CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                           *
CC   REPBASE UPDATE                                          *
CC   (C) 1997-2003                                           * 
CC   Genetic Information Research Institute                  *
CC   All rights reserved                                     *
CC                                                           *
CC   A REFERENCE COLLECTION OF HUMAN REPETITIVE SUBFAMILIES  *
CC   RELEASE 1.1.3; JANUARY 2003                             *
CC                                                           *
CC   Edited by J. Jurka                                      *
CC                                                           *
CC   OTHER ACTIVE CONTRIBUTORS:                              *
CC   Walichiewicz, J., Klonowski, P.                         *
CC                                                           *
CC   Supported in part by N.I.H. grant 1P41LM06252-01.       *
CC                                                           *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   FLA       repbase; DNA; xxx; 133 BP.
CC   FLA DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   31-JUL-2000 (Rel. 1.0, Last updated, Version 2)
XX
DE   FLA subfamily - a consensus.
XX
KW   Repetitive sequence; FLA.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-133
RC   [1]
RA   Jurka J., Zuckerkandl E.;
RT   "Free left arms as precursor molecules in the evolution of
RT   Alu sequences";
RL   J. Mol. Evol. 33, 49-56 (1991)
XX
RN   [2]
RP   1-133
RC   [2]
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   FLA is a heterogenous family composed of at least 2 subfamilies.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 134 BP; 38 A; 35 C; 42 G; 18 T; 1 other;
     ggccgggcgc ggtggcwcac gcctgtaatc ccagctactt gggaggctga ggcgggagga        60
     tcgcttgagc ccaggagttc gagaccagcc tgggcaacat agcgagaccc cgtctctaaa       120
     aaaaaaaaaa aaaa                                                         134
//
ID   FLAM_A    repbase; DNA; xxx; 142 BP.
CC   FLAM_A DNA
XX
AC   ;
XX
DT   31-JUL-2000 (Rel. 1.0, Created)
DT   31-JUL-2000 (Rel. 1.0, Last updated, Version 1)
XX
DE   Free left Alu monomer A.
XX
KW   FLA; FLAM_A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-142
RC   [1]
RA   Quentin Y.;
RT   "Fusion of a free left Alu monomer and a free right Alu monomer 
RT   at the origin of the Alu family in the primate genomes.";
RL   Nucl. Acids. Res. 20, 487-93 (1992)
XX
RN   [2]
RP   1-142
RC   [2]
RA   Quentin Y.;
RT   "Origin of the Alu family: Alu like monomers gave birth to the left
RT   and right arms of the Alu elements.";
RL   Nucleic Acids Res. 20, 3397-401 (1992)
XX
RN   [3]
RP   1-142
RC   [3]
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   [1,2] (Consensus)
XX
SQ   Sequence 142 BP; 45 A; 36 C; 44 G; 17 T; 0 other;
     gccgggcgcg gtggcgcgcg cctgtagtcc cagctactcg ggaggctgag gcgggaggat        60
     cgcttgagcc caggagttcg agaccagcct gggcaacata gcgagacccc gtctctaaaa       120
     aaaaaaaaaa aaaaaaaaaa aa                                                142
//
ID   FLAM_C    repbase; DNA; xxx; 143 BP.
CC   FLAM_C DNA
XX
AC   ;
XX
DT   31-JUL-2000 (Rel. 1.0, Created)
DT   31-JUL-2000 (Rel. 1.0, Last updated, Version 1)
XX
DE   Free left Alu monomer C.
XX
KW   FLA; FLAM_C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-143
RC   [1]
RA   Quentin Y.;
RT   "Origin of the Alu family: Alu like monomers gave birth to the left
RT   and right arms of the Alu elements.";
RL   Nucleic Acids Res. 20, 3397-401 (1992)
XX
RN   [2]
RP   1-143
RC   [2]
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 143 BP; 47 A; 36 C; 41 G; 18 T; 1 other;
     rgccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggagga        60
     tcgcttgagc ccaggagttc gagaccagcc tgggcaacat agcgagaccc cgtctctaaa       120
     aaaaaaaaaa aaaaaaaaaa aaa                                               143
//
ID   AluJo     repbase; DNA; xxx; 283 BP.
CC   AluJo DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Jo subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-J; AluJ; Alu-Jo; AluJo.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-283
RC   [1] 
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 283 BP; 60 A; 81 C; 96 G; 46 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggagga        60
     ttgcttgagc ccaggagttc gagaccagcc tgggcaacat agcgagaccc cgtctctaca       120
     aaaaatacaa aaattagccg ggcgtggtgg cgcgcgcctg tagtcccagc tactcgggag       180
     gctgaggcag gaggatcgct tgagcccagg agttcgaggc tgcagtgagc tatgatcgcg       240
     ccactgcact ccagcctggg cgacagagcg agaccctgtc tca                         283
//
ID   AluJb     repbase; DNA; xxx; 283 BP.
CC   AluJb DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Jb subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-J; AluJ; Alu-Jb; AluJb.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-283
RC   [1] 
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 283 BP; 59 A; 82 C; 98 G; 44 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggagga        60
     tcacttgagc ccaggagttc gagaccagcc tgggcaacat ggtgaaaccc cgtctctaca       120
     aaaaatacaa aaattagccg ggcgtggtgg cgcgcgcctg tagtcccagc tactcgggag       180
     gctgaggcag gaggatcgct tgagcccggg aggtcgaggc tgcagtgagc cgtgatcgcg       240
     ccactgcact ccagcctggg cgacagagcg agaccctgtc tca                         283
//
ID   AluSc     repbase; DNA; xxx; 280 BP.
CC   AluSc DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sc subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sc; AluSc.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-280
RC   [1]
RA   Jurka J., Smith T.;
RT   "A fundamental division in the Alu family of repeated sequences";
RL   Proc. Natl. Acad. Sci. USA 85, 4775-4778 (1988)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 280 BP; 62 A; 80 C; 94 G; 44 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aagagatcga gaccatcctg gccaacatgg tgaaaccccg tctctactaa       120
     aaatacaaaa attagctggg cgtggtggcg cgcgcctgta gtcccagcta ctcgggaggc       180
     tgaggcagga gaatcgcttg aacccgggag gcggaggttg cagtgagccg agatcgcgcc       240
     actgcactcc agcctggcga cagagcgaga ctccgtctca                             280
//
ID   AluSg     repbase; DNA; xxx; 281 BP.
CC   AluSg DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sg subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sg; AluSg.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-281
RC   [1]
RA   Jurka J., Milosavljevic A.;
RT   "Reconstruction and analysis of human Alu genes";
RL   J. Mol. Evol. 32, 105-121 (1991)
XX
RN   [2]
RP   1-281
RC   [2] 
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 281 BP; 61 A; 81 C; 96 G; 43 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagttcga gaccagcctg gccaacatgg tgaaaccccg tctctactaa       120
     aaatacaaaa attagccggg cgtggtggcg cgcgcctgta atcccagcta ctcgggaggc       180
     tgaggcagga gaatcgcttg aacccgggag gcggaggttg cagtgagccg agatcgcgcc       240
     actgcactcc agcctgggcg acagagcgag actccgtctc a                           281
//
ID   AluSp     repbase; DNA; xxx; 284 BP.
CC   AluSp DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sp subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sp; AluSp.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-284
RC   [1]
RA   Jurka J., Milosavljevic A.;
RT   "Reconstruction and analysis of human Alu genes";
RL   J. Mol. Evol. 32, 105-121 (1991)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 284 BP; 65 A; 80 C; 94 G; 45 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacctgagg tcgggagttc gagaccagcc tgaccaacat ggagaaaccc cgtctctact       120
     aaaaatacaa aaattagccg ggcgtggtgg cgcatgcctg taatcccagc tactcgggag       180
     gctgaggcag gagaatcgct tgaacccggg aggcggaggt tgcggtgagc cgagatcgcg       240
     ccattgcact ccagcctggg caacaagagc gaaactccgt ctca                        284
//
ID   AluSq     repbase; DNA; xxx; 284 BP.
CC   AluSq DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sq subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sq; AluSq.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-284
RC   [1]
RA   Jurka J., Milosavljevic A.;
RT   "Reconstruction and analysis of human Alu genes";
RL   J. Mol. Evol. 32, 105-121 (1991)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 284 BP; 64 A; 80 C; 95 G; 45 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggtgga        60
     tcacctgagg tcaggagttc gagaccagcc tggccaacat ggtgaaaccc cgtctctact       120
     aaaaatacaa aaattagccg ggcgtggtgg cgggcgcctg taatcccagc tactcgggag       180
     gctgaggcag gagaatcgct tgaacccggg aggcggaggt tgcagtgagc cgagatcgcg       240
     ccactgcact ccagcctggg caacaagagc gaaactccgt ctca                        284
//
ID   AluSx     repbase; DNA; xxx; 283 BP.
CC   AluSx DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sx subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sx; AluSx.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-283
RC   [1]
RA   Jurka J., Milosavljevic A.;
RT   "Reconstruction and analysis of human Alu genes";
RL   J. Mol. Evol. 32, 105-121 (1991)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 283 BP; 61 A; 82 C; 96 G; 44 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacctgagg tcaggagttc gagaccagcc tggccaacat ggtgaaaccc cgtctctact       120
     aaaaatacaa aaattagccg ggcgtggtgg cgcgcgcctg taatcccagc tactcgggag       180
     gctgaggcag gagaatcgct tgaacccggg aggcggaggt tgcagtgagc cgagatcgcg       240
     ccactgcact ccagcctggg cgacagagcg agactccgtc tca                         283
//
ID   AluSz     repbase; DNA; xxx; 283 BP.
CC   AluSz DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sz subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-S; Alu-Sz; AluSz.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-283
RC   [1]
RA   Jurka J., Milosavljevic A.;
RT   "Reconstruction and analysis of human Alu genes";
RL   J. Mol. Evol. 32, 105-121 (1991)
XX
RN   [2]
RP   1-283
RC   [2] 
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   .
XX
CC   [2] (Consensus)
XX
SQ   Sequence 283 BP; 61 A; 81 C; 96 G; 45 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacttgagg tcaggagttc gagaccagcc tggccaacat ggtgaaaccc cgtctctact       120
     aaaaatacaa aaattagccg ggcgtggtgg cgcgcgcctg taatcccagc tactcgggag       180
     gctgaggcag gagaatcgct tgaacccggg aggcggaggt tgcagtgagc cgagatcgcg       240
     ccactgcact ccagcctggg cgacagagcg agactccgtc tca                         283
//
ID   AluY      repbase; DNA; xxx; 281 BP.
CC   AluY DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Y subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sb; Alu-Y; AluY.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-281
RC   [1]
RA   Willard C., Nguyen H.T., Schmid C.W.;
RT   "Existence of at least three distinct Alu subfamilies";
RL   J. Mol. Evol. 26, 180-186 (1987)
XX
RN   [2]
RP   1-281
RC   [2]
RA   Jurka J., Smith T.;
RT   "A fundamental division in the Alu family of repeated sequences";
RL   Proc. Natl. Acad. Sci. USA 85, 4775-4778 (1988)
XX
RN   [3]
RP   1-281
RC   [3]
RA   Batzer M.A., Kilroy G.E., Richard P.E., Shaikh T.H., Desselle T.D.,
RA   Hoppens C.L., Deininger P.L.;
RT   "Structure and variability of recently inserted Alu family members";
RL   Nucleic Acids Res. 18, 6793-6798 (1990)
XX
CC   .
XX
CC   [2] (Consensus)
XX
SQ   Sequence 281 BP; 61 A; 80 C; 98 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgtggtggc gggcgcctgt agtcccagct actcgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagatcgcgc       240
     cactgcactc cagcctgggc gacagagcga gactccgtct ca                          282
//
ID   AluYa5    repbase; DNA; xxx; 281 BP.
CC   AluYa5 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Ya5 subfamily - a consensus.
XX
KW   Repetitive sequence; HS; PV; Alu-Ya5; AluYa5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-281
RC   [1]
RA   Deininger P.L., Slagel V.K.;
RT   "Recently amplified Alu family members share a common parental
RT   Alu sequence";
RL   Mol. Cell. Biol. 8, 4566-4569 (1988)
XX
RN   [2]
RP   1-281
RC   [2]
RA   Batzer M.A., Kilroy G.E., Richard P.E., Shaikh T.H., Desselle T.D.,
RA   Hoppens C.L., Deininger P.L.;
RT   "Structure and variability of recently inserted Alu family members";
RL   Nucleic Acids Res. 18, 6793-6798 (1990)
XX
RN   [3]
RP   1-281
RC   [3]
RA   Matera A.G., Hellmann U., Schmid C.W.;
RT   "A transpositionally and transcriptionally competent Alu subfamily.";
RL   Mol. Cell. Biol. 10, 5424-5432 (1990)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 281 BP; 63 A; 80 C; 96 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcccg gctaaaacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgtagtggc gggcgcctgt agtcccagct acttgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagatcccgc       240
     cactgcactc cagcctgggc gacagagcga gactccgtct ca                          282
//
ID   AluYa8    repbase; DNA; xxx; 280 BP.
CC   AluYa8 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Ya8 subfamily - a consensus.
XX
KW   Repetitive sequence; HS-2; PV-minor; Alu-Ya8; AluYa8.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-280
RC   [1]
RA   Batzer M.A., Kilroy G.E., Richard P.E., Shaikh T.H., Desselle T.D.,
RA   Hoppens C.L., Deininger P.L.;
RT   "Structure and variability of recently inserted Alu family members";
RL   Nucleic Acids Res. 18, 6793-6798 (1990)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 280 BP; 62 A; 80 C; 96 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcccg gctaaaacgg tgaaaccccg tctctactaa       120
     aactacaaaa aatagccggg cgtagtggcg ggcgcctgta gtcctagcta cttgggaggc       180
     tgaggcagga gaatggcgtg aacccgggag gcggagcttg cagtgagccg agatcccgcc       240
     actgcactcc agcctgggcg acagagcgag actccgtctc a                           281
//
ID   AluYb8    repbase; DNA; xxx; 288 BP.
CC   AluYb8 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Yb8 subfamily - a consensus.
XX
KW   Repetitive sequence; Sb2; Alu-Yb8; AluYb8.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-288
RC   [1]
RA   Jurka J.;
RT   "A new subfamily of recently retroposed Alu repeats";
RL   Nucleic Acids Res. 21, 2252 (1993)
XX
RN   [2]
RP   1-288
RC   [2]
RA   Hutchinson G.B., Andrew S.E., McDonald H., Goldberg Y.P., Graharn R.,
RA   Rommens J.R., Hayden M.R.;
RT   "An Alu element retroposition in two families with Huntington disease
RT   defines a new active Alu subfamily";
RL   Nucleic Acids Res. 21, 3379-3383 (1993)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 288 BP; 63 A; 79 C; 101 G; 45 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggtgga        60
     tcatgaggtc aggagatcga gaccatcctg gctaacaagg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgcggtggc gggcgcctgt agtcccagct actcgggagg       180
     ctgaggcagg agaatggcgt gaacccggga agcggagctt gcagtgagcc gagattgcgc       240
     cactgcagtc cgcagtccgg cctgggcgac agagcgagac tccgtctca                   289
//
ID   AluYb9    repbase; DNA; xxx; 282 BP.
CC   AluYb9 DNA
XX
AC   ;
XX
DT   20-NOV-2001 (Rel. 1.0, Created)
DT   20-NOV-2001 (Rel. 1.0, Last updated, Version 1)
XX
DE   AluYb9 subfamily - a consensus.
XX
KW   Repetitive sequence; AluSb2; AluYb8; AluYb9.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-282
RC   [1] (bases 1 to 282)
RA   Roy-Engel A.M., Carrol M.L., Vogel E., Garber R.K., Nguyen S.V.,
RA   Salem A.-H., Batzer M.A., Deininger P.L.;
RT   "Alu insertion polymorphism for the study of human genomic diversity.";
RL   Genetics 159: 279-290 (2001).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 282 BP; 64 A; 78 C; 98 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggtgga        60
     tcatgaggtc aggagatcga gaccatcctg gctaacaagg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgcggtggc gggcgcctgt agtcccagct actggggagg       180
     ctgaggcagg agaatggcgt gaacccggga agcggagctt gcagtgagcc gagattgcgc       240
     cactgcagtc cgcagtccgg cctgggcgac agagcgagac tccgtctca                   289
//
ID   AluYc1    repbase; DNA; xxx; 282 BP.
CC   AluYc1 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-NOV-2001 (Rel. 1.0, Last updated, Version 2)
XX
DE   AluYc1 subfamily - a consensus.
XX
KW   Repetitive sequence; AluSb0; AluYa1; AluYc1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-282
RC   [1] (bases 1 to 282)
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
RN   [2]
RP   1-282
RC   [2]
RA   Roy-Engel A.M., Carrol M.L., Vogel E., Garber R.K., Nguyen S.V.,
RA   Salem A.-H., Batzer M.A., Deininger P.L.;
RT   "Alu insertion polymorphism for the study of human genomic diversity.";
RL   Genetics 159: 279-290 (2001).
XX
CC   Original name AluSb0 changed to AluYa1 by [1].
CC   Name changed from AluYa1 to AluYc1 by [2].
XX
CC   [1] (Consensus)
XX
SQ   Sequence 282 BP; 63 A; 80 C; 97 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgtggtagc gggcgcctgt agtcccagct actcgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagatcgcgc       240
     cactgcactc cagcctgggc gacagagcga gactccgtct ca                          282
//
ID   AluYc2    repbase; DNA; xxx; 282 BP.
CC   AluYc2 DNA
XX
AC   ;
XX
DT   20-NOV-2001 (Rel. 1.0, Created)
DT   20-NOV-2001 (Rel. 1.0, Last updated, Version 1)
XX
DE   AluYc2 subfamily - a consensus.
XX
KW   Repetitive sequence; AluSb0; AluYa1; AluYc1; AluYc2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-282
RC   [1] (bases 1 to 282)
RA   Roy-Engel A.M., Carrol M.L., Vogel E., Garber R.K., Nguyen S.V.,
RA   Salem A.-H., Batzer M.A., Deininger P.L.;
RT   "Alu insertion polymorphism for the study of human genomic diversity.";
RL   Genetics 159: 279-290 (2001).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 282 BP; 64 A; 79 C; 97 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacaagg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgtggtagc gggcgcctgt agtcccagct actcgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagatcgcgc       240
     cactgcactc cagcctgggc gacagagcga gactccgtct ca                          282
//
ID   AluYd2    repbase; DNA; xxx; 270 BP.
CC   AluYd2 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-NOV-2001 (Rel. 1.0, Last updated, Version 3)
XX
DE   AluYd2 subfamily - a consensus.
XX
KW   Repetitive sequence; AluYb1; AluYc, AluYd2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-270
RC   [1]  (bases 1 to 270)
RA   Jurka J.;
RT   ".";
RL   Direct submission, 1997
XX
RN   [2]
RP   1-270
RC   [2]  (bases 1 to 270)
RA   Smit A.F.A.;
RT   ".";
RL   (Update 2001)
XX
CC   Arian Smit corrected one bp and renamed AluYb1 to AluYc. However,
CC   another subfamily AluSb0 was renamed to AluYc1 in the literature. 
CC   To avoid overlaps we rename AluYc subfamily to AluYd2. AluYd2 differs 
CC   from AluY at 2 positions.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 270 BP; 59 A; 77 C; 96 G; 38 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccacggtg aaaccccgtc tctactaaaa atacaaaaaa       120
     ttagccgggc gcggtggcgg gcgcctgtag tcccagctac tcgggaggct gaggcaggag       180
     aatggcgtga acccgggagg cggagcttgc agtgagccga gatcgcgcca ctgcactcca       240
     gcctgggcga cagagcgaga ctccgtctca                                        270
//
ID   AluYd3    repbase; DNA; xxx; 270 BP.
CC   AluYd3 DNA
XX
AC   ;
XX
DT   20-NOV-2001 (Rel. 1.0, Created)
DT   20-NOV-2001 (Rel. 1.0, Last updated, Version 1)
XX
DE   AluYd3 subfamily - a consensus.
XX
KW   Repetitive sequence; AluYb1; AluYc; AluYc3; AluYc2; AluYd3.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-270
RC   [1]  (bases 1 to 270)
RA   Jurka J.;
RT   ".";
RL   Direct submission (November 19, 2001)
XX
CC   Subfamily AluYd3 differs at 3 positions from AluY.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 270 BP; 59 A; 76 C; 96 G; 39 T; 0 other;
     ggccgggcgc ggtggctcac gcttgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccacggtg aaaccccgtc tctactaaaa atacaaaaaa       120
     ttagccgggc gcggtggcgg gcgcctgtag tcccagctac tcgggaggct gaggcaggag       180
     aatggcgtga acccgggagg cggagcttgc agtgagccga gatcgcgcca ctgcactcca       240
     gcctgggcga cagagcgaga ctccgtctca                                        270
//
ID   AluYd3a1  repbase; DNA; xxx; 271 BP.
CC   AluYd3a1 DNA
XX
AC   ;
XX
DT   15-MAR-2001 (Rel. 1.0, Created)
DT   20-NOV-2001 (Rel. 1.0, Last updated, Version 2)
XX
DE   AluYd3a1 subfamily - a consensus.
XX
KW   Repetitive sequence; AluYb1; AluYc; AluYc3; AlyYc2; AluYd3a1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-271
RC   [1]  (bases 1 to 271)
RA   Smit A.F.A.;
RT   ".";
RL   (Submitted 2001)
XX
RN   [2]
RP   1-271
RC   [2]
RA   Jurka J.;
RT   ".";
RL   (Update 2001)
XX
CC   Subfamily AluYd3 differs at 3 positions from AluY and has a single
CC   "A" insertion after position 164. Therefore it is classified
CC   as a variant of AluYd3 and renamed to AluYd3a1 [2].
XX
CC   [1] (Consensus)
XX
SQ   Sequence 271 BP; 60 A; 76 C; 96 G; 39 T; 0 other;
     ggccgggcgc ggtggctcac gcttgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccacggtg aaaccccgtc tctactaaaa atacaaaaaa       120
     ttagccgggc gcggtggcgg gcgcctgtag tcccagctac tcggagaggc tgaggcagga       180
     gaatggcgtg aacccgggag gcggagcttg cagtgagccg agatcgcgcc actgcactcc       240
     agcctgggcg acagagcgag actccgtctc a                                      271
//
ID   AluYd8    repbase; DNA; xxx; 270 BP.
CC   AluYd8 DNA
XX
AC   ;
XX
DT   15-MAR-2001 (Rel. 1.0, Created)
DT   20-NOV-2001 (Rel. 1.0, Last updated, Version 2)
XX
DE   AluYd8 subfamily - a consensus.
XX
KW   Repetitive sequence; AluYb1; AluYc; AluYc5; ALUYc6; AluYd8.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-270
RC   [1]
RA   Smit A.F.A.;
RT   ".";
RL   (Submitted 2001)
XX
RN   [2]
RP   1-270
RC   [2]  (bases 1 to 270)
RA   Jurka J.;
RT   ".";
RL   (Update 2001)
XX
CC   The consensus originally called AluYc5 by A.F.A. Smit
CC   differs from AluY at 8 positions. The consensus was 
CC   revised and renamed by [2].
XX
CC   [1] (Consensus)
XX
SQ   Sequence 270 BP; 62 A; 77 C; 94 G; 37 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccacggtg aaaccccgtc tctactaaaa atacaaaaaa       120
     ttagccgggc gcagtggcgg gcgcctgtag tcccagctac tcgggaggct gaggcaggag       180
     aatggcgtga acccggaagg cggagcttgc agtgagcgga gatcgcgcca cagcactccc       240
     gcctgggcga cagaacgaga ctccgtctca                                        270
//
ID   AluYe5    repbase; DNA; xxx; 281 BP.
CC   AluYe5 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   27-JAN-2003 (Rel. 1.1, Last updated, Version 3)
XX
DE   AluYe5 subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Yb5; AluYb5; AluYe; AluYe5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-281
RC   [1]  (bases 1 to 281)
RA   Jurka J.;
RT   ".";
RL   Direct submission (February 03, 1998)
XX
RN   [2]
RP   1-281
RC   [2] (bases 1 to 281)
RA   Jurka J., Krnjajic M., Kapitonov V., Stenger J.E., Kokhanyy O.;
RT   "Active Alu elements are passed primarily through paternal germlines.";
RL   Theor. Popul. Biol. 2002 Jun;61(4):519-30.
RL   PUBMED  12167372
XX
CC   Differs from other Y subfamilies at the following positions, relative
CC   to ALU-Sx consensus sequence: A145, extra C after 205, G211, C220, AG
CC   deletion at positions 267-268. The youngest copy found to date is at
CC   Genbank locus Z69705 (2826-3110).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 281 BP; 61 A; 82 C; 98 G; 40 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgaggtggc gggcgcctgt agtcccagct actcgggagg       180
     ctgaggcagg agaatggcgt gaaccccggg gggcggagcc tgcagtgagc cgagatcgcg       240
     ccactgcact ccagcctggg cgacagcgag actccgtctc a                           281
//
ID   LTR26B    repbase; DNA; xxx; 531 BP.
CC   LTR26B DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   LTR from human endogenous retrovirus-like sequence.
XX
KW   Long terminal repeat; MER4I-group; LTR26; LTR26B.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-531
RC   [1]  (bases 1 to 531)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   LTR26B is a subfamily of LTR26.
CC   The average identity of LTR26B sequences to the consensus sequence
CC   is about 88%.
CC   There is 71% identity between LTR26B and LTR26 consensus sequences.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 531 BP; 146 A; 148 C; 94 G; 143 T; 0 other;
     tgaagccatc ctcacagggt taacaagaat tctggacaga aatatagtta taattaagca        60
     ttaatcaggc tgcactttga cccacttcct tgtaaccaaa agtcacataa cactagatac       120
     tgaccatttg catccccatt gttcctatag ataggatttc tgacgttaga atcataaggc       180
     ttttgtttaa gaattgctta agcagatcct gaattccagt ggaacagctg acgccaacca       240
     gtttgaagac ccccacagag gaaccgaatc agcatgagaa tacagtttct tcatctccct       300
     gtcccatgac ttcaccctgc actcttcgac caatcaatga tctccacact tcggcccact       360
     ccaaaacctt taaaaaccct agccccaaac tcctcgggga gatggatttg aggtttcctc       420
     ccatctcctc attcggcggc cctacgatta aacctctttc tctgctgcaa cctggtgtct       480
     cggcgtattg acttgccgtg tgcatcgggc aacgaaccta ttacggttac a                531
//
ID   LTR26C    repbase; DNA; xxx; 539 BP.
CC   LTR26C DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   LTR from human endogenous retrovirus-like sequence.
XX
KW   Long terminal repeat; MER4I-group; LTR26; LTR26C.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-539
RC   [1]  (bases 1 to 539)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   LTR26C is a subfamily of LTR26.
CC   The average identity of LTR26C sequences to its consensus sequence
CC   is about 88%.
CC   There is 71% identity between LTR26C and LTR26 consensus sequences.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 539 BP; 147 A; 149 C; 95 G; 148 T; 0 other;
     tgaagccgtc ctcatagggt taacaagaat tctggacaga aatatagtta taattaagca        60
     ttaatcaggc tgcactttga cccacttcct tgtaactgaa agtcacgtag cactagatac       120
     tgaccatttg catccccatt gttcctatag ataggatttc tgacattaga atcataaggc       180
     ttttgtttaa gaattgctta agatattttt cagatcccga attccagcga aacagctgat       240
     gccaaccagt ttgaagaccc ccacagagga accgaatcag catgagaata cagtttcttc       300
     atctccctgt cccatgactt caccctgcac tcttcgacca atcaacgatc tccacacttc       360
     ggcccactcc aaaaccctta aaaaccctag ccccaaactc ctcggggaga cggatttgag       420
     gtttcctccc atctcctcat tcggcagccc tacgattaaa cctctttctc tgctgcaacc       480
     tggtgtctcg gtgtattgac ttgccgtgtg catcgggcaa cgaacctatt acggttaca        539
//
ID   LTR26D    repbase; DNA; xxx; 604 BP.
CC   LTR26D DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   LTR from human endogenous retrovirus-like sequence.
XX
KW   Long terminal repeat; MER4I-group; LTR26; LTR26D.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-604
RC   [1]  (bases 1 to 604)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   LTR26D is a subfamily of LTR26.
CC   The average identity of LTR26D sequences to its consensus sequence
CC   is about 88%.
CC   There is 70% identity between LTR26D and LTR26 consensus sequences.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 604 BP; 161 A; 161 C; 110 G; 172 T; 0 other;
     tgaaaccatc cccacagggt tgacaagaat tgcatgccag gttctggaca gaaatatagt        60
     tataattaag cattaatcag gctgcactct ggcccacttc cttgttgcta aaagtcacgt       120
     agcactagat actgaccatt tgcatcccca ttgttcctat agataggatt tctgacatta       180
     gggtcatagg actgtttaag aattgatttg catccccatt gttcctatag acaggatctc       240
     tgacattaga atcataaggc ttttgtttaa gaatcgctta agatgttttt cagacctcaa       300
     attccagcaa ccagtttgaa gacccccaca gaggaacggg atcagcatga gaatacagct       360
     tcttcatctc cctgtcccat gacttcaccc tgcactcttc gaccaatcaa cgatctccac       420
     acttcggccc actccaaaac ccttaaaaac cctagcccca aattcctcgg ggagatggat       480
     ttgaggtttc ctcccatctc ctcattcagt gaccctacga ttaaacctct ttctctgctg       540
     caacctggtg tctcggcgta ttgacttgct gtgtgcatcg ggcaatgaac ctattacggt       600
     taca                                                                    604
//
ID   AluYa1    repbase; DNA; xxx; 282 BP.
CC   AluYa1 DNA
XX
AC   ;
XX
DT   09-SEP-2002 (Rel. 1.1, Created)
DT   09-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYa1 subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Y; AluYa1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-282
RC   [1]
RA   Jurka J., Krnjajic M., Kapitonov V., Stenger J.E., Kokhanyy O.;
RT   "Active Alu elements are passed primarily through paternal germlines.";
RL   Theor. Popul. Biol. 2002 Jun;61(4):519-30.
RL   PUBMED  12167372
XX
CC   [1] (Consensus)
XX
SQ   Sequence 282 BP; 62 A; 81 C; 97 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgtggtggc gggcgcctgt agtcccagct actcgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagatcccgc       240
     cactgcactc cagcctgggc gacagagcga gactccgtct ca                          282
//
ID   AluYa4    repbase; DNA; xxx; 282 BP.
CC   AluYa4 DNA
XX
AC   ;
XX
DT   09-SEP-2002 (Rel. 1.1, Created)
DT   09-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYa4 subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Y; AluYa4.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-282
RC   [1]
RA   Jurka J., Krnjajic M., Kapitonov V., Stenger J.E., Kokhanyy O.;
RT   "Active Alu elements are passed primarily through paternal germlines.";
RL   Theor. Popul. Biol. 2002 Jun;61(4):519-30.
RL   PUBMED  12167372
XX
CC   [1] (Consensus)
XX
SQ   Sequence 282 BP; 64 A; 79 C; 97 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcccg gctaaaacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgtagtggc gggcgcctgt agtcccagct acttgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagatcgcgc       240
     cactgcactc cagcctgggc gacagagcga gactccgtct ca                          282
//
ID   AluYb3a1  repbase; DNA; xxx; 282 BP.
CC   AluYb3a1 DNA
XX
AC   ;
XX
DT   09-SEP-2002 (Rel. 1.1, Created)
DT   09-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYb3a1 subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Y; AluYb3a1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-282
RC   [1]
RA   Jurka J., Krnjajic M., Kapitonov V., Stenger J.E., Kokhanyy O.;
RT   "Active Alu elements are passed primarily through paternal germlines.";
RL   Theor. Popul. Biol. 2002 Jun;61(4):519-30.
RL   PUBMED  12167372
XX
CC   [1] (Consensus)
XX
SQ   Sequence 282 BP; 62 A; 77 C; 99 G; 44 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggtgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgtggtggc gggcgcctgt agtcccagct actcgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagattgcgc       240
     cactgcagtc cagcctgggc gacagagcga gactccgtct ca                          282
//
ID   AluYb3a2  repbase; DNA; xxx; 282 BP.
CC   AluYb3a2 DNA
XX
AC   ;
XX
DT   09-SEP-2002 (Rel. 1.1, Created)
DT   09-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYb3a2 subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Y; AluYb3a2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-282
RC   [1]
RA   Jurka J., Krnjajic M., Kapitonov V., Stenger J.E., Kokhanyy O.;
RT   "Active Alu elements are passed primarily through paternal germlines.";
RL   Theor. Popul. Biol. 2002 Jun;61(4):519-30.
RL   PUBMED  12167372
XX
CC   [1] (Consensus)
XX
SQ   Sequence 282 BP; 63 A; 78 C; 100 G; 41 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgcggtggc gggcgcctgt agtcccagct actcgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagatagcgc       240
     cactgcagtc cggcctgggc gaaagagcga gactccgtct ca                          282
//
ID   AluYf1    repbase; DNA; xxx; 282 BP.
CC   AluYf1 DNA
XX
AC   ;
XX
DT   09-SEP-2002 (Rel. 1.1, Created)
DT   09-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYf1 subfamily - a consensus.
XX
KW   Repetitive sequence; AluYf; AluYf1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-282
RC   [1]
RA   Jurka J., Krnjajic M., Kapitonov V., Stenger J.E., Kokhanyy O.;
RT   "Active Alu elements are passed primarily through paternal germlines.";
RL   Theor. Popul. Biol. 2002 Jun;61(4):519-30.
RL   PUBMED  12167372
XX
CC   [1] (Consensus)
XX
SQ   Sequence 282 BP; 62 A; 80 C; 99 G; 41 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgtggtggc gggcgcctgt agtcccagct acgcgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagatcgcgc       240
     cactgcactc cagcctgggc gacagagcga gactccgtct ca                          282
//
ID   AluYg6    repbase; DNA; xxx; 282 BP.
CC   AluYg6 DNA
XX
AC   ;
XX
DT   09-SEP-2002 (Rel. 1.1, Created)
DT   09-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYg6 subfamily - a consensus.
XX
KW   Repetitive sequence; AluYg; AluYg6.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-282
RC   [1]
RA   Jurka J., Krnjajic M., Kapitonov V., Stenger J.E., Kokhanyy O.;
RT   "Active Alu elements are passed primarily through paternal germlines.";
RL   Theor. Popul. Biol. 2002 Jun;61(4):519-30.
RL   PUBMED  12167372
XX
CC   [1] (Consensus)
XX
SQ   Sequence 282 BP; 66 A; 80 C; 94 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga gacgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcatggtggc gcgcgcctgt agtcccagct acacgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagtc gagatcgcgc       240
     cactgcactc cagcctgggc gacagagcga aactccgtct ca                          282
//
ID   AluYh9    repbase; DNA; xxx; 282 BP.
CC   AluYh9 DNA
XX
AC   ;
XX
DT   09-SEP-2002 (Rel. 1.1, Created)
DT   09-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYh9 subfamily - a consensus.
XX
KW   Repetitive sequence; AluYh; AluYh9.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-282
RC   [1]
RA   Jurka J., Krnjajic M., Kapitonov V., Stenger J.E., Kokhanyy O.;
RT   "Active Alu elements are passed primarily through paternal germlines.";
RL   Theor. Popul. Biol. 2002 Jun;61(4):519-30.
RL   PUBMED  12167372
XX
CC   [1] (Consensus)
XX
SQ   Sequence 282 BP; 59 A; 79 C; 102 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggcaga ggcgggcgga        60
     tcatgaggtc aggagatcga gaccatcctg gctaacgcgg tgaaaccccg cctctactaa       120
     aaatacaaaa aattagccgg gcgtggtggc gggcgcctgt ggtcccggct actcgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagct gaggtcgcgc       240
     cactgcaccc cagcctgggc gacagagcga gactccgtct ca                          282
//
ID   AluYi6    repbase; DNA; xxx; 283 BP.
CC   AluYi6 DNA
XX
AC   ;
XX
DT   09-SEP-2002 (Rel. 1.1, Created)
DT   09-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYi6 subfamily - a consensus.
XX
KW   Repetitive sequence; AluYi; AluYi6.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-283
RC   [1]
RA   Jurka J., Krnjajic M., Kapitonov V., Stenger J.E., Kokhanyy O.;
RT   "Active Alu elements are passed primarily through paternal germlines.";
RL   Theor. Popul. Biol. 2002 Jun;61(4):519-30.
RL   PUBMED  12167372
XX
CC   [1] (Consensus)
XX
SQ   Sequence 283 BP; 63 A; 80 C; 96 G; 44 T; 0 other;
     ggccgggcgc ggtggctcac gcttgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aaattagccg ggcgtgatgg cgggcgcctg tagtcccagc tactcgggag       180
     gctgaggcag gagaatggcg tgaacccggg aggcggagct tgcagtgagc cgagattgcg       240
     ccactgcact cccgcctggg ccacagagcg agactccgtc tca                         283
//
ID   AluYbc3a  repbase; DNA; xxx; 283 BP.
CC   AluYbc3a DNA
XX
AC   ;
XX
DT   13-SEP-2002 (Rel. 1.1, Created)
DT   13-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYbc3a: possible hybrid of AluYb3a and AluYc1 subfamilies -
DE   a consensus.
XX
KW   Repetitive sequence; AluYb3a; AluYc1; AluYbc3a.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-283
RC   [1]
RA   Jurka J.;
RT   "AluYbc3a: Alu Y sub(sub)family repetitive sequence from Homo sapiens.";
RL   Repbase Reports 2:(8) p. 3 (2002)
XX
CC   Active subfamily: 50-100 copies in the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 283 BP; 67 A; 77 C; 97 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aaattagccg ggcgtggtag cgggcgcctg tagtcccagc tactcgggag       180
     gctgaggcag gagaatggcg tgaacccggg aggcggagct tgcagtgagc caagatagcg       240
     ccactgcagt ccagcctggg cgaaagagcg agactccgtc tca                         283
//
ID   AluYe2    repbase; DNA; xxx; 280 BP.
CC   AluYe2 DNA
XX
AC   ;
XX
DT   13-SEP-2002 (Rel. 1.1, Created)
DT   13-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYe2 subfamily - a consensus.
XX
KW   Repetitive sequence; AluYe; AluYe2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-280
RC   [1]
RA   Jurka J.;
RT   "AluYe2: Alu Y sub(sub)family repetitive sequence from Homo sapiens.";
RL   Repbase Reports 2:(8) p. 4 (2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 280 BP; 62 A; 80 C; 97 G; 41 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgaggtggc gggcgcctgt agtcccagct actcgggagg       180
     ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagatcgcgc       240
     cactgcactc cagcctgggc gacagcgaga ctccgtctca                             280
//
ID   AluYf2    repbase; DNA; xxx; 284 BP.
CC   AluYf2 DNA
XX
AC   ;
XX
DT   13-SEP-2002 (Rel. 1.1, Created)
DT   13-SEP-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   AluYf2 subfamily - a consensus.
XX
KW   Repetitive sequence; AluYf; AluYf2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo 
XX
RN   [1]
RP   1-284
RC   [1]
RA   Jurka J.;
RT   "AluYf2: Alu Y sub(sub)family repetitive sequence from Homo sapiens.";
RL   Repbase Reports 2:(8) p. 5 (2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 284 BP; 65 A; 81 C; 98 G; 40 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacag tgaaaccccg tctctactaa       120
     aaaacacaaa aaaattagcc gggcgtggtg gcgggcgcct gtagtcccag ctacgcggga       180
     ggctgaggca ggagaatggc gtgaacccgg gaggcggagc ttgcagtgag ccgagatcgc       240
     gccactgcac tccagcctgg gcgacagagc gagactccgt ctca                        284
//
