgtgacc atggctacta tagatacaac cgtcgttcac atcaagatca agccgtccaa        60
     gttctgcaat ccagttcggc tacctgctac agtgtggact tcaaacggcc gccaaatatg       120
     catgcaagct ccattttgga tccatgatta cttgatggaa agctctcaga gtcatctttc       180
     caatgatcta gcttcatcgc caaattccaa cccagtcggc caaaatcaca aaaaaaaggt       240
     gttgcgtcac ctataatggg cctatgggcc tgtaacttct ctgggacccc ggcccaagtg       300
     gggcccatgt ggggtgcgcc ccaaccaggt ggagcacgac cctagggtcc ccttaggtcg       360
     tcctcccacc tccttaaata gttaggtacc cctttagagt ttcttgggtt ttgatagatt       420
     aaagtttagc cagtgctact tgcttgcagc gcacgtgtcg gctagatcgt ccgtctgctt       480
     gctcttcgga accccaactt atcttgtgta ttcattccta tttgctattc agattgcttt       540
     tatcttgttc ttgcttgttt cttcgatttg cttgcaggaa taaggttgat ctgcaccggc       600
     aagatcaaca acccacggag aggtgtattg atcgctaagg cgcaacagaa cgtcttgtac       660
     ggttgtagtc ggatcgttaa cgtttctccc aaatcatagt tatcacaact caccgaaaga       720
     tcgggccaac aacagccttg agtgtcgaga ggaactcagg gttcatcagg tggtatcaga       780
     gctttcatta ctcggtgagt ttttatcttc ctataaccag aaaatagcca tacaaaaaaa       840
     atccgtatca tttacctagc catattgtgc cattgcattg tttttttcag tttttgcttt       900
     gttgaatttt gtgttgcatc gtctcgtcgt gttgctggtc ttagcgtcta gttcgtttag       960
     agtttcgagt tctggtcatg ttttatacca gagtcgtcgt cgcctctgtg tctctgttat      1020
     cgtcgggacc tacgaaaacg gaatcggctt gctgccacga ttctattttt gtagttttca      1080
     aaagtttcta tcggttggat ttggagttgt tgagttgcat cttgggtttg ctgattgccg      1140
     tgcttctgtt ttggccgtgc ctgtgtcgtg cacgagagga ggaaagtgaa ttaccaatct      1200
     gattttggaa gtagtcaagt ttgttttgga aagatatagt agattggatt ggttaaaaat      1260
     cagtttcatt tttatcccat acaccaaatc ctaattatcg gctaccatcc actccacctc      1320
     ctggccgact cccactcgtc cctttggccg agtccgactc cctccctccc tttcacggtt      1380
     ccaagttgtg tcaaacacct tggtgaattt ttgtttggta tcggttttga gatctgtttg      1440
     gaaaaacgga accggcataa attcagcatt ccatttttgt ataatttgaa ttttgggttt      1500
     agacttttac atttgagtcc ctgtaaattt tatatttacg tttgagtcct tgtaacctta      1560
     cattaaggtc cttgagtcag tttttgttaa aaaaaatcaa gaaaaaagtg agaaaaaaag      1620
     gcagaaaggt gcataaaaaa ataaaagaaa aaaaaactgc accaaaaaaa acagaaaagg      1680
     aaaggaaaga aaaaaaagaa aagaagaaag aagaaagaaa gaaaagagaa aatactgtta      1740
     tgtttgagct gaacttcata tatcagagtt gtgcatgagt tgttcctagt gctatcttgt      1800
     ggtatcgttt gtgtctaggc tcggtctcta gtacgttcta gcctaggacc agcacggtac      1860
     ttgactttga accattattc aactttacat tctctgattt gagcatttgc tatccctttg      1920
     ctacatattt aagcctaccc agagctccac agatatgatt gcagccgtac agcaagtgtt      1980
     tcccaaggca tcgatacatc caatctccat tggggtgctt ggttaagtcg gtgtacatca      2040
     ccattccgct tgctttggta agaacttgta agagcttcgt taaaagcttg agtgtgtgtg      2100
     atatttgagc tgccactacc tagtagttga taggagcgtg catatttttg tgtgtttctt      2160
     gtttgcttct aaccatggca ggattgcgta agggaatacg agaacatcga cttctacacc      2220
     ttcgacgaga tatgacgact tctccacgtg atgcatatga ggtacatgac tataattttg      2280
     aacaagttgc atctaagtta ccattctatg atggaaagta ttgattctgt tgcatacatt      2340
     gattgggagc tagcagtaga caatgaattt gatatatatg atttttctga tgctcaaatg      2400
     attaaggctg ctagtaataa gtttacctct tctgcattat tttggtggac ttatgttagt      2460
     aataaacctg aaacttagga tgaattgaaa accatgatga gaaaacgctt tgtgacttct      2520
     tattacaaat gtactctttg ggagaaatta gaacatctga aacaaggtga tagaactgtt      2580
     agggagtaca ttcatgaatt taaggtctgt atcatctaca gtggtctcaa agagtgcaat      2640
     gaaaatacaa tgcgtagatt tttcaatggg cttaattctg aaattcaggt tttgcttgat      2700
     aatgtgacat ataattatat tgggcaccta ttcatgcttg ctcgtagcat tgagagttag      2760
     atcatatcaa aggcgaggat gcatgaccaa tgtgatttat ctcctatttc tgaatcccca      2820
     atatacttat gtaatgatga tgtgcaaaca ttggaggagc aatcttttgt ctcccctgtt      2880
     actaacgttt tgcaggaaga tcagcacatc caagaaaagg agaatggtat acttgagaag      2940
     aaagaggatg aagcacctac gatgtctgaa gaaagttcgc aaggtaaatt aaatggtgct      3000
     gagagaaatg aaggtgagta ttctcaaggt gagctatact tgtccacttt tcatgctata      3060
     gtagagcaac cattagtgga atcaattgct gagttgcctt tgtcacaaat tgatttactt      3120
     gctgttcctt gtgataaaga agagttgtgc gataatgctt cacttatatc catgccacaa      3180
     ctagtgaatg aacatgctat tcctgttgtt aatactaact gcgctgattt taagcatgtt      3240
     gttcacattg ctaatagagt agaggaacgt gaattgacat attctttaaa tactttgggc      3300
     tatgttcagt ttgctgattt tcatgagctc gataatttga aggagaaatt atttgctaag      3360
     tctgatttgc catgtccaag taacactatt tttcatctct ttggtgaata taatgataga      3420
     ggaatatatt tggtgcatag agtttacatc tgttcagatt tagaacctcc tgtacttgtg      3480
     gataaaacat gcaagctaga gagaaatgtt attgctaaca aaattatctc gagtttgtct      3540
     tgttgtgatt ggaagaaaca ggttgtttta aatagactac acgaagagca ccatatggaa      3600
     aaaccgagga cggttttccg tgaagaaggg gaggatgatg tgaccatagc tactatagat      3660
     acaaccgtcg ttcacatcaa gatcaagccg tccaagttct gcaatccagt tcggccacct      3720
     gctacagtat ggacttcaaa cggccgccaa atatgcatgc gagctccatt ttgggtccat      3780
     gagtacttga tggaaagctc tcggagtcat ctttccaatg gatccagctt catcgccaaa      3840
     ttccatccta gtcggccgaa atcacaaaaa gaaggtgttg cgtcacctat aatggcctat      3900
     gggcttataa cttcgtctgg aaccccggcc caagtggggc ccatgtgggg tgcgccccaa      3960
     ccaggtggag cacgacccta gggtcccctt aggtcgtcct cccacctcct taaatagtta      4020
     ggtacccctt tagagtttct tgggttttga tagattaaag tttagccatt gctacttgct      4080
     tgcagcacgc gtgtcggcta gaccgtccgt ctgcttgttc ttcggaaccc caacttatct      4140
     tgtgtattca ttcctatttg taattcagat tgcttttatc ttgttcttgc ttgtttcttc      4200
     gatttgcttg caggaataag attgatctgc actggcaaga tcaacaaccc acggagaggc      4260
     gtatcgatcg ctaaggcgca acagaacgtc ttgtacggtt gtagtcggat cgtcaacatt      4320
     tctcccaaat cgtagttatc acaactcacc gaaagatcgg gccaacaaca gccttgagtg      4380
     ttgagaggaa ctcagggttc atca                                             4404
//
ID   COPIA2-I_OS repbase; DNA   ; ORY   ; 4509 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   23-AUG-2005 (Rel. 10.03, Last updated, Version 2)
XX
DE   O. sativa Copia LTR retrotransposon - internal consensus.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; COPIA2-I_OS;
KW   reverse transcriptase.
XX
OS   Oryza sativa (japonica cultivar-group)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
XX
RN   [1]
RP   1-4
RA   Gentles A., Jurka J.;
RT   "Rice Copia LTR retrotransposon.";
RL   Repbase Reports 5(3), 47-47 (2005).
XX
CC   [1] (Consensus)
XX
CC   962 bp LTR is COPIA2-LTR_OS. This copia-type retrotransposon
CC   appears to have been active recently in the rice genome, as there
CC   are numerous intact copies which are 99% or more similar to the
CC   consensus. The internal sequence contains a long uninterrupted
CC   ORF that has an integrase domain. The element is flanked in the
CC   genome by 5 bp TSDs.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..3942
FT                 /product="COPIA2-I_OS_1p"
FT                 /translation="MAGFADALRPDKFTGVHFKRWQIRVTLWLTAMKCFWV
FT                 STGKPEGVLTAEQQKQFEEATTLFVGCILSVLGDRLVEVYMHMTDAKELWD
FT                 ALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQAHEIQTMAKELELLKC
FT                 VLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVEEKAREK
FT                 DAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDERT
FT                 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVF
FT                 SVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGT
FT                 VDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKH
FT                 GYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGL
FT                 MSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSD
FT                 LCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVEN
FT                 QLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKN
FT                 RTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGR
FT                 KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK
FT                 SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTE
FT                 HTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPD
FT                 ADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEK
FT                 YKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVK
FT                 TAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFD
FT                 KTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS
FT                 FLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKP
FT                 SPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR
FT                 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE
FT                 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDL
FT                 LMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLR
FT                 NSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM"
XX
SQ   Sequence 4509 BP; 1251 A; 836 C; 1151 G; 1268 T; 3 other;
     atccaaaaac cttattatag gcactgtgat tttactatgg ctggttttgc cgatgcactg        60
     aggccggata aattcaccgg tgtgcatttt aagagatggc agatcagggt cactctgtgg       120
     ctgacagcta tgaaatgctt ctgggtgagt actggcaaac ctgaaggagt tcttactgct       180
     gaacagcaga agcaattcga ggaagccact actctctttg tgggatgcat tcttagcgtt       240
     cttggcgatc gtctggtcga ggtgtatatg catatgaccg acgctaagga gttgtgggat       300
     gcactgaata ctaaattcgg tgctactgat gctagcaatg atctgtatat catggagcag       360
     tttcatgact acaaaatggc tgacaaccgt tctgtagtcg aacaggctca tgagatacaa       420
     accatggcta aggaactcga actccttaag tgtgtcttac ccgacaaatt tgtggccggg       480
     tgcattattg caaaactacc tccatcttgg aggagtttcg gtactgcact caaacacaag       540
     agacaggaat actccgttga ggggttgatt gcgtctcttg atgttgagga gaaagctcgg       600
     gaaaaagatg ccgcgtctaa gggcgatggt gggcagtcca gtgccaatgt tgtgcacaag       660
     gcccagaaca agagcaaggg gaaatacaaa gctcagcaga ccaccaactt caagaagcag       720
     aagaagaaca acaacaatcc taatcaggat gagaggactt gctttgtgtg tggccaagtt       780
     ggtcatctgg ctaggaagtg tccacarcgc aaggggatga aggcacctgc agggcagact       840
     tctaagtctg ctaatgtgac cattggcaac actggagatg gaagcgggta tggtaattta       900
     cctactgttt tttcagttaa tcaatctact aattggtggg ttgatactgg ggccaatgta       960
     catgtttgtg ctgacatctc attgttttct tcttatcagg tcgcacgggg ttccaccgtc      1020
     ctaatgggga atgggtcaca tgcttctgtt catggtgttg gcacggtaga tctgaagttt      1080
     acttcgggaa agatcgtgca gctgaagaac gtgcagcatg tcccttctat cgacaggaat      1140
     cttgttagtg gctcccgtct gactagagac ggatttaagt tggtttttga gtctaataaa      1200
     gtagtcgtgt ctaaacatgg atattttatt ggtaaaggtt atgagtgcgg aggcctgttc      1260
     cgcttttccc tttctgattt ctgcaataag tctgtgaacc atatttgtgg cagtgtggat      1320
     gatgaggcta atgtttggca ttcacgttta tgtcatatta attttggctt gatgtctcgg      1380
     ctttccagca tgtgtttaat tcctaagttt tccattgtca aaggttctaa gtgccatagt      1440
     tgtgtgcaat cgaagcaacc tcgcaagcct cacaaggctg ccgaggagag aaacttggca      1500
     ccactagaac tcctacattc agatctttgt gaaatgaatg gggtgttgac gaagggtgga      1560
     aaacgatatt tcatgacatt gattgatgat gctactagat tttgctatgt gtacttgttg      1620
     aaaacgaaag acgaggctct agactatttt aaaatttata aggcagaagt tgaaaatcaa      1680
     cttgacagaa agataaaaag gcttaggtct gatcgtggtg gagagttttt ctcgaacgag      1740
     tttgacttat tctgtgagga acatggcatc atacatgaga ggacgcctcc ctattctccc      1800
     gagtctaatg ggattgctga aaggaagaac cgcacactga ctgacttggt gaatgccatg      1860
     ttggacaccg cgggactgcc taaggcatgg tggggggagg cattgttgac ctcaaatcat      1920
     gtgttaaaca gagttcctaa cagaaataag gacaaaacac catatgagat atggattggt      1980
     agaaaaccat cactttctta tttgcgcaca tgggggtgct tggcgaaagt caatgtacca      2040
     ataacgaaga agcgcaaact tggacctaag actgtggact gtgtttttct gggatatgct      2100
     catcatagca ttgcctatag atttttaata gttaaatccg aggtaccgga catgcatgtt      2160
     ggtacaatta tggagtctcg tgatgctacc ttctttgaga gctttttccc aatgaaggat      2220
     acacatagtg gttcgaacca accctctgaa ataattccca gttcaatcac accaccagaa      2280
     caaactgaac atacacatga acttgtctct gaggaggatg tcagtgaagc tcctcgaagg      2340
     agtaagagac aaaggacggc taagtctttt ggtgatgatt tcactgtgta cctcgtggat      2400
     gacactccta agtcaatttc agaagcatat gcatctcctg atgcagacta ctggaaggag      2460
     gctgtccgta gtgaaatgga ttccattatc gctaacggga cttgggaggt gacagagcga      2520
     ccctatgggt gtaaacctgt ggggtgcaag tgggtgttca agaagaagct taggcctgac      2580
     ggtactattg aaaagtacaa ggctcggctt gttgctaagg gctatactca gaaagaaggc      2640
     gaagatttct ttgacactta ctcacctgtt gctagattga ccacaattcg tgtgctactt      2700
     tccctagcag cctcacatgg tcttctcgtt catcaaatgg acgttaagac agcttttctt      2760
     aatggagagc tggatgagga gatctatatg gatcaacctg atgggtttgt agttgaaggt      2820
     caagaaggca aagtgtgcaa attgttgaag tctttgtatg gtctgaaaca agctcctaag      2880
     caatggcatg agaaatttga caaaacattg acatctgcag gctttgcagt caatgaggca      2940
     gataaatgtg tgtactatcg ccatggtggg ggtgagggag ttattttgtg cttgtatgtt      3000
     gacgacatac tgatatttgg gacaaacctt gaggtgataa atgaggttaa atcattcttg      3060
     tctcaaaatt ttgatatgaa agatttggga gtagctgatg ttatcttaaa cattaagcta      3120
     attagaggtg agaatgggat tacactcttg cagtcccatt atgtggagaa gatcttgaat      3180
     cgctttggct acattgatag taagccttct ccaacacctt atgatcctag cttgttgctt      3240
     cgcaagaaca agagaattgc taggaatcaa ctggaatact cccaaatcat tggctcgttg      3300
     atgtacctgg ctagtgcaac taggcctgat atctcctttg ctgtgagcaa gttgagccga      3360
     tttacctcta atccgggaga tgatcactgg cgtgcgcttg agcgagtaat gcgctatctg      3420
     aaaggtactg tggaattggg gcttcactat actgggtatc ctgcggtact ggagggttat      3480
     agtgattcta actggatctc tgatgtggat gagatcaaag ccactagtgg atatgttttc      3540
     acactgggtg gtggtgctgt ttcatggagg tcttgcaaac agacaatttt gacgaggtca      3600
     accatggaag cagagctaac ggcactggat actgctactg ttgaggcaga atggctgcgt      3660
     gatctattaa tggatctgcc tgttgttgaa aaaccggtgc cggctatcct tatgaactgt      3720
     gacaatcaaa cggtaattgt caaagtgaat agttctaagg ataatatgaa atcgtctaga      3780
     catgtgaaaa gacgattgaa gtctgtcagg aaattaagaa actccggagt tataacgttg      3840
     gattacatcc aaacagcgag aaacctggca gatcccttca cgaagggact atcacgaaat      3900
     gtgatagaca atgcatcgaa ggagatgggt ttgagaccca tgtgagttat actatggtgg      3960
     taacccagtc tatgtgatcg gagatcccgt gaattagatc ctgggaagaa caaaccatta      4020
     ataaactaga ggagagtacc aatatatata ccctctccaa gtgaagatgc atatactctc      4080
     gtgagctgca aggcaggttg gctatgcctt aatgagttct gttggcttta attagcraag      4140
     atgttgtcct gcagagcatt cttgaargaa ctcacctttg tgagcttgac tgttggtcgc      4200
     agtctatgaa gattttgggt gaatcttcta ggaagcttac taaagaccta ggagtatgac      4260
     ttatacgctc cacccgaggg gtagtctaca gacggtctag taccagataa gactttgagt      4320
     gaaacttgct tgcacaagac ttgcaattca aggcgtagtc cattgttcaa gttgtgagta      4380
     agtgtagctt ggagttctag gtggatgttc aaccttaatt ggtctccatc gaaccgctgg      4440
     tatataaaca gtacattgga aaaggcaaat ctcagtggga ttttgagatt tggtggggga      4500
     ttgttggaa                                                              4509
//
ID   RIRE7_I     repbase; DNA   ; ORY   ; 5896 BP.
XX
AC   AB033235;
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   10-JUL-2002 (Rel. 7.06, Last updated, Version 1)
XX
DE   RIRE7_I is an internal portion of the RIRE7 gypsy-like endogenous
DE   retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; RIRE7_I; endogenous retrovirus; gag-pol.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5896
RA   Ohtsubo H., Kumekawa N., Ohtsubo E.;
RT   "Direct Submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (05-OCT-1999). Hisako
RL   Ohtsubo, The University of Tokyo, Institute of Molecular and
RL   Cellular Biosciences,; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-0032,
RL   Japan (E-mail:hohtsubo@ims.u-tokyo.ac.jp, Tel:81-3-5841-7854,
RL   Fax:81-3-5841-8484).
XX
DR   GenBank; AB033235; Positions       1    5896.
XX
SQ   Sequence 5896 BP; 1680 A; 1179 C; 1337 G; 1700 T; 0 other;
     gtggtatcag agctcaagtt gctcggtgag agattttatc acttctttgt ttttacctac        60
     agcccaaaag aaaaaccact aaaataggtc agacccgaaa tcacagaaac atgttgagcc       120
     tttgctgttc tacttagtct ttgcttgctg agttttcgat tgcatcgatt ggttgagttg       180
     ctggttctag tagtttagtc ctttagagtt tcgagttctg ctcacgattt cgtcaccgca       240
     aacacttcca ccatcacttc atttatcttc atcctgctgc caccatcacc accatattca       300
     ccacgaagtc cacctccaac cccaccaaat ttcgtccacc acaaccagca gcaccctcat       360
     caccacatca gccaccccca aatgcattta ttgctgcctc caccaacagc caaccctttt       420
     gcaacttttt gaagtgaatc agcccttccc aagaaagcat ttaagtgctc tcacttttaa       480
     cttgttggct gaatcatgta actagccaac caacccatca ttacttcttg ttttgatttg       540
     ttggctgaag cttgtgaaat ttcgaaaatg tttgagaaaa ggttattttg ctaaggcttg       600
     ttttgacttg ttggctgaag ctttgagctt gctgtacaaa aaaaaagaaa gaaaacaaaa       660
     aaaaagaaag aaaaaaaatc agaagtgaag agaagaaaaa aaaaggaagg gaagagagga       720
     agttgttgtt gttgctgttt tgtttgtgtt attttcgtgc tattttgagt ggctacgctt       780
     gtgactaggc tcgcgtctct aaagggtttt gcctaggacc agcacaatac catcgttgaa       840
     tgattattca acttgctttg attaatgtgg ttctagctat accttgatat tacttgcagc       900
     cacctatagc tccacaaatt tttatctact atatcacagg attgtgcttg ttgtcggctc       960
     cagtactact aaccgttgtt gctgttcttg ctgtttgcca acgcctttta cataacaaag      1020
     taagaacatg taagaactcg tttgcacaag tttggtagaa gtggagatgg acaacaccta      1080
     gctccaatag ttgataggac atatttcttg tgaattgttt cttcccatta accatgacag      1140
     gaggatcggg ggagcaccct caacattcac cacgtacgag gggcatcata caacattttg      1200
     agcgccaggt gagggagcat gctgaaggcc ttgatgagga tgttagggtc gccaatgatc      1260
     gccttggtca attggaggct gctcaaatta acaccaactc caagctttcc tcattggaga      1320
     ggtcccttgt ggctgtgaac acttctcttg caggtatctt gaatacgttg gagagaattg      1380
     gccaagatgg tcatgatgga tcgtctaggc gcaaccacaa tggccatgat gctaatagca      1440
     gcatcgcagc aagggaagaa ctggagtacg ctgctgacac tgagcatgat gaggaggtac      1500
     ttggtcgtcc acaaagacaa cagcgccggc agcgccatgg catgggcgct ccaccacggc      1560
     gggaggtacg tgataatgat gattctttag gcaagatcaa gtttaccatt ccttgctttg      1620
     atggaaaata tgaccctgat gcatatctta cttgggagtt agccattgtt cagaaatttg      1680
     cttgccatga ttttcctgag aataaacgtg ttagggctgc tactagtgag ttcactgatt      1740
     ttgcatccat ttggtggagt gaatttgttc gttccaatcc aaataacact ccccaaacct      1800
     gggatgcaat gaaaagagtc atgcgagcta gatttgttcc ttcatatcat gcacgtgatt      1860
     tgctgcacaa attgcaacaa cttagacaag gaaacaaatc tgtagaggag tattatcaag      1920
     ctttgcaaat aggaatgctt cgttgtggat tggtagaaaa tgatgatgct ggtatggcta      1980
     gattcatggg tgggctaaac cgagaaattc aggacattct agcctacaaa gaatataatt      2040
     caattaatcg tttgtttcat cttgcttgta aagctgaaag ggaagtacag ggacgaagag      2100
     ctagcttcag gactaacatt tctgcaggtt gtgctagctc ttggacatct tccaacgctg      2160
     ctgcaccgtc aactcgagca gcagcaccat cgtgctcaag caacaagctg cgtccctcta      2220
     caacaaactc tacaccatgc ccgagtgaac caacaagagg ggttgctgct acaccttcca      2280
     agagctcatc atcagtagct tcatcaggaa ggacaagaga tattcagtgc ctacgctgca      2340
     agggctatgg tcacgtgcgc aaggactgcc caagcactcg tgtaatgatc gtgagagctg      2400
     atggtgggta ctacttcgat agtgatttag atgaagaaac ctatgctttg cttgcaacta      2460
     acaatgcagg ggaaggtgac gcgccccacc aagatgagga acacattagg gctgaagctg      2520
     cagagcacta tgagagcctc gtggtgcagc gagtgctaag cgcacaaatg gaaagggctg      2580
     aacagaatca gctccacacc ttgtttcaaa ccaagtgtgt gatcaaggaa cgctcttgcc      2640
     acgtgatcat agatggagga agctgcaata atttggctag tgctgaaatg gtggagaaac      2700
     ttgcattgag cacacagcca catccgcagc cctactatat tcaatggctt aatagcagcg      2760
     gcaaggtaaa ggtaacacga ttggtaagag tacattttgc cattggttct tatcatgatt      2820
     caatcaactg tgatgttgtg cctatgcaag catgttctat gttattaggt aggccatggc      2880
     agtttgataa agattcttta cactttggca aatccaatca atactccttt gtgcataatg      2940
     gaaaaaaact tgtgttacat cctatgtctc ctgaagttat tttaaaggat gaacttgcta      3000
     gagctagcaa acaaaaaaat caggagcata ctaggagtga gcatcttatt gcggctaatg      3060
     aacttgagaa gcataagaag aaacccacca actctgttca aaataataaa aatgagatta      3120
     agctgaaggg atcttgtttc attgcaacaa aatcagattt ggatgaagtt gacactgaca      3180
     ctgttttttg ctatgctttg gtttgcaaag aaaccttatt tccaattgag gatactccta      3240
     tttctttgcg tcctccggtc actaaccttt tgcaggagta tgctgatatt ttcccaaagg      3300
     aggttccacc ggggctgcca ccaattcgag ggattgagca ccaaattgac ctcattcctg      3360
     gggcctctct gccaaaccgt gcgccataca ggaccaaccc ggaggaaaca aaggagattc      3420
     agcgtcaagt gcaagagtta ctcgacaagg ggtatgtacg tgagtctctt agtccttgtt      3480
     ctgtccccgt gcttttagtt cctaagaaag atggctcttg gcgcatgtgt gtggattgta      3540
     gagcaattaa caacatcaca atcagatatc gtcatcctat ccctaggcta gatgatatgc      3600
     ttgacgaatt gagtggttca cttgtgttct ctaaaattga tttgcgtagt ggttaccacc      3660
     agattcgcat gaagttagga gatgaatgga aaacagcttt taaaactaaa ttcggcctat      3720
     atgagtggtt agtcatgccc tttggtctca ctaatgcacc cagtactttc atgagattaa      3780
     tgaatgaagt tttacgtgct ttcattggca gatttgtggt ggtatatttt gatgacattc      3840
     tcatatatag cagatcaata gaggatcatc atggtcattt gcgtgctgtt tttgatgctc      3900
     tacgagatgc acgtttattt ggtaaccttg agaagtgcac attttgcaca gatcgagtct      3960
     cttttcttgg ctatgttgtg actccgcagg gaattgaagt agatcaagcc aaggttgaag      4020
     ccatacatag ctggccggtt ccaacaacga tcacacaagt gagaagcttt ctaggacttg      4080
     ctgggttcta ccgccgcttt gtgaaggatt ttagcaccat tgcagcccca ttacatgagc      4140
     ttaccaagag aaatgtcaca ttcacttggg ctgcagcaca aaggaatgca ttcgacactt      4200
     tgaaagataa gttaacacac gctcctttac tccaacttcc tgatttcaac aaaacttttg      4260
     agcttgaatg tgatgctagt gggattggat tgggtggtgt gttgttacaa gaaggcaaac      4320
     ctgtagcata tttcagcgag aaattgagtg ggcctagttt gaattattct acttatgata      4380
     aggaattgtt tgctctagtg cgaacattgg aaacatggca gcattattta tggcccaaag      4440
     aatttgttat acactctgat catgaatctt tgaaacacat tcgaagtcaa gcaaaacata      4500
     accgtcggca tgctaaatgg gttgaattta ttgaatcttt tccatatgtc atcaaacata      4560
     agaaggggaa agaaaatgtc attgctgatg ctttgtctag acgttacgca atgctatccc      4620
     aacttgactt caaaattttt ggcttagaaa caataaaaga gcaatatgcg cacgatgatg      4680
     attttaaaga tgtgttgttg aattgcaagg agggaaggac ttggaacaaa ttcgttctca      4740
     ccaatgggtt tgtgtttaga gctaataagt tatgcattcc agctagctcc gtgcatatgc      4800
     tattattgca ggaagcgcat ggtggagggc tgatgggaca ctttggtgtg aagaagatgg      4860
     aggatatcct tgctgaccat ttcttttggc ctaagaagag gagagacgtg gagaggttcg      4920
     ttgctcgctg cacaacatgc caaaaagcta aatcacgcct taaccctcat ggtttgtata      4980
     tgcctttgcc tgttcctagt gtgccttggg aggatatttc tatggacttt gttttagggc      5040
     tgcctagaac aaagaagggg agggacagta tctttgttgt tgtagataga ttttctaaga      5100
     tggcgcattt cataccttgt cataagagtg atgatgctac acatgttgct gatttgttct      5160
     ttcgtgagat tgttcgcttg catggagtgc caaacaccat agtttctgat cgcgatacaa      5220
     aattccttag tcatttttgg agaaccttgt gggctaagtt ggggactaaa cttttatttt      5280
     ctactacatg tcacccccaa actgatggac aaactgaggt ggtgaataga acattatcta      5340
     caatgcttag ggctgttttg aaaaagaata ttaaaatgtg ggaagaatgt ttgcctcatg      5400
     ttgagtttgc ttataatcgt tcacaacatt ctactactaa gaagtgccct tttgagattg      5460
     tttatggcct tctaccccgt gctccaattg atcttttgcc cctcccaact tcagagagag      5520
     tgaactttga tgcaaaatat cgcgctgaat tgatgttaaa actgcatgag accactaagg      5580
     agaacataga gcgcatgaat attaagtata aacttgctgg gagcaaagga aagaaacatg      5640
     ttgcttttga acctggtgat ttggtttggt tgcatttgag aaaggatagg ttccctaatt      5700
     tgagaaaatc taagttgcta cctagagctg atggtccttt caaagtgcta caaaagatta      5760
     atgacaatgc atacaagctt gagctacctg ccgattttgg ggttagcccc acgtttaaca      5820
     ttgcagattt aaagccatat ttgggagaag aagatgagtt agagtcgagg acgactcaaa      5880
     tgcaagaagg ggagga                                                      5896
//
ID   RIRE3_I     repbase; DNA   ; ORY   ; 5752 BP.
XX
AC   AP008211;
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   30-AUG-2005 (Rel. 7.06, Last updated, Version 4)
XX
DE   Internal portion of the gypsy-type retrotransposon RIRE3.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   endogenous retrovirus; GYPSY superfamily; Met tRNA as PBS;
KW   RIRE3_I; RIRE3_LTR; gag; pol.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1..3151 1..5752
RA   Kumekawa N., Ohtsubo H., Horiuchi T., Ohtsubo E.;
RT   "Identification and characterization of novel retrotransposons of
RT   the gypsy type in rice.";
RL   Mol. Gen. Genet 260, 593-602 (1999).
XX
RN   [2]
RP   1-5752
RA   Jurka J.;
RT   "RIRE3: Annotation of a recently inserted copy from rice.";
RL   Direct Submission to Repbase Update (30-AUG-2005).
XX
DR   GenBank; AP008211; Positions 9459207 9464958.
XX
CC   The original sequence (ref. 1) was replaced by a very young
CC   copy of RIRE3 with identical LTRs.
XX
FH   Key           Location/Qualifiers
FT   CDS           186..992
FT                 /product="RIRE3_I_1p"
FT                 /translation="MAGSVTRRGLDMTGFVLELRGMCVVLGYPHGVDYQAR
FT                 PLPEQEGEDAEPHAGWEVTAVILSGSPERTSLAVTAGGDSFPAACQNAALL
FT                 AIGTLHQRYPDELQHSPYRYHPRRGGARDHATFRDASSEDDATVVHLARMV
FT                 EAYDAARIDFHQMVRRGMVENNMKILELRQENLQLKKDLDALEAQLHQLKI
FT                 AQGEGSRPKRRRVCRSQKITARKSTSRPELVRQSLAWTCFVETPRAEPAPV
FT                 VPQEGEASGVGSSEGALLLTFRPGPSQR"
FT   CDS           1133..5737
FT                 /product="RIRE3_I_2p"
FT                 /translation="MNQFNSSDKFKNNSSRGWLVLIVSSPSLFAGSVWGFQ
FT                 MVTTRRNVNTGEGNQPEGSNPNPQGNPPPPPPPDTNAILTQILAQQANMMN
FT                 AFLHHLQNPPQQNAPPPPPQHSKLAEFLRIRPPTFSSSNNPVDALDWLHAV
FT                 GKKLDTVQCSDEEKVVFAAHQLQGPASLWWDHFQATQPEGQPITWTRFTAA
FT                 FRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLARYAPEDVREDEE
FT                 KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLAN
FT                 FRNQQGANQRVRYTNPYPGGSSSQQQQQQPRPAPRPQFVVRVPQQQQQQNQ
FT                 QGTRAPRPPTPAVQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQ
FT                 APPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGA
FT                 SHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPF
FT                 PSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFAPP
FT                 TSVRSSELHQISLSEIPIVREFGDVFPEELPGMPPKREIEFRIDLAPGTTP
FT                 LHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKR
FT                 MCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIRE
FT                 EDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFI
FT                 DDILIYSQTEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS
FT                 AKGVAVDPETVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMT
FT                 QLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQG
FT                 LGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNR
FT                 CEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADAL
FT                 SRKSHCNTLNVRGIPPELNQQMEALNLSIVGRGFLAALEAKPTLLDQIREA
FT                 QKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPESRELKQLILQE
FT                 AHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQR
FT                 PAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIP
FT                 VKTTYGGNKLAELYFARIVSLHGIPKKIVSDRGSQFTSHFWKKLQEELGTR
FT                 LNFSTAYHPQTDGQTERLNQILEDLLRACVLDFGKTWDKSLPYAEFSYNNS
FT                 YQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRIIRDN
FT                 LKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRYV
FT                 GPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIE
FT                 VREDLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELK
FT                 AAHPDLFASSSESRGRDSV"
XX
SQ   Sequence 5752 BP; 1410 A; 1509 C; 1517 G; 1316 T; 0 other;
     agttggtatc agagcctccc ttgaccctag gacgagccgt agatcccaag ccttagcaat        60
     attttcaaaa ataaaaatcc tttgttattt gtgaaaaccc gctattctct cttgtcttgc       120
     tgcttcattt atcgtcaaaa tctggtcttt aaaaatgttg tttctctttt tgtttttgtt       180
     tgtagatggc cggcagcgtt acccgtcgtg gtttggacat gaccggcttc gtcttggagc       240
     tgcgaggcat gtgcgtggtc ttgggatatc cacatggagt ggattaccag gccaggccgc       300
     tcccggagca ggagggtgag gatgcagagc ctcacgctgg atgggaggtc actgcagtga       360
     tcctctccgg ctctcccgag cggacttcgc tggcagtcac cgcgggcgga gactccttcc       420
     ccgccgcttg ccagaacgcc gctctcctcg ccatcggcac tcttcaccag cgctacccgg       480
     acgagttgca gcactcgccc taccgctacc accctcgtcg cggaggagcc cgcgaccacg       540
     ccaccttccg agacgccagc tcggaggatg acgctaccgt cgtgcacctg gcacgcatgg       600
     tggaggcgta cgacgcggct cgtatcgact tccatcagat ggtgcgtcgt ggcatggtgg       660
     agaacaacat gaagatcctg gagctgcgtc aggagaatct gcagctcaag aaggacctcg       720
     atgcgttgga ggcgcagctg catcagctca agatcgccca gggagagggc agccgcccca       780
     agcgtcgccg cgtctgccgc agccagaaga tcaccgcccg caagagcacc tccaggcctg       840
     agcttgtccg tcagtccttg gcgtggactt gcttcgtcga gacccctcgt gccgagcctg       900
     cgcccgtggt tccccaggag ggggaagcct ccggcgttgg tagctcggag ggtgcgctgt       960
     tgctcacctt ccgtcctggc ccgtcgcagc ggtagacgag cagttagtag gcttgcgcgt      1020
     gtgtttttcc tcgtttgtct ttttgagttg tgtggggcat ggttacaccg gtgtgtggtg      1080
     caactatgtc ggagcctgtc ttattttgtt tgcctaagca acttgaactt taatgaacca      1140
     atttaatagc agtgataaat ttaagaataa tagtagtcgt gggtggttag ttttaatcgt      1200
     cagctctcct tctctgtttg ctggttctgt gtggggtttt cagatggtga cgaccaggag      1260
     aaatgttaac accggtgaag gcaaccaacc cgagggcagc aaccccaacc cccaaggcaa      1320
     cccacctcca ccaccaccac cagacaccaa cgccattctc acccaaatcc tcgcccaaca      1380
     agccaacatg atgaatgctt tcctccacca cctccaaaac ccgccacaac agaatgctcc      1440
     accaccacct ccccaacact ctaaactcgc cgagttcctc cgcatccgcc cacctacctt      1500
     ctctagctcc aacaaccctg tggatgcttt ggattggttg catgccgtgg ggaagaagtt      1560
     agacacggtg cagtgcagcg acgaagagaa agtcgtcttc gccgcccatc agctgcaggg      1620
     acccgcgtct ctctggtggg accacttcca agctacgcag cccgaggggc aaccgattac      1680
     ttggactcgc ttcaccgccg ctttccggag aacccatgtg cccgccggag tcgtggccct      1740
     caagaaaaga gaattccggg agctgaagca aggcaaccgc tccgtgatgg agtatttgca      1800
     tgagttcaac aatctagccc gttacgcccc agaggatgtg cgggaagatg aggagaagca      1860
     ggagaagttc ttggcaggaa tggaccctga gctgtctgtt cgtctagtct ctggagacta      1920
     tccggatttc caacgactgg tggacaagag catccgcttg gaggccaagc acaaggaact      1980
     ggaatcgcac aagcgccgcc tggcgaattt ccgcaatcaa cagggtgcta accagagggt      2040
     ccgctacacc aatccctacc cagggggatc ctcctcgcag cagcagcagc agcaacctcg      2100
     cccagcgccc cgacctcaat tcgtggtgcg cgtcccacag cagcaacagc agcagaatca      2160
     acaagggact cgtgcacccc gtcctcctac gccagcggtg cagcccgttc aaggccgcag      2220
     ggacgcttca ggtccgcagc ggctgtgctt caactgcttc gagcccgggc actttgcgga      2280
     taaatgcccg aagccaaggc gtcagcaagg ccaagcgcct ccccgctcca acaacggcgg      2340
     gaaggatgtc attcggggtc gtgtgaatca cgtgacggcc gaggacgtgc tgacaactcc      2400
     agacgtcatc gttggtacgt tcctcgttca ttccatccct gctacaattt tgttcgactc      2460
     tggagcttcc cactcgttta tatctgtgcc attcgtgggg aaaaatcagt tgggggtaga      2520
     aaggcttaga aaccctctgc tcatcaccac ccctggcggg gttatgacag caaagtatta      2580
     tagccctgcc gtccctatag aaattcaggg gattcctttt ccttcggacc tgattcttct      2640
     agacacaaag aacttggatg tgattcttgg gatgaattgg ttggcacaat tccaaggagt      2700
     agtggactgc gcgagacgca ctgttactct gtaccgaggg ccagaacaac cagttgtttt      2760
     ctttgcacct ccaacctctg tcagaagttc agaactgcat cagataagtc tgtcagaaat      2820
     ccccatagtc agagagttcg gagacgtgtt tccggaagaa ctacctggta tgccgcccaa      2880
     gcgagagatt gagttccgga tagatcttgc tccaggaacc actcctctgc acaagcgacc      2940
     ctaccgtatg gcagcaaatg aactggccga agtaaagaaa cagttggaag agttgaaaga      3000
     aaaggggtat atacgtccga gtacttcccc atggggtgct cctgtgattt ttgtagaaaa      3060
     gaaagacaag acgaagagga tgtgcgtcga ctacagagct ctcaatgagg tcaccatcaa      3120
     aaacaagtac cctcttcccc ggatcgatga tctgttcgat cagcttaaag gtgccactgt      3180
     attctccaag attgatcttc gttccggata tcaccaatta cgtattcgtg aagaagatat      3240
     tccgaagacc gcattcacta cgcgatatgg actgtatgaa ttcacggtga tgtcgttcgg      3300
     cttaaccaat gctcctgcct tcttcatgaa cttgatgaac aaagtgttca tggaatactt      3360
     ggataagttc gttgtggttt tcattgatga cattctgata tactcacaaa cagaggaaga      3420
     ccatcagcac catctccgtc tggtgttggg aaagttgcgg gaacatcaat tgtatgccaa      3480
     gcttagcaag tgtgagttct ggttgtccga agtcaaattc ttggggcacg tgatatctgc      3540
     taaaggagtt gctgtggacc ccgaaacagt gaccgccgtc accgaatgga agcaacccaa      3600
     gacagttact cagattcgca gtttcttggg tttggcagga tactatcgga gattcatcga      3660
     gaacttctcc aaaatcgctc gacccatgac acagttgttg aagaaagaag agaagtttgt      3720
     gtggagcccg caatgcgaga aggcgttcca aactctcaaa gaaaagctgg tttcctcgcc      3780
     cgtgttaatc ttgccggata ctcgcaagga tttcatggtg tactgtgatg cttcgcgcca      3840
     aggattgggg tgcgtgctca tgcaggacgg tcatgtggta gcctatgcct cacgccagct      3900
     acgtcctcat gaaggcaact accctacaca tgacttggag ttagcagcgg tggttcatgc      3960
     tctaaaaatc tggcggcact atctcattgg gaaccgctgt gaaatatata ctgatcataa      4020
     gagtttgaaa tacatcttca cccagtcgga tctgaatctt cggcaaagga gatggttaga      4080
     actcatcaag gattatgatg tgggaattca ctatcaccct ggtaaggcca atgtggttgc      4140
     cgacgctcta agtcgaaaga gccactgcaa cactctcaat gtccgaggca ttccacccga      4200
     gcttaatcaa cagatggaag ccctgaacct aagcatagtt ggtcgcggat ttttggccgc      4260
     gttggaagcc aagcccacct tgctcgatca aatccgcgag gctcagaaga atgatccgga      4320
     catgcatgga ctcctcaaga atatgaaaca gggtaaagcc gctggtttca cagaggatga      4380
     acacggaacc ttatggaacg gaaagcgggt atgcgttcca gaaagcagag agcttaaaca      4440
     gctgatactt caggaagctc atgaaagtcc ttattccatt cacccgggta gtacaaagat      4500
     gtacttagac ttgaaggaga aatactggtg ggttagcatg aagcgggaaa ttgcagagtt      4560
     tgtggctcta tgtgatgtgt gccagcgtgt caaggcagag caccagcgac cggctggact      4620
     tctccagcct ctccaagtgc cggaatggaa atgggatgaa attgggatgg atttcatcac      4680
     cggccttcca aaaacccaag gtggatatga ttctatatgg gtagtcgtgg atcgattaac      4740
     caaggtagct cgattcattc ctgtgaagac cacttatgga gggaacaaac tagcggagct      4800
     ctacttcgct aggatcgtga gtctccatgg tattcccaag aaaatcgtat ctgatagggg      4860
     aagccaattc acctctcact tttggaagaa gctccaagaa gagctgggta ctcgattgaa      4920
     ttttagcacc gcctatcacc cgcagacaga tggacagacc gagcgtctaa atcagatcct      4980
     agaagatctg ctccgcgcat gtgtactaga tttcgggaag acttgggata agagtctccc      5040
     ctatgccgag ttctcctaca ataacagcta tcaagccagc atacaaatgg caccttatga      5100
     agcgttgtac gggcgcaaat gccgaacacc gctattgtgg gaccaagttg gagaaagcca      5160
     agtgttcggg actgatatcc tgagagaagc tgaagctaaa gtcagaatca ttcgggataa      5220
     tctaaaggtg gcacagtctc ggcagaaaag ttatgcagat aaccgtcgcc gtgatctgga      5280
     attcgcagtg gatgattttg tgtaccttcg ggtcacgcca ttgcgaggtg tgcacaggtt      5340
     tcagacaaaa gggaagctcg cacctcggta tgtgggtccc ttccgtatca tcgctcgacg      5400
     tggagaagtt gcttaccagc tggagctgcc cgcctccttg ggtaacgtgc atgatgtgtt      5460
     ccatgtgtcg caactcaaga aatgtcttcg agtgccatcc gagcaggccg actcagagca      5520
     aattgaagtt cgcgaagact tgacctacgt ggagaggcca gtgaaaatcc tggacaccat      5580
     ggagcgcagg accaggaacc gggtaatccg tttttgcaag gtccagtgga gcaaccacgc      5640
     cgaagaagaa gctacttggg agcgcgaaga cgagctgaag gcagcccatc ccgatctctt      5700
     cgccagttct tccgaatctc ggggtcgaga ttccgtttaa ggggggtagg tt              5752
//
ID   SZ-39LTR    repbase; DNA   ; ORY   ; 948 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice long terminal repeat SZ-39LTR.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Long terminal repeat;
KW   SZ-39LTR; retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-948
RA   Jiang N., Wessler R.S.;
RT   "SZ-39LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2(7), 95-95 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 948 BP; 292 A; 209 C; 190 G; 257 T; 0 other;
     tgataagagt gttaggtccc gatctttcga taggtattga taaacagtcg atttgggtgg        60
     agtcggagtc gcgacataac tcgatccggc ttctgaacga atatgctact gagccccgca       120
     attgcagcac cacatctcct ctggttacca actatgctga aacccaattg acctcgccga       180
     aaaggctaat cccaagaata caagcaagaa caagatagat tgcaaccaaa ttgcatatga       240
     atgattaagc acacgaattt ggggttctac aaatcgatct agcggcgaaa ctattcttga       300
     cagattaatc taagcaaaac atgactctaa acgatgacgg ctactgacta aatatgatta       360
     gggacattct agggttaccc taaagcgcac acccccttgg gctaagccca cgacacaatt       420
     acaaggccca aaacacaaat cagattcgga ctgtatgagg tacatggctt gttttgcaga       480
     ttcccggcag ctcggtagga attttgacat gggaccaaaa ccatctgaaa gtagactcca       540
     taagcttttc aataagtact catgggcccc gaaattcctt ctagatcagc agctagttcc       600
     gtttgaagtt gacgctgtca ggaggcccga atccgaatcc aaaatatgta gaattttatc       660
     tcttgtcttc tatggaccaa aagtgacgcg gtgaggtaga agtaaacttg gagtaggtct       720
     tagtttggtc cccaatcaac ttctttgatc atccatgcat tccttacgct cggtgtcttt       780
     tctttcgccc aagcaagtac ctctgcaaat gaaaacacat gaaacttatt gtgtagcatt       840
     atttgttcaa atatataaca agtaaatcaa atatagaaca tatgcacctt tagttgatta       900
     atacataagg tagttatggt tatatccgaa ctagttgtgt cctcctca                    948
//
ID   OSTE24      repbase; DNA   ; ORY   ; 680 BP.
XX
AC   .
XX
DT   08-NOV-2002 (Rel. 7.1, Created)
DT   11-NOV-2002 (Rel. 7.1, Last updated, Version 2)
XX
DE   Rice putative non-autonomous DNA transposon OSTE24 - a consensus.
XX
KW   DNA transposon; Interspersed Repeat; OSTE24; TNR3;
KW   non-autonomous.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-680
RA   Jurka J., Drazkiewicz A.;
RT   "OSTE24: a putative non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Repbase Reports 2(10), 19-19 (2002).
XX
RN   [2]
RP   1-680
RA   Jurka J., Drazkiewicz A.;
RT   "OSTE24: a putative non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Direct Submission to Repbase Update (05-NOV-2002).
XX
CC   [2] (Consensus)
XX
CC   Imperfect palindromic sequence.
CC   OSTE24 is homologous to TNR3 over part of its internal sequence.
XX
SQ   Sequence 680 BP; 240 A; 98 C; 95 G; 247 T; 0 other;
     gaattttttt tatttttaca tttttttatt aaaatattta caaaaataat tttttgtttc        60
     gaaaatttac aaatctagtc gcctccgccc tctgggaggg cgttttttaa aaatcgccct       120
     tccaaagggc gaagggacct aaatgcaaat tttttatttg tgttcaaacc ctttccaccg       180
     gttttaattg cttaaaaact aataatgctt atttgacact ctaaatgatt ttaaatgaaa       240
     aagttataaa ctacaaagtt gtagatctca tcaagatcta caacttttat ataaagttta       300
     tctccatcca atgtcgtttg aaatgtagat ctgagatttt ttaaaatagg ttttagattt       360
     tgtaacgaat atttggacat ctaaatgatc taaaatgaaa aagttatcaa cacaaaagtt       420
     gtagatctca tcgagctcta caattttgat ataaagtttt ttttcatctg actttatatg       480
     atataatttt aaattgtaaa atcatagagc taacaagcta tgctggaaaa tttgcattta       540
     ggtcccttgc gccctctgga agggcgattt ttaaaaaacg ccctcccaaa gggcggaggc       600
     gactagattt gtaaattttc gaaacaaaaa attatttttg taaatatttt aataaaaaaa       660
     tgtataaata aaaaaaattc                                                   680
//
ID   RBTVL_LTR   repbase; DNA   ; ORY   ; 979 BP.
XX
AC   AE017121;
XX
DT   04-AUG-2005 (Rel. 10.07, Created)
DT   24-AUG-2005 (Rel. 10.07, Last updated, Version 2)
XX
DE   Rice tungro bacilliform endogenous badnavirus like repeat (long
DE   terminal repeat).
XX
KW   LTR Retrotransposon; Interspersed Repeat; caulimoviriadae;
KW   endogenous badnavirus; LTR; reverse transcriptase; RBTVL_LTR.
XX
OS   Oryza sativa (japonica cultivar-group)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
XX
RN   [1]
RP   1-979
RA   Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y., Sano Y.;
RT   "Reconstruction of putative DNA virus from endogenous rice tungro
RT   bacilliform virus-like sequences in the rice genome: implications
RT   for integration and evolution.";
RL   BMC Genomics 5(1), 80-80 (2004).
XX
RN   [2]
RP   1-979
RA   Jurka J.;
RT   "A recent copy of LTR-retrotransposon related to Rice tungro
RT   bacilliform virus.";
RL   Direct Submission to Repbase Update (04-AUG-2005).
XX
DR   Genbank; AE017121; Positions  203379  204357.
XX
CC   LTRs are 99% identical. Present in multiple copies in the rice
CC   genome.
XX
SQ   Sequence 979 BP; 312 A; 190 C; 226 G; 251 T; 0 other;
     tgggcgtgga agaagaaaaa aaacgaagat ttcagaagac tactcaagga ggaatccaga        60
     agaaggaatc cagaaggaca ccctataagc ataaaggaac aatatagggt gcggtgaatg       120
     acatatcact gtgaagagta aaactttcgg tgaaaaggcc tcgactttag ccagctcccg       180
     tgaagataca gtagcgaaga gataagcagg aggcacaggc gacgccatcc ctggcctcta       240
     taaaaggaga cgttggcctt cactccggag acacacaaca acaacgaaga caccattcag       300
     agcaaagctt ccaagcgcgc tctcaccctc cattccaccg ttcttagtag tagtgacttt       360
     agcctacctt gcatagtata ttgaagcaag gagttgtgta ataacgctgt gtaaggtaag       420
     aacagcttgc ttgtacctac cttcgggttt cccgaaaggg aaaaccgtat gtaagcttat       480
     ctgtttaata tgaagtaatt ttccttaagt attcctgcac gtttgttcta gacaagtgtt       540
     tatgctaagg accctatagg agaaacctct tcggtttgtt ctcgttttta gcctgcatct       600
     tgcataggcg tctggagaat cggtatccgt agagaagtgt tccctttggg tggaactgcc       660
     tggggagacg ataaactctt agctagaaca agtgtgactt ggaatatctt gttaagttgc       720
     ttctaaaaag atagataggt gaggcatacg gtgagtaccg agtaggactt tacatcatcc       780
     gaagcaagct tctaaggctg tctaaatagg attcgccacc ctgcaaagat cctaaagtta       840
     aaatatctct cgaagtgaac agtaatttaa acagtaaact gaatagtgtt tttgaatagt       900
     aatcagccga ataaacagta aactgaatag tattcagccg aataaatagt gttttgaaca       960
     gtgtatattg tctgaagca                                                    979
//
ID   SZ-61LTR    repbase; DNA   ; ORY   ; 2410 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   23-MAY-2005 (Rel. 7.07, Last updated, Version 2)
XX
DE   Rice long terminal repeat SZ-61LTR.
XX
KW   Long terminal repeat; RIRE9LTR; SZ-10; SZ-61LTR; retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-2410
RA   Jiang N., Wessler R.S.;
RT   "SZ-61LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2(7), 116-116 (2002).
XX
CC   [1] (Consensus)
XX
CC   Related to SZ-10 and RIRE9LTR.
XX
SQ   Sequence 2410 BP; 645 A; 428 C; 561 G; 776 T; 0 other;
     tgaaagttca agtgacattg atttggtttt gatgattaat aacaaatcca attatgtgag        60
     actaatgttt ttataagcat ttctttgcct attctcatgt ggatatgaaa ttggagtgtt       120
     ggtggaccta aatcacaagg atgaaatgca tggagatcaa gctatatgta tcactctttc       180
     tcttcatgta catattgata tgttcgtata taatatttcc acgtgattgg catatgcatg       240
     tgagactaat gttttgtttg agtattatct cttatttagt ctatttacat tgagaacgtg       300
     gagatgatga aggtatattt ttattttaat atctatattt gagaaatgcc ttctattctt       360
     gtataggata agctctcaat gtttaatatc ttgttatgca tgctcttgct tcacacaaat       420
     attttgtatg catacattta gggggagcaa atcctatact ttagttatgc atgtaatcaa       480
     tccaagttat tcaccttcat ttaattggga tctttacatt tgaacatata tttgagtata       540
     tgacacttgt ggtgttgatt aatactcatc atttattcat atccttttat acatgcgatc       600
     ggttggtcaa catgtggagg ttgacaaccg gatcattggg actaataatt ttattgagtt       660
     gaatgaaaga aataggtccc aaggattaca aaggtgttga tgctcaagtg atatcattac       720
     acctaacaat accaagaatg acaaagtgaa gatattgaag atgtgtgata cgaagtggct       780
     attatggcaa gatggtgaag ggcaagcgat gctcggtcgc gatggaccat gcggcggtga       840
     agggcaagca aggggcttgg cgccgaagga ccaaatccgg tggtggtaaa gggcgagtga       900
     cggctttgtc atgatggacc gtgagagacc atttgaagct acaagtaacc gcatcaatca       960
     tttgaagaat atatggtgaa acggtatcgg cattggcgtc cctctagaca atgaaagaag      1020
     gatgaaaaaa aggcattcct aatggtataa ttatcttctt atttacattt gagtttagga      1080
     atgccgtact attaagaggg atgcaacgtc gaggtgtttg tgtatgtctc ggtgctcaaa      1140
     gtgacctatc atagtgctac cttgagagaa gcccaagctt taacctatcc tttgagtggt      1200
     tttagacctt gtttttggtt gagttgggta gtcctctgag tgagctttct atagagtcca      1260
     agttcatcga aaacggactc ccgagtgaaa agttatagtc gttttactct gtgcttttcg      1320
     gaaagtccga aaaattaccg gaaactccga aaattttcgg acattccgaa agtggctgcg      1380
     aatatgagat ttgcttctgt aagttttcgg acttgtccga aaatgctttt cggaaactcc      1440
     aaaaattaca gtcttggcct ccaacggcta gtttttgagg ggctcgggta tataaactcc      1500
     tccacccctc ttttgagggg ctgctgctct tggggagtat tagacacatc caaagccaaa      1560
     tagccatccc catttcccta cctttgtggt gcctctttgt gagggggatt tgagaagggg      1620
     agagagttgg attgagagag tgaggagttg agagctagtg agcttcactc catcctttgt      1680
     gtgcctcttt gtgagaggga tttgagaagg ggaaagagtt ggattgagtg attgagaagt      1740
     tgagagctag tgagcttcac tccatacttt gagcactcga gttcatagca agcaaatctt      1800
     cgattgtgtt tgttactctt ggagactaag gtctcctaga cggctaggcg ttgccggtga      1860
     gcacccaagg ttgtggtgtg ccatggaaag tttgtgaagg cttcgatttc gcctccgcaa      1920
     gggaagaaat caatagtgaa accgaggagt gcatttgtgc accctcgtga ggaaagggtt      1980
     gaaataggcc tggcccttgt ggctcctcaa cggagacgta ggatccgtgg atccgaactt      2040
     cgggaaacaa atcacgcatc tcccctcttg gtttgcccgt tcttgcattc tctcatattg      2100
     tgcttgagct tgtttttacc tgatctactt gcatgcttaa ttgatttagt aggtgacctt      2160
     atatcttgct tagatacctt atttgtcacc ttttgattca tatacatttt gtttgtttga      2220
     gctacaagtt catagctagt gtttattccg ttatccgccg aacttttcga ttgagaccgg      2280
     aacttccaat cccataccgg aagtttcgat ttgaatcaaa agttatcatc actctgatat      2340
     gctatgaagt tgtgataatt tttaggaacg cctattcacc caacctctag gcgacatcaa      2400
     ggtcctttca                                                             2410
//
ID   SZ-66LTR    repbase; DNA   ; ORY   ; 1223 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.1, Created)
DT   11-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   Rice putative long terminal repeat SZ-66LTR - a consensus.
XX
KW   Long terminal repeat; SZ-66LTR; retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1223
RA   Jurka J., Drazkiewicz A.;
RT   "SZ-66LTR: a putative LTR from Oryza sativa.";
RL   Repbase Reports 2(10), 28-28 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1223 BP; 351 A; 275 C; 253 G; 344 T; 0 other;
     tgttggtatt tcttacggtc acagattaaa atccgcaagc gcacggaata taccgatgta        60
     gcacttcacc tacggagtat tccaaagggt atcgatttcc acagggaacg tgtgtgtggt       120
     cagctcttct tcaggttcat ccaaggacac aaagctaaag ataggcaaag gatagagagg       180
     atttactagt gagaaacagt gtctacggaa agcttaagtt taatcctaac gcgatacttc       240
     aggcactggc cagcccgctg ctcccagata tcgctctact acgtacccgg acagggagga       300
     cttaagtgtt cttgagggct gtcaccacct ctacacccac ctcaaaccta ctgtgggata       360
     cgcagcaatc aactggaaat taattaccta gacaccacgt ctacgcaatt aataacttac       420
     tttagtgttt ataacacact aaagcaatca ctatatttta atggattata gtgaacaatg       480
     atcccgtatg ctaattagga actaaccaag aaataattct cactaagtaa atcttaatta       540
     ctcaagaaag atatttctat taaagtcaga gtaattaaac agagtaaaag aaataaggag       600
     aggattaccg acaactccgg aattcctccg acttcttcta ctctactctc tccctattct       660
     agtatacaat aaagtacaat agagcctctt ataattcagc tcaagcttgg agtgtgtgtg       720
     tgaagtgaga gaggtgaggt ctttttatag ggtaaggtat gacggttgga gaatgcgaaa       780
     tgtccgaagt accctccaac cgccatcagg aagtcatctg ggacgtccat gccaaacccc       840
     gggatgaacg gctacgatcg gggttcggcc gaccaaccag gggttcggcc gaaccctggg       900
     ctggcccccc tggcccggtc ttcggcctgg acactcccct tttggtcccc ctttatccat       960
     ttctatgagt tttgggccca ttttctggtg ttttaatgag tttttgggcc caaaactcct      1020
     tgtatggata cggaagtatg attctccttc actttagtgt atatttcctc ccaactttgg      1080
     tggtttatca cctgcataca aatatacacc aacacttgtg gaaattgtta gaaataaacc      1140
     ctaccactat gttggatgtt ttattattta tgattttatg caggtattga cggtataaat      1200
     ttggcattta acagccgtca aca                                              1223
//
ID   SZ-34LTR    repbase; DNA   ; ORY   ; 4039 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice long terminal repeat SZ-34LTR.
XX
KW   Long terminal repeat; retrotransposon; SZ-34LTR.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4039
RA   Jiang N., Wessler R.S.;
RT   "SZ-34LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2(7), 91-91 (2002).
XX
CC   [1] (Consensus)
XX
CC   Identical sequence SZ-43LTR is published in
CC   Repbase Reports 2:(7) p. 100 (2002).
XX
SQ   Sequence 4039 BP; 1097 A; 1029 C; 644 G; 1269 T; 0 other;
     tgtaacattc tgaaaatgtg tcattttcta atcttgcatc atgctgattc ttatgttctt        60
     aataaccttc taaacctagg aaaatataat tagagggacc tcctaaaact aactcgcata       120
     aaacctctct ggtatttaat cccttttgtg tttttcattt aaaaacatat ttggtatttc       180
     ttgttgaaat tctattttca aatattaaac cttctttcga ctaaaactct tttattcaaa       240
     tttagtttaa aaaccatttt tattattatg aattatggtc caagaaatcc tccaattttt       300
     gtccttgaac ctagaccaaa gtaattccaa tctcattgga attaattgtt agcccatcct       360
     ttgatcttaa acccatcctt tgattctcga tccaaatatc caaattcctc cttttgatct       420
     agccaccaat ttaatttatg tggcttgatt tcctcttcgg cacaagaatt gtattattgc       480
     aatattgtga ataattgctc ttgtgctaag aaaattccaa tttatattct tcactcaact       540
     tcccctttta gccacaaata tacataacac caattttaga gttcaaatcc tatttattgc       600
     cttcaactaa ttcccttcta tattcccaaa aatattttga ggaatattat taatttccat       660
     tcctatttga gtgcttccaa ataaattccc tcaaactcca cctctaaata ttgcactcaa       720
     ataaattagg aaatctcttt tgtgaattct ttccaaattc aaattctttg caaaacctag       780
     ttatccaaat caagtattca aattaggctt ctttcttttt gtcatcgggc cgaaactcca       840
     ttctttcttc ctttttggcc caatcccttt tcttttatct tctattttcc tcctccttct       900
     tgagctgccg gcccagctaa gccgagccgg cccaaaccag cccacacccc aaccgagccg       960
     ccccctcctc ctgtgcacgg ctcacgccgc cgccaactcc tcttccttcg ccgctaagga      1020
     aacgaagccg gccgccgtag ttcgaatctt cacgccatcg tcgcccgtgc acttctcgat      1080
     ctcctccaca accgcctttc accaccgcct ctctccccta taaatagccg gccatccctc      1140
     cccttctcta catacaatca gagctccatc tctctctctt tctctcccat gtccggccat      1200
     ggccgccacc acccgatctc cctcaccgga gcttcgcaag ccaaaccatc gcgccatcga      1260
     gttcgcctcg acgaggtgat tccatttttc ctgtttcccc cttctccccc accccatagc      1320
     aaccaccacc gccacctctc tttgccgccg aagataagct cttctactcg ccgttccggc      1380
     catctccctc actctctccg ccagccaccg cccaccccag gtgcgtcgtt ctcgggaaca      1440
     tgtgtggccg ccgacgtcgc cgcctttcgt ccaccggaga gccggcgccc actctctccc      1500
     tctcctgtgt agccggcaag aaaaagaaga agagaggaag aagatgacgg gagaaagaag      1560
     aaggagaaga aaaagaaaaa gaaagactga caggtgggcc cctgcacagt gacttttctc      1620
     attttctaga tttaattcaa atcctattct ttagaagcac atatctccta aaccgtagat      1680
     ccgattctag tgaaacttgg acctaaattc atctaaattc aactcttcat tttgatatca      1740
     aatttgctat tttaagattt tatttgaatt tccttaattt attcaaatgc catttgaata      1800
     aatatttgat ttaatcttat aattgaattt acaatttaaa cttatatttg cttttcaaat      1860
     attttctttt atttccaaaa tgcccgttag ccactaaaaa gccgccggtt ggaactttac      1920
     gccttccatg gggacgtttg cgcggtctac ggacctcaac gtcggaccgt tggttgtaaa      1980
     gcccggcaaa aaccaaacct aaggtcgaag tgctgctcct gccaccccac gccttgatgc      2040
     gtacagcggt cggagcttca ctatcccctc gacctccatt gcacgccgca cagttagctc      2100
     ttgagctctg tgtgatccta gccgctctgc cgccactcac ggttgtcgga gtaacacttc      2160
     cgccccacta aacctgcacc cacctcctat tcttctagcc gatatgttgt ctatcgacac      2220
     ggctagaaat gataccaaac ctagtcgtca tgctgtccaa ctctagcgac aactagcaaa      2280
     cacccaaaac cctagccgat atttatccta cctcgatatc ggcctaaaca actaaacctt      2340
     agccactatt ctatcaaagc caaccttaac ccatattagc cacatgccta tttaaccata      2400
     tcaactatcc agtatatttc ctatcgtcca aaccacgaga gcctccacat aaaatataga      2460
     gcctagccga gatactgtcc tactccacag tcgactccca tataactaaa ccctagctat      2520
     tatactacca aaacctacca ctagcaaata ctagccccat aatccctata ccctataaaa      2580
     gagataggtt ataccttaaa ccctagccct cttagtcgtt tatcgttttc ttattatttt      2640
     atggctttta ttgaatttgg ttcttcctct ttctcagtaa agactattgt cttttggatg      2700
     gcaacctatg gtatttcgag aatcgtataa tcaggttgcc tatcttggat ttatttgcgt      2760
     tggagcaagg caagttatta ttcctcccct tgagcataat tatcctatat tctatatctc      2820
     tattctatgc attagccatt catgattttg aatgcataat ctgaacatat agcaaaccag      2880
     ttatatgcta gcttttgctt agccctgcct agttagattg cataaaacat aatgaactta      2940
     gattgggaca gtacgcaaga tttggttgat ttccgggtgg ctagtactgt ctcggtcgat      3000
     ataagtttac caagtactta tgtcaaacga acgagtacga tcgcagcttc tagaatgggg      3060
     acagacctag atattatgtt aattaacaat gtggtacctc tgtacagtgg ttcttatata      3120
     agtcctcgcg aaggaggcaa atatatgccg cgaagggcaa atgtgatatt taccgaggcg      3180
     caggtaaata tcttgattat cgcgcgatgt gtgtgtgaat ttatgaaaac ctggttgaga      3240
     tgacatgggg tctctcatcc agttctctct aaaaaccccg ggaacgccag aactcctctc      3300
     gctgctgata acattacatt cagagcgcat gtggactaga gttcatggaa caggtgccac      3360
     aattgttaat aacctaatac taggccatga ctaagctaat gattattggc aagtcgtaga      3420
     ctgcgggtaa agcgtacatc tactgcaata tgaatatcct tgaatctatt cgaatagccg      3480
     tgctcacgga ttgagcatcg ggactcatat ggtactttgg ttagaaatat aattcaagat      3540
     tttcttaaat actgttgcat atcaagcatt tcaggatttc tacctcttta ttctcagctt      3600
     tctgcaagta aacctagctc tacacagata ttaccatttc atatattcat tattggttaa      3660
     tataatagct tgctgagtac gttgtactca cccttgcttc aacccctctt tttcagagtt      3720
     taattggagt ttttgccgaa gctgggagtt caatcacata agttagttcc ctttaaacct      3780
     aatcttcaag tctagtgtag ttagatggtt taattctata gtaaaacggc agagttgagt      3840
     catcgtatag cctctgctgt aatagttagc cacaaacttg taaatgtcct attattttat      3900
     ataaagatat ctcctttgga gtctttacca aatgtatgcg atgaagatct aaattgttga      3960
     acctgtatca atctactgat ccagggcttg atacagttaa acatgtcggt ttccgaatcg      4020
     ttagttttga gagccgaca                                                   4039
//
ID   RETRO1_I    repbase; DNA   ; ORY   ; 6156 BP.
XX
AC   AP002816;
XX
DT   06-NOV-2002 (Rel. 1.1, Created)
DT   06-NOV-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   Oryza sativa retrotransposon RETRO1_I, internal region.
XX
KW   LTR retrotransposon; RETRO1_I.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-6156
RA   Sasaki T., Matsumoto T., Yamamoto K.;
RT   "Direct submission.";
RL   Direct Submission to Genbank (26-JUL-2000).
XX
DR   Genbank; AP002816; Positions   10063   16218.
XX
SQ   Sequence 6156 BP; 1173 A; 1853 C; 1882 G; 1248 T; 0 other;
     tcaggggtag aagcgacgaa ggtgttcaat gttccacggg tttggcagct ccgtgccgtc        60
     gcccgtggcc agccgtaccg agcccggccg ggggacaccg accactcgat acggaccctc       120
     ccacattggt gagagtttgc tcaatccagc acgcgtttga acgcggcgta ggacgaggtc       180
     gtcgacgcag agtgatcggg cccggacgtg gcgctgatgg tagcgccgca ggctctgctg       240
     gtagcgcgca gctcggaggg ccgcgcgccg ccttcgctct tccaagtagt cgaggtcatc       300
     tctacgaagc tgatcttgat cagcctcgca gtacatggtg gcccgaggag acctcagggt       360
     aagctcagat gggagaaccg cttctgcgcc gtagacgagg aagaaaggcg tttccccggt       420
     cgctcggctt ggtgtggttc ggttcgccca gagcaccgct ggcaactcct cgatccatga       480
     atcgccgtgc ttcttgagaa tattgaaggt cttggtttta aggcctttga ggatttctgc       540
     attggcgcgc tccacttggc cattgcttct ggggtgggca ggtgaggcga agcagagctt       600
     gatgcccatg tcttcgaagt agtcgccgaa gagttcacta gtgaattggg tgccattatc       660
     cgtaataata cggttaggca ctccaaaacg ggccgtgatg cccttaataa atttaagagc       720
     agagtgctta tcgatcttga caaccggata agcctcgggc cacttagtga acttgtcgat       780
     cgcaacatac agatactcaa acccgcccgg ggcccgtttg aacggcccca ggatatcaag       840
     cccccagaca gcaaatggcc atgacagtgg tatgatctgc agggcctggg ccggctgatg       900
     aatttgcttg gcgtggaact gacacgctct gcatcgccgg accagatcga ctgcgtcatt       960
     gagagctgtc ggccaataaa atccttgacg aaaggccttg ccaaccaggg tacgcgaggc      1020
     ggaatgggct ccgcactcgc cctcatggat atctgcaaga agctcaacgc cttgttcctg      1080
     aggaatgcac ttcaggagga ttccgttagc cgcgcgccga tagagggtcc cttctaccag      1140
     cacatagcgt ttggaaatgc gttgtacgcg ttcactccct tcgcggtcct caggtagagt      1200
     cttatctgtg aggtatgttt ggatctcaga gatccaagca atcaatctaa gggagcttgg      1260
     agcgctccct tcgggtcccg aggcctggac tccgacgggc ctcgggggcc ggtcaggcgc      1320
     atccgtctcc cctaagggat cgggtcgcgc cgacggctgg gtaagccttt cttcaaaggc      1380
     gcccggtggg gtctgggctc gcgaggacgc gagccgtgag agttcgtcgg ctatcatgtt      1440
     atcccgcctg ggcacatgcc gaagctctat cccgtcaaaa tggcgctcca tacgccgtac      1500
     ttggcgcacg taggcgtcca tctgcggatc agagcaccgg tactccttac agacttggtt      1560
     aacaaccagc tgagagtcgc ctaacaccag gaggcggcgg atccccagcc cggctgccac      1620
     cctgagcccg gcaaggagtc cctcgtactc tgccatatta ttagtcgctc gaaagtcgag      1680
     acggaccaag tatctgagga cgtctccgtt tggagaggtc aacgtgaccc ctgcaccggc      1740
     gccctgaaga gacagagaac cgtcgaattg catcacccag tgggcggcat gaggcagctg      1800
     tgaggggttc gtgctagcct cgggcattga gacggtctct ggagccgggg tccactctgc      1860
     cacaaaatcg gcgagggcct ggctcttgat agcgtggcgt ggttcaaagt gcagatcgaa      1920
     ctcagaaagc tcgattgccc attttaccac tcgtcctgta ccctctcgat tatgcaagat      1980
     ttgaccgagg gggtaagacg taaccacagt gacccgatgc gcctggaaat aatggcgtag      2040
     tttcctcgag gccatcagaa tagcataaag catcttctgg gcctgtgggt atcgggtctt      2100
     ggcgtcccgg agggcctcac taacaaagta gacaggccgc tgcacccttc ggcggggccg      2160
     atcctctttg ctaggggccg aacccccggg gcgttcttcg tccaagtggc ccctcggggc      2220
     gcactcgtct tctgtgccga tgacctcggg gtcggaggac gacaggagca gccttcccac      2280
     agtggcctcg gggccgtcct gggggtcggg ggctcctggc atcgtcggac aagcgggcaa      2340
     agggccaact ccggtcgtca ggggcctctg gcctccgttc ggctcggggg cctcttctcc      2400
     ctgctctttc ccgggtcgac tcagcacagg gttagcctcg gggtcaaagg gcgctaagtg      2460
     cggccttccc gcagtggcct cggggccttc ctgagggtcg ggggcacccg gcaccgtctg      2520
     acaagcgggc ggagggccga ctccggtcgt cgggggcctt aggccaccgt tcgactcggg      2580
     ggcctctcct ccctgcctgc tcccaggcca aatcggcaca gagtgggggt gcgcagaatg      2640
     agaattgtcc tcatcgcgct ccacaaccaa cgctgcacta actacttggg gggtcgctgc      2700
     taagtaaagt agcagggact catttggctc cggggcgact agaaccgggg gagagctgag      2760
     atatgccttt aattgagtaa gggcatgttc agcttcctcc gtccaagtga acggccccga      2820
     gcgcttgagg agcttaaaca agggtagcgc cttctctccc agccttgata tgaaacgact      2880
     tagggcggcc atgcaaccgg tgacgcattg cacatcccta agtttgctgg gggggcgcat      2940
     ccgctcgata gctcgaatct tctcggggtt ggcctcaatg cctcgggcag agaccaagaa      3000
     cccgagaagc ttgcccgcag gtacaccaaa cacacactta tcggggttca gctttatgcg      3060
     ggcggagcgg aggttctcaa aagtttccgc tagatctgaa agtaaagttt cttggttgcg      3120
     cgtttttaca accaagtcat cgacatacgc ctcaacatta cgtcctattt ggctacccaa      3180
     agaaattcga gtagtacgct gaaaagtggg acctgcattc tttaacccga agggcattga      3240
     tgtataacaa taggttccta cgggggtaat gaacgcagtt ttttcctcat cctccctagc      3300
     catgcgaatc tgatgataac cagagtatgc atctagaaaa cacaaaaggt cgcaccccgc      3360
     agtggagtcg acaatctgat ctatgcgagg cagggggtaa gggtccttag gacatgcctt      3420
     gttaaggtcg gtgtagtcga tgcacatccg aagcttgccg ttcgccttgg ggacgaccac      3480
     cgggttcgcc agccactccg gatggatgac ttcacggatg aatccggcct ccagaagtct      3540
     cgccacctcc tcgcggatga aggcttgacg ttccggggcc tgccgccgca ctttctgccg      3600
     gaccggcctt gcgcccggcc gcacggcgag acagtgctca atcacctccc tggggacccc      3660
     gggcatgtcc gctggtctcc atgcgaagac atcagcgttt gcccgcagga aggagacgag      3720
     cgcgtcttcc tatttgccat ccagaagacc accgatccgt gtggtcttgg atgggccgtc      3780
     gcccaaggca acctccttga ccgggacctc gtcgcatgtg gccatccgct gcctcggggc      3840
     ggtgggggca gaggggccaa gcctctcgtc accaccctcg ggcttggacg cagcagcgag      3900
     acggtcagcg cgctgctcca tgcaagcgag cgcgacttta agatcgccat ggacagagat      3960
     ggggccaccg gggcccggca tcttcatctg gaggtaggcg tagtggaccg ccgccatgaa      4020
     cttcaccaac gcgggtctcc ctaggaccgc gttgtagggc agactgaggt ccgccacatc      4080
     gaagctcacc cgctccgtgc ggaagttggc gggtccaccg aaggtgaccg gtaggtcgat      4140
     gtgacctaat ggccacgtgt gccccggcgt cacaccgatg atcggttgag acggctggag      4200
     caccatcccc ggggccttga tagcatcaaa ggccgcgggg gaaagaatgt tgagagccgc      4260
     tcctccatct atgaggacac gtcccaactt cacgttgcag atggtggggg aaaccaccat      4320
     cgcaacctgc cctccccggg caatgcacgg tgggtggtcg gtctggtcga aagtgagagc      4380
     gacctccgac caccgcgccc gacgcatcgc ctcatgagta ggggccatgg tcagaagctc      4440
     tcgcttcata gccttgaagc tccggcgaga gacatgagca cacgctcctc catcgacggt      4500
     ggcaatggtg gccccaggtt cttggaaacc taggtcatca tcaccatcat cgttgtcaac      4560
     agcgggggcc ttctgcttgg cctcacttcg ccgtttgccg gaaggaaccg ccggggactt      4620
     gccctcacgg cgttcctgcc tcctgtcctc ctcccacttc ctcgttcgct cagccaaatt      4680
     tttgactgcg cgacagtccg cgagatcgtg gagggaggta ttgtggacgg agcaccacct      4740
     gccggcgggg cgctccttgc tgggagtacc agcctctttc tttttgtcgc tcgcaggcct      4800
     cccctttcgg gtggcccgcg gagcgccctc gacggcgagg acatgaccct cgtcgccgga      4860
     acggtccgac ctcttcttcc tcctcctgtc acgccgccct gtctgagcgg cggatccggg      4920
     ggcggccgaa gctgctactc cggaaccgga ggagttccat gtccacgctt cctccttacg      4980
     agccactcgg tccgcaagct gaaaaagctc cgcggtagtc tggggctctt tggaagcaat      5040
     cttttcgagc atgcggttgt gccgcacgcc ccccctgaac gcgtagatca ccgcgtgtgc      5100
     agggatgcat ggtatagtat tgcggacttg gcaaaaccgc tgaatgtacg agcgaagcga      5160
     ctcatcatcg ccccgctgta ctgcatgcaa gtccgcttct tcgcctgggc gcggatatgt      5220
     gccttggaag ttcatggtga actgttggca caaatcttcc caggagtgga ccgacgcggg      5280
     tggcaggttc attagccaac cccgcgcctg tccttttagg gccatgggaa agaaattcgc      5340
     catgaccctg tcgtcacccc cagcggcctc gatcccggtc gtatagacct ggagaaactc      5400
     ggtggggttg acgctcccat cgtacttctc agtgatggtg ggccggaacc ttgggggcca      5460
     acggacattc cgaagactcg ccacaaaggc tctacagcca acaccaccag ccgggggcac      5520
     ggagggctgg tcctcacgtc catgtcgagg tgacactctg gacgaggagg caccctccgt      5580
     tgcacggggg gtacgccggc tattacgccg gcgctcgatg ttgaggcgtg catccggctc      5640
     cccatgctga tccttccgag tcgaaggtgt cgacgaggga gtagcagccg aatgacgtgc      5700
     agccgccgcc gctcgccgcg ccctccgcct tgacgacacg gagccggtgg tagcggcgcc      5760
     ggaggtcttg gtggtggcgg accgtccacc agcacccaag cgctgctgag ccgtcatgac      5820
     caagttggcc acgtcttcta gccatcgttg ggctggagac tccgggtcat ggacgacagg      5880
     cgggtgtcgt aggagcgcgc cagcagcctg aagcgcgccc tgaggcgtgc tgccatcgcc      5940
     gtagacgagg aggcgacgct ccccatctcg ccgttctcct gcatcacctg cggctggtga      6000
     cgccgcggat ttgtcgaccc tctcaagcgc ctccccctgc ttagggcttt ggcgcggagg      6060
     aggtggagga gtacgagctc gacggcgtgg attcggctcc ccatcgtcgc cgcttacact      6120
     cggcgagagg tcgtgcgttt ttccttgctc agccat                                6156
//
ID   SZ-45LTR    repbase; DNA   ; ORY   ; 2474 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice long terminal repeat SZ-45LTR.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Long terminal repeat;
KW   SZ-19LTR; SZ-45LTR; retrotransposon.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-2474
RA   Jiang N., Wessler R.S.;
RT   "SZ-45LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2(7), 101-101 (2002).
XX
CC   [1] (Consensus)
XX
CC   Similar to SZ-19LTR.
XX
SQ   Sequence 2474 BP; 680 A; 593 C; 610 G; 591 T; 0 other;
     tgttactgtg aaagcacggt ggcctgggag atctgcttaa ctccagtact ggtccaaggc        60
     ttgcctcaaa gtgctaaggg ggtgccagct ggtttgatcc cgcaaccagt aaagaaacaa       120
     aagacaggat tagttagccg atagccaatc ggctgatagg ccgatagcgc atcattgatg       180
     gtcccagccg atgggataag accgaatacg acggcctggg agatctgctt aactgcagtg       240
     caggtacagg gcttgcctcg aagtgctaag ggcgtgccag ctggtttgac cctgcaacca       300
     gcaaggaaac aaaagatagg attagtcaac cgatagccaa taggccgata ggctgatagc       360
     gtattgttga tggtcccagc taatggggta agaccgaacc ggctatagtc ttgataaatc       420
     aaagaatata aaaccctaaa tatgccctat cggctgtaat actgtccata aaggttaata       480
     aaagatttta agacaatatt gagaaaatag ccaatataac aatatttccg gtataacaat       540
     atttagagca ataaggataa cgtactagct aatactccag tacaaatcta tataagcata       600
     tcaatctata gcaatatatt aagtaaagtt cagtagtcaa tattgatagc acagccaatt       660
     tgacctagac ttgatatgat gctattaggt gatctgtcta tatagatggt gaatatacat       720
     gaaacagata aagaaacatg catattagat aggatcggct gaaataccga tactacccct       780
     attatcagtc aaaaacaggc tagagctcat gattctatgc acgacttagc agatctaatg       840
     tactgatgca gcactaagta tgtgtcgtgg gggcgattcc atggtcagtg gggagtggag       900
     accccttccc gtgagaatgg agattcggcc aaggggtttg tcggcgcccg gacggtggtc       960
     gtgccaaggc ggcatggagt gtgtcgcgag gggtggcaga ggacaagggc gcgagtgtgc      1020
     gcagggctcg agctagcccc gtggcgggag gcgaggagat ttatataggt tcaggccacc      1080
     cggaggtata ataacctact cctgtgtttt ggctttcact aactacccta ggccgacgac      1140
     cgtagggaag gccggccgac ggagtataag gtgaattggc tagcctaagg gaagaattag      1200
     aagcaatgta tggcaatgtc cccggccttc caaaaagacc gaccccttaa atagttgcta      1260
     gtccccccct tatagtgtaa ggtggggctc acaatattac ctaactaccc ttgaaacctt      1320
     cacgtcaatt gtcttatctc tgccgtctga ctttttggct gtgatcctca agaaaccctt      1380
     caagtcttgc agttcacaca gccccgagct ccaaagtcct gtcagaggta gttgggcttc      1440
     caccagctcg cacaccacgt ggtgcgaggt gggcctagta gggcctaggc taccttcggc      1500
     gggacacggc tcttccctac cggctaggcc gagggaaggc gtccgtgggc atgtgtgaca      1560
     cgtgtcgggg gtgccatcga ccctaacgat ttgccaccca agtcttgtcg aagtctctcc      1620
     gttgtcagcg ggagaaatct tctataagct tggtttcatg atgagagggg gtgcattgcc      1680
     ttacaactgg cccttagact tcacacctcc cgtcaggact taaggtcaca cccctgacat      1740
     cctttaaagc ggtagttagg atatttctag tgtaccttac agaggaaggt acaaccggac      1800
     agatatctcc gtgttacttc cctagtaaac ttccatgctc ttccttcagg gagaaggagg      1860
     agcgattcct actgggatcg aaggcagccc gggccccggg cgtgccgaca ccgcggctgc      1920
     cttcaccacg taacttggcg agaagacgtt cttgttatgg aggcagaaga cggaaaccga      1980
     gacacacaca cacacacaca gagccgctgg cttgcctgga cagactcagc gatggtcata      2040
     atacaagaac taatacatct aaaacgacat aatagccccg atagcacgag ccatcgagac      2100
     gggttacctc tgtggagata actcgccgaa aacaagtaaa agaaaagggt ggcgatgcgc      2160
     caaagttgta ttggatttgc tttaatacaa ttgcctttat tgagcttcgg cgcgccgaag      2220
     ttatattaga tacaattgcc tttattgagc ttcatcttta gtccaatcta gacccatacc      2280
     gagcccaagc tatgccatat cagctgtatc ggccatcagt cccctcagct tgatcaatct      2340
     tcagcccttg tttcctaccg atacggtctc cagccgatac acagtccgat tctgagttca      2400
     actaaatcca acaccaaatc cgcttcgatc tattccttct tactcgaatc tgatgccaaa      2460
     ttccattatt aaca                                                        2474
//
ID   SZ-56       repbase; DNA   ; ORY   ; 5649 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice retrotransposon SZ-56.
XX
KW   LTR retrotransposon; SZ-8; SZ-56.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5649
RA   Jiang N., Wessler R.S.;
RT   "SZ-56: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 110-110 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-56 has 425bp LTRs. Internal region is related to SZ-8.
XX
SQ   Sequence 5649 BP; 1542 A; 1417 C; 1163 G; 1527 T; 0 other;
     tgttagggtt actaacaaga gcaaactagc taaggactaa gatattcgag atcacgattg        60
     tattatccta atccaacagg atcaggcctc cgccgccatc gcctccaagt gatctcagtt       120
     cataccctct cctctgttcg ttcttctgtt tatatcagtc tcaacacctc atgacagctg       180
     tcggaacagc acaactcacg cacgccatcg cgcaggatgg acttagttac ttggcccact       240
     ctggcccgac aacacgcaca ctgggcttct tatgacgacg cccccggccc aggataggtg       300
     cctcctccct gtcgccctgt agcgcgtcat ctgccttgcc gtccatcttc agttcttcag       360
     attcttcaga cttgtcgtca gccctccctc ctggagcctg agtccttcca aggcttggcc       420
     tgacaatccc ccattcttga aaattggctt gtccccaagc caatgctcgc ggaaagcgat       480
     tgcataaatc ctccatatcc tcccaagtgg aatcctctgc agatgaatct gaccaatgcg       540
     tcagtaattg aaccacaacg cgattacctt ttttagtcag acgtttatcc aagaattgga       600
     ggggaatctg aaatgctccc aaggaagatg gtaattcctc ttgcactggt ttagaaaacc       660
     ccacagcagc tcgtaattgg gacacatgaa acactggatg aatggaactg ccagctggta       720
     gctgtaagcg ataagcaaca gatcccaccc tgtcaagaat ctgaaatggg ccaaagtagc       780
     ggaaagccaa tttgtgacaa gcacgttgag ctaccgacgt ctgtacataa ggctgtagtt       840
     ttaagtacac ccaatcccct actttaaact gcctgaaact gcatttctta tcagcttgat       900
     gtttcatctg ttgttgagct cgatgaagat gctgctgtaa taactgttgc atcagcttcc       960
     gctcattatg ccattcctgc aaatcagtga tctgacaatc ctctatagta atgccaaagt      1020
     gagctggagt gtacccatat aagacttcaa aaggagtttt gcccaaagta gagtgaaagg      1080
     agttgttata ccagaattca gcaagatact accaagatgc ccacttcctt ggagtagcat      1140
     gcacaaagca acgaagataa atttccagac actgattaac tcgttcggtt tgcccatccg      1200
     tttgaggatg ataagctgaa cttttatgca gtttagttcc agacttagag aagagctgct      1260
     cccaaaattg actcgtgaaa atcttatctc tatcagaaat aatcacatga ggtaggccat      1320
     ggagcttgta gatgtgtttc atgaactctt gagctactgc acttgctgtg aaagggtggg      1380
     aaaggggaat aaagtgactg tatttggaga acttatcaat taccaccaac acacaattat      1440
     aatgagatga acgtggcaac ccttctataa aatcaagcga aatcacttgc catgctccag      1500
     ctggaactgg caacggctgc agtagtccag gatatttagc cctgtctggc ttggcttgca      1560
     agcaaacttg acaggactgc agatgagtct taatcatttt cttcattcca gtccaagcaa      1620
     acatgccttt agcttttcta taggttacag gaaaacctga gtgatcaccg aaaggagtag      1680
     agtgaacctc agtgatgatc ctgtgctgca atgcaggatt gtctcccacc caaattctgc      1740
     ccttgtactt caatactcca ttgcacaatt gatagtgggg tctgctgcta ccattgacaa      1800
     ttagctccga aatgatctgc ttggtgtgag gatcctgatc ataaccttga atcaggtctt      1860
     gcatccatag cggtacacat tcagacacag cgtgtatctc actggtaaat ggctcccttc      1920
     ttgaaagagc atcggcagca gcattagaag aaccctttcg atagcagatc ttatactgaa      1980
     gacccaagag cttagtgaaa gccttctgtt gccaaggagt atgcaaccgt tgatcagtta      2040
     aatgcatcaa actatgatga tcagtgagga tagtaaattc cccatgctgc aggtatggtc      2100
     tccaatgttc tacagccagc aatatagcca tgtattcctt ttcataggtg gacaagcgtt      2160
     tagttttagg accaagagct ctgctaagga aagcaatggg atgcttgtct tgagaaagaa      2220
     cagctccaat cccaagttca ctggcatcag tttctacagt gaatgattta gaaaaatctg      2280
     gcaatgcgag tacaggagca gagcataatg cttgtttaag ttgttgaaaa gcagtttcag      2340
     tttcctcagt ccacttgaat ggtattccct ttttgagtaa ttgagtcagg ggtcggctga      2400
     tcacaccgaa attcttaaca aattttctat aataacctgc taagcccaga aagcccctca      2460
     acttcttgat agtagttggt tgggtccaat taactacatc ttgaatcttt cgtgggtcag      2520
     tagatactct ttgaactcct atcacgtgtc ctaaataaga tatctcttgt tgagcaaagg      2580
     aacacttact tagtttgacc ttccactgac tagcagagag taattgtaaa actgttctga      2640
     tgtggagcag atgtgattcc aatgtgggac tataaatcaa aatgtcatca aaaaagacca      2700
     agacaaattt ccttaggaca ggggacaatg tgtcattcat ggcattaagg aaagtagctg      2760
     gggccccagt aaggccaaag gacatcacct tgtactcata atgcccagaa tgagtttgga      2820
     aggctgtttt atactcatct ccctcagcca ttctgatctg atggtatcca gctcttaaat      2880
     ctaacttgga aaaccactgg gcccctgata attcatctaa cagctcttct attactggga      2940
     caggatactt gctcttgaca gtgatattgt tcaactgtcg ataatcaata cagagacgcc      3000
     aggatccatc ttttttcttg acaagaaggg caggagaaga gaaaggactg tggctgggtt      3060
     gaatgactcc agtcttaagc atttcagtga cttgtttttc gatttcatct ttcagagctg      3120
     gcttataccg gtagggtctc aaattgacag gtttggctcc ttcaatgagg ggaatatggt      3180
     ggtcacatgt tctcttagga ggtaattcag taggttcaga gaatagttcc tgaaattctt      3240
     gaagtaaggg ttgtacaata gtggggatga cagcatgttc aggaacttcc acagcattca      3300
     gctgaaccat acacatgata gatccattct tggacatacc ctgtaactgt gctcctgtta      3360
     tggttggaca gcaatcagtc tgaggaacaa tgccctgaag tttcaccagc tgatgttgat      3420
     gttggaattc aagccactta tgaatccaat caatttgcat agggctaaac tgctccagcc      3480
     aatccattcc caatatcaca tcataattac ccagtggcaa taacctgaaa tcactggtaa      3540
     aattatgacc ctgtgtccac cagttgcact taggcaaaaa catatcacaa gctatctgcc      3600
     ctccatcagc cacttgtacc ttaatggtct gaagtaattt ctggacacca tgcaatttgg      3660
     agccaatctt agtgtcaata aaagaatgag tactacccga atccaccagc atgagtaact      3720
     ctgtaccctg gacccagcct ctgagtctaa ttgacttagg agaatcggta ccatgcaaag      3780
     catgaaatga tattgccatc aaagaatcgt catcaatttc aggagttcca tcagaacagc      3840
     tattttcttc acctccagat tgcagggcat gaatcaactc ctcaacaata tggagttgga      3900
     ctgatgtagc acatttgtga tccttactcc atctctcacc acaaacaaaa cagagcccct      3960
     ttgatcttct gtaagctctg agggccgata tcttatcatc cttgggcctg ctaaactctg      4020
     cactcctttt ctcttcagta tttatcaagg ctgtactctt gctaggaagg acagactgag      4080
     aaaaatttga ggtggattta gatttaacaa aggttccaga gtcatttttc ttgacattga      4140
     tagcctggac accttccaaa gcttctttct gcaaaagagc taaagtacat gcagtgtcca      4200
     ggtcctgtgg cctgtgcccc atcacaccaa ccctgatatt gtccttgagt ccatccacaa      4260
     atttggtcac aaaatagata ggttcatttg cccccccata agccaacaat tgatgcatga      4320
     tactatcgaa cctatccaca taatcagcca cagaagaagt ctgagaaaca tgaatccact      4380
     gtctaataag agcttgctgt ctgtcccgag agaatctagc acaaactctg tcacataatt      4440
     caaaccaagt gacccccatc aactgagccc tcactgactg aagccagaac gctgtgttcc      4500
     cacaaaaatt cagagtggct accttgaccc aattttgagg atgaatccca tacacatcaa      4560
     aatacacttc acagttggat ttccacatgt gagggttatc tccgttgaat tgcggacagg      4620
     acatgggcgg tacattacca atcatcctgg cactgaaccc cgtgttttca aactgagatc      4680
     cccaaccctc atttgaatga tgaacaggag aagtggggtc aagctcacgc gtacctttgg      4740
     tcggtggtgt cgccttgtag atcggctcct tcttgggtaa cgccacggtc gtcaccttgc      4800
     cggcgaattc atctcctgaa ggaggctgat tggggttgtg ctccaattgc tccaccttgt      4860
     tactcagcgc caccagatcg atcccgaggt catccacctt cttctccacc gcgggcaacc      4920
     tgatctccag agacttctta agttctgcga aatcagctcg catgcgggcc tcagcctctt      4980
     cccgtttctt ctcgttttcc gccattgact tcaacagcaa atccaactta ctatcctgcg      5040
     ccatacctcc actctcgtct cgatctcaca caccaactca cccacgctcc gaattcagct      5100
     aacctgagga aggcaagttg ccttttcgcg gggtctgatc cgaagaacag ccccaatcct      5160
     tcccccggaa tttcacagcc gaatcaagag attagagggg cgagtttggc tctgatacca      5220
     attttgttag ggttactaac aagagcaaac tagctaagga ctcagatatt cgagatcacg      5280
     attgtattat cctaatccaa caggatcagg cctccgccgc catcgcctcc aagtgatctc      5340
     agttcatacc ctctcctctg ttcgttctcc tgtttatatc agtctcaaca cctcatgaca      5400
     gctgtcggaa cagcacaact cacgcacgcc atcgcgcagg atggacttag ttacttgacc      5460
     cactctggcc cgacaacacg cacactgggc ttcttatgac gacgccccca gcccaggata      5520
     ggcgcctcct ccctgtcgcc ctgtagcgcg tcatctgcct tgccgtccat cttcagttct      5580
     tcagattctt cagacttatc gtcagccctc cctcttggag cctgagtcct tccaaggctt      5640
     ggcctgaca                                                              5649
//
ID   SZ-17       repbase; DNA   ; ORY   ; 3386 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice copia-type retrotransposon SZ-17.
XX
KW   LTR retrotransposon; COPIA superfamily; SZ-17.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-3386
RA   Jiang N., Wessler R.S.;
RT   "SZ-17: a copia-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 77-77 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-17 is a copia-type retrotransposon. It has 135bp LTRs.
XX
SQ   Sequence 3386 BP; 917 A; 784 C; 1045 G; 640 T; 0 other;
     tgaaagtgtg ggaatgattg attgtattcc acaagtgtca agggattaca tataggggca        60
     gctggggtgg cactcaggcc caccgcacgg gcccaattac atccacaatc aaggcctaat       120
     tacattagtc taacactccc cctcagtcta atcgggagcg tcgctaatgg ttagactggt       180
     cctaaactcc tgaaacagcg aggtgggaag acccttggtg aagacgtcgg cgtactgtga       240
     agtcgtagga acgtgaagta cccgaacatg tcccaaggca accttctccc gaacaaagtg       300
     aagatcgatc tcaacatgct tcgtccgttg gtgctgtacc gggttgctgg aaagatacat       360
     tgcactgaca ttgtcgcaat agacaactgt agctgtgcga ggtggtcggt gaagctccat       420
     cagcagctgt cgcagccaag tcgcctctgc aacgccattc gccacggcgc ggtactcagc       480
     ttcagcactg gagcgtgata ccgtgtgctg ccgcttagag gaccaggata cgaggttatc       540
     gccaagaaac actgcgtacc cagaagtaga gcgacgtgtg tccggacagc ccgcccaatc       600
     tgcatcggtg tatacaacaa gatctgtcgg tggtgagcgg cgcatggtca aaccgagaga       660
     cagggtgcct tgtatgtagc gcagaatcct cttgagagca gccaaatggg gttccctggg       720
     atcatgcata taaagacaca cttgttgaac agcaaatgca atatcggggc gagtgaatgt       780
     caaatactgg agagcgccag caagactgcg atactgtgtg gaatcagcaa ctggaggtcc       840
     atctgcagac aatttggagt gcacatcaac aggagtgctg caaggtttac actcacccat       900
     cccggctcgc tccaaaatgt cctgagagta ctgacgttga gacaaaaata atccactggc       960
     aaaacgcgtg acggtgatgc ccaaaaagtg atgaagggga cccatatctg tcatagcgaa      1020
     ctcacgctga agagcagcga tcacctgctg cagaagactg gcagatgaag cagtgagaac      1080
     gatatcgtca acatagagca gcaacaagac cgtgtcgttc ccgcgccgat ggataaacag      1140
     ggaagaatct gattgtgctt caataaatcc aagggagatg aggtgagaag caaaccgatg      1200
     atgccaggca cgtggagctt gcttcaggcc atatagcgac ttgttgaggc gacagacaag      1260
     atcagcatga gatgggtccg caaagccagt tggctgaatg caataaactg tctccgagag      1320
     agtaccgtga agaaaagcat tcttgacgtc aagctgatgg atgggccagt cctgagagag      1380
     tgccagtgag agaacaactc gaacagttgc tggtttgacc actgggctga aggtctcatc      1440
     ataatcaaca ccaggtcgct gagtaaaacc ccggagaacc caacgagcct tgtacctgtc      1500
     aagagaccca tcagagtgaa gcttgtgacg aaaaatccac ttcccggtga ccaggttaac      1560
     accgcggggg cgaggaacga ggctccaggt gtcattggcg agcagtgcat caaactcagc      1620
     ttgcatagca gcacgccaat tgggatctga caaggcttca cggacagagc gaggcacggg      1680
     ggacaggggc gccgcgtgga gattgagacg atccacgggc tgcgccatgc cagccttgcc      1740
     acgtgtgcgc atagagtgcg cgttgtcgac gggggcgatg gagaccggcc gggtggccag      1800
     tgtacgcccg gtggccgcgg tactactggc agctacctcc gctcggggcg gaggggcagc      1860
     agtaccggcc agaggagaga gcgacggggt cgtgccgctg gtcgcagcac gaggcgcgct      1920
     ggtcacagcg cgagtagtgc tggtcgcagc gctgggcgcg gccgtgcgag caggactgat      1980
     cgcgccaggc tggctggtcg cagctccagc cggagacccg ccgtgtggcc cggcctctgg      2040
     tccagcaagg gtagccgggg accgaggccc gatgctcgac ggcgcgggag ggggcgtgga      2100
     gggctcaaca gccccacgcg cggcggagga ggtacctgca tgcacaaact ttgctcgagg      2160
     gggttgagcg gtgagttcat tatcatcaag aaaaatatcc aaggcggagg atgccatggg      2220
     tgatgtagac atgtcggcga agggaaaaaa ggactcatca aaaacgacat gtcgggaggt      2280
     gatgatgcgg ttcgacccaa gctcaaggca ccggtagccc ttgtgttccg aagaataccc      2340
     gaggaaaaca catagggatg accgaggagc gagtttgtgg ggggcagtgg atgacatatt      2400
     aggatagcaa gcacacccaa acacgcgtag atggtcatag gtgggctggg tcgaatatag      2460
     gtggaagtag ggggtggaag aggacagtgt cttggtgggg atccggttaa caaggagggt      2520
     ggcggtgtga agggcctcga cccagtagac cggaggaaga catgcttgaa ataagagaga      2580
     gcgcaagata ttgttgagtg tgcggagaga gcgctcggcc ctgccatttt gctgggacgt      2640
     gtagggacac gacatgcgaa acgcaacacc gtgagagagg aagaacgtgc gggcagggga      2700
     attgtcaaac tcccggccgt tatcgcactg aacgctctta atggtggtgc cgaattgcgt      2760
     tttaacatgg gcaaagaaat tggcaatggt ggaaaaagta tcggatttta ggcgtagtgg      2820
     aaacgtccaa atgtagtgtg agcaatcatc taaaatgaca agataatatt tatagcctga      2880
     cacactgaca atgggagatg tccacagatc acagtgtatt aaatcaaaat tattggaagc      2940
     tcgagaacta gaagaactga aaggaagtct agtgtgatga ccgagctgac aagcatgaca      3000
     taaatgaggc aaatcatctt tagtacatga aatgacactg gatctaatga gcttggacaa      3060
     agcttcacgc ccaagatgac cgagacgacg atgccaaagc gaggtgggtg cggcgaggag      3120
     ggcatgagtg ctggtggctg gtgggtagaa cgggtagagg tcgccagagc tattgcacct      3180
     ggcgatcacg ttcctggttt ccaaatcctt cacagaaaga ccaaacggat caaactcaat      3240
     agaggctcaa gtgaaagtgt gggaatgatt gattgtattc cacaagtgtc aagggattac      3300
     atataggggc agctggggtg gcactcaggc ccaccgcacg ggcccaatta catccacaat      3360
     caaggcctaa ttacattagt ctaaca                                           3386
//
ID   RIRE3_LTR   repbase; DNA   ; ORY   ; 2316 BP.
XX
AC   AB014739;
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   10-JUL-2002 (Rel. 7.06, Last updated, Version 1)
XX
DE   Long terminal repeat from the gypsy-like retrotransposon RIRE3.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; Long terminal repeat; RIRE3_I; RIRE3_LTR.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-2316
RA   Kumekawa N., Ohtsubo H., Horiuchi T., Ohtsubo E.;
RT   "Identification and characterization of novel retrotransposons of
RT   the gypsy type in rice.";
RL   Mol. Gen. Genet 260, 593-602 (1999).
XX
DR   GenBank; AB014739; Positions       1    2316.
XX
SQ   Sequence 2316 BP; 510 A; 614 C; 529 G; 663 T; 0 other;
     tgtcgcgtcc caaatcgact ctaaaatata tcctcgaaat tgtgcaaaga ataattaaaa        60
     ttcaatgtga aagcctccaa caattaaaat gtgcaaagat aaaagtcaaa tgaggcttgg       120
     aggatttttg tatatttcct aaaagcctaa aatgcttaaa taaattttag tggaattttc       180
     agagcacaaa taataattga taagaaataa acaaagttaa aatgatttta taaaaagaaa       240
     aaccctaaaa gtcccccttc ccacccttag gccagcccgg cccatctctc ctccccccct       300
     ctctctcctc tccccgcggc ccactcggcc tctccccgcg cgcgcgccgc tgacgggcgg       360
     gcccgcccgc caccctcgct gacgggtggg gcccacccgt catccccttc ctcccgccgc       420
     tccagccgcc tcccctgcgc cctagcgccg ccgccgccgc gaatcccgcc gcctcccgcc       480
     gtccccgcgt gaaataaagt ggggggaatc gctccccgtg atcccctctc cctttccccc       540
     catttttccc tctctctctc tctcgcgcgt tcaaacgggc ggatttgccc tcgcaaatct       600
     cgccagcgcc attgatggtg gccggacctc ccgcgccggt ttccttcccc tccggccgct       660
     ctctccccct tccaacccta ttaaaaccct ccccgtgcct ccctcgcccc tttccgcccc       720
     ttgccacacc gtctccccgc cggaatcatc cttgaaggtt gaagccgaca tttgggaaat       780
     gagcaaggca agtcacatca tccttgaaca tattgaatcc cagtttataa aattattttg       840
     atttaaatta ttgcattatc gctttattta aattcccgcg ttattactgt tttatctagc       900
     catgcctatt tacctttgtt atgaccttat tattgttatt gttattattt ccttgttcac       960
     cctagaataa ataaaacccc aactagtgga cactctactc atggtaccac tggtatgatt      1020
     ttaggtagat gtttcgctgg ttaattaggc aacattaggt ggttttacaa ctctagactt      1080
     tggggatact cttatcacct ggacactatg gaatggttgg attattatgg aattggattc      1140
     acatctcccc ctctattcaa aaccctcaaa atggttttag gctgggctcg gggtgcatgg      1200
     ttttgatagt agcacctcgg ccatataagg accggtcttc gggcctttgt tgcaaagcac      1260
     taccatactt ccacatgtct agtgggtaag gcttagttgg tggctcagtc tggttataaa      1320
     caaaagtaca tggatggaga tggacaaagt cgggggtcga tggacatctc tggggcaaat      1380
     gaaggctaca cgagctgcgg cccggtattc aagatgtcat ggcacagggc cggtgtcctg      1440
     ctgctagggg ctcagtcctg cctacctgtc ccgggggttc cggccgtagg tggggttggg      1500
     tcggtactct tgtttatggc taggatgggt tggaaactat gtcatgtctt ccgtccgtat      1560
     accgtggtgg tatgtggcac gtggttacac gtgaggaaga tgtgtcttgt gggtaaagat      1620
     gtacacctct gatcagagta taatctattc gaatagccgc gccctcggat atgggcaagc      1680
     cgagcaatgt acccaagtta gtgttttaat tcttaaaacc tgcttaacaa ctaaaatgtg      1740
     gaatggttgg cctgggttgg cttgggacga gctgggaccc agggtcgggt tgccagttcc      1800
     gtctgaatca tcctaaggcc tgggttaagg caggttcgtg tgggttcacg gccttggtta      1860
     ataatattgt atagttctag gaccgtgttt acaaagtaac tttgagcaac taagtgactt      1920
     ttaatgctgt ttactgcaaa ccctaacccc tttgcaaaat aattcccttg tactccattg      1980
     catctattct gcacgtgtgg gtgtgtcttg ttgagtgcgt tggttgtact cagtcttgct      2040
     caattttacc caagcccagg agaggactcc ttggagatga aggctttggt gtctagctca      2100
     tgcctgccgt caagcagctg tggtcgtcac cctagtcttc cgctgtttct cggttgtcgt      2160
     tgtgtgctgg gccttcgctt cccgtgtaat aattctattt acgcttccgc ttgttaaact      2220
     ctgaattgta tcaacttttg gtgtaccttg cctcctggga caaggattaa tgcacgcacg      2280
     taaggaacgc ccgttgggtt atttccggtc gtgaca                                2316
//
ID   ATLANTYS-I_OS repbase; DNA   ; ORY   ; 10724 BP.
XX
AC   .
XX
DT   06-DEC-2004 (Rel. 9.11, Created)
DT   06-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Internal domain of rice ATLANTYS_OS gypsy-like endogenous
DE   retrovirus - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   ATLANTYS superfamily; ATLANTYS-I_OS; ATLANTYS-LTR_OS;
KW   Gypsy-like endogenous retrovirus; SZ-19LTR; gag; pol.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10724
RA   Gentles A., Jurka J.;
RT   "ATLANTYS_OS, a rice Gypsy-like LTR retrotransposon.";
RL   Repbase Reports 4(11), 285-285 (2004).
XX
CC   [1] (Consensus)
XX
CC   ATLANTYS_OS is a Gypsy-type LTR retrotransposon from Oryza
CC   sativa. It has ~1500 bp LTRs, and a 5 bp target site
CC   duplication. There are approximately 30 full-length elements
CC   in the rice genome, with average similarity to the consensus
CC   of 90%; along with numerous fragments. ATLANTYS_OS is related
CC   (59% similarity) to the Arabidopsis thaliana elements
CC   ATLANTYS1 and ATLANTYS2. ATLANTYS_OS has weak similarity also to
CC   RETROSOR1 and RIRE2 from rice. A characteristic feature of
CC   these retroelements is that the normal env encoding domain is
CC   replaced by an ORF for a protein of unknown function on the
CC   opposite strand. The corresponding LTR is ATLANTYS-LTR_OS.
CC   gag-pol:
CC   MEFKVRVHGVQGDGAQGLQGGNLNQNSDAAQDFFNNFQDRVDYAVHHALINQSGVLVNTLSNMM
CC   KSIADGSIAEHQAAGPVYLQGGVFPNYRPLITDVQPSIQAVPPVAPSAQPTAPASTPLPAPSAL
CC   APGQLVNPRLLMREQPQHSGQVVNRLTQDQVAAMFLPPQPTVDPIQQQPIQQTPPIQQVVQPIQ
CC   QQVVQPVQQTPPRQQPLQPIQQTPLRQQIYGQFEPMQQQSQGAAQQRPWADVIADVMREQFGLK
CC   PKETGSLYRQPYPEWFERVPLPNRFKVPDFSKFSGQDAIKQRHDEPVHEYIQRFREMRNKCFSL
CC   SLTDAQLADLAFQGMIAPIREKFSSEDFDSLSHLIQKVTLHEHRSAEARKXSKKVNHVCPYMYG
CC   SDDDEDDSEIAAAEWVRSKKVIPCQWVKSSGKEEKYDFDITKADKIFDLLLREKQIQLPAGHTI
CC   PSAEELGKKRYCKWHNSGSHSTNDCKVFRQQIQVAIEGGKIKFDDSKKPMKVDGNPFPVNMVHT
CC   AGQTADRGRARGFQVNSAKIINKYQRKYDKQQEKHYEEDDDGFDPHWGSEFGIDQADVDEVEEE
CC   SAKLVLSPEQAVFEKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGXAVNLMPYATFRKLGRNA
CC   EDLIKTNMVLKDFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIP
CC   STMHQCLIQWQGDKIEIVPADSQLKMENPSYYFEGVVEGSNVYTKDTVDDLDDKQGQGFMSADD
CC   LEEIDIGPGDRPRPTFISKNLSPEFRTKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLPIKPG
CC   VRPHQQPPRRCKADMLEPVXAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFRDLN
CC   KATPKDEYPMPVADQLVDAASGNKILSFMDGNAGYNQIFMAEEDIHKTAFRCPGAIGLFEWVVM
CC   TFGLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRKYGLKMNP
CC   TKCAFGVSAGQFLGFLVHERGIEVTQRSVNAIKKIQPPENKTELQEMIGKINFVRRFISNLSGR
CC   GACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADAIEIMGDSLLGIFGRQCWRIVSDIIRG
CC   VKIVRSLEQFSERRRRL.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ATLANTYS-I_OS2p"
FT                 /translation="MKVVNRPSVTEAEFPRLEPIVEDDGEERTHRRCMSYG
FT                 EYASTPTDAGAKLSAELLKDWFCSFYEGFQKDARVWPHQGTSRCRQEKENQ
FT                 IIGCEYLGSSSKEKDQVKKTKPTDDLPALDPSIEQALDEEEIEDDVDQAAA
FT                 EPPPPPSPPVQQSSSDQTPSAVGSHHIEEEEQPAAPAIPPHVHKQVYKEEL
FT                 GSIHDKPSDKTTMLRPTEYAIAEDNQKFSA"
XX
SQ   Sequence 10724 BP; 2957 A; 2002 C; 2738 G; 2985 T; 42 other;
     cgcttttggc acgcccggtg ggaccgataa gaagtcagcc aacaattctt cctcatggcc        60
     gagaaaccac caccatcacc atcctcggct agcccaggct ctgttaaaga aaagatccag       120
     aagttgggat tgactgacgt caatgaagga aacgtcgtgc ccatcgatcc agagaaattc       180
     acacctgagc agaagaaaga ttttgaagca atgttgcagc aagcacggga tcagttcttg       240
     aactcattca tgcagacccg caagggaaca cttgttcaga agtataaart aaaggtagtt       300
     gctgatgatc ctgggaccag ttcttctaaa gatggagaag ggaaacaagc tccagatggc       360
     tcggctcaac cgagtgacaa aggtgctacc gacggttctc taggaaatca aggtgacaay       420
     tctcaaggag tccatggagt tcaaggtgag ggtgcatgga gttcaaggtg atggtgctca       480
     ggggttgcaa ggaggaaatc ttaatcagaa tagtgatgcg gcacaagatt ttttcaataa       540
     cttccaagat cgggttgact atgctgtgca tcatgctttg atcaatcagt ctggggtgtt       600
     agtcaatacc ttatcaaaca tgatgaagtc aatagccgat ggttcaatag ctgagcatca       660
     ggctgcaggc ccagtttatt tgcaaggagg tgtctttcca aattatcggc ctttgatcac       720
     cgatgttcag ccatctattc aggcagttcc ccccgttgca ccatcagctc agccgacggc       780
     gccggcatcg actcccttac ctgctccatc agcattggca ccaggccagc tggtgaaccc       840
     tcggttgtta atgagagagc agccacagca tagtgggcag gttgtgaatc ggctgacgca       900
     agatcaggtt gctgccatgt ttctgccgcc tcaacctact gttgatccaa tacagcagca       960
     gccgattcag cagacacccc caattcagca ggttgtacaa ccaatccagc aacaggtcgt      1020
     gcaaccagtt cagcaaacgc caccaaggca gcagcctctg cagccgattc agcagacgcc      1080
     gttaagacag caaatcgttc agccgattca gcaccaaggy tcaatgagcg catcggccgg      1140
     gtttgcaacg cctggtggtc agcctgtaca acaattttta aatcaagttg tcccagaaca      1200
     cttggttcac caygtacagc cggatggcac agtaatgcct caagttgttc ctgagcattt      1260
     ggtrcgtaat attcagccga accttcataa ttaccaaggg ggcaacttga attatcaata      1320
     tcagcctcct tccccgcaag cccaatatca gccaggggga ttggctcaac ctcagtttgc      1380
     gtctcagtac ggtcagttcg agcccatgca acaacagtca caaggagcag ctcagcaacg      1440
     accgtgggcc gatgtgattg ctgatgtaat gagggaacag tttgggctta aaccaaaaga      1500
     gactggaagc ttgtatcggc agccttaccc tgagtggttt gagagagttc ctctccccaa      1560
     tcggttcaaa gttccagact tctccaaatt ttcgggacaa gatggtgtgt caacttatga      1620
     gcacattagc cgatttttag ctcagtgtgg tgaagcatcg gctgtrgacg ctctgagggt      1680
     taggttattc cggttatctt tgtctggatc ggcttttact tggttttctt ctttgccata      1740
     tgggtcgatc aatagttggg ccgatttgga gaagcaattc cacagctatt tctacagtgg      1800
     ggttcatgag atgaaattat ctgacttgac agcgattaag cagcggcatg atgaacctgt      1860
     gcacgagtat attcagagat tcagggagat gaggaacaaa tgcttcagct tgagtttaac      1920
     tgatgcccag ttagccgatt tggcctttca gggtatgatt gctccgatta gggagaaatt      1980
     ctcgtctgaa gactttgata gcttgtcaca tctgatacag aaggtaacct tgcatgagca      2040
     taggtctgcg gaagctagga aaarctctaa gaaggttaat catgtttgtc cttacatgta      2100
     tgggtcggat gatgatgagg atgattctga aatagctgca gccgaatggg tgaggagtaa      2160
     aaaggtcata ccatgccaat gggtaaagag ttctggaaaa gaggagaagt atgactttga      2220
     tattactaaa gctgacaaga tttttgattt gctactccga gagaagcaaa ttcaacttcc      2280
     tgctggtcat acaattccat cggctgagga attaggcaaa aagaggtatt gcaaatggca      2340
     taattctggg tctcattcta ctaacgattg caaggttttt agacagcaga ttcaggtggc      2400
     cattgaggga ggcaagatta agtttgatga ttccaaaaag ccgatgaagg tcgatggtaa      2460
     tccttttcct gttaatatgg tgcatacagc tggccaaaca gccgataggg gccgtgcaag      2520
     gggttttcag gtgaattcgg ctaagattat caacaaatat cagaggaagt atgacaagca      2580
     gcaggagaag cattatgaag aagacgatga tggttttgat cctcattggg gttgtgagtt      2640
     ctttagattc tgttggaatg aaggtatgag gttgccatct atcgaagact gtcctgggtg      2700
     cagtgatatt gccgagagct caagccgatc atataatagg ggcaatcggc taaggcagac      2760
     aagagttcct gttcatcaaa gattgggtcc agtgaatcaa gatcgtggcc aagaggacaa      2820
     tgaaatcagg aagactcaat ggtgtccttc tggtattttc acgaagaatc agaagagaag      2880
     ggttcaaaga ttgaggaaca gggagcgctt tcaggaggty gaacaagaaa ttaatcatcg      2940
     gctgaagaaa gcaaagccga ggcaggagtg gcgtgttaag aatcaggttc ctgtagccga      3000
     tgatgttgca gccgatgagg caaagaggtt ggcaaaaggg aagagtgttg tgacggcacc      3060
     agttaacatg gtytttacct tgccagccga attcgggatc gatcaagccg atgtcgacga      3120
     ggtggaagag gaatcggcta agttggttct gtcaccagaa caggcagtgt tcgagaagcc      3180
     tgaggggaca gagaatcggc atcttaaacc attgtatata aatggctatg tcaatgggaa      3240
     gccgatgtct aagatgatgg ttgatggtgg ggcygcggta aatttgatgc cttatgctac      3300
     gttcaggaag ttgggtagaa atgccgagga tctcatcaag acaaatatgg tgctcaaaga      3360
     ctttggtggc aatccatcgg aaaccaaagg tgttctaaat gtggagctga cagtcggcag      3420
     taagactatt cctaccacgt tttttgtcat cgatgggaag ggttcttaca gcttgttgct      3480
     tggaagggat tggattcacg ccaattgttg cattccttca actatgcatc aatgcttgat      3540
     tcagtggcaa ggcgacaaga tagagatcgt gccagccgac aggtcagtta atgttgccag      3600
     tgccgattta gctctttggg agatggatgg ccttgattgt ttatctggaa aagtttggga      3660
     tggagatttt ctaaaagtgt ccgattctga tatacagcca attgaagatg gagaacccaa      3720
     gctattattt tgagggcgtc gtggagggtt caaatgtcta caccaaggat acagtagatg      3780
     atctcgatga caagcaaggt caaggtttta tgtcggccga tgatttggaa gaaatagata      3840
     taggtccagg cgatcggcca aggccgacat ttattagtaa gaatttatct ccagaattta      3900
     gaaccaagct gatagagctc ttaaaagagt ttagagattg cttcgcttgg gagtattatg      3960
     agatgcctgg actcagccga tcgattgttg aacatcggct acctatcaaa ccaggggtta      4020
     ggccacacca gcaacctccg aggagatgca aagccgatat gcttgaacct gtcaargctg      4080
     agattaaacg attatatgat gctggtttta ttcgtccttg ccgatatgct gagtgggttt      4140
     ctagtatagt tcctgttatc aagaagaacg gcaaggtcag ggtgtgcatt gattttcgag      4200
     atttgaataa agctacaccg aaagatgaat atccaatgcc agtagccgat cagctggttg      4260
     atgctgcgtc agggaacaaa attttgagtt ttatggatgg aaacgcagga tataatcaaa      4320
     tttttatggc tgaagaagat atccataaga cagcttttag atgtcctggt gcaatcggct      4380
     tatttgaatg ggttgtcatg actttcggct tgaagagtgc tggagctaca tatcaaagag      4440
     ccatgaatta tatatatcat gatctaatcg gctggttggt tgaagtctat attgatgatg      4500
     tggttgttaa gtctaaagaa atagaggacc acatagccga tttgaggaag gttttcgaga      4560
     gaaccagaaa atatggcttg aagatgaatc cgacaaaatg tgcttttggt gtatcggctg      4620
     gccagttttt gggatttctt gttcatgaga gggggattga ggtaactcaa aggagtgtta      4680
     atgcgatcaa gaagattcag cctccggaga acaagacaga attacaagag atgatcggca      4740
     agataaattt tgttagaagg tttatttcta atttgtctgg aaggttagaa ccttttacac      4800
     cattgttgag attgaaagcc gatcagcagt ttacttgggg ggcagagcag caaaaggctt      4860
     tggataatat taaggaatat cttagctctc ctcctgtttt gattcctcca cagaaaggaa      4920
     taccttttag rttatattta tcggccggtg agaagtcaat cggctcagtc ttgattcagg      4980
     agttggaagg aaaagaacga gttgtatttt atctcagtcg tcggctcttg gatgcagaaa      5040
     ctagatattc ccctgtggag aagttatgct tgtgtttata tttttcatgt acaaggttga      5100
     ggcattatct actgtccaat gagtgtactg ttatatgcaa ggccgacgtt gtcaaataca      5160
     tgttatcggc tccaatattg aaaggaaggg ttggaaagtg gatattttcc ttaactgagt      5220
     ttgatcttcg gtatgagtca ccgaaggcga ttaagggaca agctatagcc gattttattg      5280
     tggaacatcg tgatgattca atcggctcgg ttgaaatagt gccatggact ttattctttg      5340
     atggatcggt gtgtactcat ggttgtggta tcggcttagt tataatttcc cctagggggg      5400
     catgtttcga gtttgcttat actattaaac cttatgcgac taataatcaa gctgagtatg      5460
     aggcagtgct caaagggttg caattactca aggaagttga agccgatgct attgaaatca      5520
     tgggggattc tttgctggta atcagtcaat tggcaggaga atatgaatgc aagaatgata      5580
     cattratggt ttataatgag aagtgccaag aactgatgaa ggartttcgg ctggttactt      5640
     taaagcatgt atctcgagaa caaaatattg aagctaatga tttggcccaa ggggcatcgg      5700
     ggtataagcc gatgatcaaa gatgttaagg ttgaaattgc agcaatgaca gccgatgatt      5760
     ggaggtatga tgtgcatcaa tatttacata atccatctca atcggcttct aggaaattaa      5820
     gatataaggc gttgaagtat actctattgg atgatgagct ttattatcgg acgattgatg      5880
     gagtgttact taagtgtttg agtgccgatc aggctaaagt tgcaatcggc gaagttcatg      5940
     aaggaatttg tggtactcat caatcggctc ataagatgaa gtggttactt cggcgtgcag      6000
     ggtatttttg gccgacaatg ctggaggatt gtttcagata ttataagggg tgtcaagatt      6060
     gtcagaagtt tggagcaatt cagcgagcgc cggcgtcggc tatgaatcct attattaarc      6120
     catggccatt yagaggttgg ggaattgata tgatcggtat gataaaccca ccatcgagta      6180
     aaggacataa gtttatattg gtggcgactg attatttcac caagtgggta gaggcgattc      6240
     ctttgaagaa agttgattct ggggatgcaa ttcaatttgt tcaagaacat ataatctacc      6300
     gatttggtat tcctcaaact attacaactg atcaaggttc aatcttcgtg tccgatgagt      6360
     ttgttcagtt tgccgatagc atgggtatca aattgttgaa ttcttcacca tattatgcac      6420
     aagctaatgg gcaggccgag gcatctaaca aaagtttgat caaattgatt aagcggaaaa      6480
     tttctgatta tcctcggcaa tggcatactc ggttggccga agcattgtgg tcttatcgga      6540
     tggcttgtca tggatcgatc caagttcctc cttataaact tgtttatgga catgaggctg      6600
     ttttgccatg ggaagttaga atcggctcta gaagaacrga rttgcaaaac gatttaacag      6660
     ccgatgagta ttataacctt atggccgatg agagggagga tttggttcag tcacgattgc      6720
     gagcccttgc aaaggttacc aaggataagg aacgtgttgc tcggcattat aataagaaag      6780
     tggtacctaa agatttttcg gaaggtgaac ttgtatggaa gttgattttg ccgattggwa      6840
     ctcgtgatag yaaattcggc aagtggtcgc cgaattggga aggaccgttc caaatttata      6900
     aggttgtgtc taaaggagca tatatgttgc aagggcttga tggtgaagtt tatggacgag      6960
     cgctcaatgg caaatacttg aagaaatatt acccaagtgt ttgggttaac gcatgatcgg      7020
     ctagtgttgc cgatgcatga cagccgatgt gtttacatcg ccttgagatg gccgatattg      7080
     ttatatcgcc cttagttgtt tttcatattg taatcggttg tggtttgccg atgtacaatg      7140
     gccgatattg ttatatcgcc cttagttgtt ttataatttt atcaatgctt ttgacattgt      7200
     aaaattaggg gggcacatat atatacaaaa tgcaaatttt gcaaatttag aagttatatt      7260
     aatcggcaca aaggattgtc aagacagtaa agtattagag tatcttagcc gattacaaaa      7320
     atttctaagt cctattacac aaaagttatt gagacaagta ttgctggata gccgaaatag      7380
     ccctttgcct aatttgttct acttcttcaa tggcttgggc atcttgagca tcagttccag      7440
     ggatgacttt cagggacttg gtcagrtcag caacattctt gatagccgat ttgagccttg      7500
     ctttttgttc ttcgatagat tttgggagat cggctagctt tttgtgctcc atatccagct      7560
     cagcattgca ttcttcaagt tgtgccaaga gctcaatctt gcgagcttcg agccgatcaa      7620
     tattggattt gatcggacct tcagatagct gatcaagttt ggmtttttct tcatgcacaa      7680
     gctgccgatt ggcttggatt gtggcttcaa tctccttgcg ctcacggcgt tcggctagtc      7740
     ttagcttggc tttttccagc ttgaattgat gttgctcaag ataaacggct ggagttagga      7800
     catcggctaa ctcatctggr attagagctt gaacttcatg cagccgtgtc ctaattgatc      7860
     cacagtcaac caccaagcta tctagagatg akgcttctag ccgatgagag atatcttcaa      7920
     gtgttttctt cacatcatca gataagggag ctagagcttt gcttgaagta tcttcttctg      7980
     cctcatcaag ataatctttg atgtcaaaag agaagagatc ggctaraacc tgcagagaca      8040
     atttcagaaa ggttaagagy taagtaaata tagccgatct aaattsttgm gwcaaaggaa      8100
     aacttactgg gatagcagga gcagctggtt gttcttcttc ctcaatatga tgactcccca      8160
     cagccgatgg agtttggtca cttgatgatt gttgtacagg aggagaagga ggaggaggag      8220
     gctgtaaaga gacaagtgtt agacaaaatc ggctgaaata attaataaaa attaagaata      8280
     tcttactggt ggagctggtt tgagaattgt tgctgccgat ttcttcttca cagcagtttt      8340
     cttcttctgc aactacaaaa tctatgagta atcggctgaa aaaaaaataa ttataaaagg      8400
     gatcaaagag agatgcttac tcttgaaaag tgagcggggg cagaaggagt tggaggtgtt      8460
     tgcttgggyg aagccgatgg tgttctttct gtatcactta cttcggctgc agcctgatca      8520
     acatcatctt caatttcttc ttcatccaga gcttgttcaa tggatggatc caaggcaggc      8580
     agatcatcag ttggcttggt tttcttgact tggtcttttt ctttggagct agagccaagg      8640
     tactcacagc cgatgatctg gttttccttt tcttgcctgc atcggctggt tccctgatga      8700
     ggccttgaag gagagttgaa gtcttggggg catgatagcc gatgacaggg ggagatagtc      8760
     cacctccatt aggaatcaga cctggggcat attcaatgtt cctgccactg ttgctttgat      8820
     gwggagggga ggattctgtt gtctgcaaaa caggagaaag attagtcaag aatgaatcgg      8880
     ctaaccagtt tataaattta gtgatgacaa agtttacctg gggtatgaca tcagggaata      8940
     gatctgtcat atacattgaa gccgattgat gaaatagatg cagcttccat tcaccccacc      9000
     atctgtcaaa gtttttgctc ctgaatcctg ccaactcaat attgtcaatg ctgcctagag      9060
     ggggtccttg gaggttaagc agccgatcca tcattagagt tgatgaaatt tctcctcggc      9120
     attggatctt gtcggcaaag aataagccga ttgggagttg gcccaatcca agttgtctag      9180
     ctgarctcat tgggtgataa aaytcgtagg agacttggat gtttcttcct tgatgaatgc      9240
     cgacaggaag gatgcatggg ctgattgcag ctgtgaagac ttccctggat ttttgatatc      9300
     tttcatgatt gatgtcttca aatctgaagt ctgatggrag ttcaaggtct gctgagtctt      9360
     cataaagaaa ccaaactcga gcatctttct gaaagccttc ataaaagctg cagaaccaat      9420
     ctttgagcag ctcagccgat agctttgctc cagcatcggt tggtgtggat gcatattctc      9480
     catatgacat gcatctgcga tgagtgcgtt cttctccatc atcttctaca atcggctcta      9540
     gccttgggaa ttcagcttct gttacagatg gccgattgac aactttcatg actatcaggt      9600
     ttaaccaggt ttgcagcagc caccatggtc cacctgctcc aactactgag ccgacggcta      9660
     tcttagccga tgcattgttc aacatttggt atagatagcc gagaaggatt ttgcccaaag      9720
     gaaattgttt ctttgattct aaggcttcgg ctacaaattg ccaattggtt gtagggccac      9780
     agctggatcc acagaagaga aacttttcta gccacattag caagaaagct acatgctctc      9840
     gaggagtgac aggcccttgg cccatatatg ccgctacata rccagaccaa cctcctatgc      9900
     ttttggtctt gaagtcaaat tggttcttgg tgttcatact catagggtta gccgatgaag      9960
     ttacatctaa tccagtratc atgatgatgt cgatcaaagt tggagtcatc ggcccttggt     10020
     tgaacaagaa ggcattgatg gtgttggacc agaaataggt ggcrgcwgcc atcagaggtt     10080
     catccttagc agaattggct atggtgaggg caagtgcttg gccgattcca atttcatccc     10140
     agtgaacttt cttactagcc gatacgcgtt tgtaccatgt ggtccagcty ttctcagggt     10200
     agtttctcga gagatggcca agacttgaag gtattcttcc agtgacccag gttagggttg     10260
     gctagtctaa aggggatcct gttggtttca ccaatgatga aatcagtggg gtcaagattg     10320
     ccgattgggc caagaaagta gtggttttcg tgcgataggc tgggaatcgc aactaggttg     10380
     gaaaggtgct acaaatccaa aggaatcgag aagaagaaaa caaatgagaa agagaaaatc     10440
     gatctgatgc taagaaargg gatctagccg atgagaactt acctcagcgt actcggcyga     10500
     tggcgcagca gatgggctgg tggaagacga catcgccgca ggcggagatc tggccggaga     10560
     tgaagtcgcc tgggratcgc ctttgcgtcg gaggaatcgc cggagagaga gaggacaaag     10620
     tttcgcttga gcggtgaaaa cggaagtcac ggtgtgagat ttctcgaggg taacggttag     10680
     tatttaaagc actagaataa cggtcggaaa acggcaagtg cgaa                      10724
//
ID   CLOUD       repbase; DNA   ; ORY   ; 734 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   06-NOV-2002 (Rel. 7.1, Last updated, Version 3)
XX
DE   Rice Mutator-like non-autonomous DNA transposon CLOUD.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; CLOUD;
KW   Mutator-like; target site.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-734
RA   Jiang N., Wessler R.S.;
RT   "CLOUD: a Mutator-like non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Repbase Reports 2(7), 8-8 (2002).
XX
CC   [1] (Consensus)
XX
CC   9bp target site duplications.
XX
SQ   Sequence 734 BP; 230 A; 139 C; 130 G; 235 T; 0 other;
     gagtaaagtc catcaccagt ccctaaactt gtacccctgt gtcatcccgg tccctaaact        60
     cgcaaatcga ccgttcagat cctcaaactt gttcgactgt atcatcccgc tccctaaact       120
     tgcagatcac tcgtttaaat cctccaactt gttcagctgt atcacccagt ccctaaactt       180
     ggatttgaat atcatctgtg tcaaatagga cggtgtaaag actttatatt taaaaataat       240
     tcataacttt tatgtgaact ctaataaaga caaactttat atcaaacttg tagccctcga       300
     cacgatctac aactttgtag ttgaattttt tttattttaa gtcatttttg ttccaaaatg       360
     taattttaaa attaaaattt caaaatctat aaatatgcaa caatattttg ggaccctaaa       420
     cagttttaat tcaaaaaatt ttcaactaca aagttgtagg tcgcgtcgag ggctacaatt       480
     ttgatataaa gtttgtcttc attagagttc acatgaaaaa gttatgaatt attttttgat       540
     ataaagtttt tagaccgtcc tgtttaggga ctggggtgat acaactgaac aagttggagg       600
     acctaaacga gtgatctgta aggaccggga tgacacagtc gaataagttt gaggacctga       660
     acgatcgatt tgcgagttta gggaccggga tgatacaacg gtacaagttt agggaccggt       720
     gatggacttt actc                                                         734
//
ID   ENSPM4_OS   repbase; DNA   ; ORY   ; 11610 BP.
XX
AC   .
XX
DT   26-MAY-2005 (Rel. 10.05, Created)
DT   27-MAY-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   En/Spm like DNA transposon from rice: a consensus.
XX
KW   EnSpm; DNA transposon; Interspersed Repeat; ENSPM4_OS.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-11610
RA   Jurka J.;
RT   "EnSpm like DNA transposon from Oryza sativa : consensus
RT   sequence.";
RL   Repbase Reports 5(5), 114-114 (2005).
XX
CC   [1] (Consensus)
XX
CC   Contains imperfect terminal repeats. It is distantly related
CC   to ENSPM2 and ENSPM3 from Oryza sativa. Individual copies up to
CC   99% identical to consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           591..3881
FT                 /product="ENSPM4_OS_1p"
FT                 /translation="FQMDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRM
FT                 SMHMLCPCRDCKNEQMIEDKDEVHAHLIMNGFMKKYTCWTKHGEQEAPDVA
FT                 AEEVLDQDVENTAAAREGMFVPSPLGGETIDLDTQCLSTMLHDIEDAEDND
FT                 RDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMKLKASNGWSDKSFTEL
FT                 LELLKDLLPEGNNLPQTTYEAKQVLCPLGLEVRRIHACPNDCILYYKEYAD
FT                 LDVCPICGASRYKRAKSEGEGSKSKRGGPAKVVWYLPIAERMKRMFANKEQ
FT                 AKLVRWHAEERKVDTMLRHPADSVQWRTIDRIYQEFSNDPRNMRFAMCTDG
FT                 INPFGDLSSRHSTWPVLLVNYNLPPWLCFKRKYIMLAMLIQGPRQPGNDID
FT                 VFLEPIIDDFERLWNEGTRTWDAYAQEYFNLHAMLFCTINDYPALGNLSGQ
FT                 TVKGKWACSECMEETRSKWLKHSHKTVYMGHRRFLPRYHPYRNMRKNFNGH
FT                 RDTAGPPTELTGTEVHNLVMGITNEFGKKRKVGKRKEKSTSKEKTEEHVEK
FT                 QKTKERSMWKKKSIFWRLPYWKDLEVRHCIDLMHVEKNVCESLMGLLLNPG
FT                 TTKDGLNARRDLEDMGVRSELHPITTESGRVYLPPACYTLSKEEKIDLLTC
FT                 LSGIKVPSGYSSRISRLVSLQDLKLVGMKSHDCHVLITQLLPVAIRNILPP
FT                 KVRHTIQRLCSFFHAIGQKIIDPEGLDELQAELVRTLCHLEMYFPPTFFDI
FT                 MEHLPVHLVRQTKCCGPAFMTQMYPCERYLGILKGYVRNRSHPEGSIIESY
FT                 TTEEAIEFCVDYMSETSSIGLPRSHHEGRLDGVGTVGRKTIRLDRKVYDKA
FT                 HFTVLQHMTEVVPYVDEHLAVIRQENPGRSESWVRNKHMSSFNEWLKNRIA
FT                 RLQNLPSETLQWLSQGPEWSATTWQGYDINGYTFHTVKQDSKCTVQNSGLR
FT                 IEAASDGGRRDQYYGRVEQILELDYLKFKVPLFRCRWVDLRNVKVDNEGFT
FT                 TVNLANNAYKDEPFVLAKQVVQVFYIVDPCNKKLHVVREGKRRIVGLDNIA
FT                 DEDDYNQHVHGIGQEIPLEEEEEEDEVQYARVDHEEGLFL"
FT   CDS           join(7630..8466,8470..9846)
FT                 /product="ENSPM4_OS_2p"
FT                 /translation="QILPSVCAAELPQEQHTSMSGGTSASRSSRNPRSQNI
FT                 WPTTVQVIREVDASGRPTAPRTVIGRWSNCCGIAARENFGILHKDIGKVTE
FT                 AEKERAWTAMEKWFTFPAEAKDRLKRKAFQKMGKAWKNWKSKLFTEFVNPP
FT                 GNHTPFDEYPQITEAVWEEFCSLKTTQEFRESSEAHRVLQQRNEHPHRLGT
FT                 AGYIGKEAIWAQEDAAAAAANVPAPFSDIPEQRARNWARARGKVNPDGSVT
FT                 FENKSDAVVYQELVSSLLNLTNFRSYKVQVRINDYLLFLGLVAEQASQSEV
FT                 ESAPKRREDDILTKALGTKEHPGRTRGIGSDVPWKHGLPQYSSQYRKRKVS
FT                 KEERDARLKAELKVEVIQELEASMNARVEERVNKVLADMNIPRVTTPAVQP
FT                 TPRVQHDASPSQHRSSCASTEVPAPGLPIAPLAAVDHIEVIVVIRSISNKR
FT                 HLHIPILNSNFHLMQGAAQCVLLARVHPTFAPEVAEGMAFKPSVTDKVHGA
FT                 DLLAGYAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVV
FT                 KMTPRPSRPTELTPPKSKLSIEAPRGPALSVPHSPGGADMDLADIAQSLAP
FT                 IKTTRKADSSPPLVKGQKRERGKGKVGELAPEPKRGKAATSMPVSKSGKVV
FT                 RAPAQFELGMPLVEDNVLAVMGIACRELHKQYMELSNAKRKMRESSIVGHH
FT                 DHQPFLSSPAYITIGFDDLFDLFRIRKLDTGLLKCYSL"
XX
SQ   Sequence 11610 BP; 3090 A; 2632 C; 2706 G; 3176 T; 6 other;
     tcactacgcc agatcctcac acctctgacg ggatacctgt gacgggcaaa cgaattggtc        60
     agtagtgacc attacctttg acgggttata cgggatgccg tcaccggtga ggcatctggc       120
     cgcggcccgt cacaggtatc ccctcacctg tgacgggccg aaaggaaaac ccgtcagagg       180
     tataccagtg acgagttttt cttccaaccc gtcactggta tcccctcacc tgtgacgggc       240
     cgatacatta gaagccgtca gaggtgatgg gccgccacct gtgacggctt tcatttctgg       300
     cccgtcacag gtgagcggat accagtgacg ggccgttgaa tagaagcccg tcaaaggtat       360
     gagcaatacc tttgacgggc tttttttatc taacccgttt gaggtgtgtt gggtctataa       420
     atacccccca aactgccaac tgctttccat cccgaccatt gtactgttca caaatcggtt       480
     gggagggcaa ggggggcgat tttttgctaa aattcaaggt aaaaaacaca ttattctcca       540
     ttcattctca acatatcgat catcatttat ttttcttcgt atgttgttga tttcagatgg       600
     atcgtagatg gatgtactat gcgcatcgtt cgtctaccga gtatagagag ggggtcactg       660
     aatttgtcac atttgcggat aatgacagaa aaagtaggat gagcatgcac atgttgtgcc       720
     catgtaggga ctgtaagaat gaacagatga tcgaagacaa ggatgaagtg catgctcatt       780
     tgataatgaa tggattcatg aagaaatata cctgctggac caagcatgga gagcaagagg       840
     cgcctgatgt cgcagctgaa gaagtgttgg atcaggatgt agagaacacc gccgcagctc       900
     gagaaggcat gttcgtacct tctcctttag gtggagagac catagatttg gacactcaat       960
     gtctatctac aatgttgcat gacattgaag acgcagagga caacgacaga gattatgaga      1020
     agtttagtaa gttggtggaa gattgccaga tgccgttgta tgatggatgc aagtcgaagc      1080
     acagcaagtt gtcatgcgtg ttggaactca tgaagcttaa ggctagtaat ggctggtcgg      1140
     acaagagttt tacagaactc cttgagctgt taaaggatct gttgccagag gggaacaatt      1200
     tacctcagac gacatatgaa gcgaagcaag tattatgtcc gttgggcctg gaggtcagaa      1260
     gaattcatgc atgtccgaac gactgcattt tgtattacaa ggaatacgct gacttggatg      1320
     tctgccctat ctgtggggca tcaagataca aacgagcaaa gagtgaaggt gaaggaagta      1380
     agtcaaagag gggaggccca gcaaaggtgg tgtggtatct cccaattgcg gagcgcatga      1440
     agagaatgtt tgcgaacaag gaacaagcta agcttgtgcg ctggcatgcc gaagaacgga      1500
     aagtcgatac tatgctgagg cacccagcag attcagtaca gtggaggaca atcgatagga      1560
     tttaccagga attctcaaat gacccaagaa acatgcgttt cgcaatgtgt acggacggca      1620
     ttaatccttt tggtgatttg agcagtcgtc acagtacatg gccagttctg cttgttaact      1680
     ataaccttcc tccctggttg tgtttcaaaa gaaagtacat tatgcttgcc atgctcattc      1740
     aaggaccgag acaacctggc aacgatatcg atgtgttcct tgaaccgata atcgatgact      1800
     tcgaaaggct atggaatgag ggcacacgaa catgggacgc atatgcacaa gagtatttca      1860
     acctccatgc gatgctgttt tgtaccatca acgattatcc ggcccttggc aacctttctg      1920
     gccaaactgt gaaagggaaa tgggcgtgtt cggagtgtat ggaggaaaca agaagcaaat      1980
     ggttgaagca ttcacacaag acggtctaca tgggtcacag gagatttctc ccaaggtatc      2040
     acccgtatag gaatatgaga aagaatttca atggacacag agatacagcc ggacccccga      2100
     cagagctaac agggacagag gtgcacaact tagtgatggg aataaccaac gagtttggaa      2160
     aaaagaggaa agttggaaag cgaaaagaga agagcacatc gaaggaaaaa acagaggagc      2220
     atgtggaaaa acaaaagaca aaagagagga gcatgtggaa aaagaagtca atattctgga      2280
     gactaccata ctggaaggat cttgaagttc gccactgcat agatttgatg catgtcgaga      2340
     agaatgtatg cgagagttta atgggattac tgcttaaccc aggtactaca aaggatggtc      2400
     tcaacgcccg acgagatctg gaagatatgg gtgttcggtc ggagctacat cccataacca      2460
     cggaatccgg cagggtttac cttcctccag cctgctacac tctctcgaaa gaagagaaga      2520
     ttgatttgct aacatgtttg agtggtataa aggttccatc tggttactca tcaagaatca      2580
     gtaggctcgt ttcactgcaa gatcttaagt tggttggaat gaagtcgcat gattgccacg      2640
     ttcttatcac acagctgttg cccgttgcaa taaggaatat tttgcctcct aaggtgcgac      2700
     acacgatcca gcggttgtgt tccttcttcc atgcaatcgg ccagaagatc attgatcccg      2760
     agggactaga tgaactacag gcagaacttg tgagaaccct atgtcatctt gagatgtact      2820
     ttcctccaac tttctttgac ataatggaac atcttccggt gcaccttgtg aggcaaacaa      2880
     agtgctgtgg tccagcattc atgacgcaga tgtatccttg cgaaaggtac ctggggatcc      2940
     ttaagggtta tgtacggaac cgttcacacc ccgaggggag tatcatcgag agttacacca      3000
     ccgaagaggc catcgaattt tgtgtggact acatgtcaga aacatcttca attggattac      3060
     cacgatctca tcacgaaggg aggcttgacg gtgttggtac tgttggaaga aagactatta      3120
     ggttggatcg gaaggtgtac gataaagctc atttcacggt actacagcat atgactgagg      3180
     tggtgccgta cgttgacgaa caccttgcag ttatccgaca agagaaccca ggccgatcag      3240
     agagttgggt caggaataag cacatgtctt ctttcaacga gtggctgaag aaccgaattg      3300
     ccaggttgca gaacttgcct agtgaaacac ttcagtggtt gtcacagggt cctgaatgga      3360
     gtgccaccac ctggcaagga tatgacataa atggatacac ctttcacacg gtcaagcaag      3420
     acagcaaatg cacagtgcag aacagtgggt tacgcatcga ggctgctagt gacggtggtc      3480
     gtcgtgatca atactatggt agagttgagc aaatattgga gctagattac ttgaagttca      3540
     aagtcccgtt gtttcgttgt cgatgggtcg atcttcgcaa tgtaaaagtt gacaatgaag      3600
     gtttcaccac tgtcaacttg gctaacaacg cgtacaagga tgaaccgttc gttctcgcca      3660
     aacaagttgt tcaagtgttc tacatagttg acccgtgtaa caagaaacta catgttgttc      3720
     gtgaagggaa aaggagaatt gttggattgg acaatattgc agacgaggat gattacaacc      3780
     agcacgtcca cggcataggt caagaaatac ctctagaaga ggaggaggaa gaagatgaag      3840
     ttcaatatgc acgtgtcgac catgaggaag gattattttt gtaatttatg tacgtagttt      3900
     atgtctacat gtctgttatc tgtatgactc taatatgttc gcaatgatca atagtatatt      3960
     gcttatgaaa tagtcaaata aaataattaa gtgaagcacc cactagaagt gaaataaaat      4020
     aattaagcaa gtataagcat tggaaataat ataattaaag tagtataata atgaagtgca      4080
     attactactg ttagtgaaat aaaataatta agtataaaaa aatatgtagt gtatgtgaaa      4140
     atatgttaag gaaaataaaa gaactaagtg aaataaaata aaataaaatt gctctaggca      4200
     aactcacctg tgacgggctc tatctgtagg gccgtcacag gtgacctcac ctgtgacggc      4260
     ccagagtgtt gggcccgtca caggtggtct tacctgtgac ggctccacgg ttggcgcccg      4320
     tcacaggtga ggccacctgt gacggccaca tagttggagc ccgtcacagg tgagtttgac      4380
     tagggttgac ctagggttgg acatcttcta gatcgatcca gatccggcgc ccactctcac      4440
     tcactcactc tctcgaccgc cgcctcgcct ctctcgacct ctctgccgcc ctctacgccc      4500
     tcctctccac cgccgcctcg acctctccac cgacgccgtc ctgcaccacc gccgccgcac      4560
     tcactctctc gaccgccgcc atccatctcc gccgccatct ccaccgccgc cgcctcgacc      4620
     tctccgccgc catctccgcc gccatccaga ccctcctcgc cgccgccctc tctgccgcca      4680
     tctccgccct ctccgccgcc ctcgccgcct ccctctccac cgccgcctcc tcactcactc      4740
     tctcgaccgc cgccgtcctc tccaccgcca tctccaccgt cgccgcctca acctctcctc      4800
     cgccctctcc gccgccatct ccgctgccct ctctgccgcc atctccgccg tcctctccac      4860
     cgccctctcc gccgccgcct ccaccgccgc cctcgccgcc ggtcgtcctc tccgccgtcc      4920
     gtccatcgac ttccccgacc tccccgaccc tgacctcccc gacgccggga tccccgacca      4980
     ccgccgaccg cctcgacctc ttcgccactg cctctccgcc gccgccacca ggatccagga      5040
     cgactacggc ctgcgccgcc gtctccaagt acgccgcttc tccaagtatg ccgccaccct      5100
     cccccattcc tccttttttc cgatggatga attgcattgt ttagatgaat gaaatgtgat      5160
     ttgttgtttc gattattggt gctgctgtat agatgaatta aatgtgattt gttgtctgtg      5220
     gatgttttgg atgaatgtag gggctagatt ttatatacat gattttggtg cagtgaatct      5280
     tagcatcaat agaggatctt agcatgaatt tttaatgcat tttgttttct ataattcttt      5340
     gataattaag gacctttatt aggtttaggg tttgaaattt agttcaaatg gaagaattga      5400
     twgattggcc gcagatttaa tgtagttccg aggttatcaa accatcacag aatacaaaat      5460
     gcatggggaa ttttggtgga ttggycagtg tagtccatgg acggaaccga cctagacacc      5520
     aaaattctcc atgcattttg ttttctgtca ttctttgatg attaaggaag ctttgcagat      5580
     tatctaaact tgttgattta tatacccttt ttgtctatga ataggtgaat tgcatgaatt      5640
     gttgtttata tacatgattt atataccctt gctgctgctg ccacataaat gattgtgggc      5700
     tgttttatta tctagacttg cttgaattga atggatgaat tgctgtttac atgaagttag      5760
     tagtactgtc tcctttttta tctacacccc tgctactgcc cctacacttg ttcacttgtt      5820
     ccttattaaa tggccagtgt agagtggtta tatacctcta cacttgttct ttttttatgc      5880
     ataagaacag attttgtgca cttgctcttt ttttatgcat aagaacagat tttctgcayt      5940
     tgctcttttc ttctggattg ataaatggcc agtgatgaat tgctcaataa gaacagatta      6000
     tctacacttg ttcatttttt tatctattct tctttttgcc cctgttgtgg ctcaataagt      6060
     aatgaattgc tcaataagaa tagtttatct gtacccttat tgtgggctgt tttttaaatt      6120
     tgcatgattg actcagtggt tatatacctc tacacttgtt ctttatggat aagaacagat      6180
     tatctacact tgttcttttt ttatgcataa gaacagattt tctgcacttg ctcttttgat      6240
     gttatgattt cctcttttta tcccttcatg caaatgaata taattgatgc atatttctga      6300
     gcaaaactga ggccatatct ttcatagtat accccgtatt acatgatttt ggtgcagtga      6360
     atcttgaatg tggatttaag tgcaactgct gctgtctatg tttgcccttg ctgtctatgt      6420
     ttgcccatgc tgctgcctat ggttgcaact gttagttaag tgcaacttga atgtggattt      6480
     aagtgccatt tggacatata accattcatg gagtgtgtac tgctatatat gttgctacac      6540
     ctattgaatt ttgtggactt gcatttatac tcctcctgct gctgttttat gtcaatcatg      6600
     caaattctgt acccttgctg ctgctgtttt ttaaatttgc agtgattgat tcagtggtta      6660
     tatacctcta cacttgttct ttttttatgc ataagaacag attttctgca cttgctcttt      6720
     tttttggatg cataagaaca gattttctgc acttgttcat ttttttatct acaataatat      6780
     atgcatgatt tatataccac tgctgttgtt gccccatgta cttcttgtta aatggccaag      6840
     gatgaattgc ttaataagaa cattctatct acacttgttc ttttctttat ggataagaac      6900
     agattatcta cacttgttga tttatatacc cttgctgtct atgtgaattt ccctctgctg      6960
     ttgctgttta tgtgaatttc taccctgctg ytgctgtttt atgtgaattt ccaccctgct      7020
     gttgctgttt atgtgaatct ccccttgctg ttgctgcccc tgtggcatat atacccctac      7080
     tgctgttgta tggccctgct actgctctta ttgctgctat tatatggcca tgctgttgct      7140
     actactctaa tttcctgcac ttgctctttt ccttatggat aagaacagat tatctacact      7200
     tgttcttttt tattgataag aacagatgaa ctacacttgt tctattttat ttgggttgct      7260
     tttttctcct agtagctgat ttcctctttt tatcccttca tgcaaatgat tgtaattgat      7320
     gcatatttct cagcaaaact gaggccatat ctttcatagt ataccccgta ttacattgga      7380
     tctaatgcta tttagtctaa tggtaggaaa tttataatct ttttcgcgaa agttaaacca      7440
     tgtcaacgcc cggcgcaaac ccgccctccc caacacctgc gaggatccag gaagaagcaa      7500
     acccagccac agaggcagtt gccgaaggtc atcccgcgac aacggcggtc caacaacccg      7560
     aaattcatgg taatttatag gataaatttt caccacatga ccacataaat tttagctagc      7620
     accccttagc aaatattgcc ttctgtttgt gctgcagaat tgccgcagga acaacatacg      7680
     tcgatgtcgg gcgggacaag tgcaagtagg tctagtagaa atccgcggtc acaaaatata      7740
     tggccgacca cagtgcaagt tataagagag gttgacgcta gtggtaggcc cacggcgccc      7800
     aggactgtca ttggaagatg gtctaactgc tgcgggatag cggcacgtga gaacttcggg      7860
     atcctccata aagatatcgg gaaggtcaca gaagccgaga aagagcgagc ttggacggca      7920
     atggagaaat ggttcacatt tccagccgaa gcaaaggata ggctcaagcg gaaggcattc      7980
     caaaagatgg gcaaagcttg gaagaattgg aagtcgaagc tcttcaccga gtttgtcaac      8040
     ccgcccggca atcatacgcc gttcgatgaa taccctcaaa taaccgaagc ggtgtgggag      8100
     gaattctgct ctctcaagac cacccaagag tttagggaat caagcgaggc acatcgcgta      8160
     ctgcaacagc ggaatgagca cccgcatcgg ctgggcaccg cagggtacat cggcaaggag      8220
     gcaatatggg cccaagaaga tgcagccgct gcagcagcga atgtccctgc cccgttttca      8280
     gacatccctg aacaaagagc tcgcaactgg gcgcgggcaa ggggtaaggt caacccggac      8340
     ggctctgtca catttgagaa caaaagtgat gccgtcgtct atcaggaact ggtgagttca      8400
     ctacttaacc taactaattt ccgttcgtat aaagtacaag ttcgtataaa cgactatctt      8460
     cttttctagt tgggcttggt tgctgaacaa gcttcacaaa gcgaggttga gtccgcgccg      8520
     aagaggcgcg aagatgacat cctcacaaag gcgctcggaa ccaaagaaca tcctggccga      8580
     actcggggaa ttggtagcga tgtgccctgg aagcatggac tccctcagta cagctcccaa      8640
     tacaggaaac ggaaagtctc caaggaagag agggacgctc gtttgaaggc cgaacttaag      8700
     gttgaggtca ttcaagaact agaagctagc atgaatgcaa gggtggaaga aagggttaac      8760
     aaggtgctcg ccgacatgaa tataccccga gtcacaacac ctgctgtgca accaactcct      8820
     cgtgtacaac acgacgcgag tccgtcacag cataggagta gttgtgcatc cacagaggtg      8880
     ccggcccctg gtctcccgat cgcaccacta gctgcagtgg accacatcga ggtaattgtt      8940
     gttatccgat ccatatctaa taaaagacat ttacacattc caatattaaa ttcaaacttt      9000
     caccttatgc agggcgcagc acagtgtgtc ctactagcga gagtccaccc aactttcgct      9060
     cctgaagtcg ctgagggcat ggctttcaag ccctcggtta cagacaaggt ccacggcgca      9120
     gacctgctag ctgggtatgc caaggtgtcc atcgatacag taaaggacac ctggtcaggc      9180
     tatccgctgc ccgtgccccc aaatgatgaa atcatgactt tgggcgatgc gcgcaagacg      9240
     ttcatacaat ggcccaaaga agacatagtt gtgaagatga ctcctcgtcc aagtcgaccg      9300
     acggagctta cacctcccaa gtctaagcta tcaattgagg ctccccgtgg accggcattg      9360
     tcagtacctc attctcccgg tggagctgat atggacttgg cagatatagc tcaaagcttg      9420
     gctccaataa agaccacaag aaaggccgat agctccccac cacttgtcaa gggccagaag      9480
     cgtgaacgcg gcaaggggaa ggtcggggag ttggcgccgg agccaaaaag gggcaaggct      9540
     gcgacgtcga tgccggtgag caaatcgggg aaggtcgtga gggcgccagc ccaatttgag      9600
     ctaggcatgc cattggtgga ggacaatgtg ttagctgtga tgggtattgc ttgccgagag      9660
     ctacataagc aatacatgga gctaagcaat gccaagcgga aaatgaggga gtcatccata      9720
     gttggacatc acgaccacca gccgttccta tcgtcgcctg cctatataac tataggcttt      9780
     gatgacctct tcgacctttt caggatccgg aagttggaca ctggtcttct aaaatgctac      9840
     tccttgtaag tgcatacctt ctatacttgt gatatgactg gactatatct cctaattaaa      9900
     ttagttctaa tacgtaaata ttttaaggtt gtgttggatc gagagtcgtc gccatggtaa      9960
     tcaggttggg ttccttgatc catccatggt gaatgaggtt aatttacgac agagcttcac     10020
     tgaggtggtt gactatgtca accggtgttt atgggcccat caagacaagg agtacatcat     10080
     gtgcgcacac aaccaagagt aagaggacaa tacccttcgt gtatattgtt tttgaagtta     10140
     aggttcttag tactaacgct acataaccac tgcgcaggcg acattggatt ctcctagtca     10200
     tcgtacctaa gtggagtagg gttacctacc ttaactccaa taagtccaaa gattatgatt     10260
     tcagtgaaat caccaaggcc ttaaatatgg cttggggccc atatgtggaa aagggtggta     10320
     ggcacaagga gggcaagaat gaactttatc atgacaccaa gtttgcatgc gcacaacaga     10380
     tcggagacca atgtggtttc cacgtgtgcc acaacatgtc aacacttcta agagaggtga     10440
     aagatttcga ccctgaggtt gttgctaatg gcgaataagc tcatttcaat atctacattg     10500
     ctattcaaaa cgtgctaatt aacctcttat ttattaaaca gaaaggtaga gctggcttca     10560
     agatctcacc catcaacccc cccgctatca gaggcgaatt gtgcgccttt attcttgcag     10620
     aaataatgaa caagaaagga cgttttcatg ccaaatagac tcatgaactt ggctagataa     10680
     tttattgtga tgtaaaaaag atgtttttat aatttctggc gatgtaaaaa attatgtttt     10740
     tatagagtgc aatgtaattt actttcatat gtgcaatatt tatggtactt tactaaattg     10800
     tcatcacatt tgatcaacta cgatttatgt tgtactattc atctgttttc tccttttttt     10860
     ttcccttatt gacaggttgt ggaggtcgay gacattatgg ctttaatcca ttttggtaag     10920
     tatatatgcg gttytatgag caacgaccga aattgtgtgc tataataaat taaattgttg     10980
     catatgtgat gttgtaaatt gttgcatttg tgatggatct gtgatatgtg atggatctgt     11040
     gatgttatat tggggaggtg gtgtatctgt gatatggagg gggggtgact ggaatatatc     11100
     tgtgatgttt ctgtttttca gagggcatgg ctagcaaatc ctgaggctag ccaatattta     11160
     gcatttattt tttttctgga attaactcat cagtgacggg tcggaacaaa aatccgtcaa     11220
     aggtaacatc acctgtgacg gactagcaaa taaaggcccg tcagaggtga cctacctgtg     11280
     acgggccttt acttttgggg ccgtcacagg tagatcaccc tgtgacagct tctaactacc     11340
     ggagaccatc acctctgacg ggcctttatt taaagggccg tcagagatga gtcacctgtg     11400
     acgggtccta actcgcccta ggctagcgga gaccaacacc tctgacggcc ttctagtaac     11460
     ttgcccgtca gaggtgggtg tcacctgtga cggccggcca cccgtcaaag gtgactggac     11520
     tcaccagtga ccactgatca ctgaccatgc gcgaagccgt caaagatgag ggtttgggcc     11580
     cgtcacaggt gaccttggcc agtgtagtga                                      11610
//
ID   RBTVL_I     repbase; DNA   ; ORY   ; 5949 BP.
XX
AC   AE017121;
XX
DT   04-AUG-2005 (Rel. 10.07, Created)
DT   05-AUG-2005 (Rel. 10.07, Last updated, Version 1)
XX
DE   Rice tungro bacilliform virus like LTR-retrotransposon (internal
DE   portion).
XX
KW   LTR Retrotransposon; Interspersed Repeat; RBTVL_LTR; RBTVL_I.
XX
OS   Oryza sativa (japonica cultivar-group)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza; Oryza sativa.
XX
RN   [1]
RP   1-5949
RA   Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y., Sano Y.;
RT   "Reconstruction of putative DNA virus from endogenous rice tungro
RT   bacilliform virus-like sequences in the rice genome: implications
RT   for integration and evolution.";
RL   BMC Genomics 5(1), 80-80 (2004).
XX
RN   [2]
RP   1-5949
RA   Jurka J.;
RT   "A recent copy of LTR-retrotransposon related to Rice tungro
RT   bacilliform virus.";
RL   Direct Submission to Repbase Update (04-AUG-2005).
XX
DR   Genbank; AE017121; Positions  209328  203380.
XX
CC   LTRs are 99% identical. Present in multiple copies in the rice
CC   genome.
XX
FH   Key           Location/Qualifiers
FT   CDS           503..5788
FT                 /product="RBTVL_I_1p"
FT                 /translation="MDISRSLFRRIASRDDNCSDKQKGKYDDIDELKDVAQ
FT                 VDKQLERYQRDTLRAIRPQQVYCMGFFENKNGLYRISREVELSVLTKPVEL
FT                 KIVAKEFENSLKYSGYKYIHQGMYIIGIKGMTRKKLGAKVLITLLDKRWDT
FT                 INKASLGYLEGDMNENMLITYIAPDLMMPVNEFIDKMSFGFQTKGYEEFKG
FT                 TNLLISIEFIGRLTNRSASKYKINVNDVIEKMHSKGIKFMSPLIIDSEERA
FT                 GEKWPISEFIKNKTLSQPENFISYQDSKGNVSIRFTNYKTRASDDLDAESS
FT                 DRDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEYNNSMKSEWPKIR
FT                 DKELYFYRELSRIKKQKKEKSLVIEIPRTQEIKIEQIKSEEPREEIQKLDK
FT                 VLSEEEQWEVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEE
FT                 GLHNLDNAMEAMEVDLGTGKRKRYGEGSVKNEGERERPARAAGRWPPEKEE
FT                 YSYHYIPGQYRHMGTKRRDFEKPIKFQNQKSDGAILNLAAHDPIDWPNIIS
FT                 IWKGLIVQKYIQNQHNIGNKVEDMITYLETFLGESAKVLWEQWVEKNPNNY
FT                 EELKRAGSNPHNFENIVSNIIIAEDPELGYTTLQNERLKEIEKLTLTSWKG
FT                 IKEFSQHYLYNATTAKQGYNKGIVERYFNKLPDPLGSMIFEEYKKETEGAE
FT                 INISQAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIIQIPLSYGEDRPR
FT                 NKRNHRYQSRNSNNIKTKKRYFLRRSDNRAPFLHKRNVRRYNPKKTYDKTC
FT                 RCFICNSPDHLSRTCPNKDQKRYSSTYEEQERVLIIDSVNENILVCDDEIK
FT                 DDESIYSIIETDEIENTNEEYESTDEELDLIDELAGLKIELMDQLNCEHDW
FT                 IRGKGDYNIKCAFCIYYPSQDNRVTCSICLKQACAECIKANKQKWRKEIEL
FT                 ESDERILSSRVRVLENRINKLEVELENLKINYDIKALPENKDIQNTEFKEQ
FT                 VITLKDSNTAKIIQLKDAITNFGNKYIVKLPFKEILGIRIPVKVKLSPKVS
FT                 YKILALVDTGCTKNIIHDKYFIKCPEIVHTIDDNKAEVSTDMSGIKKIHNQ
FT                 LAHNVEVYINGTKYIIDEITIRNLSMISDDMIIGLRFLQQSVQTTVIHEQG
FT                 ITFIPYQNNVPYISEVRKRGGARIKPDNLEALNLESEERINEYELSENIDN
FT                 YSFSSYLPKSMELPGKTSWEDRYLLKATKDFEYICREMASQKSEWLTNMSS
FT                 WRLPQLPRGHGERFNHNFRITELQQGLLNLLWQTKNKKEKAHALNGLAYYF
FT                 KNFVPSDQKITEKRAKIQDIPHHEERLLDYREEKSRDGQDKLPMEVEQSMA
FT                 TDKNTKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTI
FT                 PQTPYILHNHPNLFLPQYILRTQPKAPCRSCAYKDSCKKKLKSQNPMSTTY
FT                 ENLQPRLSFKTEQTLSCFGQDILDLVWQKFKERQMKIFLGLQDYFFDLLEG
FT                 RERNPAIRVIIYMLPLLRLDDQAISDPSYRFLVLKAEINLQRFRNLPTYNH
FT                 EEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYRIIFSS
FT                 IPPKFTPPVRPAIHYIYIMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWR
FT                 LFSEAAEIEEAITTDYEYQLVFQNKITRIFISKFYNQSYEYFKGAGRIIKP
FT                 DFGNECSKKSYYRSLAQWFQKTEPSEIDTVQSAPMIINEDNE"
XX
SQ   Sequence 5949 BP; 2476 A; 867 C; 1070 G; 1536 T; 0 other;
     taggtttgtc tgaagcatag gtgtggtgta tattgtctga agcataagtg tggtatcaga        60
     gcctggtaat catagagaag ctaaatttag aagctaatat tggaaagtta ataaatacca       120
     aagataatat cgacataagg tgtagactaa gccatactga agaacatagt tggcactcta       180
     ataatagcca actaaattta attgtagatt taatatataa tttctatata aattggagta       240
     agagacaaga agatttagag caaaagttag aagatatata taaagaacaa aagcaatttg       300
     tagaacaata ttcttttctt aataataagc taaatactac attagaatta ttagaagatt       360
     ataagataag gcaaaataaa atttcacaga atagtgatta tattaaagaa ttactagaca       420
     aaatcaactc tagtaaaggt aaggaaatag ttttggcttc atctggcata gtctcatctt       480
     cacaagccat taattctgaa aaatggacat atctaggagt ctctttagaa gaatagcaag       540
     cagagatgat aactgttctg ataaacaaaa aggcaaatat gatgacatag atgagctgaa       600
     agatgttgca caagtagata agcagctcga aagatatcaa cgagatactt taagggcaat       660
     aaggcctcaa caagtatact gcatgggatt ttttgagaat aagaatgggc tttatagaat       720
     atctagagaa gtagaattaa gtgttctaac aaagccagta gaattaaaaa tagtagctaa       780
     agaatttgaa aatagtttaa aatattcagg atataagtat attcaccaag gtatgtacat       840
     aataggaatc aaaggaatga caagaaagaa attaggagct aaagtgctaa taaccttatt       900
     agataaaaga tgggacacaa taaacaaagc atctttaggc tatctagaag gagatatgaa       960
     tgaaaatatg ttgataacct atatagcgcc tgatttaatg atgcctgtaa atgaattcat      1020
     agataaaatg agttttggtt tccaaacaaa aggatacgaa gagtttaagg gaacaaattt      1080
     attaataagt atagaattta taggaagatt gactaataga agtgcctcca aatacaaaat      1140
     caatgtaaat gatgtgatag aaaaaatgca ttctaaagga ataaaattca tgagcccttt      1200
     aataatagac tctgaagaaa gagcaggaga aaaatggcca attagtgaat ttataaaaaa      1260
     taaaaccttg agtcagcctg aaaacttcat aagttaccaa gacagcaaag ggaatgttag      1320
     tattagattt acaaattata aaaccagagc ttcggatgat ttggatgcag aatcatctga      1380
     cagagatatt atagataaca gaagacatag tatatctgaa ttgatggaaa aattagacca      1440
     tgaaagtgaa ataaaatatt atgaagataa attaagagat atagcagatg aatataataa      1500
     ctctatgaaa agtgagtggc ctaaaattag agacaaggaa ctttatttct atagagaact      1560
     atccaggatt aagaaacaaa aaaaagagaa aagcttggtc atagaaatcc ccagaaccca      1620
     ggaaattaaa atagaacaaa taaagtcaga agaaccaaga gaagaaatcc aaaagttaga      1680
     taaggtatta agtgaggaag agcaatggga agtaaatgag aaattattac tagagagtta      1740
     tgaagaagaa aacaacctga tagaggaaat agagaatata gaagaagaag ataatgcaga      1800
     acaatataat gattttatag actcattgga tgaggaaggt ttgcataatc tagataatgc      1860
     aatggaagct atggaagtag atttgggaac aggaaaaagg aaaagatacg gagagggttc      1920
     tgtaaaaaat gaaggagaaa gagaaagacc agccagggca gcaggaagat ggcctccaga      1980
     aaaagaagaa tattcatatc attatatccc aggacagtat aggcacatgg gcactaaaag      2040
     aagagatttt gagaaaccaa taaaatttca aaatcaaaaa agtgatgggg ctatactaaa      2100
     tctagcagca catgatccca tagactggcc aaatatcatt agtatttgga aggggttaat      2160
     agttcaaaaa tacatacaaa atcagcataa tatagggaat aaggtggagg atatgataac      2220
     ttatttagaa acatttttgg gtgaatctgc taaagtccta tgggaacaat gggttgaaaa      2280
     gaatcctaat aactatgaag agctaaaaag agcaggaagt aatcctcaca actttgaaaa      2340
     tatagtatct aatattatca tagctgaaga cccagaatta ggatatacaa ccctgcaaaa      2400
     tgaaagatta aaagaaatag aaaaattaac tttaacaagc tggaaaggta taaaggaatt      2460
     ttctcaacat tatctatata atgcaacaac tgctaagcaa ggatacaata agggaatagt      2520
     tgagcgatat tttaataaac tacctgaccc attaggtagt atgatttttg aggaatataa      2580
     aaaggaaact gaaggagctg aaattaatat ttcccaagcc ataaccttcg tgttcaaaca      2640
     attaagaaaa atatgcacag gaatacaagc ccaaaggtca atgaaacatt ctgattataa      2700
     tttttgcaat aaaataatac aaataccttt atcatatgga gaagataggc ctagaaataa      2760
     aagaaaccat agatatcaaa gtagaaatag caataatata aagacaaaga aaaggtactt      2820
     cttaagaaga tcagataata gagcaccttt cttacataaa cgaaatgtaa gaagatataa      2880
     cccaaagaaa acttatgata agacatgcag atgtttcata tgtaattcac cagatcattt      2940
     aagtagaact tgcccaaata aagatcaaaa aagatattct agtacatatg aagaacaaga      3000
     gagagtttta attatagata gcgtaaatga aaatatatta gtatgtgatg atgaaataaa      3060
     agatgacgaa tcaatatatt ctatcataga aacagatgaa attgaaaaca ccaatgaaga      3120
     gtatgaatca accgatgaag agttagattt aattgacgaa ctagccggtt taaaaataga      3180
     attgatggat cagttaaatt gtgaacatga ttggattaga ggaaaaggag attataacat      3240
     taaatgtgct ttttgcatct attacccaag ccaagataat agagtaacct gtagtatatg      3300
     cttaaaacaa gcttgtgctg aatgtataaa agcaaataaa caaaaatgga gaaaagagat      3360
     agaattagaa tcagatgaaa ggatattatc tagtagagta cgagttttag aaaacagaat      3420
     aaataaacta gaagtggaac tagagaatct aaaaattaac tatgatatta aggcattacc      3480
     agaaaataag gatatacaaa ataccgaatt taaagagcaa gtgataacat taaaagacag      3540
     taatactgct aaaataattc aactaaaaga tgccataact aattttggaa ataaatatat      3600
     agtaaaactg cctttcaaag aaattttggg aataagaata ccggtaaaag taaaactatc      3660
     acccaaggta tcatataaaa ttctagcact agtagacact gggtgtacaa aaaatattat      3720
     tcatgataag tacttcataa aatgtccaga aatagttcat acaattgatg ataataaggc      3780
     agaagtctct acagacatgt ccggaataaa gaaaattcat aatcagctag ctcataatgt      3840
     tgaagtatac attaatggaa ctaaatatat aatagatgag attacaataa gaaacttatc      3900
     catgataagt gatgacatga taattggcct aaggttttta caacaatcgg tacaaaccac      3960
     agtaatacat gagcaaggaa ttacttttat cccatatcaa aacaatgtgc catatatctc      4020
     agaggtacga aagcgtggtg gagccagaat caaacccgac aaccttgaag cacttaatct      4080
     tgagtctgaa gaaagaatta atgaatatga gcttagtgag aatatagaca actattcttt      4140
     ctcatcatat cttccaaaat ctatggaatt gccaggtaag acatcatggg aagatagata      4200
     tttattaaaa gctactaaag attttgaata tatatgcagg gaaatggctt cacagaagtc      4260
     tgaatggctc acaaatatga gttcatggag actgccccaa ctgcctagag gccatggaga      4320
     acgatttaat cacaatttca gaataacaga gctacaacaa gggttattaa acctcttgtg      4380
     gcaaacaaaa aacaaaaaag aaaaagctca tgccttaaat ggcctggcat attatttcaa      4440
     aaatttcgtg ccctcagatc aaaagataac agaaaaaagg gctaaaatac aagatatccc      4500
     tcatcatgag gaaaggttac tagattatcg cgaggagaaa tcccgtgatg gccaagataa      4560
     acttcccatg gaagttgaac aatctatggc aacagataag aataccaagg tattctcaga      4620
     taagattttg atctcagcag atcctgcttc gagcatggtt gctttccaca taaatatcaa      4680
     taacctattg caatcttttc cacataataa accatcatca tccacaaaaa ggcatgatac      4740
     cattccccaa acaccataca tactgcataa tcatcctaat ttattccttc cacaatatat      4800
     actccggacc cagccaaaag caccatgtag atcttgtgcc tacaaagatt cttgcaaaaa      4860
     gaaacttaaa agccaaaatc ccatgagtac tacatacgaa aatctccaac ccagattaag      4920
     cttcaaaacg gaacaaactt tatcctgctt tgggcaagac atcctcgatc ttgtttggca      4980
     aaagtttaag gagagacaaa tgaaaatatt ccttggactc caagattatt tctttgatct      5040
     cttagaaggg agagaaagaa acccagccat acgagtaatc atatatatgc tccctctctt      5100
     aagactagat gatcaggcaa tttctgaccc atcctataga ttcctggttc tcaaagctga      5160
     gataaatctt caaagattcc ggaacctacc cacatacaac catgaagaaa tatctctcca      5220
     aaccattata gatcatggtc ttgtgaattc catatatgca accctcgatc agatccttca      5280
     atctgattta ggaaacgctg tgaaagatgt atgcaggaga cttggacatg gaagatacag      5340
     gattatcttc tcctcaatac caccaaaatt cacaccacct gttcgtccag caattcatta      5400
     tatatatatc atgaagggac aatttaattt tcaagaagac ggtcctagca aactatcgga      5460
     tgaagaggaa gaaatatata caacagttgc taatcatgaa aattggagat tattttctga      5520
     agctgcagaa attgaagaag ctatcaccac agattatgaa tatcagctgg ttttccaaaa      5580
     caagatcaca aggattttta tcagcaaatt ctacaaccaa agttatgaat acttcaaggg      5640
     agcagggcgc ataattaaac cggattttgg aaatgaatgc tccaagaaaa gttactacag      5700
     aagcctggct cagtggtttc agaaaacaga gccatcagag attgacacgg tgcaatcagc      5760
     accaatgata atcaacgaag ataatgaata aagatcttgt catccccgac aaagatcact      5820
     attcaagata aggaatctac actattccag ataagtatgg atcttggtgg tcatgggcag      5880
     ccagatgaat agaattcttt aagctaaata tgtttttcaa tatatattga taatagaata      5940
     tcaataatt                                                              5949
//
ID   SZ-8        repbase; DNA   ; ORY   ; 5498 BP.
XX
AC   .
XX
DT   16-AUG-2004 (Rel. 9.07, Created)
DT   16-AUG-2004 (Rel. 9.07, Last updated, Version 2)
XX
DE   Rice retrotransposon SZ-8.
XX
KW   LTR Retrotransposon; Interspersed Repeat; SZ-8.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5498
RA   Jiang N., Wessler R.S.;
RT   "SZ-8: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 123-123 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-8 has 352bp LTRs.
XX
SQ   Sequence 5498 BP; 1462 A; 1129 C; 1299 G; 1608 T; 0 other;
     tgtcagggag tgtgatcctg aagaagacaa ggacaagaga agggagccaa gtattgagaa        60
     ggcagaagaa gcaggaagac aagctgaaga cttgggccgt catccagctc gtctgaggag       120
     gcccaatacc aaggtccaag gcccagactg ggttgcgtga gtcacttgct cgcctgtgag       180
     ctggcgtgat gttggtgtta gttaaatact gttctgtaaa ctgaattaag acattgaatt       240
     ggcaactgga ggcgtaggcg gcggcggctc gatcctgttg gatctgagag gaaactatca       300
     tagtgttgcc aaattatgtg tgtgcttgag tgaatccttg tgagccctaa caatctggta       360
     tcagagccct tccgtgctgc atttcctctt gatttggctg taaatttttc tccagagcga       420
     ggtgggattt ggctgcttcg gcggtgagaa atccacaaaa gtttcggctc cctcaatctg       480
     gttggctaaa ttcggagagc atgtgaggga ttacggtcca aaactagcca tggatctaga       540
     cgccaagttt gatctcttgt tcaagaccat tgctgacaac gagaagaaga ggatggaggc       600
     ggaggagcgt accagggcgg actacttgga gttgaagaag acggtcgagg gccgcatacc       660
     ggcgatggag aagaaggtgg aagaactagg tgagtcgctg cagtccttga gcaccaaggt       720
     cgagcagctg gaaggcaaca cgatgcggca agtcaagttt gaaccattct ctgctgcaag       780
     tgcttcgggt gttcaaggag gagctaagga ggagcagttc ggaggtgttg cgggaatgtt       840
     tactcctaat ggtacgcctg agaaattttc cccttcccct attcctttca attgcgattc       900
     ggcatcaccc acttttggta acggaatggg gacaatgaat ctaagtagtg ctattcctcc       960
     tatgacttgc cctcaattta ctggtgataa cccccaaatg tggaagtcaa actgtgaaca      1020
     atattttgat gtctatggaa tattgccagt tcactgggtt aagattgcaa cactcaattt      1080
     ttctggtaat gctgcctttt ggtttcaatc tgttagaaat cagatgagtg ggatttcttg      1140
     ggtgtctttg tgtgatttgg tatgctccag attttttaag gataggcagc aagctcttat      1200
     cagacaatgg ttccatatta agcaagaggg cagtgtttca gagtatgtgg aaaaatttga      1260
     tagtctgatg catcagttgc tagcttatta caactccctg ttgcctgttt actttgtgac      1320
     taagtttatt gaagggctta gaagtgacat cagaatggta gttttggttc aaaggccaca      1380
     agatttggat tcaacctgct cagtcgcatt acttcaggaa gaggctatgg aaggtgttaa      1440
     gttccagggc tacaagagac caaacaattc agttatgatt agaaacaact caccagcccc      1500
     gatagttgga caggcctcca caccccagaa aatcttctct cctcaaatta ctgaagatag      1560
     aaggggcact gaagctgcaa gagcaagaga tgacagactg tcagctctga aatcctatcg      1620
     caggtctaaa gggctctgtt tcacctgtgg tgaaaaatgg ggtaaggatc ataaatgtgc      1680
     cacagcagtg caattacatg ttgtgcagga gcttcttgat attttacact caaaatctcc      1740
     tacataaatt gaatcttctg gtggagaaca agaaattgat gaagtgggag atttgatgtc      1800
     tatttctcaa caggcagttt gggggactga atcctctcgt tctatcagac tcatcggctg      1860
     ggtgcagggt actgaattat tgatgctgat agactctggc agtactcatt cctttatgga      1920
     tgaaacagtt ggttctaaga tggtgggtgt ttctccactc aggaagccct tgtctgtgca      1980
     actagctgat ggtgggtcct tgttatgttc ccatgagatt gctaattgta agtggtggat      2040
     gcaagggcat tctttctcta gtaatttcag actcttgaac ttgggtggct atgatatcat      2100
     attgggcatg gactggttgg agcaattcag tcctatgcag gtggattggt cacagaaatg      2160
     gatggaaatt caagttaaca accagcctgt caggttgcaa ggtataactt cccagactaa      2220
     cagttgcaat gctatctctg ctgaacaatg cttgggtatg gctagaaagg ggtctattct      2280
     gtatttggtc caattgacat cttctgtttc agaaatctgt gacactatgc ctgaagcagt      2340
     acataattta cttctcaagt tccaggatgt tttttcagaa cctactgaac tccctcctaa      2400
     gcgatattgt gaccatagta ttcctcttgt acctgtggca acacctgtta atttgaggcc      2460
     ataccgcttt aatcctgctc ttaaggatga gattgaaaag caaatttctg atatgttgaa      2520
     atctggagtt atccagccta gccacagtgc tttctcatcc ccagctctgt tggtcaagaa      2580
     gaaggatggt acttggagac ttgtcattga ctatagaaaa ttaaatgcca ttaccatcaa      2640
     gggtacttat cccatgccaa tcattgatga gcttttagat gaattatctc aggctaagtg      2700
     gttttctaag ttagacctac gagatgggta tcaccaaatt agaatggccc ctggtgagga      2760
     gtataagacg gctttccaaa ctcatactgg acactatgaa tacatagtaa tgtcttttgg      2820
     gctgacggga gctccggcta cctttcaaag tgcaatgaat gatactctga aaacagttct      2880
     ttgatgatat cttgatctac agccctgatt ttgagtccca tctggatcat attcaccaag      2940
     tactagcctt actgtctgaa catcaatgga aggttaaatt gagcaagtgc tcatttgctc      3000
     aacaacaaca tacttatctt ggccacacca tcagtgctac cggtgtccat actgatcaga      3060
     gcaagatcca ggaagtgtta aactagccag taccaaccac tatcaagaaa ttaaggggtt      3120
     tcttgggatt ggccggttac tatcgaaaat ttgtgaaggg atttggtctc attagtaagc      3180
     cccttacaaa tcttttgagg aaggatgttc cttttgtgtg gaccactgca actgactcag      3240
     cttttaacca gcttaagtag gctctggtga ctgccccggt cctagccttg cctgatttca      3300
     agaaggtctt cattgtggaa actgatgctt ctgaagctgg tattggggct atgttatcac      3360
     aagacaatca tcctatcgct ttcattagta aggccttggg tccaagaaca aaaggcttgt      3420
     ctacttatga gaaggagtgc atggcaatcc tcatggcagt tgatcaatgg aggtcttatt      3480
     tgcagttggg ggagtttatt atccttattg atcatcatag tcttatgcac ctttctgacc      3540
     aaaggttaca cacaccctgg caacataaag ctttcactaa actccttggc ctcaattata      3600
     aaatttgtta cagaaaaggt accagtaatg ctgcagctga tgctctctct cgcaagtttc      3660
     aggatgataa cagtgaattg tatcacattt ccagctccac cccactctgg ttgcaagaag      3720
     taacaaaagg gtatgctcag gatccctttt cccttcaatt cctcactgaa ttatctgtct      3780
     gtccaacttc caggaagcat ttttctctct ctgctgggtt actgaaatat aagggcagag      3840
     tttggattgg taacaatgat aatttacagc ttcaactcat gtctgcactg catgacagtc      3900
     ccattggggg acactctggc tttctagtta cttataggaa aatcaaacaa ctgtttgctt      3960
     ggccaaacat gaagaaaatg gtaaaaacct ttgttcacca gtgccaagtt tgtctccagg      4020
     ccaaacctga tagagcaaag taccctggcc tccttaaacc tctccctgtt cctgaaggag      4080
     cttggcaaac tatatccttg gatttcaatg aaggattgcc caggtctgag cattctgatt      4140
     gcatcttggt tgttgtagac aaattctcta agtacagtca cttccttccc ttagctcacc      4200
     catttttagc tctatctgtt gctaagctgt tcatgaaaaa tatctttaag ttacatggtt      4260
     tgcccctggt tatcattttt tttagagata aggtttttac tagccaactt tgggaacact      4320
     tgtttgaggg agctggcacc aagttacatt tcagttctgc atatcatcct caatccgatg      4380
     gtcaaaccga aagggttaac caatgcctgg aaatatactt gcgttgtttt gttcattcag      4440
     ttccttccaa atgggctgca tggttgcatc tcgctgagta ttggtataac acatcctatc      4500
     actctgccat tcatgctact ccatttgagg tcctttatgg tcatccccca aaccattttg      4560
     gcattggtat ttcagactgt tctattcctg agatggatac atggttcaag gaaaagaagt      4620
     tgatgcaaca acttgtacag caacaccttc accgcgctca gcagcaaatg aaacactttg      4680
     ccgacaagaa aagaagtttc agaacttttg ctattggtga ttgggtatac ttgaaacttc      4740
     agccgtatat acagacttct gtggctgtca gagctaatca caaattatca ttcaagtatt      4800
     ttgggccttt tcaagtgatt tagcgtgtgg gcagtgtggc ttatagactt taattaccac      4860
     ctcatagttc tatccaccca gtgttccatg tgtcccaatt gaagtccgct gttggattct      4920
     ctggtcttgt tcaatccaaa ctgcccactg atacttctac attgcagttt cccttgcata      4980
     ttttggacag gcgtttggct aagaaaggta attcaactgt cactcaagtg ctaactcaat      5040
     ggtctgattc tctcccagag gaagccactt gggaagatat ggaggatctg cgttcccgtt      5100
     ttccagctgc attggcttgg ggacaagcca attttcaagg ggaagggctt gtcaggaagt      5160
     gtgatcctga agaagacaag gacaagagaa gggagccaag tattgagaag gcaaaagaag      5220
     caggaagaca agctgaagac ttggggctgt cgttcagctc gtctgaggag gcccaatacc      5280
     aaggtccaag gcccagactg ggttgcgtga gtcacttgct cgcatgtgag ctggcgtgat      5340
     gttggtgtta gttaaatact gttgaattga attaagacat tgaattggca attggaggcg      5400
     taggcggcag cggctcgatc ctgttggatc tgagaggaaa ctatcatagt gttgccaaat      5460
     tgtgtgtgtg cttgagtgaa tccttgtgag ccctaaca                              5498
//
ID   HELITRON2_OS repbase; DNA   ; ORY   ; 15167 BP.
XX
AC   .
XX
DT   10-JUL-2002 (Rel. 7.06, Created)
DT   10-JUL-2002 (Rel. 7.06, Last updated, Version 1)
XX
DE   HELITRON2_OS is a rolling-circle DNA transposon - a consensus
DE   sequence.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; HELITRON class;
KW   HELITRON2_OS; helicase; replication protein A.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-15167
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON2_OS.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
CC   [1] (Consensus)
XX
CC   HELITRON2_OS encodes the 1813-aa OSHEL2p and 367-aa OSRPA2Hp
CC   proteins.
CC   OSHEL2p is composed of the rolling-circle initiator and DNA
CC   helicase domains.
CC   OSHEL2p (CDS positions 3937-4329, 4595-4741, 4825-6876,
CC   6956-7621,
CC   7713-9869, 10180-10323, 10388-10703):
CC   MAAVGVSFVSLLNAVAWHCRLPSVSYLWELDGNDILLAGVELALPSDESPSKTVSKFFWIATSDQPIVSH
CC   EMVAHQAVRFLFAKYGFAVHDYNLQTLLLYRQIAASAVDAALTASTHLARFRARYGPMDLSFLVFGLCLP
CC   PFLSSNLPSLGFSLYTMSGSSSQRVQRARESRTRRRASIGQGFLQAPVFSNVSPTAPRLTTVLPGLSGSI
CC   PSVPKPALSLPTISDVGVESQTGSIGSTSCPVHDSQPAPSRKRTLLDVPRHAATANRERRRLKRAGGDSG
CC   HLLQKILDGPVPTLDDVLPLPKDYIASLKALCPERSYYGGPSHECPYCGAAFWYQERVKRDSAVTQRRIV
CC   YNLCCRAGKISLPELRFPPAMLANLLRFDGDRRSRRFLRQIRSYNSLFAFTSLRADVDKSINNGTAPCVF
CC   KINGIVHHRIGSLLPQQGAPPKFAQLYIYDTENEVSNRMRVFDKESSTDEPDPFIVTELGAMLDEHNDLV
CC   KSFRFARKRLKDHGDEKIALRLLGCNSKDEVQYNLPTSGEIAGIIVGDYSNDKYTYDVVVQSCDSRLRRV
CC   SALHPSYMALQYPLLFPYGERGFHLDMYSTVEGSRLKFIADNQPDLRSECVQGIADAIDHGLESGDSVGQ
CC   KYVLPSSFTGGRHYMVQNYQDAMAVCRVFGSPDLFVTFTCNSKWQEIYDALLFEPGQVPSDRSDMIVRVF
CC   NMKVNEFITDIREGKTFGPVLAVLYTVEFQKRGLPHIHCLVWLAASTTDFNAATVDGFSSAEIPDVFTDP
CC   LGYALVDEFMIHGPCGEKNKSCVCMKNNQCSKHFPKSFQDETIMDEFGFTVYMRRNNGRYVVKNGIKLDN
CC   RWVVPYNMKLLKKYQAHINVEWCNKSNMIKYLFKYVTKGSDRTKVYFETTGNTANKPTDSNAAPRNEIDE
CC   YINARFLSTCESIWRTLEFDIHYRVPAVERLAVHEWFEANKKHSKARHLTYCDFPKEWTWDNSARCWRPR
CC   TPVEKIGRMYYINPVAGELYYLRMLLMIVKGATCFADIRTYEGVVYPTFRQACEARGLHENDNEWHLLFD
CC   EAIVSASSYQLRQLFVTVVMFCSIGNVRSLFDKYWTYFTDDIQHRVRKMLSNPSYVIPHDRLLSLLIKEL
CC   KSVFANSGGNIDDYDLPQSTARTDDDSGNRMVNEELALDSVALAAHADSIIPKLNSDQKRVFDTIMCRVN
CC   ESKPGFFFVYGHGGTGKTFLWNALISKVRSEKKIVLAVASSGVASLLLPRGRTAHSRFKIPIDINENSLC
CC   TIKRGTMLAELIQKTSLIIWDEAPMTHRRCFEALDRTLRDLLSEHAPSNGLVPFGGKVVVLGGDFRQILP
CC   VVRKGSRASIIDASITNSPLWSHAVLLKLTVNMRLLQCNLGEQQQQELEKFAQWVLALGDGKLPVSKRND
CC   ESEATWIDIPDDLLIKTTGDKIHSIVNEVFPGFASKYTDRSYLASRAIVCPNNSTVDDINDRMVDMVPGE
CC   VKEYLSCDTISKSSEHIPDFDLLYPTEFLNSISANNFPAHKLALKKGVTVMLLRNLNQSMGLCNGTRLLA
CC   LSLGQRLLECQILTGTNIGDRVFIPRIALTTTSPKWPFTLQRRQFPVRVCYAMTINKSQGQTLKRVGVYL
CC   KKAVFTHGQLYVAVSRSTSRDGLRILIEGDDEACSSKTRNVVYHEVLQTVDLMMGHTLLSDLSLGDDNER
CC   ICVRVSRFWAFCDQKDDDKILHFGLVLIDEKGTSIAAQIYPPCDEIFRPIITEGKVYYIKYFRVRKCNRQ
CC   YKPVDNCMSIYFTRWTKLEERVDPPAEIPLYTYSLSPFGGLRSRVGKKDSFTGSLTLLLLMHA
CC   OSRPA2Hp is similar to the RPA70 subunit of the replication
CC   protein A.
CC   OSRPA1H2p (CDS positions 11101-11235, 11313-11393, 11489-11606,
CC   11690-11854, 11937-12443):
CC   SNAILNVALWGERATSFPADEVFVAGQKEPQIVIFVGTLVKGYGNGDVSLSGNSACKWYINADTPEVISL
CC   RNSIQATYSPIEWTDLPPAAPAYSNAEPKTIIQIKDLNPFEFQKHEFLVTVVIKKIDMEYSWWYTACDIC
CC   RRTARPYGNAYKCQNESCPPLVGASPRFKLSVVAGDDTADAKFVLFGRLAQCLIGRSVEILLEGNAAGKE
CC   AIPKEITNLLEENFTWKVAITENTMSSSNVSFQVNMIVGNGNSQNPAIPQSPSASQASSMVPSLALSPSV
CC   THELSVGQSTAAFAPSIGFSDPPATPSAGLNSPLVVGAKDKNDDVECQSKTPVQVLDEEDEDDDNLPLSQ
CC   MGGHSATKKTTSKSHNK.
XX
SQ   Sequence 15167 BP; 3872 A; 3426 C; 3296 G; 4573 T; 0 other;
     tcggagagat taaaggggac cgcgaaatgg agccaccaca gcgctccggg gcttttttgg        60
     ctggcgtgtt cgcttccggt gatatccacg tcgcccggcg ctggaggtgg cgttttgcaa       120
     aaaagtcctc tatctatata ataatagcta ttagatccct cattgtatgg ccaagaccag       180
     cgcgattcta aatatagggc cgcggtctaa gaaaaaagaa actcatgggt tttttcggaa       240
     aaagaaaaca tccctatccc ttcccttcgc tgaaatcggc gctagaggtg gcgttttgca       300
     aaaaaatcct ctatctatat aataataact gttagatccc tcattgtatg gtcaagacca       360
     gcgcgaagga ggtaagattc taaatatagg gccgtgctct gaaaaaaaaa gaaagccatg       420
     ggtttttttc gcaaaaataa aacatcccta tcccctccct tcgccgaaat cctagccgtc       480
     actgttcacc cttcctcgct tctcctcgcc gcaatcgtct tccgcgggtg gcatcgctca       540
     cgctgtcccc cgcccatctc cgcctttctt cctccgccca tccccgccgc cgtcacccag       600
     ccaccttttc cctcctttct tcctccatga ttacagtcga ccaggtgatt ggacggtgcg       660
     gcgccaaatc aatggtgtgg gggatcgatg ttctggtctt gattcctttt ctctcttatc       720
     ttccctcctt tcttgcttat ggcatgccaa atcgatggtg tggggatcga tcgatgttct       780
     ggtctcgatt tgctggttcc ccttctgttc aagctcgagt ctttgccatc gtgcggcacc       840
     aagctccgcc gttctgcgcc gccagcgctg tttgccgatt acagatatga tgatattggt       900
     tggcttccca tattcacttt tggtaagtta atccacagac agttccttcc tatgttcttc       960
     gcttgcaaag aatgggctgc ctacgaaaaa acaaatttgt gattcctatg ttttcccctg      1020
     gttgtgtttg catttatccg gaacaatgct aattctgatt tgtgatggtt agattttgct      1080
     ttagttgtgt ttgtatatag cccgaacaaa cagatccgag gtgtttgttt ccccagtgtt      1140
     ttccctgccg agacaacggc tctgccatag ttgcacagat gcaagttcat tgcctctttg      1200
     gaatttaggt caggctaagc agaattaggc ctgctgggat tttttttgtt agccgacaac      1260
     acctcaagca taactgcacg gatgcaaact gttagattac atgacccctt tagaattcag      1320
     gccaggctaa ccagaactag gccaacatag aaaatttttc gttgatattt ggattttatt      1380
     taacacccac atgagaatat ggaaagttct ctactttttt taagtttggg actaggtacc      1440
     atgtcctaga tatcgaataa gagattactc tgaaaaattt tcttcataaa ctggtgtgaa      1500
     tgggggagca tcagtcattg gattatacct gataatttag atgtacgttg tcttcctatg      1560
     gcttttcatc taatgtatat gatttattat tcaatggaaa ggtactgtta tacatggaga      1620
     taggttgccc ctttctttgg agggtggtag gtacagtcct attataaata acaaatgtga      1680
     attcttcttt tatcttattc atgtaaaaag gattggttcc ctccatgtat ggtgctcatg      1740
     tatgtcagag ctatatgcca tgtttcttgc tatctagcaa cctccttttg aaatttaggc      1800
     taacaggaga aagtagggct gtcagttttt ttgtttaacg gcttttccaa catattcaga      1860
     tgcaaagaca tttcagtgcc ttttaagaga ttaccaacag actgagatga ctatttcaaa      1920
     gcaggacatg caacagcgat gttgttcacg catggaacag cttttagtag ggaaatttga      1980
     gcgtgtctac cctttatacc tgaacaacat tattttcaca gcgagtaggt gtaaaaaggg      2040
     atttgtaata tatggactta tgtctgccat ttccggtgtg ttgtctgcac taatctgcat      2100
     gtcgcataaa acgcacgcac gcaccagttt ccaagattgc aattttgcaa gcaaatagaa      2160
     tcagaaacct ggtgcacgcg aattcttaga atccccagag cgcgattgaa ggacatgtat      2220
     ctgaaatatt aaagagaacc acaaaatttg ctaaattgtt gcatacacgt agcccttcac      2280
     atttctatga gaccatattg gacggttaat gtctgagaga gtctggttta gaataggcat      2340
     tggataaggc tagcttcata acgtgtttta agagggcgat cagggcaagg tttagggcat      2400
     gaatcagaac atttaagaaa ctacagtacc gtaccttact tttatctgta aagttgctct      2460
     ttttaatatt taaataattg gcaggttgga gacatcacca ggtttgttgt gctctatatg      2520
     gtctgtgctg tgctcccctc tgtgcctggt tcgctgtggg gatgtgcgtg ggtgcctgtc      2580
     taccaacgga gctgacgctc gatggcccac ctggtagtca ctttggtcca tggtgcgccg      2640
     gtgctaggta gttccttccc tgcctgacag gctttccttt tggtacaccg cccactttta      2700
     ctcaggacaa tgcactgtct ctctgtgtga gacacgtcta ttcgtggttc tcctaccaac      2760
     gtggtgcacc atggtccccc atcacacagg tgctttccta tatgcgtgtt ccgtgcgcta      2820
     ggagcacgtt cacctaacac cactgaaagt agctgagaaa ttatccgctg gttaatacca      2880
     caaaaatcct gatgcacatg catctattcg ttgcagtcag cgacaggtgg ggtcaatttc      2940
     gtgtgcttcc ccacctgcca tacactatgc ccatccggga ggttatagct gtatgatgcc      3000
     atgttttttt gtgagcgccg cgcgctacgc caccgcgtga ggcaccatca aatcgacgtc      3060
     catacacacc gtaccggcgt gcgcgcgagc accgatgccc acgtcatggt cttagccttt      3120
     ccttctcctc ttcatacccg gttcgttagt tctgctcgag gctgttgctg gttcggttcg      3180
     ttggtgtgct ttgctcccgt tttgcccctt ttcgctgttg cgcacatggc gagcaccagg      3240
     tgatatgctg ccccatatgt ctttcgttct ccctgactgc tattctgaat gtgtatgcgt      3300
     gtgcagggga cattgtggat actgcgtcga cacttaggat ttgccccgct catctaggta      3360
     tattgcctaa ctcaagcttt gtgcttcctt attgtcctgg atcttgattg ttgtttttgc      3420
     cttccagtgt acgactttag ctcctcgacg ccctgttcat ttcgctcgaa ggtcttggtg      3480
     gggttcgcgc tgtaggccag gacgctcggc cgaggtgact ctgcccattg gcttcttcgc      3540
     tagcccatgt ctgcacgcgt tcctcgatcc tacgaggtat atatccctcc tccttctacg      3600
     gctttgatgt tcatttgttc ttctgcgttt ctttccattg cgcttggcct ttatttcgtg      3660
     attttattgt ggttggtttg ttctgtgcct gctctatagt tactgacagt ataatatatg      3720
     ttatatatgg aaaaatgtgt ctcagtgcct taccaggcac tgcatatggg cccatacaac      3780
     catactagct gcagctgctt gcctctttct gatctttcct tttctcactt cagtgctttt      3840
     gcatagtact gcctgatagt gctagaactg ctgtgcgtct ctacacgccc tttgaaatat      3900
     ttctctgcga ttcgcagtgt tagctctttc tccaagatgg cggctgtggg agtttccttt      3960
     gtttctttgt tgaatgccgt cgcatggcat tgtcgcctgc catccgtctc atacctctgg      4020
     gagctagatg ggaacgatat cctgctagca ggtgttgagc ttgctctgcc atccgatgag      4080
     agtcccagca aaaccgtaag caagttcttt tggatcgcta catctgatca gcctattgtt      4140
     tcccatgaaa tggttgcaca tcaggctgtt agatttctgt ttgccaagta tgggttcgca      4200
     gtccacgact acaacctgca gactttgctt ttataccgtc aaatagctgc ctctgcagtc      4260
     gatgcagctc ttacggcctc gacgcacctt gctaggtttc gggcgcgcta tggtcccatg      4320
     gatctgtcat gtgagtgtat tctgcgacag tgcattgctc tgtggtccaa ttttgttaag      4380
     gaagaccact tcttctatag cacatatagg ccatagaagt agctactgca ccaaacaatt      4440
     gtgttttagg atacgcgttt cgtaaaacta tgtgtaatag taccttttct tcagcgtatc      4500
     tgtttctaat ggatgagtcg ttgtttggat ttgtatgtgc gtgcccattt atatattaaa      4560
     tgctccatgg tttcttactg atgattctgc agttttggta tttggtttgt gcctgccccc      4620
     cttcctgtcg agcaacttac ccagtttagg attttcccta tacacgatgt cgggtagctc      4680
     ttcccagcgt gtacagcggg cacgggaaag tcgaacgcgc cgacgtgctt ctataggcca      4740
     gggttcgtgc ttctttgcat tgcttaaaat gctacatacg attttttcga tgggcctcac      4800
     ccaaaaaatg gttttccctt tttaggattc ttgcaggctc ctgtgttcag caatgttagc      4860
     cctacagccc ctaggctcac cactgtcctc ccaggtctat caggttctat accgagtgtg      4920
     ccgaaacctg ctctcagctt gcctactatc tcggacgtgg gtgttgagtc tcagaccggg      4980
     tcgattggca gcacgtcgtg tcctgtgcat gactcacaac ccgctcctag cagtaagttt      5040
     acaatgatct gcattctaca ccatagttct ctccaatgat gcttatgttt agctttccat      5100
     gctgccgttg ggtctaggaa aaagaacact cttagatgtg ccacggcatg ccgctacagc      5160
     aaatagagaa cgacgccgtt tgaagagagc aggaggtgac tcgggtcatt tgctgcagaa      5220
     aattctggat ggtaaacctg ctgcacagcc attttttctt tcttcttttt tccccttggt      5280
     acaagtgtgt tgtttgatag ccgtcatggc ttaatgaggt ctccttgctg tactttcaac      5340
     tacataggtc cagtgcctac tcttgatgat gtcctgccct tgcctaagga ctatattgca      5400
     tcattgaaag gtctgttcaa tgctgattag ttcttttggt acttttagct ccatctatct      5460
     ccttgcttcg cacctaacaa atatgcagcg ttgtgccctg agcgatccta ctatggtgga      5520
     ccgtcgcatg aatgccctta ttgtggtgct gccttttggt accaagaaag ggtcaaaaga      5580
     gatagcgctg ttacacaaag aaggatagtg tacaacttat gttgcagggc tggtaagatc      5640
     agcctgcctg agctaaggtt tccacctgct atgttagcga accttttgcg atttgatggc      5700
     gatagacggt caaggcgttt cctacgccaa attcgatcat acaactctct ttttgcgttt      5760
     acttccttaa gagctgatgt agacaagtcg attaataatg gaactgcacc atgtgttttc      5820
     aaaatcaatg gtattgttca ccaccggatt ggcagcctgc taccacagca gggtgccccg      5880
     ccaaagtttg ctcaactcta catatacgat actgaaaatg aggtcagcaa taggatgcgt      5940
     gtattcgata aagagagctc cactgatgaa cctgacccat ttattgttac agagttaggt      6000
     gctatgcttg atgaacacaa cgaccttgtc aaatccttcc gctttgctag gaaacgttta      6060
     aaagatcatg gcgatgaaaa aattgcgctt aggctccttg ggtgcaactc aaaagatgaa      6120
     gtgcagtata acctaccaac aagtggtgaa atagcgggga taattgttgg cgattattca      6180
     aacgataaat acacatacga tgttgttgtc cagtcctgtg atagtaggct aagacgagta      6240
     tcagctttgc atccatccta tatggcgctg caataccctt tgcttttccc ctatggggaa      6300
     cgagggttcc acttaggtat aaaatatact gatttcccga gcataactgg aacatcacga      6360
     cgctatgtga caatgcttga gtactatcgg taccgcctac actatagact aaataaacca      6420
     aacccatata cgtgttgcgg tcgtcttagt gattctatat gtgtagatat gtactcgact      6480
     gttgagggct cgagactaaa gttcattgct gacaatcaac ctgatttgcg atcagaatgt      6540
     gtgcagggaa ttgcggatgc aattgaccat ggtcttgaat ctggtgattc tgtgggccag      6600
     aaatatgtat tgccttccag ttttactgga ggccgtcatt acatggtcca aaattaccaa      6660
     gatgcaatgg ctgtttgtcg tgtatttggt tcccctgacc tttttgttac tttcacgtgc      6720
     aattcaaaat ggcaagagat atacgatgcc ctcctatttg aaccaggcca ggtaccgagc      6780
     gatcgttccg acatgattgt gcgagtattt aacatgaaag ttaatgaatt catcactgat      6840
     attagggagg gaaaaacttt tggcccagtc cttgcaggta ggggtcatga ctatggtgtt      6900
     ttgcagctag ataggtgtat tgtggactgt ttctaacact taaaatcatt atgtagtgtt      6960
     atacacagtg gagttccaaa aacgtggcct accgcacatt cactgccttg tgtggcttgc      7020
     agcaagcacc actgatttca atgctgctac tgtcgatggt ttcagttctg ctgagattcc      7080
     cgacgtattt actgaccctt taggttatgc tttggttgat gagtttatga tacatggtcc      7140
     ttgcggtgag aaaaataaat catgtgtgtg tatgaaaaac aatcagtgct ctaaacattt      7200
     ccctaagtct ttccaggacg agacaattat ggatgagttt ggcttcactg tatatatgcg      7260
     ccgaaacaat ggacgatatg ttgttaaaaa tggaattaaa cttgacaata gatgggttgt      7320
     cccatacaac atgaaacttc tgaaaaaata ccaagcccac attaatgttg aatggtgcaa      7380
     taaatcgaac atgataaaat atcttttcaa atatgtaacg aagggatctg atagaactaa      7440
     agtatatttt gaaactactg gtaacacagc aaacaagcca accgacagta atgcagcacc      7500
     acgaaatgag atagacgaat acatcaatgc tagatttcta tccacttgtg aatcaatctg      7560
     gcgtacccta gagtttgata tccattatag ggttcctgct gttgagcgtt tggctgtgca      7620
     ccttccaaac atgaattttg tgcgatatca gaaaggaact gacctcaaaa aattacttga      7680
     aagccctgct gcgaaaaaaa accatgttga cagaatggtt tgaagctaat aaaaaacatt      7740
     ctaaggcacg acacctcaca tactgtgatt tcccgaaaga atggacctgg gacaacagcg      7800
     cacgctgttg gcgtccacga acaccggttg aaaaaatcgg tagaatgtac tatatcaacc      7860
     cagttgctgg agaactatac tacctacgga tgttgctgat gatagtaaag ggtgcgacgt      7920
     gctttgccga tataaggacc tacgagggtg ttgtttaccc aacttttaga caagcatgcg      7980
     aggcaagagg gcttcatgag aacgataacg agtggcactt gctctttgat gaggctattg      8040
     tgtctgcgtc ctcctaccaa ctaaggcagc tgtttgtaac cgtggtaatg ttttgttcta      8100
     ttggaaatgt gcgatctctt ttcgataaat attggacata ctttacagat gatatacaac      8160
     accgcgttag aaaaatgttg tcaaaccctt cttatgttat cccccatgac aggcttctat      8220
     ctcttttgat taaagaatta aaatctgttt ttgcaaatag cggcggtaat atagacgatt      8280
     acgacctgcc acagtcaaca gcacgcacag atgacgattc tgggaatagg atggtcaatg      8340
     aagagttagc tcttgatagt gttgctcttg ctgcccatgc tgattccatc ataccgaaac      8400
     taaactcgga ccaaaaaagg gtatttgaca caataatgtg ccgtgttaat gaatcgaaac      8460
     ctggtttttt cttcgtttat ggtcatggtg gaactggtaa aacattttta tggaatgcac      8520
     tgatttctaa agtaaggtcc gagaaaaaaa ttgtcctcgc agttgcttca tctggggttg      8580
     cttctctcct cttgccaaga ggacgcactg cccattctag gtttaaaatc ccgattgata      8640
     taaacgaaaa tagtttatgc actatcaaaa gagggaccat gcttgctgaa cttattcaaa      8700
     aaacatcact aatcatatgg gatgaagctc caatgactca taggcggtgc tttgaggctc      8760
     tagatcgaac tttacgagac ttgctttccg aacatgctcc ttccaacggt ttggtgccct      8820
     ttggtggaaa ggttgttgtc ctaggtggcg attttaggca gatattacca gttgtaagga      8880
     aaggctcccg tgcttctata atcgatgcat ctataacgaa ttctccgctt tggagtcatg      8940
     ctgttcttct aaaacttact gtcaacatga ggctcctaca gtgtaatctt ggtgaacagc      9000
     agcagcagga gctagaaaag tttgctcagt gggtcttggc gcttggtgat ggcaagttgc      9060
     ctgtgtcaaa aaggaacgat gaatctgaag caacctggat tgacatccct gatgatttgt      9120
     tgataaaaac aactggtgat aaaatacatt ctatagtaaa cgaagtattc ccaggttttg      9180
     catctaagta tacagaccgt tcttacctag catcgcgtgc tattgtatgc ccgaataact      9240
     caactgttga cgacataaat gaccgaatgg ttgatatggt acctggtgag gtgaaggaat      9300
     accttagttg cgacactatt tcgaaatcgt ctgagcacat accagatttt gatcttctgt      9360
     acccaaccga attcttaaat tcaattagcg ccaacaattt cccagcacat aaacttgcgc      9420
     taaaaaaggg tgtcacagtg atgttgctac gaaacctaaa tcaatcaatg ggtttatgca      9480
     atggaaccag gttgttagcc ctttctcttg ggcaacgact cttagaatgt cagatcttga      9540
     ctggaacaaa cattggagat agggtgttca taccaagaat agcgcttaca actacgagcc      9600
     ctaaatggcc tttcactctt cagaggaggc aattccctgt gcgtgtatgc tatgcaatga      9660
     caatcaacaa aagccagggc caaaccctta aaagggttgg cgtatacctt aaaaaagctg      9720
     tcttcacgca tggacagttg tatgttgcgg tgtctagatc gacttcaaga gacggcctta      9780
     ggattcttat tgagggtgat gatgaggcat gtagttccaa gactagaaat gtggtgtacc      9840
     atgaggtgct gcaaacagtg gatctgatgg tacatcatgt attgcccgat cttatagctg      9900
     ttacccatga atatcttaag ttccaacaat ctaacacgct gctacgattc tgttccgtag      9960
     gatgctgata cctagctgaa actcgagact ccgatgcttg ctgttgtttg atgttctgcc     10020
     tgattgtttt cttcatttct tcgtatctta ttcactgtgc cgctattgtt ttcattttgg     10080
     gtcacgtttt ttgtaagttt tccttgctgt tttgctttcg gtttttttaa aactacagca     10140
     aactggctac tgacaaattc tttgttaatt tccttgcaga tgggacacac cctgctctct     10200
     gatctctccc ttggtgacga caacgagcgc atttgtgttc gggtttcgcg attttgggct     10260
     ttctgtgacc aaaaggatga tgacaagatt cttcactttg gcttggtcct gattgatgag     10320
     aaggtcagat ctgtgcaacg attaccttga tttgtttagt tcacacaagg tgttttctga     10380
     ctttgttatt gccacagggg actagcattg ctgctcagat ttatccccca tgtgatgaga     10440
     tattcaggcc aatcatcact gaaggcaagg tgtactacat taagtacttc cgtgtgagga     10500
     agtgtaacag gcagtacaaa ccagtcgaca actgcatgtc catctatttc acaaggtgga     10560
     ctaaactaga ggagcgtgtc gatccaccag ctgagattcc tttgtatact tattcactct     10620
     caccatttgg cggtcttcgc tcacgtgttg gcaagaaaga ctcattcaca ggtagtctca     10680
     ctttactgtt gctaatgcat gcatagtact tcatgttatg ttaattggca aatggctgat     10740
     attgttccct ttatttgtca aaatcaaaaa gatatcattg gaattattac tcagctgtcg     10800
     cccgtgactc cgcttcaagg caccgtaaag aggagtgtct tcatccgcaa cactgagtta     10860
     gccccaactc ttgcatacta aaataaaata gattcatcag gactaactta atcttgattt     10920
     gtttatatgg ttccctttta tctgagctaa ccaattacca aaagagatac aactttcccc     10980
     ttatcttcac agagattctt aatacaacca ttatacctct aacacagcca aaagatacgc     11040
     cagatacatc tggccacctg cattttggtt ttcatgcatc tgttactgca tatttcctat     11100
     agcaatgcaa tcttgaatgt ggcgctttgg ggggaacgtg caacaagctt tcctgccgat     11160
     gaggtgtttg ttgctggtca gaaagaacca cagatagtaa tcttcgttgg cacccttgtg     11220
     aagggctatg gtaatgaata ttccaaatac tcaaccatgt ttctacatcg tagttccaat     11280
     ggttccatgc ttaatagaat atatgttctc taggcgatgt ctctttatca ggtaactcag     11340
     cctgcaagtg gtacattaac gcagacacac ctgaggtcat ctctctgaga aacaggtctg     11400
     tactaaggtt tctatacaaa gtgcatatcg ttttcttaaa tgtagcttgg cttatatata     11460
     catactaaca ctgtcgttat gtgtacagca tccaagcaac ctatagtcct atagagtgga     11520
     ctgatctacc tcctgcagca cctgcttata gcaatgctga gcccaagacg attatccaaa     11580
     ttaaggatct gaatcctttc gaattcaaga tacattgtgt gatttataca cttttgctat     11640
     ccaaattccc tagaatgagc tataaccatt gtttcatacc tcttttgtgc agaaacatga     11700
     attcttggtt actgttgtca tcaagaaaat agacatggag tactcttggt ggtacactgc     11760
     atgtgatata tgcaggagaa cagcaaggcc atatggaaac gcatacaagt gccagaatga     11820
     gtcatgccct cctcttgtgg gagcatcacc taggtcagta acattgcttt ccggaaccac     11880
     acttatgtca aaccaaagaa gataagccaa ttctaacatt actctatgtt tgcaggttca     11940
     agcttagcgt tgtggcaggt gatgacacag ctgacgctaa gttcgtgctc tttggccgcc     12000
     tagcacagtg tcttattggt cgatcagtgg agattctgtt agagggcaac gctgccggca     12060
     aggaggccat acccaaggag atcacaaatt tgcttgagga aaatttcacc tggaaagttg     12120
     ctattaccga gaataccatg tcttcaagca atgtctcatt ccaagtgaat atgattgtcg     12180
     gaaacggcaa cagccagaat cctgccatcc cacaatctcc atctgcatct caggcatcct     12240
     ccatggtacc ttctctagct ctatcaccaa gtgtaacaca tgaactctct gttggccagt     12300
     ccacagcagc atttgctcca tccattggat tcagtgatcc gcctgccact ccatcggctg     12360
     gattaaacag tccgttggtt gttggagcca aggacaaaaa tgatgatgtt gaatgccagt     12420
     ccaagactcc agttcaggtc cttgacgaag aagatgaggt tagcctgctt agcaagcata     12480
     cccaaccttt tattcctgag tctttctgtg ctaaaacttt cctcgctaat gatttagctg     12540
     atcctatagg atgatgacaa tttgcccctt tcccaaatgg gtggtcattc tgctactaag     12600
     aaaaccacat ccaagtccca caacaaaagg ttacagctct tctcagtctt ccatgctttt     12660
     agttaaagta gcctagcttt gctctgttta gctaactatg gttgcaaaac agggcaaggc     12720
     catctcctgg cactggcaca gctaagaagt tgttcaaaga aagtggtgac gataccgctg     12780
     atggcaggta ctacagattc agagtgatta gcattggcat ttgttttctt atatgcaaaa     12840
     tgacaactga ttgttgctag attatataat tgacaaattt tcatctgcaa ttcagcggcg     12900
     agaacaaggc ctgatgcagc aaaggaatgt gtacgctttt gttttgcaca gttgtatcag     12960
     actcggcatc ggtctcatgc tctgcttgca tgggtacctt aaccaagctt ctttagaacc     13020
     actctacagt gtttcgttgg ttaatattgt gccatgcatt tacaaactgt gctattttgt     13080
     cgctcgctat agacctttga gcatggttgt agccagacgc ttccttttgt aaagacttaa     13140
     cagcgaccct acgcattatg tggctaggat tctatgttat catgcatagc acacgataaa     13200
     cacgaatgct tgctgctgta cccagtatga tgttacttac gcaatagtag ctctgtgttt     13260
     cgggatacat atatattcca gctcagtgtg tatttcgact gttgcttgct tttagcctat     13320
     ttctaccttc gattcacaac ctgcgagtat tgattcggta cgcatcgagc aactattcac     13380
     atacactctc accgcattct atcccaatcc aacagcacac tgtgcaagaa tgctcatgag     13440
     aaggcatgta tctaactccc aaccaccagc cgtccggtct aggtgtgccg ccccatgcca     13500
     ccttgccagc acgtttgcat gcaagaaaag gctacacacc tacctattcc cttcgaatag     13560
     acagcacagg gtgctagcac ggtacatcct acactttctc tttatcctct tccatggtta     13620
     gcttctttgc ctgcaggaca cactgttgct gggtagagcc caaacatcga acaagagctg     13680
     cgctctgaag aagcctttca aggggagaaa acaaccgccg cttcgttcag gtattaatca     13740
     acttcggaaa ctcttcttca tgtggcttta tatgcatcag tgctatacat actatgttta     13800
     gaaaaacaaa gcgacaacaa acagattggt taaaacacca ttcatttcct cgctgtttat     13860
     ttgctatctc acattgtgaa atctttgctg cctattgatt tctggatggc tagatcaagg     13920
     ttcaacgctc tttcctggga aaaggagcag ctgaggatgg agtttggcta tggtggtgag     13980
     ctcagcgtag cacaacctcg gcggccttct tcctacggaa cacagcgacc attggttgcg     14040
     acaaagttct cagggtgtgg agagatatcg cagctgcttg ctgatgtcat ctatcagcag     14100
     gctgttgttg tgaaagtcct tggagctggt gatccaaaca gcacaaggat atctgctatg     14160
     gtaagtgctg tgtgcaggtg tgaaattgat gattttgctc tgctaccctt tcgtccaaag     14220
     atgtatattg ttctattcat ggatgctgac aagcaacaag aaagggctga aatggcctgc     14280
     aacaaaaaaa aattcacgtt caagacaact cgcctcgagt ttgagccttt caagatgaat     14340
     cttcatagtg ttacaaaccc actgcgtcaa agggttatac ttgcccttga aggagtgccg     14400
     ccggaatcat ggaataagca ggccataaca gagctaatgg acaacagttg catggttgaa     14460
     gagttgtatg gagagcacca tatacatgac ctttctgttt tcaagctagc tgcctggacc     14520
     accgactgtg accttatacc caaggcgatt agatggaaca ttgagaccaa acagggagca     14580
     cgagcatcag ccaatgttag ctggaaccac aacgcagctc actctctgat tctggtacac     14640
     atggaaaaac tattcgacta caccgacgaa gacagtggca gtgatagcga tggtgaactt     14700
     cttagacaat atgagcagca aaggcctcgc ctacctgttg tcaagacatt tacctgggta     14760
     tcctgtcaaa ttgacctaga caatggacca attgaaggtg gtccaccggc aatcctccca     14820
     cgtcggcttc ctctcgaatt tcgcaggcat ggccgtcagt agtcttccgc atgattcctt     14880
     gcctatttat ctatgttagt tgtgatgctt ccatgtatgc tgttataaca tgatctaaat     14940
     tatgtattgt ccttcgcgaa cagtgttcac atccatttca tgtatttttt ttcctgctta     15000
     atccattata gttactaatc acaaactgaa tggtctgaat gacaatgcta tagccaatga     15060
     aatgagtagg ctcttcaggt ctttctaatg ctttcacaga ttcttcttat caacttcctc     15120
     cttttaaagc accggtaggg cgccgcgaag cgcgccgcaa gttctag                   15167
//
ID   SZ-7IN      repbase; DNA   ; ORY   ; 10293 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice gypsy-type retrotransposon SZ-7.
XX
KW   LTR retrotransposon; GYPSY superfamily; internal region; SZ-7IN.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10293
RA   Jiang N., Wessler R.S.;
RT   "SZ-7IN: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 122-122 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 10293 BP; 2872 A; 2865 C; 2490 G; 2066 T; 0 other;
     gtggcgcgcc aggtaggggg atttggtact caaggttcta ctactatgtc atccagcttc        60
     gtcgacaaca acgtcaacac cagcctcagc caagcgctcc ctgcttcaac aatgctggta       120
     tggactcaag tcggcgaaat cgtcttcccg ttttacacca cgacgctgat ctcaaccggt       180
     cctccaatga ccggaaacga gaacgcagtg gctacaaacc aaggcgactt catgtcgaaa       240
     aatccacctg tcgaaacgga gaacggatca tcgacgacat ccaagctcgg gaaggattct       300
     gatacggcca aaccttgccc ttctgacatg aaccacgagc cggcaaagat gacttccgaa       360
     gccacaaggt cttggtgtcc tatccacaaa accaagaaac acaccctgca agattgctgg       420
     gttttcctca acgtccatgc tgaaattcgc gcatgcaaag aacgtggaat tcagcgtact       480
     tctccaactc gggatgtcta ttgtcctatt cacaagacaa agaatcacaa cctctcgagc       540
     tacaaagtct tcctcggcgc catgaaagct ccgtctcctg agtcatacgt ccccgtcagg       600
     gataacggca aggaacaagg agcgactcca gcctcagatc gattcgttga ggtaatcgat       660
     atcgatcctc atgaaccacc ggtcttacat cttctcgaag actatgggtc atcgacaatg       720
     agcgtgccgc aggaggtatt ggctatcgat gacgttggca cgtcaacgca agccaacgca       780
     gaagcggcga atcaatcgac tactccagcc caacacatca gggccgttca agccttacta       840
     agggaaactc cttacgatcc cgttctgaat gatgacctcg agcgttgaca gaacgactac       900
     gggaatcggt gaccaacctt agcaacgcgt ttgaagaagt cgctaccgca gcgcaccaag       960
     atcagccgcc aactagcgac gccaatggtg aagatccgga acggagggaa tcacctcaac      1020
     gagccactcc tccacctcgc ggcgctggcg atctccgaga tcaaatcaac ggccgccgag      1080
     aagcacgacg cacacgagac aatgtaaatc gctctcggcg tcatgtctct tcacggcgcc      1140
     atgataacgg aaatcgagga gaccgctcaa acgaggaccg ggatcacgac aaccaccgca      1200
     atcgcaacga tcgcgaatga cgggggccag acaatactgg tcatggccgc cgccgtaacg      1260
     acgacaataa tggagatcgg cgccgagaca acagcgagag acaacgatag gattcccgag      1320
     atccaggccg tcatactcgt aatcgtacgc cggaaccaag tgacccatcg tcatcatcat      1380
     catctgcgtc ctcctcatcg tcagacagac atccacgaag gacacacgac cgctgacaac      1440
     ccaccgcccc caacgctggg tgcagggctt tcggtcgttc cctacgtgat gtccgatggc      1500
     ctgagagatt ccgacccgga gcaattgaaa agtatgatgg gagcaccaac ccagaagaat      1560
     tccttcaagt ctactccaca gtactctatg ctgccggagc agacgacaac gcgctagcga      1620
     actatttatc aaccgcgttg aagggttctg cacgttcatg gctgatgcat cttcctccct      1680
     actcaatctc ttcgtgggca gacctgtggc aacaattcgt tgccaatttc caaggaacgt      1740
     acaagcgcca cgcgatcgaa gacaacctac acgcgttgac acagaactca ggtgaatcat      1800
     tgagggaata tgttcgacgc ttcaacgaat gcagaaacac aattcctgaa atcaccgacg      1860
     cttctgtaat ccgcgccttc aaatccggtg tcagagatcg ctacactacc caggaattgg      1920
     cgacaagacg catcacaacc actcggaggt tattcgagat cgttgagcga tgtgcccatg      1980
     tggacgatgc gctaagacgc aagaacgaca agccgaagac cgggggagag aagaaatcag      2040
     ccacagacgc atctgagtca agcaagaaga aaaatcgcaa aaatgggaaa aggaaagctc      2100
     aagcggaagt cctcgcagca gaatacgcga accctcccaa gcgcccagac ccacaaggca      2160
     gcgacacaaa gaaatcttgg tgccccatac acaagacgga cagacattct ctggaagatt      2220
     gccttgtttt caaaaagtcg ctcgagaagc acatggcgtt tgaaaaaggc aagcgagtac      2280
     gcattgtcga gaagaacgaa gagacggctc ctcacgaatc ggattatgcg tatccagact      2340
     ccgacctcca catctcacac attttcggcg gctccacaac gtactcctcc aagtgagaat      2400
     acaagaaagt ggaacgtgaa gtctgttcga catggcgggg ggctgcaccc aagatgaagt      2460
     ggtctaagca gaaaatagag ttctcgaaag aagaccaccc caagaccgcc gttatcccag      2520
     gacgatatcc gatcgtggtc gaacccatta ttcggaacat caaagtagcg cgagttctca      2580
     tcgacggtgg cagctcgatc aatcttcttt tcgctagtac tctagacgca atgggaattc      2640
     cgcaaagtga gttgacacca actgatcaac ccttccatgg aattactccc caatcatcat      2700
     ccagaccttt tggcaagatt acgttgcctg tgactttcgg ccaagccaac aacttccgaa      2760
     cagagcagat caccttcgat gtcgttgaat ttgatacagc ttacaacgcc atcatcggga      2820
     gaactgcact tgcgaagttc atggccatat ctcactacgc gtatcaagtg ctcaagatgc      2880
     cgggaccgaa gggaacaatc actattcagg ggaacacaaa gctggcagtg cagtgcgaca      2940
     agcggagcct cgacatagtc gagcaaacgc ccagcccacc cgccacaact gagccaccca      3000
     agaaagtgag caagacaaat aagacgccga agccggacgg cgccatcaag atcgttccac      3060
     tctccagtgc caatcccgac aagactgtca agatcggggc gacactaaac gagaaatagg      3120
     aactcgcgct catcaccttc ctccgcgata atgcctgcat gttcgtttgg caaccgtccg      3180
     acatgccggg ggtccctagg gaggtgattg agcacaaact aatggtgcga cccgatgcca      3240
     agtcagtaaa gcaaagactg cggagatttg caccagaccg gaaacaagcc atacgagaag      3300
     agctcgacaa acttctcaaa gctggcttca tcagagaagt acttcatcca gagtggctag      3360
     ccaatccagt catggtgcgg aaggccaatg gaaaatggag aatgtgtgtc gacttcaccg      3420
     acctcaacaa ggcgtgtccc aaggatcact ttcctctccc tcgaatagat caattggtgg      3480
     attcaacagc cggttgcaag ctattgagct tcctcgacgc ttactttggc taccaccaaa      3540
     tcagcatggc aatagaggac gaagagaaga cagcattcat catgccgttc ggggtatttt      3600
     gctatgttaa gatgccgttc ggactgataa ccgtcgggaa tactttccag cgcacggtcc      3660
     agggcgcact tagcaaccag cttggcaaca atgttgaggc ttacgttgac aacatcgttg      3720
     tcaaaaccaa gacaagcgac tcattgattg acgatctgcg ggaaatgttc gacaacctcc      3780
     gacgatatcg cctcatgctc aatcctgaga agtgcacgtt cggagtaccg tcgggcaagc      3840
     tactcggatt ccttgtctct ggcagaggaa tagaggcaaa tcccgagaag atcaaagcaa      3900
     tcgagaacat gaagtcgccc acgagactca aggaggtaca aaagctaact ggatgcatgg      3960
     aagcactaag cagattcgtc gctaggatgg gagaacgagc acaaccttcg ctctattgaa      4020
     gaaacaagac aaatttatat ggacacagaa agccaaagag gcatttattg cactcaagcg      4080
     ctacctatca aacccccctg tacttgttgc tccccaacct aatgaagaat tattcctcta      4140
     tattgccgcc acgccatatt ccgttagcac tgtcattgtt gtcgagagag agaaagtaca      4200
     gcgaccagtt tattacatca gcgaagctct ccatgacgca aagacaagat acccacatat      4260
     ccaaaaaatg ctttacgcag tcatcatgac atcaaggaag ctgcgccact actttcaagc      4320
     tcacagagtc acagttgtat cctccttccc ccttggagaa gttgtgagaa acaaagacgt      4380
     tgtcggccgc attgcgaaat gggtagtcga gctaagccaa tttgatgtcc actttctgcc      4440
     gcgaatagcc atcaaatccc aggtactcgc cgacttcgtt gccgattgga ctatgccgga      4500
     caacaaatca gacaaccaag gcgacaacga aacatggaca atggcgttcg atggcgcact      4560
     caacagccaa ggagcagggg caggatttat cttgacgtct ccttccggag atcaattcaa      4620
     gcacgcaatc cacctcaact tcagggcgac caataacact gcagaatacg aaggactact      4680
     cgccaggata cgagctgcag ccgcacttgg cgccaagcga ctaatcgtca aaggggactc      4740
     cgagctagtc gcgaaccagg tgcacaaaga ctataaatgc tctaaccccg agttatccaa      4800
     gtatctcgta gaagtcagga agctagagaa gaggttcgat gggatcgagg tccgacacgt      4860
     ctatcgcaag gacaacgtcg agccagacga gaaccactcg aacccggcac ctttctcgat      4920
     atcctgacga agccatcggt gaaagaagtt agcggcgaag ttagcccgaa cacccccgac      4980
     atcagctcgg aggtcaccga ggcagaacgc gccgttgctg acatcgaaac cacagacgac      5040
     tggcgcatcc cattaatcaa attcatcagc agcgaggagt tgcccgagga cgatacagag      5100
     gccgagaaaa taacccgtaa agcaaagatc tactgtatgg tcggtaacga tttatacaaa      5160
     aaagcgctaa acggggtact tctcaaatgc gtctctactg acgacgacag acacctcctc      5220
     ctcgacatac atgaaggcat atgtgggtca cacgccgccg gtcggacatt ggtcggcaaa      5280
     gcttttcgac aagtcttttt ctggccaacc gcccttaaag atgcattcga catggtccag      5340
     cgatgtgaag cctgtcaatt ccacagtaaa cacacaaagc tacccgcgca agcgctccag      5400
     actatccctc tgacttggcc gttctcgtgc tgggggctag atatacttgg gccattccca      5460
     cgaggacagg gcggctacag attcctattc gtggcgatcg acaaattcac caaatggata      5520
     gaagcagtgc ccacggggga aatcaaggcc gacaacgcca tcaaattcat cagagggata      5580
     ttctgcagat acggactact gcaccgcatc ataaccgaca acggctccca attcatcagc      5640
     accgacttcc aagattactg catcgggttg ggagtcaaaa tatgtttcgc ctcggtctct      5700
     caccctcaaa gcaacgaata agtcgaaagg gcaaacgaca tagtactaca agggatgaaa      5760
     acccgcgtct acgacaggct catgtcacaa gacaaaaagt gggttgaaga actcccatca      5820
     gtactatggg ccgtacgcac cacaccgaca acgtccaata aggaaacacc cttcttcctc      5880
     gtgtacggct ccgaggccat gctccccggc gagctacgac atcagagtac acgagtacag      5940
     aagtattcca acgagaacca ggaggaacag tgagacatcg atgtaaatct tctcgaggag      6000
     catcatgagc gagttgccgt ccgagcagcc agctatcaac agtccctccg ccgttatcac      6060
     gagaagcgca tccgagcacg catactttcg atcggcgact atgtcctccg acgagttcaa      6120
     acccaagcag ggcaaaacaa actctcacca aaatgggaag gaccttacac aatcacacaa      6180
     gtcttgcggc caggcgcatt caaaatcgca gacggtgatg gtcgcgaatt agcaaattct      6240
     tggaacattg accaactacg taaattctat gtatgagtca ataccactgt acctgtaagt      6300
     acccttatag tatcaataaa gcctatttct aggtcccata tcacaatcaa agtgttttca      6360
     cccgatgatc ccttactctg atgacaccta gcgttgaaac ctgtccttat gtccctttac      6420
     gccgtctcga caaggcctcc gaggaaccta agggatcttc ggctggggat gcccagagcc      6480
     gataaggcct tgtcagatcc tgtagagaca aaagaccatg taagatctgg tcgtgtaaga      6540
     gttctcaccg tgcgtattaa ccaagccgtg aaatcggaaa tcaattttcc aaactcacgg      6600
     ctgggggcta ggatcagagc ttattcaacc aaggcaggtc aatggtccaa gagccttatc      6660
     ctccgagaaa attcctccga cgacaaggct gggggctagg gagagtgtac gactcaaacg      6720
     gctgaccaaa gtcattaact gagaacacac tcttacacac gacatctaga gtaagataca      6780
     tttgtttaag gaatatttct ttattcacaa aataattctt acagttttta cataaatttt      6840
     ccactacatt acatctttcc ctaagatatc tgtgacaggg catgagtact accaagaagg      6900
     ccaacgctag tccatagact ggaagatctt ctcggccagc ggcgacatcg acctcgccag      6960
     atggtctatc tccgccggag ttctccgaga acgagcaaaa ccatggcgga gaaactcgag      7020
     gtccaagcgc gggcggtgat ctcgtaggca agccagcatg tgcactccgg cgtatcggct      7080
     cactcgacga cactcttgct tcaaggcctc gtcgatatgc ttgccgatgc catcaagttg      7140
     ggcacaggcc ccgtttagcc aagagatgta cccagccgcc gactcctcgg gatcatcgcg      7200
     gactactcga agttccctgc atactctggc catggaggca cagcaactcc tcaagtaaga      7260
     gttgaaccac acctcgcgac ctcggagcgt ctccacaacc tgctctttct tcacggccag      7320
     catggttctc tcaagttccg ccacttcaaa tttcgtcttc cagtattgga tacgacgatc      7380
     ttgatttgca agggcaccct cgagatctgc taaatgtgat gaccactaag acaagttgga      7440
     tacctccttt acaacataaa taacctaatc aagaggtcac taagaggtga aaaggctact      7500
     cacttgaggt ggccgttgcc atcccggcct tcgcatcaag agtttgatcc acattgtcag      7560
     acgaaacatg tggttcaaaa tcgagtaccg gaatcatcgc cagtgactca ggctgcccgc      7620
     gctgctggac atcctcatca tcaacatctc tataatggac aaaaactccc gagatcaaca      7680
     tacaaaattg gacaagggtg gtaatcgcac gaacgaaggc ggccagagtt caagatttac      7740
     acaatatata acaaatacaa gaagtcctac tcttcaaaaa ggggcagaac agactccccc      7800
     agatcactga cttcttccat cacctcctta cgcgtgtcgc ttgccgcccc ctgatccaag      7860
     atctcgcgca gatcgagttc aggacgcgac aatcttacac acgcgaggac gtgacacgct      7920
     ccggtgtaga tgccgttcga cgtctcctcc gcgatcctgg ccgcatgctt ggaggggatt      7980
     ttccccatcg ccgtcgccag ttccgcaaga gaggaagtca gcaaaaactc gtcgggattc      8040
     gccgggatcg tggacttgac gccgcactcc tcggcgagct gatggaggcc agtgtaggtg      8100
     acccgcaacg agccatggat ctcggagaga ttgttcccga gttccgacat tcagtcctcg      8160
     agccccttcc gttgatgctc gttgccggcc accaactccc tcatcttcgt gaggtcctca      8220
     cgggcttcag ctagctcgcg caccaatctc tcagcacgcg cattcgccgt cgccgcttcc      8280
     gacctcgcct ccgagatctc gctgccgatg ccgcgagcac cagcttcgag aagacgcccc      8340
     atctcgactt ggagctcctc ccaggtgaga acggccgctg gcagaccacg acccgcagcg      8400
     ggattgttga tggggccact aggcgtcgcc tcccggctcc cggtcatggg cacgacatct      8460
     gtcgaggccg tggcaggtga tgcgctagaa gctcccccgg acttggcccg tgcagccttc      8520
     gcccgcgcct ccctacggac aaccacgaat caaacaccat ttgaacgaaa agcacgagaa      8580
     tccaagaatc tatttactta cttctcgccg atcgttacaa tgcgctgtcg tcgtggaggt      8640
     ggaggggacg cgtctgaagc ctgaaagaca atcaatacag agtaagaaga aaccctcctt      8700
     gctgcacgat ctgacgacaa gatgataccg aggggggtcg ctgccttgcg gcaatgtccg      8760
     agtacagacg agaatttcct cgccttggtc gggactttgc caccgctagt ggtggccgca      8820
     tcagatgcct ccttgacaac cttctccttt agagatgtcg ccacctgatg gtccgcgagc      8880
     ggcccgatga tgtcagtcaa aggaagggcc tacgcttaat caggtcataa ggtgatttcg      8940
     aaaggagaat acgagatgct tatcaaatac acttacgttg atggcttcat cgcgttccgc      9000
     cgcccccttt tcacaaaggg gcacggggat gtcgctagcc gtggtcggac cgctgatcat      9060
     cacttgaccg acgcgccgct ccatagcttc gctgcttaga cctgttaaac ggaaaccaac      9120
     ttttgataag tcaagaggaa cgcgactaca agcacgccaa gatgaatacg agaaagatac      9180
     cccgaggaga aacccgggtc gcgtcatccg acccgaaata gttataggct ggatgggccc      9240
     gagcctggag cggctggatc cgcctaccga cgaagtctgc agcgacttca tatcccgaca      9300
     agccctgttc tcggagatca tcgatgatgt cgataaacga ctgaagagag gggctcaaag      9360
     ggggcttggc ggtccaggcc ggaatcttgt ccggttgatc ctcgggaaca acgaagacag      9420
     ggttcgagtc cttgatctca agatagaacc acctgttccg ccacttactg cgggaagaag      9480
     gacactggaa ggggatataa cgcgacttca tgccatcacg aagtcggaac ccgacgcaac      9540
     cagacaccct attggattcc atccaacgca gttcatagta gaaacggaag agatcgagaa      9600
     aaggctctac cccaatgtag gcctcacaga gatgaacaaa gatactaaga aaggcgatgg      9660
     aattaggatt caaatggaga agagaaagac catagaaatt caacaccagg agaagaaact      9720
     cggaaggtgg aggaagaaaa ccgcagagaa cgtaatcttc gatcacaacc atgcgaccta      9780
     agaggggctg aggatcagta cctcctactt ctctctccat gtctccacgg ccgggaaggg      9840
     cgccgtcctc ctaaaggttc ttcaacgtcg cgctggtgga agacgactta ccgagatcca      9900
     ttgttgttcc aagatcgccg gaaaacaagc ctgagttggc gaactagggt ttcttgcggc      9960
     ggcggagaag gcaaggagcg ctggcaggtg gtgtgtgttc aacaaggttg gcagacttca     10020
     aaatgagctc ccaaaattcc tttaaataag cacactacca acggtgcgaa ttccaaggaa     10080
     cggagagaga tccccgccgg aaatctctgg gcccgttacg cgcggtagtt ttctggactt     10140
     cagttcaaaa ttcactcgtg accgttgggc ttcaaacggc atgctcgact acgttctatc     10200
     tccgcggtcc tcgcgccaag aatgacaacg ttctcgacac ccgaagtcat aaatggttgc     10260
     acgagttcat tttaagcaga agtcgggggc tac                                  10293
//
ID   SZ-30       repbase; DNA   ; ORY   ; 6340 BP.
XX
AC   .
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Rice retrotransposon SZ-30.
XX
KW   LTR retrotransposon; SZ-5; SZ-30.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-6340
RA   Jiang N., Wessler R.S.;
RT   "SZ-30: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 87-87 (2002).
XX
CC   [1] (Consensus)
XX
CC   SZ-30 has 1198bp LTRs. LTRs are similar to SZ-5.
XX
SQ   Sequence 6340 BP; 2147 A; 1568 C; 904 G; 1721 T; 0 other;
     tgtaggatcg aacacaagca accaagccta ccagaagggg gtgaatggta gagaaaaaca        60
     aaaacccaaa aacttttaac ggaaataaaa gttaccctca aatcgatgga aatcttgacg       120
     tagttttatg gccgccggtc ggaccgctcg tacgccgcca gtcgaaccgc ctccctgccg       180
     tctgaacccg aagaaacaca aatcgaagaa ctctcaaagt agatgaaaac tttatttctt       240
     ctctctgtgt ttacaaagtg caacaacagc actccttaca aaaatctcga ctaaactcga       300
     aacccgaatt aaactatcaa ctcaattgct ctcaaagcga taccgggaag gctcacgctc       360
     cctctctatt tataccaaaa aaccccctac tcaaagtagg tgtaaaactc ctattcacaa       420
     taggactcaa tccctcaatt tctaaacctt ttacaattta ccaaaactcc cacagccgca       480
     gccaaccgca tcggactcga tctcctgcgc ttgctcctgc ttgggcctat cgcacgtggg       540
     ctgacgtgcc gctgctcctg gaccggctcg gcctccagcc agctgccacc gaagcccacc       600
     gagccatcac acatgcatgg cacaacatgc atgcatcaat caccatacat acatgcatat       660
     gctacgacca gcatacacac atatatgcat acacgacctg ctacaataac tcgaagcact       720
     gtagcaccat atacttctct ctaatttctt ccaatctcct tcgcgaacac cggcacttgc       780
     acgcacacct cgtgaagccc gttgcgaaga tctctcccac acggtgtcca ttcaccatgt       840
     gtcatctcgt atccaatttc gttactcggt atccttaacc gtctgaacct caactcctcc       900
     atgagtttag tcccgatccc caccgttgac cgaagttgac ctccaagaat ctggactcta       960
     gtcaccttct cacatggtat cccgaccgca ctagacctct gttcctccct gaacatagtc      1020
     ccagtcctca ccattgacca aggctgacct caagtcacct gcacacaatc agacaaaaca      1080
     accgtttctg ggcacagata tcacaaccta acccacatta gtcacacgca ctcacaccaa      1140
     cattcacaca aactctcaaa ccaattcttt aattaaatca tttgcatagc caattgttca      1200
     tcacaaatat taatcatgac aatgatttca caatctcccc cttgatgaac acattggcaa      1260
     catcaacaaa atgcaatttt ttgtttatga aaaataaaaa caaaaatcac aaaagtgaaa      1320
     agaaaaactc tccccttttt aaaagaaaga atttctctca tcaatttgca atcaaagtac      1380
     aaaattgact atttttaaaa tcgaaacaat tcaattctcc ccctttcaag aagcatgcat      1440
     tttgtatatt tctccccctc tgacaatgat ttcatcaaga attcaaaaga gaaataataa      1500
     caataaaaca caaatgaaat tatgtcatga ttgccacttg gaataaccat ttttagtttt      1560
     tatattttct caattttttc cgagagcttt gaaatgtacc aaaagcaatt catgatcatg      1620
     tgttgcaata taagggagat aaattcatca gctagttaac aagcatgcac tatagtataa      1680
     acatgaatca aagatattac aattaagctc aaatcaacaa taaggattca tgatttcaaa      1740
     tgatttataa tgcaatatat tcacaagcac ataggttgaa aaacaaacaa tatacatata      1800
     tacctattgc atttatcact ctttctcaaa ttagctttag cacaaaacaa tcaagagaat      1860
     tttttaactt tcatttgagc ctttttgctc actttttttc tctcaattat ttcgggtacg      1920
     tccttgtcgt caagactgtt tccaaggatt cggtattcat tttttttctc tcatagatat      1980
     tttttattct cttgcacaat gagcaaataa aagctatttg aggaataaca attcaataaa      2040
     gcatatacat aagcatttat aaatcaaacc atatgctagc atcaatattg catattttct      2100
     taattcaagt aaaagaatta gtgtcatgca tcatctcact taaaagcaat atctaatcct      2160
     catataaaga ctaaaatgca tacaagctaa catagcaaca aatagacctc aattattttg      2220
     ctagcatgca caagaatata ctagaggtat aaaacaaagc tcttcttttt ctcattttta      2280
     tttattttca aaattagagc aaatgcataa aaataaacat gaatgcatga aaaagcataa      2340
     actccccctc aaattaacct ccaattctcc ccgaacaaaa atcaagaaga aatcaatgat      2400
     tttgaaaaag acatccaatt gccaatgata tcaccaaggt tctcatgaat cgacatatat      2460
     ccacatgtat taaacaaaac tactatctca aacactagca tatgaaaagc taataatcaa      2520
     gagagtagaa caaaattata tcaatccaaa aattaccttg atgttacctt gtaaagcaat      2580
     cgccgtcaca acattgaacg ctcatgggga gtatgccacc aaaataccta caaatgagaa      2640
     gatgtcaagg cctccgtgtt ggggttagaa ataagaaatt ttggaatcca acactgagtc      2700
     acacgaccag tagaaccagt aggtacatat gcactaacaa aatcagaacc agacatacct      2760
     gaaaacttac cttttcgttt cacaaaagac tgatttgaat tacgcacaaa atcaccccga      2820
     ggccggtctg accgccgctg tccctgcggt ctaaccgggc ctagctgccg gtctgaccgc      2880
     cggttcaact gcggtctcac cgtgctcctc gaactaaaac ccgatttttg ccaacgtcgt      2940
     tttgcaaaag caatttctct ttcctttttc tgtttatggg caagtctaaa acaaaaacca      3000
     accaaatatc catcttttcc acaaaaagaa caagtgtact tctcacgaca agtttggtaa      3060
     gtagatggtt ttgaaattga tggttttgca acaacagaag attttgcatt cacaacattt      3120
     gattttgaag aagatgcatt caaagaagac atgatgccag cagatttaaa cacagtgttc      3180
     ttaggctcag tttcaatcaa aatttcacct ctcctagcag cacccaaaac agtaggagga      3240
     tgtctagcat gataagcata agaatcaaaa cctaaaccac gattgtgtgt gctaacttta      3300
     gattgatcaa gaatcatgtt gaggttcttt ttaccatcag aaaatctttg caaagaactt      3360
     ttcaaataag aaacctcttg agtaagaata gcacaatttt tgcaagcatc caaaaaacct      3420
     ttttgctttc tacaagttga gcaagaaaac acctcatctt gtttaacaac ttcttccatg      3480
     tgtttaacac gccctatagc atctttcaac ttcatctcat tcaaaacaca ctttgaacaa      3540
     tcttgagaaa tcaaaacacc attgttttgt tttgccttat ttgcacatga agcattgacc      3600
     aaagaacttg cataaaaaac aactttgtat ttttttcaaa acattctttg tcaaaatcaa      3660
     ctcatcaaca acacgagcat gtaaagcaaa tccaagagca aaagaagatt ccaacttttt      3720
     agatttttca atctcaaatt ccaatttttt gcaattaaca gaattgacat ctcgcaaagc      3780
     attaatttca gaaaataaaa cttcacaaga ttgacaatta tcatcatcag gaatcgaaga      3840
     ttttaatcta tcaatttcag catttagaat ctcaatagtg tgatccttct catcaagcac      3900
     aatagaacat gtttgaagtt tcttagcaaa tttgtaagca gcaagttcta attgatcata      3960
     actaagcttt tcttcattat catcgtcaga ttcatcaaca gcagaactag cattacgagc      4020
     aataaaatct agatcaacaa cttgcttacc tttgccctca tcttcatctt cagatccatc      4080
     aagaactttt atgagttctt gaactaacca ctgcatacaa tgcttcttct tctccttctc      4140
     cttcatgttc ttcttcttgt tcacgtcatc ctctttgact cttccatcat cttcattctt      4200
     tcctctccca agcttaggac aatgcgaacg aagatgatta agtgctccac actcaaaaca      4260
     acgattcggt tctcctcttt tcctgttcct aacatttttc atagctcgag aaaatctgtt      4320
     agatagcaaa accaaatcat cctcgaactg ttcgagttga tcatcggata tggcattaaa      4380
     taaagcaaga acagaagact tcgatgaaga agcaccaaca tccaaaaaag ttgaagacga      4440
     aaccaaaaca ctagacttag aatcaccttt acgagaacga atattcatct catgagtttt      4500
     cagttttgtg taaagcgaat ccaaagtcaa agtagacata ttcacagact cctgaataga      4560
     tgtaactttc atctcccaaa tagacatgtc aagaccattc aaaaagtggc gaaaaatctt      4620
     agattgtgga taattagcat cataagaaga atcaacagat ctaagatcac tcaaaatttt      4680
     attaaaccga gaaatatagt catccaaagc ttctccaggt ttcatctcaa atttaatgta      4740
     ctccgttttg aaaagatcac gacgaagttc ttttatatta tttgttcctt gatgaaaatt      4800
     actcaaaaaa atccaaatct catgagcagt ttgaagatga gcaacacgat cataatccga      4860
     acgagaaatc ccactcaaaa gaatattgcg agctttgcaa ttttgttcaa aagcagtttt      4920
     ttcagcagca gtattaatag cttcaggaat cacataagca tgagaaactt ttctctaaat      4980
     atcataatct tcagccataa tgtaagattg catcctacta caccaatgag aaaaatccgt      5040
     tccatcgaaa acatgaggtt tagttgaaaa cctaacagga gcagccatgg caaaaacttt      5100
     agatcgataa aaatccaaag aagaaaacga ggctatgata ccacttatag gatcgaacac      5160
     aagcaaccaa gcctaccaga aaggggtgaa tggtaggcaa aaccaaaaac ccaaaaactt      5220
     ttaacggaaa taaaagttac cctcaaatcg atggaaatct cgacgtagtt ttatcgcccc      5280
     cggtcggacc gctcgtacgc cgccagtcga accgcctccc tgccgcctga acctgaagaa      5340
     acacaaatcg aagaactctc aaagtagatg aaaactttat ttcttctctc tgtgtttaca      5400
     aagtgcaaca acagcactcc ttacaaaaat ctcgactaaa ctcgaaacct gaattaaact      5460
     atcaactcaa ttgctctcaa agcgataccg ggaaggctca cgctccctct ctatttatac      5520
     caaaaaaccc cctactcaaa gtaggtgtaa aactcctatt cacaatagga ctcaatccct      5580
     caatttctaa accttttaca atttaccaaa actcccacag ccgcagccaa ccgcatcgga      5640
     ctcgatctcc tgcgattgct cctgcttggg cctatcgcac gtgggctgac gtgccgctgc      5700
     tcctggaccg gctcggcctc cagccagctg ccaccgaagc ccaccgagcc atcacacatg      5760
     catggcacaa catgcatgca tcaatcacca tacatacatg catatgctac gaccagcata      5820
     cacacatata tgcatacacg acctgctaca ataactcgaa gcactgtagc accatatact      5880
     tctctctaat ttcttccaat ctccttcgcg aacaccggca cttgcacgca cagctcgtga      5940
     agcccgttgc gaagatctct ccaacttcgt cacctggtat ccttgactgt ctgaacctca      6000
     actcctccat gagtttagtc ccgatcccca ccgttggccg aagttgacct ccaagaatct      6060
     ggactctagt caccttctca catggtatcc cgaccgcact agacctctgt tcctccctga      6120
     acatagtccc ggtcctcacc attgaccaag gctgacctca agtcacctgc acacaatcag      6180
     acaaaacaac cgtttctggg cacagatatc acaacctaac ccacattagt cacacgcact      6240
     cacaccaata ttcacacaaa ctctcaaacc aattctttaa ttaaatcatt tgcatagcca      6300
     attgttcatc acaaatatta atcatgacaa tgatttcaca                            6340
//
ID   RIRE5-LTR_OS repbase; DNA   ; ORY   ; 995 BP.
XX
AC   AB105803; AB105803.1; GI:29027728; VERSION;
XX
DT   11-JUL-2003 (Rel. 8.06, Created)
DT   11-JUL-2003 (Rel. 8.06, Last updated, Version 1)
XX
DE   Oryza sativa retrotransposon RIRE5: Long Terminal Repeat.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; LTR; RIRE5;
KW   RIRE5-I_OS; RIRE5-LTR_OS.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-995
RA   Ohtsubo H., Ohtsubo E.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (13-MAR-2003)Hisako Ohtsubo,
RL   Institute of Molecular and Cellular Biosciences, The University
RL   of Tokyo, Section of Chromosome dynamics; Yayoi 1-1-1, Bunkyo-ku,
RL   Toukyo 1130032, Japan (E-mail:hohtsubo@ims.u-tokyo.ac.jp,
RL   Tel:81-3-5841-7854, Fax:81-3-5841-8484).
XX
DR   Genbank; AB105803; Positions       1     995.
XX
SQ   Sequence 995 BP; 254 A; 228 C; 238 G; 275 T; 0 other;
     tgttagatta atgggctagg cccaattaaa tcctaataaa ttccattggc ccacattaag        60
     tgctatgggt aataatacca ccttggaaat ctaagtgaag aggtctcaac ttaaatacgg       120
     agctagtgga gagtctctgt tgaccggttg agatggtgcg cggacaacca ggcggggcga       180
     ggcgaggcga ggcagacagc tgctgctgcg ctctctcgtt ttgtaacgga cggtaataaa       240
     cacggagaat tgatttcgta tcaatgaacg cgtcggttac ggaattaaac gtcgtgaatt       300
     gattccgtcg gttacggaat taaacgccgt gaattgattc cgtattaacg agcgcgtcgg       360
     ttacgaaatt aaacaccgcg gttgatgact ccgaacgtta ctctcgcgct cgcatatata       420
     tactccgcag cgaccagaag gacggaggaa gttcttcacg actcttgcac ttcgagttcc       480
     tcctcctctg ttcctgagct gcaaaatcct tccccggttc tgttcacctg cgcgcacagg       540
     tgtacgggac gagcaggtgc ctccgaaact ccgtccgctt gagaacttgc acgggtaggc       600
     gggcgatcaa gtttttgggt agcgcttcaa gcgcgactgc tcttgttctt cgcggctact       660
     actgctgcat cgacgccttc accaagatgt cgacggagat tggagacaag aagatgaacg       720
     acatcaacgg aggcaatact gcctcaaaat ccagcggtgg gacgttctcg gggtatactt       780
     tcattctccc gattctatta gatgtttctt tgttaatact cttcgcaatg gcagcattgc       840
     gttactatgt aaatgttgat gcttatttca tattaagcat actcaagttg tatacatcta       900
     gcactgtcac tagatctact catattgcaa atgtcatgtt tattgtctta atattttgga       960
     ttaaaatatg ccgaattatg accaaatttc caaca                                  995
//
ID   OSTE24      repbase; DNA   ; ORY   ; 683 BP.
XX
AC   .
XX
DT   08-NOV-2002 (Rel. 10.03, Created)
DT   21-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Rice putative non-autonomous DNA transposon OSTE24 - a consensus.
XX
KW   DNA transposon; Interspersed Repeat; non-autonomous; TNR3;
KW   OSTE24.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-680
RA   Jurka J., Drazkiewicz A.;
RT   "OSTE24: a putative non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Repbase Reports 2:(10) p. 19 (2002).
XX
RN   [2]
RP   1-680
RA   Jurka J., Drazkiewicz A.;
RT   "OSTE24: a putative non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Direct Submission to Repbase Update (05-NOV-2002).
XX
RN   [3]
RP   1-683
RA   Gentles A., Jurka J.;
RT   "OSTE24 transposon, improved consensus sequence.";
RL   Direct Submission to Repbase Update (05-APR-2005).
XX
CC   [3] (Consensus)
XX
CC   Imperfect palindromic sequence.
CC   OSTE24 is homologous to TNR3 over part of its internal sequence.
XX
SQ   Sequence 683 BP; 247 A; 96 C; 91 G; 249 T; 0 other;
     gaattttttt tatttataca tttttttatt aaaatattta caaaaataat tttttgtttc        60
     gaaaatttac aaatctaatt gcctgccgcc cttaagaagg gcgattttta aaaatcgccc       120
     tctcaaaggg cggcaaggga cctaaataca aaatttttat ttgtgttcaa acccttccca       180
     ccggttttaa ttgcttaaaa actaataatg cttattcgat actccaaatg attttaaatg       240
     gaaaagtgat aaactacaaa gttatagatc tcatcaagat ctacaacttt atataaagtt       300
     tatctccatc caatgtcgtt tgaaatgtag atctgagatt ttttaaaatg tgttttatat       360
     tttgtaacga atatttggat atctaaaaca tcttaaatga aaaagttatt aactacaaag       420
     ttgtagatct ccttgagctc tacaattttg atataaagtt ttatttcatc tgactttata       480
     taatataatt ttaaattgta aaattataga gctaacaagt tatgctggaa aatttacatt       540
     taggtccctt gccgccctgt ggaagggcga tttttaaaaa tcgccctccc aaagggcggc       600
     aggcgattag atttgtaaat tttcgaaaca acaaattatt tttgtaaata ttttaataaa       660
     aaaaagtata aataaaaaaa att                                               683
//
ID   SZ-7IN      repbase; DNA   ; ORY   ; 10293 BP.
XX
AC   .
XX
DT   08-JUL-2004 (Rel. 9.06, Created)
DT   08-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Rice gypsy-type retrotransposon SZ-7.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   GYPSY superfamily; SZ-7IN; internal region.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10293
RA   Jiang N., Wessler R.S.;
RT   "SZ-7IN: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2(7), 122-122 (2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 10293 BP; 2872 A; 2865 C; 2490 G; 2066 T; 0 other;
     gtggcgcgcc aggtaggggg atttggtact caaggttcta ctactatgtc atccagcttc        60
     gtcgacaaca acgtcaacac cagcctcagc caagcgctcc ctgcttcaac aatgctggta       120
     tggactcaag tcggcgaaat cgtcttcccg ttttacacca cgacgctgat ctcaaccggt       180
     cctccaatga ccggaaacga gaacgcagtg gctacaaacc aaggcgactt catgtcgaaa       240
     aatccacctg tcgaaacgga gaacggatca tcgacgacat ccaagctcgg gaaggattct       300
     gatacggcca aaccttgccc ttctgacatg aaccacgagc cggcaaagat gacttccgaa       360
     gccacaaggt cttggtgtcc tatccacaaa accaagaaac acaccctgca agattgctgg       420
     gttttcctca acgtccatgc tgaaattcgc gcatgcaaag aacgtggaat tcagcgtact       480
     tctccaactc gggatgtcta ttgtcctatt cacaagacaa agaatcacaa cctctcgagc       540
     tacaaagtct tcctcggcgc catgaaagct ccgtctcctg agtcatacgt ccccgtcagg       600
     gataacggca aggaacaagg agcgactcca gcctcagatc gattcgttga ggtaatcgat       660
     atcgatcctc atgaaccacc ggtcttacat cttctcgaag actatgggtc atcgacaatg       720
     agcgtgccgc aggaggtatt ggctatcgat gacgttggca cgtcaacgca agccaacgca       780
     gaagcggcga atcaatcgac tactccagcc caacacatca gggccgttca agccttacta       840
     agggaaactc cttacgatcc cgttctgaat gatgacctcg agcgttgaca gaacgactac       900
     gggaatcggt gaccaacctt agcaacgcgt ttgaagaagt cgctaccgca gcgcaccaag       960
     atcagccgcc aactagcgac gccaatggtg aagatccgga acggagggaa tcacctcaac      1020
     gagccactcc tccacctcgc ggcgctggcg atctccgaga tcaaatcaac ggccgccgag      1080
     aagcacgacg cacacgagac aatgtaaatc gctctcggcg tcatgtctct tcacggcgcc      1140
     atgataacgg aaatcgagga gaccgctcaa acgaggaccg ggatcacgac aaccaccgca      1200
     atcgcaacga tcgcgaatga cgggggccag acaatactgg tcatggccgc cgccgtaacg      1260
     acgacaataa tggagatcgg cgccgagaca acagcgagag acaacgatag gattcccgag      1320
     atccaggccg tcatactcgt aatcgtacgc cggaaccaag tgacccatcg tcatcatcat      1380
     catctgcgtc ctcctcatcg tcagacagac atccacgaag gacacacgac cgctgacaac      1440
     ccaccgcccc caacgctggg tgcagggctt tcggtcgttc cctacgtgat gtccgatggc      1500
     ctgagagatt ccgacccgga gcaattgaaa agtatgatgg gagcaccaac ccagaagaat      1560
     tccttcaagt ctactccaca gtactctatg ctgccggagc agacgacaac gcgctagcga      1620
     actatttatc aaccgcgttg aagggttctg cacgttcatg gctgatgcat cttcctccct      1680
     actcaatctc ttcgtgggca gacctgtggc aacaattcgt tgccaatttc caaggaacgt      1740
     acaagcgcca cgcgatcgaa gacaacctac acgcgttgac acagaactca ggtgaatcat      1800
     tgagggaata tgttcgacgc ttcaacgaat gcagaaacac aattcctgaa atcaccgacg      1860
     cttctgtaat ccgcgccttc aaatccggtg tcagagatcg ctacactacc caggaattgg      1920
     cgacaagacg catcacaacc actcggaggt tattcgagat cgttgagcga tgtgcccatg      1980
     tggacgatgc gctaagacgc aagaacgaca agccgaagac cgggggagag aagaaatcag      2040
     ccacagacgc atctgagtca agcaagaaga aaaatcgcaa aaatgggaaa aggaaagctc      2100
     aagcggaagt cctcgcagca gaatacgcga accctcccaa gcgcccagac ccacaaggca      2160
     gcgacacaaa gaaatcttgg tgccccatac acaagacgga cagacattct ctggaagatt      2220
     gccttgtttt caaaaagtcg ctcgagaagc acatggcgtt tgaaaaaggc aagcgagtac      2280
     gcattgtcga gaagaacgaa gagacggctc ctcacgaatc ggattatgcg tatccagact      2340
     ccgacctcca catctcacac attttcggcg gctccacaac gtactcctcc aagtgagaat      2400
     acaagaaagt ggaacgtgaa gtctgttcga catggcgggg ggctgcaccc aagatgaagt      2460
     ggtctaagca gaaaatagag ttctcgaaag aagaccaccc caagaccgcc gttatcccag      2520
     gacgatatcc gatcgtggtc gaacccatta ttcggaacat caaagtagcg cgagttctca      2580
     tcgacggtgg cagctcgatc aatcttcttt tcgctagtac tctagacgca atgggaattc      2640
     cgcaaagtga gttgacacca actgatcaac ccttccatgg aattactccc caatcatcat      2700
     ccagaccttt tggcaagatt acgttgcctg tgactttcgg ccaagccaac aacttccgaa      2760
     cagagcagat caccttcgat gtcgttgaat ttgatacagc ttacaacgcc atcatcggga      2820
     gaactgcact tgcgaagttc atggccatat ctcactacgc gtatcaagtg ctcaagatgc      2880
     cgggaccgaa gggaacaatc actattcagg ggaacacaaa gctggcagtg cagtgcgaca      2940
     agcggagcct cgacatagtc gagcaaacgc ccagcccacc cgccacaact gagccaccca      3000
     agaaagtgag caagacaaat aagacgccga agccggacgg cgccatcaag atcgttccac      3060
     tctccagtgc caatcccgac aagactgtca agatcggggc gacactaaac gagaaatagg      3120
     aactcgcgct catcaccttc ctccgcgata atgcctgcat gttcgtttgg caaccgtccg      3180
     acatgccggg ggtccctagg gaggtgattg agcacaaact aatggtgcga cccgatgcca      3240
     agtcagtaaa gcaaagactg cggagatttg caccagaccg gaaacaagcc atacgagaag      3300
     agctcgacaa acttctcaaa gctggcttca tcagagaagt acttcatcca gagtggctag      3360
     ccaatccagt catggtgcgg aaggccaatg gaaaatggag aatgtgtgtc gacttcaccg      3420
     acctcaacaa ggcgtgtccc aaggatcact ttcctctccc tcgaatagat caattggtgg      3480
     attcaacagc cggttgcaag ctattgagct tcctcgacgc ttactttggc taccaccaaa      3540
     tcagcatggc aatagaggac gaagagaaga cagcattcat catgccgttc ggggtatttt      3600
     gctatgttaa gatgccgttc ggactgataa ccgtcgggaa tactttccag cgcacggtcc      3660
     agggcgcact tagcaaccag cttggcaaca atgttgaggc ttacgttgac aacatcgttg      3720
     tcaaaaccaa gacaagcgac tcattgattg acgatctgcg ggaaatgttc gacaacctcc      3780
     gacgatatcg cctcatgctc aatcctgaga agtgcacgtt cggagtaccg tcgggcaagc      3840
     tactcggatt ccttgtctct ggcagaggaa tagaggcaaa tcccgagaag atcaaagcaa      3900
     tcgagaacat gaagtcgccc acgagactca aggaggtaca aaagctaact ggatgcatgg      3960
     aagcactaag cagattcgtc gctaggatgg gagaacgagc acaaccttcg ctctattgaa      4020
     gaaacaagac aaatttatat ggacacagaa agccaaagag gcatttattg cactcaagcg      4080
     ctacctatca aacccccctg tacttgttgc tccccaacct aatgaagaat tattcctcta      4140
     tattgccgcc acgccatatt ccgttagcac tgtcattgtt gtcgagagag agaaagtaca      4200
     gcgaccagtt tattacatca gcgaagctct ccatgacgca aagacaagat acccacatat      4260
     ccaaaaaatg ctttacgcag tcatcatgac atcaaggaag ctgcgccact actttcaagc      4320
     tcacagagtc acagttgtat cctccttccc ccttggagaa gttgtgagaa acaaagacgt      4380
     tgtcggccgc attgcgaaat gggtagtcga gctaagccaa tttgatgtcc actttctgcc      4440
     gcgaatagcc atcaaatccc aggtactcgc cgacttcgtt gccgattgga ctatgccgga      4500
     caacaaatca gacaaccaag gcgacaacga aacatggaca atggcgttcg atggcgcact      4560
     caacagccaa ggagcagggg caggatttat cttgacgtct ccttccggag atcaattcaa      4620
     gcacgcaatc cacctcaact tcagggcgac caataacact gcagaatacg aaggactact      4680
     cgccaggata cgagctgcag ccgcacttgg cgccaagcga ctaatcgtca aaggggactc      4740
     cgagctagtc gcgaaccagg tgcacaaaga ctataaatgc tctaaccccg agttatccaa      4800
     gtatctcgta gaagtcagga agctagagaa gaggttcgat gggatcgagg tccgacacgt      4860
     ctatcgcaag gacaacgtcg agccagacga gaaccactcg aacccggcac ctttctcgat      4920
     atcctgacga agccatcggt gaaagaagtt agcggcgaag ttagcccgaa cacccccgac      4980
     atcagctcgg aggtcaccga ggcagaacgc gccgttgctg acatcgaaac cacagacgac      5040
     tggcgcatcc cattaatcaa attcatcagc agcgaggagt tgcccgagga cgatacagag      5100
     gccgagaaaa taacccgtaa agcaaagatc tactgtatgg tcggtaacga tttatacaaa      5160
     aaagcgctaa acggggtact tctcaaatgc gtctctactg acgacgacag acacctcctc      5220
     ctcgacatac atgaaggcat atgtgggtca cacgccgccg gtcggacatt ggtcggcaaa      5280
     gcttttcgac aagtcttttt ctggccaacc gcccttaaag atgcattcga catggtccag      5340
     cgatgtgaag cctgtcaatt ccacagtaaa cacacaaagc tacccgcgca agcgctccag      5400
     actatccctc tgacttggcc gttctcgtgc tgggggctag atatacttgg gccattccca      5460
     cgaggacagg gcggctacag attcctattc gtggcgatcg acaaattcac caaatggata      5520
     gaagcagtgc ccacggggga aatcaaggcc gacaacgcca tcaaattcat cagagggata      5580
     ttctgcagat acggactact gcaccgcatc ataaccgaca acggctccca attcatcagc      5640
     accgacttcc aagattactg catcgggttg ggagtcaaaa tatgtttcgc ctcggtctct      5700
     caccctcaaa gcaacgaata agtcgaaagg gcaaacgaca tagtactaca agggatgaaa      5760
     acccgcgtct acgacaggct catgtcacaa gacaaaaagt gggttgaaga actcccatca      5820
     gtactatggg ccgtacgcac cacaccgaca acgtccaata aggaaacacc cttcttcctc      5880
     gtgtacggct ccgaggccat gctccccggc gagctacgac atcagagtac acgagtacag      5940
     aagtattcca acgagaacca ggaggaacag tgagacatcg atgtaaatct tctcgaggag      6000
     catcatgagc gagttgccgt ccgagcagcc agctatcaac agtccctccg ccgttatcac      6060
     gagaagcgca tccgagcacg catactttcg atcggcgact atgtcctccg acgagttcaa      6120
     acccaagcag ggcaaaacaa actctcacca aaatgggaag gaccttacac aatcacacaa      6180
     gtcttgcggc caggcgcatt caaaatcgca gacggtgatg gtcgcgaatt agcaaattct      6240
     tggaacattg accaactacg taaattctat gtatgagtca ataccactgt acctgtaagt      6300
     acccttatag tatcaataaa gcctatttct aggtcccata tcacaatcaa agtgttttca      6360
     cccgatgatc ccttactctg atgacaccta gcgttgaaac ctgtccttat gtccctttac      6420
     gccgtctcga caaggcctcc gaggaaccta agggatcttc ggctggggat gcccagagcc      6480
     gataaggcct tgtcagatcc tgtagagaca aaagaccatg taagatctgg tcgtgtaaga      6540
     gttctcaccg tgcgtattaa ccaagccgtg aaatcggaaa tcaattttcc aaactcacgg      6600
     ctgggggcta ggatcagagc ttattcaacc aaggcaggtc aatggtccaa gagccttatc      6660
     ctccgagaaa attcctccga cgacaaggct gggggctagg gagagtgtac gactcaaacg      6720
     gctgaccaaa gtcattaact gagaacacac tcttacacac gacatctaga gtaagataca      6780
     tttgtttaag gaatatttct ttattcacaa aataattctt acagttttta cataaatttt      6840
     ccactacatt acatctttcc ctaagatatc tgtgacaggg catgagtact accaagaagg      6900
     ccaacgctag tccatagact ggaagatctt ctcggccagc ggcgacatcg acctcgccag      6960
     atggtctatc tccgccggag ttctccgaga acgagcaaaa ccatggcgga gaaactcgag      7020
     gtccaagcgc gggcggtgat ctcgtaggca agccagcatg tgcactccgg cgtatcggct      7080
     cactcgacga cactcttgct tcaaggcctc gtcgatatgc ttgccgatgc catcaagttg      7140
     ggcacaggcc ccgtttagcc aagagatgta cccagccgcc gactcctcgg gatcatcgcg      7200
     gactactcga agttccctgc atactctggc catggaggca cagcaactcc tcaagtaaga      7260
     gttgaaccac acctcgcgac ctcggagcgt ctccacaacc tgctctttct tcacggccag      7320
     catggttctc tcaagttccg ccacttcaaa tttcgtcttc cagtattgga tacgacgatc      7380
     ttgatttgca agggcaccct cgagatctgc taaatgtgat gaccactaag acaagttgga      7440
     tacctccttt acaacataaa taacctaatc aagaggtcac taagaggtga aaaggctact      7500
     cacttgaggt ggccgttgcc atcccggcct tcgcatcaag agtttgatcc acattgtcag      7560
     acgaaacatg tggttcaaaa tcgagtaccg gaatcatcgc cagtgactca ggctgcccgc      7620
     gctgctggac atcctcatca tcaacatctc tataatggac aaaaactccc gagatcaaca      7680
     tacaaaattg gacaagggtg gtaatcgcac gaacgaaggc ggccagagtt caagatttac      7740
     acaatatata acaaatacaa gaagtcctac tcttcaaaaa ggggcagaac agactccccc      7800
     agatcactga cttcttccat cacctcctta cgcgtgtcgc ttgccgcccc ctgatccaag      7860
     atctcgcgca gatcgagttc aggacgcgac aatcttacac acgcgaggac gtgacacgct      7920
     ccggtgtaga tgccgttcga cgtctcctcc gcgatcctgg ccgcatgctt ggaggggatt      7980
     ttccccatcg ccgtcgccag ttccgcaaga gaggaagtca gcaaaaactc gtcgggattc      8040
     gccgggatcg tggacttgac gccgcactcc tcggcgagct gatggaggcc agtgtaggtg      8100
     acccgcaacg agccatggat ctcggagaga ttgttcccga gttccgacat tcagtcctcg      8160
     agccccttcc gttgatgctc gttgccggcc accaactccc tcatcttcgt gaggtcctca      8220
     cgggcttcag ctagctcgcg caccaatctc tcagcacgcg cattcgccgt cgccgcttcc      8280
     gacctcgcct ccgagatctc gctgccgatg ccgcgagcac cagcttcgag aagacgcccc      8340
     atctcgactt ggagctcctc ccaggtgaga acggccgctg gcagaccacg acccgcagcg      8400
     ggattgttga tggggccact aggcgtcgcc tcccggctcc cggtcatggg cacgacatct      8460
     gtcgaggccg tggcaggtga tgcgctagaa gctcccccgg acttggcccg tgcagccttc      8520
     gcccgcgcct ccctacggac aaccacgaat caaacaccat ttgaacgaaa agcacgagaa      8580
     tccaagaatc tatttactta cttctcgccg atcgttacaa tgcgctgtcg tcgtggaggt      8640
     ggaggggacg cgtctgaagc ctgaaagaca atcaatacag agtaagaaga aaccctcctt      8700
     gctgcacgat ctgacgacaa gatgataccg aggggggtcg ctgccttgcg gcaatgtccg      8760
     agtacagacg agaatttcct cgccttggtc gggactttgc caccgctagt ggtggccgca      8820
     tcagatgcct ccttgacaac cttctccttt agagatgtcg ccacctgatg gtccgcgagc      8880
     ggcccgatga tgtcagtcaa aggaagggcc tacgcttaat caggtcataa ggtgatttcg      8940
     aaaggagaat acgagatgct tatcaaatac acttacgttg atggcttcat cgcgttccgc      9000
     cgcccccttt tcacaaaggg gcacggggat gtcgctagcc gtggtcggac cgctgatcat      9060
     cacttgaccg acgcgccgct ccatagcttc gctgcttaga cctgttaaac ggaaaccaac      9120
     ttttgataag tcaagaggaa cgcgactaca agcacgccaa gatgaatacg agaaagatac      9180
     cccgaggaga aacccgggtc gcgtcatccg acccgaaata gttataggct ggatgggccc      9240
     gagcctggag cggctggatc cgcctaccga cgaagtctgc agcgacttca tatcccgaca      9300
     agccctgttc tcggagatca tcgatgatgt cgataaacga ctgaagagag gggctcaaag      9360
     ggggcttggc ggtccaggcc ggaatcttgt ccggttgatc ctcgggaaca acgaagacag      9420
     ggttcgagtc cttgatctca agatagaacc acctgttccg ccacttactg cgggaagaag      9480
     gacactggaa ggggatataa cgcgacttca tgccatcacg aagtcggaac ccgacgcaac      9540
     cagacaccct attggattcc atccaacgca gttcatagta gaaacggaag agatcgagaa      9600
     aaggctctac cccaatgtag gcctcacaga gatgaacaaa gatactaaga aaggcgatgg      9660
     aattaggatt caaatggaga agagaaagac catagaaatt caacaccagg agaagaaact      9720
     cggaaggtgg aggaagaaaa ccgcagagaa cgtaatcttc gatcacaacc atgcgaccta      9780
     agaggggctg aggatcagta cctcctactt ctctctccat gtctccacgg ccgggaaggg      9840
     cgccgtcctc ctaaaggttc ttcaacgtcg cgctggtgga agacgactta ccgagatcca      9900
     ttgttgttcc aagatcgccg gaaaacaagc ctgagttggc gaactagggt ttcttgcggc      9960
     ggcggagaag gcaaggagcg ctggcaggtg gtgtgtgttc aacaaggttg gcagacttca     10020
     aaatgagctc ccaaaattcc tttaaataag cacactacca acggtgcgaa ttccaaggaa     10080
     cggagagaga tccccgccgg aaatctctgg gcccgttacg cgcggtagtt ttctggactt     10140
     cagttcaaaa ttcactcgtg accgttgggc ttcaaacggc atgctcgact acgttctatc     10200
     tccgcggtcc tcgcgccaag aatgacaacg ttctcgacac ccgaagtcat aaatggttgc     10260
     acgagttcat tttaagcaga agtcgggggc tac                                  10293
//
ID   ATLANTYS-LTR_OS repbase; DNA   ; ORY   ; 1508 BP.
XX
AC   .
XX
DT   06-DEC-2004 (Rel. 9.11, Created)
DT   06-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Rice ATLANTYS_OS gypsy-like endogeneous retrovirus LTR sequence -
DE   a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   ATLANTYS superfamily; ATLANTYS-I_OS; ATLANTYS-LTR_OS;
KW   LTR sequence; SZ-19LTR; gypsy-like endogeneous retrovirus.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1508
RA   Gentles A., Jurka J.;
RT   "ATLANTYS_OS, a rice Gypsy-like LTR retrotransposon.";
RL   Repbase Reports 4(11), 286-286 (2004).
XX
CC   [1] (Consensus)
XX
CC   LTR sequence for ATLANTYS_OS gypsy-like endogeneous virus
CC   retroelement. Internal sequence is deposited as
CC   ATLANTYS-I_OS. Similar to rice LTR sequence SZ-19LTR.
XX
SQ   Sequence 1508 BP; 407 A; 276 C; 304 G; 519 T; 2 other;
     tgttaacgac caaatttggt aatatcagca tcggaaaaga agattagatc gaagcggagt        60
     cggaggcgga gatcgattcg ggaacagagc aagaatcggc tggagtccag atcggctacg       120
     attaggatcg gctgggtctg agtcggacta ggtaagccga tacagccgat tccgacaata       180
     cgacttggtg tatgacatcg ggttgarttg atgtgcttca agatgattgc cgcacatgga       240
     tagagtcctg agaaggcaat tgtatctatt aattaggata ttttatgtaa tttccttaga       300
     gatatgtttg ggcaaaagtc tgccgcaaag acttatggta tcttagagtt tgttagagat       360
     aatagtcgtg tccggtatgg acatatcttg taattctcgg gtataaatag accccgagcc       420
     ctatgtaatt tttaacacac gttcaataca atttcggcgc atcgccaccc ttttgcttta       480
     gttttatttc gacgagttct tgctttcggg ttgagctgca tcggtttcga tcttcaacaa       540
     gaggtaaaac ttgttatgac ggcttgtgtt ctcgggatta gtgcttccat ctttatgata       600
     ctctaatctt gtttatgtaa ttcgtcgagt tatcatatat cttacataat ctctggcaat       660
     atcgytatct aacctacaat cggctaacat ctgttaatag aaggcagccg attaggttaa       720
     atatcgatgt tgacctagat tatataagat atctaccact ctatgaaact tccagcggct       780
     tgattgtcta gatattgttc ttcttttcat acttaatgct gcatcagttg agtttgatct       840
     attaagtcgt gcttagaata tcaatctcta gcctgccttc tggttgccga ttagggtagt       900
     atcggagttt cagccgatct tatctgattt aactatattt gctctatatg cttcattgac       960
     atgttaaatc tgccctttat gtcaagatct tgttgcattt aagtatatta ggcttttgtt      1020
     tggtatatta tacttgtttt aatatcttaa tatagagtag tatcggagta ttagccgata      1080
     catgctagat ctatctgatc ggctatgcta taaacatata taatcctgtt attaatatat      1140
     atttcgatct aagtgattta tactgtctcg gcatggtgac cgatctatcc caatcacttg      1200
     atttaagtat atatcgatat aagaactata tattgttaat atctacagcc gatcgagtag      1260
     atttagttct ttattatcta tttataaccg ccgatcgatt catatatgac atcggctcaa      1320
     agataaatga tatgtcatcg gcacctagcc gatcggctat catttataga tttaaccacg      1380
     gtttctttgt ttctatttct tgttgattac aggatcaaat caactggcac gctaacacat      1440
     ccgaaggcga gctttggacc tgcactggag ttaagcagat ctcccaggcc tcgtgttttc      1500
     tgtcaaca                                                               1508
//
ID   CLOUD-2     repbase; DNA   ; ORY   ; 711 BP.
XX
AC   .
XX
DT   04-AUG-2002 (Rel. 7.07, Created)
DT   04-AUG-2002 (Rel. 7.07, Last updated, Version 1)
XX
DE   Rice Mutator-like non-autonomous DNA transposon CLOUD-2.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; CLOUD-2;
KW   Mutator-like; target site duplication.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-711
RA   Jiang N., Wessler R.S.;
RT   "CLOUD-2: a Mutator-like non-autonomous DNA transposon from Oryza
RT   sativa.";
RL   Repbase Reports 2(7), 9-9 (2002).
XX
CC   [1] (Consensus)
XX
CC   9bp target site duplications.
XX
SQ   Sequence 711 BP; 249 A; 103 C; 87 G; 272 T; 0 other;
     gagtaaattg cgcccacggt ataacaactt ggcagatggg tgcgatatag tgcaagaact        60
     ttagaattga acgtccaagt gtaacaattt gacaagtggg tgcattctag tacaagaact       120
     taataattta gtattttggt aaatcaattt ggataagcat atgctaggtg agttttttca       180
     ctatgtcaat atgccaaaac acaataatcc tacaaatatt accttttttt agttgataca       240
     aatattacct tataatattg aatttaatct ttaagaatta tattgcacat acaatttata       300
     tccaattacc tttaagaatt ttttgttttc ttcaccttct caaatatcaa ccgaaatata       360
     ataatttcta tattcagttt aattgacttt cagttattag ttattaggaa aaaatataaa       420
     tatgtttata caaatccacg ctagtatatt gtcaaaataa gtacttaaaa atttgaattt       480
     atataaaaaa tgcttgaaat taagttgtca aaattataat ttattttact cttttttgta       540
     ttaaaatctt acctacctta aaagttattg catttatacg accacttata aagtccttat       600
     actaaattgt actttcctgc taagttgttg tactagaacg cttatttttc aagttattat       660
     actaaattac acccacctac taaattgttg taccgtgggt gtaatttact c                711
//
ID   TWIF        repbase; DNA   ; ORY   ; 586 BP.
XX
AC   .
XX
DT   13-SEP-2002 (Rel. 1, Created)
DT   13-SEP-2002 (Rel. 1, Last updated, Version 1)
XX
DE   Rice putative hAT-like non-autonomous DNA transposon TWIF.
XX
KW   HAT superfamily; DNA transposon; non-autonomous;
KW   target site duplication; TWIF.
XX
OS   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-586
RA   Jiang N., Wessler R.S.;
RT   "TWIF: a putative hAT-like non-autonomous DNA transposon from
RT   Oryza sativa.";
RL   Repbase Reports 2(8), 58-58 (2002).
XX
CC   [1] (Consensus)
XX
CC   9bp target site duplications. Insertion in SZ-24LTR.
XX
SQ   Sequence 586 BP; 76 A; 207 C; 199 G; 104 T; 0 other;
     taggtgtcca aacgggcggc acggcccggc ccggcacggg cacgggtccg gcacggcccg        60
     tttcggcacg gcccgttagg cacggctgat gaaacgggcc gtgccgtgcc ggcccacgtg       120
     ccgagccgcc ggcccaagca cggcccgtgg atggccgggc cgtgccgtgc cggcacggca       180
     cgcctgcggc ccacgggccg ttcggggcga aatttgagat tttttggaat tttttcgaaa       240
     tttttatgaa ttttttagcc tcccaacggt tattttcaaa tttgaacggt caaatagccg       300
     ttagtgtgcc acgtggcgcc ttcccattcg accgccgccc gcccacgtgg cgctttcggc       360
     ctgacgggcc gccggcgaaa cgggccgtgc cgtgccgcgg gccgtgccgc tacagtagcc       420
     gtgccgtgcc ggcccgcggg ctcggccagc ggcccaagca cggcacggct actcgggccg       480
     tgccggcacg gcccgttact gtagcaggcc gtgccgggcc gtgcctgcta caggttcggc       540
     cgtgccccgg gccgcccgtt tggcccggcc cgtttggcca cctcta                      586
//
