ID   Harbinger-N1_XT repbase; DNA   ; VRT   ; 341 BP.
XX
AC   .
XX
DT   30-SEP-2005 (Rel. 10.09, Created)
DT   30-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   A nonautonomous family of Harbinger transposons - a consensus.
XX
KW   Harbinger; DNA transposon; Interspersed Repeat; Non-autonomous.
XX
OS   Xenopus tropicalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Silurana.
XX
RN   [1]
RP   1-341
RA   Kapitonov V.V., Jurka J.;
RT   "Harbinger-N1_XR, a family of nonautonomous Harbinger DNA
RT   transposons from frog.";
RL   Repbase Reports 5(9), 254-254 (2005).
XX
CC   [1] (Consensus)
XX
CC   The genome contains several thousand copies of Harbinger-N1_XT
CC   elements. They are characterized by 15-bp TIRs and TWA targe-site
CC   duplications.
XX
SQ   Sequence 341 BP; 78 A; 88 C; 93 G; 82 T; 0 other;
     aggtggccat acacgcaccg ataatatcgt acgaaacctc gtttcgtacg atattcggtg        60
     cgtgtatggt atgtcggcga gtcgaccgat atcgcaggaa gctgctgata tcggccgact       120
     cgccgatcgg accagtttga aaattttgat cgggcgccat agaaggcgcc tgaccaaaat       180
     ctcccttcag cgctgaatcg gcagaaggag gtagaaatcc tattgtttct acctccttac       240
     ctgccgattc agccctgaat ggtgtgtggc ggatctgacg atgtttcgtg cgaccgatgg       300
     tcgcacgaaa catcgtcaga tcgccacgtg tatggccagc t                           341
//
ID   XMTX1_LTR   repbase; DNA   ; VRT   ; 2385 BP.
XX
AC   AF130854;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   XMTX1_LTR is a long terminal repeat from the TX-1 LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Interspersed Repeat; XMTX1_I; XMTX1_LTR;
KW   XMTX1_LTR..
XX
OS   Xiphophorus maculatus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Cyprinodontiformes; Poeciliidae; Xiphophorus.
XX
RN   [1]
RP   1-2385
RA   Schartl M., Hornung U., Gutbrod H., Volff N.J., Wittbrod J.;
RT   "Melanoma loss-of-function mutants in Xiphophorus caused by
RT   ONC-Xmrk deletion and by insertion of a transposable element.";
RL   Genetics 153(3), 1385-1394 (1999).
XX
DR   GenBank; AF130854; Positions       1    2385.
XX
SQ   Sequence 2385 BP; 647 A; 517 C; 447 G; 774 T; 0 other;
     tgttgttgcg caacaccccc cccctccttt ctgtctctac tctctcactc tctgctcctc        60
     ttctgagagg ggagatgtgc taccagctct ccatctaacg ggttaattga gtttcctaaa       120
     tctgccggga tttaccctgt ccagaactga agtaaactct gtttaagctg gtttcgagaa       180
     acgattcacc tgatttttaa cggcctacat ccaggtgtct cacccttctt ccctctgtga       240
     attagccaga ctgagcagcc tacagccaac tagtttcaca gagcacacct gttaacggtc       300
     gctcgttctc tatttcacaa cttgcatttg ttattgaacc aggtaggttt tagtgactcg       360
     ggcgagtccc aaggatgttg ttttaaattt gggctaccag caacctataa aacattttcc       420
     acctcttcct ctccagaatc aaacatcaca gctattttac aaccatcaaa gaactttaag       480
     gtgactcatt aactgaatgt ccacaacatc ttttagattt tctttatgct aaatatttta       540
     ttagtaaggc atttttgcaa gggtcagtac agcttaattc agtagcagaa atatcaaata       600
     agtaaaatca atcatctagt ctgtctttcc ctactgctga cactgaaaac taaaaaaaaa       660
     gggaaccttt gagagagacg gacggagttt ggtgtttcga accccagacc tggcctgatg       720
     atgaagaagg tgttgcagca ggaggaagac gccgatcgat gaaggccagg atctccgcag       780
     gtctgatgat gaagaaggtg ttgcagcagg aggaagacgc cgatcgatga aggccaggat       840
     ctccgcaggt cttgatgatg aagaaggtgt tgcagcagga ggaagacgcc gatcgatgaa       900
     ggccaggatc tccgcaggtc ttgatgatga agaaggtgtt gcagcaggag gaagacgccg       960
     atcgatgaag gccaggatct ctgtaggtct gatgagcctc ctctccgcat ggatggtgag      1020
     gtcacacagg acttggtgct ggcaggaagg aaggcaccag ttcttcttct ttgtctttgc      1080
     ctttgtcttc atctttgtct ttggggtctg aacccagccg atgagagaag tgcgatttga      1140
     agccacaggt tgtagggctg acgggttggt ccccatggcc ggacagtctt cggctccgtg      1200
     gccccggctc ttcttcagct gcagagttct ttgtccatct cgatcttggc tcgaagctgc      1260
     ccggaggatc caacgaacgg ttcctctttt cgactcacct tttatagggt ttctgactgc      1320
     ttaagacaag atgatctcat atccatcact gtcttacaga catttcctga tgtctgtgct      1380
     aatgtctcag agttgctcaa cctcctatgt ccattgcctg cacaaccttt cacctactct      1440
     ctaaataagg cgttgatcat ctctgctctc ctgttagttc cttgcctttc agctttcacc      1500
     tactctctac ctccaacata tcagtgatgt ttaattgcag ttacaccttt tacaccattt      1560
     caagttcaat gtcaaaatca catttatatc acatttattt tctttagctt ctctgattta      1620
     gcattcattt ataattttat aaccataact tatatcacat ttattttctt cagcttctct      1680
     gatttatcat taatttatga ttttataacc ataacttatt aattatactt attataatcc      1740
     taatgtgagt tattacagat gtttttctga aaagaaacca aggataatac atgattctaa      1800
     ttatttgatg ccaaagttac agttacttgt ttttcttgta actgttccca caaatgtaag      1860
     tgtaagtatt attacaagta aaccaatatt aatataagta ttttactttg aatcttatcc      1920
     aattactcaa aaatgtttag atttcattct ttaaaacttt acctttgaaa taaagaatag      1980
     tctcagctat ttttataaat ctgcaggctg gaaacttact tcctcttttt ccaggaaacc      2040
     tgcttttcct gtttaatgac tctctctgac tgactatgat ttcttatgat tagatagaaa      2100
     aaagtaaaat taaagcaaag tttgcatgag acaaaaacaa cacacacaac cagatttatt      2160
     ttattgacac ttaagtctac tgttgggcct agatatcact tgagtgattc attttaaaga      2220
     taactttatt tattattact gttaaactaa ctttattgac acttaagtct actgttgggc      2280
     cttgatgtca cttgagtgat tcattttaaa gataacttta tttattatta ctgttaaact      2340
     aaaatctcca gcatggggaa gtgggatgag ctctgacacc ctcca                      2385
//
ID   ILRC2_GL    repbase; DNA   ; VRT   ; 183 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Geophaps lophotes inverted LINE repeat cluster.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; ILRC; ILRC2_GL;
KW   inverted LINE repeat cluster.
XX
OS   Geophaps lophotes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Columbiformes; Columbidae;
OC   Geophaps.
XX
RN   [1]
RA   Smith M.L., Burgoyne A.L.;
RT   "Species identity: conserved inverted LINE repeat clusters (ILRC)
RT   in the vertebrate genome as indicators of population
RT   boundaries.";
RL   Gene 271(2), 273-283 (2001).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of G. lophotes LINE repeat cluster.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 97%.
XX
SQ   Sequence 183 BP; 51 A; 44 C; 44 G; 44 T; 0 other;
     gcccagttcc ctcagcctgt ccccataaaa cttctggtcc agactcttca ccagcctcat        60
     catgatcata aatgataacg tgatgatgtt aataaatagg aagaggcttg ttggaaactc       120
     tgtaacatga gaaaaggctc tgcttctgct aagcagcctg aggacaggct gagggagctg       180
     ggc                                                                     183
//
ID   pTvm1       repbase; DNA   ; VRT   ; 310 BP.
XX
AC   M28423;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   T.vulgaris satellite DNA pTvm1 repeat.
XX
KW   SAT; Satellite; Simple Repeat; pTvm1; Repeat region;
KW   satellite repeat.
XX
OS   Triturus vulgaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Caudata; Salamandroidea; Salamandridae;
OC   Triturus.
XX
RN   [1]
RA   Barsacchi-Pilone G., Batistoni R., Andronico F., Vitelli L.,
RA   Nardi I.;
RT   "Heterochromatic DNA in Triturus (Amphibia, Urodela). I. A
RT   satellite DNA component of the pericentric C-bands.";
RL   Chromosoma 93(5), 435-446 (1986).
XX
DR   Genbank; M28423; Positions       1     310.
XX
SQ   Sequence 310 BP; 98 A; 60 C; 48 G; 104 T; 0 other;
     agcttccatt ttgacccgtt tcaggcacag aattggcttt aaacacactt attttagttc        60
     acaaagtcat aattcacatc caacagtaat ttagagtcaa aagattaaat gttaaaattt       120
     catcattata gaccattttg ggatcgttcg acaggtccgg agtcatcgtt tttcatccga       180
     aaatggattt tttggactgt gtcaaaaatg attcaaaatg tcaattggat cgtgcctcat       240
     gttgaaaacc actttttaaa ccctcacagt gaccaaaatt gccattttta cagagttttg       300
     cttactcaaa                                                              310
//
ID   REM2_XL     repbase; DNA   ; VRT   ; 493 BP.
XX
AC   X00679;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Xenopus laevis REM 2 sequence (repetitive Eco RI Monomers).
XX
KW   Inverted repeat; REM2_XL; Repetitive sequence.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-493
RA   Hummel S., Meyerhof W., Korge E., Knochel W.;
RT   "Characterization of highly and moderately repetitive 500 bp Eco
RT   RI fragments from Xenopus laevis DNA.";
RL   Nucleic Acids Res 12(12), 4921-4938 (1984).
XX
DR   GenBank; X00679; Positions       1     493.
XX
SQ   Sequence 493 BP; 145 A; 90 C; 103 G; 155 T; 0 other;
     gaattctaaa tgaatcagat gaaaattgag cataggactg gccagatatg ggatgacttt        60
     gacgtagttg gccagcttaa atatattgca atatatggac agacaatccc tgttttgttt       120
     aaagggtaag gcatttttca gtagcagtat gcacaaaatg tctctgtctt aaatatattg       180
     ataatgggtt gagtgcagag gaatcttgta tttgcctata tgtattttgt ggtcacactc       240
     tcattgcacc cccgcctaat gattttaaaa actagtggtg agcacaactt tcccctgttt       300
     gttatagtta tacaggagca gtgaccagct ccatgttgta gctcccaccc cctccaacta       360
     tagtcaggtg atcccactgg tgtctaataa aagggcagcc aagtttggga gttttacttt       420
     gaaagcagct agtaagttgc aggtaaaacg tattcgtccc ttttataaaa tgtataatta       480
     agccatagaa ttc                                                          493
//
ID   EAVHP_LTR   repbase; DNA   ; VRT   ; 287 BP.
XX
AC   AJ238124;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   EAVHP_LTR is a long terminal repeat from the EAV-HP endogenous
DE   retrovirus.
XX
KW   LTR Retrotransposon; Interspersed Repeat; EAVHP_I; EAVHP_LTR; LTR;
KW   endogenous retrovirus.
XX
OS   Avian endogenous retrovirus EAV-HP
OC   Viruses; Retroid viruses; Retroviridae.
XX
RN   [1]
RP   1-287
RA   Sacco A.M., Flannery M.D., Howes K., Venugopal K.;
RT   "Avian endogenous retrovirus EAV-HP shares regions of identity
RT   with avian leukosis virus subgroup J and the avian
RT   retrotransposon ART-CH.";
RL   J. Virol 74(3), 1296-1306 (2000).
XX
RN   [2]
RP   1-287
RA   Sacco A.M.;
RT   "EAVHP_LTR.";
RL   Direct Submission to Genbank (09-APR-1999)Sacco M.A., Immunology
RL   and Pathology, Institute for Animal Health, Compton, Near
RL   Newbury, Berkshire, RG20 7NN, UNITED KINGDOM.
XX
DR   GenBank; AJ238124; Positions      79     365.
XX
SQ   Sequence 287 BP; 71 A; 67 C; 84 G; 65 T; 0 other;
     tgtgttgtag gcgtagcgag ggaaacgagg tgtgacgcgt gcaggttcct atgccacctg        60
     tgtgttatgc cacctgtgtg tgccaagtgt aacttcgtga ttggaggaaa cacttgtatt       120
     taaacacgta gcctatagca ataaacgcca tttgcctcac ttactcctgg ggtctgggtg       180
     agcatctggc cccgacctgg taaagggtcg gtttcgccca gcagtaagcc ctacatgtgg       240
     acagaggacg aacaccggaa gagcgaacgg agactacatg caacaag                     287
//
ID   CR1AVI      repbase; DNA   ; VRT   ; 721 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Avian CR1-like element - consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   CR1 repetitive element; CR1AVI; avr4 gene; avr5 gene.
XX
OS   Neognathae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves.
XX
RN   [1]
RA   Wallen J.M., Keinanen A.R., Kulomaa S.M.;
RT   "Two chicken repeat one (CR1) elements lacking a silencer-like
RT   region upstream of the chicken avidin-related genes Avr4 and
RT   Avr5.";
RL   Biochim. Biophys. Acta 1308(3), 193-196 (1996).
XX
RN   [2]
RA   Murray M., Meehan D., Pokras M., Alcivar-Warren A.;
RT   "Microsatellites in the Common Loon (Gavia immer) Genome.";
RL   Unpublished.
XX
RN   [3]
RA   Li X., Wistow J.G., Piatigorsky J.;
RT   "Linkage and expression of the argininosuccinate
RT   lyase/delta-crystallin genes of the duck: insertion of a CR1
RT   element in the intergenic spacer.";
RL   Biochim. Biophys. Acta 1261(1), 25-34 (1995).
XX
RN   [4]
RA   Wistow J.G., Piatigorsky J.;
RT   "Gene conversion and splice-site slippage in the
RT   argininosuccinate lyases/delta-crystallins of the duck lens:
RT   members of an enzyme superfamily.";
RL   Gene 96(2), 263-270 (1990).
XX
RN   [5]
RA   Kohany O., Jurka J.;
RT   "Consensus of avian CR1-like repeat.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [5] (Consensus)
XX
CC   Average similarity to consensus 87%.
XX
SQ   Sequence 721 BP; 167 A; 166 C; 241 G; 147 T; 0 other;
     gcaccgttca gcaagtgtgc agacgacacc aagctgagtg gtgcatttga catgctagag        60
     ggaagggatg ctatccagat ggagctggac aggcttgaga aatggggccg tgcctgcctc       120
     ctgaacttca acaaggccaa gtgcaaggtc tgccatctgg gttggagcaa tcccgagcac       180
     agatatgggt gggacagtga atggcttgag agccgccctg aggagaagga ttcgggcatg       240
     ttggatgacg aaagattcaa cgtgagcaag caatgtgcgt ttgctgccca gaaggccaac       300
     tgtatcgcgg gttgcaccaa gagaagggtg accagcaggt tgaggctgca ggttctgctc       360
     ctctgctctg ctctcgtaag acccaacgtg gagtactgtg tccaggtcag gggaccccaa       420
     cactgggagg acatggagct gttggagcga gttcagagga gggccacaaa gatggtcaga       480
     gggctggagc agctcccctg tgaggacagg ctgagagagt tgtgactctt cagccaagag       540
     aagaggaggt tccgggggga ttgtgaatgt cctctccctg gaggcattca aggcctggct       600
     ggatggggct gtgagcaacc tggtctcatg ggaggcgccc ctgcctgtag cacggggttg       660
     gaactgggcg atcttcaaag tcccttccaa cccaaaccat tatgggattc tatgattctg       720
     t                                                                       721
//
ID   RCSAT1      repbase; DNA   ; VRT   ; 361 BP.
XX
AC   M28442;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Satellite 1 DNA; repeat region.
XX
KW   SAT; Satellite; Simple Repeat; RCSAT1;
KW   satellite 1 repetitive element; satellite DNA.
XX
OS   Rana catesbeiana
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana;
OC   Aquarana.
XX
RN   [1]
RP   1-361
RA   Wu Z., Murphy C., Gall G.J.;
RT   "A transcribed satellite DNA from the bullfrog Rana
RT   catesbeiana.";
RL   Chromosoma 93, 291-297 (1986).
XX
DR   GenBank; M28442; Positions       1     361.
XX
SQ   Sequence 361 BP; 89 A; 106 C; 77 G; 84 T; 5 other;
     atcgatcgat catntcactt acaaaanact aaacgcataa ctgcaggttc gcagagtcag        60
     gctgatccct gngatcgcta acactttttt tggtagcgtt ttggtgaact ggcaagcacc       120
     agccccaggn agcgtcaggt tagtgncagt agcgctaaca cccatgcacg caccatacac       180
     ctcccttagt ggtatagtat ctgaactgat caatatctga tctgatccga tcagatctat       240
     actggcgtcc ccagcagttt agggttccca aaaacgcagt gttagtggga tcaacccaga       300
     tacctgctag cacctgcctt ttgcccctcc gccggcccag cccagcccac ccaagtgcag       360
     t                                                                       361
//
ID   SAT_LM      repbase; DNA   ; VRT   ; 871 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Lepomis macrochirus satellite tandem repeat.
XX
KW   SAT; Satellite; Simple Repeat; SAT_LM; satellite sequence;
KW   tandem repeat.
XX
OS   Lepomis macrochirus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Percoidei; Centrarchidae; Lepomis.
XX
RN   [1]
RA   Kato M., Kawamura Y., Ito M., Hokabe S.;
RT   "A long repetitive unit sequence of Lepomis macrochirus satellite
RT   DNA.";
RL   Unpublished.
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of Lepomis macrochirus satellite repeat.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 98%.
XX
SQ   Sequence 871 BP; 263 A; 159 C; 188 G; 260 T; 1 other;
     tcattggagt ctaagtgacc actaatcaac ttgtaatggg atgcatcaat ttacaatgac        60
     ggttgtccat caaatacaaa tagtgctatt gttcacttag tattgccaag atcattgaaa       120
     cctgaaagga aaagaaggtg gagttgggta ggattggctt caaactacat ttaagatggg       180
     cagatctgtg caagaagcac cacttcttct tccacctgga aagacaacac agaaaatgct       240
     agaaagaaac atctggacta cggagaagag aggaagattg ctcactgcaa gtactggccc       300
     aaattgagct tttgtttgaa tacggtaagt gctactggtt gaggaggttt tacatgccaa       360
     aagctacaaa ctgtaactga ggggagatgc ttttggaatc acgttcagat cacctcaaat       420
     ggagacactg atgattcttg tgttcataag tgcttctctt tggggttgtc ttggttgtga       480
     gttgttcaaa agacatatca ctttcaattt cacatcattt taaccataac catgactttg       540
     tcaccaacat cacccaaaca caagcactga cttgagctct gaattcagta agtgcttctt       600
     gttggggtar tgttgctgac ctctgaagtc ccaggatccc tttaaggaat atattagaag       660
     aatgattcta gatccctaaa tatagatgac aatttttgga tacatgaaat gattcttgct       720
     ttcacacaag ctgtctttgg gtcttgttgc agaaagtgcc ttttggaata gaaattcagt       780
     gctaactctg cttctttgta ttgctttaaa gtactcctga tggagttgca atggcaggcc       840
     accatgtgta aatgagttgc atcaagaaaa g                                      871
//
ID   GGLTR10C2_LTR repbase; DNA   ; VRT   ; 364 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV2 Endogenous Retrovirus from chicken.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; GGLTR10B_LTR;
KW   GGLTR10C2_LTR; LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-364
RA   Smit A.F.;
RT   "GGLTR10C2_LTR - ERV2 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000020, GG000059, GG000012 LTRs of GGERVK10 or derived seqs bp
CC   204-291 matches the core of GGLTR1 (the LTR of GGERVK1); 1-3%
CC   div.
XX
SQ   Sequence 364 BP; 107 A; 65 C; 108 G; 84 T; 0 other;
     tgtagtaggc gtcttgcggg ggcacgggat gtacgggaca ggcctctccc taagcataga        60
     gagacagtgc tatcgtgctg accttgatgc agagaaaaca ggagaagaag aaggatgaga       120
     aaagaatgtg gaaacggcca aataaggcac aatgttatct ggtgtgaacc aatcagagtg       180
     ggacatgaca gcacggttat gtaggtaaaa atgtatataa gctgtgttta gtagtgaata       240
     aacgccattt tgctgctcat catattggtg tgcgtctgca gtcatttggc cctgatcagg       300
     ctattggtca gtgcgcgcag agggctaaca caggtggcta acatcgttgt tgcagaaagc       360
     aaca                                                                    364
//
ID   LINE2_NT1   repbase; DNA   ; VRT   ; 661 BP.
XX
AC   .
XX
DT   28-MAR-2002 (Rel. 7.02, Created)
DT   28-MAR-2002 (Rel. 7.02, Last updated, Version 1)
XX
DE   Natrix tessellata non-LTR retrotransposon LINE2 reverse
DE   transcriptase pseudogene - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; LINE;
KW   LINE2_NT1; retrotransposon.
XX
OS   Natrix tessellata
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Colubridae; Natricinae; Natrix.
XX
RN   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol 18(12), 2213-2224 (2001).
XX
RN   [2]
RP   1-661
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_NT1: non-LTR retrotransposon LINE2 reverse transcriptase
RT   pseudogene from Natrix tessellata.";
RL   Direct Submission to Repbase Update (12-MAR-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 661 BP; 116 A; 194 C; 198 G; 141 T; 12 other;
     gacctctcag crgcttttga taccatcgac catggtatcc tattgcaccg gctggagggg        60
     atgggagtcg gaggcaccgt tttgcggtgg ttcggctcct acctctccga ccggacgcaa       120
     tgtgtgttga caggggggca gaggtcgacc ctgaggccac tcacttgtgg ggtgccacag       180
     gggtcggtcc tctcgcctct cctgttcaac rcatatgtga agcctctggg tgagatcatc       240
     cgtggktttg gggttaarta ccatctgtac gctgatgata ctcagctgta catctcaacc       300
     ccaaaccacc ccaacgaggc tgtcgaagtg atgtcccggt gtttggaagc cgtcggggtc       360
     tggatggggg acaacagact caaactcaac ccctccaaga ctgagtggct gtggytaccg       420
     gcnccccggt tcagccagct aactccatcg ctggccatag ggggtgaaca aytcccccct       480
     gtggagcggg cgcgcaattt gggcgtcctc ctagatgccc ggctgtcwat ggatgaccat       540
     gtggcaagcc gtggcaaggg ggcgttccac caggttcgcc tggtgcgcca attgcgcccc       600
     ctactggacc gggatgccct rcgcacggtc actcatgcrc tggtgacgtm wcgcctggac       660
     t                                                                       661
//
ID   CR1_GD      repbase; DNA   ; VRT   ; 1985 BP.
XX
AC   X14729;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Chicken CR1 repetitive sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   CR1 repetitive sequence; CR1_GD; GDCR1.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-1985
RA   Philipsen N.J., De Vries E.J., Samallo J., Van Dijk C.,
RA   Arnberg C.A., Ab G.;
RT   "Characterization of a polymorphism in the 3' part of the chicken
RT   vitellogenin gene.";
RL   J. Mol. Evol 28, 185-190 (1989).
XX
DR   GenBank; X14729; Positions       1    1985.
XX
SQ   Sequence 1985 BP; 593 A; 395 C; 441 G; 556 T; 0 other;
     ctgcagagtc cttctctctg tttcttaata ggatatccaa gaatccttca gcaataatct        60
     attcttgcag caactgtgtg ttggcaaatg ggcctgtgag cacacatggt ctgactcagc       120
     agtgtatctg caagaaaaaa aaaagttttc agcttctgtc cacgtttgaa aggctgtact       180
     cgaaaaatag gaaacagaaa tgtaagaaaa ccagtattat catactgcat ctatcaccta       240
     ctcggaaaac agcgatcaca cagaagcttc agaatagtag tcagaactac taagtactta       300
     cttagctagc caggcacagc atgatttaaa ggctgcaatg gagctaaagg taccacaaca       360
     tcatgggagt ttggcattgg actgtgagat acatgtgagt tcttagcaaa gaaggagagc       420
     atttatatgt ttgtgggttg tcatactgga actagatgat ctttggggtt ccttccaacc       480
     caagccattc tatgatatgc catgatactg gaaagcacat acatagcaaa aatctgttcc       540
     acaatgttgt tatgtttgat tgttttaaat ttgaaatgtt tttttttact gttcctttcc       600
     atgaagattc aagttccttt atggatggca gggaaaacat gtggaatctg tggaaaatat       660
     gatgcagaat gcgaacagga gtatcggatg cccaatggat atctagctaa aaatgccgtg       720
     agctttggtc attcttggat cttggaagaa gcgccctgta gaggaggtag gcaaatagca       780
     ctttccagcc aacatttgat ccaccaagaa atcaggtggg gattagtaat tactgtggct       840
     caccacctga gttttgaacc aaggcaacct gtcaagcatt tcagcacaca agcagctcca       900
     gggaattaat tacatagttg aaaggaagga aagaaaaggg gctatatttt aagtgcttca       960
     gtagattacg atcttagagt gtgctccatt ctcagctgag cttatggtat aacagcatcc      1020
     cacggaggag ggaggagaac aagcgcactg cctctgtgaa cctgatggga aggacttact      1080
     cgttactcga tcacacagaa gcttcagaat agtagtcaga actactaagt acttacttag      1140
     ctagccaggc acagcatgat ttaaaggctg caatggagct aaaggtacca caacatcatg      1200
     ggagtttggc attggactgt gagatacatg tgagttctta gcaaagaagg agagcattta      1260
     tatgtttgtg cgttgccata ctggaactag atgatctttg gggttccttc caacccaagc      1320
     cattctatga tatgccatga tactggaaag cacatacata gcaaaatctg ttccacaatg      1380
     tttttatgtt tgattgtttt aaatttgaaa tgtttttttt actgttcccc acctgagttt      1440
     tgaaccaggg caacctgttg agcattcgag cacacaagca gctccaggga attaatttac      1500
     atagttgaaa ggaaggaaag aaaaggggct atattttaag tgcttcagta gattacgatc      1560
     ttagagtgtg ctccattctc agctgagctt atggtataac agcatcccac ggaggaggga      1620
     ggagaacaag cgaactgcct ctgtgaacct gatgggaagg acttactcgt taccctggag      1680
     atgctttcat gtgtccagct gcatactaac tgtcattctt ctatgtgtct ttgtcatgaa      1740
     tacctggcat cagacttgct ttagatatat gtgcagtaca caggcgtgca cacaacaaaa      1800
     ttcacaccat tgctagttac cgcactatgc gttcccctcc aacttatggt gaaaatgact      1860
     gacattctga gaataaagct tatatgtggc tcatttagcc cctcacacac ttgtaacttg      1920
     tcctgggaat ccaaaacgag acaagtatta ccagctggca gcagtgatcc ttgctctctc      1980
     tgcag                                                                  1985
//
ID   Mariner1_GG repbase; DNA   ; VRT   ; 1330 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner DNA transposon from chicken.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Galluhop;
KW   Mariner1_GG.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-1330
RA   Smit A.F.;
RT   "Mariner1_GG - Mariner DNA transposon from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000016, GG000051 TA dups ORF from pos 136-1221 encodes protein
CC   43% identical (59% similar) to a mariner transposase found in the
CC   lacewing (gi|600833|gb|AAC46945); 17% subst.
XX
SQ   Sequence 1330 BP; 345 A; 314 C; 364 G; 306 T; 1 other;
     cgagggctgc tccgaaagta atgcctccta ttttattatg ttggcccacg acgtcagagg        60
     cggatgttgg tggtatggca gtagaggctg aaccttccca ccaatattcc gttacatttt       120
     gttgccgtgc gacagatggc agcagagggg cagtctgaca aaatggcgtc tgacatggaa       180
     gtgcgtatga agcaaaggtg tgkcactgaa ttcctccatg cggaaaaaat ggcacccact       240
     gacattcatc gacgcttgct gaacgtttat ggagaccaaa cagtggatgt gagcacagtg       300
     aggcggtggg tggtgcgttt cagcagtggc gacagcgacg tgaaagacaa gccacgttcc       360
     ggacggccat gcacagctgt cacaccacga aatgaagagc gtctcgatca gctcatccgc       420
     gcgaatcggc ggattacgac cagggaactg tgtacggagc tgaatatcgg cttcaatgca       480
     ttggaaacga tggtggcaac gttggaatat cgcaaagttt gcgccaggtg ggtcccacga       540
     atgctcacac aggaacagaa agaacaccgt atgcaagttt gtcaggacct attgaaccaa       600
     tacgaggctg aaggtgacag tttcctggat cgcatcatta ccggtgacga gacgtggtgt       660
     caccactacg agccggagtc aaaacagcag tccatggagt ggcgacatgt gaattcccca       720
     tcgaagaaaa agttcaagac gcagccctca gcgggtaaag tgatgtgcac tgtcttttgg       780
     gataggaaag gggtgatcct tctggatttc ctggaacccg gacaaaccat caactctgac       840
     cgctacatcg cgacgctgac taagctgaag gctcgaactt ccagagtcag gccagagaag       900
     aagacaacct ttctcttgca acacgataac gccaggcccc ataccagttt gaagaccgtg       960
     gagcacattg ccagtcttgg ctggactgtc ctaccacacc caccgtatag tccggatttg      1020
     gcgccttctg acttccatct gttcgggccg atgaaagatg gactgcgtgg gcaacatttt      1080
     cctagcaacg acgccgtcat agcagctgtg aaacagtggg tcacctccgc tggtgcagat      1140
     ttttacgagc gcggcatgca ggctcttgtt catcgctggc gaaaatgcat agctaatggt      1200
     ggtgactatg ttgaaaaata gtgttttgta gctgagaatt tgctctatca aatagtgtta      1260
     ttgtgctctt tgtatctgtt gtagtttcca tggaaataaa taggaggcat tactttcgga      1320
     gcaacctacg                                                             1330
//
ID   EAVHP_I     repbase; DNA   ; VRT   ; 3572 BP.
XX
AC   AJ238124;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   Avian endogenous retrovirus EAVHP.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; EAVHP_I;
KW   EAVHP_LTR; LTR; env; gag.
XX
OS   Avian endogenous retrovirus EAV-HP
OC   Viruses; Retroid viruses; Retroviridae.
XX
RN   [1]
RP   1-3572
RA   Sacco A.M., Flannery M.D., Howes K., Venugopal K.;
RT   "Avian endogenous retrovirus EAV-HP shares regions of identity
RT   with avian leukosis virus subgroup J and the avian
RT   retrotransposon ART-CH.";
RL   J. Virol 74(3), 1296-1306 (2000).
XX
RN   [2]
RP   1-3572
RA   Sacco A.M.;
RT   "EAVHP_I.";
RL   Direct Submission to Genbank (09-APR-1999)Sacco M.A., Immunology
RL   and Pathology, Institute for Animal Health, Compton, Near
RL   Newbury, Berkshire, RG20 7NN, UNITED KINGDOM.
XX
DR   GenBank; AJ238124; Positions     366    3937.
XX
SQ   Sequence 3572 BP; 893 A; 822 C; 1069 G; 788 T; 0 other;
     tggtgacccc gacgtgatct gtctgctgag ggtagctgcc cggcatgccc gtgacgtgga        60
     gaagagcctg tgaggtggcg gcaggtcgcg cacggaagac gtattgcggt taagagcctg       120
     cgaggtggcg gcaggtcgca tacgtaacaa tggaccaagt cattaaggta cttgtgcagt       180
     tttgtaagga ctactgtgga aaatctactc cttcccggaa ggagatcgcg acagttttgt       240
     cgctgttaaa tgagctgggg gagctggact ctccccgcca cgttttggat tcgagtaggt       300
     gggacttgct caccttggcg ctatgccagc gcgccatggc cagtcagaag gctacggaac       360
     ttaaaacgtg gggactgatg ttaggagccc ttaaggcggc cagggcagag cacaaacttg       420
     gcgcggtcat gagcggggag ggagctccgg ggagcggatc tctggagttt tgcaggaccg       480
     gcgctcagac cggcgctcag acgacagcga ataaaacggc gacggagaga gaggaagatt       540
     gcgagaagga caacgaagag tcgcagaggc tcgggggggg tgcaacgacg ccgacggccc       600
     ctcctaattc tattgcgctg tcgccgcccc cgccctaccc taagcagccg ttatatcctt       660
     ccttggcaac gacatcggag cagggggcgg gaccatcccc aaaagggaag ggggagggga       720
     gacttaagct tactgattgg gggcagatca aagaggaagt ggcacagaaa ggcctggcgg       780
     caacttatac actcccagtt gttgtctcgg aggagggagg cccaatctgg gtcccgttgg       840
     acccaaaggg ggtagcaagg atgattgagg cagtagaaaa gaaagggctg aagtcgccat       900
     tgacgatgaa tgcccttgag gccctcacag catcgggccc aatgctgcct tatgatattg       960
     aaaatttaat gcgcatggtg ttgaaaccag tgcagtatac gctctggaga gaggagtggc      1020
     ataccaaatt aaaacaaatg ctgattacgg cgcagggtga tcaaagaaac cccatatatg      1080
     ggtctgatat acagagatta acgggcaatg caccaggtct gctgacccct caagcacaag      1140
     tttgtcaact tagaccagga gagttgatag cgactacgga cgctgcaata gacgcgttcc      1200
     gaaagcttgc aaggagcgct gagcccacta ctccgtggac agagatcgcg caaggcccca      1260
     cagagccgtt tcaggagttt gcagacagac taattaaggc agtggaaggc tcggatctgc      1320
     ccagagcagt tcacggtccc gtcatcctgg attgcttgta tcagaagtcc agtgaagggg      1380
     tgcaggggat tttgcgagcg gcgccgggga ggctccaaac ccctggtgag gccatcaagt      1440
     atgtcctaga taagcaaaag gcctgtccgt ctgtggcagg ggaggtagct gcggcggtag      1500
     caggagtgat gatggcctgt agggaggcgg accatcgtag tgcggaccga cagttaggac      1560
     cttgctttaa atgtggccag ttgggccata ttagggccca atgcagaatg ggcacgggtg      1620
     gaggtgtaac atgtcagcag tgtgggcgga agggtcatgc agcaccgcaa tgcagggccc      1680
     gtaggcctcc aagccaggga aataacaacg ggagacagtc cgagcacggt gacatcattt      1740
     ttcgacctat gcaggcccct gacctaagtt tacccatggc ggcgctgtct ctaagtaccc      1800
     atgagcgccc tctggtgaaa gccactattt cttgcaccaa cctcccgccg gattttcaag      1860
     gccctctatc tatctttgtc actgccctca tagattccgg cgccgacgtt actgtggtca      1920
     cggaaacaga atggccatcc tcgtggcccg cggaggcctc gcagtctatt atgggggttg      1980
     gaggggcgac cccctcacgc cggtctacca atgaggtaca agcggttgtg attaacaggg      2040
     atggctcctt agagaaaccg gcgttgctta cgccattggt ggcgcgtgtc cccggaactc      2100
     ttctggggcg ggatttcttg cgacagatag gcattccaca gtatcctctg aacaccttca      2160
     agggatacgt cactaatgtt actgcttgcg ataacgatgc cgatttagcc agccaaacag      2220
     catgcttgat aaaggctcta aatacaaccc tcccttggga cccccaagaa ttggatattt      2280
     tagggtccca gatgatcaag aacggaacaa cacgtacgtg tgttaccttt ggttcagtgt      2340
     gctataaaga gaacaatcgc agtatagtct gtcacaattt tgatgggaat tttaatggga      2400
     ctggtggggc ggaagcagaa ttgcgtgact tcatagcaaa atggaaaagt gatgaccttc      2460
     ttataaggcc ctatgtcaac caatcatgga cgatggtaag tccaataaac gtagagagtt      2520
     tttcaataag tcgtagatat tgtggattca ccagtaacga gactcgttac tatagagggg      2580
     acctttctaa ttggtgtggt tcaaaaaggg gaaaatggtc agcggggtac agcaacggga      2640
     caaaatgttc cagcaacacg acgggttgcg gtggtaattg cacaacggaa tggaattatt      2700
     atgcatatgg gtttaccttc gggaaacagc cagaggtgtt gtggaacaat gggactgcta      2760
     aggcactccc accaggtatt ttcttgattt gtggggacag ggcttggcaa ggcatcccgc      2820
     gtaatgcctt gggagggccc tgttatctag gacaattgac tatgctctct cctaacttta      2880
     ccacctggat agcgtatggg ccgaacatta cgggtcaccg ccgtagcagg cgctcgctga      2940
     gtcgtctctc gcctgactgc ggtgatgagc tacagctatg gagtgtgaca gcccggatat      3000
     ttgcttcttt ctttgctcct ggtatagcag cagcacaggc cttaaaggag atcgaacgat      3060
     tggcatgttg gtcggttaag caagcgaatt taacatcatt aatattgaat gcgatgctgg      3120
     aggacacgag cagcatccgg cacgcagtgt tgcagaatcg agcagccatc gatttcttac      3180
     tcctggcgca gggacacggg tgtcaagacg tggaagggat gtgttgcttc aatctcagcg      3240
     atcacagtga gtccattcac aaggcgctcc aagccatgaa ggaacataca gagaagatac      3300
     gggtggaaga tgatcccata ggggactggt ttacgcgcac gtttggtgat ctaggaaggt      3360
     ggctcgcgaa aggtgttaag acgctactgt ttgccttgct tgtcatagcc tgtctattag      3420
     ctatcattcc atgtttaatc aagtgctttc aggattgtct attgagaaca atgaatcagt      3480
     ttatggatga acgcataaaa tatcatagaa ttagggagca gctgtaggtt ccgaacgcga      3540
     tgtgacggga gctatcggca tagggagggg ga                                    3572
//
ID   CR1_GG      repbase; DNA   ; VRT   ; 4558 BP.
XX
AC   U88211;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   28-FEB-2001 (Rel. 6.01, Last updated, Version 3)
XX
DE   Gallus gallus retrotransposon CR1, complete consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1_GG;
KW   GGU88211.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-4558
RA   Haas B.N., Grabowski M.J., Sivitz B.A., Burch B.J.;
RT   "Chicken repeat 1 (CR1) elements, which define an ancient family
RT   of vertebrate non-LTR retrotransposons, contain two closely
RT   spaced open reading frames.";
RL   Gene 197(1-2), 305-309 (1997).
XX
RN   [2]
RP   1-4558
RA   Haas B.N., Grabowski M.J., Sivitz B.A., Burch B.J.;
RT   "CR1_GG.";
RL   Direct Submission to Genbank (23-JAN-1997)Institute for Cancer
RL   Research, Room197C, Fox Chase Cancer Center, 7701 Burholme Ave,
RL   Philadelphia, PA 19111, USA.
XX
DR   GenBank; U88211; Positions       1    4558.
XX
SQ   Sequence 4558 BP; 1162 A; 1007 C; 1439 G; 950 T; 0 other;
     tgcgacaaca gagcggtcac agctctcagc cgggcagctc tcatgagagc ggctgacgcg        60
     gcgtgacatt gccagtggca acgcctctgt atccatgccc acctgcctag aaaaagcctt       120
     tgagagggca gcgatgtgtc actgcccatc agagacggag aggaagagtc ggggtgtgag       180
     atccacgtag gctgttttaa caagtgttac tgagcctgct ggttgccatg ggtgcacccc       240
     agtggaaagt tggtgtcaca aaaactgtgg agacccaggc agaggtccca tgctcaagca       300
     ggaggaagac agtagccaag aagactgtag acagccagac tgaggacctg tgcatgcacg       360
     agaggaaggc tgatggtaag atatgtgtgg tgactcagat tgaggtccca tcacgagatg       420
     ctagtacaca ggtcactggc tgtgttgact gctggagcct ggcctttgca gtgccagacg       480
     atggaggccg cacttgcata agatgtgacc aactgaacga cttactcagc cttgtgattg       540
     acctgaagga ggaggtagag aggctgagga ccataaagga ctgtgagagg gagattgact       600
     ggtggtgcca gtccctatca gccctgaaat cttggcacac agctgaagct ctgcatggag       660
     catgtcaacc cctgccgcct tgcaaacagg tggtagaagg gaaccggcca gcagacggtg       720
     ctgcagtgag ctccctgtcc tctcctcccc ctagcagcaa tttgagagag gaggaggagt       780
     ggaaacagat accggctcgg cgaggtgggc atcccccatc ccgaccatcc tcagctcccc       840
     aggtgcctct gcacaatagg tttgaggccc tggaacttga gggaggggtg agtgagactg       900
     tggagggagg tccacccgtg aggttgcctc gggtgaagcg gtcgacccca cacctcacga       960
     ctgcctccac ccggaaggac agaagggtag ttgtcatagg tgactccctc ctgcgaggaa      1020
     tggaaggccc tatatgtcag cctgacccta cccgtaggga ggtgtgctgc ctccctgtgg      1080
     cacgggtcag ggacatttca aggaaacttc ctggactgat tcgcccttct gactattacc      1140
     ccttattgat aattcaggct ggcagagatg aaattgctga gaaaagcctg agttctatca      1200
     agaaagactt caggggactg gggcaggtag ttgatggagc tggcgtgcag gtggttttct      1260
     cttctatacc ttcagtggca ggaaagggta ctgagaggat ccaaaaaacc cacctcttaa      1320
     ataaatggct cagaggttgg tgcaaacaca ggaattttgg tttttttgac cacggggcaa      1380
     tttactcagc acctggcatg atggctgcag atggaagtag cctgtctctg aggggtaaga      1440
     ggatcttggc tgaggaactg gcaggactca ttgaaaggtc tttaaactag gtatgaaggg      1500
     ggaaggggac aaaacgaagg ccactggggt tgagcgggtc gttagagggc tcgtaccaaa      1560
     ctccatgggc aaagatggtg gagtacaaag gaatggagta gggcaggggg atgctgggaa      1620
     tgctactgtt ctaggggatc ctagatcccc tataaaggcg gtgagatgga aagcccagct      1680
     gaagtgcctt tataccaatg cacacagcct gagtaataaa caggacgagt tggaaactgt      1740
     gatgcacttg gaaagttatg accttgttgc tatcacagaa acatggtggg atgactccca      1800
     caactggaat actaccattg atgggtatcg gctctttaga agggataggc gaggtaggaa      1860
     gggtggggga gttgccctct atgtcaaaga gtggatagac tgtgaggagc tccctctgag      1920
     aaacagtcag gaacaggtcg agagcctgtg ggttagaatt agggatggga ctaataaagg      1980
     tcagctggtg ataggggtat actacaggcc acctgatcaa ggggaggctg ttgacgaggc      2040
     tttcttgctc cagatgtggg aggcatcgtg ctcacaggcc ctcgtcctgg tgggggactt      2100
     caaccatccg gacatctgtt ggaaagacca cacggcgagc tgcaagaggt ccagaaggct      2160
     cgtggaatgc attgatgaca actttctggt ccaggtagtg gacagaccaa ccagaggtga      2220
     agtgttgctg gacctgctgc tcaccaatgc ggaagagatc atcaaaggtg tcaacgttgg      2280
     aggcagcctg ggctgcagcg accatgccct ggttaagttc atgatctcaa gggatgtggg      2340
     cctggcaaat ggtggggtca ggaccctgaa ctttggaaga gagaacttta agctgttcaa      2400
     tggatcgtta gccatgatcc cctggaatgc tgtcattaaa gataaagatg ttgaggagag      2460
     ctggctactc ttcaaggatg ccctcctgaa agcacaagag gtctccatcc ctctgaatag      2520
     gaaagtgggc agacgagata ggaaaccagc atggctcggc aaggacctgc tgggcacact      2580
     gagggtgaag aaaggtgcgt acaagctctg gaaacaaggg cgtgtcacct gggaagagta      2640
     cagggatgct gtccggactt gcagacgtag gatcaggaaa gccaaggcgc aggtagaact      2700
     gaacttagcg agggatgtga aaaacaataa gaagacattc tacaggtaca ttggccagaa      2760
     aagacagacc aaaacaggtg taccttcttt agtaaactta aaaggagaac tggcttcaac      2820
     ggatgaagag aaagcggagg tactgaatga gttctttgcc tcagtcttca ctggaggcca      2880
     ggattccagt ctttctcacg tccctgagcc ctgcaccccc aagcctccag gtggggacca      2940
     ggggggtaaa tcccccccca cactaagggc agagcaagtc cgagaccgcc tcatgagact      3000
     ggatgagtac aagtcttcag ggccggatgg tgtgcatccc agggttctga aggagctggc      3060
     tgaggtggtt gctgagccac tctccatcat atttgagaag tcatggctgt caggcgaggt      3120
     cccagatgac tggaggaagg gttacgtcac tcccatttac aagaaaggga gcaaggagga      3180
     cccagggaac tacaggccgg tgagtctcac ctctgtgcct gggaagatca tggaacagat      3240
     cctcctggat gacatgctcg atcacatgag gaatgagcgt gtgatccgag acagccagca      3300
     cggcttcacc aggggaaggt catgcttaac caatcttgtg gccttctatg atggagtgac      3360
     ggcgttggtg gatgagggga aggcgaccga tgtcatttac ctggacttga ccaaggcctt      3420
     tgacatggtc ccccaccaca tccttatctc caaattggag ggatgtggat ttgatgggtg      3480
     gaccactcat tggataagaa attggttgaa aggccgcaga cagagggtgg tgaccaatgg      3540
     ctctatgtcc aggtggaggc cggtaatgag cggagtcccc caggggtctg tcttgggacc      3600
     ggtgctcttt aacatcttta tcaatgacat tgacgatgga atcgagtgca ccctcagcaa      3660
     atttgctgac gacaccaaac tgagtggtgc ggttgacacg gaggaaggaa gggatgccat      3720
     tcagagggac cttgacagac ttgaaaggtg ggcccgggtg aacctaatga ggttcaacac      3780
     ggcaaagtgc agggttttgc acttgggctg gaggaacccc aggcatctat acagactgga      3840
     aggagcagtc cttgagagca gctctgcaga gaaggacctg ggggtcctga tggatgacaa      3900
     acttaacatg agccagcagt gtgctcttgc agctcagaaa gcaaatggta tcctgggctc      3960
     catcatgaga ggggtggcca gcagggacag ggaggtgatt gtccctctct actctgctct      4020
     tgtgaggccc catctggagt actgtgtcca ggtatggagg ccccagtaca agaaagacag      4080
     agagctgttg gagagggtcc agaggagggc cacaaagatg atcagggggc tggagcacct      4140
     cccctacgag gacaggctga gggagctggg cttattcagc ctggagaaga gaaggctgcg      4200
     cggtgacctc attgcagcct ttcagtacct gaagggagcc tataaacagg aagggagtaa      4260
     actctttgaa agggtagata acagcaggac aagggggaac ggttttaagt tgaaagaggg      4320
     aagatttagg ttggatgtta gggggaagtt ctttaccagg agagtggtga ggtgctggaa      4380
     caggctgccc agagaggttg tggatgctct gtccctggag gtgttcaagg ccaggttgga      4440
     tggggccctg ggcaacctgg tctagtaaat ggggatgttg gtggccctgc ccagcagggg      4500
     ggttggagat tcgtgatcct cgaggtccct tccaacccag gccattctgt gattctgt        4558
//
ID   REX1_CY     repbase; DNA   ; VRT   ; 526 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Cyprinid transposon Rex1 - partial consensus.
XX
KW   Rex1; Non-LTR Retrotransposon; Interspersed Repeat; REX1_CY;
KW   RT gene; reverse transcriptase; transposon.
XX
OS   Poeciliidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Cyprinodontiformes.
XX
RN   [1]
RA   Volff N.J., Korting C., Schartl M.;
RT   "Multiple lineages of the non-LTR retrotransposon Rex1 with
RT   varying success in invading fish genomes.";
RL   Mol. Biol. Evol 17(11), 1673-1684 (2000).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of Rex1 transposon.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 97%. Contains a partial reverse
CC   transcriptase encoding domain.
XX
SQ   Sequence 526 BP; 128 A; 108 C; 165 G; 124 T; 1 other;
     atccagcctc tgctactggg tgagaagctg cggaggatgg gtgtcaacga ctcagtgatc        60
     tcctgggtta ctgactactt gacaggcagg ccacagtttg tccgtctggg cagtgtcctg       120
     tctgatgtgg tggtcagtga cgtaggagct ccacagggaa ctgtgctttc tccctttctc       180
     ttcaccntgt acaccactga tttccagtac aactctgagt catgtcacct acagaagttt       240
     tctgatgact cagcggttgt cgggtgtata ggggatggag gggaggggga gtacaggaca       300
     ctggtggaca gctttgtgga gtggtctgag cagaatcacc tgaggctcaa cattagtaag       360
     accagagaga tggtgattga cttcagaagg aagaagacac cttcacggcc actgaagatc       420
     aaaggggaag tggtggagga ggtggaggat tacaaatacc tgggagttgt aatcggcaac       480
     agactggact gggcatctaa cactgacgct gtgtgcaaga agggat                      526
//
ID   ONSATB      repbase; DNA   ; VRT   ; 1904 BP.
XX
AC   S57288;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Repetitive sequence SATB.
XX
KW   SAT; Satellite; Simple Repeat; ONSATB; Repetitive element.
XX
OS   Oreochromis niloticus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Labroidei; Cichlidae; Oreochromis.
XX
RN   [1]
RP   1-1904
RA   Franck P.J., Wright M.J.;
RT   "Conservation of a satellite DNA sequence (SATB) in the tilapiine
RT   and haplochromine genome (Pisces: Cichlidae).";
RL   Genome entry [NCBI gibbsq 128069] from the original journal
RL   article. This sequence comes from Fig. 4 36(1), 187-194 (1993).
XX
DR   GenBank; S57288; Positions       1    1904.
XX
SQ   Sequence 1904 BP; 543 A; 435 C; 401 G; 525 T; 0 other;
     aattcacgca tttaaccacc agctaaaatt tcatctcatt caaccattat tatagtcgtc        60
     ccactaggtg gcgctctaac cattactgac aaatggcata acaaacattt ccgagctcga       120
     gtctcatcac gcctgcgacc tttagtgaga gattggacat tgtgtttttg agcgacagca       180
     ggttactgct ttttggccag tgattgaaac tccacgtgcc gccatgacca ccccgtttcc       240
     ctgaacgtaa aaagcttcgc aatttaacat cacaatggtc tttagattcc acacacagga       300
     gatcgcgtaa atctaatgaa atcccttgga ggagttcgtc aaagtatgag gcctgaaaag       360
     aggggaaaat gtcgccaaat ttacacatta attttaaaat ggctgacttc ctgttggatt       420
     tgggatattg ctccaagaga cgtttttgta catcttgata tctccaataa gcttgccagg       480
     tttcaaactc atacataaaa cacagagcag gggctgttgt tttgaaattt tgttgggggc       540
     gctgtggagc cattttgcgc tgttcaagga aaatgaacat ataaaaagaa atccctcatc       600
     acattagagg tgtgcgccaa atttcaagac tttttaaact tttcaagccc ctcaaaagcc       660
     acttcatctt tcatggtgaa ctgcgttgcc accagggtgc gccgccgttc agtttatagt       720
     cacaattttc tcactgaagc atcaagaggg actgatggtg atattcaccg cttttgaggt       780
     ggccacgatg aacctgtgaa aatcagtaca acaaaatgaa agacatgaca tttcctggtg       840
     ccactaggtg gcgctctacg tattcctgac aatgggcata tcaatctgtt cagggcgggt       900
     ctgacatcat ccctgtaaaa tctggtactg atcacattgg atttcattga gttacactaa       960
     tttgtttctt catggcaaga cctcaatgtt cgccatgctg ctggggtcac acccttcagc      1020
     gaaaactcac agttttcact gtaacccaag accactccaa ctccttaagg ctttcctgga      1080
     gaaatttgag gctgcagatg tcacccatta caatactgta ccccaaagtg taaaacatga      1140
     catttcctgt tcccactagg tggcgctgtc cctgatgtca aatatggcag ttgaaatatg      1200
     ttcaggggtg gagccttatg atatgtgtgt ccactttggt caaggtcgga caatgtatga      1260
     cataacgaga ggcaataaga ttttcatggc gagtcatcga aattcgccgt gggcccacgg      1320
     cctcaccgta tcccgaaaac tcaaaagctc cgcaatttaa catggcccag gtgtgtagtt      1380
     gacacgtgac caaatatgaa gcttggtacg atgtaaattc caatgaggag ttcgcaaaag      1440
     tttgaggcat ggaaatggca aaattagagc caaaatgtca ccttcacttc caaatggcgg      1500
     acttcctgtt gggtctgcgt caatggtccc actgactttt ttgttcgtct tggcatgata      1560
     cacatgtgtg ccaaatttca tacatgtagc tcaaacgatg tgttcgtagg gctgcattta      1620
     acaaggcata ggtggcgcta cagagccatt tcccagtgct catatgtaaa accattaaaa      1680
     tacaaaattt ttcaccagac ctggcatgtg tgcaaaattt catgagtttt tgagcatgtt      1740
     aaagccctca aaaaggccct tgttttgcct gaataataat aataataata ataataataa      1800
     taattaaagc tgcaagcagc gttatgaggg ccctcgcacc ccggcactgc gggccacgca      1860
     caacacctac aaccagcacg tccgatctga tgtcacattg atgg                       1904
//
ID   Kronos_I    repbase; DNA   ; VRT   ; 5405 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 3)
XX
DE   Gallus gallus Kronos LTR retrotransposon, internal sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; GGERVL-B;
KW   GGLTR3F1; GGLTR3F2; Kronos_I; Gypsy-like.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-5405
RA   Smit A.F.;
RT   "GGERVL-B LTR retrotransposon internal sequence.";
RL   Direct Submission to Repbase Update (SEP-2004).
XX
RN   [2]
RP   1-5405
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           join(533..2107,2111..5293)
FT                 /product="Kronos_I_1p"
FT                 /translation="MLSISLNVFLSIRAXWKKSPPKPENADWQGIWRGLGK
FT                 ILEAWGPAMSWDFTLEHLWDPEKLSQHLSQGWCGLDRSKEVRLIWGLACAY
FT                 RALYNTILERESFRAEVQAKGGNLQVKSDQSQETPVTVSVAPVEGKKWKRV
FT                 SSRLERKKEEEEAEEEVEEDPGEGXSSEPRKAKAKTKRHGEESDEEEVSIT
FT                 VRRPLKMTEIQGSRKEFTRRPNETLVTWLLRCWDGGASSLSLDGNEARQLG
FT                 GIARDXSIDRGISRCLDGAATLWERMLVAVRERYPXKDSLKPAMKKWDTIE
FT                 KGIQYLREIAVVEMLYDPNFVPNDPRQDHDPERVRTTPDIWQKLTRAAPXR
FT                 YAPTLAATFDRYEDQQRRPLVFELILTLQNYEQHLPPTHASISAVSEXANR
FT                 LDEVQEQVSLLINRDEPVVVSETFDEDQDKQRGLMKELIKLMKIQLIKGDG
FT                 PPSSPVSSKISAIEGKRFPAQAXNNSKTTSRIALWRYLRDHGEDMRKWHDQ
FT                 ATPVLRARVRELQNRSTTSVVAPVTTGNERGPALSQGGERDNRVYWTVWIR
FT                 WPGTSEPQKYKALVDTGAQCTLMPSSHEGTESIHISGVTGGSQELTVLEAE
FT                 ISLTGKDWQKHPIVTGPGAPCILGIDYLRRGHFKDPKGYRWAFGIAAVDTD
FT                 NIKQLSVLPGLSEDPSAVGLLRVKEQQVPIATKTVHRRQYRTNRDSLLPIH
FT                 KLIRQLESQGVISRTHSPFNSPIWPVRKASGEWRLTVDYRGLNEVTPPLSA
FT                 AVPDMLELQYELESKAAKWYATTDIANAFFSIPLATECRPQFAFTWRGVQY
FT                 TWNRLPQGWKHSPTICHGLIQTVLEQGSAPEHLQYIDDIVVWGDTAEEVFE
FT                 KGEQIIQILLQAGFAIKRSKVKGPAQEIQFLGIKWQDGRRHIPADVIDKIT
FT                 AMSPPTNKKETQSFLGVVGFWRMHVPNYSLIVSPLYQVTRKKNDFTWGPEQ
FT                 QQAFEQIKQEIARAVALGPVRTGQDVKNILYTAAGEKGPTWSLWQRASGET
FT                 RGRPLGFWSRAYRGSEECYTPTEKEILAAYEGVRAASEVVGTETQLLLAPR
FT                 LPVLNWMFKGKVPSTHHATDATWSKWIALITQRARMGNLSRPGILEVIMDW
FT                 PEGKKFGTSPGEEVSRAKEAPPYNELPENEKKYALFTDGSCRIVGKHRRWK
FT                 AAVWSPTRQVAEATEGKGESSQFAEVKAVQLALDVAERERWPMLYLYTDSW
FT                 MVANALWGWLQQWEQNNWQRRGKPIWAAELWKDIAARIKNMVVKVRHVDAH
FT                 VPKSRATEEQQNNHQVDRAARIEVAQIDLDWQNKGELFLARWAHETSGHQG
FT                 RDATYKWARDRGVDLTMDAIAQVIHDCETRAIIKQAKRMKPLWEEGRWQKY
FT                 KYGEAWQVDYITLPRXRNGKRYVLTMVEATTGWLETYAVPHATARNTILGL
FT                 EKQVLWRHGTPERIESDNGTHFKNSLVNTWAKXHGIEWIYHIPYHAPASGK
FT                 IERYNGLLKTMLKAMGGGTFKHWEKHLAEATWLVNTRGSINRDGPTQSSSL
FT                 HTVEGDKVPVVHVKSMLGKAVWVLPAXGKGKPLRGTVFAQGPGSTWWVMQK
FT                 NGDVQCVPQGNLMLGECSQ"
XX
SQ   Sequence 5405 BP; 1538 A; 1144 C; 1449 G; 1256 T; 18 other;
     gtttttggtg gagaatgcgg gcaatctgaa gcttttaacg ttagcagaga aaaaaaagga        60
     tttctttaag ccggagactg cgagactgca aggcattgct agtgtgacct tcatagatta       120
     gattatagtc tgggcagtct gccaaactcc ggacactgta ccgagtgggt ttttttgttt       180
     tgtttttgtt tttcccccct tttagcagct accagctatg agtctgctct ttattgtagg       240
     agcgctgtat aagggattaa aagccatcat gttctttgga anttactggc ctataattaa       300
     catcatgatt tcttgctgtg gaattgtgtt catatataac caaataaggg cactgatgga       360
     gacacctgcc tggtaccttt atgcaatgtg gtatgatttg aattttgaca ctacatccca       420
     gatggaatag ctaattttac aaacaacacg atgtttcaaa ccggtttcca ggctttcttc       480
     tcagtttgtc acacgttttt cgaatgccga gctagtgctc atactcgtgt gcatgttatc       540
     aatctccctg aatgtattcc tctccattcg tgctangtgg aagaagtctc ctccaaaacc       600
     agagaatgct gactggcagg gaatatggag aggtttagga aaaatcttag aagcgtgggg       660
     acccgcaatg tcatgggatt tcactcttga acacctgtgg gatcccgaga aactaagcca       720
     gcatttgagt cagggatggt gcggcttaga tagatctaag gaggtacggc ttatctgggg       780
     cttggcttgt gcctaccgcg ctctatataa tactattctg gagagagaga gtttccgagc       840
     tgaggttcaa gccaaagggg gaaatctcca agtcaaatct gatcagtcac aggagacacc       900
     agtaacagtg tcagttgccc ctgtggaagg caagaaatgg aagcgggtgt cctcgcgtct       960
     agaacggaaa aaagaagaag aagaagcgga ggaggaggta gaggaagatc caggcgaggg      1020
     gncctcctca gaaccaagaa aggcaaaagc aaaaaccaag agacacggag aggagagtga      1080
     tgaagaggaa gtctctatta ctgttcgtcg acctctgaag atgactgaaa tccaaggctc      1140
     aagaaaggag tttacacggc gcccgaacga aactcttgtc acctggttgc ttcgctgttg      1200
     ggacggcggg gccagtagct tgtctctaga tggtaacgaa gcccgccaac taggaggcat      1260
     tgccagagac nnatctattg acagagggat tagtagatgt ttggatggag ccgcnaccct      1320
     ctgggaacga atgttagtag ccgtgaggga aaggtatccc tncaaagaca gtctgaagcc      1380
     tgcgatgaaa aagtgggata caattgaaaa aggtatccag tatttgaggg aaatagccgt      1440
     ggtggaaatg ttgtatgacc ctaattttgt tcctaacgat ccacgccaag accatgatcc      1500
     ngagagagtg aggacaacgc ctgatatatg gcagaaactc acaagagcag caccaganag      1560
     atacgccccc acactagcag caacgttcga cagatacgag gaccaacaga gaagacccct      1620
     agttttcgaa ttgattctta cacttcaaaa ctatgaacaa catctacccc caactcacgc      1680
     ttccatttca gccgtctcag aantagcaaa cagactggat gaagtgcaag agcaggtgtc      1740
     tctattgatt aatcgtgacg aacccgtagt agtatcagaa acgtttgatg aagatcagga      1800
     taagcaaagg ggcctaatga aggaactgat caaactaatg aaaatccaat taattaaagg      1860
     ngatggaccc ccctcctcac ctgtatcatc aaaaatctca gctattgaag gcaaacgctt      1920
     tcctgctcaa gcgagnaaca atagtaagac tacatcgcgt attgccttgt ggcgttacct      1980
     ccgtgaccat ggagaagaca tgaggaagtg gcatgaccaa gctactcctg tactgcgagc      2040
     acgggtgaga gaattacaga acagatcaac caccagtgta gttgctccag ttaccacagg      2100
     taatgaatag aggggccctg ccctcagtca ggggggggag agggataaca gagtttattg      2160
     gactgtgtgg atccgatggc ctggcacatc agaaccacag aaatataagg cactggtgga      2220
     taccggtgca cagtgcactc taatgccctc gagtcatgaa gggacagaat caatccatat      2280
     ttctggagtg actgggggct ctcaagaatt gactgtgttg gaggccgaaa taagcctcac      2340
     tggtaaagac tggcaaaaac accctattgt gactggccca ggggctccat gcatacttgg      2400
     tatcgattac ctcagaaggg ggcatttcaa ggatcctaag gggtatcgat gggcctttgg      2460
     aatagctgct gtagatacag acaacattaa gcagctgtct gttttgcctg gcctgtcaga      2520
     agatccgtct gctgtggggt tgctacgagt aaaagagcag caggtaccga ttgccacaaa      2580
     aacagtgcac agacggcagt accgcaccaa cagggattcc ttgctcccca ttcataagtt      2640
     gattcgtcaa ctagagagtc agggagtgat cagcagaact cactcacctt ttaacagccc      2700
     catatggcca gtgcgtaaag ccagtggaga atggaggctg acggtagact accgtggcct      2760
     gaatgaagtc acacccccgc tgagtgctgc tgtgccggac atgctagaac tccaatatga      2820
     actggagtca aaagcagcca agtggtatgc caccactgac attgctaatg ccttcttttc      2880
     cattcctctg gccacagaat gcaggccgca atttgccttc acctggaggg gcgttcagta      2940
     tacttggaac cgtttgcccc aggggtggaa acacagccca accatttgcc atgggttgat      3000
     ccaaactgta ttggaacagg gcagtgctcc tgagcacctg caatacattg atgatattgt      3060
     tgtgtggggc gatacagcag aggaagtttt tgagaaagga gagcaaataa tccaaattct      3120
     tctgcaagct ggttttgcta ttaagcgaag caaagtgaaa ggacctgccc aggagattca      3180
     gttcctaggt ataaagtggc aagatgggcg tcgtcacatc ccagcagatg tgatcgacaa      3240
     aatcactgcc atgtctccgc ccactaataa gaaagagaca caatcttttc tgggtgtagt      3300
     gggcttttgg agaatgcatg ttccaaacta cagcctcatt gtaagccccc tntatcaggt      3360
     gacgcggaag aagaatgatt ttacgtgggg tcctgaacag cagcaggctt ttgagcagat      3420
     taaacaggag atagcccgtg ccgtggccct ggggccagta cggacgggac aggatgtaaa      3480
     gaacatcctc tacactgctg ctggagagaa aggtcccacc tggagtttgt ggcaaagagc      3540
     ctcaggagag acccgaggcc gacccctggg attctggagt cgagcataca gggggtctga      3600
     agagtgctac actccaactg agaaggagat cttagccgcg tatgaggggg ttcgggctgc      3660
     ttccgaagta gtcggtactg aaacgcagct cctcctggca cctcgactgc cagtgctgaa      3720
     ctggatgttc aaaggaaagg ttccctccac ccatcatgct actgatgcca cttggagcaa      3780
     gtggattgca ctgattacgc aacgagctcg gatggggaac ctcagtcgtc caggaatctt      3840
     agaggtgatc atggactggc ctgaaggtaa aaagtttgga acatcaccag gagaagaggt      3900
     atcacgtgct aaagaggccc caccatacaa tgaactacca gaaaatgaaa agaaatatgc      3960
     cctgttcacn gatggatcgt gtcgtattgt ggggaagcat cgcagatgga aagctgctgt      4020
     gtggagcccc acacgacaag ttgcagaggc cactgaagga aaaggagaat caagccaatt      4080
     tgcagaggta aaggctgtcc agctggcctt agatgttgct gaacgggaga ggtggccaat      4140
     gctttatctt tatactgact catggatggt ggcgaatgcc ttatgggggt ggttacagca      4200
     gtgggagcaa aacaactggc aacggagggg taaacctatt tgggctgctg aactgtggaa      4260
     agacattgct gcccgaataa agaatatggt tgtaaaggtg cgccacgtag atgctcatgt      4320
     gcccaagagt cgggctactg aagaacagca aaataaccat caggtagatc gagctgccag      4380
     aattgaggtg gctcaaatag acttggactg gcagaacaag ggtgaattat ttctagctcg      4440
     gtgggcccat gagacctcgg gccatcaagg aagagatgca acatataagt gggctagaga      4500
     ccgaggggtg gacttaacta tggatgctat tgcacaggtt attcatgact gtgaaacacg      4560
     cgccataatt aaacaagcca agaggatgaa acctctctgg gaggaagggc gatggcaaaa      4620
     gtataaatat ggggaggcgt ggcaggttga ctatatcacc ttgccacgan ctcgcaatgg      4680
     taagcgttat gtgcttacca tggtggaggc gaccactggg tggcttgaaa catatgcagt      4740
     accccatgct accgcccgaa acaccatatt aggtctggag aaacaagtcc tgtggcgaca      4800
     tggcacccca gaaagaattg agtcagataa tgggactcat ttcaaaaatt ctcttgtaaa      4860
     tacttgggcc aaagancatg gcattgagtg gatttatcat atcccctatc atgcaccagc      4920
     ctctggtaag atcgaacgat acaatgggtt gttaaaaact atgctgaaag caatgggtgg      4980
     tggaacattt aagcactggg agaagcattt ggcagaagcc acctggttgg tcaacactag      5040
     aggatcnatc aatcgcgatg gtcctaccca atccagctcc ctacatactg tagagggaga      5100
     taaggtccct gtagtacacg taaagagcat gttgggaaaa gcggtttggg tccttccagc      5160
     ttntggaaag ggcaaacctc tccgtggaac tgtttttgcc cagggacctg ggtccacttg      5220
     gtgggtgatg cagaaaaatg gggatgttca gtgtgtacca caagggaatt tgatgctggg      5280
     ggagtgcagt cagtaattcc atgtatatat atgtgtatat gtgtgcgtgt gtaatgcatg      5340
     ttaattattg tttgtttgta tatatatatt aagcatgatg tagtgatgtg gaataagggg      5400
     tggaa                                                                  5405
//
ID   MER6        repbase; DNA   ; VRT   ; 865 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 3)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MER2-group; MER6;
KW   Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   119-835
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the
RT   human genome..";
RL   Nucleic Acids Res 18(1), 137-141 (1990).
XX
RN   [2]
RP   1-865
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [3]
RP   1-865
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   Internal deletion product of Tigger-like DNA transposon.
CC   25 bp terminal inverted repeats, TA target site.
CC   Over 2000, on average 18% diverged copies in our genome.
CC   Shorter deletion product are MER6A, corresponding to bp 1-341 &&
CC   600-865 of MER6, and MER6B (see below).
XX
SQ   Sequence 865 BP; 214 A; 174 C; 198 G; 278 T; 1 other;
     cagcaggtcc tcgaataacg tcgtttcgtt caacgtcgtt tcgttataac gttgatgaga        60
     aaaaaaatcg attcccggcc ggggccactg tctgtgtgga gtttgcacgt tctccccatg       120
     tctgcgtggg ttttctccgg gtactccggt ttcctcccac atcccaaaga tgtgcacgtt       180
     aggttaattg gcgtgtctam atggtcccag tctgagtgag tgtgggtgtg tgtgtgagtg       240
     cgccctgcga tgggatggcg tcctgtccag ggttggttcc cgccttgcgc cctgagctgc       300
     cgggataggc tccggccacc cgcgaccctg aactggaata agcgggttgg aaaatgaatg       360
     aatgaatgaa tacaaattat tgtaaaataa aaatttataa agtatacgat aatcatacaa       420
     atgcacgaca ataaatgatg tggtacgaaa gtgctcagcg agcccgccat atttgtgatt       480
     gtttgttttt gaactgcgtg gtggtaggag gtgctcctta caattttcgc tttgcaaaca       540
     tttattcctt gatttaaccc accaccacta cgaccgccgt cactcactga ttcaccaaaa       600
     attgggtaaa taattatctt acttgttttt attaatcttt cttaaatgta tgtatagctc       660
     acatttattt caatgtttaa tattagaagt gttttggtct ttatttagaa gtttggtgat       720
     gtttttgtga ccagaaatat gccgtaggaa cttaactctt gtttatatca attagcctat       780
     ggtaaaattg gtttcgttat acgtcgtttc gcttaaagtc gcagtttcca agaacctatc       840
     gacgacgtta agtgaggact tactg                                             865
//
ID   GGLTR6_LTR  repbase; DNA   ; VRT   ; 438 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-438
RA   Smit A.F.;
RT   "GGLTR6_LTR - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000262, GG000263 5 bp TSD; 14% subst 3' 115 bases distantly
CC   related to GGLTR9.
XX
SQ   Sequence 438 BP; 98 A; 110 C; 111 G; 117 T; 2 other;
     tgtgtggaaa aatacagatc acggcctgaa caggcgacta gcccatgaga aagggctcgt        60
     gttagcttgg gaacacaagt aaactgcctc tagcttctgc atgtagctag aagaaacttg       120
     tttgtgagaa actgctctgt agctgtaact aagtmtcctt gctttctgtg aatgaccttg       180
     cttatcctga tacgcgatgc tttattgtct cccgctgtta tatatatggc cacggtacta       240
     aggggttgtg cggacatctt gccggccggc cgccaccggt atctgctggg ggwaacccca       300
     gggcggacac tctaccggcc ggccgccccc agtaatgtga gtacctctct attaaactga       360
     tgaatgttaa cttgcctccg cgtactttct tcgggatcgg taaaccttac gcagaagcgc       420
     tggcgctttt gcattaca                                                     438
//
ID   CR1-Y2      repbase; DNA   ; VRT   ; 1213 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   CR1 Non-LTR Retrotransposon from chicken.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-1213
RA   Smit A.F.;
RT   "CR1-Y2 - CR1 Non-LTR Retrotransposon from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1213 BP; 291 A; 265 C; 397 G; 259 T; 1 other;
     agccttctat gatgtcatca ctggctgggt ggatgggggg agagcagtgg atgtagtcta        60
     ccttgatttc agcaaggcat ttgatactgt ctcccacaac atccttataa cgaagctgag       120
     gaagtgtgga atagatgagt ggacggtgag gtgggttgag aactggctga ctggcagagc       180
     tcagagggtt gtgatcggcg gcgcagagtc cagttggagg cctgtatcta gcggtgttcc       240
     tcaggggtcg gtgctgggtc cggtcttgtt caacatcttc atcaatgacc ttgatgaggg       300
     gatagtgtcc accctcagca agtttgctga tgatacgaag ctgggaggaa tggctgacac       360
     accagaaggc tgtgctgcca ttcagcgaga cctggacagg ctggagagtt gggcagagag       420
     gaaccagatg aggtttaaca agagcaagtg tagagtcttg cacctaggga ggaataaccg       480
     catgcaccag tacaggttgg gggatgacct gctggagagg agctctgcag agagggacct       540
     gggggtcctg gtggacaaca ggttggccat gagccagcag tgtgccctgg tggccaagaa       600
     ggccaatggc atcctggggt gcattaaaaa gagcgtggcc agcaggtcaa gggaggtgat       660
     cctccccctc tactctgccc tggtgaggcc tcacctggag tactgtgtcc agttctgggc       720
     tccccggtac aaaaaagaca gggatctcct ggaaagagtc cagcggaggg ccacaaagat       780
     gataaagggc ctggagcacc tctcttatga ggaaaggctg agcgacctgg gtctgttcag       840
     ccttgagaaa agaagactga gaggggatct gatcaatgtc tataaatatc taaggtgcgg       900
     gaggcaaagg gacgaggcca gactcttttc agcggtgcgt ggcgatagga caaggggaaa       960
     cggccacaaa ctgaagcata ggaagttccg cacaaatgtg cgtaagaact tcttcacagt      1020
     aagggtgacg gagcactgga acaggctgcc cagagaggtt gtggagtctc cttctctgga      1080
     gacgttcaag acccgcctgg acgcctacct gtgcaacctg gtctagggag cctgctttgg      1140
     caggggggtt ggactngatg atctctagag gtcccttcca gcccctacaa ttctgtgatt      1200
     ctgtgattct gtg                                                         1213
//
ID   REX1_FS     repbase; DNA   ; VRT   ; 523 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Fundulus sp. 'Laguna de Labradores' partial transposon Rex1 -
DE   consensus.
XX
KW   Rex1; Non-LTR Retrotransposon; Interspersed Repeat; REX1_FS;
KW   reverse transcriptase; transposon.
XX
OS   Fundulus sp. 'Laguna de Labradores'
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Cyprinodontiformes; Fundulidae; Fundulus.
XX
RN   [1]
RA   Volff N.J., Korting C., Schartl M.;
RT   "Multiple lineages of the non-LTR retrotransposon Rex1 with
RT   varying success in invading fish genomes.";
RL   Mol. Biol. Evol 17(11), 1673-1684 (2000).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of a fish partial Rex1 transposon.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 87%. Similar to Cyprinid
CC   transposon REX1_Cyp (64% similarity).
XX
SQ   Sequence 523 BP; 135 A; 130 C; 138 G; 108 T; 12 other;
     atccaaccag gactcctgaa ggacaagctg gaghggtcag gaghggacca ccanctttct        60
     cagtggatac tggattacct cacaggtcga ccgcagtatg tgaggacact gggctgtgnn       120
     tctgacargc tgakctgcag canaggagca ccgcagggaa ctgtgctggc accgtttctg       180
     ttcabcctct acactgcaga cttctccatc agctcaccag gctgccacct gcagaagttc       240
     tctgatgact ctgccatagt cggtctcatc acagatgagg acggatctga gtanagacan       300
     tggaathcag actttgtagg ctggtgccag cagaaccacc tcaggttaaa tgcagggaaa       360
     acaaaggagc tggtggtgga tctcgacaga cccacctcac tgacacaggt gaacatccag       420
     ggaactgatg tggagatagt ggactcttat aagtacctgg gtgttcacct gaaccataaa       480
     ctggactgga gtcacaacac tgatgctctt tacaggaagg gtc                         523
//
ID   RSG1        repbase; DNA   ; VRT   ; 489 BP.
XX
AC   M37214;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   S.gairdneri RSg-1 repeat DNA.
XX
KW   RSG1; RSg-1 repetitive sequence; SGRSG1.
XX
OS   Oncorhynchus mykiss
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus.
XX
RN   [1]
RP   1-489
RA   Winkfein J.R., Moir D.R., Krawetz A.S., Blanco J., States C.J.,
RA   Dixon H.G.;
RT   "A new family of repetitive, retroposon-like sequences in the
RT   genome of the rainbow trout.";
RL   Eur. J. Biochem 176, 255-264 (1988).
XX
DR   GenBank; M37214; Positions     108     596.
XX
SQ   Sequence 489 BP; 117 A; 129 C; 69 G; 174 T; 0 other;
     ttctctgctg ccaatgactg gaacgaactg caaaaatcac tgaacctgga gacccatatc        60
     tccctcacta gctttaagca ccagctgtca gagcagctca cagatcactg cacctgtaca       120
     tagcccacat gtaatcagcc catccaacta cctcattccc atactgtatt tatttatctt       180
     gctcctttgc accccagtat ctctactttc acattcatct tctgcacatc taccattcca       240
     gtgtctaatt tctatattgt aattacttcg ccaccatggc atatttattg ccttacctct       300
     cttatcttac ctcatttgca cacactatat agatttttct tttttctact gtattattga       360
     ctgtatgttt gtttattcca ggtgtaactc tgtgttgttg tatgtgtcga actgctgtgc       420
     tctatcttgg ccaggtcgca gttgtaaatg agaacttgtt ctcaacttgc ctacctggtt       480
     aaataaaat                                                               489
//
ID   XLGST1      repbase; DNA   ; VRT   ; 163 BP.
XX
AC   M36866;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   X.laevis repeat element from gastrula mRNA.
XX
KW   Repeat region; XLGST1.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-163
RA   Meyerhor W., Korge E., Knoechel W.;
RT   "Characterization of repetitive DNA transcripts isolated from a
RT   Xenopus laevis gastrula-stage cDNA clone bank.";
RL   Roux's Arch. Dev. Biol 196, 22-29 (1987).
XX
DR   GenBank; M36866; Positions       1     163.
XX
SQ   Sequence 163 BP; 66 A; 26 C; 22 G; 47 T; 2 other;
     acaacgtttc taacttaatt ggcttttggc aganagccca gaatagctaa caagtgcaaa        60
     taanatactt tgtaacaatt ttgagacaca aaaaaaacag tttagataag tagaaatatt       120
     ttcaaacttc cataacctgc caaattttgt aaaattgaac atg                         163
//
ID   CR1-Y4      repbase; DNA   ; VRT   ; 1214 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   CR1 Non-LTR Retrotransposon from chicken.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-1214
RA   Smit A.F.;
RT   "CR1-Y4 - CR1 Non-LTR Retrotransposon from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1214 BP; 292 A; 259 C; 395 G; 264 T; 4 other;
     agccttctat gatgtcatca ctggctgggt agatgggggg agagcagtgg atgttgtgta        60
     ccttgacttc agcaaggcnt ttgacactgt ctcccacaac atccttgtaa tgaagcttag       120
     gaagtgtggg atagatgagt ggacagtgag gtggattgag aactggctga ctggcagagc       180
     tcagagggtt gtgatcagtg gcgcagagtc tagttggagg cctgtaacta gcggtgttcc       240
     ccaggggtcg gtgctgggtc cggtcttgtt caacatcttc atcagtgacc tggatgaagg       300
     gatagagtcc accctcagca agtttgctga tgatacaaag ctgggaggag tggctgacac       360
     accagaaggc tgtgctgcca ttcagcaaga cctggacaga ctggagagtt gggcagagag       420
     gaacctgatg aggttcaaca agagcaagtg tagagtcctg cacctgggga ggaataaccg       480
     catgcatcag tacaggttag gggctgacct gctggagagg agctctgcag agaaggacct       540
     gggtgtcctg gtggacaaca ggttggccat gagccagcag tgtgcccttg tggccaagaa       600
     ggccaatggt atcctggggt gcattaaaaa gagcgtggcc agcaggtcga gggaggtgat       660
     cctccccctc tactctgccc tggtgaggcc acatctggag tactgtgtcc agttctgggc       720
     tccccagttc aagaaagaca ggganctcct agagagagtc cagcggaggg ccacaaagat       780
     gatgaggggc ctggagcatc tcctntatga ggaaaggctg agagacctgg gactgttcag       840
     cctggagaag agaagactga gaggggatct catcaatgct tataaatatc taaagggatg       900
     ggagtcaagt ggatggggcc aggctctttt cagtggtgcg cagcgacagg acaaggggca       960
     atgggcanaa actggaacac aggaagttcc atacgaacat gaggaagaac ttctttactg      1020
     tgagggtgac ggagcactgg aacaggctgc ccagagaggt tgtggagtct ccttctctgg      1080
     agatattcaa gacccgcctg gacgccttcc tgtgcgacct gctgtaggga acctgcttta      1140
     gcaggggggt tggactcgat gatctctaga ggtcccttcc aacccctgca attctgtgat      1200
     tctgtgattc tgtg                                                        1214
//
ID   XMTX1_I     repbase; DNA   ; VRT   ; 2452 BP.
XX
AC   AF130854;
XX
DT   28-APR-2000 (Rel. 5.03, Created)
DT   28-APR-2000 (Rel. 5.03, Last updated, Version 1)
XX
DE   XMTX1_I is an internal portion of the TX-1 LTR retrotransposon.
XX
KW   LTR Retrotransposon; Interspersed Repeat; XMTX1_I; XMTX1_LTR.
XX
OS   Xiphophorus maculatus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Cyprinodontiformes; Poeciliidae; Xiphophorus.
XX
RN   [1]
RP   1-2452
RA   Schartl M., Hornung U., Gutbrod H., Volff N.J., Wittbrod J.;
RT   "Melanoma loss-of-function mutants in Xiphophorus caused by
RT   ONC-Xmrk deletion and by insertion of a transposable element.";
RL   Genetics 153(3), 1385-1394 (1999).
XX
DR   GenBank; AF130854; Positions    2386    4837.
XX
SQ   Sequence 2452 BP; 476 A; 675 C; 546 G; 755 T; 0 other;
     cgaggtcaga cctttcacat gctgggagtc atcaccctcc tgcagttcgc cgtcctcatc        60
     ccctggaaag agaagatgtt cgtctgggat gtgaagatgc agattcttca tcctcagttg       120
     tcacagaggg ctcagtgtag tcatcaaaac tccacttctc ttgacacccc ctccttggag       180
     ttttgatttc cccatgaggt gatgaatgtc gaagaaaact tggatcgctc tgattcttct       240
     acaggaacct tcgctggatg aactgtcggt tcttcaggat gtgggatggt tctttaggga       300
     agatgggctg agacagaagg cctcaaacaa aaaaaaaaaa attctggctg ttcagcagag       360
     caaagcaaaa agcataagca tcatgacgct ttatccgtaa tcatgatcct tttccatttt       420
     aatccatcag gtggtgacag gagttcttct ttagcataat ccaatttctt cacggccctc       480
     ccagtccaaa gccttgaagt tgttctttga acggcaacct tcctgtaata gtggccagtc       540
     tactgtagga tggcatggtc gttgattctc tggccatcgt ctcgtaatgt tctggtttcg       600
     tgtagctaag aactggcttg agcactgctt cctcatggac ccctttcttc atcagtagta       660
     ctgtgttgaa gttcagtact tactttacaa aatcttgggc gttgaatctc agcttgatca       720
     ccgtagttgc aggccgatct tgagctttaa tccaaactct ctgccctgtt ttcagtgaca       780
     ctttgagctg caacttccct tttccttctc tgagcaaaaa ggagaagtgt cttcgcctcc       840
     ctgctttctg tgacgtgaac ggagttcctc tgcaggggaa gacctgctct tctagcagtt       900
     gtcactgtgt ccatcagcac caagaggtac ttctcacctc tctttcctgt tatccccatt       960
     ggctctgcta catccatgca gactgaaccc catgggactg tgctcttgat gaacaaacct      1020
     tccatccgct gccctgggtg ccctgcgtat cgaccacata cctcaaagtc acacagctgc      1080
     atcggatggg ctgaagggac atccagcagt cctgcttgct cagttcttca cgggggtgta      1140
     gcacgcctgc atattcgagg gccttatgca cgcaccgtac tacctggtcc ccgtgctact      1200
     ctaggaccac ctgtccttag gtgttctgtc ccacctcgac accggcagag acaacctttc      1260
     ttagtggcac gaaaggtcgt catctttgcc cctccatagg gcttcttctc aggtgtgcgc      1320
     cttgtcgctg cacctcaagt ttcggcggag cctcagttct gctttcttct tccataagtt      1380
     gtgatgagct acttgtttcc tctcgcactc tcaagctgct tctctcgggt ctggcactct      1440
     tgattttcct tttcaccagc tccagcaatc cttccagtac tgccgttact tctccggctt      1500
     gagcactacc gggagctttt cctttctgac ggcatctctc tttgccgtct tgcttcagaa      1560
     taaatcccca gtatgccgac tggtcggacc cctttctgga tccatcggtg tggattgtcc      1620
     cttccagttg tcctggcttc tcagatgtcg cttgcgtcat ttcttactgg tgggttgtgc      1680
     tggcccaatt tcaagctccg ggtccagcag gatgtcttta accatgtctg cgtctgtgtg      1740
     atgatgtcag ctgctggtgt ttgttcctct gttgccggat gtcttctcga tggctgcagt      1800
     ggaggacgcg gtgtgcttcc tcatccatcg tcagctgatg atacttttct gtgtttcttg      1860
     tgcatgcttg caggctggtc ttttcttttc ttgtcaacat gacatcacga tccactccag      1920
     caagagtgag ccaacttttc tttgtcaggg gctgatgttt cagttcctca ttcttggaac      1980
     caacttcccc acttgcttca ggtctgagtc acagtagctg tgcagaaact gatgcagttc      2040
     tgttgaggtc tcctcatttt ccaaacgatc tgacgggcgg cttctccggt ttcttcccca      2100
     gattttcctc ctcgaagtga tcatccatca ctccgtctct ctgtcggttc gagttgtcta      2160
     tcccccaaag cctctctttg cgctttcgag cagggatggg tctagactat gttggctact      2220
     agcttcactg tctggatccg gtcatttatc ctcagtagaa gctttccctc acctgtatgc      2280
     catacagtta ctgcaagggg tgtgactgac ggccttatca gtcaccatta actctattcc      2340
     ctaagagtta acaaaccaag tgagctattc agatcctcac atctgttttt actgacttgg      2400
     catatagggc cctcctactc tgttagtcgg tgccccacgt tgggcgccac tt              2452
//
ID   TC1_RP      repbase; DNA   ; VRT   ; 1621 BP.
XX
AC   BK001476;
XX
DT   10-SEP-2005 (Rel. 10.09, Created)
DT   10-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   Rana pipiens Tc1-like transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat.
XX
OS   Rana pipiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae;
OC   Rana.
XX
RN   [1]
RP   1-1621
RA   Miskey C., Izsvák Z., Plasterk R.H., Ivics Z.;
RT   "The Frog Prince: a reconstructed transposon from Rana pipiens
RT   with high transpositional activity in vertebrate cells.";
RL   Nucleic Acids Res 31(23), 6873-6881 (2003).
XX
DR   EMBL/GenBank/DDBJ; BK001476; Positions       1    1621.
XX
CC   Inverted repeats are at 1-214 and 1408-1621.
XX
FH   Key           Location/Qualifiers
FT   CDS           380..1399
FT                 /product="TC1_RP_1p"
FT                 /translation="MPRPKEIQEQLRKKVIEIYQSGKGYKAISKALGIQRT
FT                 TVRAIIHKWRRHGTVVNLPRSGRPPKITPRAQRRLIQEVTKDPTTTSKELQ
FT                 ASLASVKVSVHASTIRKRLGKNGLHGRVPRRKPLLSKKNIKARLNFSTTHL
FT                 DDPQDFWDNILWTDETKVELFGRCVSKYIWRRRNTAFHKKNIIPTVKYGGG
FT                 SVMVWGCFAASGPGRLAVIKGTMNSAVYQEILKENVRPSVRVLKLKRTWVL
FT                 QQDNDPKHTSKSTTEWLKKNKMKTLEWPSQSPDLNPIEMLWYDLKKAVHAR
FT                 KPSNVTELGQFCKDEWAKIPPGRCKSLIARYRKRLVAVVAAKGGPTSY"
XX
SQ   Sequence 1621 BP; 512 A; 358 C; 348 G; 403 T; 0 other;
     cagtggtgtg aaaaagtgtt tgcccccttc ctcatttcct gttcctttgc atgtttgtca        60
     cacttaagtg tttcggaaca tcaaaccaat ttaaacaata gtcaaggaca acacaagtaa       120
     acacaaaatg caatttgtaa atgaaggtgt ttattattaa aggtgaaaaa aaatccaaac       180
     catcatggcc ctgtgtgaaa aagtgattgc cccccttgtt aaaacatact ataactgtgg       240
     ttgtccacac ctgagttcaa tttctctagc cacacccagg cctgattatt gccacacctg       300
     ttcacaatca aggcatcact taaataggag ctgcttgaca cagtaaggtc caccagaaga       360
     tccttaaaag ctacacatca tgccgagacc caaagaaatt caggaacaat tgagaaagaa       420
     agtaattgag atctatcagt ctggaaaggg ttataaagcc atttccaaag ctttgggaat       480
     ccagcgaacc acagtgagag ccattatcca caaatggcga agacatggaa cagtggtgaa       540
     ccttcccagg agtggccggc cgcccaaaat taccccaaga gcgcagcgac gactcatcca       600
     agaggtcaca aaagacccca caacaacgtc caaggaactg caggcctcac ttgcctcagt       660
     taaggtcagc gttcatgcct ccaccatcag gaaaagactg ggcaaaaatg gcctgcatgg       720
     cagagttcca aggagaaaac cactgctgag caaaaagaac atcaaagctc gtctcaattt       780
     ctccacaaca catcttgatg atccccaaga cttttgggac aacattctgt ggaccgatga       840
     gacaaaagtg gaactctttg gaaggtgtgt gtccaagtat atctggcgta gaaggaacac       900
     tgcatttcat aaaaagaaca ttataccaac agtaaaatat ggtggtggta gtgtgatggt       960
     ctggggctgt tttgctgctt caggacctgg aagacttgcc gtgataaaag gaactatgaa      1020
     ttctgctgtc taccaagaga tcctgaagga gaatgtccga ccatctgttc gtgtactcaa      1080
     gctgaaacga acttgggttc tgcagcagga caatgatcct aaacacacca gcaagtccac      1140
     caccgaatgg ctgaagaaaa acaaaatgaa gactttggag tggcctagcc aaagtcctga      1200
     cctgaatcct attgagatgt tgtggtatga ccttaaaaag gccgttcatg ctcgaaaacc      1260
     ctctaatgta actgaattag gacaattctg caaagatgag tgggccaaaa ttcctccagg      1320
     acgctgtaaa agcctcattg cacgttatcg caaacgcttg gttgcagttg ttgctgctaa      1380
     gggtggccca accagttatt aggtttaggg ggcaatcact ttttcacaca gggccatgat      1440
     ggtttggatt ttttttcacc tttaataata aacaccttca tttacaaatt gcattttgtg      1500
     tttacttgtg ttgtccttga ctattgttta aattggtttg atgttccgaa acacttaagt      1560
     gtgacaaaca tgcaaaggaa caggaaatga ggaagggggc aaacactttt tcacaccact      1620
     g                                                                      1621
//
ID   GGLTR8A_LTR repbase; DNA   ; VRT   ; 1064 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-1064
RA   Smit A.F.;
RT   "GGLTR8A_LTR - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000081, GG000168 3' 120 bp 75% similar to that of GGLTR5A/B
CC   Many obscure subfamilies (other recon consensi 'included' are
CC   GG000062, GG000063, GG000070, GG000079, GG000265, GG000317, and
CC   GG000348; GG0000311 is part of a recent segmental duplication)
CC   8% subst; 5bp dups.
XX
SQ   Sequence 1064 BP; 216 A; 269 C; 386 G; 191 T; 2 other;
     tgtattgggt ttacgtggca aggttttggt agcggggggg ctgcaggggt ggcctctgtg        60
     agcagagccc agcagctgcc ccatgtcaga tcagagccag ctccagctgc tccaaaaggg       120
     acccgctgct gccagagctg agccgtgagc gacgctgggt gtgcctctgg gagagcagat       180
     ttaaggaagg gaaaaactgc tgcgcaacag cagctgggag agaggagtga gaaatgngag       240
     agaagcagcc ctgcagccac caaggtcagt gcaggaggag ggcaggaggt gctccaggca       300
     cggagcagaa gctccctgca gcccaggaga ggcccacgga ggagcaggct gtccccctgc       360
     agcccacggg caccacgcgg agcagatctc cacgtgcagc catggaggag cccacggtgc       420
     agcagtggat gnggcctgaa ggaggcacag cccatggaga gcccccgcag gagcagcccc       480
     gggccggagc tgcagcccgt ggagaggagc ccgcggtggg gcaggagggc tgggggagct       540
     gccgcccgtg gggacccgtg ctggagcagt gcctgaaggg tgggccccgt ggtacggagc       600
     cgtgttggag cagtgctggg agagctgcag cctgtgggaa gcccacgtgg gatcagttcg       660
     ggaaggacgg catcccgtgg gagggaccca cgtggagcag gggcagagag tgaccatgga       720
     ggagcggcag agacgaagcg ttatggactg accgcagccc ccattccctg ttcccctgtg       780
     ctgctcgggg ggaggaggta gaagagggtg gatgggggga aggtgttttt agtttgcttt       840
     tagttctcac tgctctagtc tgttagtaat aggcaataaa ttacattaat ctccctacgc       900
     tgagtctgtt ttgcccgtga cggtaattgg tgagcgatct ccctgtcctt atctcaaccc       960
     ttgagccctt tttcattgta ttttctcccc ctcttccttt gaggaggggg agtgagagag      1020
     cagtgtggtg gagtttagct gcccatcagg gtgaaaccac caca                       1064
//
ID   XbaI_IP     repbase; DNA   ; VRT   ; 321 BP.
XX
AC   AF112199;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Ictalurus punctatus strain Stuttgart XbaI element 7, complete
DE   sequence.
XX
KW   XbaI; XbaI_IP; Repetitive element.
XX
OS   Ictalurus punctatus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Siluriformes; Ictaluridae; Ictalurus.
XX
RN   [1]
RA   Liu Z., Li P., Dunham A.R.;
RT   "Characterization of an A/T-rich family of sequences from channel
RT   catfish (Ictalurus punctatus).";
RL   Mol. Marine Biol. Biotechnol 7(3), 232-239 (1998).
XX
RN   [2]
RA   Liu Z.;
RT   "XbaI_IP.";
RL   Direct Submission to Genbank (09-1998)Fisheries, Auburn
RL   University, 203 Swingle Hall, Auburn, AL 36849, USA.
XX
DR   Genbank; AF112199; Positions       1     321.
XX
SQ   Sequence 321 BP; 118 A; 57 C; 50 G; 96 T; 0 other;
     tctagaaagt aagttttcat caaaagtaca ataacaaaac tagttcccat tcatcctgtg        60
     tccccttaca cacttgtgct ctttatccgc tcaaaacgct atacagcgaa cgagaaggcg       120
     ctaggagcaa aggaaagtgg tttttctaac aaactcatat aatcagttgc ccgacctact       180
     ccaatttgat ttttttcaca tagttagaca taatatagta ctatgaaatg tttctgaccc       240
     aaaatattat gaaatatgat tacattaaaa tgcaaaagtt gatgaaaaag tatgataagg       300
     tgaaaaaagt gacattttat g                                                 321
//
ID   TOL3_OL     repbase; DNA   ; VRT   ; 655 BP.
XX
AC   D84375;
XX
DT   22-JUL-1999 (Rel. 4.06, Created)
DT   22-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Putative non-autonomous DNA transposon Tol3.
XX
KW   hAT; DNA transposon; Interspersed Repeat; TOL2_OL; TOL3_OL.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RA   Hori H.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (10-APR-1996). Hiroshi
RL   Hori, Nagoya University, Division of Biological Science;
RL   Furo-cho, Chikusa-ku, Nagoya, Aichi 464-01, Japan
RL   (E-mail:hori@bio.nagoya-u.ac.jp, Tel:052-789-2504,
RL   Fax:052-789-2974).
XX
RN   [2]
RA   Koga A., Suzuki M., Inagaki H., Bessho Y., Hori H.;
RT   "Transposable element in fish.";
RL   Nature 383(6595), 30-30 (1996).
XX
DR   GenBank; D84375; Positions    1433    2087.
XX
CC   Originally described together with TOL2.
XX
SQ   Sequence 655 BP; 192 A; 126 C; 127 G; 210 T; 0 other;
     attaaagggt tagttcaccc aaaaatgaaa ataatgtcat taatgactcg ccctcatgtc        60
     gttccaagcc cgtaagacct ccgttcatct tcagaacaca gtttaagata ttttagattt       120
     agtccgagag ctttctgtgc ctccattgag aatgtatgta cggtatactg tccatgtcca       180
     gaaaggtaat aaaaacatca aagtagtcca tgtgacatca gtgggttagt tagaattttt       240
     tgaagcatcg aatacatttt ggtccaaaaa taacaaaacc tacgacttta ttcggcattg       300
     tattctcttc cgggtctgtt gtcaatccgc gttcacgact tcgcagtgac gctacaatgc       360
     tgaataaagt cgtaggtttt gttatttttg gaccaaaatg tattttcgat gcttcaaata       420
     attctaccta acccactgat gtcacatgga ctactttgat gtttttatta cctttctgga       480
     catggacagt ataccgtaca tacattttca gtggagggac agaaagctct cggactaaat       540
     ctaaaatatc ttaaactgtg ttccgaagat gaacggaggt gttacgggct tggaacgaca       600
     tgagggtgag tcattaatga catcttttca tttttgggtg aactaaccct ttaat            655
//
ID   TC1_XL      repbase; DNA   ; VRT   ; 1356 BP.
XX
AC   U43667;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Xenopus laevis transposon TXr.35 transposase pseudogene, complete
DE   cds.
XX
KW   DNA transposon; Interspersed Repeat; TC1_XL; tc1-like; XLTC1;
KW   Transposable element.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-1356
RA   Lam L.W., Seo P., Robison K., Virk S., Gilbert W.;
RT   "Discovery of amphibian Tc1-like transposon families.";
RL   J. Mol. Biol 257(2), 359-366 (1996).
XX
RN   [2]
RP   1-1356
RA   Lam L.W.;
RT   "TC1_XL.";
RL   Direct Submission to Genbank (20-1995)Wan L. Lam, Molecular and
RL   Cellular Biology, Harvard University, 16 Divinity Ave.,
RL   Cambridge, MA 02138, USA.
XX
DR   GenBank; U43667; Positions       1    1356.
XX
CC   TIR 1..180
CC   CDS 148..1185
CC   /product="transposase"
CC   TIR 1190..1356.
XX
SQ   Sequence 1356 BP; 444 A; 278 C; 276 G; 358 T; 0 other;
     cttattcttt tgcatgtttg tcacacttaa atgtttctgc tcatcaaaaa ccgttaacta        60
     ttagtcaaag ataacataat tgaacacaaa atgcagtttt taaatgaagg tttacgttat       120
     taagggagaa aaaaaactcc aaatctacat gggcctgtgt gaaaaagtga ttgcccccct       180
     tgttaaaaaa taacttaact gtgctttatc acacctgagt tcaatttcaa aggttataaa       240
     gccatttcta aagctttggg actccagcga accacagtga gagccattat ccacaaatgg       300
     caaaaacatg gaacagtggt gaaccttccc aggagtggcc ggccgaccaa aattacccca       360
     agagcgcaga gacaactcat ccgagaggcc acaaaagacc ccaggacaac atctaaagaa       420
     ctgcaggtct cacttgcctc aattaaggtc agtgttcacg actccaccat aagaaagaga       480
     ctgggcaaaa acggcctgca tggcagatct ccaaggcgca gaccactttt aagcaaaaag       540
     aacattaagg ctcgtctcaa ttttgctaaa aaacatctca atgattgcca agacttttgg       600
     gaaaatacct tgtggaccga cgagacaaaa gttgaacttt ttggaaggtg cgcgtcccgt       660
     tacatctggc gtaaaagtaa cacagctttt cagaaaaaga acatcatacc aacagtaaaa       720
     tatggtggtg gtagtgtgat ggtctggggt tgttttgctg cttcaggacc tggaagactt       780
     gctgtgatag atggaaccgt gaattctact gtctaccaaa aaatcctgaa ggagaatgtc       840
     cggccatctg ttcgtcaact caagctgaag cgatcttggg tgctgcagca ggacaatgac       900
     ccaaaacaca ccagcaaatc cacctctgaa tggctgaaga aaaacaaaat gaagactttg       960
     gagtggccta gtcaaagtcc tgacctgaat cctattgaga tgttgtggca taaccttaaa      1020
     aaggcggttc atgctagaaa accctcaaat aaagctgaat tacaacaatt ctgcaaagat      1080
     gagtgggcca aaattcctcc agagcgctgt aaaagactcg ttgcaagtta tcgcaaacgc      1140
     ttgattgcag ttattgctgc taagggtggc ccaaccagta attaggttca gggggcaatt      1200
     actttttttt tttttttttg gattcttttc tccctaaata ataaaaaccc tcatttaaaa      1260
     actgcatttt gtgtttactt gtgttatctt tgactaatag ttaaatgtgt ttgatgatca      1320
     gaaacatttt gtgtgacaaa catgcaaaag aataag                                1356
//
ID   L1-1_XT     repbase; DNA   ; VRT   ; 5743 BP.
XX
AC   .
XX
DT   31-MAY-2005 (Rel. 10.05, Created)
DT   31-MAY-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   A family of L1 non-LTR retrotransposons - a consensus sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase.
XX
OS   Xenopus tropicalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Silurana.
XX
RN   [1]
RP   1-5743
RA   Kapitonov V.V., Jurka J.;
RT   "L1-1_XL family of frog non-LTR rtetrotransposons.";
RL   Repbase Reports 5(5), 120-120 (2005).
XX
CC   [1] (Consensus)
XX
CC   L1-1_XT is a young family of non-LTR retrotransposons that belong
CC   to the L1 clade. Some copies are less than 1% divergent from the
CC   consensus sequences. The consensus sequence is incomplete at its
CC   5' terminus. L1-1_XT encodes two proteins similar to
CC   corresponding proteins in the human anf fish L1s.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..975
FT                 /product="L1-1_XT_1p"
FT                 /translation="QYQNYSPPISLPTTAMGKHTQRARSEAAARLEKYAHS
FT                 PSQVPPDENSCQSSVSEPPGPPPDMDPPQPTMGDLLEAIKESRAATTSQLE
FT                 GIKIDLSLLRQDLQNLRERTTAVETRVSSLEDTVNPLHNTMPSVKQQIQAL
FT                 MDKTEDLENRLRRSNVRIVGLPEKVEGQHPEAFISKWLQDTLGTDIFSSIF
FT                 VVERAHRVPPRPPPPGAPPRPFLLKLLNFRDRDAALRAARLKGPILYNGST
FT                 ISLYPDFSPAIQKKRASFTAVKRRLREANISYSILYPAKLRIQDGTTTQFF
FT                 DSPVDADDWLNRKGQQHPAPIGRRSPPNSPRQH"
FT   CDS           1780..5517
FT                 /product="L1-1_XT_2p"
FT                 /translation="MASYSIVSWNIRGLNSKFKRSLMWSYLKRYPPSILLL
FT                 QETHLVGQKVLALKKPWVGWSFHASFSTHSRGVSILIRKNIPFELLHLVTD
FT                 HYGRYVIMACLIANKPITIVNVYVPPPFNVTVLEHIAKKLADLPPAPTCIL
FT                 GDMNQVMDLFWDRLHPTSSGPTNLTQWANSLGLTDAWRWKHPDDKVYSCHS
FT                 QPHKSFSRIDLALTSPDILPLIEHASYLPQSLSDHSPLQLIFRWLPSPPDK
FT                 LWRLSPLWLKHPDILEPHIEAYQEYWDINSGSASQGMVWDASKAAARGSLM
FT                 TSVAQVRTAAKEAVATAENTLTQAQQQHYNNPSVNTYEEVRRAEAALARES
FT                 TAIAKKALLYSSQRIFDKGDKNSKTLAFLAKQQQPSTAVPRIQSQEGRMIY
FT                 EPHLIAETFAKYYENLYNSTTSCTIPQLNSYLDSSAIPTISPAERAWLDLP
FT                 ITVXEIERAIQSLPSNKTPGLDGLPPDWYKSLNKIIAPRLLETFQAAWDSQ
FT                 SLPPSFHEALIVVIPKSGRDPTLCSSYRPISLINTDAKILAKILATRLTRA
FT                 IQDLIHPDQSGFMPGRATDFNLRRLFTNLQLPHTNKGSRVVASLDSEKAFD
FT                 SVEWNYLWEVLHRFGLGTKFIQWVKLLYKSPVAKVRVNNFISPPFQLRRGT
FT                 RQGCPLSPILFALAIEPLAITIRECASIKGLQFANITEKVSLFADDILIYL
FT                 ADPLESLSTMLTVVQEFGKYSGLRINWEKSQLFSIDPTPHIPPPQQTQLKW
FT                 VTSFKYLGIWIHPDPQLFLQLNLDPIMDSLSQVLKTWAKLPLTLWGRVNII
FT                 KMIYLPKFLYIFHNTPFTIPRSFFKKLNRTITSFIWANGTPRISWERLTAT
FT                 VENGGLALPHFYFYYLASQIYYIHWCLAPNPYNPNTQLQASILHSIEGLST
FT                 YPYRHHTDMTNLPHTLLTPHKAWTTALKTMHHPWPLLSPQLPLWANSLLPD
FT                 LQELQDYTYWPRLGFKKLGDLTLGPQFPTYQDLQDRALGKQIQFYRYLQLR
FT                 HAFHAQFHTLPPTITTVTLEDILLSPSPAKLLSRLYKEIMTTIKPPFDRAY
FT                 RLWTQDIPELAQDQWEEATENAYNFLIPIKDRLIQYKFLHQTYITPLKLMR
FT                 FGRRQDDLCPRCKSPGANFFHMIWSCPPIHEFWSKIMETLASELGTPQIVD
FT                 PITCLLGVIDGILSTNVARVRLRTLMFYAKKTVIMHWMGDTLPSQTFWRRL
FT                 VDGALPLIKLTYETRGAYDKFDKIWENWYNQDNLDT"
XX
SQ   Sequence 5743 BP; 1748 A; 1699 C; 1014 G; 1277 T; 5 other;
     caataccaga actactcccc tccaatctct ctaccaacca cagccatggg caaacataca        60
     caacgcgccc gatctgaggc tgctgcccgt ctggaaaaat acgcacattc tcctagccag       120
     gtccctccgg atgaaaactc ctgccaatcc tccgtttcag aaccacccgg cccccctcca       180
     gatatggacc ccccccaacc cacaatgggg gaccttctag aggccatcaa ggaaagcaga       240
     gcagcgacta cctcgcagtt ggaagggatc aaaatagacc tatccctcct gcgccaggac       300
     cttcaaaacc tgcgtgaacg caccactgca gtagaaacac gagtttcatc cctagaggac       360
     acagtcaacc ccctgcacaa cactatgccc tcagtaaagc aacaaatcca ggcactgatg       420
     gataaaactg aggacctgga gaacaggcta cggaggagca atgtcaggat agtggggctc       480
     cctgaaaaag tggaaggcca acacccagaa gccttcatca gtaaatggct acaagacaca       540
     ctgggaacag atatattctc ctcaatattt gtggtggaaa gagcccaccg agttcctccc       600
     agaccacctc caccaggagc acccccaaga ccattcttgc ttaaactact taacttccga       660
     gaccgagatg cagcactgag ggcagcaaga ctcaaaggcc cgatcctgta caacggctct       720
     acaatctctc tatatcctga cttttctcct gccatccaga aaaaaagagc atccttcact       780
     gcagttaaaa ggcgacttag agaggccaac atatcctaca gcatccttta cccagcaaag       840
     ctgagaatac aggatggaac cacaacacaa ttcttcgact ctccagtaga cgcggatgac       900
     tggctcaaca gaaagggaca acaacatcct gcaccaatag gacggcgctc tccacccaac       960
     agcccacgcc agcactaaag tccatggaaa acttgacctt atagcctact ttccacacat      1020
     tgcctttccc cgcactatcc cggccttgat atacagcaaa tatgcggaca ggtccctgtg      1080
     gccttggcca tccggaaaca atagacttgg acagctcggc ccccaacact accaatcctc      1140
     tgttgtcctg tactctggac cagctaccaa cactactaga tctacactcc tgacaacgac      1200
     ctccagatat agacgatcta agggggcctg acaggtactt gtccctctat ccacactgag      1260
     agaacccgca ccccaccaca ctgctctaca caaaagggac acccaaccct ttgaacccca      1320
     tcgaaggcac cgtcactgcc ataatgggac tccccccaca cacacacccc ttgcaacagc      1380
     accacatttt ggtacaggga ctagagaccc caccactaca ataagctgac tcggccggga      1440
     tagaaatcca gcttgtggag ctccatattt ctcctgacac atccaggaga ccacctacaa      1500
     ccacacggtt aacccacctt acctacagca gttatccaac tgccacaata ataaaacttt      1560
     gcgacacgtt caagttataa ccttagaggt attctgtttt gggtataaga cccacccaag      1620
     tttggagggt gggtagggaa gttatgggtt gtttttactt gttttgtttg tatgtatatc      1680
     agtactgcta ctttatcaat gctaatggtg tcgggtcagg tgcaggacgc agtgtaagca      1740
     agtcacatcc ccacaaaatc atatacagta acgatatcaa tggcttccta tagtattgtt      1800
     tcatggaata taaggggatt aaactccaaa tttaaacgaa gtctaatgtg gtcctaccta      1860
     aaacgttacc ccccatcaat tctccttctc caagaaacgc atttggtagg ccaaaaagta      1920
     ttagcactaa aaaaaccatg ggtgggttgg tcctttcatg cctccttctc tacccactcc      1980
     agaggagtat ccatattaat caggaaaaat ataccctttg aattactgca cttggttacc      2040
     gaccactacg gaagatacgt aataatggca tgcctcattg ccaacaaacc aattacaata      2100
     gtcaatgtat atgtaccacc cccatttaat gttacagtac tagaacatat agcaaaaaaa      2160
     cttgctgact tgcctcctgc accaacctgc atattgggag atatgaacca ggtcatggac      2220
     ctattctggg acagactcca ccctacatcc tcggggccca caaacctaac acaatgggca      2280
     aactccctag gcctcactga cgcttggcgt tggaaacacc cagacgacaa ggtatactcc      2340
     tgccactccc agccccacaa gtccttctct agaatagatt tggccctaac ctcacctgac      2400
     atccttccgc taattgaaca cgcctcttat ctaccccaat ccttgtcaga ccactccccc      2460
     ctccaactta tatttcggtg gctcccttct cctccagaca aactgtggcg tctgagtcct      2520
     ctgtggctca aacaccctga catactagaa ccgcacatag aagcctacca agaatactgg      2580
     gacataaact cagggtcagc ctctcaggga atggtgtggg acgcctccaa ggcagctgct      2640
     cggggctccc tgatgacctc agtggcccag gtcagaactg cagcaaaaga ggcagttgcc      2700
     acagctgaaa acacactaac acaagcacaa caacagcact ataataaccc atctgtaaat      2760
     acctatgaag aggtgagacg agcagaagca gccctagcca gagaatccac tgctatagct      2820
     aaaaaagccc tattatacag ctcccaacga atctttgata aaggggacaa aaacagcaaa      2880
     acattggcct tcctagccaa acagcagcaa ccctctacag ctgtgccacg tattcaatcc      2940
     caggagggcc gaatgatcta tgaacctcac ttaatagctg aaacatttgc taagtactat      3000
     gaaaacctct ataactccac tacctcatgt acaatacccc agctgaacag ctaccttgac      3060
     tcctcagcaa tacccacaat atcccctgca gagagagcct ggcttgacct acctataact      3120
     gttsawgaaa ttgaaagggc catacaatcc cttccatcca ataaaacacc tggactggat      3180
     gggctacccc cagactggta taaatcacta aataaaataa tagccccccg acttctagag      3240
     accttccaag cagcctggga ctctcagtcn ytaccaccat cattccatga agcccttata      3300
     gtggtcatcc caaaatcagg ccgcgatcca accctttgta gttcatatcg cccaatatca      3360
     ctcataaaca ctgacgccaa aatattggca aaaatcctag ctaccagact tacccgggcc      3420
     atacaagatc taatacatcc agaccaatca ggcttcatgc caggtagggc gacggacttc      3480
     aacctccgtc gactcttyac taacctccaa ctcccacata ccaacaaagg atccagagtt      3540
     gtggcctcac tcgactccga gaaagccttc gactcggtgg agtggaacta cctctgggaa      3600
     gtgctccaca gatttggcct gggcaccaaa ttcatccaat gggttaaact gctctacaaa      3660
     tccccagtcg ctaaggttag ggtcaacaat ttcatctccc cccccttcca actccgcagg      3720
     ggaaccagac aagggtgccc cctatcaccg atcctctttg cactggcgat agaaccctta      3780
     gctattacaa taagggagtg tgcatccatt aaagggctcc agtttgccaa cataacagag      3840
     aaagtgtccc tcttcgcgga cgatatctta atatacttag cagacccctt agaatccctc      3900
     tccaccatgc taaccgttgt ccaagaattt ggcaaatact cgggacttcg tattaactgg      3960
     gaaaaatcac aactatttag cattgaccct accccccata tccctcctcc ccagcagaca      4020
     cagttgaaat gggtcacatc ctttaaatac ctggggatat ggatacaccc agacccccaa      4080
     ctctttctac aactcaattt agaccctata atggactccc tgtcacaagt tcttaagacc      4140
     tgggccaaac taccacttac actttgggga agagtgaaca tcatcaagat gatatatttg      4200
     cctaaattcc tgtatatatt ccacaacacc ccatttacaa tccctcgatc cttttttaaa      4260
     aaactaaaca gaactataac ttcatttatt tgggccaatg gtaccccccg tatttcctgg      4320
     gagaggctaa cagcaactgt cgaaaatgga ggcttagcct tgccacactt ctacttctac      4380
     tacctagcct cccaaatcta ctacatacac tggtgccttg ctcccaatcc gtataatccc      4440
     aatacacaac tccaagcatc catcctccac tcaatagaag gcctaagcac ctatccttat      4500
     agacaccaca cagatatgac caacctacca catacgctac tgaccccaca taaagcatgg      4560
     accacagcct tgaaaactat gcaccatcct tggccacttc tctcacccca actcccactc      4620
     tgggccaact cgctcctacc cgacctacag gaactacaag actacaccta ttggccacga      4680
     ctgggtttta agaaacttgg agacctaaca cttggtcctc agtttcccac ataccaagac      4740
     ctacaagaca gagccctggg aaagcagata caattttata gatacctcca acttaggcac      4800
     gcctttcacg cacaattcca cacccttcct cccacaataa ccacagtaac cttagaggac      4860
     atcctgctct ctccatctcc agccaaacta ctatccaggc tatataaaga gattatgaca      4920
     acaattaagc caccctttga tcgagcctac cgtctttgga cgcaagacat cccagaacta      4980
     gcacaagacc aatgggagga agccacagaa aatgcctata acttcctaat cccaataaag      5040
     gataggctca tacagtacaa atttctgcac caaacctaca taacacccct caaactgatg      5100
     agatttggga ggagacagga tgacctctgc ccaagatgta aatcccccgg ggccaacttc      5160
     tttcacatga tttggtcctg tccccccata cacgaattct ggtccaaaat aatggaaaca      5220
     ctagcaagtg aactgggtac accgcagata gtagacccaa taacttgcct gttaggagtc      5280
     atagatggaa tactatccac taacgtggcc agagttagac tgcgtacgct catgttctac      5340
     gccaaaaaaa cagtaattat gcactggatg ggagacaccc tcccctccca aacattctgg      5400
     agaaggctgg tggatggagc tcttcccctt atcaaattaa cctatgaaac aaggggtgca      5460
     tatgacaagt ttgacaagat ctgggaaaat tggtataatc aagacaatct ggacacatag      5520
     cctaccccct tacactaagt gtgactgacc cgacagaact aaacacaccc acctacactg      5580
     tgacaactac aatgcctagc aatagtaccc ttgtctgtat tggcctaaac ctgactcgac      5640
     accatttcaa tcttaatgtc aatatattaa acactgtttt gtatttttgt tttgtgatgt      5700
     tgtaaaacca ataaaaaatt tacctttaaa aaaaaaaaaa aaa                        5743
//
ID   TZSAT       repbase; DNA   ; VRT   ; 238 BP.
XX
AC   X56055;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Satellite; highly repetitive tandemly arrayed sequence.
XX
KW   SAT; Satellite; Simple Repeat; TZSAT; satellite DNA.
XX
OS   Tilapia zillii
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Labroidei; Cichlidae; Tilapia.
XX
RN   [1]
RP   1-238
RA   Franck P.J.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (04-OCT-1990). Franck
RL   J.P.C., Dept. of Biology, Dalhousie University, Halifax, Nova
RL   Scotia B3H 4J1, Canada.
XX
RN   [2]
RP   1-238
RA   Franck P.J., Wright M.J., McAndrew J.B.;
RT   "Genetic variability in a family of satellite DNAs from tilapia
RT   (Pisces: Cichlidae).";
RL   Genome 35(5), 719-725 (1992).
XX
RN   [3]
RP   1-238
RA   Franck J.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (17-JUN-1991). Franck J.,
RL   Department of Biology, Dalhousie University, Halifax, N.S.,
RL   Canada, B3H 4J1.
XX
DR   GenBank; X56055; Positions       1     238.
XX
SQ   Sequence 238 BP; 71 A; 48 C; 43 G; 76 T; 0 other;
     aattctataa ggcaaagcct taaatatctg tgtgcgagtc ttctatcaaa gttacagctg        60
     tctttatgca gttaatgaaa atcgctttct ttcgccaaga cagtgcgttt ctcgctatta       120
     catgcatttg aatggacttc tcgcctgaaa gaaagtatgg gatttccatt ttgtgaataa       180
     cttgaaaatc ttagctcaaa cagctgcaaa acctatttcc ccagcataag gaatgctg         238
//
ID   CR1-B2      repbase; DNA   ; VRT   ; 1233 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   CR1 Non-LTR Retrotransposon from chicken.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1-B2;
KW   CR1_GG.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-1233
RA   Smit A.F.;
RT   "CR1-B2 - CR1 Non-LTR Retrotransposon from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1233 BP; 293 A; 254 C; 414 G; 271 T; 1 other;
     ggccttctat gatggagtga cggcattggt ggacaaaggg aaggcgaccg atgtcattta        60
     cctggacttg agcaaggcct ttgacatggt cccccaccac atccttatct ccaaattgga       120
     gggatgtgga tttgatgggt ggaccacccg gtggataagg aattggttga aaggccgcag       180
     acagagggtg gtgattaatg gttctatgtc caggtggagg ccggtaacga gcggtgtccc       240
     ccaggggtct gtcttgggac cggtgctctt taacatcttt atcaatgaca tcgatgacgg       300
     aattgagtgc accctcagca agtttgctga tgacaccaag ctgagtggtg cggttgacac       360
     agtggaagga agggatgcca ttcagaggga cctcaacaga cttgaaaggt gggcccgggt       420
     gaatctaatg aggttcaaca cagcaaagtg caaggttttg cacttgggcc ggaggaatcc       480
     caggcatata tacagactgg aaggagcagt ccttgagagt agccctgcag agaaggacct       540
     gggggtcctg gtggatgaaa aacttaacat gagccagcag tgtgctcttg cagctcggaa       600
     agcaaatggt atcctgggct ccatcagaag aggggtggcc agcagggaca gggaggtgat       660
     tgtccctctc tactctgccc ttgtgaggcc ccatctggag tactgcgtcc aggtctggag       720
     cccccagtac aagaaagaca gggagctgtt ggagagggtc cagaggaggg ccacaaagat       780
     gatcagaggg ctggagcacc tcccctacga agacaggctg agggagctgg gcttgttcag       840
     cctggagaag agaaggctgc ggggtgacct cattgcagcc tttcagtacc taaagggagc       900
     ctataaacag gaggggagtc aactctttga aagggtagat aacagcagga caaggggaaa       960
     tggttttaag ttgaaggagg gaagatttag gttggatgtc agggggaagt tctttactat      1020
     gagagtggtg aggtgctgga acaggctgcc cagagaggtt gtggatgccc cgtccctgga      1080
     ggtgttcaag gccaggttgg atggggccct gggcagcctg gtctagtatt aaatgtggag      1140
     gttggtggcc ctgcctgtgg caggggggtt ggagnttcat gatccttgag gtcccttcca      1200
     acccgggcca ttctgtgatt ctgtgattct gtg                                   1233
//
ID   UB3_XL      repbase; DNA   ; VRT   ; 360 BP.
XX
AC   X65697;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Interspersed repeat; nonautonomous DNA transposon.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous;
KW   nonautonomous DNA transposon; T2-group; TIRs; UB3_XL.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-360
RA   Unsal K., Morgan T.G.;
RT   "A novel group of families of short interspersed repetitive
RT   elements (SINEs) in Xenopus: evidence of a specific target site
RT   for DNA-mediated transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248, 812-823 (1995).
XX
DR   GenBank; X65697; Positions    1952    2311.
XX
CC   Nonautonomous DNA transposon; 48 bp TIRs (TTAAAGGRR...); belongs
CC   to
CC   the T2-group [1]. TTAA target site. Experimental evidence of
CC   multiple copies [1].
XX
SQ   Sequence 360 BP; 91 A; 88 C; 91 G; 86 T; 4 other;
     ttaaaggaga actaaacccc ctgcatgtta agtccctact gcctcccctc tgtacagtct        60
     taccccagaa ttctgtccct cttcaatcag tgaccgcaca tgcagaatga gtgcattgga       120
     gctcacaggc agccatcttc tncccttcgg caatcttcgt gaagtgagcg gcataatgtc       180
     gcagtttgag aaatcttacg ggttcgtgac aactgtgcat tcgccgaaag agacagaaat       240
     tgccaaannn gaggaaggag acgcgaagat taaagaagat ggtgcccgtg agctccactg       300
     cagctcactt gggggggaca gtggggactt aacatcgtgg ggggtttagt tctcctttta       360
//
ID   Kronos_LTR  repbase; DNA   ; VRT   ; 476 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 2)
XX
DE   Gallus gallus Kronos LTR retrotransposon, consensus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; GGERVL-B;
KW   GGLTR3F1; GGLTR3F2; Kronos_LTR; LTR; Gypsy-like; retrotransposon.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-476
RA   Smit A.F.;
RT   "GGERVL-B retrotransposon LTR sequence.";
RL   Direct Submission to Repbase Update (SEP-2004).
XX
RN   [2]
RP   1-476
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 476 BP; 105 A; 119 C; 102 G; 150 T; 0 other;
     tgtcatggtt ttgtaatttt gctattggta ttccacatca taacatcatg gacaaaagag        60
     aagaagaact acgtatccca gaggacctca cggtcagaga aggaagatac atcacggaag       120
     atacgtcatc tggttgcgcg cggtcttttt cactttcgct tgctgccagg gagaggagtg       180
     ggtgtgcttc caagccgtgc gccttcatca agtagggctt tcggtttcgg aaactctctc       240
     actctctctc tctatcgctc tttcgctctc tctcatttca tttgatttat tatccttact       300
     tccaattaga ttgtattata tcgtgtcatc ttgcattcca acatcgtagt tagtaaaata       360
     agttctcctt cttagatcgt tgccgctgct ccgttttttt tcgggaagcc aggggggccc       420
     gcgagcctac tgcccccctg tcacgggcac agatctatct agataactcc gtgaca           476
//
ID   PSLINE      repbase; DNA   ; VRT   ; 4480 BP.
XX
AC   AB005891;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Platemys spixii retrotransposon CR1-like LINE, complete sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; LINE; ORF1;
KW   ORF2; PSLINE; retrotransposon.
XX
OS   Platemys spixii
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Testudines; Pleurodira; Chelidae; Platemys.
XX
RN   [1]
RP   1-4480
RA   Okada N.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (19-JUL-1997). Norihiro
RL   Okada, Tokyo Institute of Technology, Faculty of Bioscience and
RL   Biotecnology; 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa
RL   226, Japan (E-mail:mkaji@bio.titech.ac.jp, Tel:81-045-923-1136,
RL   Fax:81-045-923-1136).
XX
DR   GenBank; AB005891; Positions       1    4480.
XX
SQ   Sequence 4480 BP; 1237 A; 814 C; 1367 G; 961 T; 101 other;
     agtgagctgc gaacaragga gaggcaaaca gaaggagttt gcctgggatc tgtccgagag        60
     gagcccaggt gagtgctacg tgaggggagc tgtgttgtgt gctagagggg tgagtatctg       120
     agagaccatt tgtttgactg gtgcaagtta cagctgactg tgtgtgtgat tgtgactggt       180
     gcagttacag ggactgtttg rcagttgacc gtgtgtgtga ttgattgaaa agtgtgaatt       240
     gggagtgctt tgttccaggt rggccttgag tggttgattg cagagggagg cactgagccg       300
     gggcaactgc ttcgagtcag cagccttata agaagcagcc agttgcgaac caagtgagct       360
     gcgaacagag gagaggcaaa cagaaggagt ttgcctggga gttcaccttg ggggagagcc       420
     cayagcgggt ttttgccttt cagacttagc tgagcagtaa atacagcatc tgaagaggct       480
     ctcagaggaa agatatggaa agtgagcgat ctgctgttgt cacctgcact ggatgtgcta       540
     tgtttgtctt yctcccacag gayagarccg acttcatctg tacgaagtgc aggctggttt       600
     ccatattgga agagaaggtt aaaggactrg agacccaart atcaaccctg cgttgcatta       660
     aagaaaatga rgtctttctc gatcgaagwc atgatttgtt actacaggca cagtgtgagg       720
     aagattcaga gaaggcartg caggggarac tgargaatgg agaagrraat tggcagcatg       780
     tgacctcccg aagwaagaga acccatakgc ccaccgtgca gatagaggta aggaatcgtt       840
     ttcaggctct ctgcacaggt amtackgcgg agaatgattt gcaagactca tctgagggaa       900
     tggatcagaa rgagrccctg ttgatcagaa ggcawgggat gcattgtcct agggatgggg       960
     gttccacgac caccactccc aagaggaaga gaagggtgrt ggtggtcggg gactccctcc      1020
     taagggggac ggartcatcc atctgccgtc cggaccggga aactaragaa gtgtgctgct      1080
     tgcctggagc tagrattcag gatgtgacgg agagwctgcc gagactyatc aagccctcag      1140
     actgctamcc cttcctactt ctccacgtgg gcaccaatga cactgccaag aatgaccttg      1200
     agcggaycac tgcagactat gtggctctgg gaagaaggat aaaggagttt gaggcgcaag      1260
     tggtgttctc gtccatcctc cctgttgaag gaaaaggccc aggtagggac cgtcgmattg      1320
     tggaagtaaa tgcgtggtta cgcaggtggt gtcggagaga gggctttgga ttcttcgayc      1380
     atgggatgtt gttccaggaa gaaggattrc taggaagaga cgggattcac ctaacgaaga      1440
     gagggaagag tatcttcgca gacaggctgg ctaacctagt gaggagggct ttaaactagg      1500
     ttcgatgggg gatggagacc taagcccgra ggtaagtggg gaagtgggac accasragga      1560
     agcagaagga ggagggtgca acaggggagg cctcctgatt cgtactgaga aagtagggca      1620
     atcggctagt tatctyargt gcctgtacac aaacgcaaga agcctgggaa acaagcagga      1680
     ggaattggaa gtcctggcac agtcacggaa ctatgacatg attgraawaa ctgagacttg      1740
     gtggaataac tcacacgact ggaacactgt catggatggg tataagctrt tcaggaagga      1800
     caggcagggg cgaaagggtg gaggagttgc actgtatgta agagagcact atgattkctc      1860
     tgagctccag tgtgaaactg gagatacgcc agttgagagt ctctgggtta agcttagaag      1920
     caagaacaat aagggtgatg ttgtggtggg tgtctgttat agacyaccag accaggagga      1980
     tgaggtagat gaggctttct tcagtcaact agggaaagtt tccagttcac aggacctgat      2040
     tctcatgggg gacttcaatc accctgacat ctgctggaag agcaatacag cagagcacaa      2100
     acaatccagg aagtttttgr agwgtgttgc ggacaacttc ctggtgcaag tgctggagca      2160
     accaactagg ggccgtgcts ctcttgacct gctgctcaca aacagggaag atttggtagg      2220
     ggaagtagaa gtgggtgrca acctaggcag cagtgaccat gagatggtcg agttcaggat      2280
     cctgacaaaa ggaagaaagg agaacagcag gatacggacc atggacttca gaaaagcaga      2340
     ctttgactcc ctcagggagc tgatgggcag gatcccctgg gaggctaata tgagrgggaa      2400
     aggaatccaa gggrgctggc tgtattttaa agaaacctta ttgagggcgc aggaacaaac      2460
     catcccgatg tgcagaaaga atagcaaata tggyaggcga ccagcttggc ttaacaraga      2520
     artcttcggt gagcttaaac acaaaaaaga agcttacaag aagtggaagc ttggwcagat      2580
     gactagggag gaktataaaa atactgctcg aacatgcagg artgaaatca ggaaggccaa      2640
     agcacaattg gagttgcagc tagcaaggga tgtgaagggk aacaagaagg gtttctacag      2700
     gtatgttagc aacaagarga agrtyaggga aagtgtgggc cccttacaga atgggggagg      2760
     caacctagtg acagakgatg tggaraaagc tgargtactc aatgcctttt ttgcctctgt      2820
     cttcacagac aaggtcagct cccagactac tgcactgggc ggcacagwat ggggaggagg      2880
     tgaacakccc tcagtgctga aggaacaggt tcargactat ttagaaaggy tggacatrca      2940
     caagtccatg gggcmrgatg caatscaycc gagggtgctg agggagttrg ctgatgtgat      3000
     tkcagagcca ttggcyatta tctttgaaar ctcgtggcga ttgggrgagg tccctgatga      3060
     ytggaaaaag gcaaatatag tgcccatctt yaaraaaggg aagaargagg atccagggaa      3120
     ctacagaccg gtcagcctca cctcartccc tggaaaaatc atggarcagg tcctcaagga      3180
     atccatttta aggcacttrg aagagaggaa ggtgatcagg arcagtcarc atggattcac      3240
     caagggcaag tcatgcctga ccaacctgat tgctttctat gaagaggtga ctggctctgt      3300
     ggatgtgggg aaagcggtgg acgtgatata ccttgacttt agcaaagctt ttgatacagt      3360
     ctcycacagt attcttatca gcaagttaaa raagtatggg ttggatgaat ggactataaa      3420
     atggatagag aaytggctag akcatagggc tcaacgagta gtgatcaatg gctccatgtc      3480
     tagctggcag ccggtcacaa gtggagtgcc ccaggggtcg gtcctggggc cggttttgtt      3540
     caacatcttc attaatgatc tggaggatgg ggtagattgc accctcagca agtttgcaga      3600
     tgacactaag ctagggggag tggtagatac cctggaaggk agggatagga tacagaagga      3660
     cctaaacaaa ttggaggatt gggccaaaag aaatctgatg aggttcaaca aggacaagtg      3720
     cagagtcctg cacttaggat ggaagaatcc catgcacagc tacagactgg ggaccgacga      3780
     gttaggcagc agttctgcag aaaaggatct gggggttaca gtggataaga agctggatat      3840
     gagtcaacag tgtgccctgg ttgccaagaa ggctaatggc atattgggct gcattagtaa      3900
     gagcattgcc agcagatcga gggaagtgat tattycccts tattcggcat tggtgaggcc      3960
     gcatttggag tattgtgtcc agttttgggc cccccactac aaaaaggatg tggamaagtt      4020
     ggagagagtc cagcggaggg caacaaaaat gatwaggggg ctggarcaca agacttatga      4080
     ggagaggctg aaggaactrg gcctgtttag tctgcagaag agaagaatga ggggggattt      4140
     gatagcagcc tttaactacc tgaaaggggg ttccagggag gatggagcta ggctgttytc      4200
     agtggtggca gatgacagaa caaggagcaa tggtctcaag ttgcagtggg ggaggtctag      4260
     gttggacatt aggaaaaagt ttttcactag gagggtggtg aagcattgga atgggttacc      4320
     tagggaggtg gtggcatctc catctttaga ggtttttaag ctgcggcttg acaaaaccct      4380
     cgctgggatg atttagctrr ggttrgtcct gctttgagca gggggttgga ctagatgacc      4440
     tcctgaggtc ccttccaact ctaatattct atgattctat                            4480
//
ID   LINE2_CH1   repbase; DNA   ; VRT   ; 661 BP.
XX
AC   .
XX
DT   28-MAR-2002 (Rel. 7.02, Created)
DT   28-MAR-2002 (Rel. 7.02, Last updated, Version 1)
XX
DE   Crotalus horridus non-LTR retrotransposon LINE2 reverse
DE   transcriptase pseudogene - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; LINE;
KW   LINE2_CH1; retrotransposon.
XX
OS   Crotalus horridus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Viperidae; Crotalinae; Crotalus.
XX
RN   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol 18(12), 2213-2224 (2001).
XX
RN   [2]
RP   1-661
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_CH1: non-LTR retrotransposon LINE2 reverse transcriptase
RT   pseudogene from Crotalus horridus.";
RL   Direct Submission to Repbase Update (12-MAR-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 661 BP; 125 A; 178 C; 190 G; 167 T; 1 other;
     gacctctcag cagcttttga taccatcgat catggtatcc ttttgcgacg acttggaggg        60
     gtgggagtgg gaggcaccgt tttacggtgg ttctcctcct acctctctgg ccggtcgcaa       120
     tcggtactgg tgggggggca gaggtcaacc ccgaggcccc ttgaatgcgg ggtgccgcag       180
     gggtcggtcc tctcccccct cctatttaac atttacatga agccgctggg tgagatcatc       240
     agacagcacg gggtgaggtt tcatcagtat gctgatgata cccagctata tatctcttcc       300
     ccgagctctc tcagtgaagc ggctgatgtg atgggccgtt gccttgaagc cgtgagggtc       360
     tggatggggg ttaacagact caggctcaat cctgacaaga ccgagtggct ttggatgttg       420
     cctcccaagg atcatgttaa ctgtccagtg ttgactctag caggggaaaa tataccccct       480
     tcggagcggg ttcgcaactt gggtgtcctc cttgatccac agctgaaatt ggaacatcat       540
     ttgacggctg tggctgggag gacctttgca caagttcgtc tgttgcacca gttgcgaccc       600
     tacctggacc gggaggctct ccttacagtc actcatgccc tygtcacctc acgcctggac       660
     t                                                                       661
//
ID   GGLTR10C1_LTR repbase; DNA   ; VRT   ; 364 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV2 Endogenous Retrovirus from chicken.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; GGLTR10B_LTR;
KW   GGLTR10C1_LTR; LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-364
RA   Smit A.F.;
RT   "GGLTR10C1_LTR - ERV2 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   LTRs of GGERVK10 GG000020, GG000059, GG000012 bp 204-291 matches
CC   the core of GGLTR1 (the LTR of GGERVK1), 1-3% div.
XX
SQ   Sequence 364 BP; 105 A; 64 C; 106 G; 88 T; 1 other;
     tgtagtaggc gtcttgcggg gctacgggat gtacgggaca ggcctctccc taagcataga        60
     gagacagtgc tatcgtgctg accttgatgc agagaaaaca ggagaagaag aaggatgaga       120
     aaagaatgtg gaaacggcca aataaggcac aatgttatct ggtgtgaacc aatcagagtg       180
     ggacatgaca gcacggtttt gtaggtaaaa atgtatataa gctgtgttta gtagtgaata       240
     aacgccattt tgctgctcat catattggtg tgtgtctgca gtcatttggc cctgatcagg       300
     ctattggtca gtgcgtgcag aggcctaaca caggtggcta acatcgttgt tgcngaaagc       360
     aaca                                                                    364
//
ID   HER_LINE    repbase; DNA   ; VRT   ; 1581 BP.
XX
AC   .
XX
DT   27-FEB-2002 (Rel. 7.01, Created)
DT   27-FEB-2002 (Rel. 7.01, Last updated, Version 1)
XX
DE   Scyliorhinus HER LINE element - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; HER_LINE.
XX
OS   Scyliorhinus torazame
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
OC   Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea;
OC   Carcharhiniformes; Scyliorhinidae; Scyliorhinus.
XX
RN   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs.";
RL   Mol. Biol. Evol 16(9), 1238-1250 (1999).
XX
RN   [2]
RP   1-1581
RA   Jurka J.;
RT   "HER_LINE consensus sequence.";
RL   Direct Submission to Repbase Update (24-JAN-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1581 BP; 410 A; 251 C; 488 G; 427 T; 5 other;
     gaattctttg aggaggtgac caagcatgtg gatgaaggta aagcagtgga tgtagtgtac        60
     atggatttta gtaaggcatt tgataaggtt ccccatggta ggcttatgca gaaagtaagg       120
     aggcatggga tagtgggaaa tttggccagt tggataacga actggctaac cgatagaagt       180
     cagagagtgg tggtggatgg caaatattca gcctggatcc cagttaccag tggtgtaccg       240
     cagggatcag ttctgggtcc tctgctgttt gtgattttca ttaatgactt ggatgaggga       300
     gttgaagggt gggtcagtaa atttgcagac gatacgaaga ttggtggagt tgtggatagt       360
     aaggagggct gttgtcggct gcaaagagac atagatagga tgcagagctg ggctgagaag       420
     tggcagatgg agtttaaccc tgaaaagtgt gaggttgtcc attttggaag gacaaatatg       480
     aatgcggaat acagggttaa cggtagagtt cttggcaatg tggaggagca gagagatctt       540
     ggggtctatg ttcatacatc tttgaaagtt gccactcaag tggatagagc tgtgaagaag       600
     gcctatggtg tgctcgcgtt cattaacaga gggattgaat ttaagagccg tgaggtgatg       660
     atgcagctgt acaaaacttt ggtaaggcca catttggagt actgtgtaca gttctggtcg       720
     cctcatttta ggaaggatgt ggaagctttg gaaaaggtgc aaagaagatt taccaggatg       780
     ttgcctggaa tggagagtag gtcttacgag gaaaggttga gggtgctagg ccttttctca       840
     ttagaacgga gaaggatgag gggcgacttg atagaggttt ataagatgat caggggaata       900
     gatagagtag acagtcagag actttttccc cgggtggaac aaaccattac aaggggacat       960
     aaatttaagg tgaaaggtgg aagatatagg agggatatca gaggtaggtt ctttacccag      1020
     agagtagtgg gggcatggaa tgcactgcct gtggaagtag ttgagtcgga aacattaggg      1080
     accttcaagc agctattgga taggtacatg gattacggta aaatgatata gtgtagattt      1140
     atttgttctt aagggcagca cggtagcatt gtggatagca caattgcttc acagctccag      1200
     ggtcccaggt tcgattccgg cttgggtcac tgtctgtgcg gagtctgcac gtcctccccg      1260
     tgtctgcgtg ggtttcctcc gggtgctccg gtttcctccc acagtccaaa gatgtgcrgg      1320
     ttaggtgaat tggccaatga taaattgccc ttaatgtcca aaattgccct tggtgttggg      1380
     tggaggtgtt gagtttgggt agggtgctct ttccaagagc cggtgcagac tcaaagggcc      1440
     gaatggctcc ttctgcactg taaattcaat gataatctat gattaatcta ggacaaaggt      1500
     tcggcacaac atcgtgggcc gaaggcctgt tctgtgctgt attttctatg ttctatgttc      1560
     tatgtrycgc cacwktctgc c                                                1581
//
ID   LINE2_EC1   repbase; DNA   ; VRT   ; 653 BP.
XX
AC   .
XX
DT   28-MAR-2002 (Rel. 7.02, Created)
DT   28-MAR-2002 (Rel. 7.02, Last updated, Version 1)
XX
DE   Echis coloratus non-LTR retrotransposon LINE2 reverse
DE   transcriptase pseudogene - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; LINE;
KW   LINE2_EC1; retrotransposon.
XX
OS   Echis coloratus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Viperidae; Viperinae; Echis.
XX
RN   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol 18(12), 2213-2224 (2001).
XX
RN   [2]
RP   1-653
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_EC1: non-LTR retrotransposon LINE2 reverse transcriptase
RT   pseudogene from Echis coloratus.";
RL   Direct Submission to Repbase Update (12-MAR-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 653 BP; 122 A; 162 C; 153 G; 166 T; 50 other;
     tagacctctc agcagcttyt gataccatcg aycatrgtat cctgctgcaa crrctcaagg        60
     ggttgggagt gggaggcact gttttacggt ggttgtcctc ctayytcttg kgctgttcrc       120
     agtttgtayt sgcaggggga caragatcta ccccraggcc cctcacttgt ggrgtccctc       180
     ccccctcctg gttaacatct atatgaagcy rctgggtgag atcatctgtg gctttkgggg       240
     tgaartatca cyaatatgys gatgataccc agttrttcat ctccacccca agccaammca       300
     gtgatgccct tgacatgatg tcccrgtgcc tggagrtggt gcgggtctgg atggaaarga       360
     caggctcagg ctcaacccct ccaakacyra gkggctrtgg atccggcatc tcrkgttgtc       420
     camcwagttc catctctttt aatggtgggg aggtattgmc cccttcagaa agggctcaca       480
     acttgggtgt cctcctgkat tcatggctma atttgraaga tcatttaatg gcygtgacca       540
     gragggcctt crcacaggty tgcctagtgc accagttrta ccccttyttg gayggagatg       600
     cctatgcacr gttactcatg ccctcgtcac ywtcttgcct ggactactgc aat              653
//
ID   POR         repbase; DNA   ; VRT   ; 307 BP.
XX
AC   .
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Interspersed repeat POR.
XX
KW   hAT; DNA transposon; Interspersed Repeat; Non-autonomous;
KW   hAT superfamily; nonautonomous DNA transposon; POR; TIR.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RA   Deen M.P., Terwel D., Bussemakers J.M., Roubos W.E.,
RA   Martens J.G.;
RT   "Structural analysis of the entire proopiomelanocortin gene of
RT   Xenopus laevis.";
RL   Eur. J. Biochem 201, 129-137 (1991).
XX
RN   [2]
RP   1-307
RA   Kapitonov V.V., Jurka J.;
RT   "POR.";
RL   Direct Submission to Repbase Update (APR-1997).
XX
CC   [2] (Consensus)
XX
CC   POR is a putative nonautonomous DNA transposon flanked by 15 bp
CC   TIRs [1,2] and by a 8 bp target site duplication [2],
CC   characteristic of the HAT superfamily of DNA transposons.
XX
SQ   Sequence 307 BP; 78 A; 68 C; 79 G; 69 T; 13 other;
     cagggrtccc caaccttttk wacccrtgag cmacattcag atgtaaagag ttggggagca        60
     acacaagcat gaaaaaagtt cctggggntg ccaaataagk gctgtgattg gctatttggt       120
     agcccctatg tggactggca gcctacagga ggctctgttt ggcagtrcay ctggkttttt       180
     atgcaaccaa aacttgcctc caagcctgga attcaaaaat aagcacctgc tttgaggcca       240
     ctgggagcaa catccaaggg gttggwgagc aacatgttrc tcaygagcca ctggttgggg       300
     atcactg                                                                 307
//
ID   CASAT1      repbase; DNA   ; VRT   ; 107 BP.
XX
AC   Z35437;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Satellite DNA; repeat region.
XX
KW   SAT; Satellite; Simple Repeat; CASAT1; satellite DNA.
XX
OS   Coragyps atratus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Ciconiiformes; Cathartidae;
OC   Coragyps.
XX
RN   [1]
RP   1-107
RA   Keyser K.C., Montagnon M.D.;
RT   "Satellite DNA of Coragyps atratus.";
RL   Unpublished.
XX
RN   [2]
RP   1-107
RA   Keyser K.C.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (21-JUL-1994). Keyser
RL   C.K., Institut de medicine legale, 11, rue Humann, Strasbourg,.
XX
DR   GenBank; Z35437; Positions       1     107.
XX
SQ   Sequence 107 BP; 23 A; 27 C; 36 G; 21 T; 0 other;
     ggccgtgaag tttggcggct agagaagcgc aaagccccac tgttgcttcg cctgtgaaag        60
     cggttccaag gaagggtgct ggctagcaac agctttcaga gctggcc                     107
//
ID   SSSINESAT   repbase; DNA   ; VRT   ; 217 BP.
XX
AC   L77085;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Salmo salar (clone cSSML032) DNA, SINE repeat region.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SSSINESAT;
KW   Repeat region; retroposon.
XX
OS   Salmo salar
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Salmo.
XX
RN   [1]
RP   1-217
RA   Lundin M., Mikkelsen B., Syed M.;
RT   "Identification of a Salmo salar SINE, homologous to a Salvelinus
RT   namaycush AluI satellite sequence.";
RL   Unpublished (1996).
XX
DR   GenBank; L77085; Positions     220     436.
XX
SQ   Sequence 217 BP; 73 A; 66 C; 36 G; 42 T; 0 other;
     aaggaacaca aaggcaacct gcctaaatga ctacagaccc gtagcactca tgtccgtagc        60
     catgaagtgc tttgaaaggt tggtaatggc tcacatcaac accattatcc caagaaacca       120
     tagacccact ccaatttgca taccgcccaa acagatccac agatgatgca atctctattg       180
     cactccacac tgccttccac ctggacaaaa ggaacac                                217
//
ID   MSPI_TV     repbase; DNA   ; VRT   ; 197 BP.
XX
AC   X14156;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Triturus vulgaris MspI highly repeated centromeric DNA, clone
DE   pTvm5.
XX
KW   Satellite; Simple Repeat; MSPI_TV; MspI repeat.
XX
OS   Triturus vulgaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Caudata; Salamandroidea; Salamandridae;
OC   Triturus.
XX
RN   [1]
RP   1-197
RA   Cremisi F., Vignali R., Batistoni R., Barsacchi G.;
RT   "Heterochromatic DNA in Triturus (Amphibia, Urodela).";
RL   Chromosoma 97, 204-211 (1988).
XX
DR   GenBank; X14156; Positions       1     197.
XX
SQ   Sequence 197 BP; 51 A; 51 C; 38 G; 57 T; 0 other;
     ccgggtcagc tgagcagcga atttctattt aaccacctgc tttcatgaga gacctcaggg        60
     ctgcatgttt tgagcccagt actgagcctg aaaagcattt ccaaccccac ttacaagtaa       120
     aactagctaa aatgtgcctg gcttctcttc actgaaaagc tcattctgag tacattttta       180
     gcatacgttt gctcctg                                                      197
//
ID   GYPSOL_I    repbase; DNA   ; VRT   ; 4571 BP.
XX
AC   BA000027;
XX
DT   29-JUN-2005 (Rel. 10.06, Created)
DT   07-JUL-2005 (Rel. 10.06, Last updated, Version 1)
XX
DE   Internal portion of gypsy-like element.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; GYPSOL_LTR.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-4571
RA   Matsuo M.Y., Asakawa S., Shimizu N., Kimura H., Nonaka M.;
RT   "Nucleotide sequence of the MHC class I genomic region of a
RT   teleost, the medaka (Oryzias latipes).";
RL   Immunogenetics 53(10-11), 930-940 (2002).
XX
DR   Genbank; BA000027; Positions   17845   22415.
XX
CC   This is a relatively new element. LTRs are 100% identical
CC   and ORF appears to be intact.
XX
FH   Key           Location/Qualifiers
FT   CDS           3..4535
FT                 /product="GYPSOL_I_1p"
FT                 /note="LReO_3"
FT                 /translation="MTRGKKTETPDLPLDDDKATSSHQEGAAAPDEPDKLE
FT                 ELTTLVKTLVQSQASRDKLVEKESARQDQRWKNLQHQFQMLQTQVKELKDD
FT                 FETRAEQEDDDDDDVGEGADDVQLAMPTSCGPVPPTQRGPILQKQPKILPL
FT                 SPEDDIEHYLMTFERIATVCRWPKEEWAIQLIPLLTGKARSAYVLMDFDDS
FT                 EDYEKVKEVILAKYEITAETYRKRFRALDINPGETPRELYVRLRELFNKWV
FT                 KPEACTVKEISEKLILEQFLRMMNPEMEIWIRERDPQSAEEASRLAEVFLS
FT                 ARSGRGRPNFGRDSYFSGRSKSYAGERGGQTHSRMHNSPRQFSAKAKESRR
FT                 SFSSSKQNVRCYQCNEIGHTQYTCPATRQNPPSLLCTVPRPSQPVQVQKEV
FT                 VTVPVLINGQRKEALLDSGCFKSVVLESLVPRDLWNEATATIGCVHGDEKA
FT                 YRTAEVYLTIDGQTYLMPVVLVPELPFSVILGRDVPLLFDLIQQAHAKMDG
FT                 GVCETSVQAQRKPVGSDHQHAVSLCNIVTTRANAARNLLEELPFHNTELEI
FT                 SPVKVRKSRAQRRREKFLATVETQCDDEKQPSHVLDFQVPADIAALQRADP
FT                 RLKVWFDKVSEIEGQKTGRVECLTDKIYLIKNGILYQRHGTVEALALPQCF
FT                 SKKVMGIGHSIPWAGHLAFQKSLNRIANRFVWPAMYTQLKEFCASCEICQL
FT                 TAPQGVARAPLQPLPLIETPFDRIGMDIVGPLEKSSSGHKYILVICDYATR
FT                 YPEAFPLRSVKARQIANCLIQLFSRVGIPKEILTDCGTNFLSKLLKQVYSL
FT                 LGVKGIKTTPYHPQTDGLVERFNQTLKTMLRKFVSETGADWDQWLPYLLFA
FT                 YREVPQASTGFSPFELLYGRQVRGPLDLLKDYWEKPVTDKDNVVSYVLKMR
FT                 ERLERMSTLAQEHMRSAQAQQKTWYDKKARDRIFQVGQQVLLLLPTSDNKL
FT                 LARWQGPYSITKRLGEVTYELYMPEKLKKHQRFHVNLLKEFQLPASNKQEC
FT                 NQTLFIRVADDDEEEREKLFPHEEMASSPVDVSHLQPDRQREVGRLLDAEL
FT                 FKETPGFTTLVQHKVHLKEDAVPRRRYYRIPERLVVKLEKEIELMLKLGVI
FT                 EPSTSEWCSPVVLVPKKDGSLRFCIDFRYLNAVSKIQSYPMPRIDELLERV
FT                 GKSKFITTLDLSKGYWQVALAQETKELTAFTTPYGKFQFKVMPFGLQGAPA
FT                 TFQRLMDEILRDFPQFAAAYLDDVIIFSHSWRDHMSHLRHVLHLIKAAGLT
FT                 INPGKCVVAQQQVEYLGHVVGQGLVKPRVGKVEAIQEYQIPTTKKKVRAFV
FT                 GLVGWYSKFIPHFADRAAVLTDLTRASAPNKVVWTEDCDAAFRDLKGAITS
FT                 ESVLYSPDFTRPFILQTDASAVGLGAVLVQEAEGERHPVLFLSRKLLDRET
FT                 RYSTVEKECLAMKWAIDSLRYYLLGRHFCLETDHRALQWLRRMKDSNTRLT
FT                 AWYLSLQAYDFTVQYRAGKTNCVADCLSRVHEN"
XX
SQ   Sequence 4571 BP; 1335 A; 976 C; 1139 G; 1121 T; 0 other;
     agtggtgtca gaagcaaaca attaaatgca cagtgcagaa aatgacaaga ggaaaaaaga        60
     ctgagacccc tgatcttcct ttggatgatg ataaagccac ctcatctcac caggaaggag       120
     cagctgctcc agatgaacca gataaattgg aggagttgac tactctggtg aagactctcg       180
     tccaatctca ggcatccaga gataaactgg tggaaaagga gtctgcacgc caagaccaaa       240
     gatggaaaaa cctccagcat caatttcaga tgctccaaac acaagtaaaa gaattaaaag       300
     atgattttga gaccagagcg gagcaggagg atgatgatga tgatgatgtt ggagaagggg       360
     ctgatgacgt gcagcttgct atgccaacca gctgtggacc tgtcccaccc acacaacggg       420
     gaccaatact gcaaaaacaa cccaagatct taccactttc gcctgaagat gacatcgaac       480
     actatctcat gacattcgaa aggatagcta ctgtttgccg ctggcctaaa gaggaatggg       540
     ctattcagct catcccattg ctcacaggta aagcacgaag tgcatatgtg cttatggatt       600
     ttgatgactc tgaagactac gagaaggtca aagaagtaat tctggccaaa tatgagatca       660
     cggcagagac atacaggaaa agatttcgtg ctttggacat caatcctgga gagaccccac       720
     gtgaactcta tgtgcgcctg agggaacttt tcaacaaatg ggtgaaaccg gaagcctgca       780
     ctgtgaaaga gatttctgag aagttaatcc tggagcagtt tcttcggatg atgaacccag       840
     aaatggaaat ttggattcgt gaaagagatc cacagtctgc agaagaggct tcacgtctag       900
     cagaagtttt tctatcagct agaagcggga gaggaagacc taactttggc cgtgacagct       960
     acttctctgg gcggagtaag tcttatgcgg gtgaaagggg tggtcaaaca catagtagaa      1020
     tgcataatag ccccaggcaa ttttcagcta aagccaagga gagcagacgt tcattttcta      1080
     gttctaagca gaatgtccgc tgttatcaat gtaatgaaat aggccacacc cagtatactt      1140
     gtcctgccac tagacaaaat ccaccttccc tgctatgtac agtgcctaga ccctctcagc      1200
     cggttcaggt ccagaaagaa gttgtgacag tacctgtatt gattaatggt cagagaaaag      1260
     aggctttgct agactctggt tgctttaaat cggttgttct ggagagtctg gttccaagag      1320
     atttatggaa tgaagctact gctaccatcg gttgtgttca tggtgatgag aaagcgtatc      1380
     gtactgctga agtttatcta actatagatg gtcaaactta tctcatgcca gtagtccttg      1440
     tgccagagct gcctttttct gttatattgg gtagagatgt acctttgctt tttgatttaa      1500
     tacaacaagc gcatgcaaag atggatggag gtgtttgtga gacatctgtt caggctcaga      1560
     ggaagccagt tggatcagat catcagcatg cagtttctct ttgcaatata gtaacaacaa      1620
     gagcaaatgc agctagaaat ctacttgagg agcttccttt tcacaacacc gagttagaaa      1680
     tatctcctgt gaaagtgcga aaatctagag ctcagagaag aagagaaaag ttcttggcta      1740
     cagttgaaac acagtgtgat gatgagaaac aacccagcca cgttttggat ttccaagttc      1800
     cagctgatat agctgctctc caaagagctg accccagact taaagtatgg tttgacaaag      1860
     tctcagaaat agaagggcag aagaccggta gagtagagtg tctgacagat aagatttatc      1920
     tgattaaaaa tggcatcctt taccaacgtc atggaacagt tgaagcctta gcactgccgc      1980
     aatgtttttc aaagaaagtt atggggattg gtcattccat cccatgggct ggtcacttag      2040
     ctttccagaa gtcactcaac agaatagcta ataggtttgt ttggcctgct atgtataccc      2100
     agttaaagga gttctgtgct tcatgtgaaa tatgtcagtt aacagcacca cagggagttg      2160
     cccgggctcc actccagcct ttaccactta ttgagacccc ctttgacaga ataggcatgg      2220
     acatagtggg gccacttgag aaaagttcat caggtcataa atacattttg gttatttgtg      2280
     attatgccac acgttacccg gaagcttttc ccctgagatc agttaaagca agacaaatag      2340
     caaactgcct tattcaactg ttctccagag tgggcatacc aaaagagatt ctgacagact      2400
     gtggcaccaa cttcctttcc aaactgttaa aacaagtgta tagtctgcta ggagttaagg      2460
     gcattaagac caccccatac cacccccaga cagatggact ggtcgaaaga ttcaatcaaa      2520
     ccctgaaaac catgctacgc aagtttgtgt cggagacagg cgcggactgg gaccaatggc      2580
     tgccttatct tttgtttgca taccgggaag tgccacaagc atcaacaggt ttttcacctt      2640
     ttgaacttct ttatggtcgc caggtcagag gaccacttga tctcctcaaa gattactggg      2700
     agaagccagt gacggataaa gacaatgtgg tgtcctacgt cctgaagatg agagagaggc      2760
     ttgaaaggat gagtacgttg gcacaagaac acatgaggtc agcacaagca caacagaaga      2820
     cgtggtatga caagaaagcc agagatagaa ttttccaggt tggtcagcag gtgctgttgc      2880
     tcctccccac cagtgacaat aagctgttgg ccagatggca gggtccttac agcatcacca      2940
     aacgtttggg tgaggtcacc tatgaacttt acatgcctga aaaattaaaa aaacatcagc      3000
     gcttccatgt aaatctgttg aaggagtttc agctaccagc atcaaacaag caggagtgca      3060
     accagacact ctttatccgg gtggctgatg atgatgagga ggagagggag aagttgtttc      3120
     cacatgaaga aatggcatcc agccctgtcg atgtgtcaca tctccaaccg gatcggcaga      3180
     gggaggtggg gcgattatta gatgcagaac ttttcaagga gacaccagga ttcaccacac      3240
     tggttcagca caaggttcac ctgaaggaag atgcagttcc ccgtcgaagg tactacagaa      3300
     ttccagaacg tttggttgta aagctcgaga aggagattga actgatgttg aagctgggcg      3360
     tcattgagcc atcaaccagt gagtggtgca gtcctgttgt gttggtccca aagaaggatg      3420
     gatcactgag attttgcatt gatttcagat atctaaatgc agtatcaaag atccagtcat      3480
     acccgatgcc acgaatagat gaactgttgg agagggttgg aaaatcaaaa ttcatcacta      3540
     cgctcgactt gagtaaaggc tactggcaag tggcacttgc acaagagacc aaggagctga      3600
     cagcatttac aacaccttat ggcaagtttc aattcaaggt gatgccattt ggtctccagg      3660
     gggcaccagc gacatttcag aggctcatgg atgagattct gagagatttt ccccagtttg      3720
     cagcggcata tctggatgat gttataattt tcagccactc ctggcgggac cacatgtctc      3780
     atctgcgcca tgttctccat ctaataaaag cagcgggact gacgatcaac ccaggcaaat      3840
     gtgtcgtggc ccaacaacag gtcgagtatc tgggccatgt tgtgggtcag ggtctggtga      3900
     aaccacgtgt tggcaaagtg gaagccattc aggaatatca gatacccaca accaagaaga      3960
     aagtgcgggc ctttgtaggg ctggttgggt ggtacagtaa atttattccc cattttgcag      4020
     atcgagcagc tgttcttact gatctcacca gggcttctgc acctaacaag gttgtttgga      4080
     ctgaggactg tgatgcagcg tttcgggatc taaagggggc catcacaagt gagtctgttc      4140
     tatacagccc tgacttcact cgacccttca tcctgcaaac agatgcatct gctgttggac      4200
     ttggagcagt cttggtgcaa gaagctgaag gggagaggca tccagtgctg ttcctaagca      4260
     ggaaactcct cgaccgagag acccgatact ctacagtgga gaaggagtgt ttggccatga      4320
     agtgggcgat tgactctctg aggtactatc tgctggggcg ccacttctgc ctagagacag      4380
     atcatcgtgc cctgcaatgg ctgaggagaa tgaaagactc caatacacgt ctcactgcat      4440
     ggtacctgtc tcttcaagcc tatgatttca cagtgcaata tcgagcagga aagaccaact      4500
     gtgtggcaga ctgtttgtcc cgtgttcatg agaattgatg tactgtaaac ttgggagagg      4560
     gggtgaggaa a                                                           4571
//
ID   CAM1_GG     repbase; DNA   ; VRT   ; 701 BP.
XX
AC   X70342;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Repetitive element region.
XX
KW   CAM1_GG; GGCAM1; neural cell adhesion molecule.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-701
RA   Sasner M., Covault J.;
RT   "Direct submission.";
RL   Unpublished.
XX
RN   [2]
RP   1-701
RA   Covault J.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (09-FEB-1993). J. Covault,
RL   University of Connectticut, Box U-42, Storrs, CT.
XX
DR   GenBank; X70342; Positions     771    1471.
XX
SQ   Sequence 701 BP; 147 A; 175 C; 254 G; 125 T; 0 other;
     cctcagcagt ttctgatgac accgagctga gtggtgcagt gacacaacat aagtaaggga        60
     cgccatgcag agggacctgg gcaggctcag aaagcgtgca catgggaacc tgatgaggtt       120
     cagcaagtcc aaggtgtggc agctgggtca ggcagtgcca gacatgagcg cagcctggag       180
     aagaactcgt tgagagcagc ctgcggagaa gaatcttggg ggtccgtgga cagaagcgga       240
     catgaggcag cagtgtgcgc ctgcagccct ggtaaggccg acagtcccct gggctgcagc       300
     taacagaggg gtggcagcag ggagaggaga gggaggcgtt gtgcccctct gctctgcccc       360
     tggaaggccc cacctgcagt gctgtgccca gctggggccc ccaggacagg agggatgcag       420
     agctgctgga gtgggtccag aggagggcac gaggatgcta gggctgcagc acctctgctg       480
     tgaagacagg ctgagggagc tgggcttctc tcctacaaga ggggaggcgt tggttagatg       540
     tgagggcggt gaggcgctgt cactgctgcc cagagagctg tggtgcccca tctctgcagc       600
     actcaaggcc aggtgggatg gggccctggc agcctgagct gctggttgac accttgatgg       660
     tctttaaggt cctctccaac atgagccatt ctatgattct g                           701
//
ID   XBR_XL      repbase; DNA   ; VRT   ; 456 BP.
XX
AC   X71081;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Interspersed repeat; nonautonomous DNA transposon.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous;
KW   nonautonomous DNA transposon; T2-group; TIRs; XBR_XL.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-456
RA   Unsal K., Morgan T.G.;
RT   "A novel group of families of short interspersed repetitive
RT   elements (SINEs) in Xenopus: evidence of a specific target site
RT   for DNA-mediated transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248, 812-823 (1995).
XX
DR   GenBank; X71081; Positions   11076   11531.
XX
CC   Nonautonomous DNA transposon; 46 bp TIRs (TTAAAGGRR...); belongs
CC   to
CC   the T2-group [1]. TTAA target site.
XX
SQ   Sequence 456 BP; 152 A; 67 C; 86 G; 151 T; 0 other;
     ttaaaggggt tgttcacctt tgagaacttg tggtgtgatg tagagagaga ttgagaccat        60
     ttgtaatttg ttttcatgtt ttactattga agatttttgt tatttagctt ttttttattc       120
     agcagctctt caatttgtat cttaagcaat ctggtaacta gggtccaaat tacccttgca       180
     accatgcatt gatttgaata agagactgga atatgaatag gagaggggct ccatagaatg       240
     atcagtaata aaaagtaaca aacaatacgc ttgtagcctt acagatcatt tgtttttgtt       300
     ttttagaagg ggaccgcaac gcccatttga aacctgtaaa gagtcagaag aaaaagtcta       360
     actataaaac taaaaaagaa aaccaattga aaagttgctt agtattggct gttctataac       420
     ctaataagtt accttaaagt tgaaccaccc atttaa                                 456
//
ID   ILRC_GL     repbase; DNA   ; VRT   ; 230 BP.
XX
AC   AJ294708;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Geophaps lophotes inverted LINE repeat cluster.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1 repeat;
KW   ILRC; ILRC_GL; inverted LINE repeat cluster.
XX
OS   Geophaps lophotes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Columbiformes; Columbidae;
OC   Geophaps.
XX
RN   [1]
RA   Smith M.L., Burgoyne A.L.;
RT   "Species identity: conserved inverted LINE repeat clusters (ILRC)
RT   in the vertebrate genome as indicators of population
RT   boundaries.";
RL   Gene 271(2), 273-283 (2001).
XX
DR   Genbank; AJ294708; Positions       1     230.
XX
SQ   Sequence 230 BP; 49 A; 76 C; 57 G; 48 T; 0 other;
     gcccagctcc ctcagcctct cccatcacac ttgtgctcca gacccttccc cagctccgtt        60
     cccttctctg aactcactcc agcaccataa ggactttttg acatgggggg cccgaaattg       120
     accctagtgc actgtcagca agtttgctga tgacaccaag ccgaaggagt ggctgacact       180
     ggaaggctgt gctgccatcc agagacctgg acaggctgaa ggagctgggc                  230
//
ID   CR1-G       repbase; DNA   ; VRT   ; 4247 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   CR1 Non-LTR Retrotransposon from chicken.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1-G; CR1_F.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-4247
RA   Smit A.F.;
RT   "CR1-G - CR1 Non-LTR Retrotransposon from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   80% similar to CR1-F  ORF1 220-1296, ORF2 1353-4151. 7-8% subst
CC   level (CR_J of Wicker).
XX
SQ   Sequence 4247 BP; 1020 A; 931 C; 1383 G; 908 T; 5 other;
     agctagcttc tgcccacaga gcacagcagg tgagtaaccg ttgtcgctgc ccactgagaa        60
     cggggaggtt cagtgagtga gcacagccca cactgcccat acggtgctgc agctgtgggt       120
     gtgggaggtg ggtcaagtgg tgaggagtgt aagtgttgtc cctccttgct caggagactg       180
     gctttcctct tggcagtctc tgagaccgca ggcctaaaca tggtctccac cagacagcag       240
     gcttattcca agaagaccgt ggcgacccag acggagggcc tgcccagaaa tgtggctgtt       300
     caggtctccg gctgcaggga gtgcctgagc ctgctgctgc ccggggaggg tggcagggat       360
     tccacctgtg tgaggtgtga gcaggtggat gagctgctca gcctggtggt ggagctcaag       420
     gaggaggtgg aaagactaag gaccatcagg gagtgtgagc gggagatcga ctggtggagt       480
     gactcgctgg cgtgccagag ggaagggtgc cagggagata cccccagaaa agtggttgac       540
     cccctgccct gtcacagtcg gacagacctg acngatgagg agggttggaa gagagtcccg       600
     actcggcgtc acgggagccc cccccgcctg cctaccccgc ttccccagct cccactaagc       660
     aacaggtttg agatgctgga aattgaaggg gaggtgagtg gggaggcgat ggaggatctg       720
     cctaggaggg agcctaaggc gaggcggtca cccccacgcc ttgagactgc ctctgtcagg       780
     aaagaaagaa gggtggtcgt ggtgggcgac tcccttctca gaggaacgga gggccccata       840
     tgcagaccgg acccgagccg tcgggaagtg tgctgccttc ctggggcccg ggtcagggac       900
     ataactagaa aactcccaaa gctggttagg tccactgatt actttccatt actcatagtt       960
     caggtgggca gtgatgaaat tgctcagaga agcctacgaa ctatgaaaag agatttcagg      1020
     ggtttagggc gtttagttca aggagtggga gctcaagtga tcttttgttc tataccttca      1080
     ggggcagtga gggacacgga gcgggcttgg aaagcacaag taatgaataa ttggctcaga      1140
     ggctggtgtc gaggcagaaa ctttgggttc tttgatcatg gggcagttta ctcggcccct      1200
     ggcctgttgt ccgtgcatgg aacccaccta tctcaaaggg ggaaacgaat cctagcgcag      1260
     gagctagcag ggcttatcga aagagcttta aactagctac gacgggggaa ggggacaaaa      1320
     cagggctcac cagagatgag cctaggggaa cgatgcttga gctgggggtg aggcagatga      1380
     ctcggctgaa gtgcatctac accaatgcac gcagcatggg caacaagcag gaggagctgg      1440
     aagcgattgt gcggcaggct aactatgacc tagttgctat taccgaaaca tggtgggacc      1500
     actcccatga ctggagtgct gtgatggatg gctacaagct cttcagaagg gatagacgag      1560
     gaaggaaggg tggtggtgtg gccctttata ttaaagantg ttttgatgtt gaagagcttg      1620
     gggttgggaa tgataaagtt gagtgtctgt gggtaaggat cagggggaag gcctgtaggg      1680
     gcgacatctt ggtgggggtc tgttatagac cgcctaatca ggatgaagag anggacgagg      1740
     cattctatga gcagcttgcg gaagtcgcgc gatcgccagc actcgttctc atgggagact      1800
     tcaacttccc tgatatatgt tggaaatata atacagcgca gaggaagcag tccaagaggt      1860
     ttctagagtg cgtggaagat agcttcctta cgcagctggt acgagagcct accaggggtg      1920
     gtgccctgct agacctgctc ttcactaaca gtgaaggact ggtgggagat gtgaaggctg      1980
     gggactgtct tgggcagagc gaccatgaaa ttgtagaatt ctctattctt ggagatgtca      2040
     gaagggtgac tagcaaaact gctatcttga acttccagag ggcggacttt gacctgttca      2100
     ggacgcttgt ngcangggtc ccttgggagt cgctccttaa gggtaaaggg gtccaggaag      2160
     cctggacgct cctcaagatg gaaatcttaa aggcacaaga acaggctgtc cctgaatgcc      2220
     gtaaggcgag ccgtagggga agaagaccgg tgtggatgaa ccgggaacta ctgttgagac      2280
     tccggaagaa aaagagagtc tatgtcctct ggaagaaggg acaggctact tggggagatt      2340
     acaaggaagt tgctaaggta tgcagggagg aagttaggaa ggcaaaagcc caacttgaac      2400
     tcagattggc cactgcagta aaagagaata agaaatcctt ttacaaatat atcagcggta      2460
     agagaagaac caaggagaat ttccatcctt tacttgatgc agcggggaat gtgaccactg      2520
     aggataagga gaaggctgag gtcctcaacg ccttctttac atctgccttt aataggcaga      2580
     tcagttatcc tcagggcact ttacgccctg atctggaagt ctgggatgct acgcagaata      2640
     cacccccggt gattcaggtg gagacagtta gagagctcct cctccatctg gactgtcaca      2700
     agtccatggg accggacggg ctccacccta gggtgctgag ggagctggcg ggggtgattg      2760
     ccgagccgct ctccgccatc taccagcgct cctggttatc tggagaggtc ccagaggact      2820
     ggaggcttgc cgatgtgact cccatctaca agaagggccg taaggaggat ccggggaact      2880
     acaggcctgt cagcctgacc tcggtaccag ggaaagttat ggagcaaatc atcttgggtg      2940
     agatcacacg gcacgtgcgt ggcgtccagg ggatcaggcc cagccagcac gggttcatga      3000
     aaggcaggtc gtgcttgacc aacctcatct ccttctacga ctgggtgacc agactggtag      3060
     acgagggaaa ggctgttgat gtagtctacc tagacttcag caaagccttt gacacggtct      3120
     ctcacagtat tctcctgggg aaactggctg cccgtggcct ggacaggtat acccttcttt      3180
     gggtaaggaa ctggctagag ggccgtgccc agcgggtagt ggttaatgga gttaagtcca      3240
     gctggcgacc cgttacaagt ggtgtccccc aggggtcggt actggggccc atcttgttta      3300
     atatctttat tgatgaccta gatgagggga ttgagtgtac cctcagtaag tttgcagatg      3360
     acaccaagtt gggaggtggt gtcgatctgc ctgagggtag ggaggccctt cagagggatc      3420
     tagataagct ggatcgctgg gctgaggtga atgggatgag gttcaacaag gccaagtgcc      3480
     gggtcctgca ctttggccac aataacccca tgcagcgcta taggcttggg gctgagtggc      3540
     tggatgactg tgaagaggaa agggacctgg gggtgttggt tgatgctcgg ctgaacatga      3600
     gccgacagtg tgcccaggtg gccaagaggg ccaatgccat cctggcctgc attagaaata      3660
     gtgtggccag caggagcagg gaggtaatca tccccctgta ctcagcactg gtgaggccgc      3720
     acctcgagta ctgtgttcag ttttgggccc ctcactacaa gaaagacatt gaggccctgg      3780
     aacgtgtcca gagaagggca acgaaactgg tgaggggtct ggagcacaag tcttatgagg      3840
     agcggctgag ggagctggga ttgtttagtc tggagaagag gaggctcagg ggagacctca      3900
     ttgcactcta caacttcctg aagggaggtt gtgatgagga ggggtttggc ctcttctccc      3960
     aggcaacaaa caggacccga ggaaatggcc acaagttgta ccagaggagg tttagattag      4020
     acataaggaa aaactttttc tctcagagag tggtcaggca ctggaatggc ctgcccaggg      4080
     aggtggtgga gtcgccgtcc ctggcagtgt tcaagaggcg tctggatgag gagctacgag      4140
     atatggttta gtggcttgtg gtagcaatgg taatgggagg acggttggac tagatgatct      4200
     tgtaggtcct ttccaacctt gtgattctat gattctatga ttctatg                    4247
//
ID   GGLTR3E1_LTR repbase; DNA   ; VRT   ; 585 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; GGLTR3E1_LTR;
KW   Kronos_LTR; LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-585
RA   Smit A.F.;
RT   "GGLTR3E1_LTR - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000046; 5 bp dups; 6-7% subst.
XX
SQ   Sequence 585 BP; 129 A; 151 C; 120 G; 185 T; 0 other;
     tgtcatggtt ttgtaatttt gctattggta ttccacatca taacatcatg tacagcacgg        60
     gtaattaaag ggttaatact ccagttccgt ggattgacaa ccttccagat acctgcttct       120
     caaaagagaa gaagaactac atatcccaga ggacctcacg gtcagagaag gaagatacgt       180
     cacggaagtc acgggatctg agtcacgtga tcgggctcac gctctctctc tggcagccag       240
     gcagaggggt gggtgtgctt ccaagccgtg cgccttcatt caagtaggcc tttcggtttc       300
     ggaaactttc tctctcttat tttatttgat ttattaccct tactttcaat tagattgtat       360
     tatattgtgt tatcttgcat tccgatatca tagttagtaa aataagtttt cctccttaga       420
     tcgttgccgc tgctccgttc tttttccctc tctgagccca gctcccgttc ccctacccct       480
     ttcccttttc ccttcccatt tttgggagcc agggggccca cgggcctact gcccccctgt       540
     cacgggcata gatttatcta gattgatcta gataactccg tgaca                       585
//
ID   CAM2_GG     repbase; DNA   ; VRT   ; 301 BP.
XX
AC   X70342;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Repetitive element region.
XX
KW   CAM2_GG; GGCAM2; neural cell adhesion molecule.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-301
RA   Sasner M., Covault J.;
RT   "Direct submission.";
RL   Unpublished.
XX
RN   [2]
RP   1-301
RA   Covault J.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (09-FEB-1993). J. Covault,
RL   University of Connectticut, Box U-42, Storrs, CT.
XX
DR   GenBank; X70342; Positions    3521    3821.
XX
SQ   Sequence 301 BP; 60 A; 69 C; 73 G; 99 T; 0 other;
     gtctcctttc atttacatcc cgagggctac ggtttcataa ataatagtct tttatgtgaa        60
     ccttatcctc ttgacctatg cagaagtcct ggctggcgtg gttttgggtt gttgtttctt       120
     aaaagacact taatatagca gtaagtgaat gaatacccgg tgtttaagtg ttagcgattg       180
     tggctgctct ccaggctgga agtgcctttg ttcctcggct catctccagg agcacatttt       240
     acagccagcc ctccttgcca ctgggaagca gcgattcctt ccttgccgtg ggatttgggg       300
     t                                                                       301
//
ID   LINE2_VA1   repbase; DNA   ; VRT   ; 663 BP.
XX
AC   .
XX
DT   28-MAR-2002 (Rel. 7.02, Created)
DT   28-MAR-2002 (Rel. 7.02, Last updated, Version 1)
XX
DE   Vipera ammodytes non-LTR retrotransposon LINE2 reverse
DE   transcriptase pseudogene - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; LINE;
KW   LINE2_VA1; retrotransposon.
XX
OS   Vipera ammodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Viperidae; Viperinae; Vipera.
XX
RN   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol 18(12), 2213-2224 (2001).
XX
RN   [2]
RP   1-663
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_VA1: non-LTR retrotransposon LINE2 reverse transcriptase
RT   pseudogene from Vipera ammodytes.";
RL   Direct Submission to Repbase Update (12-MAR-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 663 BP; 113 A; 173 C; 191 G; 174 T; 12 other;
     agacctctca gcggcttccg ataccatcga ccatggtatc ctgctgtggc gsctcagggg        60
     attgggagtg ggaggcacag ttttgcagtg gttctcctcc tatctcctgg gacgttcgca       120
     gtcggtgttg gcaggggggc agaggtcgac ctcgaggtct ctcgtttgtg gagttcctca       180
     ggggtcggtc ctctcgcctc tcctgttcaa catctacatg aaaccgctgg gtgakatcat       240
     tcgtggtttt ggagttgggt atcatcagta tgckgatgat acccagtttt tcatttcgac       300
     cccaaaccac cccagtgatg ccctcgatgt gatgtcctgt tgcctggagg cggttcgggt       360
     ctggatgggg aggaacagac ttcagctcaa ccccgacaag actgagtggc tgtgkatwcc       420
     ggcatcccgg gatattcaaa atattccatc tcttttsatg gggggtgagk tattaccccc       480
     cgtrgatagg gctcgcaact tgggagtcct cctagattca cggcttaatt tggaagatca       540
     tatagtggcc gtgactaggg gggccttcgc ccaggttcgc ctggtgcgcc agttgcggcc       600
     ctntttggac cgrgatgccc trtgyacggt cactcatgcg ctcgtcactt ctcgcctgga       660
     cta                                                                     663
//
ID   OCR         repbase; DNA   ; VRT   ; 431 BP.
XX
AC   .
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Interspersed repeat OCR.
XX
KW   hAT; DNA transposon; Interspersed Repeat; Non-autonomous;
KW   hAT superfamily; nonautonomous DNA transposon; OCR; TIR.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RA   Morgan T.G., Middleton M.K.;
RT   "Short interspersed repeats from Xenopus that contain multiple
RT   octamer motifs are related to known transposable elements.";
RL   Nucleic Acids Res 18, 5781-5786 (1990).
XX
RN   [2]
RA   Guttridge L.K., Smith D.L.;
RT   "Xenopus interspersed RNA families, Ocr and XR, bind DNA-binding
RT   proteins.";
RL   Zygote 3, 111-122 (1995).
XX
RN   [3]
RP   1-431
RA   Kapitonov V.V., Jurka J.;
RT   "OCR.";
RL   Direct Submission to Repbase Update (APR-1997).
XX
CC   [3] (Consensus)
XX
CC   OCR is a putative nonautonomous DNA transposon flanked by 19 bp
CC   TIRs [1] and by a 8 bp target site duplication [3],
CC   characteristic of the HAT superfamily of DNA transposons.
XX
SQ   Sequence 431 BP; 106 A; 91 C; 108 G; 115 T; 11 other;
     tagggatgca ccgaatccag gattcggttc gggatttcgg cctttttcag caggattcgg        60
     ccgaatcctt ctgcccggcc gaaccgaatc ctaatttgca tatgcaaatt aggggcgggg       120
     agggaaatyg cgtgactttt tgtcacaaaa caaggaagta aaaaatgttt tccccttccc       180
     cccctaattt gcatatgcaa attaggattc ggttyggtat tcggccgaat ctttcgcgaa       240
     ggattcgggg gttcggcagg gaggtaaatc gcgtgacttt ttgtcacaaa acaaggaagt       300
     aaaaattgtt tccccmttcc caccctaatt tgcatatgca aatwaggatt yggwttsgta       360
     ttcggccgaa tctttcgysa aggattyggg ggttcggccg aatccaaaaw agtggattcg       420
     gtgcatccct a                                                            431
//
ID   XL1723I     repbase; DNA   ; VRT   ; 577 BP.
XX
AC   X00077;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   DNA transposon 1723; internal part.
XX
KW   hAT; DNA transposon; Interspersed Repeat; DNA transposon 1723;
KW   hAT superfamily; XL1723; XL1723I; internal part.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-577
RA   Kay K.B., Dawid B.I.;
RT   "The 1723 element: a long, homogeneous, highly repeated DNA unit
RT   interspersed in the genome of Xenopus laevis.";
RL   J. Mol. Biol 170(3), 583-596 (1983).
XX
DR   GenBank; X00077; Positions       1     577.
XX
CC   Internal part of DNA transposon 1723.
CC   1723 transposon is flanked by 8 bp target site duplications and
CC   its TIRs are similar to the Ac and Ds1 transposons (HAT
CC   superfamily).
CC   The left and right parts of the 1723 transposon are listed as
CC   XL1723L and XL1723R.
XX
SQ   Sequence 577 BP; 220 A; 89 C; 131 G; 137 T; 0 other;
     tagcggtgca tacggattac gtaaaatatg aatgctgctt gaaaaaagtg actccggtgg        60
     ttttttctgg aggacggtaa tattatggat atttagacag aatgggaaca aggtcacaca       120
     gctcgaatgg cgggttgaag aaaacagtgt gcaaataatg cctacaaggc caacgtatac       180
     actactacag cggtggatac ggattacgta aaatatatga atgctgcttg aaaaaagtga       240
     ctccggtgtt ttttctggag acggtaatat tatggatatt tagacagaat gggaacaagg       300
     tcacacagct cgatggcggg ttgaagaaaa cagtgtgcaa ataatgccta cagggcaaat       360
     aatgcctaaa aggtcaactt atacactact acagcggtag taaaataaaa aaaagtaaaa       420
     taaaaaaaaa attaatatta aaaaaaaaaa attaaagttg gtgctgctga ctactactag       480
     gagcagcaga ttagcacaca gtcccatcca acactgctag actaatgagc actgggctct       540
     atagtagtag tagtagtagt agtagtaaaa caacaaa                                577
//
ID   CASAT       repbase; DNA   ; VRT   ; 269 BP.
XX
AC   .
XX
DT   22-JUL-1999 (Rel. 4.06, Created)
DT   22-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Carp satellite DNA sequence - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; CASAT.
XX
OS   Carassius auratus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Carassius.
XX
RN   [1]
RA   Murakami M.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (27-FEB-1997). Masaru
RL   Murakami, Azabu University School of Veterinary Medicine,
RL   Laboratory of Molecular Biology; 1-17-71 Fuchinobe, Sagamihara,
RL   Kanagawa 229-8501, Japan (E-mail:murakami@azabu-u.ac.jp,
RL   Tel:0427-54-7111, Fax:0427-53-3395).
XX
RN   [2]
RP   1-269
RA   Jurka J.;
RT   "CASAT.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [2] (Consensus)
XX
CC   Distantly similar to C.mrigala satellite CMR32SAT.
XX
SQ   Sequence 269 BP; 82 A; 43 C; 48 G; 90 T; 6 other;
     aagcttgtyt ctctgtkaga karagctgyt tcattcaata ttcagtgcaa atcttgccaa        60
     actgaaagat gcttatgcct tatgaaatac aatgttttct gcaatgctgt aagacagttt       120
     ttaatgtgtt agaagttata tgcacaaaaa ctaatgttag agcttcartg ttcaagattg       180
     tcagtttaca ggtttctgag tccagtaatg ctgaaatagt gcttctgttc aaatgaagtg       240
     atatctagcc caaatctgct caaaagctt                                         269
//
ID   GGLTR11_LTR repbase; DNA   ; VRT   ; 534 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from chicken.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-534
RA   Smit A.F.;
RT   "GGLTR11_LTR - ERV1 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000095, partial. 8-10% subst.
XX
SQ   Sequence 534 BP; 152 A; 96 C; 142 G; 144 T; 0 other;
     tgtgagaggt agattgtgtt tttgcagtgg aaatttccag tatttctgta tgtagcatag        60
     gataagttgc ctttcacaaa gaaagctcct gaacagagta aagttgagac tggggcgttc       120
     cgacctaggt agaattggca caggcactag gtaaggtaat tatatagggt aggggagagt       180
     ccggtacagg acagaacgag tgtgctaatt gttgaaaata ttgtcctcct atcgccgtaa       240
     aaagtacaga acatacccaa agacaatggg ttggtaacag acattgtatg gaagtgtaac       300
     gtagcaacag cgtcggaaga ctgtgagcct gagacgctca accagtgagt gccaggagag       360
     gctttacctg cgtcggaccc agggtatata acggaatgga tttcactgac tagttgcgca       420
     atttctccct tgtcagtagg gggtgtgcgc ccattattgc aataatgaat aaactgctct       480
     tcacagagat ctttgcctga ttagaaattt ttgatcttga gcgtgtttct caca             534
//
ID   TKSAT3      repbase; DNA   ; VRT   ; 33 BP.
XX
AC   X60274;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   T.karelini HAEIII satellite (type 3) DNA.
XX
KW   SAT; Satellite; Simple Repeat; Centromeric repeat; TKSAT3.
XX
OS   Triturus karelini
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Caudata; Salamandroidea; Salamandridae;
OC   Triturus.
XX
RN   [1]
RP   1-33
RA   Varley M.J.;
RT   "TKSAT3.";
RL   Direct Submission to Genbank (11-JUN-1991)J.M. Varley, University
RL   of Leicester, ICI/University Joint Laboratory, Leicester LE1 7RH,
RL   UK.
XX
RN   [2]
RP   1-33
RA   Varley M.J., Macgregor C.H., Barnett L.;
RT   "Characterisation of a short, highly repeated and centromerically
RT   localised DNA sequence in crested and marbled newts of the genus
RT   Triturus.";
RL   Chromosoma 100, 15-31 (1990).
XX
DR   GenBank; X60274; Positions       1      33.
XX
SQ   Sequence 33 BP; 12 A; 8 C; 7 G; 6 T; 0 other;
     ccagagtaag agtccaagac cttaaccatt agg                                     33
//
ID   CENT_FC     repbase; DNA   ; VRT   ; 174 BP.
XX
AC   J03042;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Merlin falcon (F.columbarius) centromeric tandem repeat.
XX
KW   Satellite; Simple Repeat; CENT_FC; Centromeric repeat; FCCENT.
XX
OS   Falco columbarius
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco.
XX
RN   [1]
RP   1-174
RA   Longmire L.J., Lewis K.A., Brown C.N., Buckingham M.J.,
RA   Clark M.L., Jones D.M., Meincke J.L., Meyne J., Ratliff L.R.,
RA   Ray A.F., Wagner P.R., Moyzis K.R.;
RT   "Isolation and molecular characterization of a highly polymorphic
RT   centromeric tandem repeat in the family Falconidae.";
RL   Genomics 2, 14-24 (1988).
XX
DR   GenBank; J03042; Positions       1     174.
XX
SQ   Sequence 174 BP; 39 A; 46 C; 47 G; 42 T; 0 other;
     gaagacagca attgcccatc tctgcccaga aagcaggtag aacaactttt gtggtgcctt        60
     tcatctggct accggggcag tgggagaact accaacagaa ctcttttctg gcaccttccc       120
     ctgtggagtt gcgcatgggg tgtggttgga acactttgtc accagccgac tgca             174
//
ID   SINE_TE     repbase; DNA   ; VRT   ; 279 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Fish SINE sequence - consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   SINE_TE; V-SINE.
XX
OS   Teleostei
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii.
XX
RN   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "V-SINEs: a new superfamily of vertebrate SINEs that are
RT   widespread in vertebrate genomes and retain a strongly conserved
RT   segment within each repetitive unit.";
RL   Genome Res 12(2), 316-324 (2002).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of fish SINE element from V-SINE superfamily.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [2] (Consensus)
XX
CC   SINE_TE is a member of the V-SINE superfamily. The sequence is
CC   derived by consensus from fish DNA sequences, excluding
CC   zebrafish.
XX
SQ   Sequence 279 BP; 50 A; 65 C; 85 G; 79 T; 0 other;
     catttcaatt aatgggcggc acggtggcgt ggtggttagc actgttgcct cacagcaaga        60
     aggtcctggg ttcaattcca cccagttggg acaggggcct ttctgtgtgg agtctgcatg       120
     ttctccccgt gtctgcgtgg gttctctccg ggttctccgg cttcctccca cagtccaaag       180
     acatgcagtt ctggggatta ggttaattgg ggactctaaa attgccaccc caacttgcgt       240
     agatgtgtga atgtgagtgt gaatggtgga gtggccttg                              279
//
ID   TX1         repbase; DNA   ; VRT   ; 7320 BP.
XX
AC   M26915;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   X.laevis transposon Tx1 containing two open reading frames.
XX
KW   DNA transposon; Interspersed Repeat; TX1; retrotransposon;
KW   transposon.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-7320
RA   Garrett E.J., Knutzon S.D., Carroll D.;
RT   "Composite transposable elements in the Xenopus laevis genome.";
RL   Mol. Cell. Biol 9, 3018-3027 (1989).
XX
DR   GenBank; M26915; Positions       1    7320.
XX
CC   Tx1 elements has the features of both retrotransposon and DNA
CC   transposon. Putative coding regions are ORF1:758-3085 and ORF2:
CC   3085-7011.
XX
SQ   Sequence 7320 BP; 1939 A; 1662 C; 1722 G; 1997 T; 0 other;
     cttcaacttc ccagcaccat atcacccatg tgtcattacg tactaagaaa aagcacccta        60
     aatatgattg ccagggttac tccgaacagt ttggtggcca ttgttcatag gtttaccaaa       120
     gtatctggca tttagaggcc ccaaaatgaa gttagcgcat acaaacagtc ccgtgggtaa       180
     cttcagctaa tgaaaaatca acacacagga gaaagctctc tgtttagtgc tgaattaagc       240
     attgaaattc ctgtttgaga caggattttt tgttatcact tggtgtgtga atgtgttgtc       300
     cacttggtgg gtgaaatttg ggaagttttg agttgatttt cttgactaaa aatcgatttt       360
     tcttttgacc ctgaaggtga gtgattccta gcccagttcc tttcacttgc tctgggctac       420
     aaactcactg ttagatcccc tacccctccc ccgcacctgg gtgtcagttt catttgcatt       480
     tttctcttgt ttcagcacaa attgtttaat tttgtacaga ttgagtggat attttgattt       540
     tgcactcagt tctgtgagga gagaaagcta aagggagaag gatttaatat aagtataaat       600
     ataaaatctt ttccagcagc agcagtgcag ctcccaggca cctgctcaca ttaaccctct       660
     ccctgccaca gcttctcaac ttaaaactta cttttttttt ttttttttgt taatcaatag       720
     tataaagctt tctttttgtg tggtgttgtg taaaataatg ggagggaata aaaaggaaag       780
     ttataaaaaa acatctcttg gttctaaagc aaaaggacct gaaaaaccca gctgtagctc       840
     tgcaaggaaa caccagtcag agcccatgtc aaaaagcccc attgcctcta cttctgctgc       900
     tgcagccaat gtgacccctg ctaaaacatt tgcacacgcg gtagctactg gcagcaaccc       960
     tggccaagtc actgctgggg tagagaagct tacaaggaag catggggtca gatgcctaat      1020
     gtcaagcact catggcatag aggcttatat aaaggctgca gctgaagtgg tgggccactc      1080
     tgcagtagtg gcagcaagta aaatgtatgg gaaagccata atctttgccc gtactctaac      1140
     tgcagtgcat actctggtac agaggggtat cacagtggga gggagttatg tccctgtaga      1200
     acccctagaa ggattgggca caagggtggt tttatctaat gtgcccccct tcctgcaaga      1260
     ccacttattg tacccccacc tgcaagccct tggggagtta aaatcaaata tgtctagaat      1320
     tcccctggga tgtaaggaga gcagactgag gcacgtcctt tcctttaaaa ggcaggtgca      1380
     actactttta cctcgggggc aagacactat tgaggggtct ttcggggttc catttgaagg      1440
     ggtgctgtat aaaatttttt acagcacaga ggaagtgagg tgcttccttt gcaagaacct      1500
     ggggcacact cgccagagtt gccccaaagg gcaaattaag accacagccc ctgttcctgc      1560
     tcccagtgcc tcaaataaaa catcttatcc tgctgggact atttcagcag ggtcctcaaa      1620
     ggggatatct ccttcactaa agaacctcaa ggtggctgtt acacaaccca cctctacaac      1680
     atccaaacct cctccttctt cactgaagac atctaaggct gcagcatgtc ttacaattgc      1740
     ggcaaaagag aaggggggaa aacatgtcaa agcttccccc agggtcacag ttgttcctat      1800
     cacaaaaaag tgtacccctg ttatgggcac ccctgaaggt gtgggggtac ccatgattgc      1860
     aacatctgtt ggggttgggg cagatagtgg cctttcctct tcagatgcca agaaaaagag      1920
     gaaatttaaa tcaaactggc tggtacctga ggaatgggca tcagtggtta atgatggggc      1980
     acccccatcc aagggtaaaa agggcagcaa aacttctgct cctcatgtgg tgacattgtc      2040
     tggcccaact gttggtcacg atcaaccggt gtcagaccat gcactcttgc ctccagacca      2100
     ggtggggaat aatgaggtta atggtctgca tggccttgaa catggcagtg ttggtttccc      2160
     cacagaatca ggggtgcagt atctgcctca aaatcatttg gaagatcttc ccttggagtg      2220
     taaagagaca cctaatgaga ctcctgcaga gtgggcagtc agtgttcctg aagtgctgag      2280
     atttggcaac tgcaaccagc ctcagttttt agtgcctcag ggtatttcac tccaggaggg      2340
     ggagaatatt gggctaaccc ccatacagga ccctgcagat aaaactgctg ggaaggatgg      2400
     tgagggtgga gttgtagata cggaggaggg tagccagaca acctctactg ttcatgctaa      2460
     aatctctctt cccttgtctt caactgaccc aaatgttatt gccatccaga aagcacagga      2520
     ggtagtagag agggcagagg ctaaccatcg agcctccaaa gctctacctg ttgctgggga      2580
     gctaattagt tctgttgctc ctgtgtcaaa cacttccaaa tgtgtttcaa gtgaagttga      2640
     gggaacacct gagccattgc agggtctcca gaaaagtgat tctgatactt ttcctgcaac      2700
     aacttgtgga gagattctca aagctctagt ggagagggga gattatcaat cccttagcca      2760
     ggaagagctc atggatgagg ggaacatcga agaggaggtt gacataggag tggcaaatcc      2820
     ttctacccca atcatccctg ctgaggaact caaaaaattt cttgagagca cccttggtgt      2880
     taaattagag aagaagatgc acatggctct ggagaagtgg catgatttgc ctttagttat      2940
     caattctgtg agacaataca ttaaggtcat aaaagaggcc aagaactatg gaacagcgga      3000
     atatctccgt ataatgaagt ttcacaaaaa atgtttgtct catcagacct tgatgaaggt      3060
     taaagcactt cctaagactc agtaatggcc ttgagtataa gcacacttaa tactaatggc      3120
     tgtcggaatc ctttccgaat gtttcaggta ctctcctttc ttcgtcaagg agggtactct      3180
     gtgagtttcc tccaagagac ccacaccact ccagagcttg aagcaagctg gaatctggag      3240
     tggaagggaa gggtcttttt taatcacctc acttggacat catgcggggt ggtgaccctt      3300
     ttctcagatt ccttccagcc agaggtcctg agtgctacct ctgtcatccc tggccgtcta      3360
     ttgcatcttc gggtccggga gtcaggtaga acatataatc taatgaatgt gtatgctcct      3420
     actaccggac cagagagggc acggttcttt gaaagtttgt cagcctacat ggagacaatt      3480
     gactctgatg aagccttgat tatagggggt gattttaatt acacccttga tgctcgagat      3540
     cgcaatgtac ccaagaaaag agactcgtct gagtccgttt tgcgagaact aattgctcat      3600
     ttctccttgg ttgatgtctg gagagaacag aacccagaga cggttgcctt tacctatgtc      3660
     agggtgagag atggtcatgt ttctcaatcc cggattgata ggatatatat atcgagccat      3720
     ctcatgtcac gagcccagtc gagcaccatt agattggcac cattctcaga ccacaattgt      3780
     gtatccctga gaatgtcaat cgcaccatct ctgccaaaag ctgcttactg gcactttaac      3840
     aacagtttat tagaagatga gggttttgca aagtcagtcc gggatacatg gagaggctgg      3900
     agggcctttc aggatgaatt tgccacattg aaccagtggt gggatgtagg caaggttcac      3960
     ctaaagctct tgtgtcaaga gtataccaaa agtgtgagcg ggcagcgcaa tgcagagatt      4020
     gaggcactga atggggaggt gcttgatctt gagcaaaggc tatcaggctc tgaagaccaa      4080
     gcccttcagt gtgaatatct agaaaggaaa gaagcgctgc gtaacatgga acaacgacag      4140
     gctcgtggtg cctttgtgcg aagccggatg cagttacttt gtgatatgga tcgtggttcc      4200
     cgattcttct atgctctgga gaagaagaag gggaaccgaa aacaaatcac atgccttttt      4260
     gcggaggatg gaacccccct tgaggatccg gaggctatcc gggacagagc ccggtccttc      4320
     tatcaaaacc ttttttctcc agatcccatc tctccagatg cctgtgagga actatgggat      4380
     gggcttccag tggtcagtga gaggagaaaa gagaggttgg aaacaccaat cactctagat      4440
     gaactctctc aagcactccg tttaatgccc cacaataaat ctcctgggct tgacggactg      4500
     accatagagt tcttccagtt cttttgggat actctgggcc ctgatttcca tagggtccta      4560
     actgaggcct tcaagaaagg tgagttgcca ctttcgtgtc gtcgagcagt tttatcacta      4620
     cttcctaaga agggggatct ccgtcttatt aagaactgga gaccagtctc actgcttagc      4680
     acagactata agatcgtggc caaagctatc tcacttaggc tcaaatctgt gctggcagag      4740
     gtgattcatc ctgaccagtc ctatacagtc cccggtcgga caatttttga taatgtcttt      4800
     ttaatccgag acttactaca ttttgcgaga aggactggtc tatctcttgc ttttctctct      4860
     ctggatcaag agaaggcatt tgacagggtg gatcaccaat atcttatagg cactctgcaa      4920
     gcctatagct ttggcccaca gtttgtgggc tacctgaaaa caatgtatgc ctctgcagag      4980
     tgtttagtta aaatcaactg gtctctgact gcacctctgg cctttggacg aggagttcgg      5040
     caaggatgcc ccttgtcggg acaactgtac tcgctggcca ttgagccctt cctgtgtctc      5100
     ttaaggaaaa ggctcacggg actggtgctc aaagaacctg acatgagggt ggttctctca      5160
     gcctacgctg atgatgtaat tcttgtggcc caggacctag ttgatcttga gcgggcacaa      5220
     gagtgtcaag aagtctacgc tgctgcctca tctgcccgga tcaactggtc caagagctca      5280
     ggccttctgg agggttctct aaaggtagat ttcctgcctc ctgcttttcg tgacatctcg      5340
     tgggagagta aaatcattaa atatttaggc gtctacctat cagctgagga gtatcctgtc      5400
     tcacaaaatt tcattgaact tgaggagtgt gttctaacgc gccttggaaa gtggaagggt      5460
     tttgctaaag tactttctat gagggggaga gctttggtga ttaatcagct ggtggcctct      5520
     cagatctggt accggctgat atgtcttagc ccaacccaag aattcattgc taagatccag      5580
     agaaggttac tggactttct ctggatagga aagcattggg tttctgcagg tgtctcaagc      5640
     ctcccgttga aagagggagg gcagggagtc gtgtgtatac gttctcaagt gcacaccttc      5700
     cgtctccagc aaatacagag atacttgtat gcagatcctt ctccacagtg gtgtactcta      5760
     gcatcgagtt tttatcgcca ggtacgaaat atgggatatg accggcaatt gtttataatt      5820
     gaacctgagg gtttcctaag aaacctttca accctgccgg cttactacca agacacgcta      5880
     aaaacctgga gcatggtatc cgtgttaagg caaggagcca ctgaagggga agacattcta      5940
     aatgagcccc tactttacaa tccatctttt aagactagga tgttagaatc catcagcatc      6000
     cgacgtcgcc tttgccaggc tcagttaacc agagttggag atctcctgga ttttgagaaa      6060
     tcagattggg tggactctca agcagttatg caacgcatgg gattcctcac cactagggtt      6120
     ccacaccgtc ttctcaagga aatcaaggac acaatctctc ctgattctca caccttcatt      6180
     gatggggttt tacatgctgg agagccacgt ccaccttgga actcctcacc tccagacata      6240
     ataatagcac ctaaaacccg tcaatccccc caagcacctc cttcccccaa cttgagccag      6300
     ttggagaatt ttccattgac acgctttcat gatataacaa gaaagctgtt gtactctcta      6360
     atgcttcaca ctgtacactt ccttgccctc atctcccgat atgataccat ctggagacgt      6420
     gtgcttaatg agggtgaaag acctcagtgg cgagcttttt attccagttt ggtgcctaga      6480
     ccaactggag acttgagttg gaaagtgctg catggtgcat tgagcacagg agagtatcta      6540
     gctcgtttta cagactcccc agctgcttgt ccattctgtg gcaaaggaga gtctgtgttt      6600
     catgcttatt ttacgtgtgc cagactgcaa cctctattgg ctcttttgag gaagctttac      6660
     ctgcagttct ggttacactt ttcccctcat gtttatattt ttggacgccc agtatcccgg      6720
     gacaataaag agaaagacct tctctccaac ttgctcctgg ctttagctaa attagtcatc      6780
     cataaatcta gaaagcaatg tttggaaggt gggaatcctc tgccagcaga ggtcttgttc      6840
     cgagtgctgg tgcgttcccg catccgagca gagtacaccc aagcagtgtt tactggtcgg      6900
     ttgaaagaat ttgctgacca gtgggcaata gatggggtac tttgctcagt atccccagac      6960
     ctggtttctg ttcagacaat tctcacactc ccatatttaa gtgcacttta atttaagtga      7020
     cagttgtatt ttaatcagtt aattatctcc tttgagatgt gattaacttt ggtgagcaat      7080
     cactcacctg caatttgaat aatatatcag ctaatgaaaa atcaacacat tgactgcatt      7140
     tttgtggggt aaaaacacag aaatatatgt ttacccccca aacccataca tttttggaaa      7200
     gtacacattc taccgaatct aaaatgggta cccatgcctt attgctccaa actactgagt      7260
     cgcaaggctt tcccaaagtt gtcggttttg gtgaaatatc tgaaaattgc ctcaaagctt      7320
//
ID   GGLTR2      repbase; DNA   ; VRT   ; 397 BP.
XX
AC   M55076;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Chicken long terminal repeat (LTR).
XX
KW   LTR Retrotransposon; Interspersed Repeat; GGLTR2;
KW   Long terminal repeat (LTR).
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-397
RA   Papas S.T., Rushlow E.K., Watson K.D., Bader P.J., Reddy E.P.;
RT   "the transforming gene of avian meyloblastosis virus (AMV):
RT   Nucleotide sequence analysis and identification of its
RT   translational product.";
RL   Hamatol. Bluttransfus 25, 207-213 (1983).
XX
DR   GenBank; M55076; Positions    1462    1858.
XX
SQ   Sequence 397 BP; 105 A; 84 C; 105 G; 103 T; 0 other;
     gggaggggga aatgtagtct taatcgtagg ttaacatgta tattaccaaa taagggaatc        60
     gcctgatgca ccaaataagg tattatatga tcccattggt ggtgaaggag cgacctgagg       120
     gcatatgggc gttaacagaa ctgtctgtcc ttgcgtcatt cctcatcgga tcatgtacgc       180
     ggcagagtat gattggataa caggatggca ccattcatcg tggcgcatgc tgattggtgc       240
     actaaggagt tgtgtaaccc acgaatgtac ttaagcttgt agttgctaac aataaagtgc       300
     cattctacct ctcaccacat tggtgtgcac ctgggttgat cgccggaccg tcgattccct       360
     gacgactgcg aacacctgaa tgaagctgaa ggcttca                                397
//
ID   XL1723R     repbase; DNA   ; VRT   ; 444 BP.
XX
AC   X00079;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   DNA transposon 1723; right part.
XX
KW   hAT; DNA transposon; Interspersed Repeat; DNA transposon 1723;
KW   hAT superfamily; XL1723R; right part.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-444
RA   Kay K.B., Dawid B.I.;
RT   "The 1723 element: a long, homogeneous, highly repeated DNA unit
RT   interspersed in the genome of Xenopus laevis.";
RL   J. Mol. Biol 170(3), 583-596 (1983).
XX
DR   GenBank; X00079; Positions       1     444.
XX
CC   Right part of DNA transposon 1723.
CC   1723 transposon is flanked by 8 bp target site duplications and
CC   its TIRs are similar to the Ac and Ds1 transposons (HAT
CC   superfamily).
CC   Internal and left parts of the 1723 transposon are listed as
CC   XL1723I
CC   and XL1723L.
XX
SQ   Sequence 444 BP; 141 A; 116 C; 102 G; 85 T; 0 other;
     aaaataaata aaagcagtcc ttacaaggac tcagcagtca gcagaccaga tcggaaggca        60
     ggacgctgcc cactgcagtg gaaggtagat tactcagcca gcaaagctac ctaagcttaa       120
     atgtccctca aacccctgca gacttctgtc cctccaataa cagagcagta tcaaaacgta       180
     ttactagcca gcaaactttc aactgtccct gaaatcacta acaggcagca gctctctccc       240
     tacactatct cttcagcaca cacaggcaga gtgaaaaaac gctgcagggc ttcaattttt       300
     atagggaagg ggagtggtcc aggggagagc ttcctgattg gctgccatgt acctgctggt       360
     ctggggtgag agggcaaaaa aaagcgccaa caatggcgaa cccaaaatgg cgaacagtac       420
     gaagcaacgt tcgcgacatc tcta                                              444
//
ID   MSAT2_MG    repbase; DNA   ; VRT   ; 475 BP.
XX
AC   AF111600;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Meleagris gallopavo clones TUCA556 and TUCA955 microsatellite.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT2_MG; microsatellite repeat;
KW   tandem repeat.
XX
OS   Meleagris gallopavo
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Meleagris.
XX
RN   [1]
RA   Smith J.E., Nahason S., Shi L., Drummond P., Zahorchak R.,
RA   Foster C.J.;
RT   "Genomic DNA sequence from a DNA library from turkey
RT   microsatellites.";
RL   Unpublished.
XX
DR   Genbank; AF111600; Positions       1     475.
XX
SQ   Sequence 475 BP; 135 A; 98 C; 106 G; 135 T; 1 other;
     acaccttcca aaaacacaag tgtggagaat ttcatatgaa ctggggagcg ngaagggggt        60
     gcaccttaag ttccaatgtt aaagcctctt ctttgagaaa taggctacat cagtgcagct       120
     ttgtggcacg tggcaggagt ctgtgacctc tgtgacgtga gtctgtcgtg gtccaggtga       180
     gcatcatgag caggagctgc tgaaatagaa gggctgcagc tggatgatgg tgtaggactc       240
     tcccctccgt tcctcccaac cttatgattt catctgggaa atccaaacag tttgttcgga       300
     aataaacaca cacacacaaa aaaaagaagt attttagtgt tcctgtaatg ttgtcctcat       360
     tgttttaaat gtccataacg tttactgagt gcatttcaaa ttcacaaata gttttgcatt       420
     caccgaatgc ttattttggc aagacaaaca attcacttca tcagtttcaa catgg            475
//
ID   AVIXHoI     repbase; DNA   ; VRT   ; 340 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Avian W-chromosome repeat region - consensus.
XX
KW   AVIXHoI; Repetitive DNA.
XX
OS   Strigidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Strigiformes.
XX
RN   [1]
RA   de Kloet R.S.;
RT   "Repetitive DNA on the W chromosome of owls: widespread
RT   occurrence of curved DNA on the avian W chromosome.";
RL   Unpublished.
XX
RN   [2]
RA   de Kloet R.S.;
RT   "Direct Submission to Genbank.";
RL   Direct Submission to Genbank (24-JAN-2000)Avian Biotech. Int.,
RL   4500 Shannon Lakes Plaza, Ste 138, Tallahassee, FL 32308, USA.
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "Consensus of avian W-chromosome repeat.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [3] (Consensus)
XX
CC   Possible satellite DNA.
XX
SQ   Sequence 340 BP; 79 A; 90 C; 59 G; 112 T; 0 other;
     tcgagtccag ggttgaaagc cgcatcttta tgctccaaac gaccgttttt aggcttcaaa        60
     tcctactttt aattctgaaa tcccactttt ttacgctcca aacactacat taagggcaca       120
     aagtctcaat tttaggtccc aacgcttcct ttttagagtc cggaacgttg gttccagggt       180
     tgaaagcctc cctgttctgc ttcaaaccgt catttagaag gtacaagccc tcgtttttag       240
     ggcgcaatgc ctcatttttt ggccgcgaat cctccttttt aggggtcaac acgtcctttt       300
     tactgtaaaa tccctcactt ttatgttcca gacatctcat                             340
//
ID   BRIDGE1_TN  repbase; DNA   ; VRT   ; 2266 BP.
XX
AC   .
XX
DT   21-2000 (Rel. 5.11, Created)
DT   21-2000 (Rel. 5.11, Last updated, Version 1)
XX
DE   BRIDGE1_TN is a non-LTR retrotransposon - a partial consensus
DE   sequence.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; BRIDGE superfamily;
KW   BRIDGE1_TN; reverse transcriptase.
XX
OS   Tetraodon nigroviridis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Tetraodontiformes;
OC   Tetradontoidea; Tetraodontidae; Tetraodon.
XX
RN   [1]
RP   1-2266
RA   Kapitonov V.V.;
RT   "BRIDGE1_TN.";
RL   Direct Submission to Repbase Update (2000).
XX
CC   [1] (Consensus)
XX
CC   BRIDGE1_TN is a non-LTR retrotransposon that belongs to the
CC   BRIDGE superfamily. The consensus sequence has been recovered
CC   from multiple GSS sequences, the 5'end of the consensus can be
CC   expanded. There is ~80% nucleotide identity between BRIDGE1_TN
CC   and BRIDGE2_FR. BRIDGE1_TN encodes reverse transcriptase
CC   BRIDGE1_TNp:.
XX
FH   Key           Location/Qualifiers
FT   CDS           1..2145
FT                 /product="BRIDGE1_TNp"
FT                 /translation="LTKTEKDLLSRGLNSAVTPEELPVVDLITATETAIRN
FT                 NKLPETEAEQIRLKVSAALANAKAPASNITAQEKRALASLAKDKDITILPA
FT                 DKGRCTVVLNTTDYDSKILSLLGDSNTYEKLKRDPTSTYKKKVIDLLQKLE
FT                 KEQAIDKPQYYRLYPGEATPCFYGLPKIHKEGTPLRPIVSSINSVTYNISK
FT                 FLASILAPMVGNTPHHIKNSQDFAEKVSNLQLESGETMVSFDVTSLFTCIP
FT                 TSEATEAIHKRLLLDKNLQERTTLSPAQICTMLDLCLNTTYFQFRESFYRQ
FT                 KHGCAMGSPVSPIVANLYMEEVEKRALLSFTGAAPSRWFRYVDDTWVKIQT
FT                 KEVEKFTTHLNQTDTFVKFTREDVKGDSLAFLDCEIRIEEDRNLSIEIYRK
FT                 PTHTDQYLLFDSHHPLEHKLGVIKTLQHRATKVPTTSHGRKKEQDHLTTAL
FT                 KTCGYPDWAFTKTRKKRDPSNEEEKDKRHSVSIPYMAGVSEKFRRILQKHN
FT                 IPVQFKPSNTLRQKLVHPKDKTPRHKQSNVVYAVQCQQECRDLYIGETKQP
FT                 LHKRMAQHRRATTSGQDSAVHLHLKESGHSFEDNQVRVLAREDRWFERGVK
FT                 EAIHVKMEKPSLNRGGGLRHHLSPTYNAVLHSFHKQKPKHTHSFTRAGVTS
FT                 PGDPAVKRKTSQTETRSTTLPTTLPTTPETSIQTTGILMQRLSVDISMPMV
FT                 QKGYIFKLCTEPDQN"
XX
SQ   Sequence 2266 BP; 750 A; 639 C; 468 G; 409 T; 0 other;
     ctcaccaaaa ctgaaaagga cttactttcc agaggtctga actccgcggt aaccccagaa        60
     gagttaccgg ttgtcgacct catcacagcc actgaaacag ccattaggaa caataaactc       120
     ccagaaacag aagccgaaca gatcaggctt aaggtatcgg ctgccttggc caatgccaaa       180
     gccccagcct ccaacatcac cgcccaagag aagagagcac tggcctcgct ggcaaaagac       240
     aaggacatca ccattttgcc agcggacaaa ggtaggtgca cagtcgtact taacaccaca       300
     gactacgact ccaagatact cagccttctg ggcgactcca acacctacga aaaactcaaa       360
     cgggacccaa ccagcacgta taagaagaag gttatagatc ttctccaaaa actggaaaag       420
     gagcaagcca tcgacaaacc tcaatactac cggctgtatc caggtgaagc taccccgtgc       480
     ttttatggat tgcccaagat ccataaagag gggacaccac tcaggccgat agtcagcagc       540
     atcaattcgg tcacatacaa tatctcaaaa ttcctggcct ccatcctggc tccaatggtt       600
     ggcaacaccc cacatcacat caaaaactcc caggactttg cagaaaaggt cagcaacctt       660
     caactggaat caggggagac catggtgtcc tttgatgtca cctccctatt cacctgcatc       720
     cccacctccg aggcaacaga agctatccac aagcgcctgt tactagacaa gaacctccag       780
     gagagaacaa cattatcacc agcccagatc tgcacgatgc tggacctctg cttaaacacc       840
     acatacttcc agttcagaga aagcttctac aggcagaaac atggctgtgc catgggctca       900
     ccagtttcac ccatagtcgc caacctctac atggaagagg tggaaaagag ggccctgttg       960
     tcctttacag gagccgcgcc aagccgatgg ttcaggtacg tggacgacac ctgggttaaa      1020
     attcaaacaa aagaagtgga aaaattcaca acccacctca atcagacgga cacctttgta      1080
     aaattcacaa gggaagatgt gaaaggtgac agcctggcct tcttggactg cgaaatcagg      1140
     atcgaggagg acaggaacct cagcatcgaa atatacagga aacccacaca cacagatcaa      1200
     tacctcctgt ttgattctca ccatccactg gaacacaaac ttggggttat caaaacccta      1260
     cagcacaggg ccacaaaagt accgaccaca tcacatggta ggaaaaaaga acaggaccac      1320
     ctgaccacag ccctcaaaac ttgtggttac ccagactggg ccttcacaaa gacccgcaag      1380
     aaacgagacc ccagcaatga agaggagaag gacaaacgtc acagcgtttc catcccctac      1440
     atggctggag tttcggaaaa attcaggagg atcctccaaa agcacaacat tccagtgcaa      1500
     ttcaaaccct ccaacaccct aaggcagaaa ctggtccacc ccaaagacaa gacaccaaga      1560
     cataaacaaa gcaatgttgt ttatgctgta cagtgccagc aggaatgcag ggatctgtac      1620
     attggggaaa caaaacagcc actccacaaa cggatggccc aacacagacg ggccaccacg      1680
     tcagggcaag actcagccgt ccacttacat ctcaaagaaa gtgggcattc ctttgaggac      1740
     aaccaagtgc gggtgctggc aagagaagac cgctggttcg aaagaggcgt caaagaagcc      1800
     atccatgtta agatggaaaa accatctttg aacagaggtg gtggtctcag acaccatctt      1860
     tcacccactt acaatgctgt cctccattct ttccacaaac agaaaccaaa acatacccac      1920
     agtttcacca gggcaggtgt tacatcacca ggtgacccag cagtcaaaag aaaaaccagc      1980
     caaaccgaaa ctaggtcaac gactctgcca acgaccctgc caacgacccc cgagacatcc      2040
     attcagacca ctggcatact aatgcaaaga ctctcagttg acattagcat gccaatggtc      2100
     caaaagggct atatcttcaa gctctgcacc gaacctgatc agaactgatg aagccttttg      2160
     gatagaaggc gaaacgtttt ccaaaaagaa aattgaaaag tccagatgaa cacagaatct      2220
     tttctcggat aactatgacc tggatgactg agaacctaca cagaca                     2266
//
ID   LFR1_LP     repbase; DNA   ; VRT   ; 1373 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Lepidosiren paradoxa repeat sequence LfR1 LINE.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; LFR1_LP;
KW   LINE element LfR1.
XX
OS   Lepidosiren paradoxa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Dipnoi; Lepidosireniformes; Lepidosirenidae; Lepidosiren.
XX
RN   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "V-SINEs: a new superfamily of vertebrate SINEs that are
RT   widespread in vertebrate genomes and retain a strongly conserved
RT   segment within each repetitive unit.";
RL   Genome Res 12(2), 316-324 (2002).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of L. paradoxa LfR1 LINE.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 85%.
XX
SQ   Sequence 1373 BP; 367 A; 314 C; 289 G; 361 T; 42 other;
     ccttgtcacc tctggtcccc ccttgbccat catcdctgdc cccacccctg tcatctctct        60
     ggaggaggtg cadgcatcat tatchaagac aaaaaacaca tcatctatgg gtccagataa       120
     tattccgggc tccttactgg tatcactcaa gagcagcttt gcccctcagc tgcataghtt       180
     atttaatctt agtctccaca ctgggcatgt tccdcaagag tggagaactg caacagtcat       240
     ccccttacac aagggtggcc ccactactga cccggdaact acaggccaat taghctcact       300
     agtctcatat gbaaggctat ggaatgtatc atagcagatc tyataaayma ggatcttggt       360
     gggctacaga ccctggatcc cctccagttt ggatttrtga agggcaggtc rtgccttytg       420
     aatctrgtgg atttctttga aagggtgact gagtcyytgg accaggrtgg ggaagttcat       480
     accacctatc ttgacctggc caaggccttt gacaccatcc ctctctctgg tatagtcgaa       540
     agactcatcc aahtaaatgt caavcccttt attactcact ggathgcaaa ttggctcaca       600
     aataggacac agaaaattaa aataggtggt gcaaattcat ccatctgtac tgtcactagt       660
     ggcattcctc agggatcagt cctgggaccc ttgctctttg gcathtactt ctccgaggtv       720
     hvatccaatg tggaaggcct atggcttact aagtttgcag atgactgaaa attvggdgca       780
     gtagtgaaat ctgatgcaga caatgatact ghadcagggt ctaaaccaga tgaatacatg       840
     gtgtaaagac catggtttga aattaaatgc caaaaaatgt gtaattgttc agtttgggaa       900
     cagatctact tctacgtcat accaaattga gggagtaccc ctcahtacag aagcagtagt       960
     aagagatctg ggaacatatg tggatgagaa gctgtccttt gaccaacatg ttgccacagt      1020
     ggthaggaaa gctttcggga ttgctcacct tattgctaaa ggcatgcaat cgaggtchag      1080
     ggaggtcctc atccccctgt actcagccct tatccagccc ataattgagt acaatgcccc      1140
     vtttggdatg tacttgtcha agcacttggc tcagctagag agaccacagc attttataac      1200
     taagaggatt agtggtctcg agggtaaaca gtatgaagad tgtctaaaat cactgtcctt      1260
     vttctcagta gcatacagac tccttagagg tgatttgtgt ctcacbtatc gtgcattggc      1320
     aaaccbtgcc ttagctgatt tactacacat tagacactca aatggbaaaa ttc             1373
//
ID   CR1_F       repbase; DNA   ; VRT   ; 6509 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 2)
XX
DE   Gallus gallus CR1_F mother element.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1_F; non-LTR;
KW   retrotransposon.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RA   Smit A.F.;
RT   "CR1-F non-LTR retrotransposon.";
RL   Direct Submission to Repbase Update (SEP-2004).
XX
RN   [2]
RP   1-6509
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           1780..2853
FT                 /product="CR1_F_2p"
FT                 /note="ORF1"
FT                 /translation="MVSTRQRACTRKTVATQTEGLPRNVAVQVSGCRGCHS
FT                 LLLPREDGKDATCVRCEQVDELLSLVVELREEVERLRTIRECEREIDWWSD
FT                 SLRERCRDSVPQTVVDPFPCCSRAQRADSRQEKEWQQVPARKCRRPPPQPT
FT                 TVPQVSLHNRFDALKPEGEVSEDKVGRLPPSVTKVRRSAPRLKTASSKKER
FT                 KVIVVGDSLLRGTEGLICQPDPTRREVCCLPGARVRDISRKLPGLIHPSDY
FT                 YPLLIVQAGSDEVADRSLRAIKNYFRGLGRLVDNAGMQVVFAGIPTVAGKD
FT                 NAVTRKTHHINTWLRGWCKRKNLGFFDHGAIYLAPGLRFADGYHLSQRGKR
FT                 TLAQELAGLVERSLN"
FT   CDS           2859..5705
FT                 /product="CR1_F_1p"
FT                 /note="ORF2"
FT                 /translation="MRGEGDKTRPARDEPGGTIIGLGVRREAQLKCVYTNA
FT                 HSMGNKQEELEAIVQQASYDLVAITETWWDRSHDWSAAMDGYKLFRKDRQG
FT                 RRGGGVALYVKECFGVTELMTGDNKVESLWVKIRGRADKADILVGVCYRPP
FT                 NQDEETDELFYEQLVEAARSPAFVLMGDFNFPNICWEYNLAQKKQSRRFLE
FT                 YTFQKEDSFLMQMIREPTRGAAPLDLLFTNREGLVGDVEIGGCLGQSDHDM
FT                 VEFSILGGVRRRNSKTATLDFQRADFELFRRLVGRVPWGSVLESKGVQDGW
FT                 LLFKKEVLKAQEQAVPLSRKMSRRGRRPVWMNRELFLRLQEKKRIYLLWKK
FT                 GRATRKEYKEVIKMCREKIRKAKAQLELNLAAGVKGNKKLFYKYINSKRRT
FT                 RENLHSLLDEAGNVTTEDKEKADVLNAFFTSVFKSQTSYPQVSPLSDLAAL
FT                 AGEQTKPPTIHEETVRDLLHQLDCHKSMEPDEIHPRVLRELAEVIAEPLSI
FT                 IYQRSLLTGEVPEDWRLANVTPISKKGCREDPGNSRPVSLTSVPGKIMEQI
FT                 VLREITWHVQDNRGIRPSQHGFTKGRSCLTNLISFYDPVTRLVDEGKAVDV
FT                 VYLDFSKAFETVSHSILLQKLAVRGLDRYTLGWVRNWLEGQAQRVVVNGVK
FT                 SSWGPVTSGVPQRSVLGPVLFNVCIDDLDEGIECTLIKFADDTKLAGSVDL
FT                 PEGREALQRDLDRLDSWAEANGMGFNKTKCRVLHFGRSNPRQCYRLRAEWL
FT                 EDCVEEMDLGVLIDTRLNMSQWCAQVAKKANGILACIRNSVASRNREVIVS
FT                 LYSALARLHLEYCVQFWAPHCKKDIEALECVQRRATKLVRGLEHRPYEEWL
FT                 KELGLFSLEKRRLRGDLIALYNYLKGGCSELGVSLFSRVTVIEREGMASSC
FT                 AREDSGWTLGNTTSLKGWSGTGMGCPEWWWSHRAWWCLKSIWMLC"
XX
SQ   Sequence 6509 BP; 1708 A; 1359 C; 1804 G; 1638 T; 0 other;
     tgtcaggtct tgcattactc catatatatc tgtaggaaac tgaaatcatt actctgtagt        60
     gttatgaaca ctaaattgaa aacaaaaact taatccaaat ccccatattc tggattaaaa       120
     ctaactttat tttgaaagca agtatttttc tttgatgaat gcctcttttt tctttctagg       180
     ttactttgca acttgaagga tacagtagct ctctaccctg ctgagttttg aatttcagct       240
     tttagttgtt ttactttaat ctgagggaaa actcccatgt attcaaaaag gtataagcca       300
     tttaaaaagt atcaacaaaa atatgcttcc tctctgaacc tgcattcagt atccaacaat       360
     aaatttgaca ctgcagccac attttagccc cagatcagtc acaataaaca tcagttgcaa       420
     acctagcaac tcaaatcagc aaattcaata tcacttgtcc tagttctgct aaccttgccg       480
     tgaacctatc catttagtcc aagaggtcct aaccttcatt gctgcagaga ccagcttcag       540
     ggcaggtaag actgctctgg acaagggacc taaagcaaaa aggctgacca aaaagctctt       600
     tttagggctt ttttgaagct agcaaaagca ctataccggt gccggggggc tggcagcttg       660
     tgggcgggct actgagccag caggggcaga gctggcactg cccactctta tctcgcgagc       720
     tcgaccttga ccttttgctg tgtgactaga agcatctttg atagagtgga agctagcttc       780
     caccccctta actcactaga tgagaaatgg gtgttacctt ccaccgttaa caggaaggga       840
     gtcagtgtgt gagcgcagcc cacgctgccc atactgcagc agcaggtgtg ggaggtgggt       900
     cttgtggcag gatacgtgag tgtttctttt gttccttttg tcttcactta ggagacaagc       960
     tctcctacac agtccctgtg acctgcaatt tgaacatggc aggcagcagg cttgcaccag      1020
     gaagactgtg gcgacccaga ccgagggcct gcccagaaat gtggctgtct ggagagcaaa      1080
     gagttatcac tggcatgcca attacagtta acaaggagaa gcttggtctg ttggcaaggc      1140
     tacagggtgc cttatgtttt aatgacaacg gtgatcaaac actgcatgag tatgcttcag      1200
     aattaatata ttaatagtga gcaaaagagg tccctgtcca tgtgtaggag atgccgttac      1260
     agaaataatg caaatattga tagtaattag tcatggggat ctcagtgtag tctctctttc      1320
     tcttgtattc cttcacaatg tcatgtctta aaagaatcgt tggcttctat ggttaatttt      1380
     ttgtacttgg aaattttatt ttcattatcc tttcatgcag tgttttagac cttgggatta      1440
     tcaggactgc attatgtcat gtatgcatca tgtacttcag aaacttttta gcagatcact      1500
     tcagaagcag aagttgggat attagcaggg aggggtcacg gctatattgt cattcaagag      1560
     actgacaggc acttaggcca gttctgatga agcgacctaa acaaagtgag atgcttttgg      1620
     agggctgtag atctctcatg ttctcccccc attagtcctg actaatgtag gagcaagtgg      1680
     gtcttgtggc agtatacgtg agtgtttctt ttgttccttt cgtcttcgct taggagacca      1740
     gctctcctac ggacagtccc tgtgacctcc agtttgaaca tggtctctac caggcagcgg      1800
     gcttgcacca ggaagactgt ggcaactcag acagagggcc tgcccagaaa tgtggccgtg      1860
     caggtctctg gctgcagggg ttgccacagc ctgctgctgc cgagggagga tgggaaggat      1920
     gccacttgtg tgaggtgcga gcaggtagat gagctgctca gcctggtggt agagctcagg      1980
     gaggaggtgg agagattaag aaccatcaga gagtgcgagc gggagattga ctggtggagt      2040
     gactctctga gagaaagatg cagagattcc gtcccccaga ccgtagtgga ccctttccct      2100
     tgctgtagtc gagcacagag agctgattca agacaagaga aggaatggca gcaggtccca      2160
     gctcggaaat gcaggcgacc cccaccccaa cctaccacgg ttcctcaggt gtctctacat      2220
     aataggtttg atgccctgaa accggaggga gaggtaagtg aggataaggt gggaagactg      2280
     cctccaagtg tgactaaggt gaggaggtca gctccacgct taaagactgc ttcctccaaa      2340
     aaagaaagga aggtgatagt tgtaggtgac tccctactga gaggaacaga gggccttata      2400
     tgtcagcctg accctacccg cagggaggtg tgctgcctcc ctggggcccg ggtcagggat      2460
     atttccagga aacttcctgg tctgatccac ccctctgatt actatccatt attgatagtt      2520
     caggctggaa gcgatgaggt tgctgacaga agcctgaggg ctataaagaa ttattttagg      2580
     ggactgggga ggttagttga caatgcaggc atgcaagtag tatttgcagg tattcctaca      2640
     gtggcaggga aagataatgc agtgaccagg aaaacccatc acataaacac atggctgaga      2700
     ggctggtgca aacgcaagaa tctcgggttc tttgatcatg gggcgatcta cttggcacct      2760
     ggcctgaggt ttgcagatgg gtatcacctg tctcaaaggg ggaaacggac ccttgcccag      2820
     gagctggcag gacttgtaga gaggtctttg aactagacat gaggggggaa ggggataaaa      2880
     ccaggcctgc tagagatgag cctgggggaa cgataatagg attaggggtg aggcgagagg      2940
     cccagctaaa gtgtgtctat accaatgcac acagcatggg caacaaacaa gaagagttag      3000
     aagccattgt gcagcaggca agctatgacc tagttgccat tacagaaacg tggtgggacc      3060
     gctcccatga ctggagtgct gcaatggatg gctacaaact cttcaggaag gataggcaag      3120
     gaaggagagg tggtggagtg gctctctatg ttaaagagtg ctttggggtt actgaactta      3180
     tgactgggga taataaggtt gaatccttat gggttaagat caggggaaga gctgacaagg      3240
     cagacatcct ggtgggcgtc tgttatagac cgccaaacca ggatgaagag acagatgagt      3300
     tgttctatga gcagctggtg gaagctgcac gatcgccggc ctttgtcctc atgggggact      3360
     tcaacttccc caacatatgc tgggaataca atttagcaca gaagaagcag tctaggaggt      3420
     ttctggaata tacattccag aaggaggaca gcttcttgat gcagatgata agagaaccta      3480
     cgagaggagc tgccccatta gacttgctgt tcacaaacag agaaggtctg gtgggagatg      3540
     tagagattgg gggctgtctt gggcagagtg accacgacat ggtagagttc tcgattcttg      3600
     gtggagtcag gaggaggaac agcaaaactg ctaccttgga cttccagagg gcagactttg      3660
     aattgttcag gagactagta gggagagtcc cctggggttc agtcttagag agtaaagggg      3720
     tacaagatgg ctggttgctc ttcaagaagg aagtcttaaa ggcgcaggag caggctgtac      3780
     ccctgagccg caaaatgagc cggcgcggaa gaagaccggt gtggatgaat agggaactat      3840
     tcttgaggct ccaggagaaa aagagaatct acctcctgtg gaagaaggga cgggcaaccc      3900
     ggaaagaata caaagaagtt attaagatgt gcagggagaa aatcagaaag gcaaaagccc      3960
     agcttgaact caacctggct gctggggtaa aagggaacaa gaaactcttt tacaagtata      4020
     tcaacagtaa gaggaggacc agggagaatc tccattctct actggatgag gctgggaatg      4080
     tgaccactga ggataaggaa aaggcagacg ttctgaatgc cttctttaca tctgtcttta      4140
     aaagtcagac cagttatcct caggtttctc cactctctga cctggcagcc ctggctgggg      4200
     agcagactaa acctcccaca attcacgagg aaacagtcag agacctgcta caccaactgg      4260
     actgccacaa gtccatggaa ccagatgaga ttcacccgag agtgctgagg gaactggcag      4320
     aggtgatagc cgagccgctt tccatcatct atcagcgctc cttgttgacg ggtgaggtcc      4380
     cagaagactg gaggcttgcc aatgtgactc ccatctccaa gaagggctgc agggaggatc      4440
     cggggaactc caggcctgtt agcctgacct cggtgccggg gaagattatg gagcagattg      4500
     tcttgaggga gatcacgtgg cacgtgcagg acaaccgggg gatcaggcct agccagcatg      4560
     ggttcacgaa gggcaggtcc tgcttgacca acctgatctc cttctatgat ccagtgaccc      4620
     gtctggtgga tgagggaaag gctgttgatg tagtctacct agatttcagc aaagcctttg      4680
     aaactgtctc ccacagtatt ctcctgcaaa agctggcagt ccgtggcttg gacagataca      4740
     ctcttggctg ggtaaggaac tggctggagg gccaggccca gagagtggtg gtgaatggag      4800
     ttaaatccag ctggggaccg gtcacgagtg gtgttcccca gaggtcggtg ctggggcctg      4860
     tcctgtttaa tgtctgtatt gatgacctgg atgagggcat tgagtgcacc ctcattaagt      4920
     ttgcagatga caccaagcta gctggaagtg ttgatctgcc tgagggtaga gaggccctac      4980
     agagggatct ggataggttg gatagctggg ctgaagccaa tgggatggga ttcaacaaga      5040
     ccaaatgccg ggtcctgcac tttggccgca gtaaccccag gcaatgctac aggcttaggg      5100
     cagagtggct ggaagactgt gtagaggaaa tggacctggg ggtgttgatt gacactagac      5160
     tgaacatgag ccagtggtgt gcccaggtgg ccaagaaggc caatggcatc ctggcttgta      5220
     tcagaaatag tgtggccagc aggaacaggg aagtaattgt ctccctgtac tcagcactgg      5280
     cgaggctgca ccttgagtac tgtgtccagt tttgggcccc tcactgtaag aaagacattg      5340
     aggccctgga gtgtgtccag aggagggcaa caaagctggt gaggggtctg gaacacaggc      5400
     cttatgaaga gtggctgaag gagctgggat tgttcagtct ggagaagagg aggctcaggg      5460
     gagaccttat tgctctctat aactacctga agggaggttg tagtgagctc ggggtcagcc      5520
     tcttctctcg tgtgacagtg atagaacgag agggaatggc ttcaagctgc gccagggaag      5580
     attcaggctg gacattagga aatactactt ctctgaaagg gtggtcaggc actggaatgg      5640
     gctgcccaga gtggtggtgg agtcaccgag cctggtggtg tttaaagagc atttggatgt      5700
     tgtgttgagg gacatggttt agtgagaacc attggtgaag ggcgaatggt tggactggat      5760
     cctgtgggtc ttttccaacc ttagcgattc tatgattctg tgattctgag tttgttgaaa      5820
     cctgcagaac agctgccatg tccttccact gagaggctgt ggctattcct catttaattg      5880
     tctgtcgaca ctctgtcaaa cagcaaggga ggcactctgt ttgcacctgt gaacaagctg      5940
     tgcctcagcg aatgctcata ttctctcaga agatgcatgt tcccaaggag aaaagacttt      6000
     cagtgtcaaa tcttccacac ctattagtgg ctaagcctcc aggcccatgt atacatgttt      6060
     ctgatgggct gacagatttt tggtgtctca gcatccgtgt tcagagcaac tgagaatgct      6120
     tcaaatggca ggatcatcct caatcaataa gtttagtacc actgctgcct gctatttgca      6180
     tcataagaga gtcttgatgg actgccttta attcatatga tacaaatatc tataaaaatc      6240
     actcttttgt atctagtggt tttttttgtt tgtttgtttg tttgtttgtt tttttgtggg      6300
     attgttttca tcacatctca acatatttaa taaagtgtat aggactcctt ggaggacttg      6360
     ctgttatctg acatcttagc atgattagaa acacagatct tacagggaga atctactgtg      6420
     tactggagct ctttatcaga tattcttcct cccctttagc aggaggcttg atcaggtttt      6480
     tcattttgag aatcacattg aagagataa                                        6509
//
ID   ONSAT       repbase; DNA   ; VRT   ; 209 BP.
XX
AC   X56051;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Satellite DNA; highly repetitive tandemly arrayed repeat.
XX
KW   SAT; Satellite; Simple Repeat; ONSAT; satellite DNA.
XX
OS   Oreochromis niloticus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Labroidei; Cichlidae; Oreochromis.
XX
RN   [1]
RP   1-209
RA   Franck P.J.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (04-OCT-1990). Franck
RL   J.P.C., Dept. of Biology, Dalhousie University, Halifax, Nova
RL   Scotia B3H 4J1, Canada.
XX
RN   [2]
RP   1-209
RA   Franck P.J., Wright M.J., McAndrew J.B.;
RT   "Genetic variability in a family of satellite DNAs from tilapia
RT   (Pisces: Cichlidae).";
RL   Genome 35(5), 719-725 (1992).
XX
DR   GenBank; X56051; Positions       1     209.
XX
SQ   Sequence 209 BP; 59 A; 43 C; 43 G; 63 T; 1 other;
     aattctataa ggccaagcct gaaatatgtg tgtccgagtc tcctatcaaa agttacagct        60
     gtctttatgg acttggtgga aaatcgcctt atttcggcga gacagtgcgt ttctcgcctg       120
     aaacacatta tgggttttca ttttgtgaat aacttgaaaa gcttagctca aacagctgca       180
     aaacctattt ncccagcatg gaaatgctg                                         209
//
ID   XLLINE      repbase; DNA   ; VRT   ; 654 BP.
XX
AC   M24187;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Repetitive element; CR1-like LINE.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1-like LINE;
KW   XLLINE; pol portion.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-654
RA   Spohr G., Reith W., Crippa M.;
RT   "Structural analysis of a cDNA clone from Xenopus laevis
RT   containing a repetitive sequence element.";
RL   Dev. Biol 94, 71-78 (1982).
XX
DR   GenBank; M24187; Positions       1     654.
XX
SQ   Sequence 654 BP; 198 A; 123 C; 167 G; 166 T; 0 other;
     tggataggaa attggctaca agatcgggta caaagggtgg ttgttaatgg gacattctct        60
     acttggagta aggttcttag tggggttcct cagggctcgg tattgggtcc acttttattt       120
     aacttgttca ttaatgactt aggggagggt gttgtaagta atgtatcagt gtttgcagat       180
     gacacaaaac tatccagccc aattaattcc atccaggatg tggcatcctt gcaacaagat       240
     cttgacaaac tggcaatctg ggcagataag tggcaaatag attcaatgtt gataaatgta       300
     aagtcatgca cctgggatgt agcaagcaat gccagtcgca gcatcaaggg caaataaggt       360
     cttgagctgt attaaaaggg gcatagagtc acgggaggag ggggtcattc ttccactgta       420
     tagagcactt gtaaggcccc atctagaata tgccgtacag ttttggtctc catcactcaa       480
     acaggacatt attgtattag agagggtaca gagaagggca actaagctat gaggaaagac       540
     tggccaaatt tggggatgtt cacgctggag aagaggcgct taaagggcac ctatcacagc       600
     caaaatcaaa cacatattga caatctgacc agtacaagct aaacacgtcc ccct             654
//
ID   Birddawg_LTR repbase; DNA   ; VRT   ; 341 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 2)
XX
DE   Birddawg (GGERVL18) retrotransposon, consensus LTR sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; Birddawg_LTR;
KW   GGERVL18; LTR; retrotransposon.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-341
RA   Smit A.F.;
RT   "GGERVL18 retrotransposon, LTR.";
RL   Direct Submission to Repbase Update (SEP-2004).
XX
RN   [2]
RP   1-341
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [1] (Consensus)
XX
CC   Estimated 7,404 copies of Birddawg elements in the chicken
CC   genome. Wicker et al split Birddawg LTR into 6 subfamilies
CC   that range from 79% to 93% similar to this consensus sequence.
XX
SQ   Sequence 341 BP; 76 A; 84 C; 83 G; 98 T; 0 other;
     tgtatgggaa ctgttgaatc acggcctgaa cctctgattg atcacctgag gcaagcactg        60
     agtcagccgc gggagcacag gtgaaggcaa ttcacctgtg tgaccggaag gggtggagcc       120
     tggctccacc tctcctagac cccatttaag ggctgactgc cactgaggaa ggatctcttt       180
     ctggagatcg ctcctcttgg agttttttct gtgagcctag gacacgggtg agcattttca       240
     tttatttctg attatccctt tccaacgtga taatctttct agctgtacga tctgtggata       300
     ccagcctaac cacaccactc tgtatatttg ttgattatac a                           341
//
ID   GGLTR11_I   repbase; DNA   ; VRT   ; 6481 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Internal portion of ERV1 Endogenous Retrovirus from chicken.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-6481
RA   Smit A.F.;
RT   "GGLTR11_I - ERV1 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000673, GG000475-7, GG000364, GG000095 part 8-10% subst
CC   Contains damaged, partial coding regions (bp 1452-2804; closest
CC   to the human HERVP71A pol polypeptide)) and a partial ENS coding
CC   region (see ENS element in database; 53% dentical product (68%
CC   similarity)) erv.
XX
SQ   Sequence 6481 BP; 1930 A; 1295 C; 1518 G; 1722 T; 16 other;
     gtttggtgcc gaaacccggg aacaacgtcg cctgcggtga gcctccgcct ctacagcaca        60
     ggacggtgca ccccgctcnt ntttctgcag ccctgtgggt tggcggtggt ggttcatcgt       120
     ggagccggct gcggacccga ggatgttttt aagaggcaag atctgtgaac agctggggga       180
     tagggacgga cagcgggcac tgcggtgttg tgtgattgac ctgataattc ctggcaactc       240
     tgtgcacaga ccaaggtaag aacaatcatg tgtgattaag tactgccttg gaggtcgagg       300
     tctgggactc ttatgctgta cgcgaacgtc ttgcaaaaag ggttgcttga cggtacacct       360
     cattttctag aaccgagaat tggtgtgcgc gacgctgcag aagagcagtt cctgcagtag       420
     cacgaccata ggttgctgag agaaatgggg aataagagtt ccaaggtggg ggacagagag       480
     agggcccccg gggcagtgcc tgctataagt cctttaggaa gtatgatgaa aaattggaag       540
     agaaattcga gaaccaggga taaggataaa cagaaaatga ttagatattg tgttgttgta       600
     tggcctgaat aaccaattgc aggggaatca gtattttggc caaaatacgc gtctgacgag       660
     gatcgcattt gtcaggcttc aaacgtgcac gtaaacagta aaactccttt atttattatt       720
     ttnttgtttt gttttggagg aggagtccgc atatgctgct tgttggattc agggagtaca       780
     gcagttaatc atggctagac aaaattctgt agataaggaa gaacagagaa accccagatg       840
     ggatccttta agctgtttac tccctgtacc tttccctagg attaaactca ctcgctttcc       900
     tctatggaat ggcgttcccc ccccttacca tcctggcctc gagtcaagtc ctgtaactac       960
     aggagggagg ctggagacag ctgacagagt ggagggtatt ggctcggatc agccccttaa      1020
     cagcccacct gaaccgagct ctgtgactag tgctgatgct gaaaagaaaa agttctgcca      1080
     gcttgagaaa gaattggaac aatgcaaaag ggatattata aattctccct ttcctaaatc      1140
     taacnccatt aaccccacta acacttccat gtatcctctt agggaagttc caatgttatc      1200
     aggagatata ggatatgtaa actccccact tactagtgga gaggtgagaa attttaaaag      1260
     ggaaatgaaa tcnttaatga aagatcctat tggattagca gaacagtttg atcaattctt      1320
     ggtcatcttt agcttataaa atactgggac ttaatttaac tgggaacacc ttaagaataa      1380
     caggggtaga gggatcagga atgatagttt cactttttga gactactgaa ttaaaatggg      1440
     aagataaaat agtcacaggg caattgttat atgtgccaga agcagggacc aattcactgg      1500
     ggagagattt aatagttaaa ttaggattgc agttgaaaac ttgtgaaaca ggtataaagg      1560
     tgtcaatgaa tttgttaaca gctgatgatg aaaaagaaat aaatccaaag gtgtgggcag      1620
     gggaaggaaa ccggggtgga ctcacaatta ctcccttaaa aataactgtc caaggaggga      1680
     gtgaagctgt gaaacagcga caatatccca tacctttaga aaggataatg ggtctaaagc      1740
     ctgtaataca aacattggtt aaggatggtc ttctggaact ctgtatgtca ccctataaca      1800
     ctccaatttt gccagtacag aaggcagatg gcacctatng gctggtgcaa gatctaagaa      1860
     aaattaatga aatagttctc aagcgacacc ccctggttcc taacccctat actttaatga      1920
     gtcngatccc acangaacat aaatggttta gtgtaataga cttaaaagat gctttctgga      1980
     cctgcccttt ggactcagag agtcgagatc tttttgcctt tgaatgggag gacccagaaa      2040
     cgggacgaaa gtagcaatat aggtggattg ttttacccca agggttcacg gaatcaccta      2100
     atttatttgg acaagtgctg gagaaagttt tggaaaagtt tcaggttgaa gagggggtaa      2160
     agctgttaca gtatgtggat gatttgctga tttgtggaac agaggagtct aaagtaaaag      2220
     agactacaag taaactcctg aatttcttgg ggaacacggg ctaagggtgt ctaaaaataa      2280
     actgcagtat gtggaaaaag aagtcagata ccttgggcat gtgatttctg aggggaaacg      2340
     gagaataaat tctgaaagaa ttcagggnat tgtgcagctt cctctgcccg ggacaaagag      2400
     ggagttgcga aagtttctag gtttaattgg atactgtaga ttatgaatag aagcatatgc      2460
     acaaaaaaaa aaaaaagaga ttgtatctca aactatcaga gggagaaccc aacatattaa      2520
     aatggacaaa agaggaaaaa gaattagtag aagtattgaa acgggactta atcacagcac      2580
     ctgtgttaga actgcctgcc ttaaagaaac catttcacct ttttgtaact gtcagtgaag      2640
     gagctgcttt aggagttcta acacaagaat ggggagacaa aagaaaacct actgcatact      2700
     tgtctaagct attagaccct gtatctcgag gntggcccga atgtgtccag gtggtagtag      2760
     caactgcctt attggtagaa gagagtacgt gtgtaccctt cgggggtgta aggagcaaat      2820
     tgttgagttg ttgataatac gtttcccccc cgcgaagaga ttgctccaca ttttgaggca      2880
     tgatcgttaa caaaaaaaaa aaaaaaaaaa ggaacgaggg caggaatccg ctcctcgacc      2940
     tcttagaaaa acacggtgcc aaaccctccc ccgtggagat ggagtgggca cagaataatt      3000
     ggtccaactt agagggagtc gcggatcata taaattccct ccacaagcaa actcgtatgg      3060
     gggagggaaa gggaaaatca atcatttgtg cagttctagg agctgctctt actgctgccg      3120
     tagagatccg caacgaacag cacacggcag aaacccaaat tattcagtcc ttgcaggaat      3180
     tggtcacata cctgcaggac caagtagaag atcttagggg acagtcagaa aaagaaaaac      3240
     attcaaaagt cctccttcag caagccctta gagaacagtt ggtaaatgag agggagatta      3300
     atgctagttc cccaggtagt gacttttatc caggagaaag tctggaggat gtgagagccc      3360
     aaaaagacaa atcagaaaac ctggtgaccc ttctctgccc tccgatagaa actgggcatg      3420
     catatgaaga gagcgaaggt gggtactctg atgttagtat caaggaggtc ccctattctg      3480
     ctaccgagct ggccaaatta aagaaagatt ttggtcacac ccctaggaaa tcagagacag      3540
     agtatgtgtg gaaagtgcca ctaacagggg gagancagat cctgttgatt gaaaaggaat      3600
     cagagggtta ctggggacct ggaatatttt tcaccactgg caaccactgt gccccgtggt      3660
     cccttactca aagagctgct tattgggatg attactcccc gggacaactg atgttgattg      3720
     atttgcccca cattggtcct gtccctttaa ccctcaaaga gcctcttaac aaatacatct      3780
     ggaaggctca agacgatcag gggaaaatgt acaaaattaa ccatctggat ttcacctacc      3840
     ttctaacttt ggttcatttg ggaccaggaa agtttttttt gttttgtttt gttttctttt      3900
     ccagttatgc tttctctaac cttggttcct ctggaaccgg gaagttctct ctcttttgtt      3960
     ttccagatgc taacgaatgc tgatcctgtt gctgtgcctc acatgttccc ttctcaccct      4020
     gctcctttcc ctgggatccc tgtggtatca ttaatgtcac tgtttcggac aggcatcttc      4080
     ttcagattaa tatttgcaat tgcttatgct gaccctatca cattcactgg ctggtcacgg      4140
     tcccatgccc atattgggca tactgggcgt atgggaccga attctaattc taacagaggc      4200
     ttaacccttt caaccacggt taagcacagt aatgaaatat attcaggaaa tgaatggggc      4260
     caggatagta ctggccgact cccccaactc cngggagatg caggacgaag aataaaagta      4320
     gggtgtcgga tgcaacaagt gatctatgtg cattgcaaca cccctgcagt cttccctatc      4380
     agcactggga accaaccagc ggttcttatc taatgtatta tctcaatggg aaagaactaa      4440
     tataaaagac caccagttaa ttgtagatgc acttgccata actcaaaata atgtctccct      4500
     agctcttagt tgtagaaggt aaaggaaacg ctttacccac tgaaattcga aaggtgattt      4560
     gggacaatgc aaacaaattt gaaagagaat ttcaatctta gtggcatcta gttaatttta      4620
     cttatgatcc tgttaataac tntgctacag cttttgtcct aacaatacgc aatgcttcgg      4680
     tatataccat atacccaatc attgcgctgg gactgaatca caatggggtt atactctacc      4740
     cattagaana cagagtatgg gcccaacaaa atggaaacaa atggcaaact gttgatgtta      4800
     gttcatgtgc tgtatgggaa caacaaggat ttatttttgt gagagtaata ccatcaaggc      4860
     tcaagacatt tgtcttgaca ctgagcaaag tatttgccgt tttnagaggt atcccaatga      4920
     gacccctgaa atagtgctca tctatattgg aaaaggatgt gtgtgtatga gaacctcttg      4980
     taactttata ctcataggta atattactgt agatacaagc aatcattcaa atgtctgtgt      5040
     ttgtaacttt actaacatta tgggatgtga ctttaattat tcagttccag ttacgtcata      5100
     tcagttgttg tggtccaatt acacattaat ccaagatttg ccacctgccc caattggaat      5160
     gaatcttgct ttagtaaaga aattactgca acatgacgat ctgtaccaac tgctagaacg      5220
     catccgagat aacggacaaa aaaacctcta attactgttc accatgatac aaaagagatg      5280
     caccatgtcc tggaaagggt gaagaaggat ggagaacacc actggtggga aacgctcctt      5340
     ggatggtcac caacagcaag aggagttttt aattctgtgc ttcacccagt tgtgatctta      5400
     ttaatcctaa cattgatgtg tttattgctt gtaatcatat tatatgtgaa agtctggcag      5460
     atgctgaggt gactggcccg gctcgaatta cccaaggagt ctgaaagttg gcctaggtat      5520
     tagattactt ttcctagcct cctggtgatc catgggtaag gcgagttctg ttatgcgcat      5580
     tggcggcact cacgttttgc tcctttgctt ttatgtgatt ttaacatgta tctttccctt      5640
     ctcccctcat tcccctcaat gctttttttt cttaaaacca ccatgggaca gtgataacaa      5700
     gctttgcacc gccgggtggt gtgagaagca gnaacaatgc ttggctcaaa gcttgttcag      5760
     cggcacccat ccgaggcatg agaagctgga gaatgcttgg ctcaaagcct gttcaacggc      5820
     acccatccaa ggcatgacct gcccaacaag tttttgaagt taatggttga ctaccatgag      5880
     cacagtggta agaggacaga cgtgctgttc ctcctgatga acaaaaatgt gggtaccccg      5940
     acagctacca tcaccgtgat ggacaggaca tgatgcccct gataattggg gtagtcgggc      6000
     ccgaagagtt ctgaggaaga acgggtaccc catctgccaa aatgcagcca tgtaagtcaa      6060
     cgagacgtcg ctgaccaacc tgctgcctcc ccatggacca acgagacatc gccggattcc      6120
     ctggtggtga ctatccctgc tctgtaaacc gtttgctaga atttctttct ttactatcgc      6180
     taacttcccc atcttcccca catcccttag tagcttagaa cctgtaatgc tgattatgct      6240
     ctgattcaag acttactacc tgttcatact gggatgaatc atacaagggt gaagaaattg      6300
     ttattcttaa tcaatatata tatattagag tatggagaat agcaagatga taaattatta      6360
     ttatcaatca tcaagtcggg ttagtaaggt agttttctta tattagaagt gtttcatagt      6420
     ctggtgcaaa aacacaaaaa gggtaaaaag aaaaagaggg ggaattgtga gaggtagatt      6480
     g                                                                      6481
//
ID   CR1-H2      repbase; DNA   ; VRT   ; 1239 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   CR1 Non-LTR Retrotransposon from chicken.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1-H2; CR1_F.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-1239
RA   Smit A.F.;
RT   "CR1-H2 - CR1 Non-LTR Retrotransposon from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1239 BP; 278 A; 248 C; 410 G; 303 T; 0 other;
     ttcattctat gacaaggtga cccgcttagt ggatgagggt caggctgtcg atgtggtcta        60
     cctggacttc agtaaggcct ttgacactgt cccccataac attctcgtgg agaagctggc       120
     tgcccatggt ctggatgggt gtacgctccg ctgggtgaag cactggctgg atggccgggc       180
     ccaaagagtc gtggtcaatg gagttgaatc cagttggcgg ccggtcacga gcggtgtccc       240
     ccaaggctca gtgctggggc cgcttctgtt taacatcttc attgatgatc ttgatgaggg       300
     gattgagtgc accctcagta agtttgcaga cgacaccaag ctgggaggga gtgttgatct       360
     gccagagggg agaagggcac tacagaggga cctggataga ctggatcgat gggccaaggt       420
     taacggcatg agtttcaata gggccaagtg tcgggtcctg cattttggtc acaacaaccc       480
     caggcaaccc tacaggcttg gggaggtgtg gctggaaagc tgcctgatgg aaagggacct       540
     tggtgtactg ttggacagtc ggctgaatat gagccagcag tgtgcccagg tggccaagaa       600
     ggccaatggc atcctggctt gtatcaggaa tggtgtggtg agcaggacta gggaagtcat       660
     cctgcccctg tactcggcat tggtgaggcc tcacctcgag tactgtgttc agttttgggc       720
     acctcagtac aagaaggaca tggaggtact ggagcaggtc cagagaaggg caacgaggct       780
     agtgaagggc ttggaaaatc agccctatga ggagaggctg agggagctgg ggctgtttag       840
     tctggggaag aggaggctga ggggagacct tattactctc ttccagtacc tgaaaggtgt       900
     ttacagtgag agcggggtag gtctcttctc actggtgaca ggtgacaaga cgaggggaaa       960
     tggcctcaag ttgcgccaag gtaagtttag gttggacgtt aggaaacact tctttacaga      1020
     aagggtggtt aagcactgga ataggctccc cagggaggtg gttgagtcac cgtccctgga      1080
     tgtgtttaag agccgtttgg atgtggtgct cagagatatg atttagcgga gggttgttag      1140
     agttagggta ctatggttag gctgcggttg gacttgatga tctttgaggt cctttccaac      1200
     ctgagtaatt ctatgattct atgattctat gattctatg                             1239
//
ID   GGLTR10D_LTR repbase; DNA   ; VRT   ; 347 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV2 Endogenous Retrovirus from chicken.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; GGLTR10B_LTR;
KW   GGLTR10D_LTR; LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-347
RA   Smit A.F.;
RT   "GGLTR10D_LTR - ERV2 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   LTRs of GGERVK10-derived non-autonomous element; 1-2% div.
XX
SQ   Sequence 347 BP; 103 A; 67 C; 101 G; 76 T; 0 other;
     tgttgtagta agcgtcttgc gggggcacgg gatgtacggg acaggcctct ccctaagcat        60
     agagagacag tgctatcgtg ctgaccttga tgcagagaaa acaggagaag aagaagaatg       120
     agaaaagaat gtggagacgg ccaaataggg cacggtgttg tctggtatga accaatcaga       180
     gtgggacatg acagcacggt tttgtaggta aaaatgtaat ataagctgtg ttttagtagt       240
     gaatagaggc cattttaccg ctcatcatat tggtgtcacc tcggtatatg gccaagccgc       300
     aggctcccct aagcaacgaa catcacggtt gcctgcgaaa ggcaaca                     347
//
ID   VI_XL       repbase; DNA   ; VRT   ; 488 BP.
XX
AC   X59370;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   X.laevis repetitive element Vi.
XX
KW   Repetitive element Vi; VI_XL; XLVI.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-488
RA   Deen M.P.;
RT   "VI_XL.";
RL   Direct Submission to Genbank (03-MAY-1991)P.M.T. Deen, Univ of
RL   Nijmegen, Toernnooiveld, 6525 ED Nijmegen, THE NETHERLANDS.
XX
RN   [2]
RP   1-488
RA   Deen M.P., Terwel D., Bussemakers J.M., Roubos W.E.,
RA   Martens J.G.;
RT   "Comparative analysis of the transcriptionally active
RT   Proopiomelanocortin genes A and B of Xenopus laevis.";
RL   Unpublished.
XX
RN   [3]
RP   1-488
RA   Deen M.P., Roubos W.E., Martens J.G.;
RT   "Presence of Vi-transposon-like elements in the
RT   proopiomelanocortin gene A of Xenopus laevis does not affect gene
RT   activity.";
RL   Mol. Gen. Genet 230, 491-493 (1991).
XX
DR   GenBank; X59370; Positions    1972    2459.
XX
SQ   Sequence 488 BP; 149 A; 84 C; 88 G; 167 T; 0 other;
     tttggggaga gaatttgcaa tgggtcgaag ttgaattcaa gggaattttg aagtaaaaaa        60
     ttcgaaattc aaagtaagtt tttggatact tcagaccatc gaataggata ctacgacttc       120
     gaatttactt cgacttcgat tctaagtaaa aatcatttga ctatttggcc attcgataat       180
     cgaagtactg tctctttaaa aaaaacttcg acttcaatct tcgtcaaatt aaacctgcgc       240
     agtgctatct tagcctatgg ggaccttcta caaccatttg gggaccttct acaatttcta       300
     agtctttaga ggtcgaagga aaatccttcg attgattgct aaaatcgttt gtatcgaacg       360
     atttttattc gacagtagga ttgacaaatt tgctgaaaaa acttcgaatt cgaagttttt       420
     taattcgatg atcgaatttt gacgtttttt gtacttcgaa attcgaccct tgataaatct       480
     gccccttt                                                                488
//
ID   LINE2_PM1   repbase; DNA   ; VRT   ; 632 BP.
XX
AC   .
XX
DT   28-MAR-2002 (Rel. 7.02, Created)
DT   28-MAR-2002 (Rel. 7.02, Last updated, Version 1)
XX
DE   Python molurus non-LTR retrotransposon LINE2 reverse
DE   transcriptase pseudogene - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; LINE;
KW   LINE2_PM1; retrotransposon.
XX
OS   Python molurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Henophidia;
OC   Pythonidae; Python.
XX
RN   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol 18(12), 2213-2224 (2001).
XX
RN   [2]
RP   1-632
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_PM1: non-LTR retrotransposon LINE2 reverse transcriptase
RT   pseudogene from Python molurus.";
RL   Direct Submission to Repbase Update (12-MAR-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 632 BP; 120 A; 156 C; 167 G; 189 T; 0 other;
     gacctctcag cggctttcag taccattaat aatggtatta ttctggactg gctcttggag        60
     ttgtgggtgg gcggcactgt gttgggttgg ttcttctact tcctcctggc tggttccagt       120
     cagtgttgat ggaaggacag gtccagctca tgggtctcta ttcagtgggg tactgcagag       180
     ttcggatctt tctcccctcc tgtttaacat ttacatgaag ccgctggcta gtcatgcaat       240
     agtctggtgt gaggtaccag tatgttgaag atacccagct ttatatctcc accccagggc       300
     cacctaagtg atgccatgga cgtcctgtcc aagtgcctgg aggatgtggg ggcctggatg       360
     gggcacaaca ggtttcggct caacccaagc aagactgaat agctttgggt ttttcgacct       420
     tctggtgctg aggatcttcc atctttggtt ctggatgagg tgacactgcc tcaaatagac       480
     caagtacaca atctggggtt ctcctggact cacggctcct gctcaaacag ggcctttgca       540
     taccttcagg ttgtgtatct gtttctggac tgggaggccc tgttcacttt cactcatgcc       600
     tcttgtgact ctcccacctg gactattgca at                                     632
//
ID   GGCAN       repbase; DNA   ; VRT   ; 336 BP.
XX
AC   .
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Gallus gallus repeat.
XX
KW   (CA)n related; GGCAN; repeat.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-336
RA   Kapitonov V.V., Jurka J.;
RT   "GGCAN.";
RL   Direct Submission to Repbase Update (MAR-1997).
XX
CC   [1] (Consensus)
XX
CC   (CA)n are masked by x's.
XX
SQ   Sequence 336 BP; 67 A; 89 C; 63 G; 82 T; 35 other;
     gatcccatca ctgctctgcr gcagctcttc aaaacataaa gcagtcttga gggcattctt        60
     agttcagcag cttgccggtc attcaggtgg caatcacaac gctcctgctg tccntactgt       120
     gctatttata cataaggtgg ttgagccttc tctcagcttc tccacccatg gtgtttgctt       180
     acatgcaaag cctacctccc agcagccaca gtcncaxxxx xxxxxxxxxx xxxxxxxxxx       240
     xxxxxxxxca cacgtcatag aatcagctcc ttgctttggg tgccttaggg ccagacatag       300
     ctcagtgcct cctgctactt gctgagaaaa gtgatc                                 336
//
ID   Gypsy1-LTR_ST repbase; DNA   ; VRT   ; 428 BP.
XX
AC   AC146867;
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   Long terminal repeat of Gypsy1_ST retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   Gypsy retrotransposon; Gypsy1-I_ST; Gypsy1-LTR_ST; LTR;
KW   Tf1 group.
XX
OS   Xenopus tropicalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Silurana.
XX
RN   [1]
RP   1-428
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy1_ST, a self-primed Gypsy LTR retrotransposon from the frog
RT   Silurana tropicalis.";
RL   Repbase Reports 4(1), 26-26 (2004).
XX
DR   Genbank; AC146867; Positions   63400   62973.
XX
CC   Gypsy1-LTR_ST is a long terminal repeat from the Gypsy1-I_ST LTR
CC   retrotransposon.
XX
SQ   Sequence 428 BP; 71 A; 139 C; 106 G; 112 T; 0 other;
     tgtcatgaat cggcgacgct ccctacctgc tcctgtgcgg cggcgtcctt cctcccggcg        60
     cggcgaatcc aagatggcgg cgcccagggc tccacgtggg cgcagggacg ccggcgcaat       120
     gacgtcacgc gctatggcgc caaattcaaa cttaaaagga cgccagagac ccaggttcaa       180
     tgcccgagta tagctcaaca tacctattgt gttcctgggt ctctaatatt cttatctgct       240
     tcctgttgct gtttatttgc ctgttcctga ccttgaacct tgctgcctgc ctttagtgac       300
     ctttgcctga acctgacctc tctattggat tatcctgcat ctgtacttcg ctcggactcg       360
     ctggaagcgg ccttcctcct tgatcctgac ttcacctctc ccgtgggtgc cggaggcccc       420
     cgctgaca                                                                428
//
ID   CRYI        repbase; DNA   ; VRT   ; 213 BP.
XX
AC   .
XX
DT   05-2005 (Rel. 10.11, Created)
DT   05-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   CR1-type SINE element from Testudinodinea superfamily (a
DE   consensus).
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   Non-autonomous; GRTE9.
XX
OS   Testudinoidea
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Testudines; Cryptodira.
XX
RN   [1]
RP   1-213
RA   Sasaki T., Takahashi K., Nikaido M., Miura S., Yasukawa Y.,
RA   Okada N.;
RT   "First application of the SINE (short interspersed repetitive
RT   element) method to infer phylogenetic relationships in reptiles:
RT   an example from the turtle superfamily Testudinoidea.";
RL   Mol Biol Evol 21(4), 705-715 (2004).
XX
RN   [2]
RP   1-213
RA   Endoh H., Nagahashi S., Okada N.;
RT   "A highly repetitive and transcribable sequence in the tortoise
RT   genome is probably a retroposon.";
RL   Eur J Biochem 189(1), 25-31 (1990).
XX
CC   [1] (Consensus)
XX
CC   Replaces GRTE9.
XX
SQ   Sequence 213 BP; 47 A; 40 C; 67 G; 59 T; 0 other;
     gggggggagg gatagctcag tggtttgagc attggcctgc taaacccagg gttgtgagtt        60
     caatccttga gggggccact tagggatctg gggcaaaaat ctgtcaggga cagtacttgg       120
     tcctgctagt gaaggcaggg ggctggactc gatgaccttt caaggtccct tccagttcta       180
     ggagataggt atatctccat ttattattat tat                                    213
//
ID   TC1_PP      repbase; DNA   ; VRT   ; 1634 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Tc1-like transposon from Pleuronectes platessa (plaice) - a
DE   consensus.
XX
KW   DNA transposon; Interspersed Repeat; TC1_PP; Tc1-like transposon;
KW   pseudogene; transposase.
XX
OS   Pleuronectes platessa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Pleuronectiformes;
OC   Pleuronectoidei; Pleuronectidae; Pleuronectes.
XX
RN   [1]
RA   Leaver J.M.;
RT   "A family of Tc1-like transposons from the genomes of fishes and
RT   frogs: evidence for horizontal transmission.";
RL   Gene 271(2), 203-214 (2001).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of plaice Tc1-like transposon.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 99%. TC1_PP is a Tc1-like
CC   transposon containing a transposase domain. It is part of a
CC   family of Tc1-like transposons occurring in fish and frogs. It
CC   has 78% similarity to the corresponding transposon TC1_RT in
CC   the frog Rana temporaria.
XX
SQ   Sequence 1634 BP; 541 A; 324 C; 364 G; 404 T; 1 other;
     tacagtgcct tgcataagta ttccaccccc tttggacttt tctacatttt gtcatggtat        60
     aaccacagat taaaatttat ttcatcgtga gtttatgtaa tggaccaaca caaaatagtg       120
     catcatttgg aagtgggggg aaatattaca tggatttcac aattatttac aaataaaaat       180
     ctgaaaagtg ttgagtgcat atgtattcac ccccctttac tgtgaaaccc ctaacaaaga       240
     tctggtgcga ccaattgcat tcacaagtca catttgcaag tcacataatt agtaaatagg       300
     gtccacctgt ctgcaattta atctcagtat aaatacacct gttctgtgac ggactcagag       360
     tttgttggag atcattactg aacaaacagc atcatgaaga ccaaggagct caccaaacag       420
     gtcagggata aagttgtgga gaaatatgaa gcagggttag gttataaaaa aatatccaga       480
     gctttgaaca tctctctgag caccataaaa tccatcataa gaaaatggaa agaatatggc       540
     acaaccgcaa acctaccaag aggaggccgt ccacccaaac tgaagagtcg gacaaggaga       600
     aaattaatca gagaagcaac caggaggccc atggttactc tggaggagtt gcagagatcc       660
     acagctgagg tgggagaatc tgtccacagg acaactatta gtcgtctact ccacaaatct       720
     ggcctttatg gaagagtggc aagaagaaag ccattgttga aagggatcca taaaaaatcc       780
     cgtttggagt ttgccagaag ccatgtggga gacacagcaa acatgtggaa gaaggtgctc       840
     tggtcagatg agaccaaaat tgaacttttt ggcctcaatg caaaacgcta tgtgtggcga       900
     aaacccaaca ctgcccatca ccctgagcac accatcccaa cagtgaaaca tggtggtggt       960
     agcatcatgc tgtggggatg cttctcttca gcaggtacag ggaaactggt cagaatagag      1020
     ggaaagatgg atggagccaa atacagggaa atccttgaag aaaatctgat gcagtctgca      1080
     aaagacttga gactggggcg gaggttcatc ttccagcagg acaatgaccc taaacataca      1140
     gccagagcta caaaggaatg gtttggatta aagaatgtta atgtcttaaa atggcccagt      1200
     caaagcccag acctcaatcc aatagagaat ctatggcaag acttgaagat tgcggttcac      1260
     agacggtctc catccaatct gactgagctt catctttttt gccaagaaga atggacaaac      1320
     ctttccatct ctagatgtgc aaagctgggt agagacatac cccaaaagac ttgcagctgt      1380
     aattgcagcg aaagggggtt ctaccaagta ttgacacagg ggggtgaata cttatgcacc      1440
     caacagatgt caactttttt gttctcatta ttgtgttgtg tcacaataaa atktattttg      1500
     cacctccaaa gtactatgca tgttttgttg atcaaacggg aaaaagttta tttaagtcta      1560
     tttgaattcc agttagtaac agtacataat gggaaaaagt ccaagggggg tgaatactta      1620
     tgcaaggcac tgta                                                        1634
//
ID   GGLTR9_LTR  repbase; DNA   ; VRT   ; 358 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-358
RA   Smit A.F.;
RT   "GGLTR9_LTR - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000007 5 bp dups; bp 1-205 75-80% similar to GGLTR4; 13% subst.
XX
SQ   Sequence 358 BP; 79 A; 85 C; 107 G; 87 T; 0 other;
     tgtaggggaa ctgttaggtc acggcttgaa ctggtgattg agcacctggt gaaggggtgt        60
     ggctggccca gggagcacag gcaaattgtt tgcacctgtg ctccccacgt gaccagaagg       120
     ggtggaccca gggtggagcc accctgggct catataaggg ccagccactg aagggagagc       180
     atctcttgga cctaggctgc ttcctgagaa ggagtgctgt atagccagag agccccttca       240
     ccagttgggt gagttcaact cttctttctg tatatgacta ttggcctacc tgtgaatact       300
     ttgcctggta tcgccaagaa cctgtcagaa gcaattttgc ttcttcgtga gcagaaca         358
//
ID   CCREP1      repbase; DNA   ; VRT   ; 250 BP.
XX
AC   M19418;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Carp (C.carpio) repetitive sequence, clone pCchr-3.
XX
KW   Satellite; Simple Repeat; CCREP1; Repetitive sequence.
XX
OS   Cyprinus carpio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Cyprinus.
XX
RN   [1]
RP   1-250
RA   Datta U., Dutta P., Mandal K.R.;
RT   "Cloning and characterization of a highly repetitive fish
RT   nucleotide sequence.";
RL   Gene 62, 331-336 (1988).
XX
DR   GenBank; M19418; Positions       1     250.
XX
SQ   Sequence 250 BP; 70 A; 47 C; 44 G; 89 T; 0 other;
     aagctttagt cttaacgttt gtacaaacta tcattctcta acagagaaag aaggttttca        60
     gcactttgtg ggctttcttt ctgttcattt gcttagttgc actaacagag tgtttctgtt       120
     ctcagaaacg ctaaactgag cgtttttatg cttagaagct caaacatgag ttcatgatca       180
     taaactagta ctcactgaac tgttctgcat tgcatacatt cattgagatg ttagacactt       240
     attgcaagct                                                              250
//
ID   XEN1_LTR    repbase; DNA   ; VRT   ; 282 BP.
XX
AC   AF057166;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Xenopus laevis retrotransposon-like element, partial sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Retrovirus; XEN1_LTR.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RA   Shim S., Lee K.S., Han K.J.;
RT   "A novel retrotransposon-like element in Xenopus laevis with a
RT   ventralizing activity.";
RL   Unpublished.
XX
RN   [2]
RA   Shim S., Lee K.S., Han K.J.;
RT   "XEN1_LTR.";
RL   Direct Submission to Genbank (03-APR-1998)Life Science, Pohang
RL   University of Science and Technology, San 31 Hyoja-Dong, Pohang
RL   790-784, South Korea.
XX
DR   Genbank; AF057166; Positions    3455    3736.
XX
SQ   Sequence 282 BP; 95 A; 42 C; 73 G; 72 T; 0 other;
     gggcaggaga gagggagctg ggcagctgag aggaggcagc tagagagctg gagaagccag        60
     aggagcctgg gacaagacat gtgaggaatg aagaccagag gggaaggcag agataaagcc       120
     gaactctatt cccctgcctt tttggtaaca actatgtaga cttgtgtaat gtgtaactgt       180
     aaatattgta atttttgttt agtctaagtg taatcattta tgtagaacaa tcaattgatt       240
     tattttacaa tacatcactt tactatacgc tcaaaaaaaa aa                          282
//
ID   RBMI_MS     repbase; DNA   ; VRT   ; 2574 BP.
XX
AC   M35143;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   M.serrator retropseudogene-like repetitive element I (RBMI).
XX
KW   MSRBMI; RBMI_MS; Repetitive sequence.
XX
OS   Mergus serrator
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Anseriformes; Anatidae; Mergus.
XX
RN   [1]
RP   1-2574
RA   McHugh P.K., Madsen S.C., de Kloet R.S.;
RT   "A highly repeated retropseudogene-like sequence in DNA of the
RT   redbreasted merganser (Mergus serrator).";
RL   Gene 87, 193-197 (1990).
XX
DR   GenBank; M35143; Positions       1    2574.
XX
SQ   Sequence 2574 BP; 691 A; 600 C; 484 G; 790 T; 9 other;
     gaattcctca aacacgctgc ggctgcttac ctttaataca cccgttgcat gcgatggagc        60
     tgtatttctt gcttttncct gcactggaag gcttcccttc cttgtcaggt tgtttactgc       120
     cctcactctt ctgcattgct cacatgaaga gccatctgga ggatgggttt cttccttctt       180
     ctcccgggtt atcttctgga aacgaggacc taagtattcc aaggagcctt tcactttcct       240
     ggtgtttctc cttttttttc tttttcttct cctttttctt ctttttctta tgcttgtgat       300
     tggcattgtc aaagtggagc gcacagaaac acaaatcgtg aagtctgaaa gaaacatgca       360
     agttaaaaag agaaaaaaag atgtggcact tgttgcctat atgaaacttt atttttttta       420
     ccacaggtga tgatttgcag catgtcagct attttgtggt gctttgtgca cacgcaactt       480
     acttacttta gatgcagcaa acttaagccc tcagattgaa ggaccatagg ctggtttgta       540
     cacagatcat taaccatggt tagctctgga atacgtgcaa gcagaaaaaa acttttaacc       600
     taatccggaa tggtgtacag atgtgattcg aactatgtgg tctaacgcta gtgctctgac       660
     acaattcagc aatagctttc ctatcttcac tgaacaccta cacacagacc cagccagctg       720
     atgctatcta aataacttag aaactaccag aaaaaaaaaa aaaaaaaaaa gaagaaaaaa       780
     cgagaataaa aaaaaaaagt agaaaaaaaa aaaaaaagga agacatgaga agcacccaga       840
     aatgaattag gataaaaaat tcggagtatg ctggaatcct tgcttacttg gaatccttct       900
     ctgcatgttt aatccttaga cttctttttt cttctagaac ttgttgatat ttttgcattt       960
     ttttcaccac ctaaaagctc cttttctatc tttctgtctt tcctttctat ttcactttca      1020
     ctaccttctg cacgggtata ttttcttttt ctgtttcttt ctgtttcatt tttctggcga      1080
     cagttctcca aatgagctga cacgggtgga agcgcatgtc tttcacgaga atgtcttctg      1140
     gaatgttgct gatgtaccga gcaacgatgc aagtctgctc ggggtgtgct aaagcgacgt      1200
     acatcttcct ctctcaagag ggaactgtga ggccatccgc ttttgtaatg ataactctta      1260
     tgtgacctgc tgtagtaagt tgcagtcgat ttgtcaaagg ctgcatcgcc gtgagacaac      1320
     tttctctctc tactgtctcc tgtcgcatga ggtgaatagt aatcattgta atagctacat      1380
     ctttcccatc tccgagcntt catcctcgat agtatctntc tctgctcaac ttctttgccc      1440
     tttggatcgg taatatctat tgctacctcg ttctgatctt cctccgcttg ccagatctgt      1500
     actttgaata tttgacngct cttctgccat tctcagggct gtttctttca nnnnggaaag      1560
     atctgcacct gcttcccccc cagtgctcct gcttgtgacg cttttgctca acaacttcca      1620
     cgctctgaga acacctcctc ttgctggaag gacctgcttt ttgactctcc ttctcttcag      1680
     taggagcatg ttcctcttgc tttggtaatg ctctttgtca gtgtttttag tctcgncttg      1740
     tatcttggca tctctctgta atagctgagg aggaaaggtt tttagagcta cattcagtgt      1800
     cagacttgag agaggaagct tgccgcaatt tctcaccagg ctcagaagac tctttgccgg      1860
     acaaaacgtt ttcttttgaa atgaggtcac gttcttttca tcttcttgct ttctccttat      1920
     ctccaccgtc atcacattgg tactgtgcga ggtattcatc attccagtag attttcgagg      1980
     gtccgcaaca ctgcacaaaa taaaagcaca tttctcagtt ctgctgaagg acgtgaatat      2040
     taagaggaaa accttccaaa agtcgaacaa acaaacaaaa acctccggac tacaggaaca      2100
     ctctccaaga tatgccattt agaaacctct cctgtcatta ggacaccttc ttcagctcca      2160
     cagaaagggg ttttgccctc ttgcttctga agccattgca ctaaaaagca aacgcagtgc      2220
     tgtctccctc cacatgctgc tctgaataag agccagaata ttcaaaacca ctctctttgt      2280
     tctcccacat agccgaaaaa acaccggttg aaacagagtt ttctacctct cgcccaacaa      2340
     tttacattca catagcctat gactgaaaaa ataaaaggcg gggctgagga ggaacagcca      2400
     gtgttggaaa tgaaaagaag cagcccgttc cttcatagtc ttaagcctat gctactagga      2460
     aaacaaaaca aaacaaaaca aaacaagagg agaggagaac aacagcggga aattttcctg      2520
     ttctccaggt gttaaattgc aaagcctcct ctggaggatc acagctgtga attc            2574
//
ID   GAMERA      repbase; DNA   ; VRT   ; 795 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   GAMERA LINE-like element from medaka fish - consensus.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; GAMERA;
KW   LINE-like repetitive sequence.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RA   Koga A.;
RT   "Gamera, a family of LINE-like repetitive sequences widely
RT   distributed in medaka and related fishes.";
RL   Unpublished.
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of medaka fish GAMERA LINE element.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [2] (Consensus)
XX
CC   A LINE-like element found in Oryzias mekongensis, Oryzias
CC   latipes, Oryzias curvinotus, Oryzias luzonensis, Oryzias
CC   javanicus. Average similarity to consensus 95%.
XX
SQ   Sequence 795 BP; 262 A; 166 C; 184 G; 180 T; 3 other;
     caccaacaaa ggaggaaatt gtttcagtta tcaagtcact gaaaagcaat aaagcaccag        60
     gtcatgacaa tttgaatgct gaactgttca agacggacac agagacagca tcaaaaatat       120
     tgcaaccttt yttcaaaacc gtttggaaat cagcaagcat accagaagaa tggactaaag       180
     gtgtaatcat caaaattcca aagaagggca cactcagcga atgtaacaac tggcgcggta       240
     tcacccttct gtccatcccc agcaagatta tggccaagat aatcatcaat aggttatcgg       300
     aagctgtgaa tgcaacactt aggaaggaac aagccggttt tagaaaaggg agaagatgca       360
     cggaacagat ttttgctctg agaaacataa tagaacagag tgctgaatgg cagcagcagc       420
     tcttcgttaa ctttatagac tttgaaaaag catttgacag tgtgcacaga gacagcttgt       480
     ggcgaatctt gagggcttat ggagtaccga cccacatgat aaaactgatw agaagcttct       540
     ataacaacta cagatgctgt gtgggaggaa gtgacatctg gtttgaagtg aaaactggag       600
     tccgtcaagg atgtgtgatg tcagctctcc tcttcaacgt agtgatagac tgggtgatga       660
     ggcgcacgac tgaagcagga ccaactggca tcagatggac actcttctcc accctcgagg       720
     atctcgactt tgctgacgat ctggcactga tctctcatat tcaccgacac atgcaagaca       780
     agactgaccg rttaa                                                        795
//
ID   REX3        repbase; DNA   ; VRT   ; 2223 BP.
XX
AC   AF125983;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   REX3 is a RTE-like non-LTR retrotransposon, a partial sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Interspersed Repeat; REX3;
KW   RTE superfamily.
XX
OS   Xiphophorus maculatus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Cyprinodontiformes; Poeciliidae; Xiphophorus.
XX
RN   [1]
RP   1-2223
RA   Volff N.J., Korting C., Sweeney K., Schartl M.;
RT   "The non-LTR retrotransposon Rex3 from the fish Xiphophorus is
RT   widespread among teleosts.";
RL   Mol. Biol. Evol 16(11), 1427-1438 (1999).
XX
RN   [2]
RP   1-2223
RA   Volff N.J., Koerting C., Sweeney K., Schartl M.;
RT   "REX3.";
RL   Direct Submission to Genbank (05-FEB-1999)Phsiologische Chemie I,
RL   Biozentrum, University of Wuerzburg, Am Hubland, Wuerzburg
RL   D-97074, Germany.
XX
DR   GenBank; AF125983; Positions       1    2223.
XX
SQ   Sequence 2223 BP; 441 A; 516 C; 746 G; 520 T; 0 other;
     caccctaggc cgcagtttga tgatcgactt tgtcatcgtt tcatcgtatc tgcggccgta        60
     tgtcttggac actcgggtga agagaggtgc ggagctgtcc actgaccact acctggtggt       120
     gagttggctt cggtggtggg ggagatggag tctgagtgga ccgtgttccg tgcctccatt       180
     gttgaggcgg ccgattggag ctgtggccgc aaggttgtca gtgcctgtcg cagcggaaac       240
     cctcgaaccc attgatagac atcttcgggt gagggatgcc gtcaggctga agaaggagtc       300
     ctatcgggtc tttttggcct gtgggacccc ggaagcagct gatgggtatc agtgggcgaa       360
     gtggcatgca actcgggtgg ttgctgaggc aaaaactcgg gcgtgggagg agtttggaga       420
     ggccatggag aaagacttcc gtacggcttc gaggcgattc tggtccgcca tccgatgtct       480
     tagggggggg aagcagtatg gcaccaacac tgtttatagt gcggatggtg tgctgctgac       540
     ctctactcag gacattgtgg gccagtgggc agaatacttt gaagacctcc tcaatcccac       600
     caacatgcct tccattgagg aagctgagcc tggggactct gggttgggct ctccaatctc       660
     tggggacgag gtcgccgagg tggttaaaaa gttcctcggt ggcaaggccc cgggggtgga       720
     tgagatccgc ccggagttcc ttaaggctct ggatgttgta gggttgtgtt ggctgacgcg       780
     actctgcaat atcgcatgga catcgatggc agttcccctg gattggcaga ccggggtggt       840
     ggtccccctg ttcaaaaagg gggactggag ggtgtgctcc aattatagag gggtcacact       900
     cttaagcctc cctggcaagg tctattctgg ggtgctggag aggagggtcc gtcggatagt       960
     cgaacctcgg attcaggaag agcagtgtgg tttttgtcct ggtcgtggaa cactggacca      1020
     gctctacacc ctcggcaggg tcctggaggg tgcatgggag ttcgcccaac cagtctacat      1080
     gtgttttgtg gacttggaga aggcgttcga ccgtgtccct cggggagccc tgtggggggt      1140
     tctccgcgag tatggggtac cggggacttt gatacggtct gtcaggtccc tgtatgaccg      1200
     gtgtcagaga ctggtccgca ttgccggcaa taagtcgggc tcatttccgg tgagaattgg      1260
     actccgccag ggctgccctt tgtcaccgat tctgttcatc actttcatgg acagaatttc      1320
     taggcgcagc caaggtgttg aggggatccg atttggtgga ataaggctct catctctgct      1380
     ttttgcagat gatgtgatcc ttttggcttc atcgggtcat gatctacagc tctcgctgga      1440
     gtggttcgca gccgagtgtg aagcggccgg gatgaggatc agggcctcca aatccgaggc      1500
     cacggtcttg agccggaaaa gggtagagtg ccttctccgg gtcagggggg gtgtcctgcc      1560
     ccaagtggag gagttcaagt atctcgggat cttgttcacg aatgggggaa gaagggagtt      1620
     ggagatcgac aagcgaattg gcgcagcatc tgccgtcaag tgggctctgt accagtccgt      1680
     cgtggtgaag agaaagctga gccaaaaagc gaagctctcg atttactggt cgatctacgt      1740
     tcccaccctc atctatggtc atgagctttg ggtcgtgacc gaaagaacga gatcacggat      1800
     acaagcggcc gaaatgggtt ttctccgtag ggtgtctggg ctctccctta gagatagggt      1860
     gagaagctca gtcatccggg agggactcag agtagagccg ctgctccttc acttcgagag      1920
     gagccagttg aggtggctcg ggcatcttgt taggatgtct cctggacgcc tccttgttga      1980
     aatgttccgg gcatgtccca ttggaagaag accccgggaa agacccagga caggctggag      2040
     ggactatgtt tctcgactag cctgggaaca ccttgggatt cccccggaag agctggaaga      2100
     agtggccggg tcgagggaag tctgggcctc ccatctgaag ctgctacccc cgcgacccga      2160
     ccccggataa gcagaagaag atggatggat ggatggatgg atggatggat ggatggatgg      2220
     atg                                                                    2223
//
ID   BBSINE1     repbase; DNA   ; VRT   ; 412 BP.
XX
AC   U05292;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Bufo bufo clone B13.2 repeat region.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; BBSINE1.
XX
OS   Bufo bufo
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae;
OC   Bufo.
XX
RN   [1]
RP   48-313
RA   Scribner T.K.;
RT   "Comparative analysis of intra- and inter-population genetic
RT   diversity in Bufo bufo using allozymes, single locus
RT   microsatellite and minisatellite, and multilocus minisatellite
RT   data.";
RL   Unpublished.
XX
RN   [2]
RP   1-412
RA   Scribner T.K.;
RT   "BBSINE1.";
RL   Direct Submission to Genbank (21-JAN-1994)Kim T. Scribner,
RL   Molecular Ecology Laboratory AWFRC, National Biological Survey,
RL   1011 E. Tudor Road, Anchorage, AK 99503, USA.
XX
DR   GenBank; U05292; Positions       1     412.
XX
CC   SINE-like element.
XX
SQ   Sequence 412 BP; 145 A; 63 C; 77 G; 127 T; 0 other;
     gaagagaatg ccaagagtgt gcaaagcagt aatcaaagca aaaggtggct actttgaaga        60
     acctagaata tgacatattt tcagttgttt cacacttgtt tgttatgtat ataattccac       120
     atgtgttaat tcatagtttt gatgccttca tagtcatgaa aagaaagaaa actctttgaa       180
     tgagaaggtg tgtccaaact tttggtctgt actgtatata cacacacaca cacacacaca       240
     cacaggtgaa actcgaaaaa tttttatatt gtgcaaagtt aatttatttc agtaatgcaa       300
     cttaaaagat gagactaata tatgagatag actcattaca tgcaaagtga gatattcaag       360
     cttgttatat tggatgatta tgacttacag ggggatcctc tagagtcgac ct               412
//
ID   BRIDGE2_FR  repbase; DNA   ; VRT   ; 1573 BP.
XX
AC   .
XX
DT   08-FEB-2002 (Rel. 7.01, Created)
DT   08-FEB-2002 (Rel. 7.01, Last updated, Version 2)
XX
DE   non-LTR retrotransposon; Penelope/BRIDGE superfamily; Xena;
DE   Poseidon; Neptune; BRIDGE2_FR.
XX
KW   Penelope; Non-LTR Retrotransposon; Interspersed Repeat;
KW   BRIDGE2_FR; Neptune; Penelope/BRIDGE superfamily; Poseidon; Xena.
XX
OS   Takifugu rubripes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Tetraodontiformes;
OC   Tetradontoidea; Tetraodontidae; Takifugu.
XX
RN   [1]
RP   116-502
RA   Kapitonov V.V., Jurka J.;
RT   ";..";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
RN   [2]
RA   Volff N.J., Hornung U., Schartl M.;
RT   "Fish retroposons related to the Penelope element of Drosophila
RT   virilis define a new group of retrotransposable elements..";
RL   Mol. Genet. Genomics 265(4), 711-720 (2001).
XX
RN   [3]
RA   Dalle Nogare E.D., Clark S.M., Elgar G., Frame G.I.,
RA   Poulter T.R.;
RT   "Xena, a basal LTR-retrotransposon from the tetraodontoid fish
RT   lineage..";
RL   GenBank entry AF355377..
XX
RN   [4]
RA   Smit A.F.;
RT   "Initial survey of interspersed repeats in Takifugu rubripes..";
RL   Repbase Reports 2(1), 3-3 (2002).
XX
CC   [4] (Consensus)
XX
CC   This is a 5' truncated consensus sequence for a retrotransposon
CC   of the basal Penelope group. At the DNA level, it is 80-82%
CC   similar over almost its full length to BRIDGE1_TN (BRIDGE1_TN was
CC   rediscovered as 'Neptune' by [2]).
CC   A fragment of the old BRIDGE2_FR entry [1] is in here (pos
CC   116-502 corresponds to bp 1-387 of old entry). The remainder of
CC   the old BRIDGE2_FR (positions 503-618) is an unrelated repeat.
CC   On average, copies are 8% diverged from the consensus, but some
CC   copies are obviously very young (<1% diverged from each other).
XX
SQ   Sequence 1573 BP; 507 A; 444 C; 338 G; 275 T; 9 other;
     actcaaacta cgtccagaag agacatggta tcttacgatg tcacgtcact cttcacgtgc        60
     atccctaccg ccagcgcnat agacaccatc cacaagcacc ttctattgga caagaatctt       120
     ccagaaagaa caaccttaac accggcccaa atctgcacca tgctggacct gtgtttgaac       180
     accacctatt tccagtacag agaaggcttc tacaggcaga aacatggctg tgccatgggc       240
     tcaccagtat cccccatagt tgccaatcta tacatggaga aggtggaanc ccaggccctg       300
     acatccttca caggaactgc nccaagccac tggttcagat atgtggatga cacctgggtc       360
     aaaattcgaa cacaagaatt ggaagcgttc tcaaatcacc tcaacaaaac agacgagcat       420
     gtaaaattca cccgggaaga tgtaaaagga aacagtctgg cctttctgga ctgcgcagtc       480
     aagatcactg aggacagaaa cctcaccatc gaagtctaca gaaaacctac acataccgac       540
     cagtacctcc agtttgactc tcaccaccca ctggaacaca agttgggagt gatcagaacc       600
     ctccaacacc gggccagaga aatacccacc acatcccaag gcaggaagaa ggaacaggac       660
     cacattaaga cagctctcaa aacatgtggc tacccagact gggccttcac caagacctca       720
     agaaagcgag accccagcaa aggagaggag gagagaaaca aacgccgcag cgtttccatc       780
     ccctacctgt ccggagtctc tgagaagttt aggaggatcc tccagaaaca cgacataccg       840
     gttcagttca aacccagcaa cactctcaga cagaggctgg tacacccgaa ggacaagaca       900
     ccaagacnca aacaaagtaa tgttgtttat gctgtacagt gccaggagga atgcaaggaa       960
     ctgtacattg gggaaaccaa acaacctctc cacagaagaa tggcacaaca cagacgtgcc      1020
     acctcttcgg gtcaggactc agcagtccac ttacacctaa aggagagcgg gcactccttc      1080
     gaggacagcc aagtacgggt actggccaga gaagaccgct ggtttgagag gggtgtcaag      1140
     gaagctatcc atgtcaaatt ggaaaaacca tccttaaaca gaggtggtgg nctgaggcac      1200
     ttcctatcac ccacatacaa tgcagtcctc cactccttcc aacagcaaac caaacgttca      1260
     caccattcca ggagacccgg tgactcacca ccatgtganc cagcagacaa aggggagaca      1320
     cctcaacnga aactaggtga acgacccgac caacgaccct gccaacgact ctcaggtgac      1380
     cacccagatc attagcatgc naatggtcca caggggctat atattttcaa gctctctccc      1440
     cagcganttc agaactgaag aagccttctg gatagaaggc gaaacgtctt caaagagaag      1500
     aaacccagtc cagttgacag agaaaactac cttggataac aatgacctgg atgattgaga      1560
     atctacacag aca                                                         1573
//
ID   MSAT_MG     repbase; DNA   ; VRT   ; 189 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Meleagris gallopavo microsatellite.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT_MG; microsatellite;
KW   tandem repeat.
XX
OS   Meleagris gallopavo
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Meleagris.
XX
RN   [1]
RA   Smith J.E., Nahason S., Shi L., Drummond P., Zahorchak R.,
RA   Foster C.J.;
RT   "Genomic DNA sequence from a DNA library enriched from turkey
RT   microsatellites.";
RL   Unpublished.
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of M. gallopavo microsatellite.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 99%.
XX
SQ   Sequence 189 BP; 38 A; 45 C; 48 G; 58 T; 0 other;
     acatagactc cctgctatag gcagagatac atccctttag accaggttgc tcaaagacct        60
     atccagcctg gtcttgaacg cttccagaaa ggggcattca caacctcacc gagcatcctg       120
     ttgctgtgtc tcactaccct catagtattg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg       180
     tgtgtgtgt                                                               189
//
ID   ONREP       repbase; DNA   ; VRT   ; 400 BP.
XX
AC   L01043;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   unspecified repeat region.
XX
KW   Satellite; Simple Repeat; ONREP.
XX
OS   Oreochromis niloticus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Labroidei; Cichlidae; Oreochromis.
XX
RN   [1]
RP   1-400
RA   Harris S.A., Wright M.J.;
RT   "Minisatellite loci in tilapia.";
RL   Unpublished (1992).
XX
DR   GenBank; L01043; Positions     166     565.
XX
SQ   Sequence 400 BP; 96 A; 63 C; 153 G; 88 T; 0 other;
     cagattcttt cacagcaggc actgggacag gtgacttggt gacagtggag gttgggacag        60
     gagacacttt gacatctgat ttttcaggag ttgaagtcac atcaggggac acaggtgcag       120
     gtgacttggt ggcagtggag gtcgggacag tggaggtcgg gacagtggag gtcgggacag       180
     gagacacttt gacatctgat tttgcaggag ttgaagtcac gtcagggaca caggtgcagg       240
     tgacttggtg acagtggagg ttgggacagt ggaggtcggg acaggagaca ctttgacatc       300
     tgattttgca ggagttgaag tcacatcaag ggacacaggt gcaggtgact tgtgacagtg       360
     gaggttgggc agtgagtcgg acagtggagg ttgggacagt                             400
//
ID   CASAT2      repbase; DNA   ; VRT   ; 133 BP.
XX
AC   Z35439;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Satellite DNA; repeat region.
XX
KW   SAT; Satellite; Simple Repeat; CASAT2; satellite DNA.
XX
OS   Coragyps atratus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Ciconiiformes; Cathartidae;
OC   Coragyps.
XX
RN   [1]
RP   1-133
RA   Keyser K.C., Montagnon M.D.;
RT   "Satellite DNA of Coragyps atratus.";
RL   Unpublished.
XX
RN   [2]
RP   1-133
RA   Keyser K.C.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (21-JUL-1994). Keyser
RL   C.K., Institut de medicine legale, 11, rue Humann, Strasbourg,.
XX
DR   GenBank; Z35439; Positions       1     133.
XX
SQ   Sequence 133 BP; 28 A; 33 C; 38 G; 34 T; 0 other;
     ggcctacaaa agcgcttcca aggaagggtg ctggctagca acagctttca gtgctggccc        60
     ttttcatgtc ggagaaattc ctggacgttt gcaatttctc agctcgcgtt ttcgcaacgg       120
     agaggtagtg gcc                                                          133
//
ID   XFB_XL      repbase; DNA   ; VRT   ; 462 BP.
XX
AC   X71081;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Interspersed repeat; nonautonomous DNA transposon.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous;
KW   nonautonomous DNA transposon; T2-group; TIRs; XFB_XL.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-462
RA   Unsal K., Morgan T.G.;
RT   "A novel group of families of short interspersed repetitive
RT   elements (SINEs) in Xenopus: evidence of a specific target site
RT   for DNA-mediated transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248, 812-823 (1995).
XX
DR   GenBank; X71081; Positions    2595    2134.
XX
CC   Nonautonomous DNA transposon; 131 bp TIRs (TTAAAGGRR...); belongs
CC   to
CC   the T2-group [1]. TTAA target site.
XX
SQ   Sequence 462 BP; 152 A; 84 C; 82 G; 144 T; 0 other;
     ttaaaggaat tgttcagtat aaaaataaaa actgggtaaa actgcaaaat aaaaaaaaat        60
     tctaatatag ttagccaaaa atgtaatttt ataaaggctg gagtgactgg atgtctaaca       120
     taatagccag aacactactt cctgctttgc agctctcttg gtttccactg attggttaca       180
     aggcagtaac caatcactga cttgataggg ggccacatgg gtcataactg ttgcttttga       240
     atctgagctg aatatcaatt acaaactcac tgaacagtta tgtcccatgt ggcccccctt       300
     aaagttactg actaactcag agttagagag cgtcaaagca ggaagtagtg ttctgttcga       360
     catccagtca ctgcagcctt tataaaatta catttttggc taactatatt agaaatattt       420
     tttatttgca cagtctattt ttaaactgaa ctgctccttt ga                          462
//
ID   Hitchcock_LTR repbase; DNA   ; VRT   ; 543 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 2)
XX
DE   Gallus gallus Hitchcock_LTR, putative LTR.
XX
KW   LTR Retrotransposon; Interspersed Repeat; GGLTR5B; Hitchcock_LTR;
KW   putative LTR; retrotransposon.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-543
RA   Smit A.F.;
RT   "GGLTR5B retrotransposon LTR.";
RL   Direct Submission to Repbase Update (SEP-2004).
XX
RN   [2]
RP   1-543
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [2] (Consensus)
XX
CC   No internal component of this putative retrotransposon has been
CC   identified. Wicker et. al. classify it as an LTR due to the
CC   conserved termini TG/CA, and absence of SINE characteristics.
XX
SQ   Sequence 543 BP; 133 A; 104 C; 134 G; 169 T; 3 other;
     tgtcttagtt tcagctggga tggaattgtt ttcttcagag tgtctggtat gatgctatgt        60
     tttggttcta ggagaaaaaa caatgttgat aacacaccya tgtttatagt tgctgctaag       120
     cagtgttgta cagagccaag gccattctca gcgaagggcc caaggagctg ggagggaaca       180
     gaattaggac agctgactta aactggccaa agggatattc cataccatat gacatcatgt       240
     ggaaggagtt ttgaaggggg tgggagttca tctcgctctc ttccgctgct tygggggcta       300
     gctgggcatc ggtcyggggg tggtgagcaa ttgcttgtgc atcacttgtt atatacattt       360
     atatatatat atagtcataa ctattatcct tttccttttc tctatcttag taaatagttt       420
     tatctcaacc catgagttct actttttttt tttaattctc tcccccatcc cactgggaag       480
     ggggggagtg agcgaacaac tgtgtggtgc tcagccacct gctgggttaa accacaacag       540
     aca                                                                     543
//
ID   Charlie12_GGa repbase; DNA   ; VRT   ; 890 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   hAT DNA transposon from chicken.
XX
KW   hAT; DNA transposon; Interspersed Repeat; Charlie-Galluhop;
KW   Charlie12_GGa.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-890
RA   Smit A.F.;
RT   "Charlie12_GGa - hAT DNA transposon from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   Nonautonomous deletionproduct of Chap1_GG, with a ~1700 bp
CC   deletion at pos 233. About 80% identical at DNA level to
CC   Charlie12 in human genome. 16% subst level.
XX
SQ   Sequence 890 BP; 252 A; 221 C; 177 G; 231 T; 9 other;
     cgcccgggca tgtccagcct gcggcccaca agccacatgc agcccagccc accactgcgn        60
     gctgccccct gctctgttat cgcggctgtg gntcttccca tctcagcggg ccagcccagc       120
     cccgggcgcg cacccatcgc tcagcaacaa ccaaacaccg gtgtgcgatc ggcgctgtct       180
     gggctgaaac cagggcatgg ggagggcgca gtgcagtgcc gactcaagtg atggcaaata       240
     agtgtatgca ttttgataca ctggctaaac acagtcctgt gaacagcgaa aaaaaacgtg       300
     cagctgtgct ttccgttttg ataaaggaat ttgagaacag gtttnaagat tgccgaaaaa       360
     atcatcaatt tgtttatgtt tgcgactcca ttttcagttg acataaatac attacctgca       420
     aattttcaaa tggaatgtat agagttgcaa tcaaaaattt gatcgtgtct ctttaccaga       480
     ctttnataag ncctctctta ccagagaaat atccctcact tcacaaccac gccttantca       540
     tgtcatcgct ttttggcagt acgaacattt gtgaacaact gttttcaagg atgaagcaca       600
     ggaagagtaa aatttcatca aaaatctctg acgaacacct tgagaactca ctaagaattg       660
     cagccactgc catcgaacca gactgatgca ttagtttcac anaaacaggg tcaaatagcc       720
     cccatgattt tatgcttntg tcgccctctt ttttaaatgt ntttaatatt aaaaaaaagt       780
     aagttttgtt acttatatac attaactata ttatatattt tatatgcggc ccaagacaat       840
     tcctctccac tcagtgcggc ccaggcaagc caaaaggttg gacacccatg                  890
//
ID   ASAT_CY     repbase; DNA   ; VRT   ; 262 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Alu satellite sequence from Cyprinids - consensus.
XX
KW   SAT; Satellite; Simple Repeat; ASAT_CY; Alu satellite repeat.
XX
OS   Cyprinidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes.
XX
RN   [1]
RA   Venugopal T., Pandian J.T.;
RT   "A conserved Cyprinid Alu Satellite isolated from Labeo rohita,
RT   clone RALU #16.";
RL   Unpublished.
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of Cyprinid alu satellite sequence.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 82%.
XX
SQ   Sequence 262 BP; 90 A; 33 C; 32 G; 107 T; 0 other;
     aaatattatt acaatttaaa ataactgttt tctattttaa tatattttaa aatgtaattt        60
     attcctgtga tgcaaagctg aattttcagc atcattactc cagtcttcag tgtcacatga       120
     tccttcagaa atcattctaa tatgctgatt tggtgctcaa gaaacattta ttattattat       180
     caatgttgaa aacagttgtg ctgctaatat ttttttattt ttgatgaata gaaagttcaa       240
     aagaacagca tttatttgaa at                                                262
//
ID   Soprano_I   repbase; DNA   ; VRT   ; 2840 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 3)
XX
DE   Gallus gallus Soprano retrotransposon, internal domain.
XX
KW   LTR Retrotransposon; Interspersed Repeat; ENS1; LTR; Soprano_I;
KW   gag domain; retrotransposon.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-2840
RA   Smit A.F.;
RT   "ENS1 derived retrotransposon, internal sequence.";
RL   Direct Submission to Repbase Update (SEP-2004).
XX
RN   [2]
RP   1-2840
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [1] (Consensus)
XX
CC   cENS is a gene expressed in embryonic stem cells.
XX
FH   Key           Location/Qualifiers
FT   CDS           919..2376
FT                 /product="Soprano_I_1p"
FT                 /translation="MASMKSEDVLFDLLEKHGARPSVSGVDWARQNWYNLQ
FT                 SVSDRIRVLQNEARTRAGKGKSFICAVLGAALKAAVEFREEKNSTETQTIQ
FT                 ALQESVKVTQELVKSLRSQITSLEDQLEREKHNSVLLQTAFKELITCKDTG
FT                 DTVAHSAPQEKVYPQGKLQEVKERLDKLEASPAHIRPLIKTEYTFDNSEDL
FT                 DPQMNVKEIPFSATELAKLKKDFSRSPKESETEYVWRVSLTGGDQILLTEK
FT                 EAEGYWGPGVFLTTGNNRAPWSLTQRAAYWAGGLNPLERGDPLAITGTIDQ
FT                 LVENVQKAACLQMMYDRKLQPHHESPMMLPVNPERLTPLIRGLPESLKPIG
FT                 IQLQGKIQAMSQGERTWAALEGSVAPNHQSGPKVWTWGEVAQELINYGRKY
FT                 GPVVSTSSKFEPRGVRLAVASLASRPPSPKLIGTKKVSSPVKTGTRCIDHK
FT                 RNGLWTLGWRKGIPRDLMNGLPTVRLEKLVNCWPEQKLKGS"
XX
SQ   Sequence 2840 BP; 768 A; 563 C; 676 G; 831 T; 2 other;
     ttttttatgg cgtagtcgaa gcaggatacc cgccgtgaga gtgttgtcct tccagataat        60
     agtctgaaac tttctgcgtg tacctcctgg agttgcaaga agcgatactt tttgataact       120
     tagacgtgag cacctctcca ggaagatcgc ttcatactct gaaactttac tatttatgtg       180
     tgtacctctc gaggatgtat gaattttgtc taattgcatt tatttaatac gtgtgtgcct       240
     cctcgggaag atctctctgc attttgtggt ttaaggaacc cctctacgtg tgcgcctctt       300
     ggggaagtaa gatacacgtt ttttgactta aaaaacgtgt gcgcctctcc aagaagttta       360
     ctcactttgc tgaaaattgt ttatgtatgc acctctcgag gacgtatgaa tcttgtctaa       420
     ttgcatttaa tacgtgtgtg cctcctcggg aagacctctc tgcattttgt gacttaagga       480
     tcttgcaact taagtgtgaa atttgaacct ctttcgtgcg tgcctcttgg agaagtgagg       540
     aagtgataca cgttttttga cttaaaaaac gtgtgcgcct ctccaagaag tttattcact       600
     ttgttgaanc ctagaaagtg ttgttttagc ttaaaattaa ctgcgggttt tgaaaccgaa       660
     gtgtgccttg ctttggtgtg gtgtttgcag ttttttgtgt ggcttcgcag ggaagttagg       720
     agcgatttta agttggttta gcctctttgt ccttgtgctt tcctcaacaa agggaggcgc       780
     gatcggaaca tttacatttc tttaggtgtg gtgtgcctcc gtgggagagg cgataaggag       840
     ttatttgtac ttttgaatag gagtacctcc tcctctctca gtgtatatct ttctgcgtat       900
     ttagaaatga gcaacagtat ggccagtatg aaaagtgaag atgtattatt tgatctttta       960
     gaaaagcatg gtgctcggcc ttctgtatca ggggtggatt gggcacgaca gaactggtat      1020
     aatttgcaaa gtgtttcaga ccgtattcgt gttttacaaa atgaggctcg tactcgggcc      1080
     ggaaaaggga aatcttttat ttgtgcagta ctcggtgctg ctttaaaagc agctgtggag      1140
     ttccgagagg aaaagaactc tacggaaacc cagactattc aagcattaca ggaatcggtt      1200
     aaagtgacgc aagaattggt aaaatctctg cgaagccaaa taacgagtct tgaggatcaa      1260
     ttagaaagag aaaaacataa ttcggttctg ttgcaaacag cttttaagga gctgataacg      1320
     tgtaaggaca ccggtgacac tgttgcccac agtgcacctc aagaaaaagt ttatcctcaa      1380
     gggaaattac aagaggtgaa ggaaaggcta gataaattag aggcctctcc agcccacatt      1440
     cgtcctttga taaaaactga atatactttc gataacagtg aggatctaga tcctcaaatg      1500
     aatgttaagg aaattccctt ttcggccact gaactggcca aactgaaaaa ggatttcagc      1560
     cgctccccaa aggagtctga aacagagtac gtctggagag ttagtctcac tggcggagac      1620
     cagatcctac taacagagaa agaagctgaa ggttattggg gaccaggagt atttttaacc      1680
     actggcaata atcgtgctcc ctggtcctta acacagaggg ctgcctattg ggcagggggt      1740
     ctcaaccctt tagaaagggg ggaccctctt gctattaccg gaactatcga ccagttagtg      1800
     gagaatgttc agaaagctgc ttgtctccaa atgatgtatg atagaaagtt gcagccacat      1860
     catgaatcac ccatgatgtt acctgttaat ccggagagac tgacacctct aattagggga      1920
     cttcctgaat cgttaaaacc tataggtata caactccaag gaaagataca agccatgtct      1980
     cagggagaga gaacctgggc agcgttggag ggatctgtag cccctaacca ccagtcagga      2040
     cccaaagtgt ggacttgggg agaggttgcc caagaattaa ttaactatgg aagaaaatat      2100
     gggccggtgg tttctacctc cagtaaattt gagccaagag gagtaaggct tgcagtagcc      2160
     agccttgcct ccaggccacc tagcccaaaa cttattggaa ccaaaaaggt ttcatcccca      2220
     gtaaaaacgg ggacacgatg cattgatcat aaacgcaatg gactttggac tctgggctgg      2280
     agaaagggta ttccacgaga tttgatgaat ggattaccca cagtcagatt agagaaatta      2340
     gttaactgct ggccagaaca aaagctcaag gggagctgat gccttcgccc cccccctccc      2400
     aggtgagcgg gaggtgggtg ggggggtgaa gggtggatgt ttattaggaa gctcacgact      2460
     aaaggaaaca atttgttaat tacttgttta tttattatta gtggttattg tcaaatgtac      2520
     ggttgtctct tttctctctt ctattcatta tgtaatattc atgttaccac tcctgaagaa      2580
     tcacggggtg gtgtctgtgg caagttgcat tgtgtactgt tgcaactctt atgtttgtac      2640
     cttgtatgat tccatgtttt atacaagatg ttgtatcccc tatttacttt gtaaccaaac      2700
     ctgaaaaatg tttgtaatga ttgtatgaaa catttgattc cacaacncct ccctccttta      2760
     cccttgtgct tgctatcttc ttctcaccac catggatgcc cagtgtccca tttttaagca      2820
     acctttgagt cacggggtgg                                                  2840
//
ID   GGLTR10D_I  repbase; DNA   ; VRT   ; 2684 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Internal portion of ERV2 Endogenous Retrovirus from chicken.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-2684
RA   Smit A.F.;
RT   "GGLTR10D_I - ERV2 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Internal sequence of GGERVK10;  derived non-autonomous element.
CC   GG000586, GG0000067, GG000612, GG000135, GG000068.
XX
SQ   Sequence 2684 BP; 638 A; 602 C; 855 G; 580 T; 9 other;
     agtggtgacc ccgacgtgat gcttagggga acgagtcggc tgtctgcttg acggggcagg        60
     agcccaccgc ggggcgttag cacttgctgg gcggtggaag cccggggacg agcccgggga       120
     cagagggaat ctgcagtcac ccctctgtcg gcggaggtcg cggacgagcg acggatatag       180
     cctccggaat cacgccggag aagagcctgg gatcctggtc tcaattggga ggaggatcgg       240
     aggcgacatg gaaaccgtca taaaggtgat cgctcacgcg tgtaagacct atcacgggaa       300
     gcatgctcct tctcggaagg agatagctgc ggtcctctcg ctgctaaatg aganggaggg       360
     gctgttgaca tcgccccgcg atatttgtga ctncaataat tgggattcga ttaccgctgc       420
     cttatgccag cgcgcaatgg ccactcagaa aacagcggag ctnaaaacnt ggggnctgat       480
     actgggggcg ttgaaagcgg ccagagttga gggaaaggta ttggcggagg ctcgatacct       540
     tttgggtctc ggcggaggag gcgagacacn ggacccggtc gggtccgatg ggggctcggg       600
     agcagtttct tgcaggggcc gagaggagac ggagccgcca atgaccgttg gcgagatggc       660
     gccggctgag ccgaccgcgc tcagttcaaa agaagacaaa caacaagaga gtgaangttc       720
     gttgtctcgt ccccctcccc cgtatccgaa cccctcaggc ggaacgttgt atcctttatc       780
     agaattacgt cagtgttacc tgactcaagg gggcggagga agctgtgatc tacatgggca       840
     ggatcaactt agtgcccaca tggggaggga ccagacaaaa ggtccgtcca atgcggacag       900
     ggggcatagc ctaccgtctc tggtcactcc caggggcggt agtgcgagtg atagtgtaga       960
     ggagaaagaa gggactggct ttgagtgcag ggggagggat caaatgacgg actggaatgg      1020
     gattagatcg gaggctttgg ggaagggtat agttccagag gcattccggg tgattgtgag      1080
     tgatcgtggt cccgaatggg tgccgcctga ccccgggggt gttacgcgcc tggtggaatt      1140
     tatggataaa agaggcctga aatcgcctct gacattaaat gcactacaaa ctttggctgc      1200
     actggggcct ctcctccccc gtgacatcac aaacttaatg cgtatggtgc tcaggctggt      1260
     tcagtatacg ttatgggaga cggactggat ggccgagttg gggggccgtg ccggggcggc      1320
     aggggtcggc ccgcgccgct ccctgcatgg gaccggcatc cagcggcttt cagggaaggc      1380
     cgtgggagtg gcttcgcccc agggccagct agcgagacta aggccagggg agctaatagc      1440
     agccacagat gcaatggtgg aagcgtttaa taaacttgtg cataaggccg aaccacctgc      1500
     tccgtgcaca gatattaccc agggcccgaa tgaatccttt caaagctttg cagacaggct      1560
     tttagctgct gcagaggggt ctgatctcct ggaaccggcc caagggccag tgatcattga      1620
     ctgcctgcag cagaaatcgc atgacaatgt taaggcattg ctgcgagccg gcccaagtac      1680
     gcttaatacc ccgggagaag ttattcagta tgtcttagat aagctcaagg tggctcattt      1740
     aactaatgaa gggctagcca cagctattgt cgtagctgtt ggcccgcgac agcaaagatc      1800
     gctgcagcag caagggctgt gtttccgatg cggccagtat ggccacgtta gagcacagtg      1860
     cccctgtggg ggaggccagt cagggcctcc tgatcgcagg aagggcttgc taaagggtat      1920
     ccgtcgtcgg gtatgcggca gttaaacatc atgaatctgg gaaaattctg tgggtaccat      1980
     cgcgaaaagt aataccagat ataagtaaca tatctgcaaa aactgagtct aggtgcgagt      2040
     tttctacaga aattcttcgt tggcaaaccg aagccaactc cagaacaact gagggacaga      2100
     cgatgggatc aagaaccact catcaagagg agcactacac ctgcaacgct gacacttccg      2160
     atgttgctga tgtttatggt gtccctggcg attacagcgt gtcgcaaaca actacaatgg      2220
     acgcaagaac atatgcagaa gattaaagaa gagcgtgatc cctttgggag ctggctggac      2280
     ggactgtttg ggggaacggg ttcatggtta aagcaattgc ttaaggctct cgcagtaggg      2340
     tttgcaatct ttgtgtgtat tctaatctgt cttccacgct ttgtaggatg cttgcagaac      2400
     tgccttcaac gaatgatgga naagactttt gactatcana ttgagtatca tagactgcgt      2460
     gaaaagttgt agaggggttt aggttgttgc gttcgtgctg taacggggca aggcttggcc      2520
     gagcacggga aaggattccc tgttgctctg atgattgctt aagaattgta gaaagtagta      2580
     ggaatagtgt gctgaaatat atttaggatt aggcgttttg cgctgcttcg cgatgtacgg      2640
     gttaggcgtg tgtgtaagta gtatttagct tagggagggg gaga                       2684
//
ID   Mariner1b_GG repbase; DNA   ; VRT   ; 566 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner DNA transposon from chicken.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Charlie-Galluhop;
KW   Mariner1b_GG.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-566
RA   Smit A.F.;
RT   "Mariner1b_GG - Mariner DNA transposon from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   33 bp TIR, TA dups, 14-15% subst level, surprisingly common
CC   (expect ~ 20,000 in genome). Deletion product of Mariner1_GG
CC   (misses bp 370-1134). update20040306.
XX
SQ   Sequence 566 BP; 140 A; 111 C; 163 G; 152 T; 0 other;
     cgagggctgc tccgaaagta atgcctccta ttttattatg ttggcccacg acgtcagagg        60
     cggatgttgg tggtatggca gtagaggttg aaccttccca ccaatattcc gttacatttt       120
     gttgccgtgt gacagatggc agcagagggg cagtctgaca gaatggcgtc tgacatggaa       180
     gtgcgtatga agcaaaggtg tgtcactgaa ttcctccatg cggaaaaaat ggcacccact       240
     gacattcatt gacgcttgct gaacgtttat ggagaccaaa cagtggatgt gagcacagtg       300
     aggcggtggg tggtgcgttt cagcagtggc gacagcgacg tgaaagacaa gccacgttcc       360
     ggacggccat gcagattttt acgagcgcgg catgcaggct cttgttcatc gctggcgaaa       420
     atgcatagct aatggtggtg actatgttga aaaatagtgt tttgtagctg agaatttgct       480
     ctatcaaata gtgttattgt gctctttgta tctgttgtag tttccatgga aataaatagg       540
     aggcattact ttcggagcga cctacg                                            566
//
ID   Galluhop    repbase; DNA   ; VRT   ; 1298 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   28-JUL-2005 (Rel. 9.08, Last updated, Version 3)
XX
DE   Galluhop Mariner-like DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Galluhop;
KW   Mariner1_GG; class 2; transposon.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-1298
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [1] (Consensus)
XX
CC   Putative autonomous mother element for Galluhop. There are an
CC   estimated 13,729 autonomous/nonautonomous Galluhop elements in
CC   the Chicken genome. 92% similar to Mariner1_GG.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..1187
FT                 /product="Galluhop_1p"
FT                 /note="transposase"
FT                 /translation="MVSDMEVCMKQRCGTEFLHVEKMAPTDIHQYLLNIYG
FT                 DQTVDVSTVRQWVVHFSSGDSNVKDKPRSGWPCTAVTPQNEECLDQLIHAN
FT                 QQIMTRELCIELNALEMMVATLEYHKVCARWVPQMLTQEQKEQHMQVCQDL
FT                 LNQYEAEGDSFLDHIITGDETWCHHYELESKQQSMEWQHVNSPLKKMFKIQ
FT                 PLMGKVMCTVFWDRKXVILLDLRNMTSDYYITTLTKLKAQTSRVRPEKKTT
FT                 FLLQHNNTRPHTSLKTMEHTANLGWTVLPHPPYSLDLAPSDFHLFRPMKDG
FT                 LHGQHFPSNNAIIAAVKQWVTSAGADFYEASMQALIHCLQKCVANGGDYVE
FT                 K"
XX
SQ   Sequence 1298 BP; 380 A; 265 C; 314 G; 337 T; 2 other;
     cgagggctgc tccaaaagta atgccttatt ttatatgttg gcccacgtgt cagagggatg        60
     ttagtggtat ggcagtagag gttgaacctt cccaccaata ttcyattcat tttgttgccg       120
     tgtgacagat ggcagcagag gggcagtctg acaaaatggt gtctgacatg gaagtgtgta       180
     tgaagcaaag gtgtggaact gaattcctcc atgtggaaaa aatggcaccc actgacattc       240
     atcaatactt gctgaacatt tatggagacc aaacagtgga tgtgagcaca gtgaggcagt       300
     gggtggtgca tttcagcagt ggtgacagca atgtgaaaga caagccacgt tccggatggc       360
     catgcacagc tgtcacacca caaaatgaag agtgtcttga tcagctcatc catgcaaatc       420
     agcagattat gaccagggaa ctgtgtatag agctgaatgc attggaaatg atggtggcaa       480
     cattggaata tcacaaagtt tgtgctaggt gggtcccaca aatgctcaca caggaacaga       540
     aagaacaaca tatgcaagtt tgtcaggacc tattgaacca atatgaggct gaaggtgaca       600
     gtttcctaga tcacatcatt accggtgatg agacgtggtg tcaccactat gagctggagt       660
     caaaacagca gtccatggag tggcaacatg tgaattcccc actaaagaaa atgttcaaga       720
     tacagccctt aatgggtaaa gtgatgtgca ctgtcttttg ggataggaaa rgggtgatcc       780
     ttctggattt acgaaacatg acttctgact actacattac aacactgact aagctgaagg       840
     ctcaaacttc cagagtcagg ccagagaaga agacaacctt tctcttgcaa cataataaca       900
     ccaggcccca taccagtttg aagaccatgg agcacactgc caatcttggc tggactgtcc       960
     taccacaccc accatatagt ctggatttgg ccccttctga cttccatctg tttaggccaa      1020
     tgaaagatgg actgcatggg caacattttc ctagcaacaa tgccatcata gcagctgtga      1080
     aacagtgggt cacctccgct ggtgcagatt tttatgaggc aagcatgcag gctcttattc      1140
     attgcctgca aaaatgtgta gctaatggtg gtgactatgt tgaaaagtag tgttttgtag      1200
     ctgagaattt gctctatcaa atagtgttat tgtgctcttt gtatctgttg tagtttctat      1260
     ggaaataaat aggaggcatt actttcagag caccctat                              1298
//
ID   GGXHOI      repbase; DNA   ; VRT   ; 717 BP.
XX
AC   X06548; M24754; M24755; M24756;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Chicken W chromosome-specific repetitive DNA (XhoI family).
XX
KW   Satellite; Simple Repeat; GGXHOI; Repetitive sequence;
KW   XhoI family.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-717
RA   Kodama H., Saitoh H., Tone M., Kuhara S., Sakaki Y., Mizuno S.;
RT   "Nucleotide sequences and unusual electrophoretic behavior of the
RT   W chromosome-specific repeating DNA units of the domestic fowl,
RT   Gallus gallus domesticus.";
RL   Chromosoma 96(1), 18-25 (1987).
XX
DR   GenBank; X06548; Positions       1     717.
XX
SQ   Sequence 717 BP; 225 A; 230 C; 70 G; 192 T; 0 other;
     ctcgagaaat accacttttc tctcgaaaat catgcatttt catccaaaaa taccacctgt        60
     ctcccaaaaa ttctgcactt ccttcccgaa aataccactt ttcgctggga aataacacat       120
     ttctacccca aatataacac gcttcactca caaagcacgc attttcaccc cgaaagtacc       180
     acctttcagc cgaaaattac gctttttcct ccagaaaata ccacttctca aacagaaata       240
     tcacgtttcg ccaagaaaat agcaccattc accccaaaat cacgcgtttt ctctccagaa       300
     ctaccacttt tctcacggaa atcacacatt ttcttcccga aagtaccacc ttgcacacga       360
     aaatcacgca ttttctgcgc gaaacaaccc catttcaccc caaaatcagt ctttttcttc       420
     cggaaaatac aacttttcta acgaaatcca tgcgttatca ctctgaaaat acacgttttt       480
     gcccgaaaat cacgcatttt cccttcgtaa attccccatg tcgccagaaa ataattcatt       540
     tccttaccgt aaatgcccct tttcacccaa aaatcacgca tttccccccg gaaaaacgca       600
     cctctgtcca aacatcacgc attttctacc cgaaaatacc acttttggct gggaaataac       660
     acatttctcc cccaaatata ccacctttca ccccaaaatc acgcattttc tctcgag          717
//
ID   XEN1_I      repbase; DNA   ; VRT   ; 3182 BP.
XX
AC   AF057166;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Xenopus laevis retrotransposon-like element, partial sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Retrovirus; XEN1_I.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RA   Shim S., Lee K.S., Han K.J.;
RT   "A novel retrotransposon-like element in Xenopus laevis with a
RT   ventralizing activity.";
RL   Unpublished.
XX
RN   [2]
RA   Shim S., Lee K.S., Han K.J.;
RT   "XEN1_I.";
RL   Direct Submission to Genbank (03-APR-1998)Life Science, Pohang
RL   University of Science and Technology, San 31 Hyoja-Dong, Pohang
RL   790-784, South Korea.
XX
DR   Genbank; AF057166; Positions     273    3454.
XX
SQ   Sequence 3182 BP; 1020 A; 484 C; 684 G; 994 T; 0 other;
     ttggtgtgga ttcattgtct gcttgctcaa aagaaccaga aaccctagta agtgggttga        60
     ggtatattga tattattatt aatgatataa tatacataga aacttacaaa tggcgatcca       120
     gtgtaggagt tcaatgcatg gcatttaatc catatttatg agtgtgtaat attgtgtagt       180
     aaattaattg attgttttgt gttgttttaa ttgttgttaa aataatcatg gaggttttag       240
     ctaaaaagat ggccatggtc aaatgctcag gacagattgt taaatgtatg caaggatctc       300
     cagatccatg ggctaaggct caagattatg ttgccagggc aattcatgac aaatctctgt       360
     ctaaatcaaa gggtaaaggt gcactggttt atgctgcctg ttgcatagca gaacagtata       420
     aaatgttata tgtgcaaaaa gggaatcttg aagaaaaggt tcattgttta aatgttttag       480
     tagattctct aaaattttct gtagaaaatg ctgctgctat taatgttagc aaccagcaaa       540
     caactgcaga gtacaagcag gtttgcatag agaatgagca gctcaaacaa aggctgagag       600
     atgcagaaag tttggttgca accttcagag aagcaggggc tgatcattca aattgcaaat       660
     ctgagattaa acagttaaag gctcaattag gagcaagaga ttgtttagtt tctgcagtta       720
     aagtagagaa cactgctaaa aatgatagaa atgtaactga tgtgaaatgc ataagagaca       780
     gcaatatgaa ttgtgaatta gcagtcaaaa gtaaaatgct aaatgtggat tgttgtagac       840
     aggccaagcc tcctatagtg acattaaaat gtacagaaaa taggactgcg ggacaaaagc       900
     aggatgttcc taaagtacag gtttacaaac ctattcaacc caggaagcag cctggcagtg       960
     aaagggtgtt tgccataaag gctacccatc ctgagaaaca aagtgtgtac agtacagata      1020
     aaaagtgtac acaaaagaaa gtgtttagat gctatgcgtg ttccagagtt gggcacatag      1080
     caagaaattg taccatgcag ttttacaaca cgaacaatca taaaaatggg tacaatgcaa      1140
     atgaaagctg gaagtcctct aggtggggat tccaaaataa aagcaagagc tggaatacat      1200
     ggattcccta ccatgttctt aaaactcaga atgaaaggct gagtaaagaa aactttacac      1260
     tgaaaaatgc atggggaaag tttaaaactg agattgaaag tctcaaatct gagttttata      1320
     cattaaagag atcaaatgtc agtcaaacca caagtttagt gggaggtaat tgttcccaac      1380
     attaaaatca gtgctaatgt tttctatgag attgttttcc aggtaacagg atggcagatc      1440
     acaaaaagaa gaatttccaa acaattccct tccccctttt atctcatgaa aaaaaaaaaa      1500
     gagttataga ggaccttatc tatttggttt tatttttact ttttgtactt aaggaaaagc      1560
     ctctaaattg atatggtaca gtcaggttga acaaattcta aaatattttt tttattttta      1620
     atagttagaa ttgcctgcac tgtggagttt tgaaatagtt gctgtgttag ttgtagaagg      1680
     gtaaaaagca ctgaggcata ttttgaattt ttatttttgg tgtatttttg cctgagtgac      1740
     atttttgttt tactcttgtt tcagcagcaa caggttagaa catttttaca tagactgcat      1800
     gctgcttgat aacatcagta tgtgtttccc aatcaaagca gtattcactc tatattttct      1860
     tttgaatttt tttccaaatt ttgtctgtcg ttgtttgtat ttgtagttta taattatttg      1920
     cagttctcaa ggtggggtgt ttaaaaaaaa aaaacactcc aatatacagt ctacatgtta      1980
     aaagttacca gaaccttctg ttctcagcaa atgcaaatgt acaagtgtct tacattgata      2040
     tgcatggtgt tatttacata aaagatctgc gagagacagc agtttacttc ttgttttgtt      2100
     cttttgttgt taaataactc ttgtgtgggg tctgtcccaa atgatctctc ttctgataat      2160
     aatgctaatt tctgttttgt tgggttgtga taatcaggca tgaaactgat atggaaatac      2220
     tgagacaaag gcgagaaaca tctcactagt gatttgccca agatagtgct gcacacttta      2280
     gtgtagtgta ttttctgaat ttcctgaggc cagtattggt attacattca cacctattgc      2340
     tgaattgagg tgctctttcc agctatgctg attaataaaa tgtgccacag acatttacac      2400
     cctaccctaa aataataaaa tgttttccct gtgtggtctc tttaatatga aaactgtggt      2460
     aagcaggaat gtgttgggtg ttgcaaacac caaagtgcaa agaccctggt ttgttaaaag      2520
     tagaggccta aaatgggatc cagcccagac ctgggtggag cagggtcagg tgataagtgg      2580
     ggcacagaca aagcagcgca ataagctgga tattaaacct ctaaaagttg tggtgtgggc      2640
     tcataactgg ctgaagggtt atagattatg aatatgaaca actgtgagtg tttatgtaat      2700
     taggttaaaa ttcatctcac agtaccccaa atttaaaata tttgtgagtg ttacatcatt      2760
     taggtctcaa taatcctatc actttcagtt ccaatacata cagtaacagt gcattaatgg      2820
     gtgtccctgc attggcaatg ttatgctttt tgttaattta gagggctctt tccttgtgaa      2880
     gtccttcgcc ctctaggtgg ggatttgtaa gaaattgcca tcttgatttg ttatttaata      2940
     tgaaagcggt tgttcaggga acttacatga agccctgatt atcataacaa aggttttcct      3000
     gtgactacta aggtctatgt ctgctgtggg gaccataaaa ctgattttgt atgcgagaaa      3060
     acttgctcaa caggatgtag gcaagttggg ggtttatcac agcatcttgg cagttgggaa      3120
     ggtttctatg ggggcaggtg agaacccagg ataaaagaac acgagcagac atgtgaaggg      3180
     gt                                                                     3182
//
ID   XLTAN       repbase; DNA   ; VRT   ; 79 BP.
XX
AC   V01437;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Xenopus laevis tandem repeat unit (clone X132).
XX
KW   Repetitive sequence; XLTAN; tandem repeat.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-79
RA   Spohr G., Reith W., Sures I.;
RT   "Organization and sequence analysis of a cluster of repetitive
RT   DNA elements from Xenopus laevis.";
RL   J. Mol. Biol 151, 573-592 (1981).
XX
DR   GenBank; V01437; Positions    1243    1321.
XX
SQ   Sequence 79 BP; 17 A; 31 C; 7 G; 23 T; 1 other;
     tactgctact gtaggcacca tctctcccta ctatacctgc tatcccacag tcacactccc        60
     ttcccagant ctattatcc                                                     79
//
ID   GGLTR10C_I  repbase; DNA   ; VRT   ; 2624 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Internal portion of ERV2 Endogenous Retrovirus from chicken.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-2624
RA   Smit A.F.;
RT   "GGLTR10C_I - ERV2 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Internal sequence of GGERVK10;  derived non-autonomous element.
CC   GG000586, GG0000067, GG000612, GG000135, GG000068.
XX
SQ   Sequence 2624 BP; 611 A; 595 C; 847 G; 567 T; 4 other;
     aatggtgccc cgtgtgaggc gcagactgtg ttttgatgcc ctctgcgcgg ctacgagatg        60
     tggggtgacg ccgtagcacg agatttgggg tgacgcccag cccgagtacc ctgaggagag       120
     ggggagcctg cagaagacga ctggggtgac gccctgcaga agatcgtggc gacgacgata       180
     gtgccggccg gcaagtagaa cctgtgttgc ggtggggtcc gggggggacg acgggacgcc       240
     cacggaggac ccgtgtggtg acggcggtgt cgantgtgaa ttcgcggtga cggcgacggg       300
     ctgactatgg aacatgttct taaggtattg cttcagtttt gtaaggatta ctttggcaag       360
     tatgctcctt ctaagaagga tatccacgca gttatttccc ggttagagcg ggagggggag       420
     gttaaagccc cccacgagat ccttgatcac cggaggtggg atgatctcac ctctgngttc       480
     gcgcaacata ttatgagtgc tcaggagggc gggtcggagt taaaaacttg gggtctgata       540
     ctgggggcgt tgaaagcggc cagagtggag ggaaaggtat tggcggaggc tcgatacctt       600
     ttgggtctcg gcggtggagg cgagacaccg gacccggtgg ggtccgatgg gggctcggga       660
     gcagtttctt gcaggggccg agaggagacg gagccgccaa tgaccgttgg cgagatggcg       720
     ccggctgagc cgaccgcgct cagttcaaaa gaagacaaac aacaagagag tggatgttcg       780
     ttgtctcgtc cccctccccc gtatccggac ccctcaggcg gaacgttgta tcctttatca       840
     gaattacgtc agtgttacct gactcaaggg ggcggaggaa gctgtgatct acacgggcag       900
     gatcaactta ctgcccacat ggggagggac cagacgaaag gtccgtccaa tgcggacagg       960
     gggcatagcc taccgtctct ggtcactccc aggggcggta gtgcgagtga tagtgtagag      1020
     gagaaagaag ggactggctt tgagtgcagg gggagggatc aaatgacgga ctggaatcgg      1080
     attagatcgg aggctgaggg gaagggtata gttccagagg cattcccggt gattgtgagt      1140
     gatcgtggtc ccgaatgggt gccgcctgac cccgggggtg ttgcgcgcct ggtggaattt      1200
     atggataaaa gaggcctgaa atcgcctctg acgttaaatg cactacaaac tttggctgca      1260
     ccggggcctc tcctcccccg tgacatcaca aacctaatgc gtatggtgct caggctggtt      1320
     caatatacgt tatgggagac ggactggatg gccgagttgg gggggcgtgc cggggcggca      1380
     ggggtcggcc cgggccgctc cctgcgtggg accggcatcc agcggctttc agggaaggcc      1440
     gtgggagtgg cttcgcccca gggccagcta gcgagactaa ggccagggga gctaatagca      1500
     gccacagatg caatggtgga agcgtttaat aaacttgtgc ataaggccga accacctgct      1560
     ccgtgcacag atattaccca gggcccgaat gaatcctttc aaagctttgc agacaggctt      1620
     ttagctgctg cagaggggtc tgatctcccg gnaccggccc aagggccagt gatcattgac      1680
     tgcctgcagc agaaatcgca tgacaatgtt aaggcattgc tgcgagccgg cccgagtacg      1740
     cttaataccc cgggagaagt tattcagtat gtcttagata agctcaaggt ggctcattta      1800
     actaatgaag ggctagccac agctattgtc gcagctgttg gcccgcgaca gcaaagatcg      1860
     ctgcagcagc aagggctgtg tttccgatgc ggccagtatg gccacgttag agcacaatgc      1920
     ccctgtgggg gaggccagtc agggcctcct gatcacagga agggcttgct aaagggtatc      1980
     cgtggtcggg tatgcggcag ttaaacatca tgaatctggg aaattctgtg ggtaccatcg      2040
     cgaaaagtaa taccagatat aagtagcata tctgcaaaaa ctgagtctag gtgcgagttt      2100
     tctacagaaa ttcttcgttg gcagaccgaa gccaactcca gaacaactga gggacagacg      2160
     atgggatcaa gaaccactcg tcaagaggag cactacacct gcaacgctga cacttccgat      2220
     gttgctgatg tttatggtgt ccntggcgat tacagcgtgt cacaaacaac tacaatggac      2280
     acaagaacat atgcagaaga ttaaagaaga gcgtgatccc tttggaagct ggctggacgg      2340
     actgtttggg ggaacgggtt catggttaaa gcaattgctt aaagctctcg cagtaggatt      2400
     tgcaatcttt gtgtgtattc taatctgtct tccatgcttt gtaggatgct tgcagaactg      2460
     ccttcaacga atgatggaca agacttttga ctatcgcatt gagtatcata gattgcgtga      2520
     aaaattatag aggggtttag gttgttgcgt tcgtgctgta acggggcaag gcttggccga      2580
     gcacgggaaa gaattccctg ttgctctgat gattgcttaa gaat                       2624
//
ID   Charlie-Galluhop repbase; DNA   ; VRT   ; 1299 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 2)
XX
DE   Chicken putative Charlie-Galluhop fusion transposon - a
DE   consensus.
XX
KW   Charlie-Galluhop; putative class 2 transposon.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-1299
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [1] (Consensus)
XX
CC   A putative fusion between two transposons; the Mariner-like
CC   Galluhop and Charlie. The element has 5' and 3' ends similar
CC   to Charlie12, with an internal region consisting of a full
CC   length Galluhop element, complete with 2 bp TA target site
CC   duplications, characteristic of Mariner-like transposons.
XX
SQ   Sequence 1299 BP; 383 A; 256 C; 276 G; 381 T; 3 other;
     caacaagagg cccagctcca ggcacacacc catcactcac aacagccaca caatggtgtg        60
     caatgggcac cgtctaggct gaagacaggg catggggtgc agtgcagtgc tgactcagtg       120
     atggcacgta actatatgca ctttggtaca ctggctgaac acagtcctgt gaaaataggc       180
     agccgtgttt tccttttgat aaaggaattt gagaaagttt caagattgca tttttttttg       240
     caactccatt ttcagttgac ataaatacat tacctgcaaa ttttcaaatg gaatgtaaga       300
     gttgcaatca aaaaaatctg atcatgtctc tttaccagac ttttataagc cctctcttac       360
     cagagaaaaa tatccctcac ttcacaatca caccttattc atgtcatcgc tttttggcag       420
     tacttacatt ttgaacaact gtttcaagga tgaagtacag gaagagtaaa atttcatcaa       480
     aaatctctga tgaacacctt gagaactcac taagaattgc agccactgcc attgaaccag       540
     actgatgcat tagtttcaca aaaacaaggt caaatatccc actagtttta tggttttgtt       600
     gctctctttt tttttaataa aaatattaaa aattaaaaag ttttgttact tatatacaaa       660
     aaatattata tattttatga gggctgctcc gaaagtaatg cctcctattt tattatgttg       720
     gcccacaaca tcagaggtgg atgttggtgg tatggcagta gaggttgaac cttcccacca       780
     atattccatt acattttgtt gctgtgtgac agatggcagc agaggggcag tctgacaaaa       840
     tggcrtctga catggaagtg cgtatgaagc aaaggtgtgt cactgaattc ctccatgcag       900
     aaaaaaatgg cacccactga cattcattga ygcttgctga acgtttatgg agaccaaaca       960
     gtggatgtga gcacagtgag gggtgggtgg tgcgtttcag cagtggtrac agtgggtcac      1020
     ctccgtggtg cagattttta tgagcatggc atgcaggctc ttgttcattg ctggtaaaaa      1080
     tgcatagcta atggtggtga ctatgttgaa aaaagtgttt tgtagctgag aatttgctct      1140
     atcaaatagt gttattgtgc tctttgtatc tgttgtagtt tccatggaaa taaataggag      1200
     gcattacttt tggagcaacc tacgtatatg cagcccaaga caattcctct tcactcagtg      1260
     cggcccaggc aagccaaaag gttggacacc catgcccta                             1299
//
ID   GGLTR5B_LTR repbase; DNA   ; VRT   ; 543 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; GGLTR5B_LTR;
KW   Hitchcock_LTR; LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-543
RA   Smit A.F.;
RT   "GGLTR5B_LTR - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000076, 5' and 3' 150 bp 80-85% similar to GGLTR5. Part of it
CC   known as GGREP1 5 bp FSD; 11% subst  (similar sequence occurs in
CC   goose).
XX
SQ   Sequence 543 BP; 129 A; 110 C; 139 G; 164 T; 1 other;
     tgtcttagtt tcagctggga tggaattgtt ttcttcagag tgtctggtat gatgctatgt        60
     tttggttcta ggagaaaaac aatgttgata acacaccgat gtttatagtt gctgctaagc       120
     agtgttgtac agagccaagg ccattctcag tgaagggccc aaggagctgg gagggaacag       180
     aattaggaca gctgacttaa actggccaaa gggatattcc ataccatatg acatcangcg       240
     gaaggagttt tgaagggggt gggagttcat ctcgctctct tccgctgctc ggggggctag       300
     ctgggcatcg gtcggggggt ggtgagcaat tgcttgtgca tcacttgtta tatacattca       360
     tatatatata tatagtcata actattatcc ttttcctttt ctctatctta gtaaatagtt       420
     ttatctcaac ccacgagttc tacttttgtt ttttcccgat tctctccccc atcccactgg       480
     gaaggggggg agtgagcgaa cgactgtgtg gtgctcagcc acctgccggg ttaaaccaca       540
     aca                                                                     543
//
ID   GGERVL-C    repbase; DNA   ; VRT   ; 5136 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; GGERVL-C;
KW   Kronos_I; LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-5136
RA   Smit A.F.;
RT   "GGERVL-C - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   Seen with GGLTR3B2/3, -C2 and -G1/2 LTRs. ORF1 15-1841, ORF2
CC   1973-4843. GG000098, GG000319, GG000428.
XX
SQ   Sequence 5136 BP; 1464 A; 1091 C; 1401 G; 1166 T; 14 other;
     attattggtg gagaatgcgg gcagctatgg atctctactt cattttaaga gcattgtata        60
     gaggactaag gaccattatg ttccttggaa catattggtt cctttttaag ttcatcatgt       120
     tcagtgtcgg agttgcatat acgtatagcc aattaagggc actgatggag atacctgcct       180
     ggttcctata catcccggct aatttaacag acaatatgat gtttggactg gtttccaggt       240
     gctcttctca gttccttatg catgttcggg atgccagctt aggtactgtg ctatcagtct       300
     ctctgaatgt attctctgca atagtatttt acattatgtg gaggaagctt tccccaaaac       360
     cagagaatgt tgagtggcag ggaatatgga gaggtttagg aaagagatta gaagcgtggg       420
     gacccccggt gtcatgggat ttcactcttg aacacctgtg ggatcctgag aaactaagcg       480
     agtatttgag taagggatgg tgcagctcag aaagatctga ggaggaacgg cttatttggg       540
     gcttggcttg tgcttaccga gctctatata atactattct ggagagagag agtttccaaa       600
     ctgagatccg aaccaaaggg ggaagcctcc aagtcaaacc cgaccaatca caggaggcac       660
     cagtatcaat gtcagttgcc cctgtggaag gncagaaatg gaaacgggtg tcctcgcgtc       720
     tagaacggaa agaagaagcg gaggaagtag aggaagatcc aggcgagggg ccctccccaa       780
     aaccaccatc accgagaaag gcaacngaga aaantaagag acatggagag gagagtgagg       840
     aggagggagt cactgttacc actattcgtc gacccctgaa aatgactgaa atccaaggct       900
     caagaaagga gtttatacgg cacccgaacg aaactgttgt cacctggttg cttcggtgtt       960
     gggacaacgg ggccagtagc gtgtccctag atggtaacga agctcgccaa ctaggaaaca      1020
     ttgccngaga ctcagctatt gacagaggga ttagtagatg tctggacgga gtcgccaccc      1080
     tctgggaacg aatgttatta gctgtgaagg aaagatatcc cttcaaagac gatctggagc      1140
     ctgagatgag aaagtggaat actgttgaga aaggcatcca gtatttgaga gaaacagccg      1200
     tggtggaaat gctgtatgat cccacgtttg ttcctaacga tccacgccag gaccatgatc      1260
     ctgagagagt taggagtacg cccgatatat ggcggaagct cacaagaaca gcaccggaaa      1320
     ggtacgccag tacactagta gtaacgttcg atagatacga ggaccnacan agaagacccc      1380
     cagtttttga actgattctt acacttcaaa actttgaaca aaaattaccn ccatcccatg      1440
     cttccatctc agccatctcc caagtgacag aaagactaga taaagtggag aagaaacagg      1500
     acggcatgct ggaggaattg tctctagtga ttaatcgtga tgaacccgtg gcagtatcag      1560
     aaacacccga tgaagaccag gatgatcaaa agagtctgct gaaggagctg atcaaactga      1620
     ttaaagtctc agctatcaaa ggcaaacgcc tccctgctcg agcaaatgac agcagtaaat      1680
     ctatgtcgcg tgctgccctg tggagctact tacgtgagca tggagaagac atgaagaagt      1740
     ggcataaaaa acccactcct gcactacgag cacgggtgag agaattacaa aacagatcaa      1800
     ccaccactga aattgctccc gttactgcag gtaacnaata gaggggccct gccctcagtc      1860
     ggggggggaa agggataata gagtgtattg gactgtgtgg attcgatggc ctggcacatc      1920
     agaaccacag gaatataagg cactggtgga caccggtgcc cagtgcactc tgatgccctc      1980
     gagttataaa gggacagaat cgatttatat ttctggagtg actgggggct ctcaggaatt      2040
     gtctgtgttg gaggcagaaa taagcctcac cggtaaagac tggcagaagc atcctatagt      2100
     gactggacag ggggctccat gcatacttgg tatngattat ctcagaaggg ggcatttcaa      2160
     ggatcccaag ggataccgat gggcttttgg aatagctgct gtagatacag acaacgttaa      2220
     gcagctgtct gtcttgcctg gcctgtcaga agacccgtct gttgtggggt tactacaggt      2280
     aaaagagcag caggtaccaa ttgctacaaa aacggtgcac agacggcagt accgcaccaa      2340
     cagggattcc ttgctcccca ttcataagct gattcgtcag ctagagagtc agggagtgat      2400
     cagcaaaacc cactcacctt ttaacagccc catatggccg gtgcgtaaag ccagtggaga      2460
     atggaggctg acggtagact accgtggcct gaatgaagtc acacccccac tgagcgctgc      2520
     tgtgccggac atgttagaac tccagtatga actggagtcg aaagcagcca aatggtatgc      2580
     caccactgac attgccaatg cattcttttc cattcctttg gccacagaat gcaggccaca      2640
     gtttgctttc acctggaggg gcgttcagta cacctggaac cgtttgcccc aggggtggaa      2700
     acacagccca accatttgcc atgggttgat ccaaaccgca ctggaacagg gcggtgctcc      2760
     cgagcacctg cagtacattg atgacattgt tgtgtggggc gatacagcag aggaagtttt      2820
     taagaaagga gagcaaataa tccaaattct tctgcgtgct ggtttcgcta ttaagcgaaa      2880
     caaagtgaaa ggacctgccc aggaaattca gttcctagga gtaaaatggc aagatgggcg      2940
     tcgtcacatc ccagnagatg tgatcaacaa aatcaccgct atgtctccac ccactagcaa      3000
     gaaagagaca cagtcttttc tgggtgtagt gggcttttgg agaatgcacg ttccaaacta      3060
     cagcctcatt gtaagccccc tctatcaggt gacgcggaag aagaataatt ttgcgtgggg      3120
     tcctgagcag cagcaggctt ttgagcagat taaacaggag atagcccgtg ccgtggccct      3180
     ggggccagta cggacgggac aggatgtaaa gaacatcctc tacactgctg ctggagagaa      3240
     aggtcccact tggagtctgt ggcaaagagc ctcaggagag acccgaggcc gacccctggg      3300
     attctggagt cgagcgtaca gggggtctga agagtgctac actccaactg aaaaggagat      3360
     cttagccgcg tatgaggggg ttcgggctgc ttctgaagta atcggtactg aaacgcagct      3420
     ccttctagca cctcgactgc cagtgctgaa ctggatgttc aagggaaagg ttccctccac      3480
     ccatcatgct actgatgcca cttggagtaa gtggattgcg ctgattacgc aacgagctcg      3540
     gatggggaac ctcagccgtc caggaatcct agaggtgatc atggactggc ctgaaggcaa      3600
     aaagtttgga acatcaccag cagaagaggt atcgcgtgct aaagaggccc caccatacaa      3660
     tgaactacca gaaaatgaaa agaaatatgc cctgttcaca gatggatcgt gtcgtattgt      3720
     ggggaagcat cgcagatgga aagctgctgt gtggagcccc acacgacaag ttgcagaggc      3780
     cactgaaggt aaaggagaat caagccagtt cgcagaggta aaggctgtcc agctggcctt      3840
     agatgttgct gaacgggaga ggtggccaat gctttatctt tatactgact catggatggt      3900
     ggcaaatgcc ttatgggggt ggttacagca gtgggagcaa aacaactggc aanggagggg      3960
     taaacctatt tgggctgctg aactgtggaa agacattgct gcccgaataa agaatatggt      4020
     tgtaaaggtg cgccatgtag atgctcatgt gcccaagagt cgggctactg aagaacaaca      4080
     aaataaccat caggtagatc gagctgccag aattgaggtg gctcaaatag acttggactg      4140
     gcagaacaag ggtgaattat ttctagctcg gtgggcccat gagacctcgg gccatcaagg      4200
     aagagatgca acatataagt gggctagaga ccgaggggtg gacttaacta tggacgctat      4260
     tgcacaggtt attcatgact gtganacatg cgccacaatt aaacaagcca agaggatgaa      4320
     acctctctgg ggggaagggc gatggcaaaa gtataaatat ggggaggcgt ggcaggttga      4380
     ttatatcacc ttgccacgat ctcgcaatgg taagcgttat gtgcttacca tggtggaggc      4440
     aaccactggg tggcttgaaa catatgcagt accccatgct accgcccgaa acaccatatt      4500
     aggtctcgag aaacaagtcc tgtggcgaca tggcactcca gaaagaactg agtcagataa      4560
     tgggactcat ttcaaaaatt ctcttgtaaa tacttgggcc aaagatcatg gcattgagtg      4620
     gatttatcat atcccctatc atgcaccagc ttctggtaaa attgaacgat acaatgggtt      4680
     gttaaaaacc atgttgaaag caatgggtgg cggaacattt aagcactggg agaagcattt      4740
     ggcagaagcc acctggttgg tcaacactcg aggatctatc aatcgtgatg gtcctgccca      4800
     tccagctccc tacatactgt naagggagat aaggtccctg tagtacatgt aaagaacatg      4860
     ttgggaaaag cggtttgggt ccttccagct tctgggaagg gcaaacctct ccgtggaact      4920
     gtttttgccc agggacctgg gtccacttgg tgggtgatgc agaaaaatgg ggatgttcaa      4980
     tgtgtaccac aagggaattt gatgctgggg gagtgcagtc agtaattcca tgtatatata      5040
     tatgtatatg tgtgtgtgtg tttaatgcat gttaattatn gtttgtttgt atatatatat      5100
     taagcatgat gtagtgatgt agaataaggg gtggaa                                5136
//
ID   CR1_B       repbase; DNA   ; VRT   ; 4081 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 2)
XX
DE   Gallus gallus CR1_B mother element.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1_B; non-LTR;
KW   retrotransposon.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RA   Smit A.F.;
RT   "CR1-B non-LTR retrotransposon.";
RL   Direct Submission to Repbase Update (SEP-2004).
XX
RN   [2]
RP   1-4081
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [1] (Consensus)
XX
CC   ORF-1_protein:
CC   MGAPRRKVGVTKTVETQAEVPCSSRRKTVAKKTVESQTEDLCMHERKADGKICVATQTEVPSQD
CC   ASTQVTGCVDCWSLAFAVPDDGGRTCIRCDQLNDLLSLVIDLKEEVERLRTIKDCEREIDRWCQ
CC   SLSASRSWHTAEALHGACQPLPPCKQVVEGKQPADGAAVSSLSSPPPSSNLREEEEWKQVPARR
CC   GGHPPSQPSSAPQVPLHNRFEALELEGGVSETVEGGPPVRLPRVKWSTPHLTTASTWKDGRVVV
CC   IGDSLLRGTEGPVCQPDPTRREVCCLPGAQVRDISRKLPGLIRPSDYYPLLIIQAGRDEIVEKS
CC   LRSIKKDFRGLGRVVDGAGVQVVFSSVPSVAGKGTERIQKTHLLNKWLRGWCKHRNFVGFFFDH
CC   GAIYSAPGMMAADGSSLSLKGKRILAEELAGLIERSLN.
XX
SQ   Sequence 4081 BP; 1007 A; 850 C; 1240 G; 843 T; 141 other;
     taatgtatca tattgatcgc caaggttcac tgctcggagc catctcaggc agagccgctg        60
     cgactattag cgaggtacag gggggttccg atcgcttccc tcacacgaag gatccctgcc       120
     tagaagaagc ctttgagagg gcagcgatgt gtcactgccc atcagagacg gagaggagga       180
     gtcggggtgt gagatccacg taggctgttt taacgagtgt tactgagcct gctggttacc       240
     atgggtgcac cccggcggaa ggttggtgtc acaaaaactg tggagaccca ggcagaggtc       300
     ccatgctcaa gcaggaggaa gacagtagcc aagaagactg tagagagcca gactgaggac       360
     ctgtgtatgc acgagaggaa ggctgatggt aagatatgtg tggcgactca gactgaggtc       420
     ccgtcacaag atgctagtac acaggtcact ggctgtgttg actgctggag cctggccttt       480
     gcagtgccag atgatggagg ccgcacttgc ataagatgtg accaactgaa tgacttactc       540
     agccttgtga ttgacctgaa ggaggaggta gagaggctga ggaccataaa ggactgtgag       600
     agagagattg acaggtggtg ccaatccctg tcagcttcga gatcttggca cacggctgag       660
     gctctgcatg gagcatgtca acccctgcca ccttgcaaac aggtggtaga agggaaacaa       720
     ccagcagacg gtgctgcagt gagctccctg tcctctcctc cccctagcag caatttgaga       780
     gaggaggagg agtggaaaca ggtaccagct cggcgaggtg ggcatccccc atcccaacca       840
     tcctcggctc cccaggtgcc tctgcacaat aggtttgagg ccctggaact tgagggaggg       900
     gtgagtgaga ctgtggaggg aggcccaccc gtgaggttgc ctcgggtgaa gtggtcgacg       960
     ccacacctca cgactgcctc cacctggaag gacggaagag tagttgtcat aggtgactcc      1020
     ctcctgcgag gaacagaagg ccctgtatgt cagcctgacc ctacccgtag ggaggtgtgc      1080
     tgcctccctg gggcacaggt cagggacatt tcaaggaaac ttcctggact gattcgccct      1140
     tctgactatt accccttatt gataattcag gctggcagag atgaaattgt tgagaaaagc      1200
     ctgaggtcta tcaagaaaga cttcagggga ctggggaggg tagttgatgg agctggcgtg      1260
     caggtggttt tctcttctgt accatcagtg gcaggaaagg gtactgagag gatccaaaaa      1320
     acccacctct taaataaatg gctcagaggt tggtgcaaac acaggaattt tgttggtttt      1380
     ttttttgacc acggggccat ttactcagca cctggcatga tggctgcaga tggaagtagc      1440
     ctgtctctaa agggtaagag gatcttggct gaggaactgg cgggactcat tgaaaggtct      1500
     ttaaactagg tatgaagggg gaaggggaca aaacgagggc cactggggtt gagcgggtcg      1560
     ttagagggct tgtaccaaac tccatgggca aagatggtgg agtacaaagg aatggagtag      1620
     ggcaggggga tgctgggaat gctgctgttc taggggaccc tagatcccct ataaaggtgg      1680
     cgagagggaa agcccagcta aagtgccttt ataccaatgc acgcagcctg agtaataaac      1740
     aggatgagtt ggaaactgtg atgcacttgg aaagttatga ccttgttgct atcaaagaaa      1800
     catggtggga tgactcccac aactggaata ctaccattga tgggtattgg ctctttagaa      1860
     gggataggag aagtaggaag ggtgggggag ttgccctcta tgtcaaagag tggatagact      1920
     gtgaggagct ccctctgaga aacagtcagg aacaggtcga gggcctgtgg gttagaatta      1980
     gggatgggac taataaaggt cagctggtga taggggtata ctacaggcca cctgatcaag      2040
     gggaggctgt tgacgaggct ttcttgctcc agatgcagga ggcaacgtgc tcacgggccc      2100
     tcatcctggt gggggacttc aaccatccgg gcatctgttg gaaagaccac acggcgagct      2160
     gcaagaggtc cagaaggctt gtggaatcca ttgatgacaa ctttctggta caggtagtgg      2220
     acagaccaac cagaggtgaa gcgttgctgg acctgctgct caccaatgcg gaagagatca      2280
     tcaaagatgt caacgttgga ggcaacctgg gctgcagcga ccatgccctg gttgagttag      2340
     tgatctcgag ggatttgggc ctggtaaagg gtggggtcag gaccctgaac tttggaatag      2400
     caaactttaa gctgttcagt agattgttgg ccaagattcc ctgggatgct gtccttaaag      2460
     ataaagatgt tgaggagagc tggctactct tcaaggatgc cctcctgaaa gcacaagagg      2520
     tctccatccc tctgaatagg aaagtgggca gacgagatag gaaaccggca tggcttggca      2580
     aggacctgct gggcacactg agagcgaaga aaggtgcgtg caagctctag aaacaagggc      2640
     gtgtcacctg ggaagagtac agggatgctg tccggacttg cagatgtagg atcaggaaag      2700
     ccaaggcaca ggtagaactg aacttggtga gggatgtgaa aaacaataag acattctaca      2760
     ggtacattgg ccagaaaaga caggccaaaa caggtgtacc ttctttagta aatttaaaag      2820
     gagaactggc ttcaacggac aaagagaaag ctgaggtact gaatgagttc tttgcctcga      2880
     tcttcactgg tggccaggat tccagtcttt ctcacgttcc tgagccctgc acccccaagc      2940
     ctccaggtgg ggaccagggg ggtaaatccc ctcccactgt aagggcagag caagtccaag      3000
     accgcctcat gagactggat gagtacaagt ctttggggct ggatggcgtg catcccaggg      3060
     ttctgaagga gctggctgag gtggttgcca tgccgctctc catcatattt gagaagtcgt      3120
     ggctgtcagg agaggtccca gatgactgga ggaagggtta catcactccc atttacaaga      3180
     aagggagcaa ggaggaccca gggaactaca ggccggtgag tctcacctct gtgcctggga      3240
     agaccatgga acagatccta ctggatgaca tgctcgatca catgaggaat gagcgtgtga      3300
     tccagaatcc caccacatnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3360
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt ctcctgggct ccatcatgag      3480
     aggggtggcc agcagggacc ctttggagat tgtccctctt tactctgctc ttgtgaggcc      3540
     cctttaaaag tactgtgtcc ttgtatggag cccacagtac aagaaagaca gagagctgtt      3600
     ggagagggtc cagaggaggg ccatgaagat gatcaggggg ctggagcacc tcccctatga      3660
     agacaggctg aaggagctgg tcttattcag cctggagaag agaaggctgc ggggtgacct      3720
     cattgcagcc tttcagtacc tgaagggagc ctataaacag gaagggagta aactctttga      3780
     aagggtagat aacagcagga caagggggaa cggttttaag ttgaaagagg gaagatttag      3840
     gttggatgtt agggggaagt tctttaccag gagagtggtg aggtgctgga ataggctgcc      3900
     ctgagaggtt gtggatgccc cgtccctgga ggtgttcaag gccaggttgg atgaggccct      3960
     gggcaacctg gtctaataaa tggggaggtt ggtggccctg cctggctggg gggttggaga      4020
     ttcatgatcc ttgaggtccc ttccaaccca ggccattctg tgattctgtg atgcacggag      4080
     a                                                                      4081
//
ID   LINE2_WA1   repbase; DNA   ; VRT   ; 663 BP.
XX
AC   .
XX
DT   28-MAR-2002 (Rel. 7.02, Created)
DT   28-MAR-2002 (Rel. 7.02, Last updated, Version 1)
XX
DE   Walterinnesia aegyptia non-LTR retrotransposon LINE2 reverse
DE   transcriptase pseudogene - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; LINE;
KW   LINE2_WA1; retrotransposon.
XX
OS   Walterinnesia aegyptia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Elapidae; Elapinae; Walterinnesia.
XX
RN   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol 18(12), 2213-2224 (2001).
XX
RN   [2]
RP   1-663
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_WA1: non-LTR retrotransposon LINE2 reverse transcriptase
RT   pseudogene from Walterinnesia aegyptia.";
RL   Direct Submission to Repbase Update (12-MAR-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 663 BP; 112 A; 181 C; 205 G; 158 T; 7 other;
     tagacctctc agcggcrtty kataccatcg accatggtat cttaytgcga cgtcttgagg        60
     ggttgggagt gggrggcact gttttgcagt ggttctcctc ctacctctcg ggacgatcgc       120
     agtcggtgtt gacggggggc cagaggtcgt cccctaggtt actcccttgt ggggtgcctc       180
     aggggtcggt tctctcaccc cttttgttca acatctacat gaagccgctg ggtgagatca       240
     tccgtggctt tggggtgagg tatcatcagt acgctgatga tacgcaattg tatatctcca       300
     cccctggcca catcagtgat gccctctccg tgatgtcccg ctgcctgaat gcggtgcaga       360
     tctggatgga agggaacatg cttcgactca atccggccaa aaccgagtgg ttgtgcatac       420
     cggcatctck atccgatgca gaggtaccat cattggtcat gggggaggag gtgttgcccc       480
     ccgtggacag ggcgcggaat ctgggggtcc tcctggactc acggctcaar ttggaggagc       540
     aggtgggggc cgtggccagg ggggcctttg cccagatccg gctggttcgc cagctgcgcc       600
     catatttgga ccgagatgcc ctgcgcacga tcactcaggc actcgtgatt tcccgcctgg       660
     act                                                                     663
//
ID   SMAIDIV     repbase; DNA   ; VRT   ; 239 BP.
XX
AC   .
XX
DT   22-JUL-1999 (Rel. 4.06, Created)
DT   22-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   SINE element from Salmonidae (SmaI-div family - a consensus).
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SMAIDIV;
KW   SmaI-div family; retroposon.
XX
OS   Oncorhynchus keta
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus.
XX
RN   [1]
RA   Okada N.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (12-MAR-1997). Norihiro
RL   Okada, Tokyo Institute of Technology, Faculty of Bioscience and
RL   Biotechnology; 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa
RL   226-8501, Japan (E-mail:mhamada@bio.titech.ac.jp,
RL   Tel:045-923-1136, Fax:045-923-1136).
XX
RN   [2]
RA   Hamada M., Kido Y., Himberg M., Reist J., Cao Y., Hasegawa M.,
RA   Okada N.;
RT   "A newly isolated family of short interspersed repetitive
RT   elements (SINEs) in coregonid fishes (whitefish) with sequences
RT   that are almost identical to those of the SmaI family of repeats:
RT   possible evidence for the horizontal transfer of SINEs.";
RL   Genetics 146(1), 355-367 (1997).
XX
RN   [3]
RP   1-239
RA   Jurka J.;
RT   "SMAIDIV.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 239 BP; 68 A; 48 C; 51 G; 72 T; 0 other;
     ttcattacac atactaaaat ggtcctttta gtatgtggtc ctttgtagat cagtaggtag        60
     agcgtggcgc ttgtaacgcc agggtactag gtttgattcc tgggaccacg catatgtaaa       120
     atgtaggcac gcatgactgt aaatcgcttt tggattaaac gtccgctaaa tggcatatgt       180
     tatattaaaa tattctctct tttcctccgg gatacccctg ccaagacgaa gaaacaaaa        239
//
ID   TC1L_SS     repbase; DNA   ; VRT   ; 1555 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Salmo salar.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; TC1L_SS; TC1_TF.
XX
OS   Salmo salar
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Salmo.
XX
RN   [1]
RP   1-1555
RA   Smit A.F.;
RT   "TC1L_SS - Mariner DNA transposon from Salmo salar.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   Salmon.
XX
SQ   Sequence 1555 BP; 523 A; 297 C; 334 G; 401 T; 0 other;
     aactatagtt tttggcaagt cggtttggac atctactttg tgcatgacac aagtaatttt        60
     tttcaacaat tgtttacaga cagattattt cacttacaat tcactgtatc acaattccag       120
     tgggtcagaa gtttacatgt actaagttga atgtgcattt aaacagcttg gacaattcca       180
     gaaaatgatg tcatggcttt agaagcctct gataggctaa ttgacataat ttgagtcaat       240
     tggaggtgta cctgtggatg tatgtcaagg cctaccttca aactcagtgc ctctttgatt       300
     gacatcatgg gaaaatcaaa agaaatcagc caagacctca gaaaaaaaat tgtagacctc       360
     cacaagtttg gttcatcctt gggagcaaat tccaaacacc tgaaagtacc acgttcatct       420
     gtacaaacaa tagtacgcaa gtataaacac catgggacct cgcagccatc ataccgctca       480
     ggaagacgcg ttctgtctcc tagagatgaa cgtagtttgg tgtgaaaagt gcaaatcaat       540
     cccagaacaa cagcaaagga tcttgtgaag attctggagg aaacaggtac aaaagtatct       600
     ttatccacag taaaaaggtc ctatatcgac ataacctgag aggccgctca gcaaggaaga       660
     agctactgct ccaaaaccca cataaaaaag ccagactacg gtttgcaact gcacatgggg       720
     acaaagattg tactttttgg agaaatgtcc tctggtctga tgaaacaaaa atagaactgt       780
     ttggccataa tgaccattgt tatgtttgga ggaaaaaggg ggagacttgc aagccgaaga       840
     acaccatcct aaacatgaag cacgggggtg gcagcatcct gttgtggggg tgctttgctg       900
     caggagggac tggtgcactt cacaaaatag atggcatcat gaggaagaaa aatgatgtgg       960
     atatattgaa gcaacatctc aagacatcag tcaggaagtt aaagcttggt cgcaaatggg      1020
     tcttccaaat ggacaatgac cccaagtata cttccaaaga tgtggcaaaa tggcttaagg      1080
     acaacaaagt caaggtattg gagtggccat cacaaagccc tgacctcaat cctatagaac      1140
     atttgtgggc agaactgaaa aagcgtgtgc gagccaggag gcctacaaac ctgattcagt      1200
     tacaccagct ctgtcaggag gaatgggcca aaattcaccc aacttattgt gggaagcttg      1260
     tggaaggcta cctgaaacgt ttgacccaag ttaaacaatt taaaggcaat tctaccaatt      1320
     actagttgag tgtatgtaaa cttcttaccc accgggaatg tgatgaaaga aataaaagct      1380
     gaaataaata attctctcta ctattattct gacatttcac attcttaaaa taaagtggtg      1440
     atcctaactg acctaaaaca gggaattttt actaggatta aatgtcagga attgtgaaaa      1500
     actgagttta aatgtatttg gctaaggtgt atgtaaactt ccactttcaa atgta           1555
//
ID   hAT-1_PM    repbase; DNA   ; VRT   ; 353 BP.
XX
AC   AY577941;
XX
DT   07-2004 (Rel. 9.11, Created)
DT   07-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   hAT-1_PM is a nonautonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; Non-autonomous;
KW   CHARLIE3; nonautonomous DNA transposon; hAT superfamily; hAT-1_PM;
KW   horizontal transfer.
XX
OS   Petromyzon marinus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Hyperoartia;
OC   Petromyzontiformes; Petromyzontidae; Petromyzon.
XX
RN   [1]
RP   1-353
RA   Kapitonov V.V.;
RT   "hAT-N1_PM, a nonautonomous hAT transposon in the sea lamprey
RT   genome.";
RL   Repbase Reports 4(11), 304-304 (2004).
XX
DR   Genbank; AY577941; Positions   48455   48807.
XX
CC   hAT-N1_PM was detected as a single copy hAT transposon. It is
CC   91% identical to the primate CHARLIE3 hAT transposon. It is a
CC   very strong indication of the horizontal transfer involved in
CC   evolution of hAT transposons.
XX
SQ   Sequence 353 BP; 81 A; 111 C; 90 G; 71 T; 0 other;
     caggggtccc caacccccgg gccgcggact ggtaccggtc cgtggtctgt tatgaactgg        60
     gccgcacagc aggaggtgag cggtgagtcc gcgcgtggcc tgcccatcat tttatttacc       120
     acttccgtcc gcgcctcttt cctgcactgc gcacttgtct cagtcacagt tttggtaagc       180
     ccacaagcta accctagcca aaatgagtat ggaacaattg tcactggaaa gcttctttga       240
     aaagggggaa aaccccaaag atgaacaccc cccccccccc ccggtccgtg aaaaaatagt       300
     cttccacgaa accggtccct ggtgccaaat gccaaaaagg ttggggaccg ctg              353
//
ID   TOL2_OL     repbase; DNA   ; VRT   ; 4026 BP.
XX
AC   D84375;
XX
DT   21-APR-1997 (Rel. 2.03, Created)
DT   22-JUL-1999 (Rel. 4.06, Last updated, Version 2)
XX
DE   DNA transposon Tol2.
XX
KW   DNA transposon; Interspersed Repeat; TOL2_OL; TOL3_OL; Tol2.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RA   Hori H.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (10-APR-1996). Hiroshi
RL   Hori, Nagoya University, Division of Biological Science;
RL   Furo-cho, Chikusa-ku, Nagoya, Aichi 464-01, Japan
RL   (E-mail:hori@bio.nagoya-u.ac.jp, Tel:052-789-2504,
RL   Fax:052-789-2974).
XX
RN   [2]
RA   Koga A., Suzuki M., Inagaki H., Bessho Y., Hori H.;
RT   "Transposable element in fish.";
RL   Nature 383(6595), 30-30 (1996).
XX
DR   GenBank; D84375; Positions       1    1433.
XX
CC   repeat_unit 1..19
CC   /note="5' terminal inverted repeat"
CC   repeat_unit 4010..4026
CC   /note="3' terminal inverted repeat"
CC   CDS 320..673
CC   /note="ORF1"
CC   CDS 1512..2570
CC   /note="ORF2"
CC   CDS 2668..2976
CC   /note="ORF3"
CC   CDS 3358..3714
CC   /note="ORF4".
XX
SQ   Sequence 4026 BP; 1209 A; 754 C; 747 G; 1316 T; 0 other;
     cagaggtgta aagtacttga gtaattttac ttgattactg tacttaagta ttatttttgg        60
     ggatttttac tttacttgag tacaattaaa aatcaatact tttactttta cttaattaca       120
     tttttttaga aaaaaaagta ctttttactc cttacaattt tatttacagt caaaaagtac       180
     ttattttttg gagatcactt cattctattt tcccttgcta ttaccaaacc aattgaattg       240
     cgctgatgcc cagtttaatt taaatgttat ttattctgcc tatgaaaatc gttttcacat       300
     tatatgaaat tggtcagaca tgttcattgg tcctttggaa gtgacgtcat gtcacatcta       360
     ttaccacaat gcacagcacc ttgacctgga aattagggaa attataacag tcaatcagtg       420
     gaagaaaatg gaggaagtat gtgattcatc agcagctgcg agcagcacag tccaaaatca       480
     gccacaggat caagagcacc cgtggccgta tcttcgcgaa ttcttttctt taagtggtgt       540
     aaataaagat tcattcaaga tgaaatgtgt cctctgtctc ccgcttaata aagaaatatc       600
     ggccttcaaa agttcgccat caaacctaag gaagcatatt gaggtaagta cattaagtat       660
     tttgttttac tgatagtttt tttttttttt tttttttttt tttttgggtg tgcatgtttt       720
     gacgttgatg gcgcgccttt tatatgtgta gtaggcctat tttcactaat gcatgcgatt       780
     gacaatataa ggctcacgta ataaaatgct aaaatgcatt tgtaattggt aacgttaggt       840
     ccacgggaaa tttggcgcct attgcagctt tgaataatca ttatcattcc gtgctctcat       900
     tgtgtttgaa ttcatgcaaa acacaagaaa accaagcgag aaattttttt ccaaacatgt       960
     tgtattgtca aaacggtaac actttacaat gaggttgatt agttcatgta ttaactaaca      1020
     ttaaataacc atgagcaata catttgttac tgtatctgtt aatctttgtt aacgttagtt      1080
     aatagaaata cagatgttca ttgtttgttc atgttagttc acagtgcatt aactaatgtt      1140
     aacaagatat aagtattagt aaatgttgaa attaacatgt atacgtgcag ttcattatta      1200
     gttcatgtta actaatgtag ttaactaacg aaccttattg taaaagtgtt accatcaaaa      1260
     ctaatgtaat gaaatcaatt caccctgtca tgtcagcctt acagtcctgt gtttttgtca      1320
     atataatcag aaataaaatt aatgtttgat tgtcactaaa tgctactgta tttctaaaat      1380
     caacaagtat ttaacattat aaagtgtgca attggctgca aatgtcagtt ttgctgtaat      1440
     cagagagtgt atgtgtaatt gttacattta ttgcatacaa tataaatatt tatttgttgt      1500
     ttttacagag aatgcaccca aattacctca aaaactactc taaattgaca gcacagaaga      1560
     gaaagatcgg gacctccacc catgcttcca gcagtaagca actgaaagtt gactcagttt      1620
     tcccagtcaa acatgtgtct ccagtcactg tgaacaaagc tatattaagg tacatcattc      1680
     aaggacttca tcctttcagc actgttgatc tgccatcatt taaagagctg attagtacac      1740
     tgcagcctgg catttctgtc attacaaggc ctactttacg ctccaagata gctgaagctg      1800
     ctctgatcat gaaacagaaa gtgactgctg ccatgagtga agttgaatgg attgcaacca      1860
     caacggattg ttggactgca cgtagaaagt cattcattgg tgtaactgct cactggatca      1920
     accctggaag tcttgaaaga cattccgctg cacttgcctg caaaagatta atgggctctc      1980
     atacttttga ggtactggcc agtgccatga atgatatcca ctcagagtat gaaatacgtg      2040
     acaaggttgt ttgcacaacc acagacagtg gttccaactt tatgaaggct ttcagagttt      2100
     ttggtgtgga aaacaatgat atcgagactg aggcaagaag gtgtgaaagt gatgacactg      2160
     attctgaagg ctgtggtgag ggaagtgatg gtgtggaatt ccaagatgcc tcacgagtcc      2220
     tggaccaaga cgatggcttc gaattccagc taccaaaaca tcaaaagtgt gcctgtcact      2280
     tacttaacct agtctcaagc gttgatgccc aaaaagctct ctcaaatgaa cactacaaga      2340
     aactctacag atctgtcttt ggcaaatgcc aagctttatg gaataaaagc agccgatcgg      2400
     ctctagcagc tgaagctgtt gaatcagaaa gccggcttca gcttttaagg ccaaaccaaa      2460
     cgcggtggaa ttcaactttt atggctgttg acagaattct tcaaatttgc aaagaagcag      2520
     gagaaggcgc acttcggaat atatgcacct ctcttgaggt tccaatgtaa gtgtttttcc      2580
     cctctatcga tgtaaacaaa tgtgggttgt ttttgtttaa tactctttga ttatgctgat      2640
     ttctcctgta ggtttaatcc agcagaaatg ctgttcttga cagagtgggc caacacaatg      2700
     cgtccagttg caaaagtact cgacatcttg caagcggaaa cgaatacaca gctggggtgg      2760
     ctgctgccta gtgtccatca gttaagcttg aaacttcagc gactccacca ttctctcagg      2820
     tactgtgacc cacttgtgga tgccctacaa caaggaatcc aaacacgatt caagcatatg      2880
     tttgaagatc ctgagatcat agcagctgcc atccttctcc ctaaatttcg gacctcttgg      2940
     acaaatgatg aaaccatcat aaaacgaggt aaatgaatgc aagcaacata cacttgacga      3000
     attctaatct gggcaacctt tgagccatac caaaattatt cttttattta tttatttttg      3060
     cactttttag gaatgttata tcccatcttt ggctgtgatc tcaatatgaa tattgatgta      3120
     aagtattctt gcagcaggtt gtagttatcc ctcagtgttt cttgaaacca aactcatatg      3180
     tatcatatgt ggtttggaaa tgcagttaga ttttatgcta aaataaggga tttgcatgat      3240
     tttagatgta gatgactgca cgtaaatgta gttaatgaca aaatccataa aatttgttcc      3300
     cagtcagaag cccctcaacc aaacttttct ttgtgtctgc tcactgtgct tgtaggcatg      3360
     gactacatca gagtgcatct ggagcctttg gaccacaaga aggaattggc caacagttca      3420
     tctgatgatg aagatttttt cgcttctttg aaaccgacaa cacatgaagc cagcaaagag      3480
     ttggatggat atctggcctg tgtttcagac accagggagt ctctgctcac gtttcctgct      3540
     atttgcagcc tctctatcaa gactaataca cctcttcccg catcggctgc ctgtgagagg      3600
     cttttcagca ctgcaggatt gcttttcagc cccaaaagag ctaggcttga cactaacaat      3660
     tttgagaatc agcttctact gaagttaaat ctgaggtttt acaactttga gtagcgtgta      3720
     ctggcattag attgtctgtc ttatagtttg ataattaaat acaaacagtt ctaaagcagg      3780
     ataaaacctt gtatgcattt catttaatgt tttttgagat taaaagctta aacaagaatc      3840
     tctagttttc tttcttgctt ttacttttac ttccttaata ctcaagtaca attttaatgg      3900
     agtacttttt tacttttact caagtaagat tctagccaga tacttttact tttaattgag      3960
     taaaattttc cctaagtact tgtactttca cttgagtaaa atttttgagt actttttaca      4020
     cctctg                                                                 4026
//
ID   GGSAT       repbase; DNA   ; VRT   ; 1211 BP.
XX
AC   X57344;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Gallus gallus repetitive DNA (satellite).
XX
KW   SAT; Satellite; Simple Repeat; GGSAT; satellite repeat;
KW   Repetitive sequence.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RA   Saitoh Y., Saitoh H., Ohtomo K., Mizuno S.;
RT   "Occupancy of the majority of DNA in the chicken W chromosome by
RT   bent-repetitive sequences.";
RL   Chromosoma 101(1), 32-40 (1991).
XX
DR   Genbank; X57344; Positions       1    1211.
XX
CC   59 repeats of 21-bp (average) subunit, from W chromosome of G.
CC   gallus.
XX
SQ   Sequence 1211 BP; 373 A; 388 C; 141 G; 309 T; 0 other;
     aattctcttc gaaaaaaacg cttttgcctg aaaatcacgc gttttctacc caaaaatacc        60
     aatattttgc ccggaaatca cgcatttaca cctcaaaaac gtcacttttc gcccaaaaag       120
     caagcatttt ctcttagaaa attttacccc caaaacacgc atttttacca taaaaatacc       180
     atttttcgca cgagaatcat gtatgttcag ttcaaaacta ctgcatttca ccccaaaatc       240
     acgctttttc cctccagaaa tgcaactttt taaatagaaa tcacgcgttt cctccacgaa       300
     aataccgcct ttcaccccaa aatcacgcat tttctctcca aaaataccac ctttctctcg       360
     aaaagcacgc atttccacac ggaaaatacc acttttccct tgaaaattcc cacattttct       420
     tctcgaaaat accacttctc accggaaaat aacgcctttc taccgcaaat acaccacgtt       480
     tcaccccaaa atcacgcatt ttcaccccga aaataccgcc tttcacccca aaatcacgca       540
     ttttcttccc gaaaatacca cctttcaaag gaaaatcact tcattttctc cccgaaaata       600
     ccacctttcc cccgaaaatc acgcattttc tgcgcgaagc aaccccattt ctcccaagaa       660
     ccacgcattt ttttcacgaa aattgtacgt tcaaaggaaa atcgcacatt ttctccctga       720
     acataccacc tttcacccaa aaattccgcg ttttccgcgt gaaggaaccc cgcttcacac       780
     gaatatcacg cattgtctac cggaaaatac cacttttcta acgaaaatca cgcactgtcc       840
     cgccgaaaac acaagttttc gcccgaaaat cacgcatttt cccccagaaa aaaagcacct       900
     ctgtccacaa gtcacgcatc ttgtacccga aaataccact tttctcctga aaatcccgca       960
     ttttcacccc acaaatgcca cttttcgcgc gaaaagcatt tccttcggga aaatcaccct      1020
     cttcaaccga aaaacacgtg ttttctcctt gaaaatacca tctttcgcct gagaatcacg      1080
     catgttcact tcgaaaatac cccatttccc cagaaaatct cgcactgtct cctcgaaaat      1140
     accctgagcg caggtccgcg catgcgcagt gcgatcgcaa atccacgcat acgcggtgct      1200
     ccccctgcga g                                                           1211
//
ID   CMR32SAT    repbase; DNA   ; VRT   ; 266 BP.
XX
AC   Y13109;
XX
DT   22-JUL-1999 (Rel. 4.06, Created)
DT   22-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   C.mrigala DNA satellite Cmr32.
XX
KW   SAT; Satellite; Simple Repeat; CMR32SAT; MboI repetitive element;
KW   tandem repeat.
XX
OS   Cirrhinus mrigala
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Cirrhinus.
XX
RN   [1]
RP   1-266
RA   Mandal K.R.;
RT   "CMR32SAT.";
RL   Direct Submission to Genbank (06-MAY-1997)R.K. Mandal, Bose
RL   Institute, Department of Biochemistry, P1/12 CIT Scheme VIIM,
RL   Calcutta 700 054, INDIA.
XX
RN   [2]
RP   1-266
RA   Padhi K.B., Ghosh K.S., Mandal K.R.;
RT   "Characterization of MboI satellites in Cirrhina mrigala and
RT   Clarias batrachus (Pisces).";
RL   Genome 41(1), 34-39 (1998).
XX
DR   GenBank; Y13109; Positions     266       1.
XX
CC   Complementary to Y13109.
XX
SQ   Sequence 266 BP; 85 A; 45 C; 53 G; 83 T; 0 other;
     gatcactaat agcggtttta tgcatctctg cctaggaaga gaaggcttgc tcagaaatgc        60
     tctaaaacta cttttctcgg tcagaaaacg ttagttatgc agtttcatga ataaagctga       120
     ggcacattaa aaatttttca tatgcatgaa agaaatgtta tttgcaattc agaaatacac       180
     ttcttgatgt gttagaagtt ttatgcatgg gaaatttagt cagagcctga atgcataaaa       240
     cgctcagtta aggccttcct cggatc                                            266
//
ID   SATH1_PL    repbase; DNA   ; VRT   ; 899 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Prochilodus lineatus satellite SATH1 sequence.
XX
KW   SAT; Satellite; Simple Repeat; HindIII satellite DNA; SATH1_PL.
XX
OS   Prochilodus lineatus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Characiformes; Curimatidae; Prochilodus.
XX
RN   [1]
RA   Jesus M.C., Galetti M.P., Moreira-Filho O.;
RT   "Isolation and characterization of two satellite DNA families
RT   (HindIII) in Prochilodus lineatus (Pisces, Prochilodontidae).";
RL   Unpublished.
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of P. lineatus SATH1 satellite.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 97%.
XX
SQ   Sequence 899 BP; 282 A; 266 C; 122 G; 225 T; 4 other;
     agcttaactg gagttatcag gctggctaca gcactaactc ttgattaagc catacaatta        60
     cctggagcaa ctaaccttgc tccagcacta atgcaagtta caactctaac cctagctccc       120
     acttcatatc tagcccaagc gctaagtcta gctgtcactt aaccctagtt ggagacttca       180
     acttaactcc agtactcatt ctagctatag cactaacttt tgattaagcc ctaaaagtag       240
     ctgcagcaaa aaccctaccc ttagcactaa cccgaggctc aaccctaacc ctagctggac       300
     cattaagcct agttcaagcg ytaaacccag ctgraaccma actctcgttc aagtcctaaa       360
     attaactcca gacttcatgc tagctacaac actaattctt gattaagcct taaaatgtcc       420
     tgcagcaata aaccttgctc cagcactaac gtgagcggca accttaaccc tagctcccag       480
     cccaaatcaa gctcaggcca taaccatggc tgaaagacaa acccttgktt caatcttaat       540
     tcttaactac agtaaacatg ctagctagag cactaactct gaagtatatc atacacttag       600
     ctacagcaat atacctttgt gcagatgtaa gacaagctgc aagcccaacc ttagctccaa       660
     ccccaaacct aaattaagcg ctaaccctag cggttactca aaccctcatt caagtcttaa       720
     acttaactcc agtcctcatc ctagccacag cactaacttt tgattaggcc tttaaattac       780
     ctgcagcaat gaatttttct ctggcataaa ggcaagctgc aaccctaacc ctagctccca       840
     ctctaaatct tgctcaagcg ctaaccatat ctgtaaatca aacccccatt caactctta        899
//
ID   piggyBAC-N1_OL repbase; DNA   ; VRT   ; 205 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Oryzias latipes putative piggyBAC DNA transposon.
XX
KW   piggyBac; DNA transposon; Interspersed Repeat; Non-autonomous;
KW   piggyBAC-N1_OL; putative nonautonomous DNA transposon;
KW   putative piggyBac family member.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RA   Naruse K., Mitani H., Shima A.;
RT   "A highly repetitive interspersed sequence isolated from genomic
RT   DNA of the Medaka, Oryzias latipes, is conserved in three other
RT   related species within the genus Oryzias.";
RL   J. Exp. Zool 262(1), 81-86 (1992).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of rice piggyBac DNA transposon.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [2] (Consensus)
XX
CC   piggyBAC-N1_OL has a 17 bp inverted repeat, and a putative 4 bp
CC   TTAA target site duplication. The repeat termini are CCC-GGG.
XX
SQ   Sequence 205 BP; 65 A; 46 C; 45 G; 49 T; 0 other;
     cccttgtgct atcttagatg accccaccct tacattgacg tgttctccct accatgacaa        60
     aggtggataa aggtggaaag atttcatgta atccatggac accagtgaag atcacaaatc       120
     attgaagaaa aaaggttcag agcactgtct agtgggtcta gatgacccaa ctcccaatgt       180
     taaagtgcct aggatagcac aaggg                                             205
//
ID   CENSTRIG    repbase; DNA   ; VRT   ; 354 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Centromere repeat region, from Strigidae owls.
XX
KW   CENSTRIG; Centromere repeat; tandem repeat.
XX
OS   Strigidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Strigiformes.
XX
RN   [1]
RA   Yamada K., Nishida-Umehara C., Matsuda Y.;
RT   "A new family of satellite DNA sequences as major components of
RT   centromeric heterochromatin in Strigidae owls.";
RL   Unpublished.
XX
RN   [2]
RA   Yamada K., Nishida-Umehara C., Matsuda Y.;
RT   "Direct Submission to Genbank.";
RL   Direct Submission to Genbank (10-FEB-2003)Kazuhiko Yamada,
RL   Hokkaido University, Chromosome Research Unit, Faculty of
RL   Science; North 10, West 8, Kita-ku, Sapporo, Hokkaido 060-0810,
RL   Japan (E-mail:kazuhiko@ees.hokudai.ac.jp,
RL   URL:http://noah.ees.hokudai.ac.jp/~CRU/home.html,
RL   Tel:81-11-706-2619, Fax:81-11-736-6304).
XX
RN   [3]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of owl centromeric repeat.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 95%.
XX
SQ   Sequence 354 BP; 95 A; 88 C; 92 G; 79 T; 0 other;
     gaattccctg ctagcacctt ctctgtgcct gggaaggcca agtgttcaca ttgtttcgca        60
     gaatcgcgtt tctgcagagg acacaaacgc ttgtttagga caaaagaaaa cactgagccc       120
     cacattcact gttgccctgg agagcttgca gagcactggg gaaaggcagg cagagaattc       180
     cctgctagca ccttctctgt gcctgggaag gacaagtgtt cacattgttt cgcagaatcg       240
     cgtttctgca gaggacacaa acgcttgttt atgacaaaag aaaacactga gccccacatt       300
     cactgttgcc ctggagagct tgcagagcac tggggaaagg caggcagaga attc             354
//
ID   NVSAT1      repbase; DNA   ; VRT   ; 222 BP.
XX
AC   J00955;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Newt (N.viridescens) satellite 1 DNA.
XX
KW   SAT; Satellite; Simple Repeat; NVSAT1; Repetitive sequence;
KW   Satellite repetitive element.
XX
OS   Notophthalmus viridescens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Caudata; Salamandroidea; Salamandridae;
OC   Notophthalmus.
XX
RN   [1]
RP   1-222
RA   Diaz O.M., Barsacchi-Pilone G., Mahon A.K., Gall G.J.;
RT   "Transcript from both strands of a satellite DNA occur on
RT   lampbrush chromosome loops of the newt Notophthalmus.";
RL   Cell 24, 649-659 (1981).
XX
DR   GenBank; J00955; Positions       1     222.
XX
SQ   Sequence 222 BP; 61 A; 47 C; 54 G; 60 T; 0 other;
     gatctggtac tgtggagggg tttatataca cattttggac cttgtgaagt gttttctaca        60
     ctcacatcca tgcaggggga aaacctgaat ccttacccga tttggagctc tttttcctgc       120
     gtagaaggag tgactccgtc cccatgaaac ttcataatgt cactaaagtt actaaaacag       180
     gcgcttggag gctagaaatg gtccaaaggc actgaaggga ca                          222
//
ID   GGERVL-A    repbase; DNA   ; VRT   ; 5915 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; GGERVL-A;
KW   Kronos_I; LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-5915
RA   Smit A.F.;
RT   "GGERVL-A - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   Seen with GGLTR3A, -B1/3, -C, and -F1/2 LTRs. ORF1: 317-2677,
CC   ORF2: 2810-5863. The gag protein partially matches that of ERVL
CC   (44% similarity only), as well as that of MLT1H. The pol protein
CC   is 55% similar (36% identical) to that of ERVL in mesozoic
CC   mammals. From pos 686-1175 ORF1 contains a tandem repeat of a 21
CC   bp unit AGAGAGAGTCTCCGAGCCGAG that slowly morphs into
CC   CGAGACACCCTCCAGTCCGAA, resulting in poly-QSERDTL string in the
CC   protein.  GG000227, GG000232 (pars), GG000221, GG000003,
CC   GG000092, GG000091, GG000097, GG000098, GG000025.
XX
SQ   Sequence 5915 BP; 1711 A; 1310 C; 1573 G; 1285 T; 36 other;
     ttcttggtgg agaatgcggg caaaagctgc tttttagctt tttagaacga atctctctct        60
     gctctcggag agcttcgttg ggaaagttta tctctttcgc aggtgctcac tgaaaacttg       120
     accttgaaag tccaggcgga ctgccaatat tctgggatat tttgtaaact ttgagcactg       180
     ctatcttgct tcngtaaaga gaaaggaaaa aaaaangatt ctgctttctc ttttanaccn       240
     gtttgcagag ggagctgcta attttacaga acttgtgatt tttaagcagg ctcccagtct       300
     ctccttcgaa tcctttatgn attttttgaa tgctcatctg atcacgttgt taatctccct       360
     gaatgcactg ttcgtcattg taattatttc actcagtatc tgtatttatn atattctgag       420
     gaagccttcc ccaaagccag agaatactga gtggcaggga gtgtggagag gcttgggaga       480
     gactttagag agatggacat cctcggtgtc atggaacttt actcctgaac acctgaaaga       540
     tcctgagagc ctaaacagat atttgagaca gggatgttgt ggctcaggca gatctgagga       600
     ggcacaaatg atttggggcc tggctaatgc ttatcgggcc ttattcaata ctatcccaga       660
     gagggagaga gtttctgaaa ttgagagaga gagtctccgn gccgaaagag agngtctcng       720
     agctgagaga gagagtctcc aagccgagaa agagaatctc cagnctgaga gagagagtct       780
     ccgagccgag agggagagtc tccgggctga gagagagant ctccaagccg agagagagga       840
     cctccaatct gagcgagana gtctccggnc cgagcgagan ancctccaat ctgagngaga       900
     caccctccaa tccgagagag acaccctcca atccgagcga gacnncctcc aatccgagcg       960
     agacgncctc cgatctgagc gagacaccct ccagtccgag cgagacaccc tccaatccga      1020
     gcgagacagc ctccaanccg agcgagacgc cctccaatcc gaacgagaca gcctccaatc      1080
     cgaacgagac ancctccaat ccgaacgaga caccctccaa tccgaacgag acaccctcca      1140
     gtccgagngg gacaccctcc agtccgaacg ggacgtactc cgaaccgagc gagatgccct      1200
     ccagcacgca aaattcagtc tccaaactga antaaccaaa attcagtctc atcgagncat      1260
     nctcnaatct gaactaaaca ccctcataat cgaacaagac agactccgag ccgagctgga      1320
     gagtgagagc atcggaactg accaacctga tcaaccgcag gaggcaccag aatcgatgtc      1380
     agttgcccct gtaagaggac ggaaaacgaa acgaatctca actcacttag aacagaagaa      1440
     agaggaggag gagaaagtag aggaagcaga cactgtaaga gaagaggagg aaagaggtcc      1500
     agaggagcgg ctccaagatc caggggaagc gcccctgagt ccaggggagg ggccctcaat      1560
     aagatcgcgg tcaccaacgc ccaggagggc aacaagaagt cctgaaagag taggaggtga      1620
     gcaagacatc gtnaccatta ctgatcgatc tctgaaaatg aatgaaattc gaggtctgag      1680
     aaaagacttt tcacgccacc caaatgagcc tattgtcacc tggttacttc gatgttggga      1740
     caatggggcc aacagtgtgt ngctagatag tagagaagct cgccaactgg gtggcattgc      1800
     tagggactca gccattgaca gaggtattag tacatgccag aacgaggcct tcaccctctg      1860
     gaagcggatg ctgttagccg taaaagaaag ataccccttc aaagatgatc tgatgcctga      1920
     gaaaaagaaa tggactgata tggaaaaagg catccgttat ttgagagaat gcgccgtggt      1980
     ggaaatgtta catggcccca ctttcattcc tgacgagcca gaccaagagc atgatcctga      2040
     gagagtcagg tgtacaccaa atatgtggcg tatattcaca aagactgcac cagaaaggta      2100
     tgccagtaca tttgcagcaa tgtatggcag aggggaaaga agacccctta taaatgaact      2160
     gattaataaa cttcaagact ttgagttaca tttaacccct ctacgagctt gtgtttcagc      2220
     cattacaaaa gtagctgaaa aactggacag aatggagagc aancaagaag atataataga      2280
     cgaactgtct accgtgcttn atgctgatgg atccatggtg gtatcagata catctgacgg      2340
     ggaccaggat tcccaaaaca gcctactgga ggggctgatc aaattggttt cctcccaacc      2400
     tgcatcatcc aacgtctcag ctatcaaaag aagacgtcct cctgctcgag caagtgacaa      2460
     cagtaagact atgtcgcgtn ttgccttgtg gcgttaccta cgtgaccatg gagaagatat      2520
     gaagaagtgg cataaaaaac ccactcctgc acttcaagca cgggtaaaag aattacaaga      2580
     cagatcaacc accaaggtga actcctccaa aaaggtgatt gctccagttg ctgcgggaca      2640
     cggcaatagc cgtaagaacg acagaggtaa caaatagagg ggccctgccc ccagccaggg      2700
     gggggaaagg gataatagag tgtattggac tgtgtggatt agatggcctg gcacatcaga      2760
     accacagaaa tataaggcac tggtggacac tggtgcacag tgcactctaa tgccctcgag      2820
     tcaccaaggg acagaatcaa tttatattca tggggtgact gggggttccc aagagttgac      2880
     tatgttggag gccgaaataa gcctcactgg taaagactgg caaaagcacc ctattgtgac      2940
     tggcccaggg gctccatgta tacttggtat tgattacctc agaaggggat attttaagga      3000
     tcccaagggg tatcgatggg cctttggaat agctgctgta gacacagaag gtgttaagca      3060
     gttgtctgtn ttgcctggcc tatcagaaga tccgtctgtt gtggggttgc tacgagtgaa      3120
     agagcaacag gtaccgattg ctacaaaaac ggtgcacaga cggcagtacc gcaccaacag      3180
     ggattccttg ctccccattc ataagttgat tcgtcaacta gagagtcagg gagtgatcag      3240
     caaaactcac tcacctttta acagccccat atggccagtg cgtaaagcca gtggagaatg      3300
     gaggctgacg gtagactacc gcggcctgaa tgaagtcaca cccccactga gtgctgctgt      3360
     gccggacatg ctagaactcc agtatgaact ggagtcaaaa gcagccaagt ggtatgccac      3420
     cactgacatt gctaatgcct tcttttccat tcctttggcc acggaatgta ggccacagtt      3480
     tgctttcacc tggaggggcg ttcagtatac ctggaatcgt ttgccccagg ggtggaaaca      3540
     cagcccaacn atttgccatg ggttgatcca agctgcactg gaacagggng gtgctcctga      3600
     gcacttacag tacattgatg acattattgt gtggggcaac acagcaaggg aagtttttga      3660
     gaaaggagag caaataatcc agatccttct gcgtgctggt ttcgctatta agcgaagcaa      3720
     agtgaaagga cctgcncagg agattcagtt cctaggtata aagtggcaag atggacgtcg      3780
     tcacatccca acggatgtgg tcgacaaaat cactgccatg tctccgccca ctaataagaa      3840
     agagacacag tcttttctgg gcgtagtggg cttttggaga atgcatgttc caaactatag      3900
     cctcattgta agcccccttt atcaggtgac gcggaagaag aatgattttg cgtggggtcc      3960
     tgaacagcag caggcttttg agcagattaa acaggagata gcccgtgccg tggccctggg      4020
     gccagtacgg acgggacagg atgtaaagaa catcctctac actgctgctg gagagaaagg      4080
     tcccacctgg agtttgtggc aaagagcctc aggagagacc cgaggccgac ccctgggatt      4140
     ctggagtcga gcatacaggg ggtctgaaga gcgctacact ccaactgaaa aggagatctt      4200
     agccgcgtat gagggggttc gggctgcttc cgaagtagtc ggtactgaaa cgcagctcct      4260
     tctggcacct cgactgccag tgctgaactg gatgttcaag ggaaaggttc cctccaccca      4320
     tcatgctact gatgccactt ggagcaagtg gattgcgctg attacgcaac gagctcggat      4380
     ggggaacctc agtcgtccag gaatcttaga ggtgatcatg gactggcctg aaggtaaaaa      4440
     gtttggaaca tcaccaggag aagaggtatc acgtgctaaa gaggccccac catacaatga      4500
     actaccagaa aatgaaaaga aatatgccct gttcacagat ggatcgtgtc gtattgtggg      4560
     gaagcatcgc agatggaaag ctgctgtgtg gagccccacg cgacaagttg cagaggccac      4620
     tgaaggnaaa ggagaatcaa gccagtttgc agaggtaaag gctgtccaac tggccttaga      4680
     tgttgctgaa cgggagaggt ggccagtgct ttatctttat actgactcat ggatggtggc      4740
     gaatgcctta tgggggtggt tacagcagtg ggagcaaaat aactggcaac ggaggggtaa      4800
     acctatttgg gctgctgaac tgtggaaaga cattgctgcc cgaataaaga atatggttgt      4860
     aaaggtgcgt cacgtagatg ctcatgtgcc caagagtcgg gctactgaag aacagaaaaa      4920
     taaccatcag gtagatcggg ctgccaaaat tgaggtggct caaatagact tggactggca      4980
     gaacaagggt gaattatttc tagctcggtg ggcccatgag acctcgggcc atcaaggaag      5040
     agatgcaaca tataagtggg ctagagaccg aggggtggac ttaactatgg atgctattgc      5100
     acaagttatt catgactgtg aaacatgtgc cataattaaa caagccaaga ggatgaaacc      5160
     tctctgggag gaagggcgat ggcaaaagta taaatatggg gaggcgtggc agattgacta      5220
     tatcaccttg ccacgatctc gcaatggtaa gcgttatgtg ctcaccatgg tggaagcaac      5280
     cactgggtgg cttgaaacat atgcagtacc ccatgctacc gccagaaaca ccatattagg      5340
     tctggagaaa caagtcctgt ggcgacatgg caccccagaa agaattgaat cagataatgg      5400
     gactcatttc aaaaattctc ttataaatac ttgggccaaa gaacatggca ttgaatggat      5460
     ttatcatatt ccctatcatg caccagcttc tggtaaaatt gaacgataca atgggttgtt      5520
     aaaaactatg ctgaaagcaa tgggtggtgg aacatttaag cactgggaga agcatctggc      5580
     agaagccacc tggttggtca acactagagg atctatcaat cgtgatggtc ctacccaatc      5640
     cagctcccta catactgtag agggagataa ggtccctgta gtacatgtaa agagcatgtt      5700
     gggaaaagca gtttgggtcc ttccagcctc tggaaagggc aaacctctcc gtggaactgt      5760
     ttttgcccag ggacctgggt ccacttggtg ggtgatgcag aaagatgggg atgttcaatg      5820
     tgtaccacaa gggaatttga tgttggggga gtgcagtcag tagttctatg tatatgtatt      5880
     aagcatgata taatgatgta gaataagggg tggaa                                 5915
//
ID   HE1_HJ      repbase; DNA   ; VRT   ; 364 BP.
XX
AC   .
XX
DT   28-FEB-2001 (Rel. 6.01, Created)
DT   28-FEB-2001 (Rel. 6.01, Last updated, Version 1)
XX
DE   HE1 SINE from Heterodontus Japonicus - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; HE1_HJ.
XX
OS   Mustelus manazo
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
OC   Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea;
OC   Carcharhiniformes; Triakidae; Mustelus.
XX
RN   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs.";
RL   Mol. Biol. Evol 16(9), 1238-1250 (1999).
XX
RN   [2]
RP   1-364
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (FEB-2001).
XX
CC   [2] (Consensus)
XX
CC   Internal portion is homologous to MER6 DNA transposon.
XX
SQ   Sequence 364 BP; 83 A; 70 C; 112 G; 93 T; 6 other;
     gagggcggca cagtggcgca gtggttagca ccgcagcctc acagctccag cgacccgggt        60
     tcaattctgg gtactgcctg tgtggagttt gcaagttctc cctgtgtctg cgtgggtttc       120
     ctccgggtgc tccggtttcc tcccacawgc caaaagactt gcaggttgat aggtaaattg       180
     gccattataa nattgycact agtataggta ggtggtaggg aaatataggg acaggtgggg       240
     aatgtggtag saatatggga ttagtgtagg attagtataa atgggtggtt gatggtcggc       300
     acagactcgg tgggccgaag ggcctgnttc agtgctgtat ctctaaacta aactaaacta       360
     awat                                                                    364
//
ID   GGLTR3F1_LTR repbase; DNA   ; VRT   ; 494 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; GGLTR3F1_LTR;
KW   Kronos_LTR; LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-494
RA   Smit A.F.;
RT   "GGLTR3F1_LTR - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000024, GG000025; 5 bp dups; 3% subst.
XX
SQ   Sequence 494 BP; 106 A; 132 C; 109 G; 147 T; 0 other;
     tgtcatggtt ttgtaacttc gctattggta ttccacatca taacatcatg gacaaaagag        60
     aagaactacg tatcccagag gacctcacgg tcagagaagg aagacacatc acggaagata       120
     cgtcatctgg ttgcgcgcgg tgcttcttca ctttcgcttg ctgccgggag aggagtgggt       180
     gtgctttcca agccgggcgc cttcatcaag taaggctttc ggtttcggaa actctctcac       240
     tctctctctc tctccctctc tatcgctctt tcgctctctc tccctcattc catttggttt       300
     attatactta ctcccaatta gattgtattg tatcgtgtca tcttgcatcc caacatcata       360
     gttagtaaaa taagttctcc ttcttagatt gttgccaccg cttcgttttt ctcgggaagt       420
     gaagggggag gggggcccgc aagcctaccg gccccctgtc acgggcacag atctatctag       480
     gtaactccgt gaca                                                         494
//
ID   HE1_MM      repbase; DNA   ; VRT   ; 342 BP.
XX
AC   .
XX
DT   28-FEB-2001 (Rel. 6.01, Created)
DT   28-FEB-2001 (Rel. 6.01, Last updated, Version 1)
XX
DE   HE1 SINE sequence from Mustelus manazo - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; HE1_MM.
XX
OS   Mustelus manazo
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
OC   Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea;
OC   Carcharhiniformes; Triakidae; Mustelus.
XX
RN   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs.";
RL   Mol. Biol. Evol 16(9), 1238-1250 (1999).
XX
RN   [2]
RP   1-342
RA   Jurka J.;
RT   "Consensus.";
RL   Direct Submission to Repbase Update (FEB-2001).
XX
CC   [2] (Consensus)
XX
CC   Internal portion is homologous to MER6 DNA transposon.
XX
SQ   Sequence 342 BP; 51 A; 74 C; 114 G; 95 T; 8 other;
     ggggcggcac ggtagcacag tggttagcac tgctgcttca cagctccagg gwccygggtt        60
     cgattcccag ctcgggtcac tgtctgtgtg gagtttgcac attctcctcg tgtctgcgtg       120
     ggtttcctcc gggtgctccg gtttcctccc acagtccaaa gatgtgcggg ttaggttgat       180
     tggccakgtt aaaaattgcc ccttagwgtc ctgrgawgcg taggttngag ggattagtgg       240
     gtaaaatgtg tgggggtagg gcctgggtgg gattgtggtc ggtgcagact cgatgggcyg       300
     aatggcctcc ttctgcactg tagggtttct atgatttcta tg                          342
//
ID   GGLTR7B_LTR repbase; DNA   ; VRT   ; 596 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from chicken.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-596
RA   Smit A.F.;
RT   "GGLTR7B_LTR - ERV1 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000033; 4% subst; ca 80% similar to GGLTR7B.
XX
SQ   Sequence 596 BP; 185 A; 112 C; 167 G; 132 T; 0 other;
     tgaagagtaa gaaagggttc agtaaaaaag gggtctgcag aaactaaggg taaaaggatt        60
     agaaatagct tacagaagca aatatgcaga ggccgctaga agaatgggat agtaacaaga       120
     tgggattagg acaatgcggg ggtagaagag ataaagatga gggtgtgaaa acagctcaag       180
     gacaccaggc aaggaggtga taaggtgtcc ccagagtaag ttagaactgg ttcgggggct       240
     acccctccct cagggtcaga agtttacagc gaggaagact acgagccttc gcgaggaaga       300
     ctacgggcct tcatccaacg accaccagga ggagaccccc actgctcatg acgcatgcgc       360
     gagggggagg gaccgtatgc taaggagttc tcggaaatgt aatgaatatg tatacgaatt       420
     ccgggaaaat cattgattat gtattagctc tgcctatatc tataccaagt ttttgtcctg       480
     atggcatgca agttaggagg agctatcccc cttgcatccg gctctgcgca gcgttgatta       540
     aaacatacct gattttataa ctactttgtg gttatagagt ttgattccgc aagtca           596
//
ID   CR1-D2      repbase; DNA   ; VRT   ; 1222 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   CR1 Non-LTR Retrotransposon from chicken.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1-D2;
KW   CR1_GG.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-1222
RA   Smit A.F.;
RT   "CR1-D2 - CR1 Non-LTR Retrotransposon from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1222 BP; 306 A; 273 C; 387 G; 255 T; 1 other;
     ggctttttat gatggcgtaa ctgcgtcagt ggacaaggga agagccactg atgtcatcta        60
     tctggacttc agtaaggcct ttgacacggt cccccataac atccttctct ccaaattgga       120
     aagatatgga tttgatgggt ggactgttcg atggacgagg aactggttgc gagatcgtac       180
     ccagagagtg gtggtcaatg gctcaatgtc cggatggaga tcagtgacga gtggtgtccc       240
     tcaggggtca gtactgggac cggtgctctt taacatcttc atcaatgaca tcgacagtgg       300
     gatcgagtgc accctcagca agtttgcgga tgacaccaag ctgtgtggtg cagtcgacac       360
     gcccgaggga cagggatgcc atccagagag acctagacag gctcgagcag tgggcccagg       420
     ngaacctcat gaggttcaac aaatccaagt gcaaggtctt gcacctgggt cgtggcaacc       480
     cccgctatca gtacaagctg ggggatgtaa ggatggagca cagccctgcc gaaaaggacc       540
     tgggggtact ggtggatggc aagctggaca tgagccagca atgtgccctc gcagcccaga       600
     aagccaaccg tatcctgggc tgcatcaaaa gaagcgtggc cagcagggcg agggaggtga       660
     tcctgcccct ctgctctgcg ctggtgaggc ctcacctgga gtactgcgtc cagatgtgga       720
     gtcctcagta caggagagac atggacctgt tggagcgcgt ccagaggagg gccacaaaaa       780
     tgatccaagg gatggaacac ctcccctacg aggacaggct gagagagctg gggctgttca       840
     gcctggagaa gagaaggctc cggggagacc tgagagcggc ctttcagtat ctaaaggggg       900
     gctgtaagaa agaaggggac agactcttta gcagggtctg ttgtgacagg acaaggggaa       960
     atggtttcaa actaaaagag gggagattta gattggatat aaggaagaag ttttttacaa      1020
     taagggtggt gaggcactgg aacaggttgc ccagagaggt ggtggatgcc ccatccctgg      1080
     agacattcaa ggtcaggctg gacggggctc tgagcaacct gatctagctg taggtgtccc      1140
     tgttcattgc aggggagttg gactagatga cctttaaggg tcccttccaa ctcaaacgat      1200
     tctatgattc tatgattcta tg                                               1222
//
ID   Gypsy1-I_GA repbase; DNA   ; VRT   ; 4383 BP.
XX
AC   AC146545;
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   19-JUL-2005 (Rel. 9.01, Last updated, Version 2)
XX
DE   Internal portion of Gypsy1_GA retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; 5-bp TSD;
KW   Gypsy retrotransposon; Gypsy1-I_GA; Gypsy1-LTR_GA; LTR; RNase H;
KW   Tf1 group; chromodomain; gag; protease; reverse transcripatase.
XX
OS   Gasterosteus aculeatus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Gasterosteiformes;
OC   Gasterosteidae; Gasterosteus.
XX
RN   [1]
RP   1-4383
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy1_GA, a self-primed Gypsy LTR retrotransposon from the fish
RT   Gasterosteus aculeatus.";
RL   Repbase Reports 4(1), 23-23 (2004).
XX
DR   Genbank; AC146545; Positions   44416   48798.
XX
CC   Gypsy1-I_GA is an internal portion of a young Gypsy1_GA LTR
CC   retrotransposon. The internal sequence is flanked by identical
CC   Gypsy1-LTR_SR long terminal repeats.
CC   Gypsy1_GA belongs to the Tf1 group of self-primed Gypsy LTR
CC   retrotransposons. Its reverse transcription is primed by a
CC   heteroduplex
CC   formed between a 11-bp portion of PBS (Gypsy1-I_GA, pos. 3-12)
CC   and
CC   the 10-bp 5' end of the Gypsy1_GA mRNA (Gypsy1-LTR_GA, pos.
CC   214-223).
CC   Gypsy1_GA encodes a 1462-aa Gypsy1_GAp polyprotein (Gypsy1-I_GA,
CC   pos.
CC   20-4381 and Gypsy1-LTR_GA, pos. 1-22) composed of the gag
CC   (pos.125-220),
CC   protease (pos.340-450), reverse transcriptase (pos.580-750),
CC   RNase H (pos.820-950), integrase (pos.1089-1241) and chromo
CC   domains
CC   (pos.1380-1442).
CC   The Gypsy1_GAp is 46% identical to the the Gypsy1_STp encoded by
CC   the frog Tf1-like element Gypsy1_ST. At the same time, Gypsy1_STp
CC   is 46% identical to the polyprotein encoded by another frog
CC   element,
CC   Gypsy2_ST element. Also, these proteins are over 40% identical to
CC   to proteins encoded by Tf1-like elements in fungi. Most likely,
CC   the fish and frog retrotransposons were transferred
CC   horizontally into the vertebrate genomes.
XX
FH   Key           Location/Qualifiers
FT   CDS           20..4381
FT                 /product="Gypsy1_GAp"
FT                 /translation="MDSADSGSGLTVLPTPLLQQTEEQFNAVHLGMQGMSE
FT                 RQESLHSQVTFLTSQVQRLMDRLDTFATPITVPAPASLPAASPPVVPPRLA
FT                 RPERFSGDSGDCRPFLVQCGLHFELNAPSFQTERSKVAYVISHLSGRAERW
FT                 ATAEWSRNSRICSSVQLFTETLSKIFNTTNPGREAARALMGFRQGNRRVSD
FT                 YAIEFRTLAADSGWNEESLFDAFLYGLAEPIKDLLINRELPEDVDSLIALV
FT                 VKIDKRLQDRGRSRPEYSAPVQRGQSTSAQQSSDGAEEPMQLGRTKLSPEE
FT                 RQRRVREGRCLYCGQRGHYLSNCPVRDQAAARYTLVSHTTVSSVRPSMQAK
FT                 LITPSQTVTYPFLVDSGADENFMDWRLAKRLNLKLIPLPKQLEAHALDGRL
FT                 LCKITHRTDPIQMIISERHSEALSFYLFDSPSHPLILGFPWLSKHNPHMNW
FT                 VTGEITSWDKDCSVTCIHAVSISKISHSSDVSSTKCLELPVSRSAVVSPRT
FT                 ASSDADFPDLSRVPPCYLDLKEVFNKTRAISLPPHRPYDCAIDLLPGTSPP
FT                 RGRLYSLSSPEVKTMTEYIDSSLAAGLIRPSSSPAGAGFFFVSKKDKTLRP
FT                 CIDYRGLNEITIKNRYPLPLISSAFELLRNAKIFTKLDLRNAYHLVRIREG
FT                 DEWKTAFNTPSGHYEYLVMPFGLSNAPAVFQALVNDVLRDMLNQYVFVYLD
FT                 DILIFSPDEDTHVKHVHQVLQRLLTHQLFVKAEKCEFHVSSVAFLGFIVSQ
FT                 DNIQMDPAKVSAVTEWATPASRKHLQRFLGFANFYRRFIRNFSTIASPLHK
FT                 LTSSNIKFQWSLPAERAFQELKERFTTAPILTLPDPNLQFVVEVDASDVGV
FT                 GAILSQRSEVDRKLHPCAFLSRKLSPAERNYDVGNRELLAIKVALEEWRHW
FT                 LEGAEQPFLVLTDHKNLEYIRSAKRLNSRQARWALFFNRFNFSLSYRPGSK
FT                 NTKADALSRLFDPGSAPRSPSTILPPSCVVGAVTWAIEQRVRQANVNGQVP
FT                 DGCPPNRLFVSIPLRPQVIHWAHTSRVSCHPGIRRTLFVVKQRFWWPSMER
FT                 EVREYVTACPVCARNKSSRRPPSGLLQPLPVPHRPWSDISLDFVTGLPPSK
FT                 GNTTVLTVVDRFSKMVHFIPLPKLPSAKGTADAVLLHVFRIHGFPKDVVSD
FT                 RGPQFVSQFWKAFCSLLGATVSLSSGYHPQSNGQAERMNQELETGLRCLVS
FT                 QNPTTWSNHLIWVEYAHNTLPSASTGLSPFQCAYGYQPPLFPDLEREVNVP
FT                 SAQRFVHRCRRIWKGVREVLLRSSVRTKGAADRRRTLAPTYRTGNRVWLST
FT                 RDIPLRVESRKLAPRFIGPFPISRVINPAAVRLQLPSSMRVHPTFHVSRIK
FT                 PALESPLVPPTKPPPPPRIVDGGPVYTVKRLLAVRRRGRGRQYLVDWKGYG
FT                 PEERKWVSTKNIVDPNLILDFHRLHPDRPETSSAVPRRGGTVMSSPEY"
XX
SQ   Sequence 4383 BP; 955 A; 1215 C; 1080 G; 1133 T; 0 other;
     gtacgaactg gccacaaaga tggattcagc cgactctggt tccgggctca ctgtcctgcc        60
     gacaccatta ctgcagcaga cggaggaaca atttaatgca gttcacctcg ggatgcaggg       120
     gatgtcggag cgccaggaga gccttcacag ccaggttacc tttctgacta gtcaggtcca       180
     acggctcatg gatcgtctgg acaccttcgc cactccgatt actgttccag ccccagcttc       240
     acttcccgct gcttccccgc ctgttgtccc gccacgtctc gctcgtcccg aaaggttctc       300
     cggggactct ggcgactgtc ggccctttct ggttcagtgt gggctccact tcgagttaaa       360
     cgcgccatct ttccagacgg aacgctccaa ggtggcgtac gtaatctcgc acctctctgg       420
     cagggcagag agatgggcaa cagcggaatg gtcaagaaac tcacgcatct gctcctcggt       480
     tcagctgttc actgagacct taagcaagat cttcaatacc actaatcccg gtcgagaggc       540
     ggcaagagca ttgatgggat ttcgccaggg caatcggcgg gtctcggatt acgccattga       600
     attccgcaca ttggcagccg acagtgggtg gaatgaggag tccttgttcg acgcattctt       660
     gtatgggtta gcagagccca ttaaagatct attaatcaac cgtgagttac cagaggatgt       720
     ggattcgctc attgctttgg tggtcaagat tgataaacgg ctccaggacc gggggagatc       780
     cagaccggaa tattctgctc ctgtccagag ggggcagtcg acttcagctc agcagtcctc       840
     tgatggggcg gaggagccta tgcagctggg gcgcaccaag ctcagcccag aggagcgtca       900
     acgtcgagtg cgtgagggta gatgccttta ttgtgggcag aggggtcact acctatcaaa       960
     ctgcccagtg agggaccagg cagcggcaag atatacactg gtgagtcaca ctactgtgtc      1020
     ttctgttcga ccttctatgc aagccaagct catcacacct tctcagactg tcacttatcc      1080
     tttcttggtt gactccgggg ctgatgagaa ttttatggac tggaggttgg cgaagagatt      1140
     aaatttaaaa ttaattcccc ttccaaagca attggaggct cacgctctag atggtcggtt      1200
     actatgtaag ataacgcacc ggactgatcc cattcagatg attatttccg agagacattc      1260
     tgaagccctg agtttttacc ttttcgactc tccatcacac cctctcattt tgggttttcc      1320
     atggctctcc aaacacaacc cccacatgaa ctgggtcaca ggggagatta caagttggga      1380
     caaagactgt tctgtaacct gcattcacgc tgtgtctatc tccaagatat cccactcttc      1440
     tgatgtttct tccaccaagt gtctagaact tcctgtgtct cgatctgcag ttgtctctcc      1500
     ccgcacagct tcatcggacg ctgatttccc agatctctcc cgagtccccc catgttatct      1560
     agacctcaag gaggtcttca acaagacacg ggccatctct ttaccacctc atcgacctta      1620
     tgactgtgcc attgacctgc taccaggcac ttcacccccc agagggcgcc tctattcctt      1680
     gtcttcaccg gaggtaaaaa ctatgacaga atatattgac tcctccctgg cagcaggact      1740
     cattcggccg tcctcctctc ctgctggtgc tgggttcttc tttgtgtcca aaaaagataa      1800
     gactctccgc ccatgtattg attatcgggg attaaatgag atcacaatca agaatcgata      1860
     tcctcttccc ctcatctcct ctgcgtttga gcttttaagg aatgctaaga tcttcaccaa      1920
     actggacctg aggaacgcct atcacttggt gaggataaga gagggggatg aatggaagac      1980
     cgcctttaat actccaagtg gtcactatga gtacctagta atgccctttg ggttatcgaa      2040
     tgcgccagcg gtattccagg cgttggtcaa cgatgtactt cgtgatatgt tgaaccaata      2100
     tgtctttgtc tatttagacg atatcctcat cttctcccca gatgaggaca ctcatgtcaa      2160
     gcatgttcac caggttctcc agcgtcttct cacccaccaa ctttttgtta aagcagagaa      2220
     atgcgaattt catgtgtcct ctgtcgcttt cctagggttc atcgtctcgc aagacaacat      2280
     ccagatggat ccggcaaagg ttagcgcagt gactgagtgg gctactcccg cttctcgcaa      2340
     acatctccaa cgttttctgg gctttgctaa tttttacaga cgtttcatta ggaactttag      2400
     caccattgct tctcctttgc ataaattgac ctcctcgaac ataaaatttc agtggtcatt      2460
     accggctgag agagcctttc aggaattaaa ggagcggttt actactgccc cgatcctcac      2520
     gctcccggac cctaaccttc agtttgtggt tgaggttgat gcctcagacg taggagttgg      2580
     ggccatactc tcgcaaagat cagaagtgga cagaaagctc catccctgcg cctttctgtc      2640
     ccggaaactt tcgcccgctg agcgaaatta tgatgtgggg aatagggagt tactagccat      2700
     taaagtggct ctggaggagt ggcgccattg gctggagggt gcggaacagc cgttcttagt      2760
     tttgactgat cacaagaatc ttgagtacat caggtccgct aaacggttaa attccagaca      2820
     ggccaggtgg gctttatttt tcaatcgctt caatttttct ctgtcatatc gccctggttc      2880
     taagaacaca aaagcagatg cactatctcg tttgtttgac cctggttctg ccccgagatc      2940
     tccctctaca atcttgcctc catcctgtgt ggttggggca gttacctggg ctatcgaaca      3000
     gagggtcaga caggcaaatg tcaatggtca ggtgccggac ggatgtcctc cgaaccggtt      3060
     gtttgtgtcg attccacttc gtcctcaggt catccattgg gctcatacct ctcgggtttc      3120
     ttgccaccct gggatacggc ggaccctctt tgttgtcaaa caacgcttct ggtggccatc      3180
     catggagaga gaggtcaggg aatatgtgac tgcctgtccc gtttgtgcgc ggaacaagag      3240
     ttcacgacgt ccaccctcgg gtctcctgca gccacttcct gtgccccatc gcccctggtc      3300
     tgatatctct ctggattttg tcaccggttt gcctccttca aaaggtaaca ccactgttct      3360
     aacagttgtt gacaggttct cgaaaatggt tcattttatt cccttgccca agctgccttc      3420
     agccaaaggg acagcagatg ctgtcctgtt gcatgttttt cgaattcatg gatttccgaa      3480
     ggatgtggtg tcagaccggg gcccacagtt tgtttcacag ttctggaagg cgttctgttc      3540
     cctcctcggt gccacagtca gcctctcctc cggataccat ccccagtcaa acggtcaggc      3600
     ggagcggatg aaccaagagt tggagaccgg actacgatgc cttgtctccc aaaacccgac      3660
     tacctggagc aatcatctca tctgggttga gtatgcacac aacacattac ccagtgcatc      3720
     taccggcctt tctccatttc agtgtgccta tggctaccaa cctccactgt tccccgactt      3780
     ggagagggag gtcaatgtcc cctctgccca gaggttcgtc catcggtgcc ggaggatctg      3840
     gaagggggtt cgggaggtcc ttctaagaag ctccgtccgt acaaaggggg cggcagaccg      3900
     tcgacggacc cttgcaccca cataccgaac aggcaataga gtctggctgt ctactcgtga      3960
     cattccccta cgtgtggagt cccgcaagtt ggctccacgg tttattggtc cgttccccat      4020
     ctccagggtt atcaaccccg ctgcagtgcg actccagctg cccagttcta tgagggtgca      4080
     tcccaccttt cacgtgtccc ggatcaagcc tgcattggag agcccgttgg tcccccccac      4140
     caagccccct cctcctccca ggatcgtcga tggagggccg gtgtacacgg tcaaacgcct      4200
     cttggcagtt cgccgccgtg gtcgcggtcg ccagtacttg gtagattgga aggggtacgg      4260
     tcctgaggag aggaaatggg tgtctacaaa gaacattgtt gacccgaacc tcattctaga      4320
     cttccatcgt ctacatcctg accggccaga gacgtccagt gccgtcccta ggaggggggg      4380
     tac                                                                    4383
//
ID   Birddawg_I  repbase; DNA   ; VRT   ; 5334 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 2)
XX
DE   Birddawg (GGERVL18) retrotransposon, internal sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; Birddawg_I;
KW   GGERVL18; LTR; retrotransposon.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-5334
RA   Smit A.F.;
RT   "GGERVL18 retrotransposon, internal sequence.";
RL   Direct Submission to Repbase Update (SEP-2004).
XX
RN   [2]
RP   1-5334
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [1] (Consensus)
XX
CC   Contains gag and pol ORFs. 70% similar to DNA sequence of
CC   primate HERVL18. gag of Birddawg, and gag of HERVL18 are 70%
CC   similar on protein level. Around 7400 copies in chicken genome
CC   (Wicker et al).
XX
FH   Key           Location/Qualifiers
FT   CDS           108..1613
FT                 /product="Birddawg_I_1p"
FT                 /note="ORF1"
FT                 /translation="MIPGQIPGFLGSPYYELATXIEKWGPLRVMGNISPFR
FT                 MADYFXGLSKDILITKERQLAASTVAWPLLNALNQAEMRANTLENENQLLX
FT                 DRTEKLEQELSILTGKKTTLHFPIGQVRNISIDNDQIPESTDLVDQENKNS
FT                 KSDLXAPLATDPLEIRPIITQKTKKIQDRPAGVPPDQWPPAQTHLHVTARP
FT                 YTATELMDLVQRFRQKPRESVPTWLLRLWDSGAESVVVNGPEISKLATMTV
FT                 HPALRQRLYAGVQYTNENHSIIDWLMAACRMVWPNKSDIPLHTGLWSSMED
FT                 LQNYIRELGIREAIYEDXFXSPDMVRFSAGMRDLILQQAPSHLYGTLVSIL
FT                 NPLVASESVVQQAAQLVADLGETERLRTRRNIRTXEEAEVLPVTKTRRPAV
FT                 RTPQSGPIRVSRKQMFNDLIRAGVQFAKIDRQPNHVLLQLWKQLKDNQKFQ
FT                 NYPKKPRVRIXDRXPTTTWNLEDFIVPSRKKKPPQVSRATMPEPPEAKDLA
FT                 IAQFMA"
FT   CDS           1712..4990
FT                 /product="Birddawg_I_2p"
FT                 /note="ORF2"
FT                 /translation="MALVDTGAETSIIYGDPTKFDGDRVMIGGFGGQTIPV
FT                 TQTWLKLGVGRLPPREYKVSIAPVQEYILGIDILWGLALQTTVGEFRLRQR
FT                 CISVRAVQAILRGHAKHEPICLPKPRRITNVRQYRLPGGQDEISRTVQELE
FT                 KVGIIRPAHSPYNSPIWPVRKSDGTWRMTVDYRELNKVTPPIHAAVPNIAS
FT                 LMDTLSREIKTYHCVLDLANAFFSIPIAEESQDQFAFTWGGRQWTFQVLPQ
FT                 GYVHSPTYCHNLVARDLANWRKPDNVNLYHYIDDLLLTSDSLEAVGQAADS
FT                 LTTYLQERGWAINPQKVQGPGLSVKFLGVVWSGKTKVLPSAVIDKVQAFPV
FT                 PTTPKQLQEFLGILGYWRSFIPHLAQLLRPLYRLTKKGQLWDWGRTEQDAF
FT                 QQAKLAVKQAQALGIFDPTLPAELDVHVTQDGFGWGLWQRQSSVRTPIGFW
FT                 SQVWHGAEERYSMIEKQLLAAYSALQAVEPITQTAEIIVKTTLPIQGWVKD
FT                 LTHLPKTGVAQAQTVARWVAYLSQRSSLSSSPLKEELQKILGPVTYHSDAP
FT                 KETLVAPPEKSPVQEGKYPIPEDAWYTDGSSKGNPSKWRAIAYHPSTETIW
FT                 FDEGDGQSSQWAELRAVWMVITKEPGDGILNICTDSWAVYRGLTLWIAQWA
FT                 TQEWTIHARPIWGKDMWLDIWNAVKHRTVRVYHVSGHQPLQSPGNDEADTL
FT                 ARVRWIENSPSENIARWLHQKLRHAGQKTMWAAAKAWGLPIQLSDIAQACR
FT                 DCDACSKMRPRSLPETTAHLARGHNPLQRWQVDYIGPLPRSEGARYALTCV
FT                 DTASGLLQAYPVPKANQAYTIKALTKLMSAYGTPQVIESDQGTHFTGAMIQ
FT                 RWAEENNIEWRFHLPYNPTGAGLIERYNGILKAALKTDSQSLQGWTKRLYE
FT                 TLRDLNERPXDGRPSALKMLQTTWASPLRIQITGTDNQVRPQIGNENNLLL
FT                 PAPENLXPGTHRIKWPWKVQVGPKWCGLLAPWGRLLEVGGSVVPPVIGTWP
FT                 TDIVVNTPVFIAKGTPIMSLWQIRTPPLVPDIVMQPQTSGQKVWYRRPGHA
FT                 PVQAEVLTQDRNTACILPWRADLPLLVPLKHLYYSP"
XX
SQ   Sequence 5334 BP; 1494 A; 1272 C; 1361 G; 1170 T; 37 other;
     cttggcgagg caggccaaat atactaaaat atatatatat gtntgtgtct tttctntgga        60
     atntctataa atgggtcagg ggggagaaca ttacccccct agacaaaatg atccctgggc       120
     agatcccagg atttctggga tccccctatt atgaactagc aaccatnatt gaaaaatggg       180
     gtcccctgcg ngttatggga aatatctccc cattccgcat ggcggactat tttcanggnc       240
     taagcaaaga tatactaatt acaaaagaac ggcagttagc tgcctctacg gtggcatggc       300
     cactgttaaa tgctttaaac caggctgaaa tgagggccaa taccttagaa aatgaaaacc       360
     agctattgng agaccgcact gagaaattag agcaagaact tagtatattg acggggaaaa       420
     aaacaacttt gcattttccg ataggncagg tccgtaatat ttcaatagat aatgaccaga       480
     ttcctgaatc aacggacctg gttgatcagg aaaataaaaa ttctaaatcg gatctngang       540
     ctccgcttgc gacggatccc ttggagatcc gtcctattat aactcaaaaa acaaaaaaga       600
     tacaagatag accagcaggg gtgccccctg atcagtggcc ccctgcccaa actcacttac       660
     atgtaacggc ccgnccatac acggcaacng aattaatgga cctggtacaa cggttccggc       720
     agaagccnag ggaaagtgta ccaacttggc tattaagatt atgggactcg ggggcagaaa       780
     gtgtcgtggt taacgggcca gaaatatcta aattggccac catgactgtg caccctgccc       840
     ttaggcagag attatacgcn ggcgtccaat ataccaatga aaaccattct ataatagatt       900
     ggttgatggc ggcatgccgt atggtatggc cnaataaatc agatatacca ttacatacag       960
     gnttgtggtc ctccatggag gaccttcaaa attacattcg tgaactgggc ataagagaag      1020
     caatatatga agacncattt ganagcccag atatggtnag attttcagcg ggnatgagag      1080
     acttgatctt gcagcaggcc ccttcccatc tatatgggac cttagtttct atactgaacc      1140
     ccctggtggc ctcagagtcn gtggtccaac aggctgccca actagtggct gatctggggg      1200
     agacagagcg cctgcggacc aggcgcaata ttcgaacant ggaagaagca gaggtcctnc      1260
     cagtaactaa aactaggagg ccagccgtac gaactcctca atcgggaccc atacgggtnt      1320
     cccgaaagca aatgtttaat gacctaatcc gggctggggt ccaatttgcn aaaattgatc      1380
     gccagcccaa tcatgtcctc ctccagctnt ggaaacagct gaaggacaat caaaaatttc      1440
     aaaattaccc caaaaaacct agggtaagaa ttatngacag antaccaacg acaacatgga      1500
     acttagaaga ttttatagtc cctagtagga aaaagaagcc tcctcaggtg tctcgggcca      1560
     caatgcccga gccaccngag gcaaaagact tagccatagc acagtttatg gcgtgacaag      1620
     ggatgctagt ccccctaggg cctccagatg ggaccggagg ccctatgtag aattgacgat      1680
     tttttggtcc cgaaagaata ttcagagagt tatggcattg gttgacacag gngcggaaac      1740
     atcaataatt tatggagatc cgactaaatt cgatggcgat agagtgatga ttggtggntt      1800
     tgggggacag accattccgg tcacccaaac gtggttgaaa ctgggggttg ggcgtctccc      1860
     accccgggag tataaggtgt ctattgcccc agtccaagag tacatcctgg gcatagatat      1920
     tttatggggt ctggctctcc agacgactgt gggagagttc agacttcgac aaaggtgcat      1980
     tagtgtccgg gcggtgcagg caatattgag aggccatgcg aagcatgagc ctatttgcct      2040
     gccgaaaccg cgccggatta ctaatgtnag acagtataga ctcccgggtg ggcaagatga      2100
     aatatcaaga acggtgcagg aattagaaaa agtnggcatt ataagacctg cacatagccc      2160
     atataattcc cccatatggc cagtgcgaaa gtcggatgga acatggagaa tgacggtgga      2220
     ttatagagaa ttaaataagg tcacgccgcc tattcatgca gccgtaccca atattgcctc      2280
     cctaatggac acattgagta gggagataaa aacctaccat tgtgtcctag atttggcaaa      2340
     tgcgttcttc agtattccaa ttgctgaaga atcgcaagat cagtttgcgt ttacatgggg      2400
     aggcaggcag tggacctttc aggtcctgcc acaggggtac gtgcattcgc caacatattg      2460
     ccataatcta gtggcgcgtg acctggctaa ttggagaaaa cctgataatg ttaacttgta      2520
     tcattatatt gatgatctcc tgttgacatc tgactcactg gaggcggtag gacaggcagc      2580
     agattcatta actacctatc tgcaggaaag aggatgggct ataaatcctc agaaggtgca      2640
     aggtccgggc ctgtccgtaa aattcctggg ggtagtttgg tcaggaaaga ccaaagtact      2700
     acccagtgct gtaatagata aggttcaggc attcccagtc cctacaacac caaagcagct      2760
     gcaggagttt ttaggtatat tgggatactg gcgctccttt atacctcatt tagcgcagct      2820
     gctgaggcca ctgtacagac tcacgaaaaa ggggcagcta tgggactggg ggagaacgga      2880
     acaggacgct ttccaacagg caaaactggc agttaaacaa gcccaggcat tgggtatatt      2940
     tgatcctacc ctcccagccg agttggacgt tcatgtcact caggatggct ttggctgggg      3000
     cctgtggcaa cgccagagtt ctgttcggac ccccattgga ttctggtctc aggtctggca      3060
     cggagcagaa gaaagatata gtatgattga aaaacagtta ttggctgcct actccgcatt      3120
     acaggcggta gagccgataa cccaaacggc tgaaatcata gttaagacca ccctgccgat      3180
     tcaggggtgg gtgaaagatc tgacccacct tcctaagacg ggggtggccc aagcacaaac      3240
     ggtggcacga tgggtcgcct atctcagcca gaggagtagt ctgtcttcat caccactaaa      3300
     agaagaactt cagaagatcc taggcccagt gacgtatcac agtgatgcac caaaagaaac      3360
     attggtcgct ccaccagaga agagtcccgt tcaggagggg aaatatccta ttcctgaaga      3420
     tgcctggtac acagatgggt ccagcaaggg caacccgagc aagtggagag cgatagcata      3480
     ccatccctcc accgagacaa tctggtttga cgagggggat ggtcagagca gccaatgggc      3540
     agaactgcga gccgtgtgga tggttataac caaggaaccc ggtgacggta tcctgaacat      3600
     ctgcacagat agttgggctg tgtaccgggg gctcactctt tggattgcac agtgggccac      3660
     ccaggaatgg actatccacg cccgaccaat ctggggcaaa gatatgtggt tagacatatg      3720
     gaatgcagtt aaacacagga ctgtacgtgt ctaccacgtt tctggtcacc aacccctaca      3780
     gtcaccggga aatgatgaag ccgacacact ggcccgagtt cgatggattg agaattcacc      3840
     atctgagaac atcgcccgct ggttacatca gaagctacgg catgctggac aaaagacaat      3900
     gtgggcagct gctaaagcat gggggctgcc catacagcta tctgacatcg cccaggcatg      3960
     ccgagactgc gacgcttgct ccaagatgag accgagatcg ttgcccgaaa caacagccca      4020
     tcttgctaga ggacacaatc ctctccagcg atggcaggtt gattacattg ggcccctccc      4080
     tcggtctgag ggggcgagat atgccctgac ctgcgtcgac actgcaagtg ggctactgca      4140
     ggcctatcca gtaccgaaag caaaccaggc atataccatc aaggcactta ccaaactgat      4200
     gtctgcctac gggacacctc aagtcatcga gagcgaccaa gggactcatt ttactggtgc      4260
     aatgatacaa cgctgggcag aagaaaacaa cattgaatgg cgattccacc tgccatataa      4320
     tccgacgggg gcaggcctca ttgaacgtta taacggtatt cttaaggctg ccctgaagac      4380
     agactcccag tccctgcagg ggtggacaaa gagactctat gaaaccctgc gggacctgaa      4440
     tgaaagacct ngagacggca gacccagtgc cctgaaaatg ctacagacaa catgggcctc      4500
     cccgcttagg atccaaatta cgggcactga taatcaggta agaccccaga ttggcaatga      4560
     aaataatctt ctgctccctg cccctgagaa tctagancca ggtacccata gaataaaatg      4620
     gccttggaag gtgcaggtag gaccaaagtg gtgtggccta cttgcacctt gggggagatt      4680
     attggaggtg ggaggctcgg tagtccctcc ggtaataggt acatggccta cggacattgt      4740
     ggtcaacact ccggtcttca ttgctaaagg gacccccatc atgtccctgt ggcagatcag      4800
     gacaccccct ttggtgcctg atatagttat gcagccgcag acatctggcc agaaggtatg      4860
     gtacaggcgg ccggggcatg ccccagtaca agccgaagtg ttgacccagg atagaaatac      4920
     ggcctgtatc ttgccctgga gggcagacct tcccctcctg gtacccctga aacatctgta      4980
     ttactccccg tgagtctttg agcctctagg atcaccggaa ggaacgaaat gccatcaaag      5040
     cgttccagtg ttgctgtgag atcacgtgcg acacccggtg atggtctaca tgggactgat      5100
     ggagcatagg atggacctgc accncacgac tacatgcctc cagtaacacc atcgagcact      5160
     ggcccatgaa agaacatgaa ctttcaccat accgatcatc actcgtctta aattgtgtca      5220
     acatacatcg cgacgggaaa ttgtataagc gtcgcgatgt gtcggatctc tgtattaggg      5280
     aagactcacc ctttagttaa ctcaatcatt ggttcatgcc gtgaaggggt ggag            5334
//
ID   Charlie12_GG repbase; DNA   ; VRT   ; 2329 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   hAT DNA transposon from chicken.
XX
KW   hAT; DNA transposon; Interspersed Repeat; Charlie12;
KW   Charlie12_GG.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-2329
RA   Smit A.F.;
RT   "Charlie12_GG - hAT DNA transposon from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000088, GG000054, GG000052 Typical Charlie NTCTAGAN target site
CC   duplications. 80-85% identical at DNA level to mammalian
CC   Charlie12 element over pops 346-2241. Interal deletion products
CC   appear to have a few substitutions compared to the autonomous
CC   elements. 15% subst. Related to Charlie-Galluhop.
XX
SQ   Sequence 2329 BP; 769 A; 462 C; 448 G; 635 T; 15 other;
     caggcatgtc caacccgcgg cccacgggcc gcacgtggcc cagcncagcc cgtcctgcgg        60
     ccgccccctg ccccgcgcca tcatggcggc ggctcttccc cgccgagcgg cccggcccgg       120
     ccccgggcgc gcacccatcg ctcagcaaca accaaacatc ggtgtgcnat tagcactgtc       180
     tgagctgaaa ccaggacacg gggagggcgc agtgcagtgc tgactccgcc tctcacgccc       240
     gccacacaca ctcagtcgna tcgaaacccg cgtgtattac acgttacatg cgcttgtgcc       300
     gcttgntgag taaaacgcag tgattgccga tantaatatt tcaacctacc taatgncatc       360
     tcaaaagaaa acagaaccca aaaaaagaaa aatcgtggat gaaggaagag tgttcaacga       420
     aaaatggaca gatgagtact tttttgtcaa gacaaataat atggcactat gcttaatttg       480
     caaggaaatc gtgtcagttt tcaaagatta caatttgaaa agacattata tgcagaaaca       540
     tgctgccaaa ttcgatgcat atcaaggaat gcttcgtaaa gacaaaatag cggaactgaa       600
     aaaaagtctg tcatctcaac aaaatctttt tnaaaaagtt aaaactcaaa cggactctgt       660
     tataaaagct agttacgtgg tagcaaatct gattgcaaaa aaatcaaaac catttactga       720
     tggtgagttt attaagcaat gtatggaaag catggcagat ataatgtgtc ctgataaaaa       780
     aaaaacggat ttttctaaaa tcagtttgtc tcaccagact gtagccaggc gaactgaaga       840
     aacaggaaaa tctatcgaaa gaaatttgga gagtaaagct gctaatttca aattttatgc       900
     tttggcgata gatgaaagta ctgatgctac agatacggct caacttgcca ttttcattag       960
     aggtattgat aacgaatata atgtcactga agaaatggct tctttggtgc cattaaaaga      1020
     cacaactaaa tctcttgatt tgtatgaagc agtaaaaant acattaaagc gattttcttt      1080
     aacctttgtc aacatatctg gtatagctac tgatggcgcc ccggcgatgg ttggtaaaaa      1140
     agagggactt ataaaattaa tagaagatga tgcaattgcc accggcaact cacgtttgat      1200
     gaaatatcac tgcatcgtac atcaagaaaa tttatgtgcg aaagctttaa aaatggataa      1260
     tgtcatgcaa atcgtcatca aagctgtgaa tttcataaag tccaagggac tgaatcatcg      1320
     ccagttccag gagttcctta aaagtatgga tgctgattat ggggacatca tttacttttc      1380
     tgaaggaagg tggctaagtc ggggtaaaat gctaaaaaga ttttatgatt tgcgaaatga      1440
     aatcaagtcn tttatggaat caaaaggaaa atttgtgcca gaacntgaag atnaaaaatg      1500
     gctcacagat ttagcatttt tggtggattt gaccgctcat ttaaatgagt taaacatgcg      1560
     tcttcaaggt gaaaatcaac ttatctgtgc tatgtttcaa accataacag cgttcgaaat      1620
     gaaacttaaa ttatggcaag ctcaagttat ggcaaataat ttcatgcatt ttgatacgtt      1680
     ggctaaacac agtcctgtga acagcgaaaa atatgcagcc gtgctttccg ttttgataaa      1740
     ggaatttgag aataggtttc aagatttccg aaaaaatcat cnattttttt gtatatttgc      1800
     gactccattt tcagtcgaca taaatacatt acctgcgaat tttcaaatgg aatgtataga      1860
     gttgcaatca gacattcaac tcaaagaaaa atttgatcat gtctctttac cagactttta      1920
     taagacctnt cttaccagag aaaaatatcc ctcgcttcac aatcacgcct tattcatgtc      1980
     atcgcttttt ggcagtacgt acatttgtga acaactgttt tcaaggatga agcacaggaa      2040
     gagtaanatt tcatcaaaaa tctctgacga acaccttgag aactcactaa gaattgcaac      2100
     cactnccatc gaaccagact gatgcattag tttcacaaaa acaaggtcaa atatcccact      2160
     agttttatgt ttttgttgct ctctgttttt tatgttttaa taaaaaatac attaaaaata      2220
     agttttgtta cttatataca ttaactatat tatatatttt atatgcggcc caagacaatt      2280
     cctcttcact cagtgcggcc caggcaagcc aaaaggttgg acacccatg                  2329
//
ID   HPAI        repbase; DNA   ; VRT   ; 211 BP.
XX
AC   .
XX
DT   20-JUL-1999 (Rel. 4.06, Created)
DT   20-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   SINE repetitive family from Oncorynhus - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; HPAI;
KW   Hpa I repetitive sequence.
XX
OS   Oncorhynchus nerka
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus.
XX
RN   [1]
RA   Kido Y., Aono M., Yamaki T., Matsumoto K., Murata S.,
RA   Saneyoshi M., Okada N.;
RT   "Shaping and reshaping of salmonid genomes by amplification of
RT   tRNA-derived retroposons during evolution.";
RL   Proc. Natl. Acad. Sci. U.S.A 88(6), 2326-2330 (1991).
XX
RN   [2]
RA   Murata S., Takasaki N., Saitoh M., Okada N.;
RT   "Determination of the phylogenetic relationships among Pacific
RT   salmonids using short interspersed elements (SINEs) as temporal
RT   landmarks of evolution.";
RL   Proc.Natl.Acad.Sci. USA 90, 6995-6999 (1993).
XX
RN   [3]
RP   1-211
RA   Jurka J.;
RT   "HPAI.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 211 BP; 69 A; 41 C; 49 G; 51 T; 1 other;
     caattggggc ggcagggtag cctagtggtt agagcgttgg actagtaacc ggaaggttgc        60
     aagttcaaay ccccgagctg acaaggtaca aatctgtcgt tctgcccctg aacaggcagt       120
     taacccactg ttcctaggcc gtcattgaaa ataagaattt gttcttaact gacttgccta       180
     gttaaataaa ggtaaaataa aaaataaaaa a                                      211
//
ID   FPREP1      repbase; DNA   ; VRT   ; 371 BP.
XX
AC   Z34301;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Repetitive DNA.
XX
KW   FPREP1; Repeat region; Repetitive DNA.
XX
OS   Falco peregrinus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco.
XX
RN   [1]
RP   1-371
RA   Keyser C.C., Montagnon M.D.;
RT   "Cloning of HaeIII restriction fragment from peregrine falcon
RT   genome.";
RL   Unpublished.
XX
RN   [2]
RP   1-371
RA   Keyser K.C.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (13-JUN-1994). CHRISTINE
RL   KC KEYSER, Institut de Medecine Legale, 11, rue Humann,
RL   STRASBOURG, FRANCE.
XX
DR   GenBank; Z34301; Positions       1     371.
XX
SQ   Sequence 371 BP; 119 A; 76 C; 91 G; 85 T; 0 other;
     ggccaaggca tttctgatgg ggagatcaag atgtgaaaaa aaataatata tatatatatc        60
     tgggaagaag ggaaaaaaaa aaagagatag ttgggaatgc cacaggaaag gagttaaatc       120
     ttcagagata aattaattcc acatgtgggt gaaagcaaag ttatcctact actactacaa       180
     aaagtccctc tataaaccat gcagtcttct attctcattc aaggggatgt gcagtccaag       240
     caacccttcc tagatcctgg tgggctttag ggtcaactgc tgcctgcaca gcaccaccac       300
     cctgctggga ggtgcctgtg tcacccccgg atacaaccag tggcttggca tggatggatg       360
     gatggaaggc c                                                            371
//
ID   TXZ19       repbase; DNA   ; VRT   ; 1604 BP.
XX
AC   U43661;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Xenopus laevis transposon TXz.19 transposase pseudogene, partial
DE   cds.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; TIRs; TXZ19;
KW   Tc1-like transposon.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-1604
RA   Lam L.W., Seo P., Robison K., Virk S., Gilbert W.;
RT   "Discovery of amphibian Tc1-like transposon families.";
RL   J. Mol. Biol 257(2), 359-366 (1996).
XX
RN   [2]
RP   1-1604
RA   Lam L.W.;
RT   "TXZ19.";
RL   Direct Submission to Genbank (20-1995)Wan L. Lam, Molecular and
RL   Cellular Biology, Harvard University, 16 Divinity Ave.,
RL   Cambridge, MA 02138, USA.
XX
DR   GenBank; U43661; Positions       1    1604.
XX
CC   Tc1-like DNA transposon; 29 bp terminal inverted repeats.
CC   Internal portion 722-1188 can be an external insertion.
XX
SQ   Sequence 1604 BP; 571 A; 300 C; 334 G; 399 T; 0 other;
     caggggttta acagtaattg gaccattgac tcaaaggtgt gggcaattcc tttgttatgt        60
     cattatcaat gaagaaaata aaagccctga agttgatttg aggggaaaaa acccatccaa       120
     gaaattgcta caatattagt ggcaaaatct acagtttggt acatcctgag agagaaagaa       180
     atcacttatg aattcagcaa cgcaaaaaga gctgaacgtc catggaaaac aacagtggtg       240
     gatgatcaca gaatactttc catggtgaat agaaacccct tcacaacagc caaataagtg       300
     gaacaacact ctccaggagg taagcgtatt gatatccagg tctactataa cgagaagact       360
     gtagaaagta aatacagagg gtgcatataa ggtgcaagcc actcataaga atcaagaata       420
     gaaaggctag attggacttt gctaaaaaac acctaaaaaa gccagcacag ttctggaaaa       480
     acattctttg gacagatgaa accaagatca agctctacca gaatgatggc aagaaaaaag       540
     tatggagaag ccgtggaaca gctcatgatc caaaacacac cacatcatct aataaaacat       600
     ttgggaggca gtgtgaaggc ttgggggtgc atggccgcca gtggcactgg gacactagtg       660
     tttatccatg atgtgacaca ggacagaagc agccaaatga attatgagct gttcagagac       720
     atagggggga attcacaaaa gtgccggtaa aataagtaac ccagaagtgg cggtcgacaa       780
     atttgtaaaa tgtcgtacga acggcaaatt cacaaaggca gatgttacca tctctgaatg       840
     tctcgtaagt ctgtcaattt tctaaaatgt cgtatatctt ttcatcgtac aaacgacatt       900
     taccaagact ttttaaaaga caatttggac tgacattttc agtgttggag agcctaaagt       960
     gtctgaaaaa ttgtcggtaa aaaaaatgaa tttacgagta attcataaaa tgtcaggaaa      1020
     agtggcgccg aaaaagccac gcccactttt aacaactcta attcaaaaat gttgtacatg      1080
     tcggaaaatt ggcggagaaa tgctctgtga atttgtcggc tgttgctacg acactttcta      1140
     cgaaatttta aagacatttt ttcgttcccc gacacatttg tgaaagtact gtctgctcaa      1200
     atccagctag atgcagtcaa attgattggg agatatttca taatacagat ggacaatgac      1260
     ccaaaacatt cagccaaagc aacccaggag tttattaaag caaagaagtg gaatgttctt      1320
     gaatatccaa gtcagtcacc tgatctgaac ccaattgagc tgcatttcac ttgttgaaga      1380
     ctaaacctcg gacagaaagg cccacaaaca aacagcaact gaaagccgct gcagtaaaga      1440
     cctggcagag cattgaaaag gtgaaaaaac agaatctggt gatgtccatg agttcaagac      1500
     tgtcattcaa gctgtcattg ccagctaacg gttttcatct aagtattaga aataaacatt      1560
     ttattttaat ttttttcatt tgtccaatta ctgttaaacc cctg                       1604
//
ID   XL1723L     repbase; DNA   ; VRT   ; 500 BP.
XX
AC   X00078;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   DNA transposon 1723; left part.
XX
KW   hAT; DNA transposon; Interspersed Repeat; DNA transposon 1723;
KW   hAT superfamily; XL1723L; left part.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-500
RA   Kay K.B., Dawid B.I.;
RT   "The 1723 element: a long, homogeneous, highly repeated DNA unit
RT   interspersed in the genome of Xenopus laevis.";
RL   J. Mol. Biol 170(3), 583-596 (1983).
XX
DR   GenBank; X00078; Positions      15     514.
XX
CC   Left part of DNA transposon 1723.
CC   1723 transposon is flanked by 8 bp target site duplications and
CC   its TIRs are similar to the Ac and Ds1 transposons (HAT
CC   superfamily).
CC   Internal and right parts of the 1723 transposon are listed as
CC   XL1723I
CC   and XL1723R.
XX
SQ   Sequence 500 BP; 142 A; 86 C; 140 G; 132 T; 0 other;
     tagggatgta gcgaacgtcg gaaaaaaagt tcgcgaacat tgcgcaaaaa atgcgagtgg        60
     ttcgcgaacg gttcgcgaac cccatagact tcaatgggaa ggcgaacttt aacatctaga       120
     aaagacattt ctggccagaa aaatgatttt taaagttgtt taaagggtgc aaacgacctg       180
     gacagtggca tgccagaggg ggatcaaggg caaaaatgta tctgaaaaat ctgcctgtgt       240
     gtgcttggaa gagatagtgt agggggagag ctgttagtga tttcagggac agatgataga       300
     aagcttgctg gctagtaatc tgcttgatac tgctctgtat tggagggaca gaagtctgca       360
     gggatttgag ggacatttta gcttaggtag ctttgctggc tagtaatcta ctgttctctt       420
     taaacaactg ccatacgttg accttgtagg ccattgtttg ccagtttttt tggacgcagc       480
     cactgaagca cagttgccag                                                   500
//
ID   PIR_XL      repbase; DNA   ; VRT   ; 451 BP.
XX
AC   X61284;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   X.laevis interspersed repeat.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous;
KW   nonautonomous DNA transposon; PIR_XL; T2-group; TIRs.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-451
RA   Morgan G.;
RT   "PIR_XL.";
RL   Direct Submission to Genbank (23-JUL-1991)G. Morgan, University
RL   of Nottingham, Dept of Genetics, School of Biological Sciences,
RL   Queens Medical Centre Notttingham, NG7 2UH, UK.
XX
RN   [2]
RP   1-451
RA   Rabbitts G.K., Morgan T.G.;
RT   "Alternative 3' processing of Xenopus alpha-tubulin mRNAs;
RT   efficient use of a CAUAAA polyadenylation signal.";
RL   Nucleic Acids Res 20(12), 2947-2953 (1992).
XX
RN   [3]
RP   1-451
RA   Unsal K., Morgan T.G.;
RT   "A novel group of families of short interspersed repetitive
RT   elements (SINEs) in Xenopus: evidence of a specific target site
RT   for DNA-mediated transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248, 812-823 (1995).
XX
DR   GenBank; X61284; Positions     695    1145.
XX
CC   Nonautonomous DNA transposon; 19 bp TIRs (TTAAAGGRR...); belongs
CC   to
CC   the T2-group [3]. TTAA target site.
XX
SQ   Sequence 451 BP; 132 A; 80 C; 107 G; 132 T; 0 other;
     ttaagagaag gaaagctaca gtcattttat tgccaataga ttagctgcaa tagtgcaagc        60
     tataatgcaa tatttattct gtagaatgtt ttaccatact tgagtaaaaa gttctagaag       120
     tgctctgttt gtttaggata gccgctgtag tattagtttg ctgtgacatc ccttactgcc       180
     tgagtctctc cctgctcact tatagctctg aactcagatt acatcagaga agggaggggg       240
     gaagaggagc aaactgagca tgctctacgc ccagggcaag gaggtttaag ctgaaggcag       300
     gaagtctgat acagaagccc atgtgtacac aatagaagga aagaaatgca gtgtttcttt       360
     tgacagagga ctactatgag ggtttaccgg tatatgtagg tggacctttc tgataaggct       420
     tacttagatt taaccttgcc tactccttta a                                      451
//
ID   LINE2_VP1   repbase; DNA   ; VRT   ; 662 BP.
XX
AC   .
XX
DT   28-MAR-2002 (Rel. 7.02, Created)
DT   28-MAR-2002 (Rel. 7.02, Last updated, Version 1)
XX
DE   Vipera palaestinae non-LTR retrotransposon LINE2 reverse
DE   transcriptase pseudogene - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; LINE;
KW   LINE2_VP1; retrotransposon.
XX
OS   Vipera palaestinae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Viperidae; Viperinae; Vipera.
XX
RN   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol 18(12), 2213-2224 (2001).
XX
RN   [2]
RP   1-662
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_VP1: non-LTR retrotransposon LINE2 reverse transcriptase
RT   pseudogene from Vipera palaestinae.";
RL   Direct Submission to Repbase Update (12-MAR-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 662 BP; 119 A; 173 C; 183 G; 174 T; 13 other;
     tagacctctc agcggcgttc gataccatcg accatggtat cctgctgcgg catctcaggg        60
     ggattgggag tgggvagcac agttttdcag tggttctcct cctatctcct gggacgbtcg       120
     cagtcggtgt tggcaggggg gcagaggtcg accncangnt cdtttgtgga gttcctcagg       180
     ggtcggtcct ctcgcchctt ctgttcaaca tctatatgaa accgctgggt gagatcattc       240
     gtggtttgga gttgagtatc atcagtatgc tgatgatacc cavcttttta ttttgacccc       300
     aaaccacccc agtaatgccc gacgtgatgt cccvttgcct gagcggttcg ggtctgatgg       360
     ggaagaacag acttcaactc aaccctgaca agactgagtg gttgtgcatt ccggcatccc       420
     gggacattca gaatatccca ctctttctat gtggggtgag tttttacccc ctgtagatag       480
     ggctcgcaac ttgggtgtcc tcctagattc acggcttact ttggaagabc abatggtggc       540
     cgtgactagg ggggccttcg cccaggttcg cctggtgcgc cagttgcggc cctatctdga       600
     ccgggatgcc ctgtgtacgg tcactcatgc gctcgtgacc tcacgcctgg actattgcaa       660
     ta                                                                      662
//
ID   GGLTR3E3_LTR repbase; DNA   ; VRT   ; 550 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; GGLTR3E3_LTR;
KW   Kronos_LTR; LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-550
RA   Smit A.F.;
RT   "GGLTR3E3_LTR - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000047; 5 bp dups; 8% subst.
XX
SQ   Sequence 550 BP; 116 A; 140 C; 116 G; 178 T; 0 other;
     tgtcatggtt ttataatttt gttatcggta ttccacatca taacatcatg taaagcacgg        60
     gtaattaaag agttaatact ccagttccgt ggactgacaa ctttccggat acctggttct       120
     cagaagagaa gaactacata tcccagggga cttcacgttc agagaggaag ataagccacg       180
     ggaggaagtc acgggatctc gctctctggc tctctctcgc tcgctgcctg gcagtgtgtg       240
     ggtgtgctcc ccagccgtgc gccttcagtt caaagtaggc ctttcggttt cggacactct       300
     ctctcttatt ttatttgatt tattagcctc aatttcaatt atattgtatt atattgtgtt       360
     atcttgcatt ccgatatcat atttagtaaa attaagtttt cctccttaga tcgttgccgc       420
     tgttctgttt ttgggcccag ctcccatctc cctacccttc cccttttccc ttcccatttt       480
     ggggccaggg ggcctacggg cctgctgccc cctgtcacgg gcacagattg atctagataa       540
     ctccgtgaca                                                              550
//
ID   XIR_XM      repbase; DNA   ; VRT   ; 264 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Xiphophorus maculatus XIR-like repeat region (Rex3
DE   retrotransposon).
XX
KW   LTR Retrotransposon; Interspersed Repeat; LTR repeat element;
KW   Rex3 retrotransposon; XIR_XM.
XX
OS   Xiphophorus maculatus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Cyprinodontiformes; Poeciliidae; Xiphophorus.
XX
RN   [1]
RA   Nanda I., Volff N.J., Weis S., Koerting C., Froschauer A.,
RA   Schmid M., Schartl M.;
RT   "Amplification of a long terminal repeat-like element on the Y
RT   chromosome of the platyfish, Xiphophorus maculatus.";
RL   Chromosoma 109(3), 173-180 (2000).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of X. maculatus XIR-like repeat (Rex3).";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 93%. XIR_XM is a potential
CC   retrotransposon (Rex3) that shows similarity to X-ray
CC   inducible retrotransposon from Fundulus heteroclitus.
XX
SQ   Sequence 264 BP; 80 A; 60 C; 52 G; 71 T; 1 other;
     ggtcaaagtt cacctactcg ccatgaaaca naaaactctt atatttccta tacaaaaaca        60
     catagaggga ccaaactttc agtgattgat cgacatcggg tgtcctacaa taccctatgg       120
     tcaaatgatg acattactta gccacgcccc ctgagaacag gaagtgtcat gttttactgt       180
     gaacggtcgc tatcttagcc ctttgaccta atcaacatga aactgtgtcc agagacagaa       240
     gacatgttgg tgtgttgtgg attc                                              264
//
ID   HOPPER2_MM  repbase; DNA   ; VRT   ; 1593 BP.
XX
AC   AF541950;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Mycteroperca microlepis transposon hopper2 sequence.
XX
KW   DNA transposon; Interspersed Repeat; HOPPER2_MM;
KW   probable DNA transposon.
XX
OS   Mycteroperca microlepis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Percoidei; Serranidae; Epinephelinae; Mycteroperca.
XX
RN   [1]
RA   Kaminker S.J., Bergman M.C., Kronmiller B., Carlson J., Lewis S.,
RA   Rubin M.G., Ashburner M., Celniker E.S.;
RT   "Direct Submission to Genbank.";
RL   Direct Submission to Genbank (29-AUG-2002)MCB, UC Berkeley,
RL   Berkeley, CA 94720, USA.
XX
DR   Genbank; AF541950; Positions       1    1593.
XX
CC   Vertebrate repetitive element with 88% similarity to
CC   Drosophila melanogaster transposon hopper2.
XX
SQ   Sequence 1593 BP; 507 A; 301 C; 250 G; 535 T; 0 other;
     ataaaagtta aaagtttcta aagttaattt tcaatattaa tattgtctaa aatttcatag        60
     tcgtcttcct cttcacaatc agcagagtct gaagaatcgt tatcaggttc gaaagctaac       120
     atttgaatga cttctgggga aagaggcagt cgcttatgtt tttgaacgcg cctccttaaa       180
     ttaattgatt atattatggg atccgaagta tcctttgctc tgtgaaagag atctgcgaag       240
     ctacaaatac gattatgctt tcttgaatgg tgaagtctgt ccgacttgta aattttattc       300
     ctagattctg ctgcctcttc tccaaaatag tcgaactgtt tgctccaaga tatttttgaa       360
     gtgaaccaat attttgtgga ctgtcgctgt catgggaagc catggatatt tgtcaacaat       420
     aatttgtgca gttgtatgac aaagctgctc atatttttca aggtctatag gtaatagaca       480
     tgacagacat attaatattg tcctcatatt aaaaatgagc tggatgtcaa cgcctgttat       540
     ttcggaaaat gccttatagt tattaaatgc acgacgcgcc gtattgtcaa cattagaact       600
     accgaatccg ccttgttttg gttgatcaac cttaagcgat agtttttccc aaaacattcg       660
     ctgggtgcat ttttttcgct ctaactccat atttttttat caattccacc cacgattctc       720
     cactttttta ctacagtttt gtaccccata tttggtacaa acgccgaaaa tctacaatct       780
     tccaacaagg aagtggactt aatccatatt ttaaatttcc ttgaatttcc ttcttttacc       840
     ttaaggagta ggtgttcttc taaccacttt gaataaactt tcgaaaattc gtttaatttc       900
     gatagcattt tctcaaattt cggaaaagat ttactgaaaa cattctcgca ttttccttta       960
     ggtatcgttc attaaagtct agcttgctat cagaaaaatg cccactgata aaagtgtaaa      1020
     aagtattttc cttttgacga aaaccctttt gcttgcgcca cacttccagc aggtcagcac      1080
     tggcaatcga gatattgctt cctaaaacat aatatttctc aaaaaaccgc aaacgcacat      1140
     agagactaca tgatatgagc taagaattga acacactaca acatggatat aaacacttac      1200
     tgaacaaatt tgaacaaatt gttgtagctc tcttcaaagt tgcaattttt ttcaaacagc      1260
     tacatgtgga catcacttgc taaatgtaca aatagttagt agtagacgca cacaataaac      1320
     aatatattaa caggaacaca taatacaaac ctgaagattg attatccatt tcaaattata      1380
     ctcttttgcg atcttctttt taatttctaa cactttgaaa gttaagctaa atgcagccac      1440
     gtggtatgtg ctcgcaacag ctgaaattaa cagctgttat tataatggtg cgctgttaaa      1500
     ttaacttttg cgggctgaaa cataacagtt tagagtattt ccaatatatt aatactaaaa      1560
     tactgcaaat ttgcatactt gtgaaaaaac aca                                   1593
//
ID   GGLTR7A_LTR repbase; DNA   ; VRT   ; 610 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from chicken.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-610
RA   Smit A.F.;
RT   "GGLTR7A_LTR - ERV1 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000005   4% subst cut  general.
XX
SQ   Sequence 610 BP; 182 A; 127 C; 170 G; 131 T; 0 other;
     tgaagagtga gaacaggacc ctgcagttat agagagaagg gcctcacagc aagaaaaggg        60
     aaagtagctt cacaaagtag aaataagggg caaatagaga tagtttaggt agagagtgtt       120
     agaaaacaag ggattccaag cactttcaca gacactaggt ctggaataac aaggaggatg       180
     aaggccataa agataaggac tggagagcag ctcgaaaaca tttggcaggg aggtgattag       240
     atgtctacag ggcaagctga aaccggttcg ggggatgccc ccccttcggg gtcagaagtt       300
     tgcagcgagg aagactacga gccttcgcga ggaagactac gagccttcat catcacgacc       360
     tactacgcac gcgcaagggg gggagggact gcatgctaat gggctctcgg gaatgtaatg       420
     aatatgtatc cgaattcctg tcaactattg attatgtatt agttcgacct atatctatag       480
     cacgatttct cctgacggtg tgcaagttag gtggagcgat cccccttgca ccagggtgta       540
     cgcgcgtcac caataaacac atgcctgctc tatatcctta ctggctatag ggtctgattt       600
     ccgcacgtca                                                              610
//
ID   PVSAT       repbase; DNA   ; VRT   ; 203 BP.
XX
AC   M59973;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Pollachius virens satellite DNA, clone alpha-pol 5.
XX
KW   SAT; Satellite; Simple Repeat; PVSAT;
KW   Satellite repetitive element.
XX
OS   Pollachius virens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Paracanthopterygii; Gadiformes; Gadidae;
OC   Pollachius.
XX
RN   [1]
RP   1-203
RA   Denovan M.E., Wright M.J.;
RT   "A satellite DNA family from pollock (Pollachius virens).";
RL   Gene 87, 279-283 (1990).
XX
DR   GenBank; M59973; Positions       1     203.
XX
SQ   Sequence 203 BP; 62 A; 39 C; 33 G; 69 T; 0 other;
     gaattccatt cgttttgaac aatatcaaca ttcgtttggt cagattcaag tttttggtca        60
     aaaatgtgcg cttctctacg ctctgaaaag cattttgcac acatacaaaa actggaagag       120
     ttgatatttc tgttcctttc aattcaaccg tgttattaat gcttacaaaa gggttatttc       180
     agcacaaacc accatttgga agt                                               203
//
ID   TANS        repbase; DNA   ; VRT   ; 221 BP.
XX
AC   .
XX
DT   22-JUL-1999 (Rel. 4.06, Created)
DT   22-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Genomic DNA short tandem repeat sequence - a consensus.
XX
KW   Satellite; Simple Repeat; TANS; tandem repeat.
XX
OS   Hydromantes genei
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Caudata; Salamandroidea; Plethodontidae;
OC   Plethodontinae; Bolitoglossini; Hydromantes.
XX
RN   [1]
RA   Batistoni R.;
RT   "TANS.";
RL   Direct Submission to Repbase Update (15-MAR-1994)R. Batistoni,
RL   Dipt di Fisiologia e Biochimica, Via Carducci 13, 56010 Ghezzano,
RL   Pisa, ITALY.
XX
RN   [2]
RA   Batistoni R., Pesole G., Marracci S., Nardi I.;
RT   "A tandemly repeated DNA family originated from SINE-related
RT   elements in the European plethodontid salamanders (Amphibia,
RT   Urodela).";
RL   J. Mol. Evol 40(6), 608-615 (1995).
XX
RN   [3]
RP   1-221
RA   Jurka J.;
RT   "TANS.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 221 BP; 47 A; 69 C; 44 G; 60 T; 1 other;
     aagctttccc cttcaattgc tctaccttct kggtaccact acccagtgcc acatagacat        60
     ttgacgaaca ctgctgctgg ctggtccact ctttgcccgc tttgcaacca gagttcaagc       120
     tgcactttcg tcatattcgc tgatgaccct ttccggccaa aaatccttgt agggtgacgg       180
     gtccaacaaa cactgtgctg ctgctgcctg ctgctgcaaa a                           221
//
ID   OM2         repbase; DNA   ; VRT   ; 227 BP.
XX
AC   X59354;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   O.masou DNA for repetitive Hpa 1 family, om2.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; OM2; OMOM2;
KW   Repetitive sequence.
XX
OS   Oncorhynchus masou
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus.
XX
RN   [1]
RP   1-227
RA   Koishi R., Okada N.;
RT   "Distribution of the Salmonid Hpa 1 Family in the Salmonid
RT   Species Demonstrated by in Vitro Runoff Transcription Assay of
RT   Total Genomic DNA: A Procedure to Estimate Repetitive Frequency
RT   and Sequence Divergence of a Certain Repetitive with a Few known
RT   Sequences.";
RL   J. Mol. Evol 32, 43-52 (1991).
XX
DR   GenBank; X59354; Positions       1     227.
XX
SQ   Sequence 227 BP; 69 A; 41 C; 51 G; 66 T; 0 other;
     tagtattggg cggcagggta gcctagtggt tagagcattg gactagtaac cgcaaggttg        60
     taagttcaaa cccctgagct gacaaggtat aaatctgtcg ttctgcccct gaacaggcag       120
     ttaacccact gttactaggc tgtcattgaa agtaagagtt tgttcttaac tgacttgcct       180
     agttaaataa aggtaaaata aaaaatagta ccttcagtat tctttaa                     227
//
ID   CR1-Y3      repbase; DNA   ; VRT   ; 1216 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   CR1 Non-LTR Retrotransposon from chicken.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-1216
RA   Smit A.F.;
RT   "CR1-Y3 - CR1 Non-LTR Retrotransposon from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1216 BP; 296 A; 251 C; 392 G; 276 T; 1 other;
     agccttctat gatgtcatca ctggctgggt agatgggggg agagcagtgg atgttgtgta        60
     ccttgacttc agcaaggcgt ttgacaccgt ctcccacaac atccttgtta tgaaacttag       120
     aaagtgtggg atagatgagt ggacggtgag gtggattgag aactggctga ctggcagagc       180
     tcagagggtt gtcatcagcg gcgcagagtc tggttggagg cctgtaacta gcggtgttcc       240
     ccaggggtcg gtgctgggtc cggtcttgtt caacatcttc atcagcgacc tggatgaagg       300
     gatagagtcc accctcagca agtttgctga tgatacaaag ctgggaggag tggctgacac       360
     accggaaggc tgtgctacca ttcaacaaga cctggacaga ctggagagtt gggcagggag       420
     gaacctgatg aggtttaaca agagcaagtg tagagtcttg cacctgggga ggaataaccg       480
     catgcatcag tacaggttag gggatgacct gctggagagg agctctgcgg agaaggacct       540
     gggggtcctg gtggacaaca ggttggccat gagccagcag tgtgcccttg tggccaagaa       600
     ggccaatggt atcctggggt gcattaaaaa gagcgtggcc agcaggtcga gggaggtgat       660
     cctccccctc tactctgccc tggtgaggcc acatttagan tactgtgtcc agttctgggc       720
     tccccagttc aaaaaagaca gggatctcct agaaggagtc cagcggaggg ccacaaagat       780
     gataaagggc ctggagcatc tcccgtatga ggaaaggctg agtaacctgg gtctgttcag       840
     cctggggaaa agaagactga gaggggatct gataaatgtt tataaatatc taaagggagg       900
     tgggaggcaa atggatgagg ccaggctctt ctcggtggtg tgtagcgata ggacaaggag       960
     taatggccta aaacttgaac ataggaagtt ccgtactaac atgcggaaga acttctttac      1020
     ggtaagggtg acggagcact ggaacaggtt gcccagagag gttgtggagt ctccttctat      1080
     ggagatattc aagacccgtc tggacgccta cctgtgcgac ctattgtagg gtacctgctt      1140
     tagcaggggg gttggactcg atgatctctt gaggtccctt ccaacccctg cgattctgtg      1200
     attctgtgat tctgtg                                                      1216
//
ID   MAUI        repbase; DNA   ; VRT   ; 4804 BP.
XX
AC   .
XX
DT   08-FEB-2002 (Rel. 7.01, Created)
DT   08-FEB-2002 (Rel. 7.01, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon; CR1 superfamily; L2 family; MAUI.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   CR1 superfamily; L2 family; MAUI.
XX
OS   Takifugu rubripes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Tetraodontiformes;
OC   Tetradontoidea; Tetraodontidae; Takifugu.
XX
RN   [1]
RP   1-4585
RA   Poulter R., Butler M., Ormandy J.;
RT   "A LINE element from the pufferfish (fugu) Fugu rubripes which
RT   shows similarity to the CR1 family of non-LTR
RT   retrotransposons..";
RL   Gene 227(2), 169-179 (1999).
XX
RN   [2]
RP   1-4585
RA   Poulter T.R., Butler I.M., Ormandy J.;
RT   "MAUI..";
RL   Direct Submission to Repbase Update (24-AUG-1998)Biochemistry,
RL   University of Otago, Cumberland Street, Dunedin, New Zealand.
XX
RN   [3]
RA   Smit A.F.;
RT   "Initial survey of interspersed repeats in Takifugu rubripes..";
RL   Direct Submission to Repbase Update (28-NOV-2001).
XX
CC   [3] (Consensus)
XX
CC   MAUI is the most numerous repeat in Fugu (>6500 copies),
CC   belonging
CC   to the L2 class of LINE-like elements [1]
CC   Consensus [3] contains a full-length gag (pos 191-1078) and pol
CC   (pos 1100-4186) open reading frames. 242 bp fragment of the 3'
CC   UTR
CC   (pos 4351-4592) added to previous sequence [2].
XX
SQ   Sequence 4804 BP; 1228 A; 1156 C; 1015 G; 1383 T; 22 other;
     ggcttccgtt gggtaacgta ttgcgtcact tcctgtcttc tcaatcgttc gttggttgca        60
     ctgtgcacgg tgtgttgtat tcactttact taaaatttga acacttggga cattctagtc       120
     acctgataac aacagtgaga aataacccat attaaacaaa tacagggctc cgccgattat       180
     tagcattagc atggcctcac cgtctgtttc acccggtgtc tcaccctgtg tctgttcagc       240
     gtgtgaaatg tttagttact cctctgcctc ctttagtgaa gggaataggt gcagaaagtg       300
     tagtttattt atggctctgg aggcgagact tagtgagctt gagacgcggt tccgcagctt       360
     ggagttgnct ggagttgcgt caggtagcca ggagaaggta gctgctgcgg agctgcctag       420
     cgtagctaca gctagctgtc ccccggcagc agccgagcag ccggctagcc agggcggctg       480
     ggtgacggtt cgcaggaagc gtagcccaaa ccaaaggccc acggtgcacc accaaccgct       540
     tcccgtggct aaccgttttt ccccactcgg cgacacaccc gctgagaaac cgaccctggt       600
     aattggcgac tctgttttgc gctacgtgaa gccgactcca gcgaccatag ttaggtgcat       660
     tccgggggcc agagcgggcg acatagaagc caatctaaag ctgctggcga gaagtaaacg       720
     taaattcggt aaagttatta ttcacgtcgg agcaaacgac acccggcttc gtcagtcgga       780
     ggtcaccaaa attaacatag agtcggtgtg caactacgca aaaacgatgt cggactccgt       840
     agcattctct ggtcccctcc ccaatctggc cagcgatgaa atgtttagtc gcatgtcgtc       900
     gcttcgtcgc tggctgtcac ggtggtgccc cgaaaaccag gtgtcctttg tagacaattg       960
     gaacagtttt tggggaaaac ctggtctgat taggagagac ggtgtccatc ccacccggga      1020
     tggtgcctct ctcatttcta gtaacttggc caattttatt ngacccaaag tgacctgaca      1080
     aaccagggtc cagaccagga tgcagagttg tagtcttaca cacctctctg ctgcttccgt      1140
     agaaccctca tccaccaaca ataacatatt taacactata gaggtagtct ctgttccacg      1200
     gttaaaagtt caccaagcac agagcagggg agcggtcaat caccataatc ttattaaaat      1260
     taataccaaa gcacaagtag gagaaactaa tagcacaatt aaatgtggac tgttaaatat      1320
     tagatctctt ttgtgtaaat ccctgttagt gcacgacctg atagcngatc atcacattga      1380
     tttattttgt cttactgaga cctggcttca ggaggaggag tatgttagct taaatgaatc      1440
     tactcctcct acccatctta attatcatat tcctcgtgtt actggtcgag gagggggagt      1500
     ggcagcaatc tatcactcca agttattaat taatcctaga cccaaacatg gctccagttc      1560
     atttgaaagc ctgactcttg gcatcaccca tctgaactgg aggacagaaa agccacttct      1620
     gtttgtagtt gtatatcggc cccctgctgg gccacattca gagttcctgt ctgagttctc      1680
     tgacttctta tctgacttgg tcctcagaac agataaagtc attattattg gagactttaa      1740
     catccatgta gacgttgtaa atgacagctt tagaaatggc ttcatttcat tacttgagtc      1800
     agttggtttc cttcaacaga taaaccaacc aactcatagc ttcaaccaca cccttgatct      1860
     agttctgact tatggtgttg aggtagaaca tgtgtcagtg ttccctcaga acccactcct      1920
     gtcagatcat tctttgatca cttttacatt tatgattaag gattcttcta tgttcagaac      1980
     acagtcttac tacagcagat gtctctcaga taatgctgta gctaagttta aggaagtgat      2040
     ccctgtgtta attccgggac caccgtgtgt ttntncaggg ancagtcatt ataatcttag      2100
     ccctgctgag gtcgactcta ttgctgaagg tgcagcagcc tcactgngaa tcacgcttga      2160
     ttctgttgcc cccctgaaaa agaaaatagt aaatcagagg aggtgtgccc cctggtataa      2220
     ttcgcacatt aggaccctca agcagaaagc gcgaagacta gaaaggaagt ggtattcttg      2280
     taaaatagan agctaccatt tagcctggaa agactgtctg gtagcttaca aaaaggccct      2340
     ccgtaaggct agaacngcct atttttcttc tttaattgaa gaaaaccaga acaaccccag      2400
     gtttcttttc agcactgtgg ccaaattaac caagagtcac agtgttttag atccacgtat      2460
     cccttcttcc cttagtggtg aagacttcat gagcttcttc actgataaag ttataactat      2520
     tagagaaaaa gctaatcagg ccatcccaac agctgctaga ccatcaccag atgtgctgac      2580
     tgtgggaaca tacagggtct ccaacgagcc cttaaactcc tttancccta tatatttttc      2640
     tgagacgtcn tcgttaattc agaaatccaa gtccaccacg tgtcttttag atcccatccc      2700
     aacacacctg ttgaaggatg ttttaccant gataggcagc tctatcctgg accagatcaa      2760
     ttgttcttta gcgacaggtt atgtaccccg gtcctacaag gtggcagtga ttaaaccgtt      2820
     gcttaaaaaa ccatcactgg atcctgatgt gttagcaaat tataggccna tatccaacct      2880
     tccttttatc tctaaaattc ttgagaaggt ggtggtgact cagttactgg accacctgca      2940
     gaggaacagc ctgtttgaga tgtttcagtc aggttttaga gctcatcaca gcacagaaac      3000
     agcacttgtt aaagttacta atgatcttct canagcttca gatcatggac tggtttctat      3060
     gctggttctg ctggacctca gtgctgcttt tgatacagtt gatcacagca tcctgttaca      3120
     gagactggaa catgtgattg ggattaaagg gacagcacta gactggttta gatcatattt      3180
     atcagataga taccagtttg ctcatgtcca cggcgttccc tcttcataca gtagggttag      3240
     ccatggagtt ccacaaggtt ctgtacttgg accaatcctt ttcaccttgt acatgcttcc      3300
     cttaggaaac attattcggc agcatggaat aaattttcat tgctatgctg atgacactca      3360
     gctatattta tccatgaaac cagaggagac agagcagtta gtgaagctcc aggcctgtct      3420
     taaagacata aagtcttgga tgncctcaaa tttccttctt cttaattcag acaaaactga      3480
     ggtcatggtg tttggtccta aacntctcag ggatagatta gatcacatna tcactctaga      3540
     tggtatctcc ttagcctcta gtctctctgt gaggaatctt ggagtaactt ttgaccaaga      3600
     tctgtccttt aactcacaca ttaaaacagt ctctagaagc gccttttttc acttgagaaa      3660
     cattgcaaag atcaggaaat tattgaccca gcatgatgct gaaaagttag tccatgcatt      3720
     tgttacttcc aggctggact attgtaattc attattatca ggatgtccaa acaattcttt      3780
     gagaagcctc cagctgatcc aaaatgctgc agctagagtt ctgacaggta ttgacaaaag      3840
     agatcacatn actcctgtac tggcntctct tcattggctg cccattaaat ctagaataat      3900
     ttttaaaatt cttcttctga cctacaaggt cctcagaggc ctagctccat cctacctgga      3960
     ggagctagtg acaccttatn atcccaatag accgctccgc tctcagaatg ctggtttact      4020
     tgtggtcccc agagtctcta aaggtagaat ggggggccga gcatttagct accaggcccc      4080
     cctgctgtgg aaccagctcc ctgtccaggt acgggaggct gactccatct ctacttttaa      4140
     gattagactt aaaaccttcc tctttgaaaa agcttatngt cagtaattct gtagttccag      4200
     ttattatcct agacagacta attatcatat ttagagggtc gtctaattat taggttaaca      4260
     tcttagttat gctgctatag gccgaggctg ccggggtcca gaaacatgat cacctgacag      4320
     gcctctgtca ccccgctggg tcatggtctc ctctcctctc ctctcctctc cgagtagatc      4380
     antggtgatg ttatttcttg tgtagttttt ctgcttctcc ccccctctct gtatccatct      4440
     acaggtatcg ccgccttcat agctgtatgc tgacctgctg acctccgacc ccgctgaccc      4500
     actcaactct tataccggca gcttgttata attaatgtat ttccatgatc tctgcctatt      4560
     ctctcctcta cctgtcctcc cccttctcct ctctctctac ccagccggcc atcagcagga      4620
     gggtccccct acatgagcct ggtcctgctc aaggtttctt cctgttaaag gggagttttt      4680
     ccttgccact gttgcttgtt gggggtcagg ccctgggatt ctgtaaagcg cctagaaaca      4740
     attttgattg taacagacgc tatataaata aagattgatt gattgattga ttgattgatt      4800
     gatt                                                                   4804
//
ID   SINE_SM     repbase; DNA   ; VRT   ; 161 BP.
XX
AC   .
XX
DT   20-JUL-1999 (Rel. 4.06, Created)
DT   20-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   SINE (SmaI-cor family) - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE_SM;
KW   SmaI-cor family; retroposon.
XX
OS   Prosopium spilonotus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Prosopium.
XX
RN   [1]
RA   Okada N.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (12-MAR-1997). Norihiro
RL   Okada, Tokyo Institute of Technology, Faculty of Bioscience and
RL   Biotechnology; 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa
RL   226-8501, Japan (E-mail:mhamada@bio.titech.ac.jp,
RL   Tel:045-923-1136, Fax:045-923-1136).
XX
RN   [2]
RA   Hamada M., Kido Y., Himberg M., Reist J., Cao Y., Hasegawa M.,
RA   Okada N.;
RT   "A newly isolated family of short interspersed repetitive
RT   elements (SINEs) in coregonid fishes (whitefish) with sequences
RT   that are almost identical to those of the SmaI family of repeats:
RT   possible evidence for the horizontal transfer of SINEs.";
RL   Genetics 146(1), 355-367 (1997).
XX
RN   [3]
RP   1-161
RA   Jurka J.;
RT   "SINE_SM.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 161 BP; 42 A; 33 C; 41 G; 45 T; 0 other;
     gatacgtggt ccttctgtag ctcagttggt agagcatggc gcttgtaacg ccagggtagt        60
     gggttcgatc cccgggacca cccatacgta aaatgtatgc acacatgact gtaagtcgct       120
     ttggataaaa gcgtctgcta aatggcatat atattattat a                           161
//
ID   Gypsy2-LTR_ST repbase; DNA   ; VRT   ; 616 BP.
XX
AC   AC146867;
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   Long terminal repeat of Gypsy2_ST retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   Gypsy retrotransposon; Gypsy2-I_ST; Gypsy2-LTR_ST; LTR;
KW   Tf1 group.
XX
OS   Xenopus tropicalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Silurana.
XX
RN   [1]
RP   1-616
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy2_ST, a self-primed Gypsy LTR retrotransposon from the frog
RT   Silurana tropicalis.";
RL   Repbase Reports 4(1), 28-28 (2004).
XX
DR   Genbank; AC146867; Positions   90970   90355.
XX
CC   Gypsy2-LTR_ST is a long terminal repeat from the Gypsy2_ST LTR
CC   retrotransposon.
XX
SQ   Sequence 616 BP; 100 A; 190 C; 151 G; 175 T; 0 other;
     tgtcaggcga tccgcactgc tcgcgctaag ccgccagttc agcgcatgcg cgattattcg        60
     cgtgcacccg tgcgtatctg cgcgcgcgca ttgacgcggt cacgtcggcg tgcgcacgct       120
     tcggcgcatt tccgcgcgaa aacaggcgca tgcgcatcgc gtttaaaaag acgccgcggc       180
     cttcagtcca gtgcgaggtg atcgtcttta ctgattgaca ctaagcggtt cctgttcctg       240
     atttctggtt tgacccctgc ttttgctccc gacttcgtct tccttctgca ttctgattga       300
     actcccggtt gtgacttcag ctttggacct cgactcctca agtttgctgc ctgtcctgac       360
     ttttggcttg ttcatcacgt tcctgtttgc tacctgtcca gatctacggc ctgccttgtg       420
     acttcgcttg cttaatcctg tttcctgtct cctgcaccca gcagagatct gtgcctcggt       480
     attagcacct ctgctattcc tcatctgagc tcaccctgtc tacataccca ggatctgaga       540
     actcagtggg aagcgtaggg gagtgcttca gtcgtccttc ctgcaatcca agcatctggc       600
     agaggtaagc ctgaca                                                       616
//
ID   MARINER_OL  repbase; DNA   ; VRT   ; 1640 BP.
XX
AC   AB110227;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Oryzias latipes DNA, mariner/Tc1 family transposable element
DE   sequence Mothra.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MARINER_OL;
KW   mariner/Tc1 superfamily; Mothra; transposase.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RA   Koga A.;
RT   "A mariner/Tc1 family transposable element of the medaka fish
RT   that contains a near complete open reading frame.";
RL   Unpublished.
XX
DR   Genbank; AB110227; Positions       1    1640.
XX
CC   MARINER_OL is a DNA transposon of the Mariner/Tc1 family. It
CC   contains terminal inverted repeats, and a nearly complete open
CC   reading frame encoding a transposase.
XX
SQ   Sequence 1640 BP; 521 A; 300 C; 354 G; 444 T; 21 other;
     ggtggacaag attgttggta cctctcagtt aaagagagag agtscacaat gctcactgag        60
     atgacttgar atgttcaaga gtracaatga attggggttt actgaaaatt aagtgatcaa       120
     ggtcagccat tacctttgag ttgttgatta acagaattgt ttgaggggca aactactgar       180
     atagttgttt tttttaaata attctcaggt ttaaatrata actcaggtat gtcctttcat       240
     tgacatcaca gctgttttca aacccataat cagtcagtct gctatttara tagagacara       300
     tagtcacgtt gctgtttggt gaaaagctgt gtcccacact gaacatggac aacagaaagc       360
     gaaggagaga attgtccccg agtcagattc agaacgcata aattatamcc gaaacgattg       420
     taaaaggtaa aaggcatata aaaaccaatc ttctaaacac aagtktgaaa atttcgctra       480
     rmcaaaatat ttagttcaaa agagttktga ngngccccgc gnngncngtn gnccaaacct       540
     cccctggacg tggctggaag agaaaattga tgacaaattg aggagccgga cagttggaac       600
     tgtatccaaa gagcccagaa caacctccaa agacattaaa ggtgaactcc tagatcaagg       660
     tacatcagtg tcagatcgca ccattcgtgg ttgtttgagc cagagtggac ttcatgggag       720
     acgaccaagg aggacaccac tgttgaaagg aaatcataaa aaagccagac tggaatttgc       780
     aaaaatgcat gttgacaagc cacaaagctt ctgggaaaat gtcctttgga cagatgagac       840
     aaaactggag ctttttggta aggcacatca gctctatgtt ggtagactca aaaatgaagc       900
     ttgcaatgaa aacaacactg tccatactgt gaaacatgga ggaggctcag ttctgttttg       960
     gggctgcttt gctgcatctg ggacagggtg tcttcaacat gtgcaaggta aaatgaaatc      1020
     tcaagatcat caaggcattc tgggtagaaa tgtgctgcct agtgtcagaa agcttggtct      1080
     cagtcgcagg tcatgggtct tccaacagga caaggatcca aaacacacag ccaaaaaccc      1140
     ccaagaatgg ctcagagaaa agcgttggac tattctgaag tggcctttta tgagtccaca      1200
     tctgaatcca ttgaacatct gtggaaggag ctgaaacatg ccatttggag aagacacccg      1260
     tcaaacatga gacacctgga gcagtttgct catgaggagt gggcaaaaat acctgtggac      1320
     aggtgcaagg cggctcatgg acaaatacag aaaccattta aatgcagtca ttgcctcaaa      1380
     aggttgtgca acaaatatta agttatgggt tccatcattt ttgtccagcc ctatttcatt      1440
     agtttgtttt tttaaacagt ttttaaatag tttcattaaa ataattctgt taatcaacaa      1500
     ctcaaaatta atggctgatt tggattattt aattttcaat acattttaat ttattgttac      1560
     ttttgaacgt ttcaagtcat ttcagtgagc attgtggact ttctttcttt aactgagggg      1620
     taccaactat tttgtccacc                                                  1640
//
ID   TOL_OL      repbase; DNA   ; VRT   ; 1855 BP.
XX
AC   D42062;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Oryzias latipes (Medaka fish) DNA for transposon Tol-tyr,
DE   complete sequence.
XX
KW   TOL_OL; Tol-tyr.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-1855
RA   Hori H.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (08-NOV-1994). Hiroshi
RL   Hori, Nagoya University, Division of Biological Science;
RL   Furo-cho, Chikusa-ku, Nagoya, Aichi 464-01, Japan
RL   (E-mail:hori@bio.nagoya-u.ac.jp, Tel:052-789-2504,
RL   Fax:052-789-2974).
XX
RN   [2]
RP   1-1855
RA   Hori H.;
RT   "Direct submission.";
RL   Unpublished (1996).
XX
DR   GenBank; D42062; Positions       1    1855.
XX
SQ   Sequence 1855 BP; 534 A; 315 C; 432 G; 574 T; 0 other;
     cagtagcggt tctaggcacg ggccgtccgg gcggtggcct ggggcggaaa actgaagggg        60
     ggcggcaccg gcggctcagc cctttgtaat atattaatat gcaccactat tggtttactt       120
     atgtcacagt ttgtaagttt gtaacagcct gaacctggcc gcgccgccgc cctcgccccg       180
     cagctgcgct ctcctgtctt tgagaagtag acacaaatgt gtgtgaagaa ggagaaggga       240
     gggggcgcgg ggtgagcacg gagcgtcgcc gcgtttgcgc atgcgcaaaa cctggctggc       300
     tcatctttca ggggaggcga cggtcgcggg cttgatgaaa aaaataaaag taaaaactgc       360
     gactgcgccg tcatgtagcg aatcagcgcc cctggctgta gctgcacgcg ctcctgctgg       420
     aaatgtgtga agaggggggg gggggggggg gctgcgggga atcagttcaa ttgtgggacg       480
     cttccaaatt aagtggctag gtggggacaa gggcgggggt ttgaatctac ttcataaaac       540
     ctttttatat tataagtcag tcataaggtg acattctata acctacattt taataaaggt       600
     ataaaaaata tattctgctt tttttgggtt aattttgtgt gaaatgtcca aataaaaaaa       660
     atggcaacac aaaacaatgc tgtcactaag gtgacagttg gttcagtcga cggacttgat       720
     gccttcttcg tgacgtgagg acatttatgc caaacaaacg ccaataaaca tctaaaatat       780
     ggaaaagaaa aggtcaaagc catctggtgc ccaatttaga aagaaaagaa aagaagaaga       840
     ggagaaaaga gataaagaaa agggtaagtc ctcacagctt gatgcatgtt ttttctaaat       900
     tctaatgcta cctgccctac aacaacgttg ccgatgaaaa ctttattttg gtcgatgacc       960
     aacactgaat taggcccaaa tgttgcaaat agcgtcattt tttttttttt ttttagattt      1020
     tattcttaaa aatttgctct gccttaactt gtaacattag ttatgattca tgtgtctgtc      1080
     tgctctgctg taacacaaag gttttgttgg gttttgctgt tgtatactag ctcataatgt      1140
     taaaaaagct gtgatggtta cacagcatgc tggtgctgcc ataagatgct aatggggcaa      1200
     ataatttgag attggtcatt aatttaataa tcatttgtgg cagcctaaac gttttcacaa      1260
     tgtttttttg acatttaact ggggatttag gggttaattt tgagcctgca tatgaagttt      1320
     attttttatt tgttttacaa atgtgggatt atatttttag ccaatagaat ttccataaat      1380
     ctgtaggtag ttttaaaaat gaatatttac catttactgc aactctatgg ggacaaaaca      1440
     taatgtaaca ggtcataact aaaaatgtgc caatcaaagg attgaagacg gaaaacatga      1500
     gttaattttt cttctctgaa gtagagatcg atatagaaca tgacaattta aatttccaat      1560
     tcataaatgt ttttaaaata tttattttat attatttatt taacattgag tttgattcaa      1620
     tattttctta gctaactgta tttttgccat gcttatggtc ttttattttt tgtgttctga      1680
     taacttttat aatgcttttc agaattttga catcttttgt atccacttct taatttcaat      1740
     gacaataaaa catttcagtt gacgaagaca aacaaagttc tgttgtgact atgggggggg      1800
     ggggcgcctg gggatggtct cgcccgggga gtaattcagg gtagaaccgc cactg           1855
//
ID   ROn-1_ON    repbase; DNA   ; VRT   ; 285 BP.
XX
AC   AF097734;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Tilapia nilotica ROn-1 SINE repeat region.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; ROn-1_ON;
KW   SINE repeat element.
XX
OS   Oreochromis niloticus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Labroidei; Cichlidae; Oreochromis.
XX
RN   [1]
RA   Bryden J.L., Denovan-Wright M.E., Wright M.J.;
RT   "ROn-1 SINEs: a tRNA-derived, short interspersed repetitive DNA
RT   element from Oreochromis niloticus and its species-specific
RT   distribution in Old World cichlid fishes.";
RL   Mol. Marine Biol. Biotechnol 7(1), 48-54 (1998).
XX
DR   Genbank; AF097734; Positions       1     285.
XX
SQ   Sequence 285 BP; 68 A; 74 C; 70 G; 73 T; 0 other;
     taaatggatg aatgctgtag tttgtctctg tgttgaggtg gatcagtgat ctgcagagtc        60
     ctgtcctccc tgtgatggag ggagatgacg tcactctgct ctgtaaacaa agaccactcc       120
     ctccaacctc ccagctgctt tctataaaga tggctccctc atcaggaagc agcctacagg       180
     tcacatgacc atccagcatg tttccaggtc tgatgaaggc ctctacaagt gtgacatcag       240
     cggtcatgga gagtctccat ccagctggat cactgtcaca ggtga                       285
//
ID   RHM5_XL     repbase; DNA   ; VRT   ; 1037 BP.
XX
AC   X00037;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Xenopus laevis monomeric repeat unit of satellite DNA called RHM5
DE   (repetitive Hind III monomer).
XX
KW   SAT; Satellite; Simple Repeat; RHM5_XL; Repetitive sequence;
KW   XLRHM5; tandem repeat.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-1037
RA   Meyerhof W., Tappeser B., Korge E., Knoechel W.;
RT   "Satellite DNA from Xenopus laevis: comparative analysis of 745
RT   and.";
RL   Nucleic Acids Res 11, 6997-7009 (1983).
XX
DR   GenBank; X00037; Positions       1    1037.
XX
SQ   Sequence 1037 BP; 286 A; 243 C; 244 G; 261 T; 3 other;
     aagcttaaaa aacaaaaagc atttgagaag ctgactagcg acggcagcta tggtgcgatt        60
     ctgtcaaaaa gaaagtagag gtcgctcttg aatgcagatg cagaagatgg cacagatgaa       120
     ccttcttgaa attaagcatt tgagaagctg attagcgaag gaagttttgg tgctttaaca       180
     aatgtgaaat attggttact cattaatgta accagaagaa aaggcacctt ttccctgaaa       240
     atgcacccct aggactcaca cgctgggccc tttgggaaag aaacaaggtg atttgctgca       300
     tgcgccatag aacaaccatg tgtgggtgct gattttgctg tctccaaaat agcagtcgct       360
     cctgaatgca gcatgaagaa aatgccatcg gcgaaccgca caaataaagg gttcgtacgg       420
     cttaaagaaa cctgaaaagt cacccaacca tgtttagctc agaaccccac gggcagaaac       480
     aggtgcttta accattacac cagagcaaac tagacctttt gggaaaggtt ccggatgact       540
     gtaagaactc attgttccct tgtgcctctg cattgacggg cagggccgga agtccatctt       600
     ctgcttaata aagtcaatac caacctgagg ccctttccaa atagagcctg cctgaatagg       660
     tcagtcggta gagcgcaggg ctctggtcga taacctngtc caaaaggttg tgggttcgat       720
     tcccacctct gccggaaact caattccang gcagccctng tccgctgtgc tttaaccaac       780
     tctcgagagt gatggaaggg caagtgtcag aagtccgcct tccatttggc tgcccctttt       840
     ttcaactggg gttgtccttc taagctacgc cggtatgtac ttcgaattca ggcagggctt       900
     ccccatctga caccttgccc ttacctttgc attaaattgg gtattttttc cccagacaga       960
     actctttttg gggtttgcct agcatcagcc tgaaaatgac cttggcaaat tgcttaatga      1020
     ggacagagtt ctgtgcc                                                     1037
//
ID   GGLTR10B_LTR repbase; DNA   ; VRT   ; 382 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV2 Endogenous Retrovirus from chicken.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-382
RA   Smit A.F.;
RT   "GGLTR10B_LTR - ERV2 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   LTRs of GGERVK10-derived non-autonomous element; 1-2% div.
XX
SQ   Sequence 382 BP; 114 A; 76 C; 112 G; 80 T; 0 other;
     tgtagtaggc gtcttgcggg ggcacgggat gtacgggaca ggcctctccc taaacataga        60
     gagatagtgc tatcgtgctg accttgttgc agagaaaaca ggagaagaag aaggatgata       120
     aaagaatgtg gaaacggcca aataaggcac aatgttatct ggtgtgaact aatcagagtg       180
     ggacatgaca gcacggttat ctaggtaaaa atgtatataa gctgtgttta gtagtgaata       240
     aacgccattt gcctcactta ctcctggggt ctgggtgagc atctggcccc gacctggtaa       300
     agggtcggtt tcgcccagca gtaagcccta catgtggaca gaggacgaac accggacgag       360
     cgaacggaga ctacatgcaa ca                                                382
//
ID   GYPSOL_LTR  repbase; DNA   ; VRT   ; 692 BP.
XX
AC   BA000027;
XX
DT   29-JUN-2005 (Rel. 10.06, Created)
DT   29-JUN-2005 (Rel. 10.06, Last updated, Version 1)
XX
DE   Long terminal repeat from gypsy-like element.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-692
RA   Matsuo M.Y., Asakawa S., Shimizu N., Kimura H., Nonaka M.;
RT   "Nucleotide sequence of the MHC class I genomic region of a
RT   teleost, the medaka (Oryzias latipes).";
RL   Immunogenetics 53(10-11), 930-940 (2002).
XX
DR   Genbank; BA000027; Positions   17153   17844.
XX
CC   This is a relatively new element. LTRs are 100% identical
CC   and ORF appears to be intact.
XX
SQ   Sequence 692 BP; 199 A; 102 C; 174 G; 217 T; 0 other;
     tgtgacaacg agcagctgtc acattaaaga aacagacaga aaaggttcat tgacagagtt        60
     tattgttttg gtgcagttaa agttaagcag cggcagcaat gttcttctag gtcaggagca       120
     cctgtgaaaa cacatagatt taaatatttg ttttacacct gctgccttgt ctatgccttg       180
     tctgattgtg atgacttacc tctgttttct gtgtcagaaa tggtccgcca gcaaaagagg       240
     tccctaaggg tacaaggacc ttatattggt tccagggagg gaaccaaaat cattgtatag       300
     ttaacagggg agatttagat tagtaatttt agtattggag tgaattattg aaatgtttta       360
     ggaacagtct gtgtattcta tttttgcatg gggaaattat ctatttttat aggggttagg       420
     ggaactttga atgtacatat tttaatattt tgtgtaaata gattttctgt gggaacctgg       480
     gtggatggta gctcccaaag gtgaaatcct ataaaggtgg gagttgtaac cattgggttt       540
     tgttgttggt tggtggttag agctgggcca tgactgtgaa atgccaacag aagaaattgg       600
     aaaataaagt ttgagtaaaa aatcaagtcc tgagactccg cctgtgcttc taccatgagg       660
     atggcctccg agactacgag ctgaacgtga ca                                     692
//
ID   XR_XL       repbase; DNA   ; VRT   ; 603 BP.
XX
AC   X05025;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Interspersed repeat; nonautonomous DNA transposon.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous;
KW   nonautonomous DNA transposon; T2-group; TIRs; XBR_XL; XR_XL.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-603
RA   Unsal K., Morgan T.G.;
RT   "A novel group of families of short interspersed repetitive
RT   elements (SINEs) in Xenopus: evidence of a specific target site
RT   for DNA-mediated transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248, 812-823 (1995).
XX
DR   GenBank; X05025; Positions    5614    6216.
XX
CC   Nonautonomous DNA transposon; 16 bp TIRs (TTAAAGGRR...); belongs
CC   to
CC   the T2-group [1]. TTAA target site.
XX
SQ   Sequence 603 BP; 181 A; 109 C; 129 G; 184 T; 0 other;
     ttaaaggaga actaaaccct aaaaattaat agggataaaa atgccatgtt tatatactga        60
     atttattgca ccagcctaaa gtttcagctt gtcaatagca gcaatgatcc aagacttcaa       120
     acttgtcaca gggggtcacc atcttggaaa gtgtctgtga cactcacatg ctcagtgggc       180
     tctgagcaac tgttgagaag ctaagcttag gggtcgtcac taattatcca gcagaaaatg       240
     aggttggtct gtaatataag ctgatgctac agggctgatt attaaattct gatgctagtt       300
     gctctggttt ctttgctgcc atgtagtaat tgtccaaatt aataactaat cagttttata       360
     ctgtgacatt tctattccgt gtactatata ttttaagatg gcccttaagc tctgttaatg       420
     agagcagcac agagcatgtg cagtcaatca gcagaaaaga agatggggag ctactggggc       480
     atctttggag agatagatct ttactgctaa agggctgtgg ctgccttggg cggtacagaa       540
     gcacaaaaca taatgtacaa catttctaga tacttcttta gtttaacttt ccttgtcctt       600
     taa                                                                     603
//
ID   ENS1B-LTR   repbase; DNA   ; VRT   ; 879 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; ENS1B-LTR;
KW   LTR retrotransposon; Soprano_LTR.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-879
RA   Smit A.F.;
RT   "ENS1B-LTR - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000028 5 bp tds; 4% subst.
XX
SQ   Sequence 879 BP; 200 A; 250 C; 208 G; 220 T; 1 other;
     tgtaagagat tattctttta tatgattgac tcaaagtttg ctgaggaaca agtccaggca        60
     agtcctgggc aaaggtagag aaatcttctg tctggaggac actgatggac aggtcctggc       120
     taagggttgt gaaatccttt aaggagcaca gatggacaag gccaggggca acgagagagg       180
     gataagctgc tgataatggc cgggaaacgg tcttttgtgt ggacttatct cgaggaagat       240
     ggccatctca ggaggtacgc acatgactct tgctcaagca cccagggatg tcacgtaggc       300
     aggaaaaaan ggaggataaa agagggtcca acaaccatga ggagagggtt tctgccatca       360
     gatccctcac cacgacggac taggggtttc tgccatcaga tccctcacca cgacggactc       420
     gaggtttctg ccatcagatc cctcactacg gaccgtatgc tgacggactt ccctgggcct       480
     gctacctgag acctgctgct tcctcccgga cttactctgc ggcttcttcc tggacccacc       540
     cggtacctgc accctctcgt tgcccaagac cggcctcgct gctcctgccc ttcggcctcg       600
     gaccgtcgga acgtcgtgca acgggactac tgccggatcc tggtggtgac tatccccgct       660
     ttacgcaatt cttgcttctt tctatctttt ctatcgctcg ccttcccttc cccatcaccc       720
     caatccgtaa tagtgtccgt cctccccttt cttcatctcc cttattaaca tttgtaataa       780
     actggtcgga ccaacatttg aaccgttgtt tcttaatctc acgccgggca tacatatttc       840
     aaagaacctc ctctccctcc tataaattgg agcgagaca                              879
//
ID   Soprano_LTR repbase; DNA   ; VRT   ; 913 BP.
XX
AC   .
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   01-JUL-2005 (Rel. 9.08, Last updated, Version 2)
XX
DE   Gallus gallus Soprano retrotransposon, LTR sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; ENS1; LTR; Soprano_LTR;
KW   retrotransposon.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-913
RA   Smit A.F.;
RT   "ENS1 derived retrotransposon, LTR sequence.";
RL   Direct Submission to Repbase Update (SEP-2004).
XX
RN   [2]
RP   1-913
RA   Wicker T., Robertson J.S., Schulze S.R., Feltus F.A., Magrini V.,
RA   Morrison J.A., Mardis E.R., Wilson R.K., Peterson D.G.,
RA   Paterson A.H., Ivarie R.;
RT   "The repetitive landscape of the chicken genome.";
RL   Genome Res 15(1), 126-136 (2005).
XX
CC   [1] (Consensus)
XX
CC   cENS is expressed in embryonic stem cells.
XX
SQ   Sequence 913 BP; 212 A; 270 C; 207 G; 224 T; 0 other;
     tgtaagagac tattctttta tatcattgac tcaaagtttg ctgaggaaca agtccaggca        60
     agtcctgggc aaaggcagag aaatcttttg tcttgaggac actgatggac aggtcctggc       120
     taaggattgt gaaatcctct aaggagcaca gatggacaag gccaggggca tcgagagaga       180
     gataagctgc cgctaatggc cgggaaacgg tctttttgtg tggacttatc tcaaggaaaa       240
     tggccatctc aggaggtatg cacaggactc ttgctcaagc acccaggaat gtcacgtagg       300
     cagcagaaaa tggaggataa aagagggtcc aataaccaca acggtggaag ctgatccttc       360
     accacaacca cggcaacggg agaggcttat ctctcaccac gacagacttg aggggttctc       420
     tgccaactga tctctcaccg caacgtgtag acggatctct acgtggagac tgatctctca       480
     ccacgacacg agcttcctgc cttccgatcc tcctctacgg accgtttgct gacggacttc       540
     cctgggcctg ctacctgaga cctgctgctt cctccctgac ctgcatcctc tcgctgcccc       600
     agaccggcct cgctgctcct gcccttcggc ctcggaccgt cggaacgtcg tgcaacggga       660
     ctgctgccgg atcctggtgg tgactatccc cgctttacgc aattcttgcc tctttctatc       720
     ttttctatcg ctcgccttcc cttccccatc accccaatcc ttaatagcgt ccgtcctccc       780
     ctttccccat ctcccttatt aacatttgta ataaactggt cggaccaaca tttgaaccgc       840
     tgtttcttaa tctcacgccg ggcatacata tttcaaagaa cctcctctcc ctcctataaa       900
     ttggagcgag aca                                                          913
//
ID   HE1_SINE    repbase; DNA   ; VRT   ; 366 BP.
XX
AC   .
XX
DT   27-FEB-2002 (Rel. 7.01, Created)
DT   27-FEB-2002 (Rel. 7.01, Last updated, Version 1)
XX
DE   Mustelus manazo HE1 SINE element - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; DANA;
KW   HE1_SINE.
XX
OS   Mustelus manazo
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
OC   Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea;
OC   Carcharhiniformes; Triakidae; Mustelus.
XX
RN   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs.";
RL   Mol. Biol. Evol 16(9), 1238-1250 (1999).
XX
RN   [2]
RP   1-366
RA   Jurka J.;
RT   "HE1_SINE consensus sequence.";
RL   Direct Submission to Repbase Update (24-JAN-2002).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 366 BP; 73 A; 76 C; 114 G; 99 T; 4 other;
     gggcggcacg gtagcacagt ggttagcact gctgcctcac agctccaggg acccgggttc        60
     rattcccggc tcgggtcaac tgtctgtgtg gagtttgcac gttctcccyg tgtctgcgtg       120
     ggtttcctcc gggtgctccg gtttcctccc acagtccaaa gaygtgcagg ttgataggtt       180
     aattggccat gataaattgc ccctagtgta ggtaggtggt agggaaatat agggataggt       240
     ggggatgtgg taggaatatg ggattagtgt aggattagta taaatgggtg gttgatggtc       300
     ggtgcagact cgatgggccg aatggcctcc ttctgcactg tatctctaaa ctaaactaaa       360
     cttrct                                                                  366
//
ID   SSNHEI      repbase; DNA   ; VRT   ; 384 BP.
XX
AC   S74135;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   NheI-type repetitive element.
XX
KW   repeat; SSNHEI.
XX
OS   Salmo salar
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Salmo.
XX
RN   [1]
RP   1-384
RA   Goodier L.J., Davidson S.W.;
RT   "Characterization of a repetitive element detected by NheI in the
RT   genomes of Salmo species.";
RL   Genome entry [NCBI gibbsq 157667] from the original journal
RL   article. This sequence comes from Fig. 2 37(4), 639-645 (1994).
XX
DR   GenBank; S74135; Positions       1     384.
XX
SQ   Sequence 384 BP; 136 A; 80 C; 54 G; 114 T; 0 other;
     gctagcatat aatgtcacaa aaaccaaaac cacagctaaa tgcagcacta acctttgatg        60
     atcttcatca gatgacactc ctaggacatt atgttataca atacatgcat gttttgttca       120
     atcaagttca tatttatata aaaaaacagc tttttacatt agcatgtaac tagcatgttc       180
     agaactagca ttcccaccga acacttccgg tgaatttact aaattactca cgataaacgt       240
     tcacaaaaaa cataacaatt attttaagaa ttatagatac agaactcctt tatgcaatcg       300
     cggtgtccga ttttaaaata gcttttcggt gaaagcacat tttgcaatat tctgagtaga       360
     tagcccggcc atcacatggc tagc                                              384
//
ID   PTSAT       repbase; DNA   ; VRT   ; 768 BP.
XX
AC   X14379;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Satellite; flanking minisatellite locus.
XX
KW   MSAT; Satellite; Simple Repeat; PTSAT; satellite DNA.
XX
OS   Phylloscopus trochilus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Passeriformes; Sylviidae;
OC   Phylloscopus.
XX
RN   [1]
RP   1-768
RA   Gyllensten U.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (13-FEB-1989). Gyllensten
RL   U., Department of Medical Genetics, Box 589, S-751 23, Uppsala.
XX
RN   [2]
RP   1-768
RA   Gyllensten B.U., Jakobsson S., Temrin H., Wilson C.A.;
RT   "Nucleotide sequence and genomic organization of bird
RT   minisatellites.";
RL   Nucleic Acids Res 17(6), 2203-2214 (1989).
XX
DR   GenBank; X14379; Positions       1     768.
XX
SQ   Sequence 768 BP; 147 A; 245 C; 183 G; 193 T; 0 other;
     ccacagctca tctactccga ctcctggctc gtacttccag gagtggtgcg tgtgtctccc        60
     gtggttatct caagtcctat tcctcgcaca tgttgtacgt tcgagagtgg atgtagcatg       120
     ttcctgcaag acatcttgga cgtcactatc agtcgagctc cactcacgac atagctcttc       180
     cttccgcttg tgcgcacata tgctagttct tactctcgca tccatccaca tgtcacacct       240
     accatacgca attctgacgt ccgcgagtac atgccatagc atcgctcgtt gacacacgtc       300
     gcctagcgct ggctcacact cgtaggctcg catgcatata ctcatcgact atacatttct       360
     gcgcgtgtca ctcattcctc tgccaactct catcgtgtcg ccatagctcg cttggcgtca       420
     catgcgcgtc ggaattcgtc gtcgcgggag tccttccttg ccgtcctcac tgctcacgcc       480
     tcgacgactc gtgccgtaga caagcgcgtg ccatgttgcc tcgctagcac gcgctgctct       540
     catacgcttg cgagtacatc cgctcgcaag tgcgtctttg cctccacgct catcgcgtac       600
     gcgtcttgct acacatgaca gatcgtgtct cgacaggtcg gaattggctt agagtgacga       660
     agcgctcaac taacgctagg gcgtgcacat gtggcagagg gcctacgcaa gcaggctagg       720
     cgtgccagca tacgtgagga atctgttacg ctcggaaggt cacacacg                    768
//
ID   GGLTR1      repbase; DNA   ; VRT   ; 243 BP.
XX
AC   M31062;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Chicken endogenous proviral avian retroviral LTR.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; GGLTR; GGLTR1;
KW   Long terminal repeat (LTR).
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-243
RA   Boyce-Jacino T.M., Resnick R., Faras J.A.;
RT   "Structural and functional characterization of the unusually
RT   short long terminal repeats and their adjacent regions of a novel
RT   endogenous avian retrovirus.";
RL   Virology 173, 157-166 (1989).
XX
DR   GenBank; M31062; Positions     107     349.
XX
SQ   Sequence 243 BP; 60 A; 58 C; 64 G; 61 T; 0 other;
     gatgttgtaa taggcgtgat cggggtctcg ggatgtaacg tgtcaggctc ctccccatgt        60
     gttaggtacg tgccacgtgt accatccagt gggcgtacac gaagggttaa aagatatata       120
     agtgcttgtt agaacttaat aaacgccatt ttgccgctca tcatattggt gtcacctcgg       180
     tatttggcca agccgcaggc tcccctaagc aacgaacatc acggttgcct gcgaaaggca       240
     aca                                                                     243
//
ID   XLGST3      repbase; DNA   ; VRT   ; 327 BP.
XX
AC   M36869;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   X.laevis repeat element from gastrula mRNA.
XX
KW   Repeat region; XLGST3.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-327
RA   Meyerhor W., Korge E., Knoechel W.;
RT   "Characterization of repetitive DNA transcripts isolated from a
RT   Xenopus laevis gastrula-stage cDNA clone bank.";
RL   Roux's Arch. Dev. Biol 196, 22-29 (1987).
XX
DR   GenBank; M36869; Positions       1     327.
XX
SQ   Sequence 327 BP; 89 A; 48 C; 81 G; 109 T; 0 other;
     ttgtcggaac atttactgga gatagatata taggtcagtg cattacatat atcagtattg        60
     gccgctgtgt acaacatctt gctgcctggg gtcttaggtt cgattccagc agggcactgt       120
     ctgcaaagtg tttatatgtt attcctgcct gctctccaaa aacatggtgt gtatttggct       180
     tctgataaaa gtgatgatat tgtgggtgta tgcaatagga attttagact gtaggctcca       240
     ctggggtaag gactgatgtg aatgatgtat aatctctgta aagcgctgtt gttggtgcta       300
     tataaataaa ggatgataat aataata                                           327
//
ID   GGERVK10    repbase; DNA   ; VRT   ; 7076 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   ERV2 Endogenous Retrovirus from chicken.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-7076
RA   Smit A.F.;
RT   "GGERVK10 - ERV2 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000660. There are many subfamilies. Some wit large extra
CC   pieces, partially represented in GGLTR10-int ORFs 206-2212,
CC   2424-5135, 5144-6799.
XX
SQ   Sequence 7076 BP; 1611 A; 1718 C; 2144 G; 1556 T; 47 other;
     aatggtgccc cgtgtgaggc acgggtgaga ggcctgtgtg aggcacagac tgtgttctga        60
     tgctctctgc gctgctgcga gctgtggggt gacgccatag cacgagattt ggggtgacgc       120
     ccagcccgag tgccctgaag agaggggtag cctgcagaag acgattgggg tgacgccctg       180
     cagaagatca tggcgacgac gatagtgctg gccggcaagt ggaacctgcg ttgcggtggg       240
     gtccgggggg gacgacagga cgcccgcgga ggacccgtgt ngacggcggt gtcgantgcg       300
     aatccgnggt gacggcgacg ggctgactat ggaacatgtt cttaaggtac tgcttcagtt       360
     ttgtaaagac tactgcggga agaatgctcc ttctaagaag gatatccacg cagttatttc       420
     ccggttagag cgggaggggg agattaaagc cccccaggag atctttgatc accggagatg       480
     ggatgatctc acctccgcac tcgcgcaaca tattatgagc gctcagaagg gtgggtcgga       540
     gctaaaaact tggggactga tactaggggc gctgaaagct gcnagggagg agggaaaggt       600
     atnggaggan gcccggcggc tctggggtct tgaccaggcg gaccccggag ggggttcgca       660
     gggggtcagc tcggacgcga aacgcgggtg ccggccggga gttagcctct cttgcaggaa       720
     tccagacgag gagcgatcga caaagatggc gccgggtgat ccgancacac ccgnacaaac       780
     gncgggggac aaacaacaag atggcgggct ccagccgtcg gcacccttat cgggtgaaga       840
     caccttatcg caagaactgg aatccccgcc tccgtatccc cggcagccgc tgtatccttc       900
     attgcaaaac ttcaccccgc ccataggggc ggagaaaggg gtggaggaaa aagggggcgg       960
     tacacctgct ccctcncagg gggcggagag tagggattac acccccccgg agggggcggg      1020
     gggtaggcgc ggtactgact ggcaggggat taaggangcg gcagaggaaa agggcttagt      1080
     caccgcgttc cccgtagtga ttggggagga ggggccggag tggactccgt tagacccgaa      1140
     aggagtcaca cgcttaatag aggcggtaga gaagaaagga ttgagatcac ccctgactnt      1200
     gaatgcgtta gaagctctna cagaaccagg ccctatgctc ccctacgaca tagagaacct      1260
     tatgcgtatg gtactcaagc ccgtacagta cacactctgg aaagaggaat ggctaactga      1320
     gcttaaacgg gtggtagcag ccgcacaaga cgatccaggg caccctgtgc atggcacaga      1380
     tatgctgagg cttacgggat ctgcagcggg aatggccacc ccccgtgctc aactngccca      1440
     gctgcgccca ggggaattgt tagcgactac tgatgcggct atgggagctt tcaggaagtt      1500
     cgcccgtagc gcagagcctt ccactccttg gtcggagata gcccagggtc caaccgaatc      1560
     ttttcaagag tttgctgata ggctaattaa ggcggttgag gggtcggact tacccagagc      1620
     tgtccatggc cctgtaatcg tggactgcct caaacaaagg tctcttgagg atgtcaaaac      1680
     cctgcttcgt gcagctcccg ggaaaatctc cacaccgggg gaggttatta ggtatgtgtt      1740
     ggataaacag aaanctaccc cgctgactaa tgagggcctg gcggccgcta tcactaacgc      1800
     gatggctgtg gcntcgaggc caccgcgagc cgcagaaccc tccagaggcc cttgctttcg      1860
     gtgtggccaa ttcggccaca ctaaagccca gtgcantgcc ccagtggacg angagagggg      1920
     tggcccttgc ttccggtgtg gccagttcgg ccacattaaa gcccagtgca gagccgcgag      1980
     gtacggggag aggggtagag ttacatgcca actgtgcggc aagggagggc ataatgcccg      2040
     gcagtgtaga agcgttagag ttcagccgca gggaaacgat tgggggaggg tgcctcaggc      2100
     ccagggcccc tcccgcagcc cgcgggatgg gccgtcgatg atacctatgc ccagcccgcc      2160
     agtcatgcng gctcccanct tgaagttcat gacacgccca ccgtggcatt agctttagac      2220
     tgccaaaacc gcccgtttgt taaggcgttc atgtcgtatg ttggcctgcc gcctgacttt      2280
     tcgggtcgtc gntctgtccc ggtcacagcg cttattgact cgggggcgga tgtcacggtg      2340
     atatctgatg aggactggcc taaggagtgg cctgtgggga cctctcaggt gatcagaggg      2400
     gtgggnggga ccatatctac tagacgatcc tcggcagagg tagagattgt cgtagtcaac      2460
     agggacggtt cgttggagag acctgccttg cttgtcccgc ttattgccag agtaccaggc      2520
     ncactactgg gacgggactt cctaaacagt gtgggtgcac gcattacaaa tttntagtaa      2580
     gggccactgt ctgccagctg tccactgcat acgcgattcc attgcggtgg aaacgggacg      2640
     cgcgccccgt ttgggtggat cagtggcctc ttcccctcga gaaacttaaa gcactcaggc      2700
     anttaatctc acaggaattt caattgggac atatcgaacc ctctcttagt cagtggaaca      2760
     ccccgatctt tgtcatacag aagcgctccg gcgccttccg cctgctgcac gacttgcgcg      2820
     cggtcaatgc ccagcttgta ccttttgggg cagtgcagca gggtggaccg gtactgtcag      2880
     ccatacccaa ggagtggccg ttggtggtca tagatcttaa agactgcttt ttctccatcc      2940
     ctctcgcgga agaggatcgg gaggcattcg cctttacggt accgacgctc aataacttag      3000
     gccccgctga aagatttcag tggcgtgtcc tcccgcaagg aatggcgtgc tcccctacta      3060
     tttgtcagct agtggtaggt agagtattgg agccagtcag gagagacttc cctcgataca      3120
     tactcgcgca ttatatggat gatcttttgc ttgccgcccc tactgagtta gggttacaaa      3180
     cgcttgagtc gcgggtgatg tctactctaa ctgccgctgg gttcactatt tcagagcaaa      3240
     agatacagag aggnccggga gtcgagtacc tggggtataa gtttggcccc gagacggtcc      3300
     agccagcggg tcttgccatt caaccgcgcg ttaaaacgct gtgggatgtg cagaaactgg      3360
     taggagccct ccagtgggtt cggggtgcat tggggatacc ccctcgattg atgaagccct      3420
     tttatgatca gctgaagggg tctgatccga aggaaccccg agacctgact catgaaatgg      3480
     ccacggcctg gcaagagatc ttacaaagct gtatggaaca gtcgctcgcg cgatgggatc      3540
     ccaccgaggc ccttgaagca gctgtttgca ggtgtgaggc aggagctgcc gctgttctgg      3600
     gccactctct cgacgccaaa ccgcaaccat tgtggtggct gttctcagta caacccacgc      3660
     gcgcctatnc ctcctggctc gagatattgg cgatgttact caggaaaacc cgattgctct      3720
     cggtgcgggc tctagggaga gaacctgacg tgatacactt acagagttca ttccgtgatg      3780
     tacagccgct ccctgagacc ctnctcacag tgctaagaga ttttggagga ctgataaggt      3840
     actcagactc cctncccatt tttgacgtgg ctaagccgct tgctgtctcc ttgcgggtgc      3900
     gggttcaaac ctctccgctt gaagggccca cgttattcac agacgcatcc tcgaggaccg      3960
     gtcagggggc ggtggtttgg caagattcaa gcaatagttg gcagactgct attttcgcag      4020
     accgaacagt cagcgtgcag atgctcgagg tgacggccgt agccgttgcg gtgcgccttt      4080
     ggcgtgagat accttgtaac atcgttacgg actctgcttt tgcngccaaa ctactagccc      4140
     ggatgggtca ggaaggcctc ccgagcacag aagctgctgg catnctggag gaggctttag      4200
     cctctcgtac ggcccctgtt gctattttgc atgtgcgcag tcactctgag gtgccaggct      4260
     tttttacaac aggtaacgcg gtggcagaca aagccgccag tacgcaggtt tttacagtcc      4320
     aggaagcccg tgatctccac tctactcttc atataggggc ccgngcgctc tctagggctt      4380
     gttccatccc actatctgtt gcgcgcgatg ttgttcaggc ntgtcctcat tgtaactcgg      4440
     cgcctgtcat aggggccggg gttaaccccc gcggcctngg accattacag gtntggcaaa      4500
     cagatttcac ctgggagccn cgtctatcnc cccgtccatg gctagcggtt acggtagata      4560
     cctcctctac cgtcattgta gccacncaac atgctaagtc caattcaaca tcagcacaga      4620
     atcactgggc aaccgctatc gccatacttg gcctgcctag ccagattaag acagacaacg      4680
     gatcgtgttt catctcacgc tcaacgcagg aatggctggc ggtgtggggg atctcccaca      4740
     ttacgggcat ccctggtaat tcccagggtc aggcaatagt ggaacgcgcc aaccgactcc      4800
     tcaaggataa gatacgtgtc cttggggagg gggaaggata tagggacagg atacctgtcg      4860
     gtagacaggc tgagctcctg gcgaaagccc tctacgcatt gaaccatttt gagcgtggtg      4920
     acagtaagcg aacgccagtg cagaagcatt ggcagccaaa ggtcttgggt gaagggcctc      4980
     cagtcagagt aaagacagat agcggacnat gggaagaagg atggaggata ttggtgtggg      5040
     gtagggggta cgccgcagta aaacatgngg agacagggaa aattgtatgg actccatcac      5100
     ggaaggttaa accggatctc agaaaggacg nctgagatta taacccgttc cgtatttgtg      5160
     taataagcaa gacaagagtt cccttttgca gaagctgctg gtgggaaaac cgaagccaac      5220
     tccagaacaa ccgggggacg gacgacggga ccgagagcca ctcatcaaga ggagcaccac      5280
     acctgcaacg ccgacacttc tgatactgct gatgtttatg gtaacggggg gggagggagt      5340
     acaccttnta caacagccac gcaatgtttg ggtcacgtgg gcgaatctca cggggcggac      5400
     agacttctgt cttggccttc agtccgctac ctctcccttc cgcacctgtt tggtgggttt      5460
     gccgagttac caattggagg agtttagggg atatacggtc aactacactg tgtgtaggaa      5520
     tgaaacggac gctgctacnc aaacggcgtg tctgattcaa tcattaaacc ataccctccc      5580
     ctgggacccc caagaattgg atattttagg gtctcaaatg atcaggaacg gaacaacacg      5640
     tacgtgtgtc acctttggtt caatgtgcta tacagagaac gatcatagca gagtctgtca      5700
     caattttgat gggaattttg atggggctgg tggggtggag gcagaattgc gtgacctcat      5760
     agcgagatgg agtaatgatg accctcgtat aagaccctat gctaaccgat catggacggt      5820
     ggtgagtcca atgaacatgg agagtttttc gatagctggt gcatattgtg gnttcacaaa      5880
     gaacgaaact cgttattata aagggggctc ttctgattgg tgtgggtcaa aaggaggaaa      5940
     atggtcagag ggacacagga atgggacaac atgctctggg tgcggtggta attgcacggc      6000
     ggaatggaac aattatgcat atgggttcac cttcaggagg aatgtgtcgg aggtattgtg      6060
     gaataatggg actgctaaag cactcccccc aggtatcttc ctgatttgtg gcgatagggc      6120
     atggcaaggt gtaccagcta atcctctggg aggtccgtgt tacttaggga agttaacgat      6180
     gtttgctcca aatcatacag gatggcttaa tatatctcgc agtttacatc ctcgcaggcg      6240
     ccgccgcggc gcgagcctgg gacctgagtg taacgatgat gttaagntgt ggggcgtcac      6300
     agcacgtatc ttcgcatcga tcttcgcgcc aggagtctca gcagcggcgg ccttggccca      6360
     gatagaaagg ttggcatgtt ggtcggtaaa acaggcgaat acgaccacgc ttgtgttaaa      6420
     tgctatgctn gaagatctta atagtgtccg tcatgcactg ctacagaata gagcagctat      6480
     tgacttcttg ctgttggctc aaggacatgg atgtgaggat gtcgaaggaa tgtgctgctt      6540
     taacctcagt gatcacagcg tgtcgattca taaacaacta caatggatgc aagaacacac      6600
     gcagaagatt aaagaagaga gtgatccctt cgggaactgg ctggacggac tgtttggggg      6660
     agtgggttca tggttaaagc aattgcttaa ggctctcgcg gtagggcttg caatctttgt      6720
     gtgtattctg atctgtcttc catgctttgt aggatgcttg cagaactgcc ttgcaacgaa      6780
     tgatggaaaa gacttttgac catcggattg agtatcacag actgcgtgaa aagttgtaga      6840
     ggggtttagg ttgttgcgtt cgtgctgtaa cggggcaagg cttggccgag cacggggagt      6900
     cgggttatga cgggaaagga ctccctgttg ctctgatgnt tgcttaaagg attgcagtag      6960
     aaggtagtag gaatagtgtg ctgaaatgta tttaggatta ggcgctttgc gctgcttcgc      7020
     gatgtacggg ttaggcgtgt gtgtaagtag tatttagctt agggaggggg agatgt          7076
//
ID   SINE_RR     repbase; DNA   ; VRT   ; 252 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Western palearctic water frog DNA, short interspersed element.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   HaeIII repetitive sequence; SINE_RR; short interspersed element.
XX
OS   Rana ridibunda
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana;
OC   Pelophylax.
XX
RN   [1]
RA   Bucci S., Ragghianti M., Mancino G., Petroni G., Guerrini F.,
RA   Giampaoli S.;
RT   "Rana/Pol III: a family of SINE-like sequences in the genomes of
RT   western Palearctic water frogs.";
RL   Genome 42(3), 504-511 (1999).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of frog SINE element.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 98%.
XX
SQ   Sequence 252 BP; 56 A; 48 C; 59 G; 89 T; 0 other;
     cctagtgtgg ttgtgtacgt gtgatataca tacacttttt tggatcatat tttctattcc        60
     gctatttaat caaaaacctt tggggatcag ttaaattggg ggatagtctg tgttggtacg       120
     tgtgagagag atccaccttt ccaagttgtt ggggttcatc tcatacttct gaaggtttga       180
     gggtgctgcc tgttccatac tccccctact cctcatctag ccttttaggg gtacaaacaa       240
     tagtaattgg gg                                                           252
//
ID   GGLTR10A_LTR repbase; DNA   ; VRT   ; 313 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV2 Endogenous Retrovirus from chicken.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-313
RA   Smit A.F.;
RT   "GGLTR10A_LTR - ERV2 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   LTRs of EAVHP   Matches other GGLTR10 LTRs  from pos 140 to 280,
CC   so included in this group for ease of analysis.  cut general.
XX
SQ   Sequence 313 BP; 76 A; 72 C; 95 G; 70 T; 0 other;
     tgttgtatgc gtagcgaggg aaacgaggtg tgttgtaggc gtagcgaggg aaacgaggtg        60
     tgacgcgtgc aggttcctat gccacctgtg tgttatgcca cctgtgtgtg ccaagtgtaa       120
     cttcgtgatt ggaggaaaca cttgtattta aacacgtagc ctatagcaat aaacgccatt       180
     tgcctcactt actcctgggg tctgggtgag catctggccc cgacctggta aagggtcggt       240
     ttcgcccagc agtaagccct acacgtggac agaggacgaa caccggacga gcgaacggag       300
     actacatgca aca                                                          313
//
ID   ROn-2_ON    repbase; DNA   ; VRT   ; 395 BP.
XX
AC   AF057521;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Tilapia nilotica (Oreochromis niloticus) ROn-2 retroposon,
DE   complete sequence.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; ROn-2_ON;
KW   retroposon.
XX
OS   Oreochromis niloticus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Labroidei; Cichlidae; Oreochromis.
XX
RN   [1]
RA   Oliveira C., Wang Y., Bryden J.L., Wright M.J.;
RT   "Short interspersed repetitive elements (SINEs) from the cichlid
RT   fish, Oreochromis niloticus and their chromosomal localization by
RT   fluorescent in situ hybridization.";
RL   Unpublished.
XX
DR   Genbank; AF057521; Positions       1     395.
XX
CC   ROn-2 retroposon, found also in clones pco2b, pco4b, pco5b.
CC   Contains pol III promoter A and B boxes.
XX
SQ   Sequence 395 BP; 119 A; 84 C; 76 G; 116 T; 0 other;
     cggagcttgt ttctaacacc tgcaccagtg tggtggttag catcattgcc tcacagcaag        60
     aaggttctga gtttgaatcc aggcttcctc ccacagtcca caggcatgct gttactaaca       120
     aagcagcaaa agcaaaataa cacgcttaca aagtttatgt aactgagctg tttcaaaagg       180
     aaactacagc tccaaaatgc acctacacat ctcagtagct tttctttctt tcttttttag       240
     ccatacagcc ttttctttgt actacctggt gattaaggat gaggaaggaa agacagatta       300
     ctaatgagca ttgactgctg aaagtggaca catacagcat aagcagcaga ttgaatgtcg       360
     ttaaataatt ctgtttttct tctgtacgtg aaatt                                  395
//
ID   GGLTR8B_LTR repbase; DNA   ; VRT   ; 1071 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV3 Endogenous Retrovirus from chicken.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; GGLTR8A_LTR;
KW   GGLTR8B_LTR; LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-1071
RA   Smit A.F.;
RT   "GGLTR8B_LTR - ERV3 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000081, GG000168; 20% subst; 5bp dups.
XX
SQ   Sequence 1071 BP; 223 A; 272 C; 379 G; 193 T; 4 other;
     tgtattgggc ttacgtggca aggttttggt agcggagggg ctgcaggggt ggcctctgtg        60
     agcagagccc agcagctgcc ccatgtcaga tcagagccag ctccagctgc tccaaaaggg       120
     acccgccgct ggccagagct gagccatgag cgacgctggn tgtgcctctg ggagagcaga       180
     tttaagaaag ggaaaaactg ctgcgcaaca gcagctggga gagaggagtg agaaatgtgg       240
     agagaaacag ccctgcagnc accaaggtca gtgcagaagg agggcaggag gtgctccagg       300
     cgcggagcag aagttccctg cagcccagga gaggcccatg gnggagcagg ctgtccccct       360
     gcagcccacg ggcaccacgc ggagcagatc tccacgtgca gccatggagg agcccacggt       420
     gcagcagtgg atgtggcctg gaggaggtgc agcccatgga gagcccctgc aggagcagcc       480
     ccgggccgga gctgcagccc atggagagga gcccgcggtg gggcaggagg gctgggggag       540
     ctgctgcccg tggggacccg tgctggagca gtgcgctcct gaaggatggg ccccgtggta       600
     cggagccatg ttggagcagt gcttggagag ctgcagcctg tgggaagccc acgcaggatc       660
     agttcgggaa ggacggcatc ccgtgggagg gaccccacgt ggagcagggg cagagagtga       720
     ccatgaagga gcggcagaga cgaagcgtta tggactgacc gcagccccca ttccccgttc       780
     ccctgcaccg ctcgggggga ggaggtagaa gagggtggat ggggggaagg tgtttttagt       840
     ttgcttttag ttctcactgc tctagtctgt tagtaatagg caataaatta cattaatctc       900
     cctacgctga gtctgttttg cccgtgacgg taattggtga gtgatctccc tgtccttatc       960
     tcaacccntg agcctttttt catcgtattt tctccccctg ttcctttgag gagggggagt      1020
     gagagagcag cgtggtggag cttagctgcc catcagtgtg aaaccaccac a               1071
//
ID   BBKPN2      repbase; DNA   ; VRT   ; 238 BP.
XX
AC   X67745;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   B.baikalensis DNA Kpn2 I tandem repeats (238 bp).
XX
KW   Satellite; Simple Repeat; BBKPN2; Kpn2 I repetitive sequence;
KW   tandem repeat.
XX
OS   Batrachocottus baicalensis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Scorpaeniformes;
OC   Cottoidei; Cottidae; Batrachocottus.
XX
RN   [1]
RP   1-238
RA   Slobodyanyuk Y.S.;
RT   "Kpn2 I tandem repeats from two species of baikalian sculpins
RT   (fishes).";
RL   Unpublished.
XX
RN   [2]
RP   1-238
RA   Slobodyanyuk Ya S.;
RT   "BBKPN2.";
RL   Direct Submission to Genbank (20-OCT-1992)S. Slobodyanyuk Ya,
RL   Limnological Inst, Siberian Division, Ulan-Batorskaya 3, Irkutsk
RL   664033, USSR.
XX
DR   GenBank; X67745; Positions       1     238.
XX
SQ   Sequence 238 BP; 50 A; 52 C; 56 G; 80 T; 0 other;
     tccggatcga ttggtaccaa ccccgaggct ctaggacctt gggaagtgcc atttctgaaa        60
     aatgcgtttt cagctggagt ggtggtgcag tggtagtgcc cccgcctttg gaacacaagg       120
     ttgagtgttc gaatcccact catggcaatt ttctttttct tcacatttta tttcttaact       180
     ttctttctga aggtcgtaga gacttgagag ttgtatttct ccccactaat taggtgat         238
//
ID   Gypsy1-LTR_GA repbase; DNA   ; VRT   ; 527 BP.
XX
AC   AC146545;
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   05-FEB-2004 (Rel. 9.01, Last updated, Version 1)
XX
DE   Long terminal repeat of Gypsy1_GA retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   Gypsy retrotransposon; Gypsy1-I_GA; Gypsy1-LTR_GA; LTR;
KW   Tf1 group.
XX
OS   Gasterosteus aculeatus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Gasterosteiformes;
OC   Gasterosteidae; Gasterosteus.
XX
RN   [1]
RP   1-527
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy1_GA, a self-primed Gypsy LTR retrotransposon from the fish
RT   Gasterosteus aculeatus.";
RL   Repbase Reports 4(1), 25-25 (2004).
XX
DR   Genbank; AC146545; Positions   43889   44415.
XX
CC   Gypsy1-LTR_GA is a long terminal repeat from the Gypsy1_GA LTR
CC   retrotransposon.
XX
SQ   Sequence 527 BP; 85 A; 161 C; 107 G; 174 T; 0 other;
     tgttatgtcc agccctgagt attaagttaa gttggcgggc tatttataat tcttcggtta        60
     tgtgttattg tttactcacc tctcgtttca gattcctcac tccctccctc aggtgtgtgg       120
     gttccacctg ggtgattgtc agcccctccc tgattgtttg cacctggccc tcatcacccg       180
     gtgtatttag tctgtgggtt cctgtcctct gttgccagtt cgtctttgat acaatgttcc       240
     tagcgttcca gcatttactc ctgatagcct ccctgttacc gacccctgcc tggttaacgc       300
     gtcacgtctc tgccttttcc ctgccggata ccttgcctgg tgatcgactg cctgcccgtg       360
     taccgacctt ggaccggaac gtttacgacc tttgcaccta cctgcctcct gtcgaattct       420
     tacacccgtg tttgtactgc catccaaacg gtaaaattgg tttactgcaa ctacttgtgt       480
     ctccgagtcg tgcaattgaa cccacaccct tgtctgcacc ccttaca                     527
//
ID   SINE_AFC    repbase; DNA   ; VRT   ; 342 BP.
XX
AC   .
XX
DT   20-JUL-1999 (Rel. 4.06, Created)
DT   20-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   SINE element from Cichlids - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; AFC family;
KW   SINE_AFC; Repetitive DNA.
XX
OS   Lepidiolamprologus elongatus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Labroidei; Cichlidae; Lepidiolamprologus.
XX
RN   [1]
RA   Takahashi K., Okada N.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (14-1997). Kazuhiko
RL   Takahashi, Tokyo Institute of Technology, Faculty of Bioscience
RL   and Biotechnology; 4259 Nagatsuta-cho, Midori-ku, Yokohama,
RL   Kanagawa 226, Japan (E-mail:kazuhiko@bio.titech.ac.jp,
RL   Tel:+81-45-924-5744, Fax:+81-45-924-5835).
XX
RN   [2]
RA   Takahashi K., Terai Y., Nishida M., Okada N.;
RT   "A Novel Family of Short Interspersed Repetitive Elements (SINEs)
RT   from Cichlids: The Patterns of Insertion of SINEs at Orthologous
RT   Loci Support the Proposed Monophyly of Four Major Groups of
RT   Cichlid Fishes in Lake Tanganyika.";
RL   Mol. Biol. Evol 15(4), 391-407 (1998).
XX
RN   [3]
RA   Terai Y., Takahashi K., Okada N.;
RT   "SINE cousins: The 3'-end tails of the two oldest and distantly
RT   related families of SINEs are descended from the 3' ends of LINEs
RT   with the same genealogical origin.";
RL   Mol. Biol. Evol 15, 1460-1471 (1998).
XX
RN   [4]
RP   1-342
RA   Jurka J.;
RT   "SINE_AFC.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [4] (Consensus)
XX
SQ   Sequence 342 BP; 71 A; 76 C; 105 G; 86 T; 4 other;
     ttaggggcga tcgtggctca agagttggga gttcgccttg taatcggaag gttgccggtt        60
     cgagccccgg ctcggacagt ctcggtcgtt gtgtccttgg gcaagacact tcacccattg       120
     cctactggtg gtggccagag gggccgatgg cgcgagtgta tggcagcctc gcctctgtca       180
     gtscgcccca gggcagctgt ggctacaact gtagcttgcc wccaccagtg tgtgaatgtg       240
     agagtgaatg aatggatgaa tgnngaattg taaagcgctt tggggtcctt agggactaga       300
     aaagcgctat ataaatacag gccatttacc attattatta tt                          342
//
ID   JH12_XL     repbase; DNA   ; VRT   ; 326 BP.
XX
AC   X59370;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   X.laevis repetitive element JH12.
XX
KW   JH12_XL; Repetitive element JH12; XLJH12.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-326
RA   Deen M.P.;
RT   "JH12_XL.";
RL   Direct Submission to Genbank (03-MAY-1991)P.M.T. Deen, Univ of
RL   Nijmegen, Toernnooiveld, 6525 ED Nijmegen, THE NETHERLANDS.
XX
RN   [2]
RP   1-326
RA   Deen M.P., Terwel D., Bussemakers J.M., Roubos W.E.,
RA   Martens J.G.;
RT   "Comparative analysis of the transcriptionally active
RT   Proopiomelanocortin genes A and B of Xenopus laevis.";
RL   Unpublished.
XX
RN   [3]
RP   1-326
RA   Deen M.P., Roubos W.E., Martens J.G.;
RT   "Presence of Vi-transposon-like elements in the
RT   proopiomelanocortin gene A of Xenopus laevis does not affect gene
RT   activity.";
RL   Mol. Gen. Genet 230, 491-493 (1991).
XX
DR   GenBank; X59370; Positions    2471    2796.
XX
SQ   Sequence 326 BP; 107 A; 65 C; 49 G; 105 T; 0 other;
     cattcacagg catgggattc attatccgga aaccaattat ccagaaagct caggatctcc        60
     catagactcc attttatcca agtaatccaa gcttctaaaa actatttcct ttttctcagt       120
     gataataaaa cagtcgcttg tacttgatcc caactaagat ataattaatc tttattggaa       180
     gcaaaaccag cctattggct ttatttaatg tttacatgat tttctagtag acttaaggta       240
     tgaagatcaa aattacaaaa agatctgtta tctggaaaac tccaggtccc aagcattctg       300
     gataacgggt cctatgtctg tattat                                            326
//
ID   MER30       repbase; DNA   ; VRT   ; 230 BP.
XX
AC   .
XX
DT   21-APR-1997 (Rel. 2.03, Created)
DT   21-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER30;
KW   Repetitive sequence.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-230
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Fragments of MER30 have been found in frog, snake and chicken.
XX
SQ   Sequence 230 BP; 70 A; 51 C; 55 G; 51 T; 3 other;
     caggggtgtc caatcttttg gcttccctgg gccacactgg aagaagaaga attgtcttgg        60
     gccacacata aaatacacta acactaacga tagctgatga gctwaaaaaa aaaaaamaat       120
     cccamaaaaa tctcataatg ttttaagaaa gtttacgaat ttgtgttggg ccgcattcaa       180
     agccatcctg ggccgcgtgc ggcccgcggg ccgcgggttg gacaagcttg                  230
//
ID   PTR_XL      repbase; DNA   ; VRT   ; 364 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Xenopus paired tandem repeat.
XX
KW   PTR_XL; Repeat region; tandem repeat.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RA   Carroll D., Garrett E.J., Lam S.B.;
RT   "Isolated clusters of paired tandemly repeated sequences in the
RT   Xenopus laevis genome.";
RL   Mol. Cell. Biol 4(2), 254-259 (1984).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of Xenopus tandem repeat.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 364 BP; 134 A; 72 C; 61 G; 97 T; 0 other;
     gcatttatct cccacatatc attaggtacc aaaaaaacac cctaaatatg aacgccaggg        60
     gtccactgaa cagtttgatg cccaatatgc ataggtttac caaagtatgt ggcatgtaga       120
     gaccccaaaa tgaaaatagt gcatacaaat tttcatgctg cacttagctc tgcaaataaa       180
     acacctggta tgtgtattat gtggcataag acaaagtaag agacccagaa aaccatatat       240
     ttttggaaag tacacattct gacgaatcca aaatgggtaa atatgtcttt ctactgcaaa       300
     ctaccaaact gcaaagctat gctaaacata gcggttttta tgaaatttct gaaaattgtc       360
     caaa                                                                    364
//
ID   CR1L        repbase; DNA   ; VRT   ; 261 BP.
XX
AC   .
XX
DT   22-JUL-1999 (Rel. 4.06, Created)
DT   22-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   CR1-like 3'-fragment - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1L.
XX
OS   Vertebrata
OC   Eukaryota; Metazoa; Chordata; Craniata.
XX
RN   [1]
RP   1-261
RA   Jurka J.;
RT   "CR1L.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [1] (Consensus)
XX
CC   Distantly similar to 3'-ends of CR1POL, PSLINE,CR1_GG, CAM1_GG
CC   CR1_GD and L3. It may represent a SINE-like ancient element
CC   associated with CR1-like LINE.
XX
SQ   Sequence 261 BP; 56 A; 38 C; 89 G; 70 T; 8 other;
     gratgatggg gaatggcctc aggntgnrcc agggaaggtt cagattggat nttaggaaaa        60
     atttcttcnc cgagagagcg gtgaagcatt ggcacagnct gcccagggag gtggtggagt       120
     caccgtccct ggaggtgttc aagaactgtg gagatgtggc actgagggac atggttagtg       180
     gggnatggtg gtgatgggtt gatggttgga cttggtgatc ttagaggtct ttttccaacc       240
     ttaatgattc tatgattcta t                                                 261
//
ID   TC1_RT      repbase; DNA   ; VRT   ; 1677 BP.
XX
AC   .
XX
DT   05-JUL-2002 (Rel. 7.06, Created)
DT   05-JUL-2002 (Rel. 7.06, Last updated, Version 1)
XX
DE   Tc1-like transposon present in R. temporaria and other aquatic
DE   species - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; TC1_RT;
KW   Tc1-like transposon; transposase.
XX
OS   Rana temporaria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana;
OC   Rana.
XX
RN   [1]
RA   Leaver J.M.;
RT   "A family of Tc1-like transposons from the genomes of fishes and
RT   frogs: evidence for horizontal transmission.";
RL   Gene 271(2), 203-214 (2001).
XX
RN   [2]
RP   1-1677
RA   Jurka J.;
RT   "Consensus of Tc1-like transposon.";
RL   Direct Submission to Repbase Update (24-JUN-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1677 BP; 563 A; 325 C; 355 G; 412 T; 22 other;
     tacagtgcct tgcataagta ttcacccccc ttggcttttt acctattttg ttacattaca        60
     gcctttagtt caaatgtttt tttatctgaa ttatatgtga tggatcagac acacaatagt       120
     ctaagttggt gaagtaaaat tagaaaaaat tacttataca taaaactatt tttcagaaat       180
     aaaaaactga taattggcat gtgcgtatgt attcaccccc tttgttatga agcccataaa       240
     taagctctgg tgcaaccaat taccttcaga agtcacataa ttagtgaaat ratgtccacc       300
     tgtgtgcayt atctaagtgt cacatgatct gtcatatgat ctcagtatac atatacacac       360
     ctgttttgaa aggccccaga ggctgcaaca ccactaagca agaggcacca ctaaccaaac       420
     actaccatga agaccaagga rctctccaaa caagtaaggg acaatgttgt tgagaagtac       480
     aagtcagggt taggttataa aaaaaaatta tccaaatctt tgaacatccc taggagcacc       540
     atcaaatcta tcataaccaa atggaaagaa tatggcacaa cagcaaacct gccaagagag       600
     ggccgcacac caaaactcac ggaccnggca aggagggcat taatcagaga ggcaacaaag       660
     agaccaaagg taaccctgga ggagctgcag agctccacag cagagaytgg agtatctgtc       720
     cataggacsa ctataagccg tacactccat agagytgggc tttatggaag agtggccaga       780
     araaaangcc attgctttaa gcaaaaaata aaaaaacacg tttggagttt gcsaaaaggc       840
     atgtgggaga ctccccaaac atatggaaga aggtgctctg gtcagatgag actaaaattg       900
     aactttttgg ccatcaagga aaacgctatg tctggcgcaa acccaacaca tcacatcacc       960
     caaagaacac catccccaca gtgaaacatg gtggtggcag catcatgctg tggggatgtt      1020
     tttcatcagc agggactggg aaactggtca garttgaagg aaagatggat ggtgctaaat      1080
     acagggaaat tcttgaggaa aacctgttyc actctgtcag agatttgaga ctgggacgga      1140
     ggttcacctt ccagcaggac aatgacccta aacatactgc taaagcaaca cttgagtggt      1200
     ttaaggggaa acatgtaaat gtcttggaat ggcctagtca aagcccagac ctcaatccaa      1260
     tagagaatct gtggtaagac ttaaagattg ctgttcacaa gcggnaamcc atccaacttg      1320
     aaggagctgg agcagttttg cmaggaggaa tgggcaaaaa tcccagtggy tagatgtgcc      1380
     aagctcatag agacwtatcc aaagagactt ggagctgtaa ttgctgcaaa aggtggctct      1440
     acaaagtatt gactttaggg gggtgaatag ttatgcacat tcamgttttc tgttattttt      1500
     tgtcctattt sttgtttgyt tcacaataaa aaataaatta catcttcaaa gttgtgggca      1560
     tgttctgtaa atttnaaatg atgcaaatcc tcacaacaat ccatgttaat tccaggttgt      1620
     gaggcaacaa aatasgaaaa atgccaaggt gggtgaatac ttatgcaagg cactgta         1677
//
ID   CR1-Y       repbase; DNA   ; VRT   ; 4513 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   CR1 Non-LTR Retrotransposon from chicken.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-4513
RA   Smit A.F.;
RT   "CR1-Y - CR1 Non-LTR Retrotransposon from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   ORF1 incomplete (bp < 619-1458), ORF2 (1380-4427). Mixture of
CC   CR1-Y1 to 4 probably. Y1 3' end. 10.5% subst.
XX
SQ   Sequence 4513 BP; 1077 A; 999 C; 1484 G; 929 T; 24 other;
     ctgtgccacc atgggcactg atgcagtgtg ggaggagtca ggagtgatgg cagccagcnc        60
     gccgggcgca caaaggcggc tccagcaggg ggcgcagtga cccaggactg cagtacagaa       120
     tgagtgaaca gggcgtggct tgtcagaagg ncgtgctcgg cagttagcgc gggcagttca       180
     cgcggggcag ggagggtggg cagggcgggc cctctttttc tctctctcct cttcctttga       240
     gaactctagg gtgttaccgc ctctttatac tatcatggtg ggcacccgtc gcagcggccg       300
     ggctgaggca gcgacgcaga ccgagggnac acagcctctc tgggctgatg tgtgcaccca       360
     ggtggacaac ccanggagtg aggcagcagt ccaaactgtt gactgcgggg agctccgtaa       420
     tttggaggtc cccctgggtc ctgagggagg agagggctgt catggctgca ggtgtgtcct       480
     gctcaaggag ctgcttgagc agatggccag gctgcagcga gaaatcagca gcctgagggg       540
     ctcccgggaa tctctgaggg agacagatag gaggtgatgt gaacctactc ccactgcaga       600
     cacgcagccn cctcctaagt ccctgcaagt ggaagtagcc aatccagctg ctcacctgca       660
     ggacagaggn ctagacagcc cgcgagagga aaggggctgg accctcgtct ctgctcgaag       720
     cagaaggagc gtctgccccc agcacccaca gtcccaccaa cccctgcagt gtcccctgca       780
     gtgtccctga gtaatagatt cgaggctctc gggccggaca gggatgaggg tctggaaagc       840
     agtccaaacc catgccctga gaagcacatt gagaatacag ggagtaacaa gcacagggag       900
     cggggccggt cagggcactg catcaatacc agtgccacca aaaaagggcg gagagtctta       960
     gtaattgggg actccttgct ggggggcact gaggctccca tttgccgccc ggataatctc      1020
     tccagagagg tgtgctgtct tccaggggcg cgtgttagag acattaggaa ggctctacca      1080
     cagctcatta aaccggaaga ctactatcct tttattgtca ttcaggctgg gtcccgggat      1140
     gctgcaatga ggaaactaaa gaatgttaaa aaggactttg catcccttgg aaagatgttg      1200
     aagggatcag gggtgcaggt agtgttctcc tctgtccttc cgatgggtag ctgggaccca      1260
     ggaagangga ggagaacatg tcaggtaaat gactggctga gggggtggtg tcttgatcaa      1320
     ggctttgggt attttgatct cgggcaggcc tttgagaaac cgggtatgtg ggctcctgat      1380
     ggactccgac tgagcaagtg gggcacaagt gttctgggga gcaagctctc tggattgatt      1440
     accagggctt taaactaggt tcgaaggggg aagggagggg agttagatgt gacagagaag      1500
     ggctgaggga tgttgtcact gttggagatt gcagggaaaa acctctgagt tgtcccatag      1560
     gatcgtgcga gggctcctca gagaaggtca cgttgccgat accccgtcca aaatcttctt      1620
     gcgtccctct aggggtaact gcacctgctg cttccctaaa gtgcctgtat accaatgcgc      1680
     gcagcatggg aaataaacag gatgagctgg agatctgtgt gcggtcgcag ggccatgatc      1740
     tcattgcagt cacggagacg tggtgggaca gctcgcatga ctggaatgct gtcatggagg      1800
     gctatgtcct ttttaggaaa gacaggctgg ggaagcgagg tggaggagtt gccctttatg      1860
     tgagagagca actagaatgt attgagctcc acctggggga gggtgaagaa cgtgtggaga      1920
     gcttgtgggt gagaattaag gggcgggcta gtatgggtga caccgttgtg ggngtgtact      1980
     acaggccacc ngatcaggag gangaagtcg atgaggcctt ctacaagcag ctggaagtag      2040
     cctcgcaatc ccgggcactg gttctcatgg gggacttcaa tcatccagat atctgttggg      2100
     taagcaacac ggccaggcac acgcggtcca gacggttcct gcaatgcgtt gaagataatt      2160
     ttctgacgca ggtggtggag gagccaacga ggcggggggt gcttctggac cttgttctta      2220
     ccaacaggga tgggcttgtt agggatgtga aggctggggg cagcttggga tgcagcgatc      2280
     atgagatggt ggagttcaag atcttgngtg gaagaagcaa ggcaaaaagt aggattgcta      2340
     ccctggactt cnggagagcc aacttcgacc tcttcnggga cctacttgga ggtatcccat      2400
     gggctagagt gttagaaggt aagggggccc gtgagagctg gncagcattt aaacagcact      2460
     tcttccaagc tcaagatcgg tgcatcccta agagtaggaa atcggggaag ggnggcagga      2520
     gacctgcgtg gatgagcaag gagctcatgg ataagatcaa agggaagaag aaggtctatg      2580
     aaatgtggaa aaagggcctg tccncttggg aggagtatag gagtgttgtc agggcctgca      2640
     gggatgcgac gaggaaggct aaagcccacc tggaattgaa nctggcaaag gagataaagg      2700
     ataacaagaa aggttttttt aagtatgtca acagtaaaag gaagactagg gaaaatgtgg      2760
     gtcccctgct gaacgagggg ggtgtcctgg taacagggga tgctgagaag gcggagatgc      2820
     tgaacgcctt ctttgcttcg gtcttcactn caaagactcc ccctcgggan tcccggaccc      2880
     tggaggtaag agagagagtc tgggaaatgg agagcttccc tctggttgag gaggggntgg      2940
     tccgagagcg tctaggcggg atcaatgtgc acaaatccat gggccccgat gggatgcatc      3000
     cacgtgtgct gagggagctg gcagaggtga ttgctgaacc gctctctatc atctttgana      3060
     ggtcttggag aacgggagag gtgcctgaag actggaggat agccaatgtc actccggtct      3120
     tcaaaaaggg caagaaggag gatccgggaa actacaggcc agtcagcctc acctccgtcc      3180
     ctggaaaggt gatggaacag cttgttctgg atgccatctc caagcaattg gaagagaaga      3240
     aggtcatcag gagtagtcag catggattca ccaaggggaa atcatgctcg accaacctng      3300
     tagccttcta tgatggcatc accagctggg tagatggggg gagagcagtg gatgtcgtct      3360
     accttgactt cagcaaggct tttgatactg tctcccacga catcctgata atgaagctga      3420
     gaaagtgtgg gatagatgag tggacggtga ggtgggttga gaactggctg actggccgag      3480
     ctcagagggt tgtgatcggc ggtgcagagt ctggttggag acctgtgact agcggtgttc      3540
     cccaggggtc ggtgctgggt ccggtcttgt tcaatatctt catcgacgac cttgatgagg      3600
     ggatagtgtc caccctcagc aagtacgccg atgatacaaa gctgggagga gtggctgaca      3660
     caccngaagg ctgtgctgcc attcagcaag acctggacag actggagagc tgggcagcaa      3720
     naaaccagat gaggtttaac aaaagcaagt gtagagtctt gcacctggga aggaataacc      3780
     gcaagtatca gtacaggttg gggcatgacc tgctggagag gagctctgcg gagaaggacc      3840
     tgggggtcct ggtggacgac aggttggcca tgagccagca gtgtgccctg gtggccaaga      3900
     aggccaatgg gatcctgggg tgcattaaaa ggagcgtggc cagcaggtca agggaggtga      3960
     tcctccccct ctactctgcc ctggtcaggc ctcacctgga gtactgtatc cagttctggg      4020
     ctccccggta caaaaaagac agggatctcc tggagagagt ccagcggagg gccacaaaga      4080
     tgataaaggg cctggagcat ctcccctatg aggaaaggct gagcgacctg ggtctgttca      4140
     gccttgagaa aagaagactc agaggggatc ttattaatgt ttataaatat cttaagtgtg      4200
     ggagtcaaag ggacatggcc aacctctttt cagcggtctg tggggacagg acaaggggaa      4260
     acggccataa actggagcat aggaagttcc gcaccaatat gcgaaggaac ttcttcacag      4320
     tgagggtgac ggagcactgg aacaggctgc ccagggaggt tgtggattct ccttctctgg      4380
     agatattcaa gacccgcctg gacgcctacc tgtgcagcct gctgtagggg gcctgctttg      4440
     caggggggtt ggactcgatg atctctggag gtcccttcca gcccctacaa ttctgtgatt      4500
     ctgtgattct gtg                                                         4513
//
ID   RSV_I       repbase; DNA   ; VRT   ; 6976 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Internal portion of ERV2 Endogenous Retrovirus from chicken.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-6976
RA   Smit A.F.;
RT   "RSV_I - ERV2 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Rous sarcoma or avian leukosis virus internal sequence. 1 copy
CC   in chicken genome ORFs 280-2385, 2325-5090, 4945-6810 erv.
XX
SQ   Sequence 6976 BP; 1696 A; 1696 C; 2015 G; 1569 T; 0 other;
     tttggtgacc ccgacgtgat cgttagggaa tagtggtcgg ccacaggcgg cgtggcgatc        60
     ctgccctcat ccgtctcgct taacggagcg aggacgatga ccctagtaga gggggctgcg       120
     gcttaggagg gcagaagctg agtgacgtcg gagggagctc cacggccggg ggccaagata       180
     acctaccgag aactcagaga gtcgttggaa gacgggaagg aagcccgacg actgagcagt       240
     ccaccccagg cgcgattccg gtcgcccggt ggatcaagca tggaagccgt cataaaggtg       300
     atttcgtccg cgtgtaaaac ctattgcggg aaaacctctc cttctaagaa ggaaataggg       360
     gccatgttgt ccctgttaca aaaggaaggg ttgcttatgt ccctctcaga cttatattcc       420
     ccggggtcct gggatcccat taccgcggca ctcacccagc gggcaatggt acttgggaaa       480
     tcgggagagt taaaaacctg gggattggtt ttgggggcat tgaaggcggc tcgagaggaa       540
     caggttacat ctgagcaagc aaagttttgg ttgggattag ggggagggag ggtctctccc       600
     ccaggtccgg agtgcatcga gaaaccagca acggagcggc gaatcgacaa gggggaggaa       660
     gtgggagaaa caactgtgca gcgagatgcg aagatggcgc cggaggaaac ggccacacct       720
     aaaaccgttg gcacatcctg ctatcattgc ggaacagcta ttggctgtaa ttgcgccaca       780
     gcctcggccc ctcctcctcc ttatgtgggg agtggtttgt atccttccct ggcgggggtg       840
     ggagagcagc agggccaggg gggtgacaca cctcgggggg cggaacagcc aagggcggag       900
     ccagggcacg cgggtcaggc ccctgggccg gccctgactg actgggcaag gatcagggag       960
     gagcttgcga gtacaggtcc gcccgtggtg gccatgcctg tagtgattaa gacagaggga      1020
     cccgcctgga cccctctgga gccaaaattg atcacaagac tggctgatac ggtcaggacc      1080
     aagggcttac gatccccgat cactatggca gaagtggaag cgcttatgtc ctccccgctg      1140
     ctgccgcatg acgtcacgaa tctaatgaga gttattttag gacctgcccc atatgcctta      1200
     tggatggacg cttggggagt ccaactacag acggttatag cggcagccac tcgcgacccc      1260
     cgacacccag cgaacggtca agggcggggg gaacggacta acttggatcg tttaaagggt      1320
     ttggcggatg gaatggccgg caatccagag ggtcaggctg cattattaag accgggggaa      1380
     ctggttgcta ttacggcgtc ggctctccag gcgtttagag aggtcgctcg gttggcggaa      1440
     cccacagacc cgtgggcgga aattacgcag ggaccatctg agtcctttgt ggattttgcc      1500
     aatcgtctta taaaggcggt tgaagggtca gatctcccac cttccgcgcg ggctccggtg      1560
     atcattgact gctttaggca gaagtcacag ccagatatcc agcagcttat acgggcagca      1620
     ccctccacgc tgaccacccc aggagagata atcaaatatg tgctagacag gcagaagact      1680
     gcccctctta cggatcgagg catagccgcg gccatgtcgt ctgctattca gcccttagtt      1740
     atggcagtag tcaatagaga gagggatgga caaactgggt cgggtggtcg tgcccgaggg      1800
     ctctgctaca cttgtggatc cccgggacat tatcaggcgc agtgcccgaa aaaacgaaag      1860
     tcaggaaaca gccgtgagcg atgtcagttg tgtgacggga tgggacacaa cgctaaacag      1920
     tgcagaaggc gggatggcaa ccagggccaa cgcccaggaa gaggcctctc ttcggggccg      1980
     tggcccgtct ctcagcagcc tgccgtctcg ttagcgatgg caatggaaca taaagatcgc      2040
     cccttggtta gggtcatttt gactaacact gggagtcatc cggtcaaaca gcgttcggtg      2100
     tatatcaccg cgctgttgga ctctggagcg gacatcacta ttatttcaga ggaggactgg      2160
     cccaccgatt ggccagtgat ggaggccgcg aacccgcaga tccatgggat aggaggggga      2220
     attcccatgc gaaaatcccg ggatatgata gaggtggggg ttattaaccg agacgggtct      2280
     ttggagcgac ccctgctcct cttccccgca gtagctatgg ttagagggag tatcctagga      2340
     agagattgtc tgcagggcct agggctccgc ttgacaaatt tatagggagg gccactgttc      2400
     ttactgttgc gctacatctg gctattccgc tcaaatggaa gccagaccac acgcctgtgt      2460
     ggattgacca gtggcccctt cctgaaggta aacttgtagc gctaacgcaa ttagtggaaa      2520
     aagaattaca gttaggacat atagaacctt cacttagttg ttggaacaca cctgtctttg      2580
     tgatccggaa ggcttccggg tcttatcgct tattgcatga cttgcgcgct gttaacgcca      2640
     agcttgttcc ttttggggcc gtccaacagg gggcgccagt tctctccgcg ctcccgcgtg      2700
     gctggcccct gatggtccta gacctcaagg attgcttctt ttctattcct cttgcggaac      2760
     aagatcgcga agcttttgca tttacgctcc cctctgtgaa taaccaggcc cccgctcgaa      2820
     gattccaatg gaaggtcttg ccccaaggga tgacctgttc tcccactatc tgtcagttgg      2880
     tagtgggtca ggtacttgag cccttgcgac tcaagcaccc atctctgtgc atgttgcatt      2940
     atatggatga tcttttgcta gccgcctcaa gtcatgatgg gttggaagcg gcaggggagg      3000
     aggttatcag tacattggaa agagccgggt tcaccatttc gcctgataag atccagaggg      3060
     agcccggagt acaatatctt gggtacaagt taggcagtac gtatgtagca cccgtaggcc      3120
     tggtagcaga acccaggata gccaccttgt gggatgttca aaagctggtg gggtcacttc      3180
     agtggcttcg cccagcgtta ggaatcccgc cacgactgat gggccccttt tatgagcagt      3240
     tacgagggtc agatcctaac gaggcgaggg aatggaatct agacatgaaa atggcctgga      3300
     gagagatcgt acagcttagc accactgctg ccttggaacg atgggaccct gccctgcctc      3360
     tggaaggggc ggtcgctaga tgtgaacagg gggcaatagg ggtcctggga cagggactgt      3420
     ccacacaccc aaggccatgc ttgtggttat tctccaccca acccaccaag gcgtttactg      3480
     cttggttaga agtgctcacc cttttgatta ctaagctacg tgcttcggca gtgcgaacct      3540
     ttggcaagga ggttgatatc ctcctgttgc ctgcatgctt tcgggaggac cttccgctcc      3600
     cggaggggat cctgttagcc cttaaggggt ttgcaggaaa aatcaggagt agtgacacgc      3660
     catctatttt tgacattgcg cgcccactgc atgtttctct gaaagtgagg gttaccgacc      3720
     accctgtacc gggacccact gtctttaccg acgcctcctc aagcacccat aagggggtgg      3780
     tagtctggag ggagggccca aggtgggaga taaaagaaat agctgatttg ggggcaagtg      3840
     tacaacaact ggaagcacgc gctgtggcca tggcacttct gctgtggccg acaacgccca      3900
     ctaatgtagt gactgactcc gcgtttgttg cgaaaatgtt actcaagatg ggacaggggg      3960
     gagtcccgtc tacagcggcg gcttttattt tagaggatgc gttaagccaa aggtcagcca      4020
     tggccgccgt tctccacgtg cggagtcatt ctgaagtgcc agggtttttc acagaaggaa      4080
     atgacgtggc agatagccaa gccacctttc aagcgtatcc cttgagagag gctaaagatc      4140
     ttcatactgc tctccatatt ggaccccgcg cgctatccaa agcgtgtaat atatctatgc      4200
     agcaggctag ggaggttgtt cagacctgcc cgcattgtaa ttcagcccct gcgttggagg      4260
     ccggggtaaa ccctaggggt ttgggacccc tacagatatg gcagacagac tttacgcttg      4320
     agcctagaat ggccccccgt tcctggctcg ctgttactgt ggataccgcc tcatcggcga      4380
     tagtcgtaac tcagcatggc cgtgtcacat cggttgctgc acaacatcat tgggccacgg      4440
     ctatcgccgt tttgggaaga ccaaaggcca taaaaacaga taacgggtcc tgcttcacgt      4500
     ctaaatccac gcgagaatgg ctcgcgagat gggggatagc acacaccacc gggattccgg      4560
     gtaattccca gggtcaagct atggtagagc gggccaaccg gctcctgaaa gataagatcc      4620
     gtgtgcttgc ggagggggac ggctttatga aaagaatccc caccagcaaa cagggggaac      4680
     tactagccaa ggcaatgtat gccctcaatc actttgagcg tggtgaaaac acaaaaacac      4740
     cgatacaaaa acactggaga cctaccgttc ttacagaagg acccccggtt aaaatacgaa      4800
     tagagacagg ggagtgggaa aaaggatgga acgtgctggt ctggggacga ggttatgccg      4860
     ctgtgaaaaa cagggacact gataaggtta tttgggtacc ctctcgaaaa gttaaaccgg      4920
     acatcaccca aaaggatgag gtgactaaga aagatgaggc gagccctctt tttgcaggca      4980
     tttctgactg gataccctgg ggagacaagc aagaaggact ccaaggagaa accgctagca      5040
     acaagcaaga aagacccgga gaagacaccc ttgctgccaa cgagagttaa ttatattctc      5100
     attattggtg tcctggtctt gtgtgaggtt acgggggtaa gagctgatgt tcacttactc      5160
     gagcagccag ggaacctttg gattacatgg gccaaccgta caggccaaac ggatttctgc      5220
     ctctctacac agtcagccac ctcccctttt caaacatgtt tgataggtat cccgtcccct      5280
     atttccgaag gtgattttaa gggatacgtc tctgataatt gcaccacctt gggaactgac      5340
     cggttagtct cgtcagccag cattaccggc ggccctgaca acagcaccac cctcacttat      5400
     cgaaaggttt catgcttgct gttaaagctg aatgtctcta tgtgggatga gccaccggaa      5460
     ctacagctgc taggttccca gtctctccct aacattacta atattactca gatttctggt      5520
     gtaactgggg gatgcgtagg cttcacccca cactccaatc caagtggtgt ttacgggtgg      5580
     gaccggagac aggttacaca caacttcttg atcgccccgt gggtcaatcc tttctttaac      5640
     agcgcttcta actccacgga accgtttacg gtggtgacag cggatagaca caatcttttt      5700
     atggggagtg agtactgcgg tgcatatggc tacagatttt gggaaatata taattgctca      5760
     cacagatttg ataattttga tatttacacc tgtggagatg tgcagacagt caaatccccc      5820
     gaaaaacagt gtgtgggggg aggaggtata tgggttaatc aatcaaagga aattaatgag      5880
     acagagccgt tcagttttac tgcgaactgt acagctagta atttgggtaa tgtcagcgga      5940
     tgttgtggaa aaacgatcac gattctccca tcaggggcgt ggatcgacag cacacaaggt      6000
     agtttcacca aaccaaaagc gctaccaccc gcaattttcc tcatttgtgg ggatcgcgca      6060
     tggcaaggaa ttcccagtcg tccggtaggg ggcccctgct atttaggcaa gcttaccatg      6120
     ttagcaccta accatacaga tattctcaag gtgcttgcca attcatcgcg gacaggtata      6180
     agacgtaaac gaagcacctc acacctggat gatacatgct cagatgaagt gcagctttgg      6240
     ggtcctacag caagaatctt tgcatctatc ttagccccgg gggtagcagc tgcgcaagcc      6300
     ttaagagaaa ttgagagact agcctgttgg tccgttaaac aggctaactt gacaacatca      6360
     ctcctcgggg acttattgga tgatgtcacg agtattcgac acgcggtcct gcagaaccga      6420
     gcggctattg acttcttgct tctagctcac ggccatggct gtgaggacgt tgccggaatg      6480
     tgttgtttca atctgagtga tcacagtgag tctatacaga agaagttcca gctaatgaag      6540
     gaacatgtca ataagatcgg cgtggacagc gacccaatcg gaagttggct gcgaggatta      6600
     ttcgggggaa taggggaatg ggccgttcat ttgctgaaag gactgctttt ggggcttgta      6660
     gttattttgt tgctagtagt gtgcctgcct tgccttttgc aaattgtgtc cagtagcatc      6720
     cgaaagatga ttaataattc aatcagctat cacacggaat atcagaagtt gcaaaaggct      6780
     tgtaggcagc ccgaaaatgg agcagtgtaa agcagtacat gggtggtggt atgaaacttg      6840
     cgaatcgggc tgtaacgggg caaggcttga ctgaggggac catagtatgt ataggcgaaa      6900
     ggcggggctt cggttgtacg cggttaggag tcccctcagg atacagtagt tgcgcttatg      6960
     catagggagg gggaaa                                                      6976
//
ID   HER1_HJ     repbase; DNA   ; VRT   ; 856 BP.
XX
AC   AB027741;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Heterodontus japonicus DNA, HER1 LINE.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; HER1 LINE element;
KW   HER1_HJ.
XX
OS   Heterodontus japonicus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
OC   Chondrichthyes; Elasmobranchii; Galeomorphii; Heterodontoidea;
OC   Heterodontiformes; Heterodontidae; Heterodontus.
XX
RN   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs.";
RL   Mol. Biol. Evol 16(9), 1238-1250 (1999).
XX
DR   Genbank; AB027741; Positions       1     856.
XX
SQ   Sequence 856 BP; 195 A; 159 C; 269 G; 233 T; 0 other;
     ttgtccatag atctctgaag gcagaagggc aggttaatat ggtggtgaaa aaggcatatg        60
     ggacacttgc ctttatcaat cgaggcatag attacaaaag cagggaggtc atgttggagt       120
     tgtaccgaac tttggtaagg ccacagctgg agtactgtgt gcaattctgg tcgccacatc       180
     ccaggaagga tgccattgca ctggagaggg tgcagaggcg attcaccagg atgttgcctc       240
     ggatggaaca tttaagctat gaagagaggt tggataggct tgggttgttt acgctggcgc       300
     tgagaagact gaggggtgac ttgatcgagg tgtacaagat tatgaggagc atggacaggg       360
     tggataggga gcagttgttc cccttagttg aagggtcagt tacgacgggg tcacaagttt       420
     atggtgaggg gcgggaggtt taagggggat ttgaggaaga acttttttac ccagagggtg       480
     gtgaccgtct ggaatgccct gtttgggagg gtggtagagg cgggttgcct cacatccttt       540
     aaaaagtacc tggatgagca tttagcacgt cataacattc aaggctatgg gccatgagct       600
     ggcaaatgag attaggtaga tcggtcaggt gtctttaatg catcggtgca gactcgatgg       660
     gtcgaagggt ctcttctgca ctgtattatt ctgtgattct gtgatgctgt tgtttttcag       720
     actcgatgtg agtatgcagt ggtgttctcc agtgctcggt attaggacca ctgctcgttt       780
     tgttctttga aaacccgggc tgggtagggc agagtcccct cctcctccct ctttacacag       840
     cttcccctct ctgcag                                                       856
//
ID   Gypsy1-I_ST repbase; DNA   ; VRT   ; 4302 BP.
XX
AC   AC146867;
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   19-JUL-2005 (Rel. 9.01, Last updated, Version 2)
XX
DE   Internal portion of Gypsy1_ST retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   Gypsy retrotransposon; Gypsy1-I_ST; Gypsy1-LTR_ST; LTR; RNase H;
KW   Tf1 group; chromodomain; gag; protease; reverse transcripatase.
XX
OS   Xenopus tropicalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Silurana.
XX
RN   [1]
RP   1-4302
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy1_ST, a self-primed Gypsy LTR retrotransposon from the frog
RT   Silurana tropicalis.";
RL   Repbase Reports 4(1), 24-24 (2004).
XX
DR   Genbank; AC146867; Positions   67702   63401.
XX
CC   Gypsy1-I_ST is an internal portion of a young Gypsy1-I_ST LTR
CC   retrotransposon. The internal sequence is flanked by identical
CC   Gypsy1-LTR_SR long terminal repeats.
CC   Gypsy1_ST belongs to the Tf1 group of self-primed Gypsy LTR
CC   retrotransposons. Its reverse transcription is primed by a
CC   heteroduplex formed between a 11-bp portion of PBS
CC   (Gypsy1-I_ST, pos. 2-12) and the 11-bp 5' end of the Gypsy1_ST
CC   mRNA
CC   (Gypsy1-LTR_ST, pos. 182-192).
CC   Gypsy1_ST encodes a 1493-aa Gypsy1_STp polyprotein
CC   (Gypsy1-I_ST, pos. 14-4302, and Gypsy1-LTR_ST, pos. 1-190)
CC   composed of gag (pos. 100-200), protease (pos. 340-450), reverse
CC   transcriptase (pos. 560-730), RNase H (pos. 820-950), integrase
CC   (pos. 1062-1220) and chromodomain (pos. 1361-1413).
XX
FH   Key           Location/Qualifiers
FT   CDS           14..4300
FT                 /product="Gypsy1_STp"
FT                 /translation="MDPEEAVPDVGRALRGLASRMEAYESQQVRIGQVLDS
FT                 ILSRLPATPAVAEIPPAVVVPLPAMSSAREPRIPPPPRYSGNPQACRGFVT
FT                 QCQIQFEFQPSQFSCERAKVGYVMSRLEGKPLEWATSLWESQSPLTFDVKE
FT                 FLQMFRTIFDAPGRVATASSRLLQIRQGSLGASEYAIDFRTLMAETSWNEE
FT                 AYKAVFYQGLSSRLKDDLVSRDLPDSLEDLIALAIKVDTRLKEHQADKERS
FT                 KKSHPVLAPRFQNPMIPPPSPQFTTSSSEEPMQLGKARLSAQEKLRRRLSG
FT                 LCLYCGGQSHLAVSCPVKLGNTPASSKTVVSFAGSIVPKSVEQSHQFHVPV
FT                 QIRLSSQAIPVSAFLDSGAAGNFMDLAFAKKVGISLFPVTPSIRVFAIDDR
FT                 PLSTDTITLTTGELSVQIGALHLEKMSFLIIPCPSSPVVLGLPWLRLHNPS
FT                 IDWSSGQISRWSQYCQRHCLIPQPLQRVTVSSTSFSALPSVYRDFSDVFCK
FT                 KSAEFLPPHRRYDCPIDLLPGTMPPRGRTYPLSPAETAAMKEYISENLQRG
FT                 FIRPSTSPAGAGFFFVEKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFD
FT                 QLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNA
FT                 PAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLREN
FT                 FLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQ
FT                 RFIGFANYYRQFIKDFSSRIAPILSLIRKGGRPNCWPPVALEAFQSLKDAF
FT                 ISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFS
FT                 SAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKR
FT                 QNPRQARWSLFFSRFNFVLTYRPGTKNRKADALSRSFSPEDRLPIEQEPII
FT                 PPFRIIASVLPQFAEQILLSQSAAPSDTPIGMAFVPPELRLPILQQTHSSK
FT                 QAGHPGSEKTLELLRRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLL
FT                 HPLPIPSRPWTHLGMDFIVELPPSCGNTVIWVVIDRFSKMAHFIPLRKLPS
FT                 AVELAHLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSA
FT                 YHPQTNGAAERVNQALEQFLRNHVSLCQDDWSDLLPWAEFAHNNASHSSTG
FT                 RSPFLSVYGQHPLAFPQDLLLSEVPAADDLAAHMSVIWAATKSNLEKSSLV
FT                 HKTFADRRRKPSPPYKVGEKVWLSSRNIRLKVPSPKLGPKFLGPFSISEVI
FT                 NPVAVRLQLPPEMRIPNVFHVSLLKPVVLNHFSSAQSPPSAVLVDGQQEYE
FT                 VEKILDSRLSRGSLQYLVQWKGFGPEECSWEKDSDVHAPRLVKAFHDQFPQ
FT                 KPRPSGPVAPRGGGGTVMNRRRSLPAPVRRRPSSRRGESKMAAPRAPRGRR
FT                 DAGAMTSRAMAPNSNLKGRQRPRFNARV"
XX
SQ   Sequence 4302 BP; 927 A; 1227 C; 972 G; 1176 T; 0 other;
     ttatactcgg gccatggatc ccgaggaagc ggtaccggac gtcggaagag cccttcgcgg        60
     gctggcgtcc cgtatggagg catatgaatc ccagcaagtc agaattgggc aagtacttga       120
     ttccattttg tcccgtttgc ccgctactcc cgctgtcgcg gaaattcctc ctgctgtggt       180
     ggttcctctg ccagcaatgt cgtcagctcg tgagccacga atacctcctc ctccgcgcta       240
     cagtggcaat ccgcaggcct gcaggggatt cgtgactcaa tgccagattc agtttgagtt       300
     ccaaccttcc caattctcct gtgagcgagc aaaggtgggc tacgttatgt ctcgtctgga       360
     gggcaaacca ctggaatggg caacttctct ctgggagagc cagtcacccc tgacatttga       420
     tgtgaaggaa tttctacaga tgttcagaac catctttgat gcccctggtc gggtcgctac       480
     tgcctcttca cgcctgctgc aaatccgaca gggcagtctc ggtgccagtg agtatgccat       540
     agactttaga accctcatgg cggaaacttc ctggaatgaa gaggcgtata aggcagtctt       600
     ctaccaaggc ctatcgtccc gtctgaagga tgacctggta tccagagatc tacctgactc       660
     ccttgaagat ttgattgctc tcgctattaa ggtggacact cgccttaaag aacatcaggc       720
     tgataaagag cggagtaaaa agtctcatcc agtcctggct ccgcgcttcc agaaccctat       780
     gatacccccg ccttctccgc agtttaccac ttcctcttcg gaggaaccca tgcaacttgg       840
     gaaggctcga ctatccgcac aagagaagct tcggagacgc ctttccggcc tatgtctgta       900
     ctgcggcgga caatcccact tagcggtttc ctgccctgtc aagctgggga atactcctgc       960
     ttcaagtaag actgttgttt cttttgctgg tagtattgtt cctaagtcag tggaacaatc      1020
     tcaccaattt catgttcctg tgcagatccg gttgtcctcc caggcaattc cagtctcagc      1080
     cttccttgat tccggagcgg caggaaactt tatggacttg gcattcgcaa aaaaggttgg      1140
     catttccctc tttccagtga ctccttctat tcgggtcttc gccatcgatg acagacctct      1200
     ctccacggac accatcactt taaccaccgg tgaactatct gtccagattg gagcactaca      1260
     tctggaaaag atgtcattcc tgatcatccc atgtccttcg tctcctgttg tgctggggtt      1320
     gccatggcta cgactccata acccctccat tgactggtca tcgggtcaaa tctcccgttg      1380
     gagtcagtac tgccaaagac attgtttaat tcctcagcca ctccagcggg ttacagtctc      1440
     ctccacgagt ttttcagctc tcccctccgt ctacagggac ttctctgatg ttttttgtaa      1500
     aaagtcagca gagtttcttc ccccgcatcg gcggtatgac tgccctattg atctccttcc      1560
     tggaaccatg ccaccccgtg ggcggaccta tcctttatcc cctgcagaga cggctgccat      1620
     gaaggagtat atctctgaga atctccagcg tggatttatc cgtccttcta cctccccagc      1680
     aggagctggc ttcttttttg ttgaaaagaa ggacggtgga ctccgcccct gtattgacta      1740
     ccggggtctc aataaaataa ctgttaagaa cagatatcca ttacccctta tttctgaact      1800
     ttttgaccaa cttaaagggg ccaagatttt ctctaagttg gatctccgcg gggcctataa      1860
     tctcatcagg atccgagagg gcgatgagtg gaagacggct ttcaataccc gtgatgggca      1920
     ttacgagtac ctcgtgatgc ccttcggcct ctgcaacgct ccagccgtct tccaagagtt      1980
     cgttaacgat atttttcggg acctcctggg gaagtctgtt gtcgtgtacc tggatgacat      2040
     cctcatcttc tctcaagatt tggagaccca tcgctcccaa gtcaaagaag ccctttctcg      2100
     ccttagagaa aatttccttt tcgccaagtt ggagaaatgc actttcgaag taccaaagat      2160
     ctccttcctg ggctacatta tctcgtctag gggcttcgaa atggatcctg ccaaagtatc      2220
     tgctatccag aagtggccac ttccccagag taccaaagca atccagaggt ttataggatt      2280
     tgcgaactat tatcgccaat tcattaaaga cttttcttcc cgcattgctc ctatcctttc      2340
     cctcatccgc aaaggaggga gacccaattg ttggcctcct gtggcccttg aagccttcca      2400
     gtccctgaag gatgccttca tttcggcctc tgttcttcga caccctgagc ctcatttacc      2460
     cttctttatt gaagtcgacg cctctgatgt aggagcaggt gctatccttt cccagagaca      2520
     ttctgctgat ggtaagctcc atccatgtgc atacttctcc aagaagtttt cctccgccga      2580
     gcagaattac gacattggga atcgtgaact cctggctgtc aaactcgccc tcgaggaatg      2640
     gcgacacctc ttagagggag catctcatcc agtcacgatc tatactgatc ataagaacct      2700
     agaatttctt cagtctctca aaagacagaa tccccgtcag gcgaggtggt cgctgttctt      2760
     ctcccgtttc aattttgtcc tgacgtatcg tcctgggact aaaaatcgga aggcagacgc      2820
     tctgtctcga agtttctccc ccgaagatcg tctacctata gagcaagagc ctatcattcc      2880
     tcctttcagg atcattgcct ctgtattgcc ccaatttgct gaacaaattt tgctaagcca      2940
     gtctgccgct ccttccgata ctcctatagg aatggcattt gtacctcccg agttacgcct      3000
     tcctattctc cagcagactc atagctccaa acaagctggc catccgggtt ctgaaaaaac      3060
     tcttgagctt cttcgacgcc tagtttggtg gccgaccatc cgcaaggatg tccgagactt      3120
     tgtcgcagct tgtacagtat gtgccaccac taaagccagc cactctcgac cctgcggtct      3180
     tctgcatcca ttgccaatac cctctcgccc atggacgcat ttgggtatgg acttcattgt      3240
     ggagctgccg ccctcctgtg gtaacactgt catttgggta gtgatagacc gcttcagcaa      3300
     gatggcacac ttcataccct tgaggaaact cccctcggct gtggaactgg ctcatctctt      3360
     catacagcat atctttcgtt tacatggttt ccctgtggaa attgtctccg atagagggtc      3420
     ccagtttgtt tccagatttt ggcgctcctt gtgcaagtct ctgggagtat ctcttcagtt      3480
     ctcctcggcc tatcatcctc agaccaatgg ggcagcagag cgtgtaaacc aagctcttga      3540
     acagtttctg cgaaaccatg tttccctttg ccaagacgac tggtcggatt tactcccgtg      3600
     ggcagagttc gctcacaaca atgccagtca ctcctccact ggaagatctc ctttcttgtc      3660
     ggtgtatggt caacatcctt tggccttccc tcaagatttg cttctctccg aagttcccgc      3720
     tgcagatgac ctggcggctc acatgtctgt tatctgggct gccaccaagt ctaatttgga      3780
     aaagagttcc ttggtacaca agaccttcgc tgatcgtcgg agaaagcctt cccctccata      3840
     caaggttggt gaaaaagtct ggctttcttc caggaatatc cgcttgaagg taccatctcc      3900
     gaaactgggt cccaagttcc tgggtccctt ctccatctct gaggtgatca atcccgtagc      3960
     agtccggcta caacttcccc cagagatgcg gattcctaac gtgttccacg tctccctgtt      4020
     gaaaccagtg gtgctcaatc acttctcctc tgctcagtcc cctccttctg ccgtcctcgt      4080
     ggatggtcag caagagtacg aagttgagaa gattctagat tctaggctct ccagggggtc      4140
     actccaatac ctcgtccaat ggaagggatt cggccctgag gaatgctcct gggagaaaga      4200
     ctctgatgta catgctcctc gtcttgtgaa ggcattccat gatcaatttc ctcagaagcc      4260
     tcggcctagt ggtccagtgg ccccccgtgg gggggggggt ac                         4302
//
ID   GGLTR7_I    repbase; DNA   ; VRT   ; 6402 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Internal portion of ERV1 Endogenous Retrovirus from chicken.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-6402
RA   Smit A.F.;
RT   "GGLTR7_I - ERV1 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000030, GG000178, GG000004, GG000087, GG000931, GG000523.   No
CC   complete ORFs reconstructed (strong matches to pl-pro between bp
CC   2053-5034,  to env between 5772-6122). Either a currently active
CC   subfamily exists with ORFs, or an element has been exapted a
CC   while ago, as pos 5036-6349 correspond to a protein  called
CC   FET-1 (Reed,K.J. and Sinclair,A.H. FET-1: a novel W-linked,
CC   female specific gene up-regulated in the embryonic chicken ovary
CC   Gene Expr. Patterns 2 (1-2), 83-86 (2002).  GGLTR7B internal
CC   sequences have different 3' region. 6-7% subst, but much of this
CC   due to subfamilies (LTRs 3-4% div).
XX
SQ   Sequence 6402 BP; 1970 A; 1177 C; 1722 G; 1507 T; 26 other;
     atttggcacc ccagatggga cccactctgt tcggctgcag gaccggctga gagaggggac        60
     acctttggcg cgccccaaga tttcttggaa ggactccctt cctcacccga tcactgcggg       120
     gacagacaag gaccatccat aggcggacca ggtatgtgta tggaaaaggg ggaacccgta       180
     aggcgtgagg agacgtccta cgcagggtat gaaggagcgt gcctgctccc cccccccgag       240
     gtacgtgagc tcacgggtta ggttgccggc tggggtagga agactccttg gggagttcct       300
     acaaagggga cctgtaagtc gtacgcgagg aaagagcaac agctctccct taggtgattg       360
     gtaacagcgg ggattttgtc aaatgatagc gtggattctc ctggagatag tagtgggagt       420
     tataggttgt attattgtta tcaccatctg ctgagtgttc ggtaccgtgt atctaatcat       480
     ttcaggtcaa gctgactttc ggaaaaatct taaagcttgc agctgatcga ctaatgtact       540
     agtgttatta agattccagc taaaggacat cgtcagcact gtgtattatg tataaaccat       600
     ggtttttgtt ctaaatgtca gagtgagtgt ggtgtgagtg agacgcgttc cattcaggga       660
     gtgagtgtca gtccatttat gtagtactgt gttccgattg tggggaagag tgtaaaggaa       720
     ggtggacagg cttctgtgag atctgtttcc aagtgtttat aactgaacaa tatcactata       780
     cggtgttaag ggctgtttgt ggaaactttg aggaaattag gaatcaataa gaattgtgta       840
     aacatcatgg gaggctccca ggggaaggaa attcccaaac aaaccccttt gggatgtgca       900
     ttggcacatt ggtgggatat tgcaggggaa cctggaggca ccctgagtaa gaaaacttta       960
     atcaagtatt gcaatcaatg gtggttaata tataagttag aagatgatga gaagcggcat      1020
     cggaatggga ccctaaacta caatgccttc ttacagttac tgttattctt aaggagagaa      1080
     ggtaaatgaa gtaacatgaa cagtttttag aattgagtgc tctaatcacg agactaagta      1140
     ctgagtgttt gtggaaactg aagaactgta ttgtttaatt tgtgggttct gaagggaatg      1200
     ggacaaacag ttttgatggt ataagtcagt gtaattgtta atggtataca gaagcttgat      1260
     tgagggtatg tggaaatgta actgagggta tgaagtggac aaaggaaaaa gggttaaaga      1320
     tgaagtgagt ttatctgcac tggcatgaga gcagcccccc cgcaccactc ccctgcgagc      1380
     agaactctcg gagtgagagt gccggagtca gagactgctg ttgcaaacag cattacttgc      1440
     gaatgggggg agatggagag gatggggtac tggcagtgag aatagccttc atgtgcagag      1500
     atctaggaaa cccaaagttc cagtgttagc actggaaatc tctggagagg aggaggtgaa      1560
     actgaaatgt aatgttagta ctagtacttt atgtaatgat gagagtttgg aaagtgaaaa      1620
     gtttgagaag gacgcaggct gaggaaggca aagatgagca aggtgtaaca gggatgtcag      1680
     aaccaaagag ggtgagcaat atgaagaaaa aaaataattg agaaacagag atagtaagga      1740
     aattggaaat agcaacagct gttactgttg cggtgctaga gtagagttgt aagacccaga      1800
     ggtcccctta gaaagaggta aagggagggg cctggaagaa cccacggagg gttccacccc      1860
     tgcnggactg naagcagtgt gcaaactgcg gggaaatgag acattgggtg gagaaatcca      1920
     accgtctctg attgcaaaag ctgaatgatg ggaacctggg aagttnnccc tagcaaatcc      1980
     actggttaaa ttgcagctag gagagcagga taaagaggtt tattttctgg tgggtacggg      2040
     tgcctcttac cacccataga tgattttgca gcagtagtag gagctactgc ccaacaagaa      2100
     agagcttacc ttttggnatc aactaaatat gggctgngaa aacaagtagg aatacataca      2160
     tttttgtaca tgccaggttc tccaaaactg ttactcgggc aagacttatt aagacaaatg      2220
     gatgcagaga ttaaattcaa taaaattgga gctaagggtc aaacaatatt aactgactga      2280
     aaattataag tctggcttta gcacaaactg ggaaaaacaa tgttgtaccc ccagaagtta      2340
     cagaaatctt caataaggta tgcttaggag tgtgggtatc tgggatacct ggtagagtca      2400
     aaatgcagcc caaagttaaa agcaagagct agcccagtca gggtaaagta gtgccctttg      2460
     aggatatgga actgtaggat agaaggataa aagaaataat agataacttt tgggattttg      2520
     gattactaat tgaatatgaa tccaaataca gtactccaat cttgccagtg aaaaattgga      2580
     tagcaagtgc tatagtttgg tacaagattt gagggcaagt aatagaactg ttaaatgcat      2640
     acactcagtg gtggcaaatc catacacttt attaaccaag ttagggaatg agtaggtgga      2700
     gtttaccttc tggatttgaa ggatgccttt tctgcctggt ttggccaaaa gaaacttgtt      2760
     atttgccttt aaataggaaa cccctaatat gggaagaaaa acactcagtt aacctggaca      2820
     gtgttagccc agggctgtga gaatggccca anggttttng agaactggtc aactcgggag      2880
     cctgagattt gggttcctcc atcccacggt ggaacttgac tgcagcatgt ggatgccaca      2940
     gaaacaaaga gggctgtgtg caatggactg cgaatgtgct gaatttcttg gtttcagtga      3000
     tgatcgactt tctcaacaga aggcaccaag aactcaacgg caagggacct atctgggata      3060
     ggaggctaca gctggacttg gaacctcaag gactgccagg aaagaagcca tctgccaaag      3120
     ccctgagcca caaagtgccg aggaactccg tacattctca ggaatgacag cagggtgcca      3180
     accgtggata cacggctacg gactggtggt aaagcccctt caggaagtga gagaagagtg      3240
     gttgagggcg gtggctgcac cagtgctcaa gattcaagaa cctgggacat ctacgctagg      3300
     ccaaagaata acagttggaa tatctcatac agtgtctata ctgttttgga ggtaaaaggg      3360
     gggcatgggc tctcaccccc aggggttcct gaaataccag gccatcctgg tacagcagga      3420
     tgatgcagaa ataactgcaa ctaatattgt caacccagca tctctcctta gcggaactcc      3480
     cggagaacca gtatttcatg actgctttga aacaactgng gctacggact gttgccagtc      3540
     ggacctgaaa gacgaatcct tagaagatgc agaagacacc tggcttactg atggaagcag      3600
     tttngtgaga caaggaaacc gtaaggcagg atatgcagna actgctactg acaaggtnac      3660
     cgaagcacaa ccattacctg gggggacttt ctctcggaag gctgaaataa ctgccttgac      3720
     aagagcctga aatatacgga cagatgctaa ttatgtattt gggatgctac acgctcatag      3780
     caccatctga aaagagcaag gattgctcac acacaaggaa aaacagcatg atgtaaatct      3840
     accaaagagc gtggctatta tacattgtaa aggacatcag aaagggaaca ctgtacagga      3900
     aactggagat aagatggtgg atcaggtggc agaacaggta gttgaagagg gctttaattc      3960
     cagaccgtaa acttaaaatt tctgaacctg agtcaaaacc tgtaaaatat tttaaagagg      4020
     atagcaatct aattaatgat ttagaaggga agagagcagg ctgacagatg gacacgttgt      4080
     tttgcccttt ggtattctat ggaaattggt tctaagggag gataagaaaa tgtattgggc      4140
     aaacggacat tacaaagtac gatcctagta ccaggaaagg ggtncaagtg ggcctattgg      4200
     gaaagggaac cttccagggc aacagtgaca aattgatttc ttgaaactcc caagaaaagg      4260
     ggggtatcgc tgtatgttgg tactaactga tacctttttg ggatggccag aggtatttcc      4320
     ctgtaggact nataaggctc gggaagtaac gaaaatgctg ttacatgctg ttaattccaa      4380
     ggttcggggt tcctgtagca atctcatcag atcgaggccc acatttttgc caaggtggtc      4440
     caaacaaata agcacattat tgggaattga ttggcaattg cacacacctt atagaccgca      4500
     gtcaagcgga caggtggaaa aaacgaatca cctgatcaaa ttacagatag taaaacttgg      4560
     ccaagaggct gggattccct ggccgcaggc actgcctttg gcacttctga gaattcggac      4620
     taaaccccga accaaggaag gattaagccc acatgagatt ctttatgggc gaccttatac      4680
     tgtacaaaag gaaatctcta tgcaggtggg ggataaggtg ttgagtgaat atatggtcag      4740
     cttggcgaag caattaaaga aaattgaaca agcagtattc ggtgccaggg cacgaggcct      4800
     agatggtcca gtgcatgatg tattgccagg cgactatgtt tatgttaaac ctctctctca      4860
     gattcacctc tggaaccaaa gtgggaagga ccctaccaan ttctcctgac cacccacacc      4920
     acngccaagg tagagggact tacaccgtgg atacgtcata cccgcctgaa gaaagcacca      4980
     ggaccacagc ggacagcaga agagagagga ccactgaaaa tcaggatccg aaagcatgta      5040
     taagantttg ataatagtca gtatgattgg agcagtagtc acagcttggc aagagaatag      5100
     ctacttnaga ataactgaga aaattggcca ggctctcaac aaatcttgtt ggatatgcac      5160
     tgccctccct agaggggagg gaaaagtgcc cgtttatggg atagtggcac taaattggac      5220
     cattccagat tgggtagagc acggaaagtg taagtttggg atagaagaca agccacaaaa      5280
     gggacctaag tttgatttac tagttattaa ctctactaga tctatctttg cagacagaaa      5340
     aactgacggt aaaggtgggg tgggggttgg ctgacggaac ttgacaggca tagggtgtag      5400
     ttgggaatac agaaactctg gggcagtatc agggatcagt gaagctggaa ggtggaacca      5460
     aggtgngggg tgtgatccta gaatcgataa ggagtcacac tggctctcag ataagaacgt      5520
     actcggaatt gtagggatgg gagcatcgtt cactcntcag gaaaagatgg ccaggccatg      5580
     tcagttacct catggatact ggtggttatg tggggacgct caggcacgga aagcattacc      5640
     tttaaattgg acagggactt gcactacagg atacttaata gcccagacca cggtgcatga      5700
     ggagatccct cggggactcc tgaggacccc tnggattcga actaagcgta catacaaccc      5760
     cctagctata tataacaagg gataccacng ctttctgaga gcccttatcc cggctctagg      5820
     agttgcccag ctagaaaaag ctatagtaaa tatctctgca actctggaaa tcgtagagaa      5880
     tgccacaaca gatgcattac gagcaatcca agaagaggta tcctctttat ccaaagtagt      5940
     actccagaat aggatggcac tagacctatt aacagccaag gaaggagggg tatgcacaat      6000
     aataaatcag agtcgctgtg cttacatcaa taaggattta agaatcgaga gagatttaag      6060
     gaaaatttgg gaacagacga aagtcctgca taggacaagt caggatgaca ccagctggga      6120
     aggagattta nggaacttgc ttactagctg gctaccgaat ctaggatggt taaagcagct      6180
     cttcctagtt tgcatcatct tggtactgtt ggtaggtttt acctgtgtga tgataaagtg      6240
     ctctgcctgc ctgtgccgaa atacnagaaa ggaatatgag atatggaaga aacacgagct      6300
     aaggcagaag gtggaaagtg ggagctattt tgggacatnt agaacagaat gggatnatct      6360
     agcaggtaga ggtcctgcta gacttataga aaagggggga at                         6402
//
ID   HIND3_MS    repbase; DNA   ; VRT   ; 288 BP.
XX
AC   U49193; U49194; U49195; U49196; U49198; U49199; U49200; U49201;
AC   U49202; U49203; U49204; U49205; U49206; U49207; U49208; U49209;
AC   U49210; U49211;
XX
DT   17-AUG-1999 (Rel. 4.07, Created)
DT   17-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   Morone saxatilis HindIII repeat - a consensus.
XX
KW   HIND3_MS.
XX
OS   Morone
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Percoidei; Moronidae.
XX
RN   [1]
RA   Leclerc M.G., Leclerc G., Ely B.;
RT   "HIND3_MS.";
RL   Direct Submission to Repbase Update (15-FEB-1996)Bert Ely,
RL   Biological Sciences, Univ. of South Carolina, 700 Sumter Street
RL   (Room 701), Columbia, WS 29208, USA.
XX
RN   [2]
RP   1-288
RA   Jurka J.;
RT   "HIND3_MS.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 288 BP; 72 A; 57 C; 61 G; 97 T; 1 other;
     aagctttttc atttaagctg ccattctctt ccagaagcac ttatctttaa gtttccacct        60
     caggaagatg cacagcggcc ctcggttgat agtagaggga tttggtgtgg ctctctcact       120
     tagtttggct gtaatagaca aaagtatgaa yagtgacttt taatgccttt ttgtatgtaa       180
     ttctggcctt actgtgtttc ccatgcaatt ctggcaacaa agtgggactg ttgtgctatt       240
     ccacctaaag tgtcaaaaat gagcttcttt ggctctgaaa agaagctt                    288
//
ID   WHOOPER     repbase; DNA   ; VRT   ; 135 BP.
XX
AC   X54174;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   G.americana Whooper repeat.
XX
KW   Repetitive sequence; WHOOPER.
XX
OS   Grus americana
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus.
XX
RN   [1]
RP   1-135
RA   Love J.;
RT   "WHOOPER.";
RL   Direct Submission to Genbank (26-JUL-1990)Love J., L.S.U. Medical
RL   Center, Dept. of Biochemistry & Molecular Biology, 1901 Perdido
RL   St., New Orleans, LA.
XX
RN   [2]
RP   1-135
RA   Love J., Deininger P.;
RT   "Characterization and Phylogenetic Significance of a Repetitive
RT   DNA Sequence from Wooping Crane (Grus americana).";
RL   Unpublished.
XX
DR   GenBank; X54174; Positions       1     135.
XX
SQ   Sequence 135 BP; 28 A; 20 C; 49 G; 38 T; 0 other;
     gggctgtgaa tgggaccatg gtagaggttt caggaaagca agagcattcg gggctgggat        60
     gttttccttg ggagctgggt ctggatgttt gcagttttga ggcttgaatc tcgactatgg       120
     ctagagagct gctaa                                                        135
//
ID   ATSAT2      repbase; DNA   ; VRT   ; 325 BP.
XX
AC   L05837;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Amphiuma tridactylum satellite 2 repetitive element, clone pAtri
DE   C.
XX
KW   SAT; Satellite; Simple Repeat; ATSAT2;
KW   Satellite repetitive element.
XX
OS   Amphiuma tridactylum
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Caudata; Salamandroidea; Amphiumidae;
OC   Amphiuma.
XX
RN   [1]
RP   1-325
RA   Green A.B., Pabon-Pena M.L., Graham A.T., Peach E.S., Coats R.S.,
RA   Epstein M.L.;
RT   "Conserved Sequence and Functional Domains in Satellite 2 From
RT   Three Families of Salamanders.";
RL   Mol. Biol. Evol 10(4), 732-750 (1993).
XX
DR   GenBank; L05837; Positions       1     325.
XX
SQ   Sequence 325 BP; 69 A; 77 C; 86 G; 93 T; 0 other;
     ctgcacctca ctgatgatgc ccaatgaggc tgaaacgtgt ttggggttgc ttgagtctca        60
     cactgaaggg atgtgacctt gcagttcggt cttgactgct gcttctgggt ggtgtcaaga       120
     ctgatttgta tatggtcttt cccctgaagt aatggcacag caagcaaaaa acaatggttg       180
     gagggctgcc cagaggtgtt cccagtggtt acgattaatt catagcttct ccatccatca       240
     ctctttgttc gctgacttcg tcaccctaat tgagccgggt atgcccagac atgggtcccg       300
     gacttgctgt gcctagagac ttaag                                             325
//
ID   SAALUI      repbase; DNA   ; VRT   ; 127 BP.
XX
AC   L00985;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Salvelinus alpinus Alu1 repeat family DNA sequence.
XX
KW   Satellite; Simple Repeat; Alu repeat; SAALU1; SAALUI.
XX
OS   Salvelinus alpinus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Salvelinus.
XX
RN   [1]
RP   1-127
RA   Hartley E.S., Davidson S.W.;
RT   "Characterization and chromosomal location of an AluI repetitive
RT   DNA family in arctic charr, Salvelinus alpinus (L.).";
RL   Unpublished (1992).
XX
DR   GenBank; L00985; Positions       1     200.
XX
SQ   Sequence 127 BP; 45 A; 22 C; 20 G; 40 T; 0 other;
     ctctaaatcg tgtttaatgc actctgttag tgaaattttt tgcagtactg cttaaactag        60
     aggataggaa ccaatttcag cgagtttcaa gcatgaaatt caaaaaaaac acttttcctt       120
     aaacaag                                                                 127
//
ID   SWIMMER1    repbase; DNA   ; VRT   ; 5554 BP.
XX
AC   AF055641;
XX
DT   05-FEB-1999 (Rel. 4.01, Created)
DT   05-FEB-1999 (Rel. 4.01, Last updated, Version 1)
XX
DE   SWIMMER1 is a LINE1 retrotransposon, a complete sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   LINE1 retrotransposon; ORF1; ORF2; SW1; SWIMMER1.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-5554
RA   Duvernell D.D., Turner J.B.;
RT   "Swimmer 1, a new low-copy-number LINE family in teleost genomes
RT   with sequence similarity to mammalian L1.";
RL   Mol. Biol. Evol 15(12), 1791-1793 (1998).
XX
RN   [2]
RP   1-5554
RA   Duvernell D.D.;
RT   "SWIMMER1.";
RL   Direct Submission to Genbank (27-MAR-1998)Biology, Virginia
RL   Polytechnic Institute and State University, Blacksburg, VA 24061,
RL   USA.
XX
DR   GenBank; AF055641; Positions      59    5612.
XX
CC   SWIMMER1's proteins encoded by ORF1 and ORF2 are similar to
CC   the proteins encoded by LINE1 elements in mammals.
CC   SWIMMER1 is a low-copy-number repeat in teleost genomes.
XX
SQ   Sequence 5554 BP; 2011 A; 1012 C; 1097 G; 1434 T; 0 other;
     gacttccggt ttgtacatca ccgggatggc tgtgtagtgg gagagctccc gactgaacca        60
     gagaaatcag tcaaaaaaag ccccgggaac ggcgaaatca actatgtaag ttgaatataa       120
     catcgagggc aaagagagaa caccaaagac cagtgttttg cagcgaattg gtggaagcaa       180
     actgactttg aaacgggcta acgttagctg ctaaagctag tcaccggagg cttaccacct       240
     aagttaacgt ttgctaacac aagcgaaatg gcagaataca atatactgct gcaagagctt       300
     agagcgtttc gccaagaaaa caacgaaaaa ttggaaagta ttaaagaaga catcgctaaa       360
     gtgaataacc gaatggaaga agctgagggg aggattgaaa aagcagagga gcgaatccaa       420
     acaatggaag acgttatggt ggagctaatg caggtacacg tgaagctaac agacaagcta       480
     acggacctgg aaagccgcga aaggagagaa aacatccgga tttatggtgt gccagaaaca       540
     tctgagcgag attccccctc aatgagtgct tttgtggaaa ctttacttcg tgaaggtttg       600
     aagctagagg gcgcggagaa tataaacatc gaacgagccc atcgctcact agggccgccc       660
     ccccctaacg gagcctcacc acgctctatt ctggtgaagt ttttaagctt caaaaccaaa       720
     gagcaaatac tccgcaaagc atggcaacaa aaaggcttta cctggaaagg taaacagata       780
     tctttggaca atgactaccc tccactcatt ctcaagaaaa gaagagaata tgcagctatc       840
     cggaggattc tgaaggacaa gcagatccag tttcaaaccc tatttcctgc aaggctgaag       900
     gtgaagtatg ctgatggagt caagatctac aacacatcga cagaagcaag tgaggacatg       960
     agcgaaagag gatttcctgt ggaggtcatc aaaccaccgg aatctgtttt ggagcgatac      1020
     aagcagctga acacctggaa cagggtgact agagggaccg accgcactgc accaggccca      1080
     ccgggtccga gttataaaga aaaactgaga gcattcagga gaaccggtgc tgacccagcg      1140
     gtggagtgag ttttataaat accctggaaa ggtttcccaa tggtaacttt ggtttccgtt      1200
     tctgataaat cagaatctac tagaacttgt ctgaggagat cttattttta ttttcttatt      1260
     tttacctttt acctttaatt caaataaaaa tattgagacg taatggtcat caggtgtata      1320
     agtaactgac attatacgtg gttctgtcgg tgggacaacc tcccacacct aaagccctgc      1380
     tcaaaagggc cccccctacc aaagtgagga ggacactgcc tttagaggct caacagggtc      1440
     tatttctaag acccctacct tggaagttta agttacctac atttgatttt agttatgttc      1500
     aactgttaag ttttctttct gttcagagtt cagtgttcaa aatgaggagc agggaatata      1560
     tgtgcaaaat actaaaatgt gaaacattat gtatgacaga aacgtaaaac tgcttacact      1620
     taatatcaat ggcttacata atccagttaa gaggtggaaa acattatcca aactaaaaca      1680
     agataaagca gaaatagtct ttttacaaga aacgcatctc ccagaggctg agcatctaaa      1740
     gttgaataaa atgggcttta aacacgtttt ctattcttcc catagctcag ggcggaggag      1800
     agggggggcc accctgatag ctggggcagt gaattatcaa cacgtatcag aatacaaaga      1860
     caaagaaggc aggtatataa tgataacagg aaaaatcaat agtattctaa taacattact      1920
     aaatgtgtac gttccccctg gtagcgactg gtctttttat agacatattt ttgaaataat      1980
     ttcaacaaaa agtcaaggaa ccttgatatg cggcggagac ttcaatattg tattaaataa      2040
     ctctctcgat tcctcaaatg gcaaaggtga ctatagaaag attgggaaaa agatgagaca      2100
     tctcatggag gaaatgggca tagttgatgt gtggagggaa aataatccaa caaaaagaga      2160
     atatactcac tactcacatc cgcataatgc gtactcccgt ctagattaca tatttatgtt      2220
     caaaaatgac ctactaagag tgaaaaacag tgatattgga atttgtgcaa tttctgacca      2280
     taatccagtt acagtgagtc tctacttggc tggacagaaa agaaccactg tttggagatt      2340
     aaacaataac atcttaaatt atccaaatat caaagataaa ttaagctatg aaattaaaga      2400
     atacttaata cataatgata atggtgaggt atcaccagga actctctggg atgctctaaa      2460
     agcagttctg agagggaaaa taattagcat ctcatcctac cagaaaaaag ctagtcaaca      2520
     gaaactgaag tgcttagaag aaaaactgtt aaaacttcaa caggagcatt tccaaagtgt      2580
     aaataccaaa aataagactg aaattataaa attaaagaaa gaaattgacg acatcaatac      2640
     actggcggta cagaaaaaac ttgttttaat gaaacaaaaa tattatgaag taggcagcaa      2700
     atctttgaaa cttctatctt ataaactgag aaaacaacaa gcagagagag caatttataa      2760
     aataaaaaat ccttcaagta aaaaaattga gacggaccag gagaaaattc aacagtgttt      2820
     tcatgaatac tataaaaatc tctactcaga aacaaaccta aataatagtg accaaataga      2880
     tgcattttta aaagatttag atttgccaac tctaacagtt gagcaaaatg aaaaattgct      2940
     tacagcaatt accgaagaag aaattcaatt tgcgatcaga aaactaaaaa gcggaaaaat      3000
     ggcaggagca gacgggttta gtccagaatg gtataaaacg atggaaactc atctaattcc      3060
     aaccttatta aaaacattta actgggtgat ggagaagaaa acgactccat tgtcttggaa      3120
     caaagcaata atctcaataa tccccaaaga gggaaaggac agactggatt gtgctaacta      3180
     ccggccagtt agtgttttaa acatcgacta caaactattc acttctataa tatcacggag      3240
     attggaaaca attctcccaa tgctgataca taaggaccag acaggattca ttaaacagag      3300
     acagacacag gacagcatca ggaaagtact acacataatt catcaagttg ttcaacaaaa      3360
     acaggagact ctagtgatca gcctggatgc cgagaaggca tttgactcgg tgaggtggac      3420
     ctttttatat aaagtactcg gcaaatttgg cttttgcaaa tcaatcattg agacaatttc      3480
     agggttatat aacaaaccaa cagccaggat taaaatcaat ggagacttca ctgagacgat      3540
     aaccttagaa agaggaactc ggcagggatg taacatgtct gcccttttat ttgcattata      3600
     cattgaacct cttgggcagt ggatcaggca aagagcagac attaaaggag taaaagtttc      3660
     aggaaaggaa caaaagcttt ccttattcgc agatgatcta ctattaacta tatctcaacc      3720
     tacaaaaact ctaccaataa ttatggactc ccttaaagat tttggcactc tgtcaggata      3780
     taaaattaat gtaaacaaga cacaggtttt aactttaaac tacagccctc ctcaaaatat      3840
     taaagatgag tacaaatggg aatggcaggc agactcaatt aaatatttag gcattgctct      3900
     gcacaaagat tttacaaaga tgtttgaagt gaactatgga ccacttaaca ctaaactaca      3960
     gtcagatcta caaaggtgga atgcaatacc atttctagac cttcactcac ggattgactc      4020
     aataagaatg aatatattac cacgaatgtt atatttattt caatgtttac catttcccat      4080
     accccaaaag cagtttgtag aatgggataa gatgttatca agatacatat ggagagggaa      4140
     aaaacccaga attaaatata aaaccttaca attaaaaaca gatcagggtg gcagaaatct      4200
     tccttgtcta caagactatt tctgtgctgc ccagctgagg cctcttatct gcatgtgttc      4260
     tccagtttac actgcagggt ggaaagatct agagctgaaa acttttgaaa aaataccatt      4320
     aaaagcttta ttagcagatc tcaagttaca gggggaactt cttttacagg atgacccctt      4380
     actgagtatg atgattaaaa cctggaatga cacagtcaag aaatgtaact tgatggaaga      4440
     ctcaaaaatt ctcagatggt gtacgtgcga ctcagagttc acccccaaca aatatgatgg      4500
     tagatttaag ttatggattg ccaaagggct aactgatttc aactcatttg ttcataaggg      4560
     agcatttcaa acatttgata ccctaaaaaa aaaacacggg ttaatttctg acgacttctt      4620
     cagatatcta caggtccggc actatttcaa tcaaaaaatt aaaatatcca cagatgaccc      4680
     aaagtttctt aaaactttta aaacgttaat aaaagcaata tgccctacga aaataatttc      4740
     aaagttatac aatagtatct tgtcgcacaa gggggagaac acctactatg taaaggaaag      4800
     atgggagcga gaaggacggc tcactatcac agaggaggat tgggaacaaa tatgtcggaa      4860
     acaatggatc acaacaggat caaacatttg gcgtgaattc tgttggaaaa gcataatgag      4920
     gttttttact acaccctctc aaaaaaaata cctaggaaat agtaaatgtt ggaggtgtgg      4980
     taacaatgga gccaatcact tccatatatt ttgggactgt gtgattatca agaagtattg      5040
     gtctgacata catgaacatc tgcaaaatgt gttttctatt gttttcccct tgtcttttga      5100
     aagtctgttt ttgagtaaaa ttgatggcct agacaacaaa aataagaaac tgctctacat      5160
     tctgctggca gccagtaaga aagcaataac cagaaaatgg cttaaacctg aacaaccaac      5220
     gacagaggac tggattgatg tggtacaaag aatttacata atggaaagaa tctcacactc      5280
     tttacaaata cggctggatg ttttttacgc tacttggtct atatggacag aatatgttaa      5340
     gcctgtaaga tcagatttca tctgaaatca tgtcatatca tttatgtttt gaaactccct      5400
     gcttcctcac atgttccttt tttatttatt attattttgt tttttttgtt tttcaattaa      5460
     aaaactgaga aagcatgaac attgtaacac gtcaaaacaa tgtacaattt atcctgtgct      5520
     ttttcaataa aaaataaatt tgaaaaaaaa agaa                                  5554
//
ID   TC1_TF      repbase; DNA   ; VRT   ; 1639 BP.
XX
AC   .
XX
DT   27-FEB-2002 (Rel. 7.01, Created)
DT   27-FEB-2002 (Rel. 7.01, Last updated, Version 1)
XX
DE   Tc1-like DNA transposon from teleost fish - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Quetzal; TC1L_SS;
KW   TC1_FR3; TC1_FR4; TC1_TF; TDR1; TZF28.
XX
OS   Salmo salar
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Salmo.
XX
RN   [1]
RA   Radice D.A., Bugaj B., Fitch H.D., Emmons W.S.;
RT   "Widespread occurrence of the Tc1 transposon family: Tc1-like
RT   transposons from teleost fish.";
RL   Mol. Gen. Genet 244(6), 606-612 (1994).
XX
RN   [2]
RP   1-1639
RA   Jurka J.;
RT   "Consensus sequence of TC1_TF element.";
RL   Direct Submission to Repbase Update (06-JAN-2002).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1639 BP; 542 A; 328 C; 355 G; 413 T; 1 other;
     cagttgaagt cggaagttta catacactta ggttggagtc attaaaactc gtttttcaac        60
     cactccacaa atttcttgtt aacaaactat agttttggca agtcggttag gacatctact       120
     ttgtgcatga cacaagtmat ttttccaaca attgtttaca gacagattat ttcacttata       180
     attcactgta tcacaattcc agtgggtcag aagtttacat acactaagtt gactgtgcct       240
     ttaaacagct tggaaaattc cagaaaatga tgtcatggct ttagaagctt ctgataggct       300
     aattgacatc atttgagtca attggaggtg tacctgtgga tgtatttcaa ggcctacctt       360
     caaactcagt gcctctttgc ttgacatcat gggaaaatca aaagaaatca gccaagacct       420
     cagaaaaaaa attgtagacc tccacaagtc tggttcatcc ttgggagcaa tttccaaacg       480
     cctgaaggta ccacgttcat ctgtacaaac aatagtacgc aagtataaac accatgggac       540
     cacgcagccg tcataccgct caggaaggag acgcgttctg tctcctagag atgaacgtac       600
     tttggtgcga aaagtgcaaa tcaatcccag aacaacagca aaggaccttg tgaagatgct       660
     ggaggaaaca ggtacaaaag tatctatatc cacagtaaaa cgagtcctat atcgacataa       720
     cctgaaaggc cgctcagcaa ggaagaagcc actgctccaa aaccgccata aaaaagccag       780
     actacggttt gcaactgcac atggggacaa agatcgtact ttttggagaa atgtcctctg       840
     gtctgatgaa acaaaaatag aactgtttgg ccataatgac catcgttatg tttggaggaa       900
     aaagggggag gcttgcaagc cgaagaacac catcccaacc gtgaagcacg ggggtggcag       960
     catcatgttg tgggggtgct ttgctgcagg agggactggt gcacttcaca aaatagatgg      1020
     catcatgagg aaggaaaatt atgtggatat attgaagcaa catctcaaga catcagtcag      1080
     gaagttaaag cttggtcgca aatgggtctt ccaaatggac aatgacccca agcatacttc      1140
     caaagttgtg gcaaaatggc ttaaggacaa caaagtcaag gtattggagt ggccatcaca      1200
     aagccctgac ctcaatccta tagaaaattt gtgggcagaa ctgaaaaagc gtgtgcgagc      1260
     aaggaggcct acaaacctga ctcagttaca ccagctctgt caggaggaat gggccaaaat      1320
     tcacccaact tattgtggga agcttgtgga aggctacccg aaacgtttga cccaagttaa      1380
     acaatttaaa ggcaatgcta ccaaatacta attgagtgta tgtaaacttc tgacccactg      1440
     ggaatgtgat gaaagaaata aaagctgaaa taaatcattc tctctactat tattctgaca      1500
     tttcacattc ttaaaataaa gtggtgatcc taactgacct aagacaggga atttttacta      1560
     ggattaaatg tcaggaattg tgaaaaactg agtttaaatg tatttggcta aggtgtatgt      1620
     aaacttccga cttcaactg                                                   1639
//
ID   Sat-CR1_GG  repbase; DNA   ; VRT   ; 770 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Gallus gallus satellite sequence - consensus.
XX
KW   SAT; Satellite; Simple Repeat; CR1 element; Sat-CR1_GG;
KW   satellite sequence.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RA   Li J., Leung C.F.;
RT   "A CR1 element is embedded in a novel tandem repeat in the
RT   chicken genome.";
RL   Unpublished.
XX
RN   [2]
RA   Silva R., Burch B.J.;
RT   "Evidence that chicken CR1 elements represent a novel family of
RT   retroposons.";
RL   Mol. Cell. Biol 9(8), 3563-3566 (1989).
XX
RN   [3]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of chicken satellite element similar to CR1.";
RL   Direct Submission to Repbase Update (JUN-2004).
XX
CC   [3] (Consensus)
XX
CC   This sequence is a satellite repeat from Gallus gallus. It
CC   contains an approximately 200 bp fragment that is 71% similar
CC   to the chicken CR1 element.
XX
SQ   Sequence 770 BP; 184 A; 248 C; 157 G; 181 T; 0 other;
     attctatgct tctctccaaa agcacgacgt acgacgtctt ctacgcaaat aaacacgttt        60
     gtctccgaga aacatggcat tttcagccac agaatactgt tctcctccca aaccacacga       120
     tagtttctcc cgcaacgtac cactttcctc cccaaaatac aaacacggct ttcccaggag       180
     accacttttc tccccgacgt tggacatctt ctccccaaaa tcggatcttt ctccccacaa       240
     aataccactt ctctacccca aatcccatgc tttctcccac aaaagaccac ttctctccac       300
     agaatatctg ctttctcccc cacacggaca aattcacccc cccaagtacc acattttccc       360
     cagcaaaata ccacctttct cctgggcgta aggtatttcc accccaaaat accacggttc       420
     tcccccagag aaaacttctt ctcccactta ataccacttc caggacctga agggagcatc       480
     taatcaggac ggagaacggt tgcttacggg gctggaactg aggcaggggg cgttcaggtg       540
     agagagtacg aagacgtttt tcacaccgag gggggtgaca cactggaacc ggctgcccaa       600
     ggaggttggg gatgcctcat ccctggaggc attggagccc aggctgggtg tggctctgcg       660
     cagcccggtc tactggttgg cgaccctgtg caacttagcc cggcggcgtt gaaactccgt       720
     ggtccttgag gtccttttca acccaggcca ttctgtcttt ctgtgatcgg                  770
//
ID   TKSAT1      repbase; DNA   ; VRT   ; 32 BP.
XX
AC   X60272;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   T.karelini HAEIII satellite (type 1) DNA.
XX
KW   SAT; Satellite; Simple Repeat; Centromeric repeat; TKSAT1.
XX
OS   Triturus karelini
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Caudata; Salamandroidea; Salamandridae;
OC   Triturus.
XX
RN   [1]
RP   1-32
RA   Varley M.J.;
RT   "TKSAT1.";
RL   Direct Submission to Genbank (11-JUN-1991)J.M. Varley, University
RL   of Leicester, ICI/University Joint Laboratory, Leicester LE1 7RH,
RL   UK.
XX
RN   [2]
RP   1-32
RA   Varley M.J., Macgregor C.H., Barnett L.;
RT   "Characterisation of a short, highly repeated and centromerically
RT   localised DNA sequence in crested and marbled newts of the genus
RT   Triturus.";
RL   Chromosoma 100, 15-31 (1990).
XX
DR   GenBank; X60272; Positions       1      32.
XX
SQ   Sequence 32 BP; 12 A; 4 C; 10 G; 6 T; 0 other;
     ccagagtaag agttaagaca gtagctatga gg                                      32
//
ID   MRE1_OL     repbase; DNA   ; VRT   ; 226 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Oryzias latipes DNA, repetitive sequence.
XX
KW   MRE1_OL; medaka repeat element (MRE); Repetitive sequence.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RA   Uchiyama T., Hirono I., Ohta M., Takashima F., Aoki T.;
RT   "A highly repetitive sequence isolated from genomic DNA of the
RT   medaka (Oryzias latipes).";
RL   Mol. Marine Biol. Biotechnol 5(3), 220-224 (1996).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of medaka repeat.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [2] (Consensus)
XX
CC   MRE1_OL is an interspersed repeat element from Japanese medaka
CC   fish. There are estimated (from experiment) to be around 9800
CC   copies in the genome.
XX
SQ   Sequence 226 BP; 56 A; 65 C; 68 G; 36 T; 1 other;
     tttcggcttt tcccatcagg ggtcgccaca gcgaacgagt cgcatggtaa ayttggcaat        60
     gttttacgcc ggatgccctt cctgacgcaa ccttctcaaa gcaaccgggc ttgggaccgg       120
     cacagaggta gagaagggaa cagggagcag cccggagtcg aaccctggtt tcacggacgg       180
     acggaaggcg ccgcaaacca gcacgagcta aaccgggctc ccaaag                      226
//
ID   XLGST2      repbase; DNA   ; VRT   ; 262 BP.
XX
AC   M36867;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   X.laevis repeat element from gastrula mRNA.
XX
KW   Repeat region; XLGST2.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-262
RA   Meyerhor W., Korge E., Knoechel W.;
RT   "Characterization of repetitive DNA transcripts isolated from a
RT   Xenopus laevis gastrula-stage cDNA clone bank.";
RL   Roux's Arch. Dev. Biol 196, 22-29 (1987).
XX
DR   GenBank; M36867; Positions       1     262.
XX
SQ   Sequence 262 BP; 72 A; 62 C; 45 G; 83 T; 0 other;
     ctcagtgact tctaatatcc ttatcattta cagtaggggg tacattatcc cttataatac        60
     atgagtgata ctcagagttc ccgtataact cagcctgcag ccttgtgtct ttatatggtc       120
     acagaacaac ccccaagtga cttctaatat ccttatcatt tacagtaggg ggtacattat       180
     cccttataat acatgagtga tactcagcgt tccctgtata actcagcctg cagccttgtg       240
     tctttatatg gcgacagaac aa                                                262
//
ID   EASEL       repbase; DNA   ; VRT   ; 655 BP.
XX
AC   X85044;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   O.keta retrotransposon gene for reverse transcriptase.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; EASEL;
KW   Gypsy-like retrotransposon EASEL; reverse transcriptase.
XX
OS   Oncorhynchus keta
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus.
XX
RN   [1]
RP   1-655
RA   Tristem M., Kabat P., Herniou E., Karpas A., Hill F.;
RT   "Easel, a gypsy LTR-retrotransposon in the Salmonidae.";
RL   Mol. Gen. Genet 249(2), 229-236 (1995).
XX
RN   [2]
RP   1-655
RA   Tristem M.;
RT   "EASEL.";
RL   Direct Submission to Genbank (02-MAR-1995)M. Tristem, Imperial
RL   College, Dept of Biology, Silwood Park, Ascot, Berkshire SL5 7PY,
RL   UK.
XX
DR   GenBank; X85044; Positions       1     655.
XX
CC   reverse transcriptase CDS: <1...411.
XX
SQ   Sequence 655 BP; 186 A; 155 C; 155 G; 159 T; 0 other;
     aacacagcca aacgtgtctg ctgcccatgc ccccctaagg cgaaaaagga gcttgaccgc        60
     atggtggcga gtggcgtgat catggagcat acagcggtgt gctcctatgg tcctggtgcc       120
     caagaagaac aaaaatcagc tgaggttatg tgctgatctg agaatgttaa attactcagt       180
     aaaaagagtc acacattcta cctacatatc ctgccaaagc tggctggtgc caaggtgttt       240
     tctcttttaa atgcaggaag tggcttctgg cagattccac tagagagaga gcgtgtcagg       300
     cttaacatat tcataatgtc ttttggaagg tactatttca gacttccatt tggaatcact       360
     agtgccccag aaatcttcca gcatgagatg acagggctcc tgaaggacta agaaggcgtg       420
     gccatttaca tggatgagat ccttatttac tcacacacca taccatgatg tgagactcct       480
     atacacactg gaggatgtag gtttgaagct caacccagac aaacatctac tgcgacagaa       540
     acgtctcaac tacatatgac attgctttga cgagaatggc attcttcctg atgatgccaa       600
     gatccaggcc gtcacccagc cggagccggc aagcaacttg actgatctga gcagt            655
//
ID   UB7_XL      repbase; DNA   ; VRT   ; 626 BP.
XX
AC   X05025;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   Interspersed repeat; nonautonomous DNA transposon.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous;
KW   nonautonomous DNA transposon; T2-group; TIRs; UB7_XL.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-626
RA   Unsal K., Morgan T.G.;
RT   "A novel group of families of short interspersed repetitive
RT   elements (SINEs) in Xenopus: evidence of a specific target site
RT   for DNA-mediated transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248, 812-823 (1995).
XX
DR   GenBank; X05025; Positions    7236    6611.
XX
CC   Nonautonomous DNA transposon; 26 bp TIRs (TTAAAGGRR...); belongs
CC   to
CC   the T2-group [1]. TTAA target site.
XX
SQ   Sequence 626 BP; 212 A; 109 C; 123 G; 182 T; 0 other;
     ttaaagggca actaaagtct aaaatagaat aatgttagaa atgctgtatt atgtatacta        60
     aatataaaca tgaacttact gcactaccag cctaataaga caaatgattt atgctttcaa       120
     agttggcgca gggggctgtc atcttgtaac tttgttagac atttctgcaa tatcaagact       180
     cgcacatgct cagtgtggtc tgggcttcag ttgggaggtt aagcttaggg atcgtcataa       240
     attatcaaaa cagcacaagt caaataatat ctgccataga agccaataca gcaagactga       300
     ttaataatca taatatagag actacactgc gtctctggat acaaatctct acaggaaatc       360
     caacaatgct gctcgagttc tgggaagtaa ggtggaggga ctccccctgc catttgaaag       420
     tatgatcgtt tacctgcaca gcagttgggg accatctgac aattcctatc cacagcagta       480
     aaagaagggg gaattgcact gcatacagtc aggtttagat aaaaactgta gacatctttt       540
     aattaaagta tattggagat agatttattt ttcattaaag aaagtaaaaa tgggatttta       600
     tatttttgcc tttacatgcc ctttaa                                            626
//
ID   PTVM13      repbase; DNA   ; VRT   ; 419 BP.
XX
AC   X58028;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   26-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   T.vulgaris meridionalis DNA for highly repetitive DNA pTvm13.
XX
KW   Satellite; Simple Repeat; PTVM13; Repetitive sequence; TVPTVM13.
XX
OS   Triturus vulgaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Caudata; Salamandroidea; Salamandridae;
OC   Triturus.
XX
RN   [1]
RP   1-419
RA   Vignali R., Rijli M.F., Batistoni R., Fratta D., Cremisi F.,
RA   Barsacchi G.;
RT   "Two dispersed highly repeated DNA families of Triturus vulgaris
RT   meridionalis (Amphibia, Urodela) are widely conserved among
RT   Salamandridae.";
RL   Chromosoma 100, 87-96 (1991).
XX
DR   GenBank; X58028; Positions       1     419.
XX
SQ   Sequence 419 BP; 77 A; 80 C; 151 G; 111 T; 0 other;
     ggatccattt gaagatcctg cgtagcattc ggagggtgtt gaagcaggac gcggagacgg        60
     attgacttgt ctggtgatgg agagggtgaa gtcgaggatg acccccaggt tgcgtatgtg       120
     gtctgtgggt tccggggctg tgcctagcga tgtgggccac caggagtcat cctaggctga       180
     tggggtgggt ccgagaatga ggacctccgt cttgtctgag ttcagcttca atctgctgtc       240
     cttcatccag tcgctacggc cttcattcct ttgtggaggt tggctttggc agtgtggggg       300
     tcttctggaa ggaatatgat cagctgggtg tcgtccgcgt aggagatgat gttaaggtta       360
     tgttgagcaa cgtgggcgag cggtgccatg tagatattga acagcattgg gctgaggga        419
//
ID   SINE2AFC    repbase; DNA   ; VRT   ; 275 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   SINE element from African cichlids - a consensus.
XX
KW   SINE2; SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   AFC family; SINE element; SINE2AFC; Repetitive sequence.
XX
OS   Cichlidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;
OC   Labroidei.
XX
RN   [1]
RA   Terai Y., Takahashi K., Okada N.;
RT   "SINEs as probe for ancient explosion of speciation -A 'hidden'
RT   adaptive radiation of African cichlids?.";
RL   Unpublished.
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of cichlid AFC family SINE.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 98%.
XX
SQ   Sequence 275 BP; 82 A; 35 C; 34 G; 124 T; 0 other;
     tcatttgtta aaatgcttat ttctgttgtt gtattgggtt ttattttata tacagtgaaa        60
     atactatggc catgttacat atactaaaaa taatatagta actgtctgac ttatatactc       120
     aagctttagt gtcctgtaat ttatttacat tttatatgat actttacaat gatgataaag       180
     ggctatttta ttctatctat tctctatttc acactatata ttttgcatat gtaccaattc       240
     tatttttgac ctcataattt gtattaatgg ttgag                                  275
//
ID   REM1_XL     repbase; DNA   ; VRT   ; 497 BP.
XX
AC   X00678;
XX
DT   10-APR-1997 (Rel. 2.03, Created)
DT   10-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Xenopus laevis REM 1 sequence (repetitive Eco RI Monomers).
XX
KW   Inverted repeat; REM1_XL; Repetitive sequence.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-497
RA   Hummel S., Meyerhof W., Korge E., Knochel W.;
RT   "Characterization of highly and moderately repetitive 500 bp Eco
RT   RI fragments from Xenopus laevis DNA.";
RL   Nucleic Acids Res 12(12), 4921-4938 (1984).
XX
DR   GenBank; X00678; Positions       1     497.
XX
CC   125 bp terminal inverted repeats.
XX
SQ   Sequence 497 BP; 166 A; 113 C; 90 G; 128 T; 0 other;
     gaattctgca ctgaaatcca tttctcaaaa gagcaaacag atttttttat attcaatttt        60
     gaaatctgac atggggctag acatattgtc aatttcccag ctgccccaag tcatgtaact       120
     tgtgctctga taaacttcaa tcactcttta ctgctgtact gcaagttgga gtgatatcac       180
     ccccctccct ttttcccccc agcagccaaa caacagaaca atgggaaggt aaccagatag       240
     cagctcccta acactggtag atctaagaac aacactcaat agtaaaaacc aaggtcccac       300
     tgagacacat tcagttacat tgagaaggaa aaacagcagc ctgccagaaa gcacttctgt       360
     cctaaagtga aggcacaggt catatgacca ggggcagctg ggaaattgac aaaatgtcta       420
     gccccatgtc agatttaaaa attgaatata aaaaaatctg tttgctcttt tgagaaatgg       480
     atttcagtgc agaattc                                                      497
//
ID   BOVB_VA     repbase; DNA   ; VRT   ; 4606 BP.
XX
AC   AF332697;
XX
DT   29-OCT-2001 (Rel. 6.09, Created)
DT   29-OCT-2001 (Rel. 6.09, Last updated, Version 1)
XX
DE   BovB-like LINE from Vipera ammodytes - a complete sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Interspersed Repeat; BovB_VA.
XX
OS   Vipera ammodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Viperidae; Viperinae; Vipera.
XX
RN   [1]
RP   1-4606
RA   Zupunski V., Gubensek F., Kordis D.;
RT   "Evolutionary dynamics and evolutionary history in the RTE clade
RT   of non-LTR retrotransposons.";
RL   Mol. Biol. Evol 18(10), 1849-1863 (2001).
XX
DR   GenBank; AF332697; Positions       1    4606.
XX
SQ   Sequence 4606 BP; 1556 A; 916 C; 1048 G; 1083 T; 3 other;
     gtttaccgta gcagaaaatc aaaggtccag tccagttggc gagtctggct taaaccagca        60
     actgtanagg tccttgnagt cctagtggac gatcacttaa ctatgaccca gcagtgtgca       120
     tcagcaacca aaaaagctaa tacaatcctg gattgtataa acagaggcaa aaaatcaaga       180
     tcatgtgaag tattagtacc gctttataaa gccctcacct cgaattctgc agccagtttt       240
     ggtcaccata tcacaaaaaa gatgttgaga gttttgaaaa aattcataga agggcaacta       300
     agatgatcaa aggcctggag accaaaagat acaaagaatg gctgcggaac ttggatttgg       360
     ctagtctaaa gaaaagaaga aataggggag acatgatagc agtattccag tatctgaggg       420
     gctgccacaa ggctaggggg gagggtgtca ggttgttcac cagagcacca gagggaagga       480
     ggagaaacag tggttggaaa ctgatcaagg agagaatcaa cctggaatta aggagaaact       540
     tactgaccgt gaggacaaac aaccagtgga acaacttatc cccagaaatt gtgggcgctc       600
     catcattcta ttctattcta tcctatccta tcctatccta tcctatccta tccctatccc       660
     tatctctatc ctatcctatt ctattctatt ctacccactt ccatggatta ctgccttgtc       720
     gtggcgaagg ggcttgcata attcaatgaa gctatgagct atgccgtgca gggccaccca       780
     agacggaaag gtcatagcag agagttctga caaaacgtga tccactggag aaggaaatgg       840
     caacccactc cagtatcttt gccatgaaaa ccctatggac agtaccaaaa ggcaatacga       900
     tatgacgctg gaagatgagc ccctcaggtc ggaaggcatc caatatgcta ctggggaaga       960
     gcagagggct actactagta gccccagaaa gaatgaagcg actgggccaa agccaaaagg      1020
     acactcagct gtggatgtgt ctggtggtga aaggaaagtc cgatgctgta aagatttttt      1080
     ctccatagga acctggaatg taagatccat gaatcaagga aagctggacg tggtcaaaca      1140
     agagatgaca agattgaaca tcgacatctt aggagtcagc gaactaaaat ggacaggaat      1200
     gggtgaattt aattcagatg accatcaggt atactactgc gggcaggaat ccctcagaag      1260
     aaatggagta gccttcacag tcaataaaag agtagaaaaa gcaatactgg gatacaatcc      1320
     ccaaaatgac agaatgatct cagttcgaat ccaaggcaaa ccattcaata tcacagtagt      1380
     ccaagtctat gccccaacca ccagtgctga agaggatgaa attgaccggt tctgtgaagc      1440
     cctacagcac cttatagaac taacaccaaa aaatgatgtc cttatcatca tgggggattg      1500
     gaatgctaaa gtaggaagcc aaaagataac cagaataaca ggcaagtttg gccttggagt      1560
     acaaaatgaa gcagggcaca ggctgataga attttgtcaa gagaatacga tggtcatagc      1620
     aaacactctt ttccaacaac ccaagagacg gctgtacaca tggacatcac cagatggtca      1680
     atacagaaat cagattgact atgtgctctg cagccaaaga tggagaagct ctatacagtc      1740
     agtaaaaaca agaccaggag ctgactgtgg ctcagaccat gagcttctcg ttgcaaagtt      1800
     taggcttaaa ctgaagaaag tagggaaaag cactaggcca ctcaggtatg aattaaatca      1860
     tatccctgtt gaatatacag tagaggtgac aaatagattt aaggaattag atctgataga      1920
     cagagtgcct gaagaactat ggacagaggt tcgcaacatt gtataagagg tagcaactaa      1980
     aaccatccca aagaaaaaga aatgcaagaa agcaaaatgg ctgtctgagg aagctttgca      2040
     aatagctgac gaaaggaggg aagcgaaagg caagggagaa aaagaaattt acgcccaatt      2100
     gaatgcagaa ttccagacaa tagctagaag agataagaat gccttcttaa atgaacagtg      2160
     caaagaaata gaagaaaaca atagaatagg gaggaccaga gatcctttca agaaaattgg      2220
     agagatgaag ggaacgtttc atgcaaaaat gggcatgata aaggaccaaa atggcaggga      2280
     cctaacagag gcagaagaga ttaagaagag gtggcaaaat tacacagaag aactatacaa      2340
     gaatgagctt aacgtccctg ataatctcaa tgaggtggtc actgacctcg agccagacat      2400
     cctagaatgt gaagttaagt gggccttaga aaagctgagc aacaacaaag ctagtggagg      2460
     tggcaatatt ccagctgaac tattcaaaat cttaaaagac aatgcagtaa aagtgctaca      2520
     ctcaatttgc cagcaaattt ggaaaactca acagtggcca caggattgga aaagatcagt      2580
     ttacattcca attccaaaga gaggcagtgc aaaagaatgt tcaaactatc gcaccattgc      2640
     actcatttct catgctagta aagttatgct taaaattcta caagctagac tccagcaata      2700
     tgtggatcga gaactaccag aagtacaggc aggatttcga agaggcagag gaactagaga      2760
     tcaaattgcc aacatacgct ggctcatgga gaaagctaga gagttccaga aaaacatcta      2820
     cttctgcttc attgactatg ctaaagcctt tgattgtgtg gatcataaca aactgtggca      2880
     agttcttaaa gagatgggcg taccagacca tcttatttgt ctcttgagaa acctatatgc      2940
     gggccaagaa gcaacagtga gaactggaca cggaaccact gattggttca aaattgggaa      3000
     aggagtccgg caaggctgta tactgttgcc ctgcctattt aacttatatg cagagcacat      3060
     catgagaaag gcagggctag atgaatcaaa agttggaatt aagattgctg gaagaaatat      3120
     caacaaccta agatatgcag atgataccac tctaatggca gaaagtgaag aagaactaaa      3180
     gagcctcttg ttgcgggtga agaaggagag tgcaaaactt gggttgaaac ttaacattaa      3240
     aaaaaccaag atcatggcat ccaaccctct caattcctgg caaatagatg gggaagaaat      3300
     ggaggtagtg acagatttta tttttctggg ctccaagatc actgcagatg gggactgtag      3360
     tcaagaaatt aaaagacgca cgctcctcag gaggaaagcc atggcaaatc tagacagcac      3420
     actaaaaagc agagacatca ccctgtcaac aaaagtgcgt atagtcaagg ctatggtctt      3480
     cccagttgca atgtatggca gtgaaagctg gaccataaaa aaggctgagc gccaaagaat      3540
     tgaggccttt gaactatggt gctggagaag actcctgcga gtcccttgga ctgcaaggcg      3600
     atcaaaccgg tcagtcctag aggagatcaa ccctgactgc tctttagaag gccagatcct      3660
     gaagctaaaa ctcaaatact ttggccacct aatgagaagg aaggactcac tggagaagag      3720
     cctaatgctg ggaaagattg agggcaataa aagaatggga cgacagagaa tgagggtgct      3780
     ggatggagtc actgaagcag taggcgtgag cttaaatggc ctccagaaga tggtagagga      3840
     caggaaggcc tggaggaaca ttgtccatag ggtcgcgatg ggtcggacac gacttcgcag      3900
     ctaacaacaa caacaattct attctattct attctattct atattctggt tctgttctat      3960
     attctattct attctattct aatattggag cagagagaga gttttggccc tctccaaaca      4020
     gtttttgctg gatcagcatt cattaaccat aatgccaagt ctgagcagga gataagagat      4080
     tactagatat aacatttatc agaataatag aataacagag ttggaaggga ccttggaggt      4140
     cttctagttc aaccccctgc tcaagcagga gaccctatac catttcagac aattgaccgt      4200
     ccagtctctt cttaaaagac ttaaaagagc acccataact tctgaaggca agctgttcca      4260
     ctgattaatt gccctcactg ttaggaaatt tctccttagt tgcttctctc cttgattagt      4320
     tgccatccat tgtttgttgt cttgcttctg gtgctttgaa aaataggttg accgcctctt      4380
     ctttgtgaca gcccctcaaa tattggaata ctgctattat gtcattccta gttcttcttt      4440
     tcactagact agatactcca gcaactgttc ttcatatatt ttatccctcc agccctctta      4500
     aaccattttt attgctctct tctgcantct ttcctagatt acgtcttttt tataatatag      4560
     ttatcaaaat tggattcagt attctccctg gattttacta aagctt                     4606
//
ID   GGERVK1     repbase; DNA   ; VRT   ; 6885 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   ERV2 Endogenous Retrovirus from chicken.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-6885
RA   Smit A.F.;
RT   "GGERVK1 - ERV2 Endogenous Retrovirus from chicken.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   GG000290, GG000778, GG000829, GG000550, GG000264   (with GGLTR1
CC   LTRs) ORFs 248-2116, 2445-5039, 5124-6803 with best matches to
CC   EAVHP and HERVK. The region from 5260-6440 is only present in a
CC   subset of the elements (and subfamilies with different deletions
CC   exist)  erv.
XX
SQ   Sequence 6885 BP; 1596 A; 1733 C; 2007 G; 1540 T; 9 other;
     agtggtgacc ccgacgtgat gcttagggga atgagtcggc tgtctgcttg acggggcagg        60
     agcccaccgc ggagcgttag cacttgctgg gcggtggaag ccgggggacg agcccgggga       120
     cagagggaat ctgcagtcac ccctctgtcg gcggaggtcg cggacgagcg acggatatac       180
     cctccggaat cacgccggag aagagcctgg gatcctggtc tcaatcggga ggaggatcgg       240
     gggcgtcatg gaagccgtca taaaggtgat cgttcacgcg tgtaagattt ataacgggaa       300
     gcatgctcct tctcagaagg agatagctgc ggtcctctcg ttgcttgaga gggaggggct       360
     gttaacatcg ccccacgaga tttatgacca cagtaattgg gattcaatta ccgctgcctt       420
     atcccaacga gcaatggtca ctcaaaaagc agcggaattt aaaacttggg gtttgattct       480
     gggaggattg aaggctgcgc gcgaggagaa acttgcgggc gaacgagcca gggagctatt       540
     ggggttagag gttgcggggc cgggagtggg tctcattcct cgtgcaggtc cggctggaga       600
     taaggtggcg ccagccccta caacccatcc tgccgcgata gctccgggaa caaagaagga       660
     cgaagttgca tcgaattgct caagcgtgga ggccacaaca cccccacctc cgtatccctc       720
     tcaaggctta tatccttcac tgaagtcagt cggggagggg gggggaaggt ccttagagga       780
     atgtggtaac atctcctgca gggctgataa gcaggcttcg ggggagggta cggcattccg       840
     aggaggtaca gcncaacccg tgtgttgtga taacgagtgc agctcagtct gttgctgtag       900
     caacttcccc aacggggcgg actgcaccgt cccgccccgc ggtggatgca ggggcggagc       960
     cccgtggcca acgtcccagg ggtccacccc tgaggggtgc ggccccacag cacccgcccc      1020
     gtgggctccg cccacgctca ctgattgggc ccgggtgagg gaggacttac gagcagccga      1080
     cccagcacgg ccgccgctag cccttccggt catagtcaag acagagggcc cggcgtgggt      1140
     ccctctagat tctaaagcaa taacccgcct ttctgaaatt gttaaaacaa aggggctgcg      1200
     ttccccagta acaatggcgg cggtagaggc cctcatggcc tctagcctac taccgtacga      1260
     tgtgatcagc ctcatgcatg tgatccttga accggttcag tacaccctgt ggtatgatgc      1320
     ttggaataca caattgcaag cagtggtggc ggcagccacc cgagatgccc gacacccagc      1380
     caatggtcgg ggccgagggg ataggaccac attagcgcgt ctccagggtg tagcggacgg      1440
     catggtggga tctccggaag gccagcttag gctgttgaga ccgggagagt tagctgcagt      1500
     cacaactgcg gccctacagg cccttcggga gctggctcga gttacagagc ctactctccc      1560
     gtgggcggat atcaaacaag gcccttcaga gccttttgcn gaatttgcga accgcttgat      1620
     tcgtgcagtt gaggggtccg atcttccgga gccggcccaa ggtcctgtta tcattgattg      1680
     ccttaagcaa aaatcgctcc cggacataca gcaaattatt agggcggccc caggcaactt      1740
     aacaacccct ggggaactta tcaaatatgt gcttgaccat cagcgcgcta ctccgttaac      1800
     aaatgagggc ttagccgcag ccctccagct cgcagtacag gcagctacac gccccaagga      1860
     cgggggaggg aaaggtgtct gttntaagtg cggacaaccc ggacacttta ggaccaactg      1920
     tccgaataaa ggtggctcaa aaacagacac agacaaaaaa tgccagtggt gtggtggggc      1980
     gggccacacg gcgcgtaact gcaggaagat caaggaagcg atgcagggaa acggccaagg      2040
     gagggcgcct cgggcccagg gcaccttccc aaatcagagc aatgggccaa ggagaacatg      2100
     cccaccgtgg cattagccat gggattgggg gaccgtccac tagttaaggt gataatgtca      2160
     tatgcgggtc cgcggcccca aaaagaggga cctcgaacca cgctttttac ggctttgcta      2220
     gattctggtg cggacgttac agtgattgcg gaggccgatt ggccgccgaa ctggccactc      2280
     acctcgcatt ggcagcatat tgggggagtg ggaggcacag tcccaacaaa aggggctgca      2340
     gaggaagtgg agatcgctat cattgatagg agcgggacga tggaggcacc ggtgttgatg      2400
     caacccctcg tggcaccggt ggaaggatca atcttagggc gtgattttct cacgtccttg      2460
     ggagttcgac tcacaaattt atactaaggg ccactgtgta ccaccttgcg ctgcattttg      2520
     ccatcccatt acgctggaaa cgggaagcgt ctcccgtttg ggtggatcag tggccccttc      2580
     ctactgataa attagcagcg ctgacgcagc tggtctccag ggaactggag gcgggacaca      2640
     ttgaaccgtc acttagtagg tggaacacgc ccatctttgt tatccggaaa ccatcggggt      2700
     ccttccgttt attgcatgat cttcgggctg ttaatgcaca gctcgtccag ttcggtcccg      2760
     ttcagcaagg cggtccatca cttgcagccg ttcccagggg atggcccctt gtggtcattg      2820
     accttaagga ttgttttttc tccatccctt tggcagaaca ggaccgggag gcttttgcat      2880
     tcacagtccc tgtacggaat aaccagggcc cagctcaaag gtttcaatgg aaggttctcc      2940
     ctcagggaat ggcctgttca cctactattt gtcagcttgt ggtgaataca attatcgcgc      3000
     cagtgagacg cgacatgcca gactgccaga ttgtccatta catggatgat cttctgcttg      3060
     cagctccgac aggttcccaa ctacaagccc tagaagcacg ggtgtcaggc gcgctcacgg      3120
     gtgcaggttt cacgatctcc caagaaaagg tacaacgagg gccggggata gaattcctag      3180
     gatataagtt tggatcatcc acagttatcc ccgagggcct ggagattaag cctcacgtaa      3240
     ccaacntgtg ggatgttcag aaattggtag gagctatcca gtgggtccgg ggagcgctgg      3300
     gtattccacc acgattaatg aagccctttt atgaccagct gaagggctca gacccacggg      3360
     aaaggagaga gtggacccca gagatggacg ctgcctggcg agaaatacta tcactgtgct      3420
     caacagcaag tttgtccagg tggacaccgg gtatccccct agagggcgct gttactcgct      3480
     gccaggatgg ggccgtagct gtcattggtc atgcactggg ctcctgtcca caacctctgc      3540
     gctggctgtt ctcagcacag ccggtgcggg catttacccc gtgggtggag cttctctccc      3600
     tgctacttag taaggcaagg acanctgcat ttagggattt tggaaaggat ttggatatag      3660
     tccacctgcc caggttcttc cgagattcgc agatcttgcc tgacgaaatc ctcctggccc      3720
     tgcatgggtt cggaggcaag cttaggtatg cgggttccct tccgattttc gagctggcac      3780
     gcccgctccg ggtgtcactc cgtcttcggg ttgttgcttc tccccttgat ggtccgacag      3840
     tatttacgga tgcctcttca tcgacaggtc agggggcggt tgtctggaag aaccagacgg      3900
     gtgactggga aattagaaca tttcaagatc acggtgtcag tgttcagacg cttgaggcgc      3960
     aggcggtagc gatggcactg ctcctctggc cagacacccc ttgcaatgta gtcactgact      4020
     ctgctttcat tgcaaaaatg ttactacgaa tggggcagga aggacaaccc agtacttcga      4080
     ttgccttcct cttggaggaa gcattgacgg caaggacagc gcccgctgct gttcttcatg      4140
     tgcgaagtca ttcagacgtt ccgggattct ttacaactgg caatgccctc gctgaccaac      4200
     acgcggggca caaggttctt acggtgaggg aggctagaga cctgcattct acgctacacc      4260
     taggggctcg agcactgtca aggacatgtt cnattcctat ggcggtggcc cgggaggtgg      4320
     tgcaggcatg ccctcactgt aattcagccc ctgcgcttag tgcgggagtg aaccctaggg      4380
     gaattgcacc tctcgacgtc tggcagacgg acttcacgct ggagcctcgt ctggcgccga      4440
     ggtcttggct tgcggttact gttgataccg cgtccactgt cattgttgct acccaacatg      4500
     gccgcgcgaa ttcttctgca gcacaacatc actggtcggt gtgcgtcgcg acattaggcc      4560
     taccgagtca cattaagaca gacaatggct cctgcttcat ctcgcgctcc accaaggagt      4620
     ggctagcgcg ttggggcatc acgcatagta cnggtatccc tggcaactcg cagggccagg      4680
     ctattgttga aagagcgaat cggctcctca aggaaaagtt gcgtgtcctt ggggaggggg      4740
     aaaattacag gggaaagatt ccagtgagcc aacagggaga gttgctggct cgtgcgttgt      4800
     atgcattaaa ccattttgaa cggggggaga atcaccgcac ccctatgcaa aagcactggc      4860
     aaccgaggat tattgaagaa ggaccaccgg tgaagattaa gatcgacaat gggttatggg      4920
     aatcagggtg gtctatttta gtttggggca gaggctacgc ggcggtcaaa aacaaagagt      4980
     cgggaaacat tatatgggtt ccatcgagga aagttaagcc agagtttggc ctcaagtaac      5040
     gagaactgag cgtttctgtt gcaggcgtgg ctactgggga agccgaagac cccgacaccg      5100
     gagaagcgga aaaaaacact tatatgggtg cgtggaccac cgaagacaag ccaggacacg      5160
     gacccggcaa cacagccgtt actgcccaca ccgagaaatt tggttctacc tctgctaatg      5220
     tgtctgtgtc tatgttcttt gccagggggt ggcgcggcta tttgttgcag cagccgggga      5280
     atgtttgggt tacatgggcg aaccaaacag agcggttagc ttgctgcctt agcttacagt      5340
     cagctacctc gccctttcgg acatgcttga taggggttcc cttctgggtg gggaacagtg      5400
     atccacctga gttcctagga tacctgcggg cgtataacat ctccaaccgc tccgacccat      5460
     gccatattta ctgcgggagc cctcagctta atgacactga cctggcaaat gaaacgnttg      5520
     acantgtagg gaagaaagta gcttgtgtca tctgcaggtt gaatgtctcc ctcccttggg      5580
     aaccccagga gctacagttg ttggggtcgc agggagtgcc taatgacact tgggtgaata      5640
     caacttggtt atctcctggc tgtataggat ttgcaagggt cccaaaccag aactacagcc      5700
     ttcttgattc catctcccga aagggcccgt actggaatag ccgtattaat cgctctgatc      5760
     catttactga tgtgtttccg agggataggg cccactatta ctggggaaaa gagtattgcg      5820
     gttacacagc aaacaaaacc acattcatgc tatctaacaa cagctgcacg ggtatctgga      5880
     tttcggtaaa cacaactgtc accatagcac ggcccgacgg ctttcttagg aatttgacct      5940
     gcagcagtta taatgttggc gacagtaata ccagtggttg ttgtgttggg ccagctctca      6000
     gaggtcaggg cgaagaaagg aacatctgga ataatgacac agctaaagcg ctgccgtcag      6060
     gtattttcct tatttgcgga gatcgcgcct ggcagggaat tccagttaaa ccggtggggg      6120
     gtccatgtta cttgggacat ttaactgtcc tttccccaaa ggtttcagaa tggcttcaga      6180
     taatgaatcg tactcgaatg cgaactaaac gagacttgca gcagttatcg cctaattgta      6240
     gtgatgaagt tcgtctttgg ggaatgactg cgagagtttt tgcatcacta ttcccgcccg      6300
     taggtgcagc acaagcgctg aaggaaacag agcggttagc ttgctggtcg gtcaaacagg      6360
     ccaacgctac tacccttgtg ctgaatgaaa tgcttgagga tatgaatagt atccgacatg      6420
     cgttgctgca aaaccgggcg gctattgact tcttgctttt agctcaaagc cacggatgtg      6480
     aggatgtcga agggttctgt tgcttcaact taagtgatca cagcgcatcg atccataaac      6540
     aactacagtg gatgcaaggc cacacacaga agatcaaggt gcaggccgat cccttcggtg      6600
     aatggttgga gggtctgttt ggggaattag agccgtggct aaaacaaatg cttaaaacgc      6660
     ttatcgtagg tttagcaata ttcttggcta ttatgctctg tcttccatgc tttgttcagc      6720
     ttcttagggc atgcttaaga aacttcatag aggaaatctc acgtcagcag tacgcgtatc      6780
     agcgcattca ggagcaatta tagacgcact taggaataga aatagagtta ggatttgcgt      6840
     tcgcgttgta acgggtcagc tttctgtggc atggggaggg ggaga                      6885
//
ID   CR1-C2      repbase; DNA   ; VRT   ; 1221 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   CR1 Non-LTR Retrotransposon from chicken.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CR1-C2;
KW   CR1_GG.
XX
OS   Gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae.
XX
RN   [1]
RP   1-1221
RA   Smit A.F.;
RT   "CR1-C2 - CR1 Non-LTR Retrotransposon from chicken.";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1221 BP; 279 A; 257 C; 416 G; 265 T; 4 other;
     ggccttctat gatggagtga cggcatcggt ggacggggga agggcgacgg atgtcatcta        60
     cctggacttc tgcaaagcct ttgacatggt ccctcaccac atccttctct ctaaattgga       120
     gaggtatgga tttgaaggat ggactgttcg gtggattaag aattggttgg ctggtcgcag       180
     ccaaagggtt gtgatcaatg gttctgtgtc agggtggagg ccggtcacaa gcggtgtccc       240
     ccaggggtcg gtcttgggac cggtgctctt caacatcttc atcaatgaca tagacgatgg       300
     catcgagtgc accctcagca agtttgcaga tgacaccaag ctgagcggtg cagtcgatac       360
     actggaggga agggaagcca tccagaggga cctggacagg ctggagaagt gggcccatgn       420
     gaacctaatg aggttcaaca aggccaagtg cagggtgctg cacttgggcc ggggcaatcc       480
     caggtattta tacagactgg gggaaganct ccttgagagc agccctgcgg agaaggactt       540
     gggggtcctg gtggacgaga agctggacat gagccagcag tgtgcgcttg cagcccggaa       600
     ggccaactgt gttctgggct gcattaaaaa aggggtggcc agcagggaga gggaggtgat       660
     tgtccccctc tactcagctc ttgtgaggcc ccatctggag tactgcgtcc aggcctgggg       720
     cccccagtac aagaaggacg tggagctctt ggaacgggtc cagaggaggg ccactaagat       780
     gatcagaggg ctggagcacc tctcctatga ggaaaggttg agggaactgg gcttgtttag       840
     cttggagaag agaaggctcc ggggagacct cattgtggcc ttccagtact tgaagggagc       900
     gtataaacag gagggggaac ggctgtttac gagggtggat agtgatagga caagggggaa       960
     tggttttaaa ctgagacagg ggaggtttag gttagatatt aggaggaagt ttttcactca      1020
     gagggtggtg acgcactgga acaggttgcc caaggaggtt gtggatgccc catccctgga      1080
     ggcattcaag gccaggctgg atgtggctct gggcagcctg gtctagtggt tggcgaccct      1140
     gcncatagca ggggggttga aactagatga tcnttgaggt ccttttcaac ccaggccatt      1200
     ctatgattct atgattctat g                                                1221
//
ID   HER1_ST     repbase; DNA   ; VRT   ; 1384 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Scyliorhinus torazame DNA, HER1 LINE.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; HER1 LINE element;
KW   HER1_ST.
XX
OS   Scyliorhinus torazame
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
OC   Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea;
OC   Carcharhiniformes; Scyliorhinidae; Scyliorhinus.
XX
RN   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs.";
RL   Mol. Biol. Evol 16(9), 1238-1250 (1999).
XX
RN   [2]
RA   Gentles A., Kohany O., Jurka J.;
RT   "Consensus of S. torazame HER1 LINE.";
RL   Direct Submission to Repbase Update (MAY-2004).
XX
CC   [2] (Consensus)
XX
CC   Sequence contains endonuclease domain,
CC   and reverse transcriptase domain. HER1_ST
CC   shows similarity to the 5' end of PSLINE, and to CR1_GG.
XX
SQ   Sequence 1384 BP; 415 A; 189 C; 436 G; 339 T; 5 other;
     tgaggtagta tgggttgaag tcagaaatag gaaaggagca gtcaccttgt taggagtttt        60
     ctataggccc cccaatagta gcagagatgt ggaggaacag attgggaaac agattttgga       120
     aaggtgcaga agtcacaggg tagtagtcat gggtgacttt aacttcccaa atattgagtg       180
     gaaactcttt agatcaaata gtttggatgg ggtggtgttt gtgcagtgtg tccaggaacn       240
     ttttctaaca cagtatgtag attgtccgac cagaggaggg gcaatattgg atttagtact       300
     tggtaatgaa ccagggcaag tgatagattt gttagtgggg gagcattttg gagatagtga       360
     ccacaattct gtgactttca ctttagtaat ggagagggat aggtgcgtgc aacagggcaa       420
     ggtttacaat tgggggaagg gtaaatacga tgttgtcaga caagaattga agtgcataag       480
     ttgggaacat aggctgtcag ggaaggacac aagtgaaatg tggaacttgt tcaaggaaca       540
     ggtactacgt gtccttgata tgtatgtccc tgtcaggcag ggaagagatg gtcgagtgag       600
     ggaaccatgg ttgacaagag aggttgaatg tcttgttaag aggaaaaagg agacttatgt       660
     aaggctgagg aaacaaggtt cagacagggc gttggaggga tacaagatag ccaggaggga       720
     actgaagaaa gggattagga gagctaagag agggcatgaa caatctttgg cgggtaggat       780
     caaggaaaac cccaaggcct tttacacata tgtgagaaat atgagaatga ctagagcgag       840
     ggtaggtccg atcaaggaca gtagcgggag attgtgtatt gagtctgaag agataggaga       900
     ggtcttgaac gagtacgttt cttctgtatt tacaaatgag aggggccata ttgttggaga       960
     ggacagtgtg aaacagactg gtaagctcga ggaaawactt gttaggaagg aagatgtgtt      1020
     gggcattttg aaaaacttga ggatagacaa gtcccccggg cctgacggga tatatccaag      1080
     gattctatgg gaagcaagag atgaaattgc agagccgttg gcaatgatct tttcgtcctc      1140
     actgtcaaca ggggtggtac caggggattg gagagtggcg aatgtcgtgc ccctgttcaa      1200
     aaaagggamt agggataacc ctgggaatta caggccagtt agtcttactt cggtggtagg      1260
     caaagtmatg gaaagggtac tgaaggatag gatttctgag catctggaaa gacactgctt      1320
     gattagggat agtcagcacg gatttgtgag gggtaggtct tgccttamaa gtcttattga      1380
     attc                                                                   1384
//
ID   Gypsy2-I_ST repbase; DNA   ; VRT   ; 4321 BP.
XX
AC   AC146867;
XX
DT   05-FEB-2004 (Rel. 9.01, Created)
DT   19-JUL-2005 (Rel. 9.01, Last updated, Version 2)
XX
DE   Internal portion of Gypsy2_ST retrotransposon.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; 5-bp TSD;
KW   Gypsy retrotransposon; Gypsy2-I_ST; Gypsy2-LTR_ST; LTR; RNase H;
KW   Tf1 group; chromodomain; gag; protease; reverse transcripatase.
XX
OS   Xenopus tropicalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Silurana.
XX
RN   [1]
RP   1-4321
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy2_ST, a self-primed Gypsy LTR retrotransposon from the frog
RT   Silurana tropicalis.";
RL   Repbase Reports 4(1), 27-27 (2004).
XX
DR   Genbank; AC146867; Positions   90354   86034.
XX
CC   Gypsy2-I_ST is an internal portion of a young Gypsy2_ST LTR
CC   retrotransposon. The internal sequence is flanked by
CC   identicalGypsy2-LTR_SR long terminal repeats.
CC   Gypsy2_ST belongs to the Tf1 group of self-primed Gypsy LTR
CC   retrotransposons. Its reverse transcription is primed by a
CC   heteroduplex formed between a 10-bp portion of PBS (Gypsy2-I_ST,
CC   pos. 3-12) and the 10-bp 5' end of the Gypsy2_ST mRNA
CC   (Gypsy2-LTR_ST, pos. 193-202).
CC   Gypsy2_ST encodes a 1499-aa Gypsy2_STp polyprotein (Gypsy2-I_ST,
CC   pos. 23-4321, and Gypsy2-LTR_ST, pos. 1-198) composed of gag
CC   (pos. 100-200), protease (pos. 350-450), reverse transcriptase
CC   (pos. 560-730), RNase H (pos. 820-950), integrase (pos.
CC   1060-1220) and chromodomain (pos. 1360-1410).
CC   Gypsy2_ST and Gypsy1_ST are highly diverged from each other,
CC   there is only 46% identity between the Gypsy2_ST and Gypsy1_ST
CC   pol proteins.
CC   Surprisingly, in both retrotransposons, the ~63-aa C terminal
CC   portions of the pol proteins are encoded by the 3' proviral LTRs,
CC   and the stop codons are in the regions complementary to the PBSs.
XX
FH   Key           Location/Qualifiers
FT   CDS           23..4321
FT                 /product="Gypsy2_STp"
FT                 /translation="MDPAEESAASPFDQISQQLASLTQAVRDLQGSYQHLQ
FT                 TQVQGLSDPSNPVPPAAPAMSASPSAEYTGRPFEPKVPLPDKFSGDRRQFR
FT                 TFINSCRLLFSLQPYTFSSEQTKVGVMISLLSGEPQTWAHRLLERRSSILI
FT                 DANTFIHAMAQLYDDPHREVTAEAALRSLTQGKRPVEEYVSDFRRYAADTE
FT                 WNTQALKHQFRIGLSETLKDELAHVGVPQGLEELIDLSVQIDRRLRERRAE
FT                 RLQPSSMSWLSPRTSGNLQAAAHAGDTSEPMQIGLVRSALSSEERTRRRQL
FT                 NLCLYCGQPGHFLKDCPTRPKGKTRCPAMSPCVTFREPTSLSFPVVLQWPQ
FT                 DCLKSTVVIDSGACGCFMDLDFIKEHAVPTRPKMQPLSLRTADGSPITSGP
FT                 VTLETLPLEVFLDSKHIETISFDVVASPLFPILLGFPWLRLHNPSINWNTG
FT                 DIHFDSKTCSSHLLEKSHSMAVAPATDTQFAVVPNYLHEFKDVFDEKGADT
FT                 LPPHRVYDCPIDLLPGAAIPFGRIYPLSEPELIVLKKYIDENLEKGFICPS
FT                 TSPAGAGIFFVEKKDHSLRPCIDYRQLNLITVKNRYPLPLIPELFQNLREA
FT                 KIFSKLDLRGAYNLVRIRKGDEWKTAFRSRYGHFEYLVMPFGLCNAPATFQ
FT                 HLVNDIFRDFLDQFVIVYLDDILVFSSSIKEHEIHMRKVFSRLREHSLFAK
FT                 LEKCEFHKTSIEFLGFVISTDGILMDPKKVSAVLNWPVPTSRKATQRFIGF
FT                 SNFYRRFIRNFSKIISPITDLTSTTKRFQWSSQAQSAFDKLKELFTSAPIL
FT                 KHPDPSLPFVVEVDASETAVGAVLSQRSGLQNFLHPVAFFSKKLSPSEKNY
FT                 DVSDRELLAIKVAFEEWRQYLEGSSHPILIFSDHRNLEYLRTAKRLRPRQA
FT                 RWALFFSRFNFHITYRPGSQNHKADALSRMFHDENVETQSDTILRPQNFLL
FT                 LQTDLVAKMLEQSSSVVPSDQLRNKDGLLFFKDRIFVPEALRLDVLRLIHD
FT                 HPLAGHMGGRKTVDLAKRSFYWPGMIRDCNQYVLSCEVCARFKESRTKHLG
FT                 LLHPLPIPDRLWGSVSLDFIVELPHSHGFNTIFVVVDRLSKMAHFIPLTSI
FT                 PSAVTTAEVFIREVVRLHGVPDEIISDRGVQFTSRFWRTLCNALKIKLALS
FT                 TAFHPESNGQTERTNQTLEQYLRCFSSFLQDNWYELLPLAEFAYNNSVHSS
FT                 IKQTPFYANFGFHPQVLPNFPKEVSVPAVQDRLSFISNNVQLIQSAMKQAQ
FT                 RNFKFFADRKRRSDPEFKLGDSVWLSTRHIKLPCPTKKLGQKFVGPFPITK
FT                 QVNEVAFKLKLPSSYKIHPVFHAALLKPVVKNRFVRRSAKPPDPVPIEGVE
FT                 EFEVQSILDSRIRRGRLQYLIQWKGYSPEENSWESASDVHAPLLVRSFHKK
FT                 HPEKPASTCARRSHLGGGQCQAIRTARAKPPVQRMRDYSRAPVRICARALT
FT                 RSRRRAHASAHFRAKTGACASRLKRRRGLQSSAR"
XX
SQ   Sequence 4321 BP; 1099 A; 950 C; 890 G; 1382 T; 0 other;
     gtatcacctc gccaaggtaa agatggatcc ggctgaggaa tctgctgctt ccccttttga        60
     tcaaatatcc cagcaattgg catcactaac tcaggctgtg agagacttgc aaggtagtta       120
     tcagcactta caaacccagg ttcaagggct gagtgatcca tctaaccctg ttccacctgc       180
     tgcacctgct atgtctgcct ctccttctgc tgaatacaca ggacgtcctt tcgaacccaa       240
     ggttccgctt cctgataaat tttctggtga cagacgtcag tttcgcactt tcattaatag       300
     ctgcagacta ttattttctc ttcagcccta taccttttct tcagaacaaa ctaaggtggg       360
     agtgatgatt tccttgttat cgggggaacc acagacgtgg gctcatcggt tgttggagcg       420
     tcgcagttct attcttattg atgctaatac cttcattcat gctatggctc agctgtatga       480
     tgacccccat agagaagtca ctgctgaagc ggctctacgc tctttgacac agggtaaaag       540
     gcctgtagaa gaatatgtgt cggatttccg ccgctatgct gctgataccg aatggaatac       600
     gcaggcttta aaacatcagt ttcgcattgg gctgtcagag actctgaaag atgaattggc       660
     ccatgtggga gttcctcagg gtcttgagga acttattgac ctttctgtcc agattgaccg       720
     ccgcttgagg gaaagacgtg cagaaagact tcagccttct tcaatgtcct ggttatcccc       780
     aagaacctct gggaatcttc aagctgctgc ccatgcgggt gatacttctg aacccatgca       840
     aattggtcta gtgaggtctg ctttatcgtc tgaggaacgt acccgtagac gccagttaaa       900
     cttatgtcta tattgtggtc aacctggtca cttcctgaag gattgcccaa ctcgtcctaa       960
     gggtaagact agatgtcctg ccatgtctcc ctgtgtgact tttagagaac caacatctct      1020
     ttcattccct gttgttttac agtggcctca ggactgtctc aaaagcacag tggtcattga      1080
     ttcgggagcc tgtggttgct ttatggatct cgacttcatt aaagaacacg cggtgcccac      1140
     ccgacctaag atgcaaccac tatcgttgag gacagctgac ggttcgccca tcacttctgg      1200
     tcccgttacc ctagagactt tacctttgga agtatttttg gactctaaac atattgaaac      1260
     catttcgttt gatgttgtcg cttctccttt attccctatt cttctggggt ttccttggct      1320
     aagactgcac aacccatcaa taaattggaa cactggggac attcattttg attctaagac      1380
     ttgttcttct catttgttag agaaatctca ttcgatggca gtggctcctg caactgacac      1440
     tcaatttgct gttgttccta actatctcca tgaattcaaa gatgtttttg atgagaaagg      1500
     cgctgacact cttcctcctc atcgggtgta cgattgtccg atcgatttat tgccgggggc      1560
     cgccattcct tttggtcgca tttatccgtt gtctgaacct gaattgattg tgttgaaaaa      1620
     gtatatcgat gaaaatcttg aaaaaggctt catttgtcca tccacgtctc cagctggggc      1680
     cggtatcttc tttgttgaga aaaaggatca ttcgctacga ccttgtatcg attacaggca      1740
     attaaatttg atcactgtga aaaatcgtta tcctcttccc ttaattccag aattgttcca      1800
     gaacctacga gaggctaaga ttttttctaa attggactta cgtggtgcat ataatttggt      1860
     aagaattcgt aagggggacg aatggaagac agctttcagg tcacgttacg gtcattttga      1920
     atatctcgtg atgccatttg gattatgtaa cgcacccgcc actttccaac acctcgttaa      1980
     tgacattttt agagacttcc ttgatcaatt cgttatagtc tatttggatg acattttggt      2040
     tttttcttcc tcaattaaag aacacgagat tcatatgaga aaagttttta gcaggttacg      2100
     ggaacattca ttgtttgcta aacttgaaaa atgtgagttc cacaagacct ctattgaatt      2160
     tcttggtttt gtcatctcaa ctgatgggat tctcatggac cctaagaagg tgtcagcagt      2220
     tctgaattgg ccagttccga ctagtcgtaa ggcgacacag agatttatcg gtttttctaa      2280
     tttttacagg aggtttattc gcaatttctc aaagattatt tctcccatca cggacttaac      2340
     cagtaccact aaacgttttc agtggtcttc tcaagctcag tctgcttttg acaaattaaa      2400
     ggaacttttt acgtcggctc ctatcctcaa gcatcctgat ccttcattac cgtttgttgt      2460
     tgaagtggat gcctcagaga ctgctgtggg agctgtcctt tcgcagaggt ccggtttgca      2520
     gaattttctt catcctgtgg cttttttttc aaaaaaactc tccccctccg aaaagaacta      2580
     tgacgtttct gacagagaac ttttggccat caaagtagct ttcgaagaat ggcgtcaata      2640
     tctagaaggt tcctcccatc ctattctcat cttttcagat cacagaaatc tggaatattt      2700
     acgtacagcc aaacgtttaa gaccaagaca ggctcgctgg gctttatttt tttccagatt      2760
     caattttcat ataacataca gacctggttc tcaaaatcat aaagctgacg ccctttctcg      2820
     tatgttccat gatgaaaatg ttgaaactca atctgatacc atccttagac ctcaaaattt      2880
     tttgttatta caaactgatc tagtggctaa gatgttggaa cagtcctctt ctgtagttcc      2940
     ttctgatcaa cttcggaata aagatggtct tctatttttt aaggatagaa tttttgtacc      3000
     agaagctttg cgattggatg ttcttcgatt aattcatgat catccattag caggtcacat      3060
     ggggggacgc aagactgttg atttagctaa aagatctttt tattggccag gaatgatcag      3120
     agactgtaat caatatgttt tgtcttgtga agtttgtgcc cgttttaagg aatcacgcac      3180
     caaacattta ggtcttcttc atccattacc tataccggac agactttggg ggtcagtttc      3240
     cttggacttt attgttgaac tccctcattc tcatgggttc aatactattt ttgtggttgt      3300
     tgaccggtta tccaagatgg cacatttcat ccctctgacc agtattccgt ctgcagtaac      3360
     cactgctgaa gttttcatta gggaggtggt tcgtttacat ggggttccgg acgaaattat      3420
     atctgaccgt ggggtacaat tcacctccag gttttggaga accctttgta atgctttaaa      3480
     aataaaactt gctctctcta ctgctttcca tcctgaatcc aacggtcaaa cagagagaac      3540
     taaccaaact cttgagcagt atctgcgttg tttttcgtct tttttacaag acaattggta      3600
     tgaacttttg ccactagcgg agtttgcata taacaattct gtgcattctt ccattaaaca      3660
     aactcctttt tatgcaaatt ttgggtttca tccgcaagtt ctcccaaatt ttcctaagga      3720
     agtttcagtg ccagcggtcc aggatagact ttcttttatt tctaataatg tccaattaat      3780
     tcaatctgct atgaaacagg ctcaaaggaa ttttaaattt tttgcagatc gcaagcgaag      3840
     aagtgatcct gaatttaagt tgggagattc tgtgtggtta tccactcgtc atatcaaact      3900
     cccgtgccca actaagaaat taggtcagaa atttgttggc ccgtttccta tcacaaaaca      3960
     agtcaatgag gtagccttta aattgaaatt accgtcttct tacaagattc atcctgtgtt      4020
     tcatgctgcg ttactaaaac cagtggtcaa gaatcgcttt gtgaggagaa gtgccaagcc      4080
     tcccgatcct gttcctatcg aaggtgttga ggagtttgaa gttcagtcaa ttttggattc      4140
     aagaataaga agaggtcggt tgcaatatct gatccaatgg aaggggtatt ctccagagga      4200
     gaattcatgg gaatccgcat ctgatgttca tgctcccttg ctggtaagaa gttttcataa      4260
     gaaacatcct gaaaaaccag catctacttg cgcccggagg tcgcacctcg ggggggggca      4320
     a                                                                      4321
//
ID   RP5S        repbase; DNA   ; VRT   ; 209 BP.
XX
AC   .
XX
DT   20-JUL-1999 (Rel. 4.06, Created)
DT   20-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Carp repetitive DNA homologous to 5S rRNA - a consensus.
XX
KW   RP5S; Repetitive sequence.
XX
OS   Ctenopharyngodon idella
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Ctenopharyngodon.
XX
RN   [1]
RA   Huang J.C., Huang l.F., Wang C.Y., Hsiao W.P., Lo B.T.;
RT   "Molecular cloning and relationship of highly repetitive HindIII
RT   sequences in crucian carp, silver carp, bighead carp and grass
RT   carp.";
RL   Proc. Natl. Sci. Counc. Repub. China [B] 17, 85-90 (1993).
XX
RN   [2]
RA   Murakami M., Fujitani H.;
RT   "Characterization of repetitive DNA sequences carrying 5S rDNA of
RT   the triploid ginbuna (Japanese silver crucian carp, Carassius
RT   auratus langsdorfi).";
RL   Genes Genet. Syst 73(1), 9-20 (1998).
XX
RN   [3]
RP   1-209
RA   Jurka J.;
RT   "RP5S.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 209 BP; 40 A; 48 C; 52 G; 67 T; 2 other;
     aagcttttgg gttttctttc ctacttatat aatgtactgg cgattagatt ggctggtctt        60
     taaatagccc tctctttgca gcagtcttcg cttacggcca taccamcctg rctatgcccg       120
     atctcgtctg atctcggaag ctaagcaggt ttgggcctgg ttagtacttg gatgggagac       180
     cgcctgggaa taccaggtgc tgtaagctt                                         209
//
