ID   LINE2C_CB   repbase; DNA   ; CBR   ; 3234 BP.
XX
AC   .
XX
DT   08-JUL-2004 (Rel. 1, Created)
DT   08-JUL-2004 (Rel. 1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of LINE retrotransposons - a
DE   consensus.
XX
KW   LINE; Cb000207; LINE2C_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3234
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-3234
RA   Pavlicek A., Jurka J.;
RT   "LINE2C_CB - a family of LINE retrotransposons.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are 98% identical to the consensus.
CC   Distantly similar to LINE2A_CE and LINE2E_CE. No functional ORF
CC   detected.
XX
SQ   Sequence 3234 BP; 940 A; 530 C; 964 G; 797 T; 3 other;
     taataatata tttatttgca atgcatgggg gaaatcgata gataatttgg caagaaatgg        60
     gacctgtaca aataaaagaa gtaaaatgac cagacggacc gacnagagtc ctgtaggtca       120
     agtgggaggg atcagaatat cataaggaat cgctcctact cgcttagcaa acgccaccgg       180
     actgagctta gaatttatca ccttacatac acggttccac atagacaagt ttctgtgaag       240
     gaagcagtca aagtattgac cgttgatttt gaacaaatac ggggctctgt tagaatggct       300
     gggaagaatg taggacgaca tagagggaaa atggtatgag tttataacaa ttttgtgata       360
     ggtacgaaga actagaaggg tgcggcgatg aagggtggtt agcatagaga actgggatag       420
     gcgatcggtg tatgaattga agggcatatt acatctctgg aagacttttc tggtgaaata       480
     acgaagagga gattctagtt tattggcaag tgtggcattg gatggatcga aaagttcaca       540
     accgtattcg aggaccggtc taatgtaggt gtcgaagaga cggaaatata aacaagggtt       600
     tttcgattgg aacgttttca gtatttggcg ggacttgagt ttagcagagt aggcaataag       660
     attgatgtgt ttgtcgaatt gaagttgatc atcaactagt atacctaggt ccttgaatga       720
     gcgatgcgga gtaatggggg atcccttaat aaagtaaact gtcttaggat tgcgtttacc       780
     ataatgcata acggccgtct tattttcggc tagtttgagt ctccagatgt cacaccagtg       840
     ctcgacgatt tcgatacttc tctgcatatc caatgggtcg gaaccggtta tttttaggtc       900
     gtcggcgaac gccgtgacat gaacattggg aggaaagagg ccgagtaagt cgttaatgta       960
     gatcagaaac aaaaaggggc cagtgacact tccttggggg actccggatt tgacaacaat      1020
     ctcgctggtt gacattaggc cattaacctt gacgttggat gagcggttgc tgagaaagga      1080
     ctcgaaccaa acgcagcatc gttcatcaat acctattcgc ctcattttca gcagcaagag      1140
     attgtgtggg acagtgtcga atgccttgcg aaaatcaaag taaataacat ctacgaattg      1200
     ttgcttattt gctaaggttt tctgtattct ggaagtggac tcaaggacgg ctagaacaca      1260
     ggatcgctta ctgacgaatc cgtactgatt cggagaaata ctcggaccga taacacgctt      1320
     tagctcttca aggactaatc tttcgaagag tctggaaagt gcatgagtga gcgttatggg      1380
     tctgtagtta ttagcgtcat atttggatcc cttcttgaat attgggctaa caaccgagtg      1440
     cttccagatc tcaggaaatt tggcggagga gaaggattct tggaagatga gcgaaagagg      1500
     gatggttatc gcatcactgc actttttgat tacaaggaag ttgataaaat ccggggagaa      1560
     accgactttt gagggtagag aaccgatgtg ctttgcaata tttagaggag aaaaatcagg      1620
     acagacggca aagggagcga tagcagggag ggcggagaaa ggagggcttg ggggcgagaa      1680
     ggcctcttgg aagacggaag aaaattcgtt ggctagttca gaagcgtctg aggataaggt      1740
     gccattaacc aggagagaaa tgggacagtg cgggggacgg agtctagatt taacgaaatg      1800
     gaagagttct ttggggttct tgttgttgat aatagaaagc tcctcccttg cacgcgccct      1860
     cttaactcga ttgagctgtc gccgaacaag cagtttgagc tggggtctag ggagggacgg      1920
     gttgcgacgt tggatgaacc tgaaaacctt gggttttcta tgcgagaagg ttggacgacg      1980
     agcacggacg gttggagtgt agaggactac gagctcgttg aaaatggcgg agaaatgagc      2040
     aagtttcgaa tcaaccgtgg agaagaaaga tagctgcctg ggccagttgt aagagcagag      2100
     atgatccaaa agacgcttga cgtcacattt tatatagtct agacgttttg acgaggtagt      2160
     gttgaggatg ggtgaaggag gagaaatact aggtaggatt gtttcgaaga ggacagagga      2220
     atggtcagag agcaggaagg gtggaagatt cacggttttc gagatgtgtt gcggcttgtt      2280
     acaaaatact aggtctaaga agttttcagc accgcaatga ctggttctgg ttgggaagtc      2340
     tactatctga gtcagatcgg atagtgacat caggctttcc aggccagcag gcaaatcatt      2400
     aggcagaagg ttatcagaag accagtttat ctgcgggtaa ttgaaatcac cgagaaggaa      2460
     attgaagcga taactgttgc tgagcagtaa agatagattg tgaaaaagta catcggattg      2520
     ggctggtgag gtggacggag gacggtatac taagacgaat cggcaactta tctgaagcag      2580
     atcgacagtg ataatttcgc agtggtgtag ggggtaaaac tgggagctga gactatcagc      2640
     ctctaccagc tgtatgtctt tgcgggcgaa naccgcgacg ccacctccct tgcctttagg      2700
     gttaggggac cgtctgtcga agcgaagaca atgaagggtc gaagatgagg agagagagtc      2760
     agggacggat ggggagagaa aggattcagt aacaaaatga aggtcgatct ggttgtctag      2820
     catgtcagag tgaagtactt ggaggcgttc tgcagatgct atagatctga cattggagag      2880
     tttgcaggag agatttatca cagctgattt gactgcggaa gcaggtaaag ggttcgtttt      2940
     agggaggggt ttcaagggaa agggggacaa aactggggcg gcgatatgac acggggagat      3000
     atcggagacg ggacgaggtg ccacggttgg acagacaata acatttgaat ggacatttat      3060
     acttttaaac agacgttgag acatgcatgt ggtatcatga tggtagatgt ccgagcgggt      3120
     ccggtggcna atttcctatg cagaagagga gggagcggct ccctgtgcag gggctttggg      3180
     aaggggtctg gggtttgagc tctcaacaat agtaaggtct ctaacaaaat attt            3234
//
ID   LINE2B_CB   repbase; DNA   ; CBR   ; 2571 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of LINE retrotransposons - a
DE   consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR-1; Cb000177;
KW   LINE; LINE2B_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-2571
RA   Pavlicek A., Jurka J.;
RT   "LINE2B_CB - a family of young autonomous LINE
RT   retrotransposons.";
RL   Repbase Reports 4(4), 110-110 (2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   Distantly similar to LINE2C_CE, LINE2B_CE, and LINE2D_CE.
CC   LINE2B_CB contains a single open reading frames with endonuclease
CC   and RT domains.
CC   LINE2B_CB_ORF: 654-2397 (581 aa)
CC   MVSDEFRILSAPHCRAARALIKSRIRSSPKVPPLSANGCLITSEHEKSTLFTKTFSSNYNHLTSSASITP
CC   AISHQHLPFSGSDLEIFDPWIIEKLLRKLPPRCGYSPHSANYFIIKKCATTLALPLSIIFSDSLSTSHVP
CC   DSWKHAVVVPIPKKGSPSSPENYRPISLTDPFARIFERLVCDRIKWEFLHQFSSLQHGFLSNRSCTTSLV
CC   QSFSNYKATLLKYNTLDVVFFDFRKAFDQVHHQLLIQKLASFGVPKSYVAWFSSFLSGRTFSVKIYDFIG
CC   PPSSVIPSGVPQGSVSGPLLFLIFINDLLLELEQIPSLHLAAFADDIKLYSHDPIALQTGINMVVNWATA
CC   NHLPLAHSKTALLRLGSHNSSHPLNIAGVTLTPSSSVRDLGLITDSSLKFSAHINKITSLALLRSKQLLK
CC   SFRSKSPEFYIHLFKCYVLPILEYCSVVYSPPPSSRLALKLESPLRFFSKCIFQRCNIQYSSYSDRLSIL
CC   NMFSIRHRRLKAQLILLYKFLNGSAYFPNLNAHVKYSSSPRRPMNLIIVQPYSSDYFSXIVPLWNAITSQ
CC   VTRFLLPSEFESLISSSITRY.
XX
SQ   Sequence 2571 BP; 594 A; 780 C; 317 G; 873 T; 7 other;
     cctccctcat tgctcatcta gataagttcc tccctcttga ttcctccatt cttntgnntg        60
     attttatttt ccccagttta tcttggaatc cccttaacca taatcatcag tttgnntctt       120
     ttctcacttc tagaggtctt caccaacatg tctgtttccc aactcgggtc tccgatacct       180
     cagctaaaat tctggacctt gtaatctcct ctgatgatct tcctctttct aacgtcgccg       240
     tcgagcctcc actgcttaac tctgaccact ttgccgtcaa gttccacatt cttcctacca       300
     ctctcactcc tctatctcca tccatatctc gccctcgttt atggttcaag aaatgcaatt       360
     tgcgctccct caactccgat ctcgccacca tcgactggga cctctcattt agtantttgc       420
     cttctccttc cgaaaaattc actaaattta ttgatattct ttccacactt attcgtaatc       480
     atactcctct gcttcctcca cccaaatcca aacccttttc tctaccattt cgaaagctta       540
     aacgggcaag gcacctctac tccaagcttc ttaaaactcc aactacggct cccaggaaaa       600
     ttctccatgt tcgaactcgt atcaaatctc tcactcgaac aatcaataag aaaatggtaa       660
     gtgacgaatt ccgaatcctc tcagccccac actgtcgtgc tgcccgcgcc ctcatcaaaa       720
     gtagaattag atcttcacct aaagtcccac ctctttctgc taatggctgt cttataacct       780
     ctgaacacga aaaatccacc cttttcacca aaacattctc ttctaattat aatcatctca       840
     cttcatccgc atccatcact cccgcaataa gtcatcagca tcttcctttt tctggctctg       900
     accttgaaat cttcgatccc tggataattg agaagcttct tcgcaaactc ccgcctcgtt       960
     gtggctattc tccccattcg gccaattact ttatcattaa aaaatgcgcc accactctag      1020
     cattaccttt atcgattatc ttctctgact cactctccac gtcacatgta cccgactctt      1080
     ggaaacacgc agtagtcgtt cccataccaa aaaagggttc tccttcatcg cccgaaaact      1140
     atcgccccat ttcgcttact gacccattcg ctcgaatttt cgaacgattg gtatgtgatc      1200
     gcatcaaatg ggaattcctc catcaattca gtagtcttca acatggtttt ctctccaaca      1260
     gatcctgcac cacctctcta gttcaatctt tttcgaatta taaagctact cttttgaaat      1320
     acaatacact agacgtcgtc tttttcgatt tccgcaaagc cttcgaccag gtacatcatc      1380
     aacttctcat ccagaaactt gctagctttg gagtccctaa atcttacgta gcttggttct      1440
     cctcgtttct ctctggtcga acgttctctg tcaaaatcta tgattttatt ggaccccctt      1500
     cctctgtcat tccctctggt gttcctcaag gatcagtctc cggtccctta ctatttctca      1560
     tattcatcaa tgatctgctc ttagaacttg aacaaatccc ctctcttcac cttgccgcct      1620
     ttgctgatga tatcaaattg tattctcatg acccaatcgc ccttcaaact ggtatcaaca      1680
     tggttgtaaa ttgggctacc gccaaccatc tccctcttgc ccactctaaa actgcccttc      1740
     ttcgcctagg ttcccataat tcttcccatc ctctcaatat tgcgggtgtc acacttactc      1800
     cctcctcctc cgtccgggac ttgggactca ttactgattc ctctctcaaa ttctctgctc      1860
     acatcaacaa aatcacatct ttagctcttc tccgttccaa acaactctta aagtcattta      1920
     gatctaagtc tccagaattc tacattcatc ttttcaaatg ttatgttctc ccgattcttg      1980
     aatattgttc tgtagtttat tcccctccgc cttcttctcg ccttgctcta aaactagaat      2040
     ctcccttaag atttttctct aagtgtattt tccagcgttg taatatccag tacagttcct      2100
     attctgatcg tctctctatc ctcaatatgt tctccattcg acatcgtagg ctaaaagctc      2160
     aactaattct tctctataaa tttttaaatg gctctgccta ctttcctaac ctaaatgcac      2220
     atgtcaaata ctcctcctcc cctcgtcgcc ctatgaactt aattattgtt cagccctact      2280
     cctctgacta tttttctnca attgttcccc tgtggaacgc catcacttcc caagttaccc      2340
     gatttctcct accttccgag tttgaatcct taatttcttc cagtattacc cgttattgat      2400
     atatttgctc cctatttttc tttttctacc ggttacatct ttcctgtgtc aaatatctaa      2460
     attatcccgt ttcccctccc ctactcagat cggcctcgtg aggggcattt tttctgagtc      2520
     tttcatgtcc tgccctctaa tgttttatta cacctgatca ataaacaaat t               2571
//
ID   MARINER47B_CB repbase; DNA   ; CBR   ; 1082 BP.
XX
AC   .
XX
DT   07-DEC-2004 (Rel. 9.11, Created)
DT   21-SEP-2005 (Rel. 9.11, Last updated, Version 2)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; 3bp TSD; Cb000028;
KW   Cb000211; DNA; MARINER47B_CB; MARINER47_CB;
KW   mariner/Tc1 superfamily; MARINER52_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   219-1076
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-1082
RA   Pavlicek A., Jurka J.;
RT   "MARINER47_CB - a family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Direct Submission to Repbase Update (NOV-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are ~85-95% identical to the consensus.
CC   Contains ~14bp-long imperfect TIRs and is flanked by TNA target
CC   duplications from the C|TNA|G target motif. MARINER47B_CB is
CC   a subfamily of MARINER47_CB.
XX
SQ   Sequence 1082 BP; 332 A; 186 C; 196 G; 368 T; 0 other;
     caagggaagg ttttttagac aacggttgag aatttgctca aaatttgcat acttatagtt        60
     taagacatgc tctatacgat gacgaaaaaa tttttagccc gttctcactc ccaggccgaa       120
     aaactttgtc tgaaaatttg ggccgatttc ggtgcgctgg ggatttcggc ttccccttcc       180
     ctcctctacc aattccgcgt gagaggaaaa tatcggttgt gtggtgttgt ggtaagaggg       240
     tgactcatta ggattgacta tgctggttcg acccccactg tggtaaaact ttttttgcat       300
     tttttgaaac taatttttga ttccaagttt gcccccctag gcactatatg acactttttg       360
     attaatttca aaagttttca aagaaaaaaa gatttcatga gagtttgagg aaaaaataga       420
     taatggtctt ttcgaccggt tcttacatcc tcgtatcgtt aaaaacgaaa atttcagtct       480
     ctgaaagttg ctcaattttg ctctttttga ggtggagtac tgtcaaatcg atcacataca       540
     agattcgaac ctatttctat aggtttcagt taagttcaag cgatatttca gaaattagga       600
     actgtcaaag ttctaacaac aatcagattt tggagatttt ttgagcccaa agacaacatt       660
     gggctgaaaa aatttgtcag aatgctattt ttatcgtttc tgaataattg gaacgttttt       720
     tcgcactttt caaaaaattt tcaaaaaatc attttcaaag tgtggggacc ccatggtgat       780
     ttttttcaaa atttttcaaa aaaaattttt ttttgaaaat gtttaaaagt tactttagaa       840
     gatagaaaaa tgtccaaaaa tgagtttcgc actcaagcaa atcctgaaaa actaattttt       900
     aacctcgaaa aatgcatgtt tttggccaaa atttagtact aaaagcactt tcagaggcca       960
     tatttcggct ccttttgaga acgggctaaa aatttttttg gattcggatt cagcatgttc      1020
     gaaagtacct ttgtacaaat tttgagcaaa ttctcaaccg ttgtctgaaa aaccttccct      1080
     tg                                                                     1082
//
ID   MARINER36_CB repbase; DNA   ; CBR   ; 1619 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 1, Created)
DT   09-JUL-2004 (Rel. 1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA; mariner/Tc1 superfamily; Cb000358; MARINER36_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1619
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-1619
RA   Pavlicek A., Jurka J.;
RT   "MARINER36_CB - a family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are 99% identical to the consensus.
CC   MARINER36_CB contains 48bp-long imperfect TIRs and is flanked
CC   by TA target duplications. Similar to TC1, TC1_DM, TC1_XL, and
CC   MARINER15_CB. The central part shares similarity to mariner
CC   transposases.
XX
SQ   Sequence 1619 BP; 462 A; 363 C; 330 G; 464 T; 0 other;
     cagtaccggt caaaaggttg taaacgcaag gttttttgag cataactact ttttgagagc        60
     agatatcgag ccaaaatttt caccagatat ttctgtaaag gtttgccaaa tcgtggccaa       120
     gtttcataca aaaatttgaa aaaataacgt ttttttagag aaaaaattga attttcgaaa       180
     aaaaaatcaa attttgacct aaatttttca aaaaagcata atttccgaaa accactttta       240
     ttcaacacaa aacatataaa aaataacaaa ttgaatctaa tattttgttg caaagccacg       300
     agagtcaatg acagcctgac atctgcgctg catggagtcg agcaaattgt cgattactgt       360
     ctgtgggatc ttcttccatt cctcttccag ttgttggtac ttttcgtcca catttttggc       420
     ttttttccct gccaatcttc tctccagctc atcccataga ttctcgatcg gattgaggtc       480
     cggggactgg cttggccaat ccataacgcg aactctgcgg ctggagaacc aatcctaaaa       540
     tcgaaaatat tttgagacat cagaatcttt tgtaccttga cgaatttgga agtgtgtttc       600
     ggatcgttat cctgttggaa aacgatccca cgacccatgg ctttgtaatg tggcagcatt       660
     ttggattcta ggatatcctt gtagacgtag cgatccatga tagttgtgat gcgatgaatc       720
     ggtccgatgc cttttccgga aaagacaccc cagaccatac agctgcctcc accgtgcttg       780
     acggttggta attggtatct gggatcatac cgagagccaa ctggacgccg catccattga       840
     atcccgtcgc ttccgaaaag catgaacttg ctttcgtccg accacaaaac ctggttccaa       900
     tcttgacgag tccaattgag gtgttgcttc gcccaggcaa ctctggcttt tctgttcttc       960
     tccgaaatga acggcttctt aactggacgt cttcccatga ttccagctgc tctcaaacga      1020
     cgtttgacgg tcgaggtcga tggggaaacc ggactaatca aaaatacctc ccgtccaatc      1080
     gcaggcgcag tcaatcttgg attgcttctg gagacgcggg caatgttgat atcatccaga      1140
     tgagaagtga cacgtgggcg gccgatatga tactttactg gtttacatcc gtggctcttc      1200
     cagcgcttca gaaatctaga aatgcatggt tttcctacgt caaactgaga agctagatct      1260
     ccaagagatg ctccattttg gtgtccccga aaaatggctt tttgctcctc aacggtcaag      1320
     ttacgctttt tcccagctct tggcatacct gaaaactaaa agctactaaa aaaacattga      1380
     aaacattgat aaattttgaa aaaaaatagg tctgaaaaaa agggcgaaaa acccgatttt      1440
     ttcgaaaaac tgaaaaatct gcagaatcgc gtcagcgtgt ttgcgtacaa ctcgctgacc      1500
     gtagtcatac cttttgactt gcccctgtag ttaccagaaa aaaaatcacg gaatttggtt      1560
     gggtattcgt tgagttatgc tcgaaaaacc ctgcgtttac aaccttttga ccggtactg       1619
//
ID   GYPSY5-I_CB repbase; DNA   ; CBR   ; 4189 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a
DE   consensus.
XX
KW   LTR Retrotransposon; Interspersed Repeat; 5bp TSDs; Cb000288;
KW   GYPSY5-I_CB; GYPSY5-LTR_CB; Gypsy clade; LTR.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   7-1266
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-4189
RA   Pavlicek A., Jurka J.;
RT   "GYPSY5_CB - a family of autonomous LTR retrotransposons.";
RL   Repbase Reports 4(9), 233-233 (2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. The internal part contains two putative ORFs
CC   and thus the family was probably autonomous. Flanked by 5bp
CC   target
CC   duplications. Related to GYPSY6-I_CB, GYPSY1-I_CB, GYPSY21-I_AG,
CC   and
CC   GYPSY18-I_AG. LTRs are listed as GYPSY5-LTR_CB.
CC   GYPSY5-I_CB_ORF: 37-2320 (761 aa)
CC   MADLTQQLASLITAFGQFVQNPASSPTSVPSNVSTRTSQLVESISTRIPNFSYDPDEEKTFDGWWNRYED
CC   IITKDGSSLTEDAKVRFVLSKLDSKEYYHFSNRVLPATPNSLKFTDLISKLSDTFKSTSSIFRKRQEFLR
CC   MEYDGSSIEEYTVLVLRRFTSSEFKKMTDDQTCCMVWINGLRDSSYIDIRTKALQIMESKPTTTLLELEK
CC   EIKRLLDIREDSKSVCRVQQPAEVNAINRKSSTDKSQKSQKPPPSPCFKCSGNHWARECQKKVTCLNCQK
CC   SGHIAKFCRTKVKGNECPKGKIKSVIIGSATNSQVNRIYRTVIINGKKLKMQMDTGADITMISIKDWKLL
CC   GRPELQSPTIQVKSANHQPIAVKGFFKCHFKLNGTSASGMAHVAETGTLLGTDWISKDPHFWRMLNANQV
CC   SKVSSDVGSACDYLDNMREGLKAELNKQFSDVFKPELGRCTKTKASLVLKPNAQPVFRKARPVPFAAVST
CC   VSEEIERLQKAGVISPVDHSDWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPLPTADDIFATLNGG
CC   KYFSQIDLAEAYFQLKLDEQAKSMLCINTHKGLFRYNRLAFGVKSAPGSFQQVMDSMITGLDGTAAYLDD
CC   IIISGSTIEEHNKRLMALMKRINDYGFRIRLEKCTFLMERITFLGFVIDANGRRPDPEKIAAIDQMPPPT
CC   NDSQVRSFLGFIQFYGSLSRSCSSFVHHWMPLQRRMSNSNGLLNVNFHSTASSRFFVPICC
CC   GYPSY5-I_CB_ORF: 3154-4141 (329 aa)
CC   MNVLLFLKIQQKNTLCSWPIPTAPWQRVHCDYAGPVNGRYYLVIVDAFSKWPEVIPTTSITSTATINILR
CC   RIFAQFGDPETLVTDNGTQFTSSQFQSFCKDRGISHLRSPPFHPQSNGQAERFVDTLKRGLGKLKGEENT
CC   DTALYVFLQNYRSTPCSSSPDGSTPAENFIGRKIRTFLDQLLPNDQLLVSHDTEMEKQFNKQHGARRRSF
CC   IADEKVYVKNFSSINTTTWIPGIIQRHIGRTLYRVLVKDTVWIRHANQLRRRDNPIYIDVPLNLMDQIDV
CC   TPTPAPALTSSTAPPSPVPTPPTPMPRKSTRITRQPQRLVVQPSQKSYN.
XX
SQ   Sequence 4189 BP; 1253 A; 1035 C; 872 G; 1029 T; 0 other;
     tggcgatcag gcaaaactag cggtcaggca aaggctatgg cagacctgac tcaacaactg        60
     gcttccctca tcacagcttt tggacaattc gtacaaaatc cagcatcatc tcctacctct       120
     gtgccatcaa atgtgtcgac tagaacgagt cagttggtgg aatctatttc gactcgaatt       180
     ccgaatttct cgtacgatcc ggatgaagag aagacatttg atggatggtg gaatcgatat       240
     gaagatatca tcaccaaaga tggctcttct ctcacagaag atgccaaagt caggttcgtt       300
     ctatcaaaac tagattccaa agagtactac catttttcaa atcgagtact gccggcaact       360
     cccaactccc tcaaattcac tgatctgatt tcaaagcttt ccgacacgtt caagtcgact       420
     tcttcaatat ttcggaagcg tcaggaattt ttgagaatgg agtacgatgg atcatcgatt       480
     gaagagtaca cagtcctggt actccgccgg ttcacatctt cagaattcaa gaagatgacc       540
     gatgatcaaa catgttgcat ggtgtggata aatggattga gggatagcag ctacatcgat       600
     attcgaacca aagcacttca aataatggaa tcgaagccta ctactacact tcttgagctg       660
     gaaaaagaaa tcaagagact cctggacatc cgagaagatt ccaaaagtgt gtgcagagtt       720
     caacagccag cagaggtcaa cgccatcaat cgaaaatcaa gcacggacaa atcacagaaa       780
     tctcagaagc ctccaccgtc accatgcttc aaatgttctg gaaatcattg ggctagagaa       840
     tgccagaaaa aggtcacatg tcttaattgt caaaagagcg gtcacatagc taaattttgc       900
     agaaccaaag taaaaggcaa tgagtgtcca aaaggcaaaa ttaaatcggt cataattggt       960
     tcagcaacca actcacaagt caaccgtatc tacaggacag tcattatcaa tggaaaaaag      1020
     ctgaagatgc agatggatac aggtgctgat atcacgatga tcagtataaa agattggaag      1080
     ctgttgggcc gtccagaact tcagtcacca acaattcaag tgaaatctgc aaaccatcaa      1140
     ccgattgccg tcaaaggatt tttcaagtgt catttcaagc tgaatggtac atctgcatcg      1200
     ggaatggctc atgtggcgga gaccggaact cttctgggaa ccgattggat ctccaaggat      1260
     ccacattttt ggcgaatgct aaacgcaaac caagtcagca aagtttcttc cgatgttggc      1320
     tcagcatgcg actacctgga caacatgcgc gaaggactta aagctgagtt gaataaacaa      1380
     ttttcagatg tcttcaaacc agaacttggt cgttgtacga agacaaaagc atctctggta      1440
     ctaaaaccga atgctcaacc agtattccgg aaagcccgtc cagttccatt tgccgccgtt      1500
     tccactgttt ccgaagaaat tgaacgacta caaaaagctg gtgtcatttc accggtggac      1560
     cactccgatt gggccgcacc aatcgtactt gtcaagaaga agaacggatc gctacggatg      1620
     tgtgcagact tctcaacggg tctcaacgac gccatccaac ttcaccagca tcctcttcca      1680
     actgccgacg atatcttcgc cacactaaac ggtgggaagt atttttcaca gattgatctc      1740
     gccgaggctt attttcagct taagctcgac gagcaagcca agagcatgct gtgcatcaac      1800
     acacacaagg gattgttccg ctataatcgg ctagcattcg gagtcaagtc ggctccagga      1860
     tcgttccagc aagtgatgga ttctatgatc acgggtctcg atggcacggc agcatacctt      1920
     gatgatatca tcatctcggg ttctaccatt gaagaacaca acaagaggct aatggcattg      1980
     atgaagcgga tcaatgacta cggattccgg atcagactgg aaaagtgcac attcttgatg      2040
     gaaaggatca catttttggg attcgtcatc gatgcaaatg gtagaagacc ggatccggag      2100
     aagatagcag ccattgatca gatgccacca ccaacaaatg acagccaagt ccgatcattc      2160
     ttaggattca ttcagttcta cggatctttg tctcggagtt gttcaagctt cgtccaccat      2220
     tggatgccct tacaaagaag gatgtcaaat tccaatggac tcctcaatgt caattttcat      2280
     tcgaccgcgt caagcagatt cttcgttccg atttgctgtt aacacattat gatccgaacc      2340
     ttccgatcat cgtctctgcc gatgcctctc aatacggtat tggtgctgta atctctcata      2400
     gatttccaga tggttccgag aaggcaatct accatatcag caaagctctc acagcaccac      2460
     aacggaacta cagtcagatt gagaaagaag cttttggtct catcacggct gtcaccaagt      2520
     tccacaaatt catctatggc cgtcacttca cactcaagac ggaccacaag ccattactat      2580
     cgatttttgg agacaaaaaa ggtatacccc tttatagtgc taaccgtctc cagcgttggg      2640
     cgatcatcct gctcaactac gacttctcga tcgaatacgt caacactcat gattttggcc      2700
     aagcggatgc tctgtcaaga ctgatctccg aacaaatcca acagacggaa tgtgaggatc      2760
     gtgtgattgc tcaagtggaa tcggaagtct tgacaaatct ggttacaaca tgtgatcaat      2820
     tgcctgtgac tgctaaaatg attcgagcat cgtccaagaa ggatcctctg ctgaatcaag      2880
     tataccagta cactatctca ggttcgtggc ccaaaatctc tgataaaact tcacaattat      2940
     ctcttttcca caaccgacgt gatcaactct ccatcgtgtc cgaatgtttg atgttcaatg      3000
     gtcgaatcgt gataccacat gctctgagat cccgagtcct caaaatgata catcgtgctc      3060
     acccaggaat tgtgaggatg aaacaattgg caagatcact agtctattgg ccagccattg      3120
     ataaggatat cgagaaaatg gtacgtagtt gtgatgaatg tgcttctgtt tctaaaaatc      3180
     caacaaaaaa atactttgtg ctcctggccg attccaacag ctccatggca acgcgttcac      3240
     tgcgactatg ccggaccagt taatggacgc tactacttgg taatcgtgga cgcattttcc      3300
     aaatggccgg aagtcatccc aaccacatcc ataacatcca cagctactat caacatattg      3360
     agacgaattt ttgcacaatt tggagatccg gagacactgg tgaccgacaa cggcacacaa      3420
     ttcacgtcat ctcaatttca aagcttctgc aaagatcgag gaatcagtca cctgcgatca      3480
     ccaccgttcc atcctcagtc aaatggacaa gcagaaagat ttgtggatac cctgaaaagg      3540
     ggattaggca agttgaaggg ggaggaaaac acagatactg ccttatatgt gttcctccag      3600
     aactaccgtt ccactccttg ctcatccagc ccagatggct ccacacctgc tgagaacttc      3660
     attggtcgga agatccgcac ctttttggat caattgcttc ccaacgacca acttctcgtc      3720
     tcgcatgaca cagagatgga gaagcagttc aacaaacagc atggtgcccg gcgacgcagt      3780
     tttatagccg atgaaaaggt ttatgttaaa aacttcagta gcataaatac taccacttgg      3840
     attccaggaa tcattcaaag acacattgga cgaacgttgt atcgagtgct cgtcaaggat      3900
     actgtatgga tcagacacgc caatcaactc cgtcgacgcg acaacccaat ctacatagac      3960
     gtgccactga acctgatgga tcaaattgat gtgacaccaa cacccgctcc agctctaacc      4020
     agttccaccg ctccaccatc tccagtaccg actcccccca ctccgatgcc acggaagtct      4080
     acccgcatca ccaggcaacc tcaacgactg gtcgtgcagc cgagtcagaa atcgtataat      4140
     taatttctgt acctctattc atctttctct tccaacttaa aaagggagg                  4189
//
ID   TCB2        repbase; DNA   ; CBR   ; 1612 BP.
XX
AC   .
XX
DT   15-SEP-2004 (Rel. 9.08, Created)
DT   15-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Cb000463; DNA; TCB2;
KW   mariner/Tc1 superfamily; transposase.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Prasad S.S., Harris J.L., Baillie L.D., Rose M.A.;
RT   "The Genome Sequence of Caenorhabditis briggsae: Evolutionarily
RT   conserved regions in Caenorhabditis transposable elements deduced
RT   by sequence comparison.";
RL   Genome 34(1), 6-12 (1991).
XX
RN   [2]
RP   1-1612
RA   Pavlicek A., Jurka J.;
RT   "TCB2 - a family of autonomous mariner/Tc1-like transposons.";
RL   Direct Submission to Repbase Update (AUG-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99-100% identical to the consensus.
CC   TCB2 contains 28bp-long TIRs and is flanked by TA target
CC   duplications.
CC   Positions 526-1345 encode a 273aa transposase. Related to TCB1,
CC   MARINER36_CB, TC1_DM, TC1_XL, and TC1_FR2
CC   TCB2_ORF: 526-1345 (273 aa)
CC   MDRNIVRVSREDPQRSSTDIQMVVKTPNEVTPSLRTVRRRLQDAGLHGRRPAKKPSISKKNRIARVAWAR
CC   AHLHWGRQDWANHVFSDESKFNLFGTDGIKWIRRPVGCRFDPSYQLQTVKHGGGSVMVWGCFSGTSIGPL
CC   RRITSIMDRFVYEDILENTMRPWARSTVGRAFVFQQDNDPKHTSKHIKEWFRRRHVDLLDWPSQSPDLNP
CC   IEHLWEHVERQLRGVRASNANQKFDQLQDVWQAIPMSVIDTLLDSMPRRCQTVIDAKGFPTKY.
XX
SQ   Sequence 1612 BP; 435 A; 348 C; 367 G; 462 T; 0 other;
     cagtactggc caaaaaggta ttcgcaaacg gttttttgag agtaactttg ctgaaactta        60
     agggatcgat ctgaaaattt tactgtgcat gtcgtacacg gtgacgacaa attgcgtaca       120
     aggaaattgc atcattttca gaaatttttt gtttttttca attttttcaa ttttttcgtt       180
     ttttcacttt tttcatattt ttatattttt ggatattatg gtttctaaga atgttggttt       240
     tggctcctat gtatttaaaa ctgtttacag acatggccag acccctcgga aaaaaaaaac       300
     atctctcagg acatccgtaa agccatcgtc atcggcttca gaagtggatg ttccaaggac       360
     ctcttggcgc agcagttcaa tgttactaaa cgtgccatcg agaagatctt gaagcagttt       420
     cgggatgagg taatattcaa aaatagtata gttatggaaa aaaatgttta gggagccttg       480
     gtggagcgaa aatcgcctgg aagaccgcgt atcacgtcga agaacatgga tcggaacatc       540
     gtccgagttt caagagagga tccccagagg agttctacgg acattcagat ggtcgtgaag       600
     actccaaatg aagtcacacc atccctgaga accgtcagaa gacgtcttca agatgctgga       660
     ctccatggac gacggccagc taagaaacca tcgatcagca agaagaacag aatcgcccgc       720
     gtagcatggg ccagagctca tctccactgg ggacgtcagg attgggctaa tcacgtgttc       780
     agcgacgaat ccaagttcaa tctgttcggt actgacggta tcaagtggat tcgccgtccg       840
     gttggatgtc ggttcgatcc cagctaccag ctccaaaccg tcaagcatgg aggtggatcg       900
     gtgatggtct ggggctgctt ctctgggact tcaatcggcc cgctgagaag aattacaagc       960
     atcatggatc gctttgtgta tgaagacatc ttggagaaca caatgagacc ctgggcaagg      1020
     tctactgtgg gccgggcgtt cgttttccaa caggataacg acccgaagca cacctcgaag      1080
     cacatcaagg agtggttccg acgccgccac gtggatcttc tggactggcc aagtcaatct      1140
     ccggacttga atccgatcga acacctctgg gagcatgtcg agagacagct tagaggggtt      1200
     cgtgcctcga atgccaacca gaagttcgac caactccaag atgtctggca ggccatcccg      1260
     atgtctgtca tcgacaccct tctcgactcg atgccaagaa gatgtcaaac ggtaatcgac      1320
     gccaaaggct tcccaacgaa gtactaaagc tattttattc attttctatt attatttttc      1380
     gtttaccggt ctatcctaga tctcagaagt caaagttcca tttaccggtt ttttgcaatt      1440
     ttcatgaatt tttcgatttt ttttcaattt tttgaaattt tgactattct tgttgttgaa      1500
     tcagtttctt ttaccgtttt aaactttgtc ttaaaatatc agattgatcc gggaagtttc      1560
     agaaaagtta tgctcgaaaa actatttgcg aatacctttt tggccagtac tg              1612
//
ID   MARINER13_CB repbase; DNA   ; CBR   ; 1303 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 1, Created)
DT   13-MAY-2004 (Rel. 1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA; mariner/Tc1 superfamily; Cb000107; MARINER13_CB.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1303
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-1303
RA   Pavlicek A., Jurka J.;
RT   "MARINER13_CB - a family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Direct Submission to Repbase Update (APR-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are 99% identical to the consensus.
CC   The central region harbors similarity to mariner transposases,
CC   however, no elements seems to contain an intact ORF.
CC   Distantly similar to BMMAR3 from Bombyx mori. MARINER13_CB
CC   contains perfect 26bp-long TIRs and is flanked by TA target
CC   duplications.
XX
SQ   Sequence 1303 BP; 324 A; 299 C; 312 G; 368 T; 0 other;
     cagggtccgc caaaattacg tgtgcaagtg tagatgacgt tatctccaga agtagatgcg        60
     agattaagac gaaatttaac agatagttta tttcaacgct tgaaatcata attcaacaaa       120
     aattattcga ttctacctcc tttggcagcg accacggcac gaagtcgtcg agggaaggca       180
     tcaatggtgg cacgcaggta ttcgacggat aatttgtccc attcctcaga caacgacttc       240
     ttcagggcct cgatatttgc atgaggtctt gcgcagacct tattctgcag aactccccat       300
     acggagtagt cgagcgggtt cagatcaggc gacgaagccg gccattcgtc ctttggtatg       360
     aaggcgggga agtggtcctt gcaccactgt tgagccattt ttgcggtatg agcaggcgct       420
     ccatcttgct ggaagatgta tttcttctga ccgaagtggt tttgagccca cggtagcaca       480
     tgcttctcca gaatctcctc aacgtagtat ttttggttga ttttcacgcc tttatcaacg       540
     aaaacaagcg gacacttccc atcatagcaa accgctccga aaaccatgat gctcgcagga       600
     tgagaggctc gatggattgt tttaccacgc tcagctgctt gttgaatatt tgtggccagc       660
     actcggtggt tttggctatt aaattcagcc tcgacactga agagtttctc gtccgagaag       720
     atggtgataa gatgatcctt tttgcgcgtg ccagcgagaa ggcgcttcgc tttgatgagc       780
     cgtttctcct tattggcttg ggatagaata gcagcttttg ttgctcgata agaggtcatc       840
     ttcagctctt ttctgacaat tctcctcatt gatgtatagg agatatccat gtcatctgac       900
     atctttttca tggaacgatg agcatttcgc ctgactttct cccggacggc cttgactttc       960
     gctggagttc ttacagtcct cggtcttcct cttcccgtac ggtccttgag gtggccaagc      1020
     tggttgaaac gacggatggt cgcgaaaacc gtgtttcggt gcactccgag tcgtttagaa      1080
     atgtctcctg tgcttaaacc tcgcttgtaa aagtcgacga tcagagtacg atgaggactt      1140
     gccgctgtca tttacctaaa acataaccga ttgggatgaa acttggcaaa ctaataaata      1200
     atgaaataat taataaaaat tttaaaaaat tgcgcaccaa aagtgcgtca gtgcgcagcg      1260
     ccatggcgtc aaagttgtgc acacgtaatt ttggcggacc ctg                        1303
//
ID   MARINER52_CB repbase; DNA   ; CBR   ; 1085 BP.
XX
AC   .
XX
DT   07-DEC-2004 (Rel. 9.11, Created)
DT   07-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of repetitive elements - a
DE   consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; 3bp TSD; Cb000028;
KW   DNA; MARINER52_CB; mariner/Tc1 superfamily.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   7-867
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-1085
RA   Pavlicek A., Jurka J.;
RT   "MARINER52_CB - a family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Repbase Reports 4(11), 301-301 (2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. MARINER52_CB contains ~175bp-long imperfect
CC   TIRs
CC   and is flanked by 3bp target duplications TNA. C|TNA|G insertion
CC   motif.
XX
SQ   Sequence 1085 BP; 368 A; 196 C; 186 G; 335 T; 0 other;
     caagggaagg tttttcagac aacggttgag aatttgctca aaatttgtac aaaggtactt        60
     tcgaacatgc tgaatccgaa tccaaaaaaa tttttagccc gttctcaaaa ggagccgaaa       120
     tatggcctct gaaagtgctt ttagtactaa attttggcca aaaacatgca tttttcgagg       180
     ttaaaaatta gtttttcagg atttgcttga gtgcgaaact catttttgga catttttcta       240
     tcttctaaag taacttttaa acattttcaa aaaaaaattt ttttttgaaa aattttgaaa       300
     aaaatcacca tggggtcccc cacactttga aaatgatttt ttgaaaattt tttgaaaagt       360
     gcgaaaaaac gttccaatta ttcagaaacg ataaaaatag cattctgaca aattttttca       420
     gcccaatgtt gtctttgggc tcaaaaaatc tccaaaatct gattgttgtt agaactttga       480
     cagttcctaa tttctgaaat atcgcttgaa cttaactgaa acctatagaa ataggttcga       540
     atcttgtatg tgatcgattt gacagtactc cacctcaaaa agagcaaaat tgagcaactt       600
     tcagagactg aaattttcgt ttttaacgat acgaggatgt aagaaccggt cgaaaagacc       660
     attatctatt ttttcctcaa actctcatga aatctttttt ttttttgaaa acttttgaaa       720
     ttaatcaaaa agtgtcatat agtgcctagg ggggcaaact tggaatcaaa aattagtttc       780
     aaaaaatgca aaaaaagttt taccacagtg ggggtcgaac cagcatagtc aatcctaatg       840
     agtcaccctc ttaccacaac accacacaac cgatattttc ctctcacgcg gaattggtag       900
     aggagggaag gggaagccga aatccccagc gcaccgaaat cggcccaaat tttcagacaa       960
     agtttttcgg cctgggagtg agaacgggct aaaaattttt tcgtcatcgt atagagcatg      1020
     tcttaaacta taagtatgca aattttgagc aaattctcaa ccgttgtcta aaaaaccttc      1080
     ccttg                                                                  1085
//
ID   MARINER47B_CB repbase; DNA   ; CBR   ; 1082 BP.
XX
AC   .
XX
DT   07-DEC-2004 (Rel. 9.11, Created)
DT   07-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; 3bp TSD; Cb000028;
KW   Cb000211; DNA; MARINER47B_CB; MARINER47_CB;
KW   mariner/Tc1 superfamily.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   219-1076
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-1082
RA   Pavlicek A., Jurka J.;
RT   "MARINER47_CB - a family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Direct Submission to Repbase Update (NOV-2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are ~85-95% identical to the consensus.
CC   Contains ~14bp-long imperfect TIRs and is flanked by TNA target
CC   duplications from the C|TNA|G target motif. MARINER47B_CB is
CC   a subfamily of MARINER47_CB.
XX
SQ   Sequence 1082 BP; 332 A; 186 C; 196 G; 368 T; 0 other;
     caagggaagg ttttttagac aacggttgag aatttgctca aaatttgcat acttatagtt        60
     taagacatgc tctatacgat gacgaaaaaa tttttagccc gttctcactc ccaggccgaa       120
     aaactttgtc tgaaaatttg ggccgatttc ggtgcgctgg ggatttcggc ttccccttcc       180
     ctcctctacc aattccgcgt gagaggaaaa tatcggttgt gtggtgttgt ggtaagaggg       240
     tgactcatta ggattgacta tgctggttcg acccccactg tggtaaaact ttttttgcat       300
     tttttgaaac taatttttga ttccaagttt gcccccctag gcactatatg acactttttg       360
     attaatttca aaagttttca aagaaaaaaa gatttcatga gagtttgagg aaaaaataga       420
     taatggtctt ttcgaccggt tcttacatcc tcgtatcgtt aaaaacgaaa atttcagtct       480
     ctgaaagttg ctcaattttg ctctttttga ggtggagtac tgtcaaatcg atcacataca       540
     agattcgaac ctatttctat aggtttcagt taagttcaag cgatatttca gaaattagga       600
     actgtcaaag ttctaacaac aatcagattt tggagatttt ttgagcccaa agacaacatt       660
     gggctgaaaa aatttgtcag aatgctattt ttatcgtttc tgaataattg gaacgttttt       720
     tcgcactttt caaaaaattt tcaaaaaatc attttcaaag tgtggggacc ccatggtgat       780
     ttttttcaaa atttttcaaa aaaaattttt ttttgaaaat gtttaaaagt tactttagaa       840
     gatagaaaaa tgtccaaaaa tgagtttcgc actcaagcaa atcctgaaaa actaattttt       900
     aacctcgaaa aatgcatgtt tttggccaaa atttagtact aaaagcactt tcagaggcca       960
     tatttcggct ccttttgaga acgggctaaa aatttttttg gattcggatt cagcatgttc      1020
     gaaagtacct ttgtacaaat tttgagcaaa ttctcaaccg ttgtctgaaa aaccttccct      1080
     tg                                                                     1082
//
ID   GYPSY6-I_CB repbase; DNA   ; CBR   ; 4218 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a
DE   consensus.
XX
KW   LTR Retrotransposon; Interspersed Repeat; 5bp TSDs; Cb000288;
KW   GYPSY6-I_CB; GYPSY6-LTR_CB; Gypsy clade; LTR.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-4218
RA   Pavlicek A., Jurka J.;
RT   "GYPSY6_CB - a family of autonomous LTR retrotransposons.";
RL   Repbase Reports 4(9), 235-235 (2004).
XX
CC   [1] (Consensus)
XX
CC   The internal part contains one large putative ORF and thus the
CC   family
CC   was probably autonomous. Flanked by 5bp target duplications.
CC   Related
CC   to GYPSY5-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, and GYPSY3-I_AG. LTRs
CC   are
CC   listed as GYPSY6-LTR_CB.
CC   GYPSY6-I_CB_ORF: 22-4126 (1368 aa)
CC   TGDQAKAMADLTQQIASLISVFGQLVPSQATTSTNGSQLVESISTRIPNFIYEPDEDLTFDSWYNRYGDV
CC   ITKDGSTLTDEAKARLVLSKLNTKEYSHFANRILPETPNSLKFEDLFPKLKETFKSTSSIFRKRQEFLRT
CC   EYDGSSIEEYTGLVLRRFTSSEFKTMTDDQTCCMVWINGLRDNSYSDIRTKALQIMEAKPTCTLLELEKE
CC   IKRLLDVRADSKSVCSAAKQNEINAIHQKASSRDKSQKPPPSPCFKCGGKHWARDCQKQVKCTLCQKDGH
CC   IAKFCRTKKRDANVQKGNFSKVKSVIVGSATNSQRNRIYRVVTINGMKIQMQLDTGADVTLIRTKDWNRL
CC   GRPSLLAPTIQVKSANHQPIAVKGSFQCQFNLNGTSATGIAHVAETGTLLGTDWISKDKKLWNILNPSQI
CC   SAVHSDAGSACNYLDITRNRLKAELNNEFSDVFKPELGRCTKTKASLLLKPDAKPVFRKARSVPFAALPT
CC   VSEELDRLQQAGVISPVDHSEWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPLPTADDIFVTLNGG
CC   KYFSQIDLAEAYFQIELDEQAKKMLCINTHKGLFSYNRLAFGVKSAPGSFQQIMDSMITGLEGTAAYLDD
CC   IIISGSTIEEHNQRLMALMKRINDYGFRIRLEKCTFLMERITFLGFIIDKDGRRPDPEKIAAVQQMPPPT
CC   NDGQVRSFLGFIQFYGSFVKELFRLRPPLDALTKKDAKFLWTSQCQNSFDRVKQILQSDLLLTHFDPKLP
CC   IIVAADASQYGIGAVISHRFPDGSEKAIYHISKALTAPQRNYSQIEKEAFGLIKAVTKFHKFLYGRHFTL
CC   KTDHKPLLSIFGDKKGIPLYSANRLQRWAIILLNYDFTIEYVNTNHFGQADALSRLISDQIQQKECEDRI
CC   VAQVESEVITNLVSACERLPVTANMIRAASKKDPLLNQVYKYVVSGLWPKIIDKSSQISFFHHRRDQLSI
CC   VADCIMFNDRIVIPSTLKARVLKMIHRAHPGIVRMKQLARSLVYWPSIDKDIENMVRSCDQCAAVAKNPI
CC   RNTLCSWPIPTAPWQRVHADYAGPLDGTYYLVVVDAFSKWPEVFPTTSITTTATINILRKVFSQFGDPQT
CC   LVTDNGTQFTSSGFENFCKDRGITHSRSPPFHPQSNGQAERFVDTLKRSLGKLKGEENADTALYVFLQSY
CC   RSTPCTSSPNGSTPAENFIGRKIRTFLDQLRPKDQLPNSHDTEMEKQFNKQHGARSRSYQVGEKVYVKDY
CC   RNINTATWIPGTIQKRIGQTMYHVAVNDTVWTRHTNQLRRRDAPIQFDVPLDTMDPIDVTPTATQLPSSS
CC   THTTPSPVNTPAKPKTPPPKQYRKSTRIINQPPRLVMKPNQKSYH.
XX
SQ   Sequence 4218 BP; 1269 A; 1099 C; 876 G; 974 T; 0 other;
     actggcgatc aggcaaaggc aatggctgat ctcactcaac aaatcgcctc cttgatatca        60
     gtcttcggac agctcgtccc atctcaagcg accacgtcaa ccaatggaag tcagctcgtg       120
     gaatcgattt caactcggat tccaaacttc atatacgagc ctgatgagga tctgacattt       180
     gacagttggt acaacagata tggagacgtc atcaccaagg acggatcaac tctcaccgat       240
     gaggccaaag caaggttagt tttatctaaa ctcaacacaa aagagtattc tcactttgca       300
     aatcgtatcc tcccggaaac tccaaactcc ctaaagttcg aggacctctt tccgaagctc       360
     aaggagacat tcaagtcgac ctcatcgatc ttccggaagc gtcaggagtt cctacgcaca       420
     gaatacgatg gctcatcgat cgaagagtac actgggctcg tgttgcgacg gttcacgtca       480
     tcagaattca agacgatgac ggacgatcaa acatgctgca tggtctggat aaatggatta       540
     agagacaaca gctactcgga catccgtaca aaagcacttc agatcatgga agcaaagcct       600
     acatgtacac tgctcgagtt ggaaaaggaa atcaagcgtc tactagatgt gagagccgat       660
     tccaagagtg tgtgcagcgc tgcaaagcag aacgagatca atgccattca tcaaaaagca       720
     tcaagtcggg ataaatcaca gaagccacca ccttcacctt gtttcaaatg cggaggcaaa       780
     cactgggcca gagactgtca gaagcaggtc aaatgcactt tgtgtcaaaa agacggacat       840
     attgccaagt tttgcagaac caaaaaacgg gatgcaaatg tacaaaaagg caacttcagc       900
     aaagtcaaat cagtcatcgt gggatcggct accaattcgc aacgcaaccg tatctaccgt       960
     gtcgtgacca tcaacggaat gaagattcag atgcagttag acacgggagc tgatgtcaca      1020
     ctgataagaa ctaaagattg gaatcgattg ggtcgcccat ctctactggc acccactatc      1080
     caagtcaagt cggctaatca tcaaccaata gccgtcaaag gatcattcca atgtcaattc      1140
     aatctgaatg gaacatcagc aacaggaatc gctcatgttg ctgaaactgg aactcttctg      1200
     ggaaccgact ggatctcaaa ggataagaag ctctggaaca ttctcaaccc aagtcaaatc      1260
     agcgcagttc attccgatgc tggatcagca tgcaactacc tggacatcac tcggaacaga      1320
     ctgaaagctg agttgaacaa cgaattttca gatgtgttta aaccagaact aggacgatgc      1380
     accaaaacca aggcatcgct cctactcaaa ccagatgcca aaccagtgtt ccgtaaagct      1440
     agatcggtcc cattcgccgc attgcccact gtgtcagagg aactagatcg tctacagcaa      1500
     gcaggcgtca tctctccagt ggatcattcc gaatgggcag caccaattgt actagtcaaa      1560
     aagaagaatg gatcgctaag gatgtgcgca gatttctcta cgggtctcaa tgatgccatc      1620
     caactgcatc agcatccact cccaaccgcc gacgacatct tcgtcactct aaacggtggg      1680
     aagtattttt cacagattga tcttgccgaa gcttattttc agattgaact ggatgagcaa      1740
     gccaagaaga tgctatgcat aaacactcac aaaggattgt tcagctacaa tcgactggct      1800
     tttggagtca agtcagctcc tggatccttc caacaaatca tggattcgat gatcactggt      1860
     ctcgaaggga cagctgctta ccttgatgac atcatcatct cgggctcaac aattgaagag      1920
     cacaaccaaa gattgatggc actgatgaag cgaatcaatg attatgggtt ccggatccga      1980
     ctggaaaagt gcacattctt gatggaaaga atcacatttc tgggattcat catagacaaa      2040
     gatggaagac gtccagatcc tgaaaagatc gctgccgttc agcaaatgcc accacctacc      2100
     aacgacggcc aagtccgttc gtttctcgga ttcattcaat tctatggatc gtttgtcaag      2160
     gagttgttca ggctccgccc accactggat gctctcacca agaaggatgc caaattcctc      2220
     tggacgtctc aatgtcaaaa ttcattcgac cgtgtcaagc agattctcca atcggacttg      2280
     ttgctcacac actttgatcc gaagcttccg atcatcgtcg ctgccgatgc ctcgcaatac      2340
     ggtatcggag cagtaatctc acacagattt ccagatggct ccgagaaggc tatctaccat      2400
     atcagcaaag ctctaacagc tccacagcgg aactacagtc agattgagaa agaagctttc      2460
     ggactcatca aggctgtcac gaagttccac aaattccttt atggccgcca cttcactctg      2520
     aagaccgacc acaagccatt gctgtcaata tttggagata aaaaaggtat acccctttac      2580
     agtgcaaacc gtctccagcg ttgggctatc attctgctca actacgactt caccatcgag      2640
     tacgtcaaca ccaatcactt tggacaagct gatgctctgt caagattgat ctcggaccaa      2700
     atccagcaaa aagaatgtga agatcgtatc gttgctcaag tcgaatcaga agtcatcaca      2760
     aatctggtat ctgcctgcga gcgactacct gtgactgcaa acatgatccg agctgcctct      2820
     aagaaggatc cacttctcaa tcaagtatat aagtatgttg tatcaggttt gtggcccaaa      2880
     atcattgata aaagctcaca aatctctttt ttccaccacc gacgagacca actgtcaatc      2940
     gtggccgact gcatcatgtt caacgacagg atcgtcattc ccagcactct caaggcaagg      3000
     gttctcaaaa tgattcaccg ggctcatcct ggaatcgtga ggatgaagca gttggcacga      3060
     tctctggtat actggccatc catcgataag gacatcgaga acatggtcag gagttgtgat      3120
     cagtgtgcag cagtcgctaa gaatccaata aggaacactc tatgttcttg gccaatccca      3180
     accgctccct ggcaaagggt acacgctgac tatgctggac cactggatgg aacgtactat      3240
     ttggtcgtgg tagacgcatt ctccaaatgg cctgaagtct tcccaaccac atccatcaca      3300
     actacagcta caataaatat tctgagaaaa gtgttttcac aattcggaga tccgcaaacg      3360
     ctggtaaccg acaacggaac tcagttcact tcatcgggtt tcgagaactt ctgcaaggat      3420
     cgaggaatca cacattcacg atcaccacca ttccatccac agtcaaatgg tcaagcagaa      3480
     cgtttcgtgg acactctcaa acggagctta ggcaagttaa aaggggagga aaacgcagat      3540
     actgccttat atgtatttct gcagagctac cgctcaactc cttgcacctc cagccctaat      3600
     ggctctacac cagctgagaa cttcattggt cgcaaaatcc gaacatttct ggatcaacta      3660
     cgcccgaaag accaacttcc caactcgcat gatactgaga tggagaagca gttcaacaag      3720
     caacatggtg cacgatcaag aagctaccaa gttggagaaa aggtttatgt taaagactac      3780
     cgtaacataa atactgccac ttggattcca ggtactatcc agaagcgcat tggacaaact      3840
     atgtaccacg tcgcagtcaa cgacaccgtc tggacccgac acaccaacca gctccgacga      3900
     cgtgacgctc caatccaatt cgacgtgcca ctggacacga tggatccaat cgatgtgaca      3960
     cctacggcta ctcaacttcc gagcagctcc acacatacca cgccatctcc agtgaacact      4020
     ccagctaagc cgaagactcc accgcccaag caataccgga agtctactcg gattatcaac      4080
     caacctccac gtttggtcat gaagcctaat caaaagtctt atcattgatt tttgttccct      4140
     ttatttctag attaagtttg tagtctatcc cccacttaat catcctttcc cttctccttg      4200
     ttccatctta aaaaggga                                                    4218
//
ID   MARINER4_CB repbase; DNA   ; CBR   ; 1250 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Cb000007; DNA;
KW   MARINER4_CB; mariner/Tc1 superfamily.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch H.D., Fulton A.L., Fulton E.R.,
RA   Griffiths-Jones S., Harris W.T., Hillier W.L., Kamath R.,
RA   Kuwabara E.P., Mardis R.E., Marra A.M., Miner L.T., Minx P.,
RA   Mullikin C.J., Plumb W.R., Rogers J., Schein E.J., Sohrmann M.,
RA   Spieth J., Stajich E.J., Wei C., Willey D., Wilson K.R.,
RA   Durbin R., Waterston H.R.;
RT   "The Genome Sequence of Caenorhabditis briggsae: A Platform for
RT   Comparative Genomics.";
RL   PLoS Biol 1(2), 166-192 (2003).
XX
RN   [2]
RP   1-1250
RA   Pavlicek A., Jurka J.;
RT   "MARINER4_CB - an active family of autonomous mariner/Tc1-like
RT   transposons.";
RL   Repbase Reports 4(4), 115-115 (2004).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are >99% identical to the consensus,
CC   many have an intact reading frames (pos. 165-1179) encoding
CC   transposase.
CC   MARINER4_CB contains 28bp-long TIRs and is flanked by TA target
CC   site
CC   duplications. Similar to MAR_CE.
CC   MARINER4_CB_ORF: 165-1179 (338 aa)
CC   MFVPTAIHIRHVLIYLFLSHTTMKDSETFLKNVYNTHAPHYNTIRNWFHRFEKDDFSLDEKDRSGRPREL
CC   DLDKLKHALQSDPFQSSRELAVTFGVHHSTVLEGLKSLGMRKLFGRFIPHHLTQANLDRRVDDSITLLTL
CC   HAGDRWLDRLITGDEKWVFYDNHHRKSQWVGEGESPQDVPKPDLHPKKVMLSVWWGVDGPIYWELLPEGK
CC   TITGDLYTTQLRNLKKAVDRSALKDKKVYYQHDNARPHVSKQVKQELMGYGWNVLPHPPYSPDLAPSDYW
CC   LFGDMTRAFEGRSFNSRGAVEAALKQYFASRPAGFYRNGIHKLRERWRHVVDNDGQYN.
XX
SQ   Sequence 1250 BP; 345 A; 303 C; 270 G; 332 T; 0 other;
     ttaggttggc gggaaagtct ttgtcactct gtttgtttaa tcactgttct cgtatatgga        60
     ggctgtgtat gatatcgact ctagtgaata acaaggtgat aagaaccttc catataaaca       120
     agtccccatc tccttccctg ctcctcatct gtaattgaaa cgatatgttt gttcccactg       180
     ctattcacat cagacatgtt ttgatttacc tcttcctatc tcacaccacg atgaaggatt       240
     cggaaacttt cttgaagaat gtgtacaaca cacatgcccc tcactacaat actattcgca       300
     attggttcca tcgtttcgaa aaagatgact tctcgctcga tgaaaaggat cgctctggga       360
     gaccccgtga gttggatttg gacaagctga agcacgcatt gcaatcggat ccatttcaat       420
     ctagccgtga actagctgtc acattcggag ttcaccatag cacagtcctt gaaggtttga       480
     agtctcttgg aatgagaaaa ctttttggtc gattcatacc tcatcacctg actcaagcca       540
     accttgaccg ccgagtcgac gattcgatta ctcttctcac tctccacgcg ggcgatcgat       600
     ggctggaccg gctaataacc ggagatgaga agtgggtctt ctacgataat caccacagga       660
     aatcccagtg ggttggagaa ggagagagcc cacaggatgt ccccaaaccc gaccttcatc       720
     cgaaaaaagt tatgctctct gtgtggtggg gagtggacgg ccccatctac tgggaacttc       780
     tgcccgaggg caaaacaata actggagacc tctacactac tcaactacga aacctcaaga       840
     aagcagtcga ccgttcggcc ctgaaagaca agaaagtgta ctatcaacat gataacgctc       900
     gcccacatgt ttcgaaacaa gtgaagcagg agctgatggg atatggatgg aatgttctcc       960
     ctcacccccc gtattctcct gatcttgctc cttccgacta ttggttattt ggcgatatga      1020
     cacgtgcctt cgaaggaaga agcttcaatt cccgtggagc ggtcgaagcg gcactcaaac      1080
     aatactttgc ctcacgcccg gctggattct accgcaatgg aatccataaa ttgagggaac      1140
     gttggagaca tgttgttgat aatgatggac aatataatta attattcggt tattttttct      1200
     ttgagaaata aactattgaa aaagtgacaa agactttccc gccaacctaa                 1250
//
ID   Mirage1_CB  repbase; DNA   ; CBR   ; 5748 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   Mirage1_CB is a DNA transposon that belongs to the Mirage
DE   superfamily.
XX
KW   Mirage; DNA transposon; Interspersed Repeat; 2-bp TSDs;
KW   Mirage superfamily; Mirage1_CB; transposase.
XX
OS   Caenorhabditis briggsae
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5748
RA   Kapitonov V.V., Jurka J.;
RT   "Mirage1_CB, an autonomous DNA transposon from the Caenorhabditis
RT   briggsae genome.";
RL   Repbase Reports 4(6), 186-186 (2004).
XX
CC   [1] (Consensus)
XX
CC   Mirage1_CB is an autonomous DNA transposon that belongs to the
CC   Mirage superfamily detected previously in the C. elegans
CC   genome. The consensus sequences was reconstructed from several
CC   99% identical copies. It contains 15-bp terminal inverted
CC   repeats and it encodes the 1039-aa Mirage1_CBp transposase
CC   (pos. 420-4479; 13 exons). This transposon is characterized
CC   by 2-bp target site duplications. MirageN1a_CB and MirageN1b_CB
CC   are nonautonomous transposons whose autonomous counterparts were
CC   relatives of Mirage1_CB.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="Mirage1_CBp"
FT                 /translation="MPRTTHKEVRPFHGMGSNDTSSQERRVGEDDVPYAVK
FT                 EMATLEDTSNVDFEMELEDMDKDEDTDEDDGGQTEFERLLTSQEDTFAEEA
FT                 RKLCNKCVDSATATFVRIGSRSQLKELVELYIDKIMEIRKQLKEGKNIVHN
FT                 LNSPFFSKYWKAELQNHLNLSTVISIDGIQISGNKKKLWPVSLVLVDLPSS
FT                 EMQKSCNLILEGAVECSENPSTLLWNAIFGKIRSDVEAHTGRVGTITYDCK
FT                 ITTCCADQPAKRSFFGMKGHSSSMSCFYCLSEETLYKRGGVSRKEQRYGNL
FT                 TVLDSKNGENGFSSKSSKVVEVIAPYNTPIDILHNTGEGLFDRIRKAIPLF
FT                 PEIFPPDTKFIRKSDLFVIDPSSFARDIRRVYLHSNYENIENLRNGSDKTH
FT                 VGDCKITVQNFRFQHLRLTLALTALVSDSMKPKARLVLIALGFLTNKMYSN
FT                 TQAPTLFDIQLSAAAAWYLAEANKEYITMKTHELLYHLADVNKLFGNTGLL
FT                 STFSFESFYQFSLCGYSTSITRFFLQNACTKFVHYFHFINPQPFNKFRFLL
FT                 HTSLRREIVRRSKPLGTESLKRFLSLTPDLGSSHVTWDGRIRDVQKIDKEN
FT                 IPIESVLYSTMYLPLGSLISEYSSPQTNNDIVFASCKGRKTCFRFVAAVVT
FT                 TSLVGALVEPIEAVSEDRKLMDLRKIRNSLSNADFYYYSEMVNQLINYEGL
FT                 VEGSLSGRREVIPVDSILGVACYAMHYLTPNRSSRPAPYRLPLTTRTSPST
FT                 SSSSRLFVDENQRKHARGTDYTRGNLYTATVNQKWSPIGFAATQLYDMETG
FT                 SAFDRETCERNIEKMIKNDRDIDYMEWLNLASKCREEGKDLLEKFSLGMAT
FT                 QTALSNARNRRAPRETKTVSNLVGNIEKRGFSLDSAKCFDEELELPSRKTF
FT                 RLSDILTENVVCNWTSTQFDAHTKRLALHVWDAVDNADELLVCYGSSQKEN
FT                 KYVPVNPSIFTKMSGKITNQYVIKSAHTQTTSSRVLVKRTAKTEKPKNRVR
FT                 ARYNAKFGKSQSEQAAIWLHDELMKGEASELKS"
XX
SQ   Sequence 5748 BP; 1790 A; 1076 C; 1146 G; 1735 T; 1 other;
     cacaggtgat tcgcgacttg tctatcacga agctttatcc ataccgcatt tgatttcaga        60
     ccaatcgcga aaacacagag ttcataatag acctatcgcg aacgccttcg cgataggtcc       120
     tataatagac ctataataga cctataatag acctatcgcg aaaaccgcct gccggtgtgt       180
     tttttatttc tttaaattct ttctggttct attttatatt tttctgattt ttattgaaat       240
     ttttaagtgt attattttat ggtgagtgag ttaactactt ttttattgct ggaaaatgca       300
     aatttctatt caattttcat cgagaaaatt gaatatcgat aactagtaca gtaagatgta       360
     gctctagtgg tgaaactata aagataatgt gtgaaggata aactttatca gattaaatca       420
     tgcctcgtac gacacataag gaagttcgac catttcatgg aatgggaagc aatgatacaa       480
     gtaagattaa ttgttgtcca tcatcattgc atcattgtac aacgaacttt caggcagtca       540
     ggaaagaagg gttggtgaag atgatgttcc gtatgcagtc aaagagatgg caacactcga       600
     agatacttcc aatgtagatt ttgaaatgga attagaagat atggataagg atgaggacac       660
     ggatgaggat gacggggggc agacaggtat tatgctagaa cttagagatt cactgtcctg       720
     gtttagattt gaacagaatg atagaagaag tttcgacgcc cgtattgttg ttcgtaacat       780
     ctaattgtat cagtagattg tcgaatagag gtaaatgata ggaaacttat gaaaacaagt       840
     agtttttttc gcattcagaa ttcgaacgac ttttaactag tcaagaggat acttttgcgg       900
     aagaggcgcg gaaattatgg tatcattaca aaagtaattt ttcatgccac aactactgta       960
     acgcatgtgg tgagggactt ttgtcttcgc acgagaaatg gtaacggata tgtataagtg      1020
     actgagcatt tctccctttt acagtaataa atgcgtcgac agtgctactg caacgttcgt      1080
     ccgtattggt agcagatccc aattaaaaga attggtggaa ctatatattg ataagatcat      1140
     ggaaatcagg aaacaactga aagaagggaa aaatatcgtt cataatttga atagcccctt      1200
     tttctctaaa tattggaaag cagaacttca gaatcacttg aatctttcca ctgttatttc      1260
     aattgatgga attcagattt cgggtaacaa aaagtagtaa tttttcactt aacctcggat      1320
     caataatgca gttcaggaaa ttatggcctg ttagccttgt tttggtggat ttgccgtcta      1380
     gcgagatgca gaaatcgtgc aacctgattc tagaaggagc agtcgaatgt agtgaaaatc      1440
     catcaacttt actgtggaat gctatatttg gaaagatccg ttctgatgta gaagctcaca      1500
     ctggcagagt tggaawcatt acttacgatt gcaaaatcac tacgtgttgt gcagatcagc      1560
     cggtgcacta atatctccta gtttatcaat catcagtttt ttaggcgaaa agatccttct      1620
     ttggtatgaa aggacattca tctagtatgt cttgtttcta ctgtctgagc gaagaaacac      1680
     tgtacaagcg gggtggtgta agccgaaaag aacaacgata cggaaatctg actgtgttgg      1740
     attccaaaaa cggagaaaat ggattctcat cgaaaagttc taaagttgta gaggtcattg      1800
     caccttacaa tactccgatt gacattttgc acaataccgg agaaggactt tttgatcgta      1860
     ttcggaaagg tatacactaa taatattcca gtatagtact gtagcgatac ctctatttcc      1920
     agaaatcttt cctccagata caaaatttat ccgaaagtca gacttattcg tcattgatcc      1980
     cagctcattc gcgcgtgata ttcgtcgagt atacttgcat tccaattacg agaacattga      2040
     aaaccttcgc aacggctcag ataaaactca tgtaggagac tgcaaaatta cagtacaaaa      2100
     ttttcgtttt cagcacctcc gtctcacgct tgctctgaca gccctagtat cagattcaat      2160
     gaaaccaaag gctagactag ttctaatagc cttaggattt ctgacaaata agatgtacag      2220
     taatacgcaa gctccaacat tgttcgatat tcagctgtcg gccgctgcag cttggtattt      2280
     ggcggaagct aataaggagt atatcacaat gaaaacccac gtaagcagat agtggtattt      2340
     atgaagtatt aagttgcatt caggaacttt tgtatcatct agcagatgtg aacaaacttt      2400
     ttggaaacac cgggttatta tctacattca gctttgagag cttctatcag ttttcattat      2460
     gtggttacag tacttccatc acacgtttct tccttcaaaa tgcatgcaca aagttcgtcc      2520
     attattttca ttttatcaat cctcaaccct ttaataagtt taggttcctc ctacatacaa      2580
     gtttgagaag agaaatcgtc aggcgttcga aacctctggg aaccgagtct ctcaaacgtt      2640
     ttttatcgtt aacaccggat ttgggaagta gccatgtgac atgggatggg agaatccgag      2700
     atgtgcaaaa gattgataaa gaaaacattc cgattgaatc ggttttgtat tctaccatgt      2760
     atttgcctct tggatcttta atttccgagt atagctcccc tcaaacaaac aacgatattg      2820
     tttttgcgag ctgtaaggga cgtaagacgt gttttcgatt tgttgcagca gtggttacga      2880
     cgagccttgt aggagcgtta gtggagccga tcgaggctgt ttctgaagat cgaaaactga      2940
     tggatttacg gaaaattcgc aattccttat caaacgcaga tttttattac tactcggaaa      3000
     tggttaatca gttgataaat tatgaaggac tagtcgaggg ttctctttct gggcgccgag      3060
     aagttattcc tgtagactcg attctaggtg tcgcttgtta tgttagtact gaatcttcta      3120
     gtatttttgt gcaggccaac ggcgcctaca ttcataattg aaaagatgaa ttttaattta      3180
     agctaagttg aatttttact ctcgattgtt atatatgaca tttttctccg ttaattttca      3240
     atgaacttct caatcggaaa aaatatcgaa tggggataga ttttaaattt ttaggcaatg      3300
     cattatctaa cacccaatag atcatcaaga ccagctcctt accggctccc tttgactaca      3360
     agaacaagcc catctacatc ttcttcttct cgattgtttg ttgatgagaa tcagaggaaa      3420
     catgctcgtg gaactgacta cactcgtgga aacttgtata cagccacagt gaaccagaaa      3480
     tggtccccaa taggattcgc agctacacag ttgtatgata tggagaccgg aagtgcattt      3540
     gaccgggaaa catgtgaagt gagcaattct gtagaactat taaaataaca taacctctat      3600
     ttttagcgca acatcgaaaa aatgatcaag aatgacagag acatcgacta catggagtgg      3660
     ctcaatttgg caagcaaatg tcgagaagaa gggaaagatc ttcttgaaaa gttctcgctg      3720
     ggaatggcca ctcagacggc actggtaatt cgaaacagca gttcaaaaca aaatcttgtc      3780
     ttttaagagc aatgccagaa atcgtcgtgc cccccgagaa acgaaaacag tatccaattt      3840
     agttggaaat atcgaaaaaa gaggcttctc cttggattca gcaaaatgct tcgacgaaga      3900
     attagaatta ccgagtcgaa aaacatttcg attgtcggat attctcacag aaaatgtagt      3960
     atgcaattgg acttcaactc aatttgacgc tcatacgaaa cgcttggctc ttcacgtctg      4020
     ggatgcagtc agtttgaaat tagaaccttg cagtaatact aacgatcaga ttgctcttgc      4080
     aggttgataa tgccgacgag cttttggttt gctatgggtc ttctcaaaag gaaaacaaat      4140
     atgttcctgt caacccttcg attttcacga aaatgagcgg taagattact aatcaatacg      4200
     ttatcaagtc agcgcatact cagactacat catcgcgggt tttggtcaaa cgaacagcca      4260
     agaccgaaaa acccaagtaa tttcctatct tcaatcttca ctcgagaata aattgtgagt      4320
     ttgtccaagt tttcagctaa aatacctcat ctacctatat tcagaaatag agtgagagcc      4380
     cgatacaacg cgaaatttgg aaaatcccaa agtgagcaag cagcgatttg gctacatgat      4440
     gaactaatga agggagaggc atcagaattg aaatcgtgag tttttaaatt caaaaaatta      4500
     ccactcttcc gctcagtcgc acttcaaaaa atggagaaat cgtaaagaaa aatcgaggca      4560
     tcgccatttt catccaaaat aacctcacgt tggtttcatc ctagaagact ccgcgaccaa      4620
     tagtgcgggc ttctgaaaat ttaagcggag agtacctata tattcggcaa ttgcacacta      4680
     accgcgtttc ttcggtgata taaatcgatt tctcgtccca aaatcttaaa ttccatccgt      4740
     aattagcaga aatttgtgct cagaattcga tttcatccgt tttaaacatg gctccgtttt      4800
     cttctcgatt ataatactct tatataatga cggtgtttcc tgaaaattcg tgcggcgagt      4860
     accttgaatt ctaataaaat taactaaccg ttcaatccaa caattctgat catagtgagt      4920
     cgcgaatagt cgtaacagag tgcattggct gacttttgtt aacaaataaa atgagatgta      4980
     cgcaaatgcg cgtcacggtg tcggcagact gggcagtcga gtcgtcgacc gtacctcgca      5040
     gttgccaaaa cgtaggaaaa ttgaaaataa gtccgtcgct tattagaaat agttccgaat      5100
     tcatcaaaga gaaaaagaga caaaaaacga tatgtttcta acaacaaaac aaaaagccca      5160
     ataaacacat taaggaaaaa cgaattatgg gtcatcggct gacgaaaaac taatttcaat      5220
     attttcgttc tattgtttct tccaattttt cttttcagac atcccctgaa cttcaattcg      5280
     agcaatgtta gtggcgaaga cgctcccaac ttcagcggaa tcccaattac gacggatctg      5340
     gagacgatgt cgacgacagc attgatattg aaggctgcta atgtattttg gagtttaagg      5400
     aagttttctt ttcccatcac attgttaaat tgttctttat ttgttgcttt tttgttattg      5460
     aataaacatc gttattattc taattcctta tttcgcatcg aatatttttt ttttaatatt      5520
     tgcgataggt ctattatgga tagagttttc gcgataggtc tattgtaggt ttcggaacaa      5580
     gcctattatg agtaaaatcg tcctcaattg gtctacaata ggtctattgc agaagtttgt      5640
     tcgcgatagg cctattattg gtctataata ggcttcgtgc catgtaccca aatcacctac      5700
     gcgcgaacca tttttcacct ataatagatc ttgcgcgaat cacctgtg                   5748
//
