ID   CELE45      repbase; DNA   ; CEL   ; 398 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans Cele45 repeat - a consensus.
XX
KW   MITE; CELE45.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-398
RA   Belknap R.W., Surzycki A.S.;
RT   "CELE45.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RP   1-398
RA   Jurka J.;
RT   "CELE45.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 398 BP; 106 A; 99 C; 84 G; 109 T; 0 other;
     actacttatt ttattgaatt tattaaatgt ttttcattta aaaaaaatta aagattaaag        60
     gacgatccgt tcttcaagtg ctatgcactg cggatctggg gttcaggtac actgcctggt       120
     ggtgatcacc tctgggctgt aatttaagcc acgtcctagc cggggactgt ggccgataat       180
     ccagtcgtgg attgctccac ttcccaatag aggctgggtg aacctagggg ggtgagacca       240
     gacttgaact cgtgacctcc agactgctag cagccaccac taccgactga gctatctgcc       300
     cccccccccc cccttgaaaa aagagacatt attcgtcatt ttttgtcagc ttatcaatca       360
     ctacgagtga ataaacaccg aaattgattt acagccca                               398
//
ID   CELE1       repbase; DNA   ; CEL   ; 307 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans Cele1 repeat - a consensus.
XX
KW   MITE; CELE1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-307
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(19), 8886-8890 (1995).
XX
RN   [2]
RP   1-307
RA   Jurka J.;
RT   "CELE1.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 307 BP; 122 A; 43 C; 43 G; 95 T; 4 other;
     aatgtagttt cgaaattgaa aaaaatcatt aaaaatgaat aaaaattyta taaartttct        60
     aacaattaaa tttgttatta cgggaacaca aaattctgag aatgcgtatt gcacaacata       120
     tttgacgcgc aaaatatctc gtagcgaaaa ctacagtaat tctttaaatg actactgtag       180
     cgcttgtgtc gatttacggg ctcgattttt gaaatgaatt waaattattt atcrataaaa       240
     taatatgaaa ttcaatttca aaaatcgagc ccgtaaatcg acacaagcgc tacagtagtc       300
     atttaaa                                                                 307
//
ID   HELICOPY1   repbase; DNA   ; CEL   ; 2595 BP.
XX
AC   .
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOPY1 is a nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HELICOP superfamily; RCA1; RCC9;
KW   RCD1; RC35; HELICOPY1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2595
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repqetitive
RT   DNA sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
RN   [2]
RP   1-2595
RA   V V., Jurka J.;
RT   "HELICOPY1.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   There are about 50 copies of HELICOPY1 in the C.elegans genome.
CC   They are ~97% identical to the consensus sequence.
CC   Several portions of HELICOPY1 have been reported previosly
CC   as the RCA1, RCD1, RC35 and RCC9 minisatellite like repeats [1].
CC   The authors [1] have noticed a coclustering of these repeats but
CC   did not find a right explanation to it.
XX
SQ   Sequence 2595 BP; 933 A; 349 C; 534 G; 777 T; 2 other;
     atcattamyt atatataaaa aaatacagtt cgtctgtcca tagtttgtag tctatgtagt        60
     ctttgtagtc tgtgacgtca cacccaaatg tcagtgagaa ttgtgggcgg ggcctgtcac       120
     ctacccttcg tggtgagacc catcgtggtg agacccttcg tggtgagacc catcgtggtg       180
     agacccatcg tggtgagacc cttcgtggtg agacccatcg tggtgagacc cttcgtggtg       240
     agacccacat ttttggcggg aaattcaaat tttcagtgaa aaaattttgg cgggaaattc       300
     aaattttcag tgaaaaaatt ttggcgggaa attcaaattt tcagtgaaaa aaattttggc       360
     gggaaattca aattttcagt gaaaaaaatt ttggcgggaa attcaaattt tcagtgaaaa       420
     aattttggcg ggaaattcaa attttcagtg aaaaaatttt ggcgggaaat tcaaattttc       480
     agtgaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt       540
     caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg       600
     gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa       660
     aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat       720
     tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg       780
     aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa       840
     ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca       900
     gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt       960
     caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg      1020
     gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa      1080
     aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat      1140
     tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg      1200
     aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa      1260
     ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca      1320
     gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaacaatttt ggcggaaaat      1380
     tccaatttct gagaaaaatc gagaaatgtc tgcaatgttc cagaagtttc tagaaaattc      1440
     gagaaaattc cggaatggtc cagaattttc tagaaaattc gggaaaactc tggaatattc      1500
     cagaactttc tagaaaattc gagaaaattc tggaatgttc cagaattttc tagaaaattc      1560
     gagaaaactc tggaatgttc cagaactttc tagaaaattc tagaaagttc tggaatggtc      1620
     cagaattttc tagaaaattc gggaaaactc tggaatattc cagaactttc tagaaaattc      1680
     gagaaaattc tgcaatgttc cagaattttc tagaaaattc gggaaaattc tggaatattc      1740
     cagaactttc tagaaaaatc gggaaaagtc ggcaatgttc tagaactttc tagaaaattc      1800
     gagaaaattc cggaatggtc cagaattttc tagaaaattc tagaaagttc tggaatggtc      1860
     cagaagtttc tagaaaattc gagaaaattc cggaatggtc cagaattttc tagaaaatcc      1920
     gagaaagttc tggaatggtc cagaattttc tagaaaattc gggaaaattc tggaatattc      1980
     cagaactttc tagaaaaatc gggaaaagtc tgcaatgttc cagaactctc taaaaaattc      2040
     gataaaattc tgaaatgttc aatttcgtgg aaaaattcaa gaaacttctg caaagttcta      2100
     cacggggttc tggctcgacc ccgcgctcca ttggacactg aaatggcggg aaaaaacttt      2160
     gaaatcgcaa gaggaatttt cacgcagcgc gttgaaaaaa gtgtatgcat ttgcgcgtga      2220
     cggtgtttct tcaagttttg atactcctag aatattctga agtttcaata attttaaaaa      2280
     aatatcaaaa attgttataa ttttcagaaa cgctcgccaa aaactttcgg aaaggaccgg      2340
     aaaatgtttc atatgatttg aagaacgtag agaaaattat acgttcaaga aatttagaaa      2400
     tagttccagg aaacttgagg ttttaagttg taattgctca gaacttagtt atataatatt      2460
     tatgttgctc gaaaatttcc ggtaaccagg gaaaaaacgt tccatctgca aagaaggctt      2520
     agaaaattta gaatttgatt tcaattttga gtacgccagt cggagcacgc gcttcagcgc      2580
     gtgcgaacgg ctggt                                                       2595
//
ID   HELICOPY4   repbase; DNA   ; CEL   ; 1857 BP.
XX
AC   .
XX
DT   22-DEC-2000 (Rel. 4.2, Created)
DT   22-DEC-2000 (Rel. 4.2, Last updated, Version 1)
XX
DE   HELICOPY4 is a non-autonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HELITRON superfamily; CERP1;
KW   HELICOPY4.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1686-1465
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226, 159-168 (1992).
XX
RN   [2]
RP   1-1857
RA   V V., Jurka J.;
RT   "HELICOPY4.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
CC   [2] (Consensus)
XX
CC   There are about 100 copies of HELICOPY4 in the C.elegans genome.
CC   They are ~97% identical to the consensus sequence.
CC   This family is a non-autonomous HELICOP/HELITRON-like DNA
CC   transposon.
CC   210-bp 5'-termini of HELICOPY4 and HELICOP2 are 92% identical.
CC   40-bp 3'-termini of these elements are 90% identical.
CC   CERP1, a satellite-like repeat identified previosly [1] is a
CC   portion of HELICOPY4 (position 1686-1465).
XX
SQ   Sequence 1857 BP; 599 A; 266 C; 430 G; 562 T; 0 other;
     atcattactt atatataaaa aaataattcc gtttgttcca tagtttgtag tctatgtagt        60
     ctttgtagtc tgtgacgtca cacccaaagt cactgagaat tgtgggcggg gtctgtcatc       120
     cttcgtggtg agacccatcg tggcgagacc catcgtggtg agacccatcg tggcgagacc       180
     catcgtggtg agacccatcg tggcgagacc cgtcgtggcg agacccatcg tggtgagacc       240
     catcgtggtg agacccatcg tggcgagacc catcgtggtg agacccatcg tggtgagacc       300
     catcgtggtg agacccaccg tggtgagacc cgtcgtggta agacccaaaa ttttggcggg       360
     aaatttaaat tttctgtgaa aaatattttg gcgggaaatt taaattttct gtgaaaaata       420
     ttttggcggg aaatttaaat tttctgtgaa aaatattttg gcgggaaatt taaattttct       480
     gagaaaaata ttttggcggg aaatttaaat tttctgtgaa aaatattttg gcgggaaatt       540
     taaattttct gtgaaaaata ttttggcggg aaatttaaat tttctgagaa aaatattttg       600
     gcgggaaatt taaattttct gtgaaaaata tttttgcggg aaatttaaat tttctgaaaa       660
     ttctaaaatt ctggaaatct agaatcttct ggaaatttcg aaaaaactag aaaaattggg       720
     aaaagtctgg aatgttccag aactttctag aaaaatcgag aaaattctgg aatgttccag       780
     aactttctag aaaaatcgag aaaattctgg aatgttccag aactttctag aaaaatcgag       840
     aaaattctgg aatgttccag aactttctag aaaaattggg aaaattctgg aatgttccag       900
     aactttctag aaaaatcggg aaaattctgg aatgttccag aactttctag aaaaattggg       960
     aaatttctgg aatgttccag aactttctag aaaaatcgag aaaattctgg aatgttccag      1020
     aactttctag aaaaatcggg aaaattctgg aatgttccag aactttctag aaaaatcggg      1080
     aaaattctgg aatgttccag aactttctag aaaaattggg aaaattctgg aatgttccag      1140
     aactttctag aaaaattggg aaaagtctgg aatgttccag aactttctag aaaaatcggg      1200
     aaaagtctgg aatgttccag aactttctag aaaaatcgag aaaattctgg aatgttccag      1260
     aactttctag aaaaatcgag aaaattctgg aatgttccag aactttctag aaaaatcgag      1320
     aaaattctgg aatgttccag aactttctag aaaaatcgag aaaattctgg aatgttccag      1380
     aactttctag aaaaatcgag aaaattctgg aatgttccga aaaattgagc ttagagcttt      1440
     agaagaggta gttatttggg agttgatggg ggatcaagtc aaggtactgt agtggtacta      1500
     taggggtact gtaggtatac ggtagggtta ctgtagtttt ggaaaaattg gcatttcgtc      1560
     ctttgaagag gtattgggtt aggagtcggt ggaggataat gtcaaggtac tgtagtggta      1620
     ttgtaaggtt actgtcttgg tcaaaaagta acagaaagtt ttcatactgt ctgtgaattt      1680
     ttgaaacatg catgtcgtag aaaaatacat acatgtaaca gtgccagtaa accgcgtttt      1740
     aagtgtttca agtttttttc atgatgagaa attttttgag tgattgaagg tatgtgtgtc      1800
     aaatactttt aatggtgcca gtcgttgccc gcgccgtagg cgcggtcagc ggctggt         1857
//
ID   CELE42      repbase; DNA   ; CEL   ; 220 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans CELE42 repetitive element (a consensus).
XX
KW   MITE; CELE42.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-220
RA   Belknap R.W.;
RT   "CELE42.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RP   1-220
RA   Jurka J.;
RT   "CELE42.";
RL   Direct Submission to Repbase Update (AUG-1999);.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 220 BP; 78 A; 51 C; 35 G; 54 T; 2 other;
     tcgtggtact ccacacggac aaatacattt agttttacaa ctaaaaacga gccgcgacgc        60
     gacacgcaac gcgccgtaaa tctaccccag atatggccga sccaaaatgg cctagttcgg       120
     caaactcttc catttcaatt tatgagggaa gccagaaatc cgtgaaatat ttagcaaaaa       180
     attcaaattt tttcagatat ttacatttaa atayccaaaa                             220
//
ID   HELICOP2    repbase; DNA   ; CEL   ; 5516 BP.
XX
AC   AC006730;
XX
DT   23-MAY-2000 (Rel. 4, Created)
DT   23-MAY-2000 (Rel. 4, Last updated, Version 1)
XX
DE   HELICOP2 is a DNA transposon.
XX
KW   DNA transposon; helicase; HELICOP superfamily; HELICOP2.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5516
RA   Kapitonov V.V., Jurka J.;
RT   "HELICOP2.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
DR   GenBank; AC006730; Positions   23892   18377.
XX
CC   HELICOP2 is a DNA transposon; it encodes a DNA helicase-like
CC   904-aa protein which is putatively involved in proliferation
CC   of HELICOP2 copies. There are about 100 nonautonomous elements
CC   in the genome, and they are 96% identical to HELICOP2.
CC   On average; these elements are 500-1500 bp long. In several
CC   cases, HELICOP2 forms 7-9kb satellite-like clusters composed
CC   from a ~200bp portion of HELICOP2.
CC   The HELICOP1 protein is encoded by 7 putative exons and its
CC   CDS is defined as:
CC   1834-1922; 1973-2235; 2431-2988, 3112-3296, 3657-3970, 4021-4294;
CC   4343-5374 .
CC   The HELICOP2 protein sequence:
CC   MNEFSQKTDFPSTSDSQEPVSKRTRSRFKSDSSGAERKRKQRGKESSEEREARHQYDQDR
CC   KRKKKASESKDELKVLLLKDRERKARERREAKGISDGPNYLGPMSKTCDHCKAVFFESKN
CC   FQSNIRQFNSAFSMASMGAHLDIPKGHGPYCYRIHGQVYHLAGPLHPEPGGRPSYGQIYI
CC   LDTAQAIEERLGNPANSKCDPQLMAELTKLISTRNPYAKAYKMMAEVEEKENTDALKEGR
CC   VAEEVRLIFDISTTKDRRCYNVPVSNEVAVVFVGEDQDIPASRSLAIHPRGGGLTAIRDI
CC   DKISVKYLFKYVYKGHDRAALNIIRSRLKEGIVDEIKAHLDARYVCAPEAIHHLFGFKIE
CC   RKSDTDIRTVIDDDGVPVVYPTFVEAAKARGLLKDDSEYLKSLKEWIGCSVPAALRSLFS
CC   SILLFNEVHEPQVLWDTVKRDLSEDYRHAGARDDEAEALAYFDISSRLHRGGKAFNDYVP
CC   EPSMHPTDIYLNTSDPSQCAAEGVRLFQTLNSDQKYVFERIVGALHDPTLPRLFFLDGPG
CC   GSGKTYLYIALYNMIIGENKMAACTAWTGIAAHLLPGGRTMVSLLKLNIHDRCESSLHRR
CC   QLKDARELANTDVFICDEASMIPKTALNTFDSLLRDITQVDQPFGGKIVILGGDFRQILP
CC   IVEKGSRADQVDACIKSSPLWNQFETLRLHSNMRVTTNDTEWMNFLLGVGDGSLNDSESK
CC   VQIPFSLCDGNIVEKVFGDVIDPSTSDPCENVILTPKNVDVTLLNEDVHSRGIGEERIYL
CC   SRDEIVTDDPADHMHYPTEFLNKMTPSTLPPHVLKLKKGSVVMLLRNLDVSGGLCNGSRF
CC   VVESLGRRTIGCRFACGERKGKFVIIPRIECYHDKNLSFKLKRTQFPVRAPDGRITNIVF
CC   TEIL.
XX
SQ   Sequence 5516 BP; 1654 A; 939 C; 1195 G; 1728 T; 0 other;
     atcatttact atatataaag cgcgtgtcct tccgtccgtt tgtagtttgt agtttgatct        60
     ttgatctttc aactctcttt tctgtagttg gaaaaggtat tgggttaaga gttgccgggg       120
     gataatgtca aggtactgta gtagtactgt aggagtactg taggtatacg gtagggttac       180
     tgtagattag gaaaaattga gtttttgtct acagaagagg tattgggttg ggagttggtg       240
     agggataatg tcaaggtact gtagtagtac tgtaggagta ctgtaggtat acggtagggt       300
     tactgtagtt taggaaaagt tgagttttcg tctacagaag aggtattggg ttgggagttg       360
     gtgagggata atttcaaggt actgtagtgg tactgtagga gtactgtagg tatacggtag       420
     ggttactgta gttaggaaaa gttgagtttt cgtctacaga agaggtattg ggttgggagt       480
     tggtgaggga taatttcaag gtactgtagt ggtactgtag gagtactgta ggtatacggt       540
     agggttactg tagttaggaa aaatttgaat tttaaccatt tgaagagata ttgggttggg       600
     agttggtgga ggataatgtc aaggtactgt aatggtattg ttggagtact gtaggagtac       660
     ggtagggtta ctgtagttat gaaaaatgtg aattttaacc atttgaagag atattgggtt       720
     gggagttggt ggaggataat gtcaaggtac tgtaatggta ttgttggagt actgtaggag       780
     tacggtaggg ttactgtagt tatgaaaaat gtgaatttta accatttgaa gagatattgg       840
     gttgggagtt ggtggaggat aatgtcaaag tactgtaatg gtactgtagg agtactgtag       900
     gattatggta gggttactgt agtcaggaaa aaatttgaat tttaactcaa gaagggtccc       960
     attggccccg cccccttggt tttaaatttt tttgaaaaca ttttggtggg aattcaaatt      1020
     tcacttttat aaaaacattt tgacgggaat tcaaatttta attttttgaa aacattttgg      1080
     cggtaattca aattttaatt ctttgaaaac attttggagg aaaattgatg gaaattttct      1140
     taacttctaa aagttaagaa attgtttaaa gttgagaaac gtctgaaacc ttctgaaatc      1200
     cactgaatgc aatgtcctag aaaattttgt taagttcatg agacttcaaa ttaaaaaaaa      1260
     attcgaacga caaaatgcct cattgggtgg agtaattttg tcgactccag cctctctctg      1320
     cagcatttca ggatgttcta tatttatttt agtaaattag attgttttgt tgaccggaat      1380
     gtcaaaaact tttctaaata cataatttga ctgtattttt ttaacacact ctacgaaatt      1440
     tataatttgt ttttctgttt tcgttattta ctgtacatta attacgaaat tcaagatttg      1500
     tttttatgtt tttgttgttt actgtattag tgaactgttg tttacagtag tgtttacagt      1560
     attttttgtt tactgtacat taattacaaa atttaaaatt tgtttctctg ttttaggttg      1620
     tgttttttga aaaaaaatgg tattatactt ttttgccgaa ctacagtttt caattatcta      1680
     tagtacgatt ttggttatta caaaaaaaaa tcttcccctg ttttatctgt tctatcgaaa      1740
     aaaaatttct tttctcttca ttttttcgtt tttttttaaa ttattgtttg tgatagtcaa      1800
     tattttacag aggaatccga agaattatta actatgaacg aattctcaca aaaaactgat      1860
     ttcccttcaa catctgattc ccaagagcct gtttcaaaaa ggacacgttc tagatttaaa      1920
     aggtaagttt ttattttcta agtttatttg ttagtaaaat aaatgttttt agtgatagtt      1980
     ctggagctga acgcaaaagg aaacagcgtg gaaaagagtc atcagaagaa agagaagcac      2040
     gccatcaata cgatcaggat aggaaacgta aaaaaaaagc ttctgagtcc aaagacgaac      2100
     tgaaagtgtt gctactgaaa gatagagaac gtaaagcaag agaaagaaga gaagcaaaag      2160
     gtatatccga tggacccaac tatcttggcc cgatgagcaa gacatgtgat cactgtaaag      2220
     ccgtcttttt cgaaagtaag tttttaaata atatttttac aaatgaacgt tgaattttac      2280
     catgcagcaa atttaatttc agatgaagta agcggctcca ctgatcatat caacatgtgt      2340
     tgcaattttg gactgacaac ctccatcgat gataagttcg ccgactatcc cgatcgattg      2400
     aaggatcttc ttctcggaga ttcgattgag gcaaaaactt ccaatcaaat attcggcaat      2460
     tcaactctgc tttttccatg gcttcaatgg gtgcccatct cgatattcca aaaggacatg      2520
     gtccatattg ctaccgcatc cacggccaag tgtatcactt agcagggcct cttcatccag      2580
     aacctggagg aagaccatca tacggccaaa tttatattct ggacacagct caagctatcg      2640
     aagaaagatt aggaaatcct gcaaattcaa aatgtgatcc gcagttgatg gcagagctca      2700
     cgaaactcat ttcgactagg aacccatacg ctaaagctta taaaatgatg gcagaggtgg      2760
     aagagaaaga aaacaccgat gctctgaaag aaggaagagt tgccgaggag gttcgactaa      2820
     tcttcgacat ttcaactact aaagatcgtc gttgttacaa tgtccccgta tcaaatgaag      2880
     tggcagttgt atttgtcgga gaagatcagg atattccagc ttcaagatct ctagctattc      2940
     atccaagagg aggaggtctc actgcaattc gtgatattga taagatatgt gatccattga      3000
     catatccata aggtcataag atggataaca gattcatcgt tccgtataac tcttactttc      3060
     tgcttcggta caatgctcac atcaacgtcg aaatttgtgc tttcattgaa gctgtgaagt      3120
     acttatttaa gtacgtgtac aagggacatg atcgtgctgc tctaaacatc attcggagta      3180
     gactgaaaga aggaatcgtt gatgagatta aagcccacct tgatgctcga tacgtgtgtg      3240
     ctccggaggc catccaccat ctcttcggat ttaagattga gagaaagtct gacacggtat      3300
     atcgactagc tgtccatctt ccgggttttc aagttgtggt atttccttca aatgtaacaa      3360
     aggatcagtt gcagtctacg cctgaaaaag atacaactct gacagcttgg ttcaaaatta      3420
     acaaaattag cgaagaaaca gtgcagagtg gttccatgtc cgattcattt gtcgacgaat      3480
     tgcattacat tgacatgcca tcttaattca cattcgatca aaaagagcgc tgctggaaaa      3540
     cccgaaagcg tggaatccga caaattggca gaatgtacac agttgctccc agtgaaactg      3600
     aacgttatgt tcttcgcatt cttctactaa acacaaaagg agctacttct tttgaggata      3660
     ttcgaactgt catagatgat gatggagtgc ctgtagttta ccccactttc gttgaagcag      3720
     ctaaggcacg tggactgctg aaggatgata gtgaatattt aaaatcgctg aaagagtgga      3780
     ttggatgctc ggttcctgct gccctacgat ctttgttcag ttctattcta ctcttcaatg      3840
     aggttcacga gcctcaggta ttgtgggata ccgtaaaacg cgatctcagt gaggattatc      3900
     gtcacgcagg agccagagat gatgaagctg aagctttggc ctattttgat atttccagtc      3960
     gacttcacag gtagctatca tctctaaact tatatttata gtggaaatat atgttttcag      4020
     aggaggcaaa gctttcaatg attacgttcc tgagccttca atgcatccga ctgacatcta      4080
     tctaaataca agcgatccat cccaatgtgc agcagagggc gttcgactat ttcaaaccct      4140
     caactcggac cagaaatacg tcttcgagcg tatcgtggga gcgctacacg accctacttt      4200
     accccgtctc ttctttttgg atggtcccgg aggaagtggt aaaacatatc tgtacattgc      4260
     attgtacaat atgataattg gagaaaataa aatggtaact atcaactaat tcatttttat      4320
     tcctaacatg tttttattcc aggcggcttg cacagcatgg actggaatcg cggcacattt      4380
     acttccagga ggtcgaacta tggtgtctct tctcaaattg aacattcatg atcgatgtga      4440
     gtcgtcgctt caccgaaggc aattgaaaga tgccagagaa cttgctaata ccgatgtgtt      4500
     catttgtgac gaggcttcga tgattccaaa aacagctctc aacacgtttg attctcttct      4560
     tcgggatatc actcaagtcg atcaaccatt tggaggaaaa atagtcattt tgggcggaga      4620
     tttccgacaa atccttccca ttgtcgaaaa agggtcgaga gctgatcaag tcgatgcctg      4680
     tatcaagagt tcgcctctgt ggaatcagtt tgagactcta cgcctccact caaacatgag      4740
     agttaccaca aacgacacgg aatggatgaa ctttcttctc ggtgttggcg atggttccct      4800
     aaatgattct gaatcgaaag ttcaaatccc tttttcttta tgtgatggaa atattgtcga      4860
     gaaagttttt ggagatgtaa tcgacccatc aacttctgat ccctgcgaaa atgtgattct      4920
     tactccaaaa aacgttgatg tcacccttct caacgaagat gttcattcca gagggatagg      4980
     agaagaaaga atctatttat caagagatga aattgtaaca gatgatccag cagatcacat      5040
     gcactaccca acagaatttc tgaacaagat gaccccttcg actctccccc cacatgtgct      5100
     gaaactgaaa aagggatcgg tggttatgct gctcagaaac cttgatgtat cgggaggtct      5160
     ctgcaatgga tctcgctttg tggtggaatc cttaggacga cgaacaattg gatgccgatt      5220
     tgcatgtggc gaaagaaaag gaaaatttgt aatcatccct cgaatcgaat gttatcatga      5280
     taagaatttg tctttcaaac tgaaacgaac tcaattccct gttcgagccc ctgacggccg      5340
     aatcacaaat attgttttta ccgaaattct ttaaacgaat gttttagaaa ccttgatttg      5400
     atttaataaa aattatttaa aaaaaatttt tttcaaaatt tttcacttcc ttatttttaa      5460
     aataaaattt caaacgacca gtcgcggccg cgccggaggc gcggtcagcg gctggt          5516
//
ID   HAT2_CE     repbase; DNA   ; CEL   ; 564 BP.
XX
AC   .
XX
DT   21-OCT-1999 (Rel. 4, Created)
DT   21-OCT-1999 (Rel. 4, Last updated, Version 1)
XX
DE   HAT2_CE nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HAT superfamily; TIRs; HAT2_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-564
RA   Kapitonov V.V., Jurka J.;
RT   "HAT2_CE.";
RL   Direct Submission to Repbase Update (OCT-1999).
XX
CC   [1] (Consensus)
XX
CC   HAT2_CE is a putative non-autonomous DNA transposon.
CC   It generates duplication of 8 bp-long target site upon
CC   integration in the genome. HAT2_CE has 17 bp-long
CC   perfect terminal inverted repeats.
CC   The length of the target site duplications indicates
CC   that transposase encoded by the autonomous HAT2_CE-like
CC   element is related to the HAT superfamily. HAT2_CE is about
CC   64% identical to the HAT1_CE consensus sequence and they
CC   share identical 13 bp-long termini.
CC   HAT2_CE individual copies are, on average, 98% identical
CC   to the consensus sequence.
CC   There are about 100 copies of HAT2_CE per haploid genome.
XX
SQ   Sequence 564 BP; 165 A; 113 C; 119 G; 167 T; 0 other;
     caggggtgtg cggataaccg attttttcgg ctaacggata aatcggctaa tgccgatttt        60
     ttgagaaccg gctaacggct aattcggcta acggctaatt tcaaaatttt cggctaacgg       120
     ctaattcggc taatctcagt cattcaaatc ggctaatttt cggctaattc ggctaattcg       180
     gaaaatattc atttggttaa gctttttttg tccattctgt taattcaggt tttgggttaa       240
     ttttttcact gttattgagc aaattcaggg atgaacgact gttcaaatag gaaaaaatca       300
     tacaaattca ccacattttg ttttccaaaa aaatatgtta gttgaattag ccgaaatagc       360
     cgatcggcga attcggctaa catcggccaa aatcggctaa cggataacta cgtattagcc       420
     gaactgccaa aaagtcggct aacggctaat tcggctaatc ggtaaaaagg tcggctaacg       480
     gataattcgg ctaatattag ccgagttagc cgaattagcc gatcggcgaa ttcggctaaa       540
     tcggctatta tccgcacacc cctg                                              564
//
ID   CERP1A      repbase; DNA   ; CEL   ; 454 BP.
XX
AC   M37219;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Nematode CeRep1.1 repeat DNA.
XX
KW   CeRep1 repetitive sequence; CERP1A.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-454
RA   Felsenstein M.K., Emmons W.S.;
RT   "Structure and evolution of a family of interspersed repetitive
RT   DNA sequences in Caenorhabditis elegans.";
RL   J. Mol. Evol 25, 230-240 (1987).
XX
DR   GenBank; M37219; Positions    1412     959.
XX
SQ   Sequence 454 BP; 142 A; 93 C; 79 G; 140 T; 0 other;
     cttccgattt taatccatta taacaaaatg ctgtttctca ggtggcgaaa aattttaatt        60
     ccgagggggt cattttcata ggggattttt tcgtaggaaa acgctttcgg tgggacaaaa       120
     tatacgacac gccttttcac agacccacca catgatcctt cacaatgcac cacacgactt       180
     tttgcaatac accgcacgct tcttcgtatt tatttattcc tttttccaac gtaccgaact       240
     tcgacacgaa ttcaatacaa aacgggtttt taatggaaat taattagttt tattcccgag       300
     ctaaatacgg atattttcag aattttccga tgacaaaaac gggtttttca atagattcga       360
     acgatccaaa atttaattat taacgaaaat gagcgttttc tttccggaaa aagaagaact       420
     gatgccgaga gtgatccaag tggagccaaa tgtc                                   454
//
ID   RTE1        repbase; DNA   ; CEL   ; 3291 BP.
XX
AC   AF054983;
XX
DT   04-FEB-1999 (Rel. 4.01, Created)
DT   04-FEB-1999 (Rel. 4.01, Last updated, Version 1)
XX
DE   RTE-1 is a non-LTR retrotransposon, complete sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Interspersed Repeat; LINE; SHINE;
KW   retrotransposons; RTE1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3291
RA   Youngman S., van Luenen G.H., Plasterk H.R.;
RT   "Rte-1, a retrotransposon-like element in Caenorhabditis
RT   elegans.";
RL   FEBS Lett 380(1-2), 1-7 (1996).
XX
RN   [2]
RP   1-3291
RA   Malik S.H., Eickbush H.T.;
RT   "The RTE class of non-LTR retrotransposons is widely distributed
RT   in animals and is the origin of many SINEs.";
RL   Mol. Biol. Evol 15(9), 1123-1134 (1998).
XX
RN   [3]
RP   1-3291
RA   Malik S.H., Eickbush H.T.;
RT   "RTE1.";
RL   Direct Submission to Genbank (21-MAR-1998)Biology, University of
RL   Rochester, Huchison Hall 334, Rochester, NY 14627, USA.
XX
DR   GenBank; AF054983; Positions       1    3291.
XX
CC   CDS join(65..193,187..3258)
CC   /note="apurinic-apyrimidic endonuclease; ORF2
CC   (translational frameshift from ORF1); similar to second
CC   ORF of many other non-LTR retrotransposons"
CC   CDS 65..196
CC   /note="putative ORF1"
CC   RTE1 has a direct terminal 200 bp-long direct repeat [1].
CC   Southern blots indicate that there are approximately 10-15
CC   additional Rte-1 elements in the C. elegans Bristol N2
CC   genome and a similar number is found in the genomes of
CC   two other geographically distinct strains. The insertion
CC   pattern of Rte-1 is polymorphic between these strains [1].
CC   Database searches and phylogenetic analysis indicate that
CC   representatives of the RTE clade of non-LTR retrotransposons
CC   are found in the bovine and sheep genomes of mammals and in
CC   the silkmoth and mosquito genomes of insects [2]. In addition,
CC   the previously identified SINEs, Art2 and Pst, from ruminate
CC   and viper genomes are shown to be truncated RTE-like
CC   retrotransposable elements. RTE-derived SINE elements are also
CC   found in mollusc and flatworm genomes. Members of the RTE clade
CC   are characterized by unusually short 3'untranslated regions that
CC   are predominantly composed of AT-rich trimer, tetramer, and/or
CC   pentamer repeats [2].
XX
SQ   Sequence 3291 BP; 984 A; 840 C; 732 G; 735 T; 0 other;
     ctctttctgt actaagcctt ttcgtggcga aagggatcaa cagataacca cttcaacaaa        60
     ctcgatgatt tcgtcacatc gagagtggct tggtttggaa ccaagtgcaa attatctggc       120
     caagaagtac accgtctcac gcaggccaga ggtagtgtcg aatactctct gtccgggcgg       180
     ctctagattg gcttagcagg tcattataga gtatctagag acacaacttt tgctctaaac       240
     agcaacccat cctgcctcag tcctccgcat ccggcctctg caaagggaaa gacagttcct       300
     ggagcacgtc ggaagaggcg atctaatctc ggagtccaaa ccatatgtca atcggacttg       360
     gaaattaaga agccgcggga caaaacaaga agaactgact atcgcgtgtg caccttcaac       420
     tgcaggtcct tgtcttcgga tgatcgactt gctgagttgc tagaagagac gaggcgaatc       480
     caattcgacg tcatcggatt gtgtgaaacc aaacgagcag ccgaggcaca cttgatacat       540
     cacgacggta ccggcgtctt cttaggcaaa cggaatgaaa gttctgtatc cggaggggtc       600
     ggcttcatag ttcgaagcac cctccttccc aaaatcgtag aagtacgatt tcttagtcac       660
     cgcatcggct tactcacctt caaagtgagc cgaaaattca actgcacggt gattcaagtc       720
     tatgctccaa ctgcggactc agaccttgag gaaatctgcg acttctacga cagtgttgaa       780
     gacgtcttca gagagtgccg aagcaagtat aaacttgtta tcggcgactt caacgctcga       840
     atgggatgca gacaaaacaa cgaaaggtac attggccccc atgccatgga accaagaaat       900
     gatactggag agcttctcgc aacattttgt gaaaccaacc gtctgtggca cacgaactct       960
     atgttcaaaa agcctatgca caaacggtgg actttcgtca gtcccgacgg gaatcacaga      1020
     cacgaaattg accacattct ggccaatgga aagtttgtca cagataccac tgtactcccc      1080
     tctttcacaa atggtagcga ccataggtta ctccgctgta acctccactt caacaattgt      1140
     ctagcaaagt tggagcaggt cagacggaga aaacctccga aaagagtgtt ggacccggcg      1200
     attgcttatg caatctcagc gacagtcacg gttcagagtg atcctgattt agataccgac      1260
     tatgataatc tgattcagtc actaaaagaa cttcaagacc aagctatcgt tcgaccggcc      1320
     aaccactcat ccaacagact ttcggaggaa acccgaaaac tgctgaacaa aagacgtttt      1380
     atggatagaa atgatcccca attcaaatct atttcagata aatgtcgtga agcagttcag      1440
     aaagaccatg aagcttttgc cagtactcgc cttctatctg ctgcgaacca gaaaaagagt      1500
     ttgaaaagag ttgctaggga catcaacgaa tataagtcag ttatcccatg cctcaaatca      1560
     acctctactg gtgaaagaat cacttccagg gtgaaaatgg agcaggagat tgagaagttc      1620
     tacacggagc tcttcaaaag cgctgtgagc aactctcaaa catcttcaat acccgccacg      1680
     gcaactccac cgccgtttct cccggaagaa attcgtcatg ttctccgttc cttcccgaat      1740
     ggtaaagctg caggccaaga caaaatcagt gcagatttct tgaaatcttg ccacgataac      1800
     gtcattgacc tgataacgga tcgattcaac aggtacctcc acagcagaaa tgtaccgaaa      1860
     ccctggaaaa cctccaaaac cactctcatc ttcaagaaag gtgaccgtga gaatttggaa      1920
     aactataggc ccatctgcct actacccgta ctctacaaag tattcaccaa gtgtttgctg      1980
     aatagaatgc gaagatccct tgatgaggct caacctgtcg agcaggccgg attccgacgg      2040
     tctttctcta cgatcgatca catccactcg ctccaaagac ttcttgaagt cggcagggaa      2100
     taccagatcc cactgacact tgtcttcata gatttcaaga aggcatttga cagtgttgaa      2160
     caccaggcaa tctggaaaag tctcgacgag caaggtgcag atggagccta tattgatcta      2220
     ctgaaagagt gttataaaaa ttgtaccaca aattttaccc cattccacag gccagtcgca      2280
     gtacctgtga ccaaaggagt tcgacaagga gatcccatct ctccgaatct cttctccgct      2340
     tgcctcgaac acgttttccg aaagctttcc tggattgaat tgaaaggaga agctgaggat      2400
     tacgatacga tccctggaat gagagtgaat ggcagaaatc taacgaacct cagatttgct      2460
     gacgatattg tgctcatcgc caatcatccg aatattgcca gcaaaatgct ccaagaactc      2520
     gtacaaaaat gctctgaagt aggtctcgag atcaatactg ggaagacgaa agtcttgcga      2580
     aaccgattcg ctgaccccag taaagtctac ttcggtagcc cttcccccac cacccagctc      2640
     gacgacgtcg acgagtacat ctacctcggt cgtcaaatca acgcccaaaa caacttgatg      2700
     ccggaaatcc accgaagacg tcgagcagcc tgggctgcat tcaatggaat caagaacacc      2760
     accgactcca tcaccgacaa gaagattcgt gcgaatctgt tcgactcaat tgtccttcca      2820
     gcgctcacct acggttcaga agcctggaca ttcaccaaag ctctatccga acgagtacga      2880
     atcacacatg cctccctaga aagacggctt gtgggaatca cactcactca acaacgagaa      2940
     cgagatctcc atcgagaaga cattcgtacg atgtctctag tcagggatcc gctcaatttc      3000
     gtgaaaaaga gaaagctagg atgggctgga cacgttgcga gaaggaaaga cggaagatgg      3060
     accacgttga tgacagaatg gcgcccatat ggatggaaaa ggcctgttgg aaggccgccg      3120
     atgcgatgga ctgattcgct gcgaaaggag atcaccactc gtgacgcaga cggagaagtc      3180
     atcaccccct ggtccactat agccaaggac cgaaaacaat ggcttgctgt gatccgcagg      3240
     aataccacga attcctgaag aacggatcgt ctaagtatct aagtatctaa g               3291
//
ID   CEREP3      repbase; DNA   ; CEL   ; 302 BP.
XX
AC   .
XX
DT   01-DEC-1999 (Rel. 4.11, Created)
DT   01-DEC-1999 (Rel. 4.11, Last updated, Version 1)
XX
DE   CEREP3 dispersed repetitive element - a consensus.
XX
KW   CEREP3; dispersed clusters.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-302
RA   V V., Jurka J.;
RT   "CEREP3.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   This element does not have any noticeable hallmarks of known
CC   retroelements or DNA transposons. There are about 100 copies
CC   of CEREP3 in the C.elegans genome. They are ~73% identical
CC   to the consensus sequence.
CC   There are multiple clusters composed of tandemly repeated
CC   copies of CEREP3 in the genome.
CC   The most conservative portion of the repeat is a 70-bp
CC   5' terminus.
XX
SQ   Sequence 302 BP; 122 A; 41 C; 34 G; 105 T; 0 other;
     tttggccaca gtggggactc gaaccccggt cttgtgattg gtagtcggcg aaaatcccac        60
     tgcgccattt ggacaaaatt tttgaaaatt ctgaaaattg atgaaaatta taaaaaatca       120
     cagttttaag ttaaatttta aatttttata tttaaaaaaa tcaaatttta aactttttta       180
     aaattaaaat tttgaaacta aattttcgac attttctaga aatttttgag tttctaaaac       240
     tttaaaattc gaattctaca tctttaaatt acccaaaaac attaaaaaac caaaaaaaaa       300
     at                                                                      302
//
ID   Tc3         repbase; DNA   ; CEL   ; 2337 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   An active DNA transposon - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Tc3;
KW   mariner/Tc1 superfamily; transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2337
RA   Collins J., Forbes E., Anderson P.;
RT   "The Tc3 family of transposable genetic elements in
RT   Caenorhabditis elegans.";
RL   Genetics 121(1), 47-55 (1989).
XX
RN   [2]
RP   1-2337
RA   Kapitonov V.V., Jurka J.;
RL   Direct Submission to Repbase Update (MAR-2003).
XX
CC   [2] (Consensus)
XX
CC   Tc3 is an active mariner/Tc1-like DNA transposon [1]. There are
CC   17 copies of Tc3 in the sequenced C. elegans genome. They are
CC   ~99.84% identical to the consensus sequence. Tc3 copies are
CC   flanked
CC   by the TA traget site duplications. The preferential target site
CC   is aTAt [2]. Tc3 has 467-bp terminal inverted repeats.
CC   Tc3 encodes a 329-aa Tc3p transposase (2 exons, positions
CC   720-1136 and 1185-1757).
CC   Tc3:
CC   MPRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKA
CC   LSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSGVIVRQKLRPAPLLSAD
CC   HKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDGCRYYWRDLRKEPMVFSRRNFGGGTV
CC   MVWGAFTEKKKLEIQFVSSKMNSTDYQNVLELELSKYLRHYSRKDFRFQQDNATIHVSNS
CC   TRDYFKLKKINLLDWPARSPDLNPIENLWGILVRIVYAQNKTYPTVASLKQGILDAWKSI
CC   PDNQLKSLVRSMEDRLFEIIRTQGNPINY.
XX
SQ   Sequence 2337 BP; 700 A; 445 C; 490 G; 702 T; 0 other;
     cagtgtggga aagttctata ggaccccccc taatttgaag gtttgaggaa cttccgaaaa        60
     ttttttcgaa aaactgctaa tgccgttcgt ttttaaattg aaaaaaacct atatacattt       120
     ttttccagaa gtttatctca aaaactgagg tcgcgctgga aaaaacgtca aaatccagtg       180
     tgaaacttct ataggacccc ccgttttttt tcacgatttt tactaaaatc aacagatttt       240
     ggaatttttg acaaagctca aatcaagttt gagttagaaa tgagttcaga taagcagttt       300
     tgactttaaa aaattaatac gaaatgttct cgtgggatct ccagactggt tctgattctt       360
     ccgatctttg atgttcaagt ctgtttcaag cttcctggtg ctctcggtaa tgccaaaact       420
     tgataaactc tctttaacaa gttcctacta aaattcctag cacgcacttt agatgtttcg       480
     actgtgtagt caagctgatt tggcaaaata tgcagcagga aacaatggaa ggcttatcag       540
     gaatcaaatc gtttttcttt gattacaagg ttccatggga ccaatatttc aagttaaatt       600
     gtccctcaca gatgttattt actatttttt gcgtgaatta ttaaatgtgg aattgtggca       660
     tgtgttgtgg cacacatata gaggctggaa agcttacttc gaaagcagtc taacttgcaa       720
     tgcctcgagg atctgccctt tcggacactg aacgcgctca gctggatgtt atgaaattgc       780
     tcaatgtgtc cctgcatgaa atgagtagga aaatttcccg ttctcgacac tgtattcgcg       840
     tgtatctgaa ggatccggtg agctacggta catctaaaag agctcctcgt cgcaaagctc       900
     tctccgtgcg tgacgaacga aatgtgattc gtgctgcctc caactcctgt aagacggcaa       960
     gagatattcg caatgagctt caattgtctg cttcaaaaag gaccatcctc aatgtcatca      1020
     aacgatctgg tgtaatcgtt cgtcagaaac ttcgccctgc tccgttactc tctgcagacc      1080
     ataaactcaa gcgattggaa tttgctaaga acaatatggg aacgaattgg agtaaagtga      1140
     gaatttaaaa aagcaagagt gaataattag gatcattgtt ttaggttgtc ttctccgatg      1200
     aaaagaaatt caatctcgat gggcctgacg gttgccgcta ctattggcgc gatttgcgca      1260
     aggaaccaat ggttttttcg agacgtaatt ttggaggagg aacggtgatg gtttggggag      1320
     cgttcacgga gaagaagaag cttgagatac agttcgtcag tagcaagatg aacagcactg      1380
     actatcagaa cgtcttggaa ctggagctct ccaaatatct tcgtcactac tccagaaaag      1440
     actttagatt tcagcaggat aatgcgacaa tccatgtgag caactcaacc cgcgactatt      1500
     tcaagctcaa gaagatcaac cttcttgatt ggccagctcg aagtcctgat ctcaatccaa      1560
     tcgaaaattt gtgggggatt cttgtccgta tcgtgtatgc tcagaacaag acttacccaa      1620
     cagttgcatc gttgaagcaa ggaattctcg acgcttggaa gtctattccg gacaaccagc      1680
     tgaaaagttt ggtcagatca atggaggaca gactgtttga gatcatccgc acacaaggaa      1740
     acccgattaa ctattgatcc tttcttgatt ttagtatatg aatgttctgt tgttgatcaa      1800
     aaataactgc aacttgttaa tacgctgttt ctgactggtt tcttggggat ggcgtaaaaa      1860
     tgtttatggt gtgtgtgcta ggaattttag taggaacttg ttaaagagag tttatcaagt      1920
     tttggcatta ccgagagcac caggaagctt gaaacagact tgaacatcaa agatcggaag      1980
     aatcagaacc agtctggaga tcccacgaga acatttcgta ttaatttttt aaagtcaaaa      2040
     ctgcttatct gaactcattt ctaactcaaa cttgatttga gctttgtcaa aaattccaaa      2100
     atctgttgat tttagtaaaa atcgtgaaaa aaaacggggg gtcctataga agtttcacac      2160
     tggattttga cgttttttcc agcgcgacct cagtttttga gataaacttc tggaaaaaaa      2220
     tgtatatagg tttttttcaa tttaaaaacg aatggcatta gcagtttttc aaaaaaattt      2280
     tcggaagttc ctcaaacctt caaattaggg ggggtcctat agaactttcc cacactg         2337
//
ID   HELITRON2_CE repbase; DNA   ; CEL   ; 5514 BP.
XX
AC   AC006730;
XX
DT   25-MAY-2001 (Rel. 6.04, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   HELITRON2_CE is a Helitron DNA transposon.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; HELICOP2;
KW   HELITRON class; HELITRON2_CE; helicase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5514
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON2_CE.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
RN   [2]
RP   1-5514
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
DR   GenBank; AC006730; Positions   23891   18378.
XX
CC   HELITRON2_CE is a HELITRON-like DNA transposon.
CC   904-aa protein which is putatively involved in proliferation
CC   of HELITRON2_CE copies. There are about 100 nonautonomous
CC   elements
CC   in the genome, and they are 96% identical to HELITRON2_CE.
CC   These elements are ~500-1500 bp long. In many cases,
CC   HELITRON2_CE forms 7-9 kb minisatellite-like clusters composed
CC   from a ~200bp portion of HELITRON2_CE.
CC   HELITRON2_CE encodes a 904-aa protein, CEHEL2p, composed of
CC   the rolling-circle initiator and DNA helicase domains.
CC   CEHEL2p is encoded by 7 putative exons.
CC   CDS: 1834-1922, 1973-2235, 2431-2988, 3112-3296, 3657-3970,
CC   4021-4294, 4343-5374.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="CEHEL2p"
FT                 /translation="MNEFSQKTDFPSTSDSQEPVSKRTRSRFKSDSSGAER
FT                 KRKQRGKESSEEREARHQYDQDRKRKKKASESKDELKVLLLKDRERKARER
FT                 REAKGISDGPNYLGPMSKTCDHCKAVFFESKNFQSNIRQFNSAFSMASMGA
FT                 HLDIPKGHGPYCYRIHGQVYHLAGPLHPEPGGRPSYGQIYILDTAQAIEER
FT                 LGNPANSKCDPQLMAELTKLISTRNPYAKAYKMMAEVEEKENTDALKEGRV
FT                 AEEVRLIFDISTTKDRRCYNVPVSNEVAVVFVGEDQDIPASRSLAIHPRGG
FT                 GLTAIRDIDKISVKYLFKYVYKGHDRAALNIIRSRLKEGIVDEIKAHLDAR
FT                 YVCAPEAIHHLFGFKIERKSDTDIRTVIDDDGVPVVYPTFVEAAKARGLLK
FT                 DDSEYLKSLKEWIGCSVPAALRSLFSSILLFNEVHEPQVLWDTVKRDLSED
FT                 YRHAGARDDEAEALAYFDISSRLHRGGKAFNDYVPEPSMHPTDIYLNTSDP
FT                 SQCAAEGVRLFQTLNSDQKYVFERIVGALHDPTLPRLFFLDGPGGSGKTYL
FT                 YIALYNMIIGENKMAACTAWTGIAAHLLPGGRTMVSLLKLNIHDRCESSLH
FT                 RRQLKDARELANTDVFICDEASMIPKTALNTFDSLLRDITQVDQPFGGKIV
FT                 ILGGDFRQILPIVEKGSRADQVDACIKSSPLWNQFETLRLHSNMRVTTNDT
FT                 EWMNFLLGVGDGSLNDSESKVQIPFSLCDGNIVEKVFGDVIDPSTSDPCEN
FT                 VILTPKNVDVTLLNEDVHSRGIGEERIYLSRDEIVTDDPADHMHYPTEFLN
FT                 KMTPSTLPPHVLKLKKGSVVMLLRNLDVSGGLCNGSRFVVESLGRRTIGCR
FT                 FACGERKGKFVIIPRIECYHDKNLSFKLKRTQFPVRAPDGRITNIVFTEIL
FT                 "
XX
SQ   Sequence 5514 BP; 1653 A; 939 C; 1195 G; 1727 T; 0 other;
     tcatttacta tatataaagc gcgtgtcctt ccgtccgttt gtagtttgta gtttgatctt        60
     tgatctttca actctctttt ctgtagttgg aaaaggtatt gggttaagag ttgccggggg       120
     ataatgtcaa ggtactgtag tagtactgta ggagtactgt aggtatacgg tagggttact       180
     gtagattagg aaaaattgag tttttgtcta cagaagaggt attgggttgg gagttggtga       240
     gggataatgt caaggtactg tagtagtact gtaggagtac tgtaggtata cggtagggtt       300
     actgtagttt aggaaaagtt gagttttcgt ctacagaaga ggtattgggt tgggagttgg       360
     tgagggataa tttcaaggta ctgtagtggt actgtaggag tactgtaggt atacggtagg       420
     gttactgtag ttaggaaaag ttgagttttc gtctacagaa gaggtattgg gttgggagtt       480
     ggtgagggat aatttcaagg tactgtagtg gtactgtagg agtactgtag gtatacggta       540
     gggttactgt agttaggaaa aatttgaatt ttaaccattt gaagagatat tgggttggga       600
     gttggtggag gataatgtca aggtactgta atggtattgt tggagtactg taggagtacg       660
     gtagggttac tgtagttatg aaaaatgtga attttaacca tttgaagaga tattgggttg       720
     ggagttggtg gaggataatg tcaaggtact gtaatggtat tgttggagta ctgtaggagt       780
     acggtagggt tactgtagtt atgaaaaatg tgaattttaa ccatttgaag agatattggg       840
     ttgggagttg gtggaggata atgtcaaagt actgtaatgg tactgtagga gtactgtagg       900
     attatggtag ggttactgta gtcaggaaaa aatttgaatt ttaactcaag aagggtccca       960
     ttggccccgc ccccttggtt ttaaattttt ttgaaaacat tttggtggga attcaaattt      1020
     cacttttata aaaacatttt gacgggaatt caaattttaa ttttttgaaa acattttggc      1080
     ggtaattcaa attttaattc tttgaaaaca ttttggagga aaattgatgg aaattttctt      1140
     aacttctaaa agttaagaaa ttgtttaaag ttgagaaacg tctgaaacct tctgaaatcc      1200
     actgaatgca atgtcctaga aaattttgtt aagttcatga gacttcaaat taaaaaaaaa      1260
     ttcgaacgac aaaatgcctc attgggtgga gtaattttgt cgactccagc ctctctctgc      1320
     agcatttcag gatgttctat atttatttta gtaaattaga ttgttttgtt gaccggaatg      1380
     tcaaaaactt ttctaaatac ataatttgac tgtatttttt taacacactc tacgaaattt      1440
     ataatttgtt tttctgtttt cgttatttac tgtacattaa ttacgaaatt caagatttgt      1500
     ttttatgttt ttgttgttta ctgtattagt gaactgttgt ttacagtagt gtttacagta      1560
     ttttttgttt actgtacatt aattacaaaa tttaaaattt gtttctctgt tttaggttgt      1620
     gttttttgaa aaaaaatggt attatacttt tttgccgaac tacagttttc aattatctat      1680
     agtacgattt tggttattac aaaaaaaaat cttcccctgt tttatctgtt ctatcgaaaa      1740
     aaaatttctt ttctcttcat tttttcgttt ttttttaaat tattgtttgt gatagtcaat      1800
     attttacaga ggaatccgaa gaattattaa ctatgaacga attctcacaa aaaactgatt      1860
     tcccttcaac atctgattcc caagagcctg tttcaaaaag gacacgttct agatttaaaa      1920
     ggtaagtttt tattttctaa gtttatttgt tagtaaaata aatgttttta gtgatagttc      1980
     tggagctgaa cgcaaaagga aacagcgtgg aaaagagtca tcagaagaaa gagaagcacg      2040
     ccatcaatac gatcaggata ggaaacgtaa aaaaaaagct tctgagtcca aagacgaact      2100
     gaaagtgttg ctactgaaag atagagaacg taaagcaaga gaaagaagag aagcaaaagg      2160
     tatatccgat ggacccaact atcttggccc gatgagcaag acatgtgatc actgtaaagc      2220
     cgtctttttc gaaagtaagt ttttaaataa tatttttaca aatgaacgtt gaattttacc      2280
     atgcagcaaa tttaatttca gatgaagtaa gcggctccac tgatcatatc aacatgtgtt      2340
     gcaattttgg actgacaacc tccatcgatg ataagttcgc cgactatccc gatcgattga      2400
     aggatcttct tctcggagat tcgattgagg caaaaacttc caatcaaata ttcggcaatt      2460
     caactctgct ttttccatgg cttcaatggg tgcccatctc gatattccaa aaggacatgg      2520
     tccatattgc taccgcatcc acggccaagt gtatcactta gcagggcctc ttcatccaga      2580
     acctggagga agaccatcat acggccaaat ttatattctg gacacagctc aagctatcga      2640
     agaaagatta ggaaatcctg caaattcaaa atgtgatccg cagttgatgg cagagctcac      2700
     gaaactcatt tcgactagga acccatacgc taaagcttat aaaatgatgg cagaggtgga      2760
     agagaaagaa aacaccgatg ctctgaaaga aggaagagtt gccgaggagg ttcgactaat      2820
     cttcgacatt tcaactacta aagatcgtcg ttgttacaat gtccccgtat caaatgaagt      2880
     ggcagttgta tttgtcggag aagatcagga tattccagct tcaagatctc tagctattca      2940
     tccaagagga ggaggtctca ctgcaattcg tgatattgat aagatatgtg atccattgac      3000
     atatccataa ggtcataaga tggataacag attcatcgtt ccgtataact cttactttct      3060
     gcttcggtac aatgctcaca tcaacgtcga aatttgtgct ttcattgaag ctgtgaagta      3120
     cttatttaag tacgtgtaca agggacatga tcgtgctgct ctaaacatca ttcggagtag      3180
     actgaaagaa ggaatcgttg atgagattaa agcccacctt gatgctcgat acgtgtgtgc      3240
     tccggaggcc atccaccatc tcttcggatt taagattgag agaaagtctg acacggtata      3300
     tcgactagct gtccatcttc cgggttttca agttgtggta tttccttcaa atgtaacaaa      3360
     ggatcagttg cagtctacgc ctgaaaaaga tacaactctg acagcttggt tcaaaattaa      3420
     caaaattagc gaagaaacag tgcagagtgg ttccatgtcc gattcatttg tcgacgaatt      3480
     gcattacatt gacatgccat cttaattcac attcgatcaa aaagagcgct gctggaaaac      3540
     ccgaaagcgt ggaatccgac aaattggcag aatgtacaca gttgctccca gtgaaactga      3600
     acgttatgtt cttcgcattc ttctactaaa cacaaaagga gctacttctt ttgaggatat      3660
     tcgaactgtc atagatgatg atggagtgcc tgtagtttac cccactttcg ttgaagcagc      3720
     taaggcacgt ggactgctga aggatgatag tgaatattta aaatcgctga aagagtggat      3780
     tggatgctcg gttcctgctg ccctacgatc tttgttcagt tctattctac tcttcaatga      3840
     ggttcacgag cctcaggtat tgtgggatac cgtaaaacgc gatctcagtg aggattatcg      3900
     tcacgcagga gccagagatg atgaagctga agctttggcc tattttgata tttccagtcg      3960
     acttcacagg tagctatcat ctctaaactt atatttatag tggaaatata tgttttcaga      4020
     ggaggcaaag ctttcaatga ttacgttcct gagccttcaa tgcatccgac tgacatctat      4080
     ctaaatacaa gcgatccatc ccaatgtgca gcagagggcg ttcgactatt tcaaaccctc      4140
     aactcggacc agaaatacgt cttcgagcgt atcgtgggag cgctacacga ccctacttta      4200
     ccccgtctct tctttttgga tggtcccgga ggaagtggta aaacatatct gtacattgca      4260
     ttgtacaata tgataattgg agaaaataaa atggtaacta tcaactaatt catttttatt      4320
     cctaacatgt ttttattcca ggcggcttgc acagcatgga ctggaatcgc ggcacattta      4380
     cttccaggag gtcgaactat ggtgtctctt ctcaaattga acattcatga tcgatgtgag      4440
     tcgtcgcttc accgaaggca attgaaagat gccagagaac ttgctaatac cgatgtgttc      4500
     atttgtgacg aggcttcgat gattccaaaa acagctctca acacgtttga ttctcttctt      4560
     cgggatatca ctcaagtcga tcaaccattt ggaggaaaaa tagtcatttt gggcggagat      4620
     ttccgacaaa tccttcccat tgtcgaaaaa gggtcgagag ctgatcaagt cgatgcctgt      4680
     atcaagagtt cgcctctgtg gaatcagttt gagactctac gcctccactc aaacatgaga      4740
     gttaccacaa acgacacgga atggatgaac tttcttctcg gtgttggcga tggttcccta      4800
     aatgattctg aatcgaaagt tcaaatccct ttttctttat gtgatggaaa tattgtcgag      4860
     aaagtttttg gagatgtaat cgacccatca acttctgatc cctgcgaaaa tgtgattctt      4920
     actccaaaaa acgttgatgt cacccttctc aacgaagatg ttcattccag agggatagga      4980
     gaagaaagaa tctatttatc aagagatgaa attgtaacag atgatccagc agatcacatg      5040
     cactacccaa cagaatttct gaacaagatg accccttcga ctctcccccc acatgtgctg      5100
     aaactgaaaa agggatcggt ggttatgctg ctcagaaacc ttgatgtatc gggaggtctc      5160
     tgcaatggat ctcgctttgt ggtggaatcc ttaggacgac gaacaattgg atgccgattt      5220
     gcatgtggcg aaagaaaagg aaaatttgta atcatccctc gaatcgaatg ttatcatgat      5280
     aagaatttgt ctttcaaact gaaacgaact caattccctg ttcgagcccc tgacggccga      5340
     atcacaaata ttgtttttac cgaaattctt taaacgaatg ttttagaaac cttgatttga      5400
     tttaataaaa attatttaaa aaaaattttt ttcaaaattt ttcacttcct tatttttaaa      5460
     ataaaatttc aaacgaccag tcgcggccgc gccggaggcg cggtcagcgg ctgg            5514
//
ID   RCC9        repbase; DNA   ; CEL   ; 366 BP.
XX
AC   X61257;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   C.elegans RcC9 repetitive DNA.
XX
KW   Repetitive DNA; RCC9.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-366
RA   La Volpe A.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (16-AUG-1991)A. La Volpe, CNR
RL   International Institute of Genetics and Biophysic, Via Marconi
RL   10, 80125 Naples, ITALY.
XX
RN   [2]
RP   1-366
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence
RT   in Caenorhabditis elegans.";
RL   Unpublished.
XX
RN   [3]
RP   1-366
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226, 159-168 (1992).
XX
DR   GenBank; X61257; Positions       1     366.
XX
SQ   Sequence 366 BP; 100 A; 72 C; 64 G; 130 T; 0 other;
     gtaaatctct gtgattcaag ttttccgcat tcagtgtcca atggagcgcg ggtcgagcca        60
     gaacctcgtg tagaactttg cagaagtttc ttgaattttc cacgaaattg aacatttcag       120
     aattttatcg aattttttag agagttctgg aacattgcag acttttcccg atttttctag       180
     aaagttctgg aatattccag aattttcccg aattttctag aaaattctgg accattccag       240
     aactttctcg gattttctag aaaattctgg accattccgg aattttctcg aattttctag       300
     aaacttctgg accattccag aactttctag aattttctag aaaattctgg accattccgg       360
     aatttt                                                                  366
//
ID   TIR23T5B_CE repbase; DNA   ; CEL   ; 1658 BP.
XX
AC   .
XX
DT   14-SEP-1999 (Rel. 3.8, Created)
DT   14-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   TIR23T5B_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   Non-autonomous DNA transposon; TIR23T5B_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1658
RA   V V., Jurka J.;
RT   "TIR23T5B_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   TIR23T5B_CE is flanked by 23 bp-long terminal inverted repeat.
CC   There are about ~25 copies of TIR21T5B_CE in the genome; they are
CC   ~98% identical to the consensus sequence.
CC   TIR23T5B_CE generates 5 bp long duplication of target-sites upon
CC   its integration in the genome.
XX
SQ   Sequence 1658 BP; 569 A; 266 C; 276 G; 546 T; 1 other;
     cacagcgcct caaatcggga gagttaagaa aatcgagaat tggaaagtcc aacggagcgc        60
     gcttgcacac ttttacggta ttaaatgagt ttcagacgaa atttcgcgat tattcgagtt       120
     ttcaagatga aatttggaaa aaataattaa atattgggat tattattgct ttaaaaaagt       180
     tttaaaaaac attttattga acaaattcaa gatttggctg ctttttcatt gattttcgaa       240
     ccgactagaa caagttaact ctatgacaaa atttctacgc gaaacaaatt ttttcaagca       300
     ttaatatgtt tgattccaat ttttaaacgt cagcttgata gaaataacac ggtttcacgt       360
     cttgaaattg ttcaaaaatg cccacatcaa cggaaactgt ttagttggca gctgatcttc       420
     actaaaccaa cactaaatgt tcagatcaaa tcacaacttg tttgatcatt tgaaaaaaca       480
     tttttgaatc attgtttccc acaaaaagca gatgataagt agtatagcat gatgagaatc       540
     catatgattc ttcatatgcg catagctata gatactgtat cttcgacaac tcctatctcc       600
     tcagagakgc aagatatcaa aaagtgatta actaagaaat tgtagaacat atcaaaaact       660
     atactaatta attaaaatca tgtgtttatc tcttaagatg agggagttag agcagccagt       720
     agaataacaa aaagtatgca atacaaatgt acgtctaact cccccatctt gaaagataaa       780
     aacgtaggtt aaattgaata tcatagtttt tgatgtgctc tacaagttct cagttgatca       840
     ctttttggta tctcacctct ccgagtagat aggagttgtc gaagttgagg tatctagagc       900
     cgtagagggt aggaagaacc tgatggttcc ttattaagga aaagaaaata taacacgaaa       960
     cttgtaaaaa atgttaattt gatcatttat gtgagtattt gagccatttt ttaaggaaaa      1020
     ttggagagca acacttacat aagaaatttg gcgtggcata gatccattgg tagattggaa      1080
     cattgaaatt tgatcagaac tatttgtatt tttagtgatt ttgattgatt tgtagcttta      1140
     ttctagtgaa atctttgatt tcataaaagt tttttaacca attttgcaag atttcccttg      1200
     ataaatgttg ctttactttt ttatcgattt cgttgtaaag aaaaatcatt tttctgtgtt      1260
     atcagtcaaa ttaatgacta aaactcttta aaaagattca aactattagt aaaaattcta      1320
     aaattgaata tttatgcaat aaattgctct aaaatcaatt tttatttgca aaattctgtt      1380
     tttggtcaaa aaaaattttc agattcgccg aaattcagag ctcatttcga gcttatttgg      1440
     ggaaaaattt atattaaaat gaagtaaatc gcatcgcgaa cagtctctgg gcggtcccgc      1500
     atgttgaaaa ttgctttaaa atccctaaaa tccagcaaaa acgcgatatt ttactgtttt      1560
     gctacacatt aattccaatt cgtgcgacgt ctgcagcaaa cgcgctcccg cgccaaaacc      1620
     acttctttag ctcttctctc ccgatctgag gcgctgtg                              1658
//
ID   NDNAX1_CE   repbase; DNA   ; CEL   ; 2087 BP.
XX
AC   .
XX
DT   12-NOV-1999 (Rel. 4, Created)
DT   12-NOV-1999 (Rel. 4, Last updated, Version 1)
XX
DE   NDNAX1_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   nonautonomous DNA transposon; DNAX family; NDNAX1_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2087
RA   Kapitonov V.V., Jurka J.;
RT   "NDNAX1_CE.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   NDNAX1_CE is a putative non-autonomous DNA transposon;
CC   its copies are 98% identical to the consensus sequence.
CC   It shares common termini with NDNAX2_CE element.
CC   These elements do not have terminal inverted repeats;
CC   It is possible that NDNAX elements share a common
CC   mechanism of their transposition with the ATREP1-ATREP10
CC   elements found in the A.thaliana genome.
XX
SQ   Sequence 2087 BP; 600 A; 402 C; 376 G; 706 T; 3 other;
     tctgccttct tcctatgtta aatatggaat gtgcaagggt cgtcactttt tgcgcacaaa        60
     gtgtcacaaa aaattaaaaa agttgggtgt gcactttcgt gtctaacttt gctgtacctg       120
     cacatttttc aattttcttt tttgtaggaa atagagaatc gctttttcta tcttyctatc       180
     taaatggtta tttgatttga ttttatcttt taagagaaat tcttgatgaa acacgaaaaa       240
     atcacttttt tcgcgtgtcg tgtcgctttt tttgcacacg tttagaggtc atagtataaa       300
     atgtttttga taaggtaact gtatatctgg gattgttaaa aatttttagt ttttgcaatt       360
     tcatcaattt tgaactgagt tatgatgatt tgaaaatcgg actcgaaaaa tcccggaatt       420
     tcgaaaattg cgttgaaaac atgtttaacg ttcgtatttt tgttttattt tacattatca       480
     aatgtaaatt ttaacgtaga ttccgttttt ctaaatagtt ttctcattat ccaaccggaa       540
     agttacgaaa aaagcataaa ttgacgattt ttcaatgaaa ttgtgcgcat tcccccttgt       600
     gtttttggtg tgcaaattag tgatttttga gattctttcg cctataagtc ggtcagtttg       660
     gcactttttg gggtaaattt ttcgaaaaac gtatttttca ggaaatttac tcttcaaaaa       720
     tataattttt tttacaaaaa agtcaaaaat aacttcagaa atcgcaaatt tcatgatttt       780
     ctcaaaawaa tgacgttttt gctggaaaaa taaaaaattt tccactaccg aatgggattt       840
     tatgttaaat tcgtaattag tacataaata ccgaatgcaa gctgaaagca cagctctcta       900
     cgatcatttt caacgatttt agtttattta atttttgacc tcgaaatttc aatttccctc       960
     ttttcctgga ccagtttttc actgaaatgt gaatgttatg tcctaaatct tattattttt      1020
     gctatgagaa gcgagacaaa ccaaaaaatt ttagtcttga gttcctcgag ccgcgttcct      1080
     gaagttgtgg gcttcaagcc ttgctcagga agctcaaaag ttcattcttg accaattttt      1140
     aaattttcaa atgctataat attctacttt taacgctgat ttcaaatata tacttttctt      1200
     tttccaattc ctattatgag ctgagttacg gcgctttcaa gtttcagcaa tgcccgcccg      1260
     cccccctctt tcctcccctt tctcttgcct cctccctctc atgcataggg tggctgtaat      1320
     atggtctcta attactgtta caggatcaga tatgtatatt ttacgacata tctcttaata      1380
     gaagaacaat agacatcgcc acatttgttt ttgtaagagg tccccaatgg gctgtaaaac      1440
     agtctatcca cctttcttcc tgcaagaaag gaggtaatgt atttgagact gttcatttat      1500
     tgtaattgag gggttgaaaa ttattatttt aattttcaaa taaaaataca ttaaaatttt      1560
     tttttaattt taaaataaaa aaatcctttt taattttaaa ataaaacatt ttttaatttt      1620
     gaggtctgct ttcttcgcgg ggacagagcg ccgtaggcgc tcttaatcta aattataggc      1680
     agagcaggcc gaaggcctgc tatgccagta ggctttcact gccgggtcag agcgccgcag      1740
     gcgctctgaa tctaaattac aggcagagca ggccgtaggc ctgctatgcc agcctgcttt      1800
     tactgccggg tcagagcgcc gcaggcgctc taaatctaaa ttgtgtactg cagggagaca      1860
     ataaatattt ttaaaacagt aaaaacaaac acacaggttc gaggcgaagc cgagaacctg      1920
     cgccagctac ctaatctggt agaggaagca acgcaggccg caggcctgcg gtgcgagacc      1980
     maaaacattg ccaatcgcac gttcgaggcg aagccgagaa cccgcgccag ctagcggact      2040
     cgccccaacc ccacctctac tagcgggccc catagggccc gctagtc                    2087
//
ID   CELE14B     repbase; DNA   ; CEL   ; 187 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE14B nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; CELE14;
KW   CELE14B; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-187
RA   V V., Jurka J.;
RT   "CELE14B.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   CELE14B is a second major subfamily of CELE14 repeats.
CC   CELE14B and CELE14A are 89% identical to each other.
CC   CELE14B is flanked by 30 bp-long imperfect terminal inverted
CC   repeats and 6 bp-long duplications of non-specific target sites.
CC   CELE14B copies are ~91% identical to the consensus sequence.
XX
SQ   Sequence 187 BP; 50 A; 46 C; 38 G; 53 T; 0 other;
     cacgtggtgc caggctgtcc cattacggtt tgatctacaa aaaatgcggg aatttttttc        60
     ccaaaaaatt gtgacgtcag cacgttctta accatgcgaa atcagttgag aactctgcgt       120
     ctcttctccc gcattttttg tagatctacg tagatcaagc cgaaatgaga cactctgaca       180
     ccacgtg                                                                 187
//
ID   PAL5A_CE    repbase; DNA   ; CEL   ; 792 BP.
XX
AC   .
XX
DT   31-AUG-1999 (Rel. 3.7, Created)
DT   31-AUG-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   PAL5A_CE non-autonomous DNA transposon - a consensus.
XX
KW   TIR; Non-autonomous DNA transposon; palindrome; IR-2; PAL5A_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-792
RA   Devine E.S., Chissoe L.S., Eby Y., Wilson K.R., Boeke D.J.;
RT   "PAL5A_CE.";
RL   Direct Submission to Genbank (MAR-1997).
XX
RN   [2]
RP   1-792
RA   Kapitonov V.V., Jurka J.;
RT   "PAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [2] (Consensus)
XX
CC   PAL5A_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect 396 bp-long palindrome and generates
CC   duplication of 5 bp-long target site upon its integration
CC   in the genome.
CC   PAL5A_CE can be still mobile since some of its individual
CC   copies are more than 98% identical with the consensus
CC   sequence.
XX
SQ   Sequence 792 BP; 249 A; 146 C; 149 G; 247 T; 1 other;
     cactgcaact ttttcctcac gagggacgag gaaaagtggt ttctaggcca tggccgaggg        60
     gccgacaagt ttcagcggcc atttatcttg ctttgttttc cgcctgtttt ctttcgtttt       120
     tcaccgattt ttcccgtttt ttcttattaa aactgataaa taaatatttt ttgcagatgc       180
     taaaacaatt tccaagtaaa aaaattatgt attcagtggg caagcagcgg tgaaagtggg       240
     caatgtaata tgatggatta cgggaataca aaacctaaac tttttctgaa acatgataca       300
     tatgctgctt agatgctgaa actacctgat tttcataacg agaccgctga aaaagttttg       360
     aggttttcaa aattcaactt ttttggtgaa aaagtcgaga ttttcgcaca aaaagttgaa       420
     ttttgaaaac ctcaaaactt tttcagcggt ctcgttatga aaatcaggta gtttcagcat       480
     ctaagcagca tatgtatcat gtttcagaaa aagtttaggt tttgtattcc cgtaatccat       540
     catattacat tgaccacttt caccgctgct tgcccactga atacataatt tttttacttg       600
     gaaattgttt tagcatctgc aaaaaatatt tatttatcag ttttaataag aaaaaacggg       660
     aaaaakctgt gaaaaacgaa agaaaacagg cggaaaacaa agcaagataa atggccgctg       720
     aaacttgtcg gcccctcggc catggcctag aaaccacttt tcctcgtccc tcgtgaggaa       780
     aaagttgcag tg                                                           792
//
ID   HELICOPY3   repbase; DNA   ; CEL   ; 195 BP.
XX
AC   .
XX
DT   09-AUG-2000 (Rel. 4.1, Created)
DT   09-AUG-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOPY3 is a nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HELICOP superfamily; HELICOPY3.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-195
RA   V V., Jurka J.;
RT   "HELICOPY3.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   There are about 50-100 copies of HELICOPY3 in the C.elegans
CC   genome.
CC   They are ~99% identical to the consensus sequence.
CC   This family is a nonautonomous HELICOP-like DNA transposon.
CC   Several copies are identical, therefore, it is likely that
CC   HELICOP-like transposons are curently active in the C.elegans
CC   genome. HELICOPY3 and HELICOPY2 share identical 22-bp 5'-
CC   and 38-bp (one mismatch) 3'-termini. Their internal portions
CC   are different.
CC   A 49-bp 5'-termini of the autonomous HELICOP2 transposons is
CC   94% identical to the HELICOPY3 5'-termini. These transposons
CC   share 84% identical 38-bp 3'-termini.
XX
SQ   Sequence 195 BP; 49 A; 44 C; 48 G; 54 T; 0 other;
     atcatttact atatataaag cgcgtgtcct tctgtcccta tgtagtttga tctctgatca        60
     gagcaacgaa attttgggaa accttatgct aaatgcgcag cagacatcga tcgaggtccg       120
     cgatagacac cgtatatcta atgtgttttc tcaaaaaagt cgggggccgc gccgtaggtg       180
     cggtccacgg ctggt                                                        195
//
ID   NDNAX3_CE   repbase; DNA   ; CEL   ; 1593 BP.
XX
AC   .
XX
DT   06-APR-1999 (Rel. 4, Created)
DT   06-APR-1999 (Rel. 4, Last updated, Version 1)
XX
DE   NDNAX3_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   nonautonomous DNA transposon; DNAX family; NDNAX3_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1593
RA   Kapitonov V.V., Jurka J.;
RT   "NDNAX3_CE.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
CC   [1] (Consensus)
XX
CC   NDNAX3_CE is a putative non-autonomous DNA transposon.
CC   There are about 100 copies of NDNAX3_CE in the genome;
CC   they are ~95% identical to the consensus sequence.
CC   NDNAX3_CE shares common termini with NDNAX1_CE and NDNAX2_CE
CC   elements.
CC   These elements do not have terminal inverted repeats.
XX
SQ   Sequence 1593 BP; 475 A; 314 C; 282 G; 522 T; 0 other;
     tctgccaagc agcctctaat aaatgccgag tgtacagact ccgccccttt ttcgcgtttt        60
     ttcgcgtttt ttttggcttg cgaaaaaatg tcacacttcg ttttcattaa taactccaga       120
     gccgtgtgac ttcatgctct aatatttgaa atcctactag aaatattttg ccccacggtg       180
     gagcaaaaaa cggcactaag ttcggagcaa aattgagccc agggcggctt tccccagttt       240
     gaaaaaattt tttgttgctc tttttacccc caaaaaagca tgttttaatt gaattaaaat       300
     tcgggttttg ctcggttttg ttccaaattt atgtgcaaga tactactcag agagactgat       360
     tttttgaaaa aaagtttgag ttcataagtg caaaaggaaa aaagttgtga taaaacaaaa       420
     ggccaaaaaa tgacattttg ccaaaaaaaa atttttttcc gaaaaagtag tttttcgtct       480
     ttatctcaag ttctacttca tcttttttga tatttttttt gtttacccca cgtaaaaaag       540
     tacgctgaac acgattttta actcagaatt gagaaaagtt ctatgagtcg gccgagcaag       600
     acgaataagt gccaaatttt gcacactttc ccattttcgc gaatctactt tttcaatcat       660
     aactcggtca gttttcaagt tttcttagtt ttccaaaaat tgacgtgtag gtctcatcaa       720
     gacgcatcga gacatataaa atttgtaaaa agttcagtgg gaaaattttt caagaaaaaa       780
     ataattcaaa aatttagtac tggggggagt ggtttcctgg gtctcctgaa cattttttcc       840
     actaaagttt tgcggaatgt atttttgatt catagttttt gattttattt aatggaagat       900
     gaagtttcgt cgcattagaa atactctgcc aagagatatt atttttatta attttcaggc       960
     caaaacttgt tttttttcta tacatctgtc tgtgtacaag atatagccct caactgtacg      1020
     tctccttttc gggaaatcaa taatgagtac aatcctgtaa taaaattttc aaaaattcgt      1080
     tttcccgctg acatatcagt aataaacggt tttcgaacgt cttttctcaa attgtaatta      1140
     ttgaagaaag cggaatcgaa agacgactcc ctccagaaat ttttcttccc tacatcccag      1200
     tttgaggtgt ctcccgcatg gccgagtggt tagtgcgtat gactgcagaa attttggtag      1260
     ttggttcaat tctaccaagt gacaaatttt tttgtttttt tgtgagtaat cgggattcga      1320
     atagaaatac tcgattttat acaaaatatg ggtacgtctc ccctaatata aagcctcctc      1380
     aaacttcaat caatcaaaac tcagctttaa ctgattcatc gggtgcatct gtttttggtc      1440
     aaaccgaact caaaaatcaa gaagactccc attgacctac tgaaattttc acgaaccctc      1500
     taacaggttc gaggcgaagc cgagaaccta cgcccggcaa ggggactcgc cttacacccc      1560
     ctacaactgg cgggcccgca gggcccgcta gtc                                   1593
//
ID   RCS5        repbase; DNA   ; CEL   ; 738 BP.
XX
AC   X68553;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   C.elegans RcS5 repetitive DNA sequence.
XX
KW   Repetitive element; RcS5 element; RCS5.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-738
RA   La Volpe A.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (02-OCT-1992)A. La Volpe,
RL   Intern Inst of Genetics & Biophysics, Via Marconi 10, 80125
RL   Napoli, ITALY.
XX
RN   [2]
RP   1-738
RA   Cangiano G., La Volpe A.;
RT   "Repetitive DNA sequences located in the terminal portion of the
RT   Caenorhabditis elegans chromosomes.";
RL   Nucleic Acids Res 21, 1133-1139 (1993).
XX
DR   GenBank; X68553; Positions    1332    2069.
XX
SQ   Sequence 738 BP; 260 A; 112 C; 122 G; 244 T; 0 other;
     gaggcggttg taaactattc gttttttagc aaaaattaaa aaaaaaactt tatttaaatt        60
     taaaaataaa tatcatatgt tatcatacct tagaatatca cgccttaatt tagtaatcat       120
     tttagttcat aagtgtgaga gaaagaaaaa tggattaatc atcggaatta aatatcatca       180
     gaatgattat attcatcaaa ggtcccactt tacttgaggg ttaatttgat cgatataaaa       240
     tgtttatctc atgtgaagaa aggttcgaat tctgtaccta tgaatgctgc cgatatttga       300
     attcctatct catggaaaga aggcctttct tgtgggaaga acggtgttat aaaaaaatat       360
     acgcaggtac agaatttgaa cttttcttcc catgagagag gaatttgaat attggcattc       420
     tataacttca ctaagaaaaa aaatctccaa aggttgatcg cgaatatgta gagattcgtc       480
     gcatcccttc aaatattacg aaatttccaa gtttcttagt gataatcttt attcagatta       540
     ctgaaaaata tacacagatt acttttgagt tgcctgcgaa gttattgtaa aagccaaggc       600
     gagctgttgg tacagaattt gaagttttct tcccatgagt taggaatttg aataatggca       660
     ttctataact ttactaagaa aaaatatccc caaaggttgc tcgcttccct ccaaatatta       720
     cgaaatctcc aagtctta                                                     738
//
ID   CELE32A     repbase; DNA   ; CEL   ; 364 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans CELE32A repetitive element (a consensus).
XX
KW   MITE; CELE32A.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-364
RA   Belknap R.W.;
RT   "CELE32A.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RP   1-364
RA   Jurka J.;
RT   "CELE32A.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 364 BP; 108 A; 67 C; 65 G; 114 T; 10 other;
     actgtagttt tcgctacgag atattttcgc gtcaaatatg ttgcttaata cgcattctca        60
     gaattttktt tttttttgaa cacggcccgg caagtggtac atccatgcaa atgcgctcta       120
     ctgataattt gagtktagac caggtttggg cgcgtkataa cgaaaaaagc tttggtccaa       180
     aaaatttaga atttattttc ggacattttt tatatgcatc acaaaaaaan tggaccaacc       240
     gtttttgaga aaaacgcgcc caaacgtcca ggtatacggt agacaaattg cgtacaggta       300
     ccacttctcg ggccgtgtga aatttaaaat cataatthtt ttccnnkama anaatcgatt       360
     tttc                                                                    364
//
ID   CELE14A     repbase; DNA   ; CEL   ; 177 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE14A nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; CELE14;
KW   CELE14A; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-177
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
RN   [2]
RP   1-177
RA   V V., Jurka J.;
RT   "CELE14A.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [2] (Consensus)
XX
CC   Original classification of CELE14A as a Mariner-related
CC   nonautonomous
CC   DNA transposon [1] is wrong since CELE14A generates 6 bp-long
CC   duplications of non-specific target sites. CELE14A has 51 bp-long
CC   terminal inverted repeats; its copies are ~92% identical to the
CC   consensus sequence.
XX
SQ   Sequence 177 BP; 45 A; 40 C; 41 G; 51 T; 0 other;
     cacgtggtgt caggctgtct cattgcggtt tgatctacga aaaatgcggg aatatttttc        60
     cagaaaaatt gtgacgtcag cacgctctta accatgcgaa atcagatgag atgtctgcgt       120
     ctcttctccc gcatttttcg aagatcaaag cgaaatggga ctttctgact ccacgtg          177
//
ID   CERP6       repbase; DNA   ; CEL   ; 1940 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans transposable element - a consensus.
XX
KW   Repetitive element; CERP6.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1940
RA   Jurka J., Surzycki S., Belknap W.;
RT   "CERP6.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [1] (Consensus)
XX
CC   A palindromic sequence, distantly similar to TC5 DNA transposon
CC   at positions 228-310 and 1643-1725.
XX
SQ   Sequence 1940 BP; 665 A; 319 C; 328 G; 628 T; 0 other;
     ttaaaagcaa agggtgtgcg cctttaaagt gtactgtagt ctgaaagtat tgtttctgtg        60
     gcaaaatgtt ttaatcgaaa atctattaaa aatcgataaa tattccgcgg gacatggtac       120
     cgtattttta aaagaaaaat tgtaaagggt aatagttacc gtaataccct aacaagggaa       180
     gtctttgagg gggtccgtag atttggggtt ctcatgctaa aattcctaca gaagagtgtt       240
     agttatgatc tctccaaaaa atttagctgc ccaggtcaag tttcagcaaa gttatgacgt       300
     tttgaaattt cagttaaaaa caccattgaa atccactgtc ttaccatgca atccacgcaa       360
     atctcagctt gcgtgaccac cgaaaatgtg acacccacca cattgagttg aaaaatgtcc       420
     tcggtggccg agttgggagt gcgcgcgtct gataagattt aagctttggt tcgattcctt       480
     ctatttttga aatatttttg taagttgaat aaagttgtaa aacaactcat tcaaacattt       540
     ttgcgcattt ttaaagtgat tttattctta ttcgggaacc tagaatcatt gtccgcactt       600
     tttggaaatt tttatttttt tcatttttgc tcaaaatttc ttgatcaact ccaagcaaaa       660
     aattcaaaaa atttcatttt tctaaacaat tatgaaattg ctatgttgtt gttcagaaat       720
     gtatgaaacg tacattacac aagttttaac tctctattcg caagtaaacc gtcgaaatga       780
     tctacatctc acgaactttg tgcaaaatat ttaaccaact ttgaagttgc ataacttcgt       840
     tgagataaat tattttgaaa aatgatcaac taacaaaatg tttgttgaat aatagtgaac       900
     aaagttttaa ttataaactt tttgatacct tcagccacca aaaagttgtg accgttttcc       960
     aaaacacaat gttaatagaa aaactagcca aatgccaacc ttgttttctt ctttgtagct      1020
     ggaggtatca aaaagtttat aactaaaact ttgttcacta ttattcaaca aacattttgt      1080
     tagttgatca tttttcaaaa taatttatct caacgaagtt atgcaacttc aaagttggtt      1140
     aaatattttg cacaaagttc gtgagatgta gatcatttcg acggtttact tgcgaataga      1200
     gagttaaaac ttgtgtaatg tacgtttcat acatttctga acaacaacat agcaatttca      1260
     taattgttta gaaaaatgaa attttttgaa ttttttgctt ggagttgatc aagaaatttt      1320
     gagcaaaaat gaaaaaaata aaaatttcca aaaagtgcgg acaatgattc taggttcccg      1380
     aataagaata aaatcacttt aaaaatgcgc aaaaatgttt gaatgagttg ttttacaact      1440
     ttattcaact tacaaaaata tttcaaaaat agaaggaatc gaaccaaagc ttaaatctta      1500
     tcagacgcgc gcactcccaa ctcggccacc gaggacattt ttcaactcaa tgtggtgggt      1560
     gtcacatttt cggtggtcac gcaagctgag atttgcgtgg attgcatggt aagacagtgg      1620
     atttcaatgg tgtttttaac tgaaatttca aaacgtcata actttgctga aacttgacct      1680
     gggcagctaa attttttgga gagatcataa ctaacactct tctgtaggaa ttttagcatg      1740
     agaaccccaa atctacggac ccccctcaaa gacttccctt gtaaattcaa ttacctagtt      1800
     tttagaaaaa taaaaataga aaagcaattt aatttttttc aggaaataat tgccggaatg      1860
     cttgatctac caccgaaaaa gtggagaaaa cgagaaaccg atgaaatgtc gaagcagaag      1920
     tctcgtgctg aaaatttcaa                                                  1940
//
ID   CEREP2A     repbase; DNA   ; CEL   ; 249 BP.
XX
AC   .
XX
DT   07-SEP-1999 (Rel. 3.7, Created)
DT   07-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   CEREP2A dispersed repetitive element - a consensus.
XX
KW   dispersed repetitive element; CEREP2A.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-249
RA   V V., Jurka J.;
RT   "CEREP2A.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   This element does not have any noticible hallmarks of known
CC   retroelement or DNA transposons. There are about 200 copies
CC   of CEREP2A in the C.elegans genome. They are ~95% identical
CC   to the consensus sequence.
CC   CEREP2A encodes 83 aa-long protein that has distant similarity
CC   to one of the conservative domains in mariner/Tc-like
CC   transposases.
XX
SQ   Sequence 249 BP; 80 A; 80 C; 35 G; 54 T; 0 other;
     accagccgtg gaccgcacct ccggcgcggc ccccgacttc tggggctgaa aactaatttt        60
     tctgaaacta ccgtaaccct acagtattcc taccgtacca ctattgtacc actacagtac       120
     cccgactata tccctacact aaccccaact cactatccct ccagaagcca aaacttcaca       180
     gactacaaag actacataga ctacaaacta tggacacaca gaataagcgc tttatatata       240
     gtaaatgat                                                               249
//
ID   RC14        repbase; DNA   ; CEL   ; 169 BP.
XX
AC   L00589;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Caenorhabditis Rc14 repetitive element.
XX
KW   RC14; Repetitive element.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-169
RA   Ruvolo R.V., La Volpe A., Naclerio G., Coulson A., Levitt M.A.;
RT   "Tandem repeats and SINE-like elements associated with insertion
RT   sites of the Tc2 transposon of C. elegans.";
RL   Unpublished (1992).
XX
RN   [2]
RP   1-169
RA   Naclerio G., Cangiano G., Coulson A., Levitt M.A., Ruvolo R.V.,
RA   LaVolpe A.;
RT   "Molecular evolution of clusters of satellite-like DNA sequences
RT   in Caenorhabditis elegans.";
RL   J. Mol. Biol (1992)In press.
XX
DR   GenBank; L00589; Positions     104     272.
XX
SQ   Sequence 169 BP; 38 A; 55 C; 19 G; 57 T; 0 other;
     ctcccatgct tacatttccc atgcctacaa ttcccatgct tacacatgtt cccgtacata        60
     caaatgttcc catgcttaca ctcagtagta acagtgttcc catgcgttca gctcattttt       120
     tctcgttccc atgctacatt tcccatgctt acacgtattc ccgtacata                   169
//
ID   HELICOPY2   repbase; DNA   ; CEL   ; 249 BP.
XX
AC   .
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOPY2 is a nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HELICOP superfamily; CEREP2A;
KW   HELICOPY2.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1
RA   V V., Jurka J.;
RT   "HELICOPY2.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
RN   [2]
RP   1-249
RA   V V., Jurka J.;
RT   "HELICOPY2.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   There are about 200 copies of HELICOPY2 in the C.elegans genome.
CC   They are ~95% identical to the consensus sequence. The original
CC   name, CEREP2A [1], and orientation have been changed because
CC   this repeat is a nonautonomous HELICOP-like DNA transposon.
XX
SQ   Sequence 249 BP; 54 A; 35 C; 79 G; 79 T; 2 other;
     atcatttact atatataaag cgcttattcy gtktgtccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgaagtttt ggcttctgga gggatagtga gttggggtta gtgtagggat       120
     atagtcgggg tactgtagtg gtacaatagt ggtacggtag gaatactgta gggttacggt       180
     agtttcagaa aaattagttt tcagccccag aagtcggggg ccgcgccgga ggtgcggtcc       240
     acggctggt                                                               249
//
ID   NDNAX2_CE   repbase; DNA   ; CEL   ; 2846 BP.
XX
AC   .
XX
DT   12-NOV-1999 (Rel. 4, Created)
DT   12-NOV-1999 (Rel. 4, Last updated, Version 1)
XX
DE   NDNAX2_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   nonautonomous DNA transposon; DNAX family; NDNAX2_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2846
RA   Kapitonov V.V., Jurka J.;
RT   "NDNAX2_CE.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   NDNAX2_CE is a putative non-autonomous DNA transposon;
CC   its copies are 98% identical to the consensus sequence.
CC   It shares common termini with NDNAX1_CE element.
CC   These elements do not have terminal inverted repeats.
XX
SQ   Sequence 2846 BP; 797 A; 633 C; 524 G; 878 T; 14 other;
     tctgcctcct tcctaaaacc cccatcttgc cacacacacg cgttttcggt gttcaaaaaa        60
     tgttcaaaaa atgtccgaaa aaattgtaat acaactttga acgtttatat ctcggctctc       120
     actgaaccga tttttgaaat tcttttttct ctacattcac aaaatatagc gacgtgtgtt       180
     catctaaaag ggggttgatt ttggagcatc ctgtcggctc cacaagcgga aaaccacacc       240
     cckcttgttt ttgcgcacac cgaagtactg gccgaaaacc actttaaatt gaaggaaaat       300
     tcgagtttat gttcaaaacg tttgagactc gaaacttaag ttctcctttt caatgcctat       360
     ccattgtatc taagttcatt gtgatatctc tattcgttat tttaaaaacg ataattaaag       420
     ttttgccaaa atttctgcac ctcccccctt ttctcacaca cacacaccca cctccccttt       480
     tcatatttgg tgtgttttcg gccacatttt caccattgtt tcggtcaaat ctccgttagt       540
     cttgctcttt ttccaaattt ttttttggaa aaatgttcat cacatcgaga ggaagcggaa       600
     aatataattt tttgtttcaa aaaaggtaaa taatagtctc aaaaatagaa aaaatgaaca       660
     cttctttcaa acaatttaca tttttccata aaattcacaa actttccact atcgttccgg       720
     tttttatgtt aaatttagaa ttaatagaat gatttaaaat ggaatctcaa atcacagctc       780
     gatccgatca tttttcgcgg agataggtta tttaattttt gcacatggaa atccagtttt       840
     cctctgttcc tggacaagtt ttcaactatc cttttgattt tatgttttaa ttttgataat       900
     tttcactaaa gcaaggtaga caaactaaat ttggtcggtc ttgacaactt tcagcacatt       960
     trkggaagtt ttgagcttcc aggccttccc agaaggtgat atgtttcaat ttttgttatt      1020
     tttaaaaata ataaccgccg tattattcta ctttttacgc caatttcaaa aattatttwa      1080
     tttttctcaa actcctacta tgagcaaagt tatgacggat tgaagtttta gtgcataact      1140
     cctcacaggc cgcctctcct cacaagaggc tgcatgcgtg cgggtggctg gaaaatgttt      1200
     tctttccaaa aaaaaacata gaaaggcact ttaactctaa gaakattcag ttcactttga      1260
     acatatactt caggcattgc aggccggagg cctgctgtgc gattacaact gtttcaagcc      1320
     cagattgtct ggattgagtg ccgcaggcac tcttactctt agaagacgca gtcaacctta      1380
     aatcattata ccaaggcagg ccggaggcct gatatgcgat tactcttaga taagtttgat      1440
     ttagaaagct tttattattt tcagttttct aaaacaatcc ccattcccga agggctgggg      1500
     gcccacaggc gttcacgatt ttccaaaaaa gtgaaatgtt tattttttgg ttatttttca      1560
     aatttgaaaa caccatacga ttttggttta aatactaaat tgaaatagaa atttcgctct      1620
     cttacgatct acgccctacc cactgctaag cctggcaagt cgcagatttg ctatcaacac      1680
     tattggaaac tgtgggctgg ctttgatcct attccaagca gatctgttat tcactcaagc      1740
     ctaataacca ggtttgaggg ccgcaggccc gaatactctt graaactgtg ggctggcttt      1800
     ratcctattc taagcagagc aggctgtagg cctgcgacgc ggttgttatt yactcaaacc      1860
     taacaaccag gttcgagggc cgcaggcccg aatactcttg gaaactatgg gctggctttg      1920
     atcctattct aagcagatat gttattcact caagcctaat aaccaggttt gagggccgca      1980
     ggcccgaana ctcttgraaa ctgtgggctg gctttgatcc tattctaagc agatctgtta      2040
     ttcactcaag cctaataacc aggtttgagg gccgcaggcc cgaacactct tggaaactat      2100
     gggctggctt tgatcctatt ctaagcagat atgttattca ctcaagccta ataaccaggt      2160
     ttgagggccg caggcccgaa tactcttgaa aactgtgggc tggctttaat cctattctaa      2220
     gcagagcagg ctgtaggcct gcgacgcggt tgttatttac tcaaacctaa caaccaggtt      2280
     cgagggccgc aggcccgaac actcttggaa actatgggct ggctttgatc ctattctaag      2340
     cagagcgcgt atgttattca ctcaagccta ataaccaggt ttgagggccg caggcccgaa      2400
     tactcttgaa aactgtgggc tggctttaat cctattccaa gcagagcagg ccgtattcat      2460
     gagttttcct tttccttcac cgttttttgt agttcacagt gatgattgaa racacgctta      2520
     ttttattgat aatacattca aattattctt gaacaaaatc tcagcctaag ttattcgtac      2580
     agtgtcggtc ctggagcaat gaatcaaagt ttaaagagat ttcactttac acagtaagag      2640
     cttcgaggcg aagcctcaaa cctgaatagt caagttttct aaacatatac cccactcctg      2700
     aaataatttc aargagatct cgaataaccc swtaacaggt tcgaggcgaa gccgagaacc      2760
     tgcgccagct accttgctaa taacttagag cgaattaacc ctatccccat tcccgaaggg      2820
     ctggcgggcc cataggcccg ctagtc                                           2846
//
ID   RCA1        repbase; DNA   ; CEL   ; 84 BP.
XX
AC   X61258;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   C.elegans repetitive DNA.
XX
KW   Repetitive DNA; RCA1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-84
RA   La Volpe A.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (16-AUG-1991)A. La Volpe, CNR
RL   International Institute of Genetics and Biophysic, Via Marconi
RL   10, 80125 Naples, ITALY.
XX
RN   [2]
RP   1-84
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence
RT   in Caenorhabditis elegans.";
RL   Unpublished.
XX
RN   [3]
RP   1-84
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226, 159-168 (1992).
XX
DR   GenBank; X61258; Positions     398     481.
XX
SQ   Sequence 84 BP; 36 A; 13 C; 12 G; 23 T; 0 other;
     gacgtcacag actacaaaga ctacatagac tacaaactat ggacagacga actgtatttt        60
     tttatataaa atataagtaa tgat                                               84
//
ID   CERP5       repbase; DNA   ; CEL   ; 792 BP.
XX
AC   .
XX
DT   28-JUL-1999 (Rel. 3.5, Created)
DT   28-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   C. elegans repetitive DNA (a consensus).
XX
KW   Repetitive DNA; CERP5 repeat; CERP5.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-792
RA   Jurka J.;
RT   "CERP5.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [1] (Consensus)
XX
CC   Nearly perfect palindrom.
XX
SQ   Sequence 792 BP; 253 A; 143 C; 144 G; 249 T; 3 other;
     cactgcaact ttttcctcac gagggacgag gaaaagtggt ttctaggcca tggccgaggg        60
     gccgacaagt ttcagcggcc atttatcttg ctttgttttc cgcctgtttt cttttgtttt       120
     tcacagattt ttcccgtttt ttcttattaa aactgataaa taaatatttt ttgcagatgc       180
     taaaacaatt tccaagtaaa aaaattatgt attcagtsgg caagcagcgg tgaaagtggt       240
     caatgtaata tgatggatta cgggaataca aaacctaaac tttttctgaa acatgataca       300
     tatgctgctt agatgctgaa actacctgat tttcataacg agaccgctga aaaagttttg       360
     agattttcaa aattcaactt tttgtgtgaa aaagtcgaga ttttcacaya aaaagttgaa       420
     ttttgaaaat ctcaaaactt tttcagcggt ctcgttatga aaatcnggta gtttcagcat       480
     ctaagcagca tatgtatcat gtttcagaaa aagtttaggt tttgtattcc cgtaatccat       540
     catattacat tgaccacttt caccgctact tgccgactga atacacaatt ttttcacttg       600
     gaaattgttt tagcatctgc aaaaaatatt tatttatcag ttttaataag aaaaaacgga       660
     aaaaatctgt gaaaaacgaa agaaaacagg cggaaaacaa agcaagataa atggccgctg       720
     aaacttgtcg gcccctcggc catggcctag aaaccacttt tcctcgtccc tcgtgaggaa       780
     aaagttgcag tg                                                           792
//
ID   HELITRONY1A_CE repbase; DNA   ; CEL   ; 3084 BP.
XX
AC   .
XX
DT   26-FEB-2001 (Rel. 4.2, Created)
DT   26-FEB-2001 (Rel. 4.2, Last updated, Version 1)
XX
DE   HELITRONY1A_CE is a non-autonomous DNA transposon - a consensus.
XX
KW   Non-autonomous DNA transposon; HELITRON superfamily; RCA1; RCC9;
KW   RCD1; RC35; HELICOPY1; HELITRONY1_CE; HELITRONY1A_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3084
RA   V V., Jurka J.;
RT   "HELITRONY1A_CE.";
RL   Direct Submission to Repbase Update (FEB-2001).
XX
CC   [1] (Consensus)
XX
CC   There are about 50 copies of HELITRONY1A_CE in the C.elegans
CC   genome.
CC   They are ~95% identical to the consensus sequence. There are
CC   several
CC   minor subfamilies of HELITRONY1A_CE in the genome. HELITRONY1A_CE
CC   copies harbor one half of a PALTA3_CE-like DNA transposon
CC   (positions
CC   2890-2715) inserted into an ancestor of HELITRONY1A_CE. About 20
CC   ancestral copies, free of the PALTA3_CE-like insertion, are
CC   present
CC   in the genome.
XX
SQ   Sequence 3084 BP; 1063 A; 388 C; 655 G; 978 T; 0 other;
     tcattactta tatataaaaa aatacagttc gtctgtccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgacgtcac gcccaaagtc agtgagagtt gtgggcgggg cacccttcgt       120
     ggtgagaccc atcgtggtga gacccttcgt ggtgagaccc atcgtggtga gacccttcgt       180
     ggtgagaccc atcgtggtga gacccatcgt ggtgagaccc ttcgtggtga gacccttcgt       240
     ggtgagaccc aaaattttgg cgggaaattc aaattttctg tgaaaaacat tttggcggga       300
     aattcaaatt ttctgtgaaa aattttttgg cgggaattca aattttctgt gaaaattttt       360
     tggcgggaaa ttcaaatttt ctgtgaaaaa aattttggcg ggaaattcaa attttctgtg       420
     aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa cattttggcg ggaaattcaa       480
     attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa tttttggcgg       540
     gaaattcaaa ttttcagtga aaaaaatttt ggcgggaaat tcaaattttc tgtgaaaaaa       600
     attttggcgg gaaattcaaa ttttctgtga aaaaattttt ggcgggaaat tcaaattttc       660
     agtgaaaaaa attttggcgg gaaattcaaa ttttcagtga aaaaattttt ggcgggaaat       720
     tcaaattttc tgcgaaaaaa atttttggcg ggaaattcaa attttctgtg aaaaaaattt       780
     tggcgggaaa ttcaaatttt cagtgaaaaa attttggcgg gaaattcaaa ttttcagtga       840
     aaaaaatttt ggcgggaaat tcaaattttc agtgaaaaaa ttttggcggg aaattcaaat       900
     tttcagtgaa aaaattttgg cgggaaattc aaattttcag tggaaaaaat tttggcggga       960
     aattcaaatt ttcagtgaaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa      1020
     ttttggcggg aaattcaaat tttcagtgaa aaaattttgg cgggaaattc aaattttcag      1080
     tgaaaaaatt ttggcgggaa attcaaattt tcagtgaaaa aaattttggc gggaaattca      1140
     aattttcagt gaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa attttggcgg      1200
     gaaattcaaa ttttcagtga aaaaaatttt ggcgggaaat tcaaattttc agtgaaaaaa      1260
     atttttggcg ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt      1320
     cagtgaaaaa aattttggcg ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa      1380
     ttcaaatttt cagtgaaaaa aattttggcg ggaaattcaa attttcagtg aaaaaaattt      1440
     tggcgggaaa ttcaaatttt cagtgaaaaa aattttggcg ggaaattcaa attttcagtg      1500
     aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa aattttggcg ggaaattcaa      1560
     attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa aattttggcg      1620
     ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa      1680
     aattttggcg ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt      1740
     cagtgaaaaa attttggcgg gaaattcaaa ttttcagtga aaaaaatttt ggcgggaaat      1800
     tcaaattttc agtgaaaaaa attttggcgg gaaattcaaa ttttcagtga aaaaaatttt      1860
     ggcgggaaat tcaaattttc agtgaaaaaa attttggcgg gaaattcaaa ttttctgtga      1920
     aaaaaatttt tggagggaaa ttcaaatttt ctgagaaaaa gattttggcg ggaatttcaa      1980
     ttttggtttt ggaatcatct ggaaaattcc agaaaattct ataatgttct agaactttct      2040
     ggaaaattcg agaaaattct ggaatgttcc agaactttct ggaaagttcc agaaccttct      2100
     ggaaagttcc agaaccttct ggaaaattcg aaaaaaattc tggaatattc gtggtgagac      2160
     ccataaattt tggccgaaaa ctcaaaattt ctgagaaaaa atttttggcg ggaaattcaa      2220
     attttctgag aaactttttg ttagcttaag taccacctgg aactggcgag acccatcgtg      2280
     gtgggaccct taaaaatatg ggcgggaact tcaaaattta tgagaaaaga aattttggcg      2340
     ggaattcaaa tttccaagaa aaattttggc gggaaattca aattttctga gaaaaagatt      2400
     ttgacgggaa attcaaattt tctgaggaaa acatttggcg ggaaattcaa attttggttc      2460
     tggaatcaat tttttgtttc agcaccttct ggaagtttca agaaaattct agaatgttct      2520
     agaatcatct ggaaaattca aaaaagttct gaaatgctct acaacctcct ataactgtag      2580
     gagtttttat ttgtttcgtc acatctatat tcaaagaact tactattagt agttaattat      2640
     tcagacttct ccagttaagg aaagttatta acttattgaa aaaactgtaa ctctgtggaa      2700
     ttttttcggg ggagggggac agctcgccac gccaacagtg agaaaaatag tgtggtgcgc      2760
     ggacctcgaa tgatgtcggc ggctgatatt acctggggta ccgctttttg ccttttcccc      2820
     gtgagtgaac gagaaaaagg cggggactat tttggcgtac acgcaacgca gttttataat      2880
     tttgagtgta gaaaaatcag aacattctaa ctgtctcttt gaattttctg aatcgaatac      2940
     catggaagaa gaaaatgcga tttaatcgat gaagtttcaa cttttttaat gatacatttt      3000
     tgaatgatta aaaggacatc tatgtgttat acattttaaa ctccgccagt cgttggccgc      3060
     gccggaggcg cggtcatcgg ctgg                                             3084
//
ID   HELICOP1    repbase; DNA   ; CEL   ; 8486 BP.
XX
AC   .
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOP1 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; helicase; HELICOP superfamily; HELICOP1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-8486
RA   Kapitonov V.V., Jurka J.;
RT   "HELICOP1.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
CC   [1] (Consensus)
XX
CC   HELICOP1 is a DNA transposon; it encodes a DNA helicase-like
CC   1466-aa protein which is putatively involved in proliferation
CC   of HELICOP1 copies. There are several copies of HELICOP1 in the
CC   genome; they are ~99% identical to the consensus sequence.
CC   Approximately 2% of the C. elegans genome belongs to molecular
CC   fossils of nonautonomous elements transposed recently (<10 Myrs)
CC   by autonomous HELICOP1-like elements. HELICOPY1 and HELICOPY2
CC   are examples of these nonautonomous elements. Minisatellite-
CC   like repeats RCA1, RCD1, RC35, RC123, RCC9, reported previously
CC   in the literature (Naclerio,G. et al., 1992, J. Mol. Biol. 226,
CC   159-168) are portions of HELICOP-like transposons
CC   (Kapitonov,V.V).
CC   The HELICOP1 protein is encoded by 9 putative exons and its
CC   CDS can be defined as:
CC   1930-2087; 2135-2412; 2533-3428, 3476-3799, 3850-4520, 4581-5207;
CC   5254-5521; 5574-5762; 5814-6803.
CC   The HELICOP1 protein:
CC   MDNELTSRPDSIMDTEPTTLPDSAMDTKPTNLPDFPSTSQEPVSRRTRSRTLSDNSNAVW
CC   KRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKRVWMKKKRNEVAKTHDT
CC   SSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELRH
CC   LLLDDSSHARNFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDP
CC   GQRPAFGQIYILDTDQATDERLGNPANADCDPAVMAELSSLLLRTNPYAQAYKMMAEVEE
CC   KENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLPQANEVAVVFVGEDDDVPTTRSLAVHP
CC   RGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHPDLEKRPSEKKQGRITQKMYYSYLLMER
CC   SGVFNPLHHGRALFQQFAVDSWVKIEQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPG
CC   RRIVLPSSFPGSPRAMVQNFQDAMAIVSKFGKPDIFLTFTCNPAWTEISENLGPRQSASD
CC   RPDLIARVFKLKVDALFDDLLNRDILGHVAAYISVFEWQKRGLPHVHMLLTMAENSKPRT
CC   SEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQNPHSPCMVDGHCSKRYPKDFHPS
CC   TTLNVDGYPGYRRRDDGRYVEYGTQHLDNRRVVPYNKWLLLRYNAHMNVEICGFIEAVKY
CC   LFKYVYKGHDRAALNIIQNVRGDGNVVDEIREHLDARYVCAPEAIHHILGFKLEKKASVT
CC   TQQLESSSQTDTTLTAWFKINQKSKDIAESGNIPSTFVDSRQFFYMDMPTHFTFVKKDGW
CC   KVRGRGTRQIGRMYTVPPYETERYALRILLLNIKGATSFEDLRTVLDENNVPVVYATYVE
CC   AAKAQGLLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILFNEVHDLNALWDAVKWDLSED
CC   FRHAGAGKEEAEALAYFDIESRLQRVGKRFDVTKPSINPPPIDLDTVNPAQCASEGNRLL
CC   ATLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGKTYLYITLYNICVGRGLKVACTAW
CC   TGIAANLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAENDVFIWDEASMVPKTAL
CC   DTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLWTEFQIL
CC   HLISNMRVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVIDPTTS
CC   DPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSP
CC   SSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTII
CC   PRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALS
CC   RVRTKEGLIVKSSSNIVTNIVFNEVL.
XX
SQ   Sequence 8486 BP; 2477 A; 1919 C; 1648 G; 2442 T; 0 other;
     atcattactt atatataaaa aaatagtgtg ggtctgtcca tagtttgtag tctatgtagt        60
     ctttgtagtc tgtgacgtca cccctaaagt cactgagagt tgtgggcggg gccagtcacc       120
     cttcgtggcg agacccatcg ttgcgagacc cttcgtggcg agacccatcg tggcgagacc       180
     catcgtggcg agacccatcg tggcgagacc catacatttt ggcgggaatt taaattttct       240
     ttgaaatttt tcggcgggaa ttcaaatttt ctgtgaaaat ttttggcggt agctcaaatt       300
     ttctgaaaca tttttggcgg gaattcaaaa tttctctgaa aatttttggc gggaatttaa       360
     attttcttta aaattttttg gcgggaattc aaattttctg tgaaaaattt tggcgggaat       420
     tcaaattttc tgaaaaattt ttggcgggaa ttcaaatttt ctctgaaaaa ttttggcggg       480
     aatttaaatt tccttcaaaa ttttttggcg ggaattcaaa ttttctgaaa aatttttggc       540
     gggaattcaa attttctctg aaaaattttg gcgggaattt aaatttcctt caaaattttt       600
     tggcgggaat tcaaattttc tttgaaaatt tttggcgtga attcaaattt tctgaaacat       660
     ttttggcggg aattcaaatt ttctctgaaa atttttggcg ggaattcaaa ttttctttaa       720
     aattttttgg cgggaattca aattttctgt gaaaaatttt ggcgggaatt caaattttct       780
     gaaaaatttt tggcgggaat tcaaattttc tctgaaaatt tttggcggga atttaaattt       840
     tctttaaaat tttttggcgg gaattcaaat tttctgtgaa aatttttggc gggaattcaa       900
     attttctgaa aaatttttgg cgggaattca aattttctct gaaaattttt ggcgggaatt       960
     taaattttct ttacaatttt ttggcgggaa ttcaaatttt ctgaaaaatt tttggcggga      1020
     attcaaattt tcagtgaaaa attatggcgg gaaattcaaa tttttagaga aattttgtcg      1080
     gagtagtcaa atttaacttt gtttgacaga aaaaaaaagt atgaagggga agatagtttg      1140
     aaccacagaa ggttcacacc aaattcccgc acacaaccaa tgcgacatac cggcacattt      1200
     gtttagaatt taataaacct atagaagagg aaaacttcat gcaataaact tcgagaatct      1260
     tctagaaatt tcgaaaaact tctagatatc tcggattacg taacacttga cgacgtcaca      1320
     catgatgagg acattaagta aacgtcacag gctgaaccca atataatttt cagaaaattc      1380
     tggaaccttc tagaattttg gagaaacttc cagaaaattc tgatgacgtc acaatcactg      1440
     gcgtaacaaa aaataagtca cagattatga cgtcacatat gatgacacct atatagtctc      1500
     acattcggaa aaaaataggt gatgacgcca aatatatcag cgtcacagaa tgtgacgtca      1560
     taggctccgc ccattacagt aaaagaaact tctggaatct tccagaagtt gcagaaaaag      1620
     aagagaatgt tccaataacg tcacaaaaga tgacgtcact gataaagaca tcacaggaac      1680
     tacccattaa tataatcaag aagattctac aaccatctag aaacttctgg atttttcaat      1740
     gtagtgtgca aaatttaaat tttgactatt tcattgtgca atttttaatt tatattatta      1800
     caagtttaaa ctatattaaa tctgtccttc taaaacccaa ttcgtttcaa gacccaaaac      1860
     ttctagaatc ttccaaaaaa attctatata aggagaagaa aattatcatt ttctcattat      1920
     taatcaacaa tggataacga gctaacaagt cgacccgatt caataatgga tacggaacca      1980
     acaactctac ccgattcagc aatggatacc aaaccaacaa acctgcctga tttcccttct      2040
     acatcccaag aacccgtctc taggaggaca cgttccagaa cattaaggta aggatcttga      2100
     atgctcgtgg aattttacca ataagcagtt ttagtgacaa ctcaaatgct gtatggaaga      2160
     gagaacgtcg ttcaagagaa acttcgcaag aatcagaatc aagactcagg atggattggg      2220
     aaagaaaaaa ggaaaaacga gcttcaatgt cagaagagga aaaggctgag atgaaatata      2280
     aaaaaagagt atggatgaag aaaaaaagaa atgaagtagc aaaaacacac gatacgtcat      2340
     ctgttgccaa tcccaactac cttggaagca tgagatgtgt gtgcaagaac tgcaatgcca      2400
     gattctttca aggtatacat tttttcaaag tttagtgaac ttctacttct tatttccatt      2460
     ctgagtttca gattggtttt ttttcataac taataacata tactagcatc atacagaaat      2520
     ttaatgtttc aggagaggtg tcctcatcca acgatcatat caatatgtgt tgctacttcg      2580
     gattaacaac cacacttcaa gatcgattct ccaactaccc agatgaacta cgacatcttc      2640
     tcctcgatga ttcttctcac gcccgtaact tccagaagaa catccgacag tttaattcat      2700
     cgttcgcaat ggcatcgatg ggtgcacaac ttgatgttcc gagaggccgc ggcccatact      2760
     gcttcaaaat ccacggtcaa gtttaccatt ttgcgggacc acttcacccg gatccaggcc      2820
     agagaccagc atttggacag atctacatcc tggacactga tcaagcaaca gacgagaggc      2880
     ttggaaatcc tgccaatgcc gattgtgatc ctgctgttat ggctgaattg agcagtcttc      2940
     tgttgagaac caatccatat gcacaggcat acaagatgat ggctgaagtt gaagaaaaag      3000
     aaaattctga agctgcaaag gaaggacgac atccgggatg cgttcgactg atcttcgata      3060
     tttcgacaac taaggatcca cgacgttata acttgccaca agcgaatgaa gtcgcagttg      3120
     tttttgtggg cgaagacgat gacgtgccaa ccactcgctc tttggctgtt catccaagag      3180
     gaggaggact taagacgatt cgtgatatcg ataggatctg cgatcctctc acatatcctg      3240
     tattgtttcc aaatggaacc gacggatggc atcctgactt ggaaaagaga ccatcggaga      3300
     agaaacaagg aaggattact cagaagatgt actacagtta cctgctcatg gagagatcag      3360
     gagttttcaa tccactgcat cacgggcgtg ccctgtttca acagtttgca gtagactcat      3420
     gggtaaaggt aagaatacat gatctcatgt tcacaaaata atcatgtttt tgcagatcga      3480
     gcaaaacagg ctaaactatc atcgaactca tcaagttgat ttgaaagccg ccaactacaa      3540
     tgcggttcag gattatattg ctggagatac tgatgtccca ggaagacgca tcgttcttcc      3600
     atcatctttt ccagggagtc cccgagcaat ggtccaaaac tttcaagacg cgatggctat      3660
     tgtctcgaag ttcggaaagc ctgatatatt tttaactttc acgtgtaatc ctgcatggac      3720
     agagatttct gaaaacctcg gtccgcgaca atctgcatct gatcgtccag accttattgc      3780
     ccgtgtcttc aagctaaaag taagttgaag atctatattt aactcatcac tttcttcatt      3840
     gtgttccagg tagatgcgct gtttgacgat cttctaaatc gggatattct cggacacgtt      3900
     gccgcataca tttccgtgtt cgaatggcaa aaacgaggtc ttcctcatgt acacatgctg      3960
     ttaactatgg cagagaactc aaagccacga acctcggagg acatcgacaa gattgtgcaa      4020
     gctgagattc caaatcctga caacgagcca gaacttcatc gcattgtgac caccgccatg      4080
     atgcatcgtc catgtggtgc tcaaaatcct cactcgccat gcatggttga tgggcactgc      4140
     tcgaaaaggt atccgaagga ttttcatcct agcaccactc tcaacgttga tggatatccc      4200
     gggtatcgtc gaagggatga tggacgatat gtggaatatg gcacccaaca tctcgataac      4260
     aggagagttg ttccatacaa caaatggctt ctgctccgtt acaatgctca catgaatgtc      4320
     gagatttgtg gattcatcga agctgtaaaa tatctcttca aatatgtcta caaaggacat      4380
     gaccgtgctg cactcaacat catccaaaat gtacgtggag atggaaatgt tgttgatgag      4440
     atccgagagc atctagatgc tcgatacgtc tgtgctcccg aggcaatcca ccacatcttg      4500
     ggattcaaac tggaaaagaa gtccgataca gtttattgac tcgctgtgca tctcgaagga      4560
     ttccaaacga tctactttag agccagtgtc accacacaac aactcgaatc ttcatcacaa      4620
     accgacacga ctctcacagc ttggtttaag atcaaccaaa agagcaagga tattgcggag      4680
     agcgggaaca tcccttcgac atttgttgat tcacgccaat tcttctacat ggatatgcca      4740
     acgcacttca cctttgtgaa aaaggatggc tggaaggttc gaggaagagg cacaaggcag      4800
     ataggccgaa tgtacactgt cccaccatac gaaaccgaga gatacgcact tcgaattctt      4860
     cttttgaaca tcaaaggagc gacgtcattc gaagatcttc gtactgtttt ggacgagaac      4920
     aatgttccag tggtatacgc aacttatgtg gaagcagcaa aagctcaagg acttctgaat      4980
     gatgacagcg aatatttgaa gtctttgaaa gagtgggctg gatgctcagt gcccgcagct      5040
     cttcgctcaa tgtttgtcgc tatcattctt tttaacgaag ttcacgatct gaacgcactt      5100
     tgggatgccg tgaagtggga tctttctgag gattttcgcc atgctggagc agggaaagaa      5160
     gaggctgagg cacttgcata ttttgatatc gaaagtcgcc ttcaaaggta tcttttgagc      5220
     ttttttcaaa agtagattat aatatttttc cagggttgga aaaagattcg atgtcaccaa      5280
     accatctatc aatccgccac caatcgatct cgacacagtc aaccctgctc aatgtgcatc      5340
     agaaggcaat aggctccttg cgacactcaa tgatcaacag aaacgtgcag ctgaccagat      5400
     ccttgctgca ttagatgatg cctcgctacc ccgtcttttc tatttggatg ggcctggagg      5460
     gagcggaaag acttatctct acatcactct gtacaacatc tgtgttggaa gaggactgaa      5520
     ggtaaacttt caaccaaaca tactaaagtt atttcaatac tgcatatttt caggtagcgt      5580
     gtacggcgtg gacaggaatt gcagccaatt tactcccact cggtcgaaca tccgcttccc      5640
     ttttcaagct tgatattaga aatcaatgca agtcttctct tcatcagagg caattgaaag      5700
     aagcacaaga gctagcggag aacgacgttt tcatttggga tgaagcatca atggttccca      5760
     aggtattaga gtgattctga tcgtactaat caaatcattc attcaacttt cagacagccc      5820
     tcgacacggt cgatgtactg cttagggatc tcacaaagat cgatcagcca tttggtggga      5880
     agatcctgat cctcggagga gactttcgcc aaatcctacc tgtggtggag agaagctcta      5940
     gagctgatca agtagacgca tgcatcaaaa gatcaccact atggacagag tttcaaattt      6000
     tgcatctcat ctcaaatatg agagtaacat ctggagactc ggattggatc caattcctcc      6060
     tcaatgttgg cgatggatct gcaaatgact ctgattcaaa ggttacactc ccactctctg      6120
     tcatgtgcga tcacaacatc gtcgaggaag tgttcggagc agttatcgat ccaaccacgt      6180
     ctgatccatg tgacaacgtc atccttacac ctaagaacgt cgacgttgct caactgaatg      6240
     acgatgttca caatcgaatg gttggcgagg aaagaatcta tctgtcacga gatgaagtga      6300
     tcgtggaaca tcaagcggat actatgcact atcccaccga gtttctcaac aagatgtccc      6360
     catcatctct tcctccccat attctcaagc tgaagaaagg ctcagtgatc attctgctca      6420
     ggaatctcga tgtttccgct ggcctttgca atggttcccg tttcattgtc gaaacattgg      6480
     ccagtcactc acttggatgt cgctttgcaa ctggcgagag gaaaggacat ttcacaatca      6540
     ttccaagaat cgattgctat gatgataaga acatctcttt ccaactcagg cgcacacagt      6600
     tcccagttcg cttatcattt gcattatcga tcaacaaggc ccaaggacaa tccttttcta      6660
     aaatcggtct ctggattccc accgatgttt tcactcatgg acaactatat gttgctctat      6720
     caagagttcg taccaaagaa ggtcttattg taaaatccag ttctaatatt gtcaccaata      6780
     tcgtttttaa tgaagttctt tgaataaagc ttattattct tctctgctat ctcgctagac      6840
     aactcagctc tcttctgagg tctcactcga caactcatct cttctctgct atctcgctag      6900
     acaactcagc tctcttctga ggtctcactc gacaactcat ctcttctctg ctatctcgct      6960
     agacaactca gctctcttct gaggtctcgc tcgacaactc atctcttctc tgctatctcg      7020
     ctagacaact cagctctctt ctgaggtctc gctcgacaac tcagctcttc tctgctatct      7080
     cgctagacaa ctcagctctc ttctgaggtc tcactcgaca actcatctct tctctgctat      7140
     ctcgctagac aactcagctc tcttctgagg tctcgcccga caactcatct cttctctgct      7200
     atctcgctag acaactcagc tctcttctga ggtctcgctc gacaactcat ctcttctctg      7260
     ctatctcgct agacaactca gctctcttct gaggtctcgc tcgacaactc agctcttctc      7320
     tgctatctcg ctagacaact cagctctctt ctgaggtctc gctcgacaac tcatctcttc      7380
     tctgctatct cgctagacaa ctcagctctc ttctgaggtc tcgctcgaca actcatctct      7440
     tctctgctat ctcgctagac aactcagctc tcttctgagg tctcactcga caactcatct      7500
     cttctctgct atctcgctag acaactcagc tctcttctga ggtctcgctc gacaactcat      7560
     ctcttctctg ctatctcgct agacaactca gctctcttct gaggtctcac tcgacaactc      7620
     atctcttctc tgctatctcg ctagacaact cagctctttt ctgctatctc gctagacaac      7680
     tcagctctct tctgaggtct cactcgacaa ctcatctctt ctctgctatc tcgctagaca      7740
     actcagctct cttctgaggt ctcgctcgac aactcatctc ttctctgcta tctcgctaga      7800
     caactcagct ctcttctgag gtctcgctcg acaactccag ccttctcact cgcccccata      7860
     tgtaggagta tggggggagg gagtattatt ataaccacag aaacacaaca atgtgccaca      7920
     taagagacag gagatagtgc tcgcactacc cctgaatcac caaccctctc agaagcacct      7980
     ctgctcttat ctgggtctcg ctagacatct ccagtagttt gaccattctc agcaacactt      8040
     ttgctatttt agaatttttt tgccctcgcg gggatcgaac caaaaggtcc gcgcgccaat      8100
     gacgcgcgcg ctaccagctg tgccatgctg gaagcgattg aacttcgacc aataacaata      8160
     tacaacattt ctttatttgt caaagtgaaa tagttttgaa caaacactat tcaaaaaagt      8220
     aattttaaat tgaaattata tcaaattcac gatttgttcc caaatattta aaactgaaac      8280
     tcaataagag aagatctcat attctcactg ataatccgaa acatgacatt tgtttcaatg      8340
     ctgttttcaa cctcaagttg taaaattcaa aaaccaagct gaaaatatgt tttaaaaatc      8400
     tagaaactac aataattttt atgtgaattt ttggaaaaat ctcaagccag acggagcacg      8460
     cgccttggcg cgtgcgaacg gctggt                                           8486
//
ID   CERP1A      repbase; DNA   ; CEL   ; 1341 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   09-JUN-1999 (Rel. 3.3, Last updated, Version 3)
XX
DE   Nematode CeRep1.1 repeat DNA - a consensus.
XX
KW   CeRep1 repetitive sequence; CERP1A.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1341
RA   Felsenstein M.K., Emmons W.S.;
RT   "Structure and evolution of a family of interspersed repetitive
RT   DNA sequences in Caenorhabditis elegans.";
RL   J. Mol. Evol 25, 230-240 (1987).
XX
RN   [2]
RP   1-1341
RA   Jurka J.;
RT   "CERP1A.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
CC   [2] (Consensus)
XX
CC   This element has a 384 bp perfect palindromic structure.
XX
SQ   Sequence 1341 BP; 401 A; 264 C; 246 G; 430 T; 0 other;
     cgagggggta cgttttcgta aggggatttt ttcgtaagga acgctttcag tagggcaatg        60
     tgcggcgcgc cttttcgcaa gcccgccgca cagtccttcg caatgcgccg cacggctttt       120
     tgcaatgcgc cgcacgcttc ttcgtattta tttatttatt tttccaacag gaaatttcga       180
     acggaattca attaaaaacg gatttttaat ggaaattaat tagttttatt cgagctaaat       240
     acggatattt tcagaatttt cgatgacaaa aacgggtttc aatcgatttc gaatcgatca       300
     aaattaatat taatcgaaaa tgagcgtttc cttcccggaa aaagaagaac ttgatgctga       360
     gagtgatcca agcggagcca aacgcttttt tagaggcaag tattgatgtc taaagattaa       420
     ttgaagagtg aaaagtattt ttcagagttc acaaacaacc cgagtgagca gcaattttcc       480
     aagctgaagg caagtttctt tttgtagttt tttaagttct caaataggta tataacatcg       540
     atttgttttg ttttccagag aatgtatcat cacaacgact atcaaaacct gcgaggagtg       600
     attcaaaaga ccattcaact atcaaaatca ttgatcctag acttgaagag acgatccgga       660
     aatcgaacaa ccgctgtgcc attatacaaa aaccccgatt tctgtacttc agtgtttttg       720
     aattataccg gtttcagtgc ttttaatgag aaacttttcc cttttatgga aattccgaaa       780
     tgctatcact gatctctttg tttacctctg tgccattaga ttatagaaac aattttccat       840
     actcaggtta tccaaatttc gccatgattt ttcttactta atttaatcga attaactttt       900
     gtttgcagtt ttattttcca tttcgactga ataaaaaatc acttctatca ttttaatcgt       960
     ttggctccgc ctggatcact ctcagcatca agttcttctt tttccgggaa ggaaacgctc      1020
     attttcgatt aatattaatt ttgatcgatt cgaaatcgat tgaaacccgt ttttgtcatc      1080
     gaaaattctg aaaatatccg tatttagctc gaataaaact aattaatttc cattaaaaat      1140
     ccgtttttaa ttgaattccg ttcgaaattt cctgttggaa aaataaataa ataaatacga      1200
     agaagcgtgc ggcgcattgc aaaaagccgt gcggcgcatt gcgaaggact gtgcggcggg      1260
     cttgcgaaaa ggcgcgccgc acattgccct actgaaagcg ttccttacga aaaaatcccc      1320
     ttacgaaaac gtaccccctc g                                                1341
//
ID   HELITRON1_CE repbase; DNA   ; CEL   ; 8484 BP.
XX
AC   .
XX
DT   25-MAY-2001 (Rel. 6.04, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   HELITRON1_CE is a Helitron DNA transposon, a consensus sequence.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; HELICOP1;
KW   HELITRON class; HELITRON1_CE; helicase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-8484
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON1_CE.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
RN   [2]
RP   1-8484
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [2] (Consensus)
XX
CC   HELITRON1_CE is a HELITRON-like DNA transposon. It encodes a
CC   1466-aa protein, CEHEL1p, composed of the rolling-circle
CC   initiator
CC   and DNA helicase domains.
CC   There are several copies of HELITRON1_CE in the genome, they are
CC   ~99% identical to the consensus sequence.
CC   Approximately 2% of the C. elegans genome belongs to molecular
CC   fossils of nonautonomous elements transposed recently (<10 Myrs)
CC   by autonomous HELITRON1_CE-like elements. HELITRONY1_CE and
CC   HELITRONY2_CE are examples of these non-autonomous elements.
CC   Minisatellite-like repeats RCA1, RCD1, RC35, RC123, RCC9,
CC   reported
CC   previously (Naclerio,G. et al., 1992, J. Mol. Biol. 226,
CC   159-168),
CC   are portions of HELITRON-like transposons.
CC   The CEHEL1p protein is encoded by 9 putative exons.
CC   CDS: 1930-2087, 2135-2412, 2533-3428, 3476-3799, 3850-4520,
CC   4581-5207, 5254-5521, 5574-5762, 5814-6803.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="CEHEL1p"
FT                 /translation="MDNELTSRPDSIMDTEPTTLPDSAMDTKPTNLPDFPS
FT                 TSQEPVSRRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKR
FT                 ASMSEEEKAEMKYKKRVWMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNC
FT                 NARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELRHLLLDDSSHAR
FT                 NFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDPG
FT                 QRPAFGQIYILDTDQATDERLGNPANADCDPAVMAELSSLLLRTNPYAQAY
FT                 KMMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLPQANEVAVVF
FT                 VGEDDDVPTTRSLAVHPRGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHPD
FT                 LEKRPSEKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKI
FT                 EQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPGRRIVLPSSFPGSPRAM
FT                 VQNFQDAMAIVSKFGKPDIFLTFTCNPAWTEISENLGPRQSASDRPDLIAR
FT                 VFKLKVDALFDDLLNRDILGHVAAYISVFEWQKRGLPHVHMLLTMAENSKP
FT                 RTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQNPHSPCMVDGHC
FT                 SKRYPKDFHPSTTLNVDGYPGYRRRDDGRYVEYGTQHLDNRRVVPYNKWLL
FT                 LRYNAHMNVEICGFIEAVKYLFKYVYKGHDRAALNIIQNVRGDGNVVDEIR
FT                 EHLDARYVCAPEAIHHILGFKLEKKASVTTQQLESSSQTDTTLTAWFKINQ
FT                 KSKDIAESGNIPSTFVDSRQFFYMDMPTHFTFVKKDGWKVRGRGTRQIGRM
FT                 YTVPPYETERYALRILLLNIKGATSFEDLRTVLDENNVPVVYATYVEAAKA
FT                 QGLLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILFNEVHDLNALWDAVKW
FT                 DLSEDFRHAGAGKEEAEALAYFDIESRLQRVGKRFDVTKPSINPPPIDLDT
FT                 VNPAQCASEGNRLLATLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGK
FT                 TYLYITLYNICVGRGLKVACTAWTGIAANLLPLGRTSASLFKLDIRNQCKS
FT                 SLHQRQLKEAQELAENDVFIWDEASMVPKTALDTVDVLLRDLTKIDQPFGG
FT                 KILILGGDFRQILPVVERSSRADQVDACIKRSPLWTEFQILHLISNMRVTS
FT                 GDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVIDPTTSD
FT                 PCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPT
FT                 EFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHS
FT                 LGCRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQ
FT                 GQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIVKSSSNIVTNIVFNEV
FT                 L"
XX
SQ   Sequence 8484 BP; 2476 A; 1919 C; 1648 G; 2441 T; 0 other;
     tcattactta tatataaaaa aatagtgtgg gtctgtccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgacgtcac ccctaaagtc actgagagtt gtgggcgggg ccagtcaccc       120
     ttcgtggcga gacccatcgt tgcgagaccc ttcgtggcga gacccatcgt ggcgagaccc       180
     atcgtggcga gacccatcgt ggcgagaccc atacattttg gcgggaattt aaattttctt       240
     tgaaattttt cggcgggaat tcaaattttc tgtgaaaatt tttggcggta gctcaaattt       300
     tctgaaacat ttttggcggg aattcaaaat ttctctgaaa atttttggcg ggaatttaaa       360
     ttttctttaa aattttttgg cgggaattca aattttctgt gaaaaatttt ggcgggaatt       420
     caaattttct gaaaaatttt tggcgggaat tcaaattttc tctgaaaaat tttggcggga       480
     atttaaattt ccttcaaaat tttttggcgg gaattcaaat tttctgaaaa atttttggcg       540
     ggaattcaaa ttttctctga aaaattttgg cgggaattta aatttccttc aaaatttttt       600
     ggcgggaatt caaattttct ttgaaaattt ttggcgtgaa ttcaaatttt ctgaaacatt       660
     tttggcggga attcaaattt tctctgaaaa tttttggcgg gaattcaaat tttctttaaa       720
     attttttggc gggaattcaa attttctgtg aaaaattttg gcgggaattc aaattttctg       780
     aaaaattttt ggcgggaatt caaattttct ctgaaaattt ttggcgggaa tttaaatttt       840
     ctttaaaatt ttttggcggg aattcaaatt ttctgtgaaa atttttggcg ggaattcaaa       900
     ttttctgaaa aatttttggc gggaattcaa attttctctg aaaatttttg gcgggaattt       960
     aaattttctt tacaattttt tggcgggaat tcaaattttc tgaaaaattt ttggcgggaa      1020
     ttcaaatttt cagtgaaaaa ttatggcggg aaattcaaat ttttagagaa attttgtcgg      1080
     agtagtcaaa tttaactttg tttgacagaa aaaaaaagta tgaaggggaa gatagtttga      1140
     accacagaag gttcacacca aattcccgca cacaaccaat gcgacatacc ggcacatttg      1200
     tttagaattt aataaaccta tagaagagga aaacttcatg caataaactt cgagaatctt      1260
     ctagaaattt cgaaaaactt ctagatatct cggattacgt aacacttgac gacgtcacac      1320
     atgatgagga cattaagtaa acgtcacagg ctgaacccaa tataattttc agaaaattct      1380
     ggaaccttct agaattttgg agaaacttcc agaaaattct gatgacgtca caatcactgg      1440
     cgtaacaaaa aataagtcac agattatgac gtcacatatg atgacaccta tatagtctca      1500
     cattcggaaa aaaataggtg atgacgccaa atatatcagc gtcacagaat gtgacgtcat      1560
     aggctccgcc cattacagta aaagaaactt ctggaatctt ccagaagttg cagaaaaaga      1620
     agagaatgtt ccaataacgt cacaaaagat gacgtcactg ataaagacat cacaggaact      1680
     acccattaat ataatcaaga agattctaca accatctaga aacttctgga tttttcaatg      1740
     tagtgtgcaa aatttaaatt ttgactattt cattgtgcaa tttttaattt atattattac      1800
     aagtttaaac tatattaaat ctgtccttct aaaacccaat tcgtttcaag acccaaaact      1860
     tctagaatct tccaaaaaaa ttctatataa ggagaagaaa attatcattt tctcattatt      1920
     aatcaacaat ggataacgag ctaacaagtc gacccgattc aataatggat acggaaccaa      1980
     caactctacc cgattcagca atggatacca aaccaacaaa cctgcctgat ttcccttcta      2040
     catcccaaga acccgtctct aggaggacac gttccagaac attaaggtaa ggatcttgaa      2100
     tgctcgtgga attttaccaa taagcagttt tagtgacaac tcaaatgctg tatggaagag      2160
     agaacgtcgt tcaagagaaa cttcgcaaga atcagaatca agactcagga tggattggga      2220
     aagaaaaaag gaaaaacgag cttcaatgtc agaagaggaa aaggctgaga tgaaatataa      2280
     aaaaagagta tggatgaaga aaaaaagaaa tgaagtagca aaaacacacg atacgtcatc      2340
     tgttgccaat cccaactacc ttggaagcat gagatgtgtg tgcaagaact gcaatgccag      2400
     attctttcaa ggtatacatt ttttcaaagt ttagtgaact tctacttctt atttccattc      2460
     tgagtttcag attggttttt tttcataact aataacatat actagcatca tacagaaatt      2520
     taatgtttca ggagaggtgt cctcatccaa cgatcatatc aatatgtgtt gctacttcgg      2580
     attaacaacc acacttcaag atcgattctc caactaccca gatgaactac gacatcttct      2640
     cctcgatgat tcttctcacg cccgtaactt ccagaagaac atccgacagt ttaattcatc      2700
     gttcgcaatg gcatcgatgg gtgcacaact tgatgttccg agaggccgcg gcccatactg      2760
     cttcaaaatc cacggtcaag tttaccattt tgcgggacca cttcacccgg atccaggcca      2820
     gagaccagca tttggacaga tctacatcct ggacactgat caagcaacag acgagaggct      2880
     tggaaatcct gccaatgccg attgtgatcc tgctgttatg gctgaattga gcagtcttct      2940
     gttgagaacc aatccatatg cacaggcata caagatgatg gctgaagttg aagaaaaaga      3000
     aaattctgaa gctgcaaagg aaggacgaca tccgggatgc gttcgactga tcttcgatat      3060
     ttcgacaact aaggatccac gacgttataa cttgccacaa gcgaatgaag tcgcagttgt      3120
     ttttgtgggc gaagacgatg acgtgccaac cactcgctct ttggctgttc atccaagagg      3180
     aggaggactt aagacgattc gtgatatcga taggatctgc gatcctctca catatcctgt      3240
     attgtttcca aatggaaccg acggatggca tcctgacttg gaaaagagac catcggagaa      3300
     gaaacaagga aggattactc agaagatgta ctacagttac ctgctcatgg agagatcagg      3360
     agttttcaat ccactgcatc acgggcgtgc cctgtttcaa cagtttgcag tagactcatg      3420
     ggtaaaggta agaatacatg atctcatgtt cacaaaataa tcatgttttt gcagatcgag      3480
     caaaacaggc taaactatca tcgaactcat caagttgatt tgaaagccgc caactacaat      3540
     gcggttcagg attatattgc tggagatact gatgtcccag gaagacgcat cgttcttcca      3600
     tcatcttttc cagggagtcc ccgagcaatg gtccaaaact ttcaagacgc gatggctatt      3660
     gtctcgaagt tcggaaagcc tgatatattt ttaactttca cgtgtaatcc tgcatggaca      3720
     gagatttctg aaaacctcgg tccgcgacaa tctgcatctg atcgtccaga ccttattgcc      3780
     cgtgtcttca agctaaaagt aagttgaaga tctatattta actcatcact ttcttcattg      3840
     tgttccaggt agatgcgctg tttgacgatc ttctaaatcg ggatattctc ggacacgttg      3900
     ccgcatacat ttccgtgttc gaatggcaaa aacgaggtct tcctcatgta cacatgctgt      3960
     taactatggc agagaactca aagccacgaa cctcggagga catcgacaag attgtgcaag      4020
     ctgagattcc aaatcctgac aacgagccag aacttcatcg cattgtgacc accgccatga      4080
     tgcatcgtcc atgtggtgct caaaatcctc actcgccatg catggttgat gggcactgct      4140
     cgaaaaggta tccgaaggat tttcatccta gcaccactct caacgttgat ggatatcccg      4200
     ggtatcgtcg aagggatgat ggacgatatg tggaatatgg cacccaacat ctcgataaca      4260
     ggagagttgt tccatacaac aaatggcttc tgctccgtta caatgctcac atgaatgtcg      4320
     agatttgtgg attcatcgaa gctgtaaaat atctcttcaa atatgtctac aaaggacatg      4380
     accgtgctgc actcaacatc atccaaaatg tacgtggaga tggaaatgtt gttgatgaga      4440
     tccgagagca tctagatgct cgatacgtct gtgctcccga ggcaatccac cacatcttgg      4500
     gattcaaact ggaaaagaag tccgatacag tttattgact cgctgtgcat ctcgaaggat      4560
     tccaaacgat ctactttaga gccagtgtca ccacacaaca actcgaatct tcatcacaaa      4620
     ccgacacgac tctcacagct tggtttaaga tcaaccaaaa gagcaaggat attgcggaga      4680
     gcgggaacat cccttcgaca tttgttgatt cacgccaatt cttctacatg gatatgccaa      4740
     cgcacttcac ctttgtgaaa aaggatggct ggaaggttcg aggaagaggc acaaggcaga      4800
     taggccgaat gtacactgtc ccaccatacg aaaccgagag atacgcactt cgaattcttc      4860
     ttttgaacat caaaggagcg acgtcattcg aagatcttcg tactgttttg gacgagaaca      4920
     atgttccagt ggtatacgca acttatgtgg aagcagcaaa agctcaagga cttctgaatg      4980
     atgacagcga atatttgaag tctttgaaag agtgggctgg atgctcagtg cccgcagctc      5040
     ttcgctcaat gtttgtcgct atcattcttt ttaacgaagt tcacgatctg aacgcacttt      5100
     gggatgccgt gaagtgggat ctttctgagg attttcgcca tgctggagca gggaaagaag      5160
     aggctgaggc acttgcatat tttgatatcg aaagtcgcct tcaaaggtat cttttgagct      5220
     tttttcaaaa gtagattata atatttttcc agggttggaa aaagattcga tgtcaccaaa      5280
     ccatctatca atccgccacc aatcgatctc gacacagtca accctgctca atgtgcatca      5340
     gaaggcaata ggctccttgc gacactcaat gatcaacaga aacgtgcagc tgaccagatc      5400
     cttgctgcat tagatgatgc ctcgctaccc cgtcttttct atttggatgg gcctggaggg      5460
     agcggaaaga cttatctcta catcactctg tacaacatct gtgttggaag aggactgaag      5520
     gtaaactttc aaccaaacat actaaagtta tttcaatact gcatattttc aggtagcgtg      5580
     tacggcgtgg acaggaattg cagccaattt actcccactc ggtcgaacat ccgcttccct      5640
     tttcaagctt gatattagaa atcaatgcaa gtcttctctt catcagaggc aattgaaaga      5700
     agcacaagag ctagcggaga acgacgtttt catttgggat gaagcatcaa tggttcccaa      5760
     ggtattagag tgattctgat cgtactaatc aaatcattca ttcaactttc agacagccct      5820
     cgacacggtc gatgtactgc ttagggatct cacaaagatc gatcagccat ttggtgggaa      5880
     gatcctgatc ctcggaggag actttcgcca aatcctacct gtggtggaga gaagctctag      5940
     agctgatcaa gtagacgcat gcatcaaaag atcaccacta tggacagagt ttcaaatttt      6000
     gcatctcatc tcaaatatga gagtaacatc tggagactcg gattggatcc aattcctcct      6060
     caatgttggc gatggatctg caaatgactc tgattcaaag gttacactcc cactctctgt      6120
     catgtgcgat cacaacatcg tcgaggaagt gttcggagca gttatcgatc caaccacgtc      6180
     tgatccatgt gacaacgtca tccttacacc taagaacgtc gacgttgctc aactgaatga      6240
     cgatgttcac aatcgaatgg ttggcgagga aagaatctat ctgtcacgag atgaagtgat      6300
     cgtggaacat caagcggata ctatgcacta tcccaccgag tttctcaaca agatgtcccc      6360
     atcatctctt cctccccata ttctcaagct gaagaaaggc tcagtgatca ttctgctcag      6420
     gaatctcgat gtttccgctg gcctttgcaa tggttcccgt ttcattgtcg aaacattggc      6480
     cagtcactca cttggatgtc gctttgcaac tggcgagagg aaaggacatt tcacaatcat      6540
     tccaagaatc gattgctatg atgataagaa catctctttc caactcaggc gcacacagtt      6600
     cccagttcgc ttatcatttg cattatcgat caacaaggcc caaggacaat ccttttctaa      6660
     aatcggtctc tggattccca ccgatgtttt cactcatgga caactatatg ttgctctatc      6720
     aagagttcgt accaaagaag gtcttattgt aaaatccagt tctaatattg tcaccaatat      6780
     cgtttttaat gaagttcttt gaataaagct tattattctt ctctgctatc tcgctagaca      6840
     actcagctct cttctgaggt ctcactcgac aactcatctc ttctctgcta tctcgctaga      6900
     caactcagct ctcttctgag gtctcactcg acaactcatc tcttctctgc tatctcgcta      6960
     gacaactcag ctctcttctg aggtctcgct cgacaactca tctcttctct gctatctcgc      7020
     tagacaactc agctctcttc tgaggtctcg ctcgacaact cagctcttct ctgctatctc      7080
     gctagacaac tcagctctct tctgaggtct cactcgacaa ctcatctctt ctctgctatc      7140
     tcgctagaca actcagctct cttctgaggt ctcgcccgac aactcatctc ttctctgcta      7200
     tctcgctaga caactcagct ctcttctgag gtctcgctcg acaactcatc tcttctctgc      7260
     tatctcgcta gacaactcag ctctcttctg aggtctcgct cgacaactca gctcttctct      7320
     gctatctcgc tagacaactc agctctcttc tgaggtctcg ctcgacaact catctcttct      7380
     ctgctatctc gctagacaac tcagctctct tctgaggtct cgctcgacaa ctcatctctt      7440
     ctctgctatc tcgctagaca actcagctct cttctgaggt ctcactcgac aactcatctc      7500
     ttctctgcta tctcgctaga caactcagct ctcttctgag gtctcgctcg acaactcatc      7560
     tcttctctgc tatctcgcta gacaactcag ctctcttctg aggtctcact cgacaactca      7620
     tctcttctct gctatctcgc tagacaactc agctcttttc tgctatctcg ctagacaact      7680
     cagctctctt ctgaggtctc actcgacaac tcatctcttc tctgctatct cgctagacaa      7740
     ctcagctctc ttctgaggtc tcgctcgaca actcatctct tctctgctat ctcgctagac      7800
     aactcagctc tcttctgagg tctcgctcga caactccagc cttctcactc gcccccatat      7860
     gtaggagtat ggggggaggg agtattatta taaccacaga aacacaacaa tgtgccacat      7920
     aagagacagg agatagtgct cgcactaccc ctgaatcacc aaccctctca gaagcacctc      7980
     tgctcttatc tgggtctcgc tagacatctc cagtagtttg accattctca gcaacacttt      8040
     tgctatttta gaattttttt gccctcgcgg ggatcgaacc aaaaggtccg cgcgccaatg      8100
     acgcgcgcgc taccagctgt gccatgctgg aagcgattga acttcgacca ataacaatat      8160
     acaacatttc tttatttgtc aaagtgaaat agttttgaac aaacactatt caaaaaagta      8220
     attttaaatt gaaattatat caaattcacg atttgttccc aaatatttaa aactgaaact      8280
     caataagaga agatctcata ttctcactga taatccgaaa catgacattt gtttcaatgc      8340
     tgttttcaac ctcaagttgt aaaattcaaa aaccaagctg aaaatatgtt ttaaaaatct      8400
     agaaactaca ataattttta tgtgaatttt tggaaaaatc tcaagccaga cggagcacgc      8460
     gccttggcgc gtgcgaacgg ctgg                                             8484
//
ID   RCD1        repbase; DNA   ; CEL   ; 359 BP.
XX
AC   X61258;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   C.elegans RcD1 repetitive DNA.
XX
KW   Repetitive DNA; RCD1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-359
RA   La Volpe A.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (16-AUG-1991)A. La Volpe, CNR
RL   International Institute of Genetics and Biophysic, Via Marconi
RL   10, 80125 Naples, ITALY.
XX
RN   [2]
RP   1-359
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence
RT   in Caenorhabditis elegans.";
RL   Unpublished.
XX
RN   [3]
RP   1-359
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226, 159-168 (1992).
XX
DR   GenBank; X61258; Positions       1     359.
XX
SQ   Sequence 359 BP; 90 A; 120 C; 89 G; 60 T; 0 other;
     gggtctcacc acgaagggtc tcaccacgaa gggtctcacc acgattggtc tcaccacgac        60
     gggtctcacc acgaaaggtc tcaccacgat tggtctcacc acgaagggtc tcaccacgaa       120
     gggtctcacc acgatgggtc tcaccacgaa gggtctcacc acgaagggta tcaccacgat       180
     gggtctcacc acgaagggtc tcaccacgat tggtctcacc acgaagggtc tcaccacgaa       240
     aggtctcacc acgattggtc tcaccacgaa gggtctcacc acgaagggtc tcaccacgat       300
     gggtctcacc acgaagggtc tcaccacgaa gggtctcacc acgatgggtc tcaccacaa        359
//
ID   NPAL5A_CE   repbase; DNA   ; CEL   ; 237 BP.
XX
AC   .
XX
DT   31-AUG-1999 (Rel. 4.07, Created)
DT   31-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   NPAL5A_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; CELE32A;
KW   MITE; NPAL5A_CE; Non-autonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Belknap R.W.;
RT   "NPAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RA   Jurka J.;
RT   "NPAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [3]
RP   1-237
RA   V V., Jurka J.;
RT   "NPAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [3] (Consensus)
XX
CC   The final version of the consensus sequence [3] have been
CC   determined
CC   based on identification of 5 bp-long target-site duplications.
CC   NPAL5A_CE has perfect 9 bp-long terminal inverted repeats and it
CC   forms non-perfect palindrome.
XX
SQ   Sequence 237 BP; 72 A; 52 C; 53 G; 60 T; 0 other;
     cacggcccgg caagtggtac atccatgcaa atgcgctcta ctgataattt gagtgtagac        60
     caggtttggg cgcgtgataa cgaaaaaagc tttggtccaa aaaatttaga atttaatttc       120
     ggacattttt tatatgcatc acaaaaaaac tggaccaacc gtttttgaga tacacgcgcc       180
     caaacgtcca ggtatacggt agacaaattg cgtacaggta ccacttctcg ggccgtg          237
//
