ID   AFROSINE    repbase; DNA   ; MAM   ; 160 BP.
XX
AC   .
XX
DT   19-2003 (Rel. 8.11, Created)
DT   20-JUL-2005 (Rel. 8.11, Last updated, Version 2)
XX
DE   SINE elements from African endemic mammals - a consensus
DE   sequence.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; AFROSINE.
XX
OS   Proboscidea
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots;
OC   asterids; lamiids; Lamiales; Martyniaceae.
XX
RN   [1]
RA   Nikaido M., Nishihara H., Hukumoto Y., Okada N.;
RT   "Ancient SINEs from African Endemic Mammals.";
RL   Mol. Biol. Evol 20(4), 522-527 (2003).
XX
RN   [2]
RA   Nikaido M., Nishihara H., Hukumoto Y., Okada N.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (08-NOV-2002)Masato Nikaido, Tokyo
RL   Institute of Technology, Graduated school of Bioscience of
RL   Biotechnology; 4259 Nagatsuta-cho Midori-ku, Yokohama, Kanagawa
RL   2268501, Japan (E-mail:mnikaido@bio.titech.ac.jp,
RL   Tel:81459245742, Fax:81459245835).
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "AFROSINE consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 92%.
XX
SQ   Sequence 160 BP; 41 A; 38 C; 42 G; 38 T; 1 other;
     tgctaaccaa aaggtcggca gttcgaaacc accagctgct ccaygggaga aagatgtggc        60
     agtctgcttc cgtaaagatt tacagccttg gaaaccctat ggggcagttc tactctgtcc       120
     tatagggtca ctatgagtcg gaattgactc catggcagtg                             160
//
ID   SATI_OC     repbase; DNA   ; MAM   ; 376 BP.
XX
AC   AF498006; AF498007; AF498008; AF498009; AF498010; AF498011;
AC   AF498012;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Oryctolagus cuniculus monomeric satellite I - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SATI_OC.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RA   Ekes C., Hadlaczky G., Cserpan I.;
RT   "Identification of two rabbit centromeric satellite DNA
RT   families.";
RL   Unpublished.
XX
RN   [2]
RA   Ekes C., Hadlaczky G., Cserpan I.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-APR-2002)Institute of Genetics,
RL   Biological Research Center, Temesvari krt. 62., Szeged H-6701,
RL   Hungary.
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "SATI_OC consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 95%.
XX
SQ   Sequence 376 BP; 130 A; 70 C; 74 G; 98 T; 4 other;
     aagctttctt cctagaaaac tcgaatgtgt ggaggatttg actccaggtg gaaccaatta        60
     gcgtttgcca gcagaaaaca aaaacktaca tgctaaaatg cattcaaaac cgtaaagtcc       120
     atagagaatg tccagaaaac acaaacacac acagaggctg tagcaagatc tgggattgag       180
     atagccacaa cacaccagat agttttgttt tcatccagga gtatctggac aaattgttgt       240
     rgatttgarg tgaaatttaa ccaaaaatca ccgtgaaagt ggttttggag aaaagcacaa       300
     tcttcctgtt cggcaaatgc atccaatgtc atgtttacag aaasaaatat catgttttct       360
     caggtttctg aagctt                                                       376
//
ID   ERV15_MD_I  repbase; DNA   ; MAM   ; 8159 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV15_MD, endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV15_MD_I.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-8159
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-8159
RA   Gentles A., Jurka J.;
RT   "ERV15_MD, a family of class 1 endogenous retrovirus from the
RT   opossum M. domestica.";
RL   Repbase Reports 5(11), 353-353 (2005).
XX
CC   [2] (Consensus)
XX
CC   At least 30 large fragments, including some nearly full-length
CC   ones, exist in the genome still, with similarities to the
CC   consensus of approx. 88%. Two significant ORFs are present in the
CC   consensus. The corresponding LTR is ERV15_MD_LTR. This consensus
CC   was reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV15_MD_I_1p"
FT                 /translation="RMPSSPSHWPLLVSPSLPLSGSPLKPTRPFNSPGLRL
FT                 PQGLKLSPTIFSNALAEDLKPFRQLHPTVTLLQYVDDLLIASPTEESCKEA
FT                 TRDLLLCLEAAGYRVSAKKAHIARREVTFLGYRLHDGLRWLTPAMTQAILS
FT                 IPTPSSPRQVREFLGSVGYCRLWVPNFAETAKPLYAAARETSNWVWTEDME
FT                 IAFQDLRKAMLQAPALALPDPEKPYQLFVDERQGVAKGVLTQKLGPWDRPV
FT                 AYLSKRLDPVSAGWPSCLRIIAAVALLVKDADKLTHGQPLLIATSHAIESV
FT                 LRQPPVRWLSHARLTHYQSLLLNEARLSFRVVSTLNPATLLPTGDDNTETH
FT                 SCQEILVESISARPDLKDVPLANPDLLFFTDGSSFMSPQGRRAGAAVVDHT
FT                 GQVIWDASLPEGTSAQKAELIALAAALRAAKDKRVTIYTDSRYAFATLHVH
FT                 APIYRERGFVTSAGKSVAHLEDIQDLLAAVWEPRAVAVVHTPGHQSGSSLP
FT                 AMGNRWADEAAKAAATRDRAHTLVLPIQANPEPPGPPSLIPNPPPDPPQYS
FT                 DSDHQWIKGKEGRPVGSFFQDPAGNLLLPRIAGQLLTTHLHHLTHLGANKL
FT                 HELLRKGRIRFQGSRSFLTELVDKCTACQLTRPANPNSHPGTRLRGTRPCE
FT                 HWELDFTEVRPGKFGFRYLLVLVDTFTGWPEAFATKTETAHAVAKILLEEI
FT                 IPRFGVPSSLGSDNGPAFVAKTLQALAGGLGVKWKLHCEYNPQSSGQVERL
FT                 NRTLKEILTKLSLETGRDWVTLLPLALFKARNTPGPLSLTPYEILYGSIPP
FT                 PVLSAFPNATPSSPSLRDFVLSLSQIQSDLWPRLQARFQPPPHDPHPFKPG
FT                 DWVWVKRHRKANLQPRWKGPYVTLFVTPSALKVDGIGPWIHHSHVRAADPP
FT                 KATADPQEATEVWTATSHPDTPLKLKLHRTA"
FT   CDS           0..0
FT                 /product="ERV15_MD_I_2p"
FT                 /translation="PQSGSARTPKPPPFTSPPSLRETTNXPSPQETTISWP
FT                 LYSTPTAQVPPYHHPVRDNPLFPLLQASFSALNHSSPNLTEHCWLCLVASP
FT                 PYYEAFGLNASYTTSQEESPSQCQWGDSAPGNXVPGLTFSSVIGNGTCVAG
FT                 NSSRPDPRLCSATVHLSGGKYLIPPEGARWLCSRSGLQPCVSPTSLNDXLE
FT                 FCILVTIVPRVTYYTEQDLLQTWDHISSRRWRREPVTITIAITVATLLAAT
FT                 GAGVGIAALTTQAQGYHHLRKAVDEDIARLESSINFLEKSHASLAEVALQN
FT                 RRGLDLLFLKEGGLCAALGEECCFYVNHSGIIRDSLSKLREGLEARWXERE
FT                 TASPWYAHLFNSSPWLTTLVTSLIGPLIILILLLTFGPCIFNRLVRFMKDR
FT                 LDAIQVLALRQQYQPLATIEPRAEG"
XX
SQ   Sequence 8159 BP; 1756 A; 2684 C; 1938 G; 1763 T; 18 other;
     tttgggggct cgtccatctg cgagctcgtc ccttcccccc accttggaac cccttgacag        60
     aagggccaaa ggcactgcct tggaccggac cttcaggtga gccgagtggg gtgtgagagt       120
     gtgtgtgwgt gtggtgaccg caagtgtatg ggggagaaga ggactctcga tgagcatacg       180
     gcttagtgga tgatatgtgc ctgcggttta tacaggaaca ttctatgcca agctctgagg       240
     cccatcccgt tctggggtga gggggcttag ccccgcggca tctgtccgac cctcccacct       300
     gtttctgagt gtggactctg gagtaccgca gattctgtgt tcttcgcgag aaggccagtc       360
     gggaaccaga ggaagcgttt gtgatcagtc tgtggggtgg ggaaggaata cggtccaggg       420
     cacgtaccaa amttggaact ttcaggtggt ttgagtcccc tgaggacaga gtttttagtc       480
     tctgtcatac ggagttarag tctccgtcag gttgagagag cccygggygc ggagctccgt       540
     gtctccgcya ggtggccact gctctcaact ggtttgaagt ttcctccggg aaaggggttc       600
     ttagagtccc cttttgggaa gatattgcac ccctaagaga gaccggggga tgccccacga       660
     tctctaggtg atttttgtac agccctaggt ggctcttata gccctaggtg attttgtata       720
     gacacactgg gtctttttgg ccgcaaggga gggactgggc agccagcctc tgacaagcag       780
     tcaccagtat cgggattctt tgaactctcc ggtatcaccc ccctccttat cttactctct       840
     ctgatctatc tcctcatcct ctccttaacc tctggaccca atatgggtca gggccagtcc       900
     acccccctgg acctggtcct ccaacattat gctgacttta agtcaagagc tgcaaaccta       960
     agcctgacag ttcataaggg aaagttgcag actttctgta atgtagaatg gcccaccttt      1020
     gggtgcgggt ggccccgagg aggtacttgg cagaacagtg tcatctctgc catccggrgg      1080
     cggatcctcc tccctggacc agaagggcac ccagaccagg tcccctacat cttgacctgg      1140
     caagacttag ccttagatcc cccaccctgg ttgaaacctt atacggaggc tgtccacgtc      1200
     ctagtggctt cactagacga taagaccaag tccaggcggc cagcctgaga aacctaaccc      1260
     tgaaaagccc tttccgcccc tcccacctcc rgtcctccca ccacccgagg aacccctccc      1320
     tgaccctcct ctaccgcccc ctccctataa cccccagtta taccctcccc tcccccttga      1380
     tggaaacgag gcagcagcag tacagggagc aggcttaccc agccctcctc cagctcaccg      1440
     caccagaggc cgagtgcctt caatgcagct gccacctccc attccagcgg aagccccctc      1500
     ctctaccacc gtcctaccgg tccgcactgt tgggcccatg gtagaagggg gtccccttgt      1560
     tttccagtac tggcctttca cttcttctga cttgtataat tggaaacatc aaaatccccc      1620
     tttctctgag cagccccaaa agctaataga cctggttgag tctatttttc tcacccatag      1680
     tcccacctgg gatgactgtc agcaattact ccgcacgctc ttcactagtg aagagcgtga      1740
     tcggatcatt gctgaaggta aaaaagctgg ttcttgggga cgatgggaga cccaccactg      1800
     accctgcacg cctcgccgcg gcgttcccca ccgagcggcc tgactggaac ttcgccactg      1860
     atcaaggtag ggagcgtctt cagtcctacc gccagactct ccttgctggg cttcgggcag      1920
     cagcccgcaa acccactaat ttggctaaaa ttgattctgt taggcagggc cccgaggaga      1980
     cccctgccgc atttcttgag cggctgcagg aagctttccg catctattcc ccggtggacc      2040
     caacagcacc caatagccag acagctgttc tccttcttgc ttttgtcaat cagtcagccc      2100
     ctgatattcg caggaagctc cagagggctg atgcatttac agcccaatct ctaaccgaat      2160
     tacttaaggt agcagagaaa gtttttaact cccgcgaaac ccctgaggaa cgagctgacc      2220
     gactaagaca ggaggacatt gctagacagg aacagagaca gaaagaggcc gaagaacgag      2280
     aactcaagcg tttgcaggac ctccagtcta gggaagagaa ggctaggaag caattgatgy      2340
     ggacccaaca acagacaacc cgggtcctcg tggcagcctt aacccagtcc caaccccctc      2400
     cccctggtgg gcaaccgcct gaccagcgcc cacggggccc ctgtttcctc tgtgggaaaa      2460
     ttggccactg gcagcgtcac tgcccccaga aaatacaagg cggaatgagg caaggccggc      2520
     agggcccccc tcccccaagg cgctgggata gcccctccaa cacagactgg ggacggccca      2580
     ataggaatgt tattgccttt gctgaggatg actgaagggg acgggtctca ggtcccctcc      2640
     ctgagtcctg ggtaacggct tacattgagg ggaaacccct tcccatgctt gtggataccg      2700
     gagccgaaca ctcggtcctc ctgtcaccct tggggaagac cagttccaaa acctccttgg      2760
     tccaaggggt gacggggtcc agccgatacc cctggaccac agcatggact gtcaacctag      2820
     gaacccgcca agtttcccat tccttcctcg tcatccctga gagccctgct ccccttatcg      2880
     ggcgggacct cctccacaag atcggggccc atattcactt ttcccgtggg accgtgtccc      2940
     ttacagatga ttcaggggcc cccctcacgg tccttaccct agccctccag gatgaacacc      3000
     ttctatattc tgacccagcc cctctggaca ttcccccccc cccatgtgcg accgtgggtg      3060
     gactccattc ctaaggtctg ggctgaactt tctggagttg ggctggccat aaatcaacca      3120
     cccattatca tccccctcaa gagtggggcc acccctatat gggttaaaca atacccgatg      3180
     tcagctgagg ccagagacgg catccaacct cacattaagc gccttctggc ctccgggatc      3240
     ctcatgcctt gcaaatctcc atggaacacc ccactcctcc ctgtccgtaa accaggcaca      3300
     ggggattata ggcccgttca agacctgcgg gaagtcaaca agcgtattga ggatgtccac      3360
     cccaccgtcc caaacccata tactctcctt agcaatctac acccttccct gacctggtat      3420
     actactttgg acttaaagga tgccttcttc accctcccac tggccactgt tagtcagccc      3480
     atctttgcct ttgagtggtt ctcccctgaa acccactcga ccattcaact cacctggact      3540
     cagacttccc caagggctaa aactgagccc gaccatcttt agcaacgcat tggcggaaga      3600
     tttgaaacct tttcgccaac tacaccctac tgtgactctc ttgcaatatg tagacgactt      3660
     gctgatcgcc tctcccacag aggaatcctg caaggaggct acaagggacc tcttgctctg      3720
     cctcgaggcc gctggctatc gtgtcagtgc caagaaagca cacatagccc gccgagaggt      3780
     caccttcctt ggctatcgcc tgcacgatgg tctccgctgg ctcaccccag ccatgaccca      3840
     ggccatcctc tccatcccca ccccctcgtc gccccggcag gtacgggaat tcctgggatc      3900
     tgtgggatac tgtcgtcttt gggtgcccaa ctttgcagag acagcaaaac ccctctatgc      3960
     tgccgcccgg gaaacctcaa actgggtctg gacggaggac atggaaatag ccttccagga      4020
     cctccgaaag gctatgctgc aagcsccggc cctagccctt cctgacccag agaaacccta      4080
     tcagctgttc gttgacgaac gtcagggggt ggcgaaaggg gtcctcactc agaaactggg      4140
     accctgggac cggccggtgg cctacctttc caaacggctc gaccctgtct cggcaggatg      4200
     gccttcctgt ctccgcatca tcgcagcagt ggccctcctg gtcaaggatg ctgacaaact      4260
     tacacatggc cagccacttc tcattgccac ctcacacgcc attgagagtg tcctccgtca      4320
     gcctccggtg cgctggctgt cccacgctcg gctgacccac taccaatcgc tcctcctgaa      4380
     tgaggctcgg ctgtccttcc gggtagtgtc cacccttaat cccgccacgc ttctccccac      4440
     cggggatgac aacaccgaga cgcactcctg ccaagagatc cttgtggaat cgatatctgc      4500
     acggcctgac ctcaaggacg tccctctggc caatccggac ctcctcttct tcaccgatgg      4560
     cagcagtttc atgtccccac aaggtaggag agccggagcc gcggtagtag atcatactgg      4620
     ccaggtcatt tgggacgcct ccctccccga ggggacgtca gcacagaaag ctgaactgat      4680
     tgccttggca gcagccttgc gggcagcaaa ggacaagcga gtcactatat acacagacag      4740
     tcgctacgcc ttcgcgaccc tgcatgtgca tgcaccgata taccgggaaa gggggtttgt      4800
     cacttcagct gggaagtcgg tggcccacct cgaggacatc caagatctcc tcgcagccgt      4860
     ctgggagccc cgtgcagttg ccgttgtcca cactcctgga caccaaagtg gctcgtccct      4920
     ccccgccatg ggaaaccgct gggcagacga ggcggctaag gcagcggcaa cgcgggatcg      4980
     ggcccatacc ctagtgctgc ccatccaggc caacccagag ccaccaggcc ccccatctct      5040
     catcccaaac cccccaccgg accctccaca atattcggac agtgaccacc aatggataaa      5100
     agggaaggaa ggacggccgg ttgggtcttt cttccaggac cctgctggta acttgctttt      5160
     acctagaatc gctggccaac ttttgaccac ccacctccac catctcacac acctgggtgc      5220
     taacaaactc catgaactgc tccggaaagg acggattcgc tttcaaggct ctcggtcctt      5280
     cctaacagaa ttggtcgaca agtgcaccgc ctgccagctg acccggccgg caaacccgaa      5340
     ctcgcacccc ggaacccgcc tccgcggcac ccgaccctgt gaacattggg aactcgattt      5400
     cactgaagta cggcctggca aatttggatt ccggtacctc ctagttcttg tagacacctt      5460
     cacagggtgg cctgaagctt ttgcaacaaa gactgaaact gcccatgcag tcgctaaaat      5520
     cttgctggaa gaaataatcc cccggttcgg ggtgccctcc tctctaggct cggacaatgg      5580
     ccctgcattt gtggccaaga ctctacaggc actggcaggg ggtctcgggg tcaaatggaa      5640
     attacactgt gagtataacc cccagagttc agggcaggta gaaagattga atcggaccct      5700
     aaaagagatt cttactaaac tctctttgga gactggccgg gactgggtga cgctccttcc      5760
     cctagccctt tttaaggccc gcaatacccc tgggcccctc tccctcaccc cttatgaaat      5820
     cctttatggt tcaatcccac cccctgtcct ctccgccttc ccgaatgcga cccccagtag      5880
     cccctcattg cgggactttg ttctctccct ctctcagatc cagtctgacc tctggccgag      5940
     gctccaggca cggttccaac ctcctcccca tgaccctcac ccttttaaac ctggggattg      6000
     ggtctgggtt aagcgacacc gcaaggccaa ccttcagcca cggtggaagg gaccctatgt      6060
     aaccctcttt gtcacccctt cagctcttaa ggtcgacgga attggccctt ggatccacca      6120
     ctcccacgtg agagccgcag acccaccaaa ggccaccgca gacccacagg aggccaccga      6180
     agtctggaca gccacatccc atcctgacac tcctctgaag cttaaacttc accggacagc      6240
     atgaccctcc catttgccct ccctttctct cgcttgtttt ctctctattc tacaggcagg      6300
     gttctcccac cagccatgga aatggtccct catcagcttt gaacacctcc acaacgcttg      6360
     ccacagtcat aacctcaggg actcctagtc ttcaaaccaa gacttgtgac cttatatggg      6420
     gacctaagga catacgtgcc cccccccccc ggtaaaaccc ctgaatccag tctgtaggaa      6480
     cactggagta ttttaccttt gccctgcctc taaccctggg aartcttact gcaaccagcc      6540
     aaaccaatac tattgtgcca attgggggtg cgagactata gtcactggag ggaatactyg      6600
     gcacggctgc aacccatgga ccccatcaaa ccctgactcc tggttgacag tgaaatgggg      6660
     tccccatgac tgtggtcatc actgcagccg ccgtgacccg tacccgaaaa tcgagtgcaa      6720
     ccagctcatc ctggagcccc tccaggccac cgaccaatct tgggtcctgg gcaggacctg      6780
     gggaatctag tggtatagat cccacaatgg cgggcagcaa ttgggaggct tattcatgct      6840
     tcggaaagag cccatcttgc ccccgcctca tacccagtgg gacccaatct ggtacttaac      6900
     cccagtcagg ttcggccagg acccccaagc cccctccctt tacaagtcct ccctccctgc      6960
     gggagaccac caattytccc tccccacaag agaccaccat ctcgtggccc ctgtactcca      7020
     cccctaccgc ccaagttccc ccttaccacc atcccgtacg tgacaacccc ctttttcccc      7080
     tactacaagc ctccttttcr gccctcaacc attcctcccc caacctcact gaacactgct      7140
     ggctttgcct agtcgcatcc ccaccctatt atgaggcctt tggcctgaat gcctcctata      7200
     ccacctctca ggaggaaagc ccatcccagt gccaatgggg tgactcagcc cctggtaacy      7260
     yggtccctgg cctaaccttc tcttcagtca ttgggaatgg cacctgtgtg gcaggcaatt      7320
     ccagccgccc agatccccgc ctctgctcag ctacagtcca cctctcagga gggaaatatc      7380
     ttatcccccc tgaaggggcg cgatggctgt gttcccgctc tggtctccag ccttgcgtct      7440
     ctcccacctc cctcaatgac crcctcgagt tctgcattct cgtgacaata gtcccccgag      7500
     tgacctatta tactgagcag gacctccttc aaacatggga ccacatatcg tctaggcgat      7560
     ggaggcgaga acctgtcact attactatcg ccatcactgt agccaccctc ttagcagcaa      7620
     caggggcagg ggtgggcatc gccgccctca ccacgcaggc tcaggggtac caccacctcc      7680
     gcaaggcagt cgatgaggat atagctaggc tagaatcctc tattaacttc cttgagaagt      7740
     cccatgcctc cttagccgag gttgcccttc aaaatcgacg aggcctggac ctcctcttcc      7800
     ttaaggaggg aggcctctgt gcagccttgg gtgaagaatg ctgcttctat gttaaccact      7860
     cggggattat cagggactcc ctgagcaagc tacgagaagg tctagaagcc cggtggargg      7920
     agagagaaac tgctagcccc tggtacgccc acctttttaa ctcttctccc tggctcacta      7980
     ccctagtcac gtcccttata ggacccctta taatcttaat cctactctta acatttggcc      8040
     cctgcatttt taaccgcctt gttcggttca tgaaagaccg gctggatgcc atccaggtgt      8100
     tggccctccg acaacagtac caacccctag ccaccatcga gccccgggct gagggctac       8159
//
ID   Carsat2     repbase; DNA   ; MAM   ; 456 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Satellite from carnivores.
XX
KW   Satellite; Simple Repeat.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-456
RA   Smit A.F.;
RT   "Carsat2 - Satellite from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Clearly related to CarSat1. Units are about half as long; Within
CC   the CarSat1 unit one can see remnants of a duplication, so i
CC   think CarSat2 is the precursor (or close to the common ancestor
CC   at least). 4 identical units in consensus to overcome extended
CC   matches to CarSat1 (not sure if really a problem).
XX
SQ   Sequence 456 BP; 116 A; 100 C; 109 G; 104 T; 27 other;
     gtaggtgtgg aggcgcnatg gaaatgcgct gtactnaact ctgagaaaca agcgttcctt        60
     gaatgcagct ttcnactagc ctctcacnta ngggagttag aanctanctc cacagtaggt       120
     gtggaggcgc natggaaatg cgctgtactn aactctgaga aacaagcgtt ccttgaatgc       180
     agctttcnac tagcctctca cntangggag ttagaancta gctccacagt aggtgtggag       240
     gcgcnatgga aatgcgctgt actnaactct gagaaacaag cgttccttga atgcagcttt       300
     cnactagcct ctcacntang ggagttagaa nctanctcca cagtaggtgt ggaggcgcna       360
     tggaaatgcg ctgtactnaa ctctgagaaa caagcgttcc ttgaatgcag ctttcnacta       420
     gcctctcacn tangggagtt agaanctanc tccaca                                 456
//
ID   CarLTR1A2B_LTR repbase; DNA   ; MAM   ; 416 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-416
RA   Smit A.F.;
RT   "CarLTR1A2B_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   (4 or 5 bp dups); 12-13% subst.
XX
SQ   Sequence 416 BP; 115 A; 112 C; 76 G; 111 T; 2 other;
     tgatgtgggg aacaaaggca gaaggaaatg tagataaaat taaatttcct tataacctgc        60
     agcccattga caaatacttg aggcaggcag agtatgacat tcctccagga aactcccaac       120
     tgtcttaatg ttaatgcctt gctagaggga aaaacaacct tagcttgaca atagcnaggc       180
     ctccaggatc ctgtgagtct tctttagcat atgaaagtcc ttttggaaac ttcccttgtc       240
     tttacctccc ccaactccan agtatataat cagttgctcc tcacaatccc ggggcagcag       300
     ctctttctgc ccacgggtcc tgtccccgtg ctttaataaa accacctttt tgcaccaaag       360
     acgtctcaag aattctttct tggccgtcgg ctccgaaccc caacatttcc acatca           416
//
ID   TIGGER2     repbase; DNA   ; MAM   ; 2718 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 3)
XX
DE   Autonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat;
KW   Autonomous DNA transposon; TIGGER2; Tc1/mariner supergroup.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-1998).
XX
CC   [2] (Consensus)
XX
CC   TIGGER2 is a pogo-like DNA transposon of the mariner-Tc1 family.
CC   The open reading fraim from pos. 603-2486 encodes a transposase
CC   59%
CC   identical to that of TIGGER1. Average divergence of copies 12%.
CC   24 bp terminal inverted repeats, TA target site
CC   Includes MER28 (bases 1 to 59; 2343 to 2708) (see there for
CC   refs).
XX
SQ   Sequence 2718 BP; 882 A; 549 C; 585 G; 700 T; 2 other;
     cagttgaccc ttgaacaaca cgggtttgaa ctgcgcgggt ccacttatac gcggattttt        60
     ttcaataaat atattggaaa attttttgga gatttgcgac aatttgaaaa aactcgcaga       120
     cgaaccgcgt agcctagaaa tatcgaaaaa attaagaaaa agttaggtat gtcatgaatg       180
     cataaaatat atgtagatac tagtctattt tatcatttac taccataaaa tatacacaaa       240
     tctattataa aaagttaaaa tttatcaaaa cttacgcaca cacttacaga ccgtacatgg       300
     cgccattcgc agtcgagaga aatgtaaaca aacgtaaaga tgcagtatta aatcataact       360
     gcataaaatt aactgtagta catactgtac tactgtaata atttcgtagc cacctcctgt       420
     tgctattgcg gtgagctcaa gtgttgcgag tatccgctta aaacgccatg tgacgctaat       480
     catctccgcg tgagcagttc gtctctccag taaattgcgt atcgcagtaa aaagtgatct       540
     ctcgcggttc tcgcgtattt ttcatcgtgt ttagtgcaat accgtaaacc ttgaataaca       600
     ccatgggacc catacgaagt gccactagtg atgctggaag tgctcccaag aagcagagaa       660
     aagtcatgac attacaagaa aaagttgaat tgcttgatat gtaccgtaga ttgaggtctg       720
     cagctgcggt tgcccgccat ttcaagataa atgaatccag cataaggacc attgtaaaaa       780
     aagaaaagga aattcgtgaa gccgtcgctg cagctatgcc agcaggcgcg aaaaccttgc       840
     actttttgcg aaataccttt ttatctcgta ttgaaaatgc agcttttatg tgggtgcagg       900
     attgctataa gaaaggcata cctatagact ctaatatgat tcgagaaaaa gcgaagtcat       960
     tatatgacaa cttaaagcaa aaggaaggtg aaggatctaa agctggagaa tttaatgcca      1020
     gcaaaggatg gtttgataat tttagaaaga ggtttggctt naaaaatgtc aagataacag      1080
     gagaagcagc ttctgccgac caagaggcag cagacgagtt cccagatgcc attaagaaaa      1140
     tcattgagga gaaaggatat ctgcctgaac aggtttttaa tgcagacgaa agtgccctat      1200
     tctggaggaa aaaaatgcca caaaggacat ttattagtaa ggaagagaag caagcaccag      1260
     gatttaaggc aggaagggat aggctaactc tactgttttg tgcaaatgca gtcgggttta      1320
     tgatcaggac tgcccttatc tataaagctg ctaacccccg agccttgaag ggaaaagata      1380
     aacaccagct gccagtcttt tggttgtaca acaagaaggc ctggacaacg agaacccttt      1440
     ttctggattg gttccatcga tgctttgtcc ctgaagtcag gaagtacctt gccagtaagg      1500
     gactgccttt taaagttctt ttgatattgg acaatgcccc tggccaccca gaaccccatg      1560
     agttcaacac cgaaggcgtc gaagtggtct acttgccccc aaacacaacg tctctaattc      1620
     agcctctaga tcagggggtc ataaggacct ttaaggctca ttacacacgg tactctatgg      1680
     aaaggattgt caatgctatg gaagagaacc ccaatagaga gaacatcatg aaagtctgga      1740
     aggattacac cattgaagat gccatcgttg ttacagaaaa agccgtgaaa gccatcaagc      1800
     ccgaaacaat aaattcctgc tggagaaaac tgtgtccaga tgttgtgcat gacttcacag      1860
     gatttacgac agagccaatc aaggaaatca tgaaagagat tgtggatatg gcaaaaaagg      1920
     tggggggtga agggtttcaa gatatggatc ttggagaaat tcaagagcta atagacacca      1980
     caccagagga attaacagaa gacgacttga tggagatgag tgcttccgaa ccagtgccag      2040
     acgatgagga agaagacgta gaagaagcag tgccagaaaa caaattgaca ttagacaatc      2100
     tggcagaagg gttccgatta ttcaagactg cttttgactt cttttacgac atggaccctt      2160
     ctatgatacg ggcactgaaa ctaaagcaaa cggtggaaga aggattggta ccatatagaa      2220
     acatttttag agaaatgaaa aagcaaaaaa gtcagacaga aattacgatg tatttccata      2280
     aagttacacc gagtgtgcct gcctctcctg cctccccttc cacctcctcc acctcttccg      2340
     cctctgccac cctgagacag caagaccaac ccctcctctt cctcctcctc ctcagcctac      2400
     tcaacgtgaa gacgatgagg atgaagacct ttatgatgat ccacttccac ttaatgaata      2460
     gtaaatatat tttctcttcc ttatgatttt cttaataaca ttttcttttc tctagcttac      2520
     tttattgtaa gaatacagta tataatacat ataacataca aaatatgtgt taatcgactg      2580
     tttatgttat cggtaaggct tccggtcaac agtaggctat tagtagttaa gttttkgggg      2640
     agtcaaaagt tatacgcgga tttttgactg cgcggggggt cggcgcccct aacccccgcg      2700
     ttgttcaagg gtcaactg                                                    2718
//
ID   L1-7_MD     repbase; DNA   ; MAM   ; 3400 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   L1-7_MD, a subfamily of LINE1 element from Monodelphis domestica
DE   - consensus sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1-7_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-3400
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-3400
RA   Gentles A., Jurka J.;
RT   "L1-7_MD, a subfamily of L1 element from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(10), 316-316 (2005).
XX
CC   [2] (Consensus)
XX
CC   Approximately 17200 copies are present in the current genome
CC   assembly, with average similarity to the consensus of 83%. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
SQ   Sequence 3400 BP; 1380 A; 421 C; 830 G; 758 T; 11 other;
     caagcaaagg agaaagaacc caactattga tagctattat ggggacagag aagaactagc        60
     tcaaactcag aggacagtga agtaaaaaca tctacttcaa aaacagcaaa gaaatataat       120
     aaatgaccat gagcttaaaa agaactttaa aaaagacctc aaaaaccaaa tgagagaggt       180
     agagaaaaca awyagagara caaaaaaagc aatgcaagaa aattaagaaa attatgaaag       240
     atcacccaaa tggaaaaaag agatccagaa actcatagaa gaaaataatg tattaagaac       300
     tagaattaga caaagggaag ctaatgattt cataagacaa caagaaataa taaagcaaaa       360
     tcaaaagaat gaaataatag aagagaatat gaaacatctt atcacaaaac aactgacctg       420
     gaaaatagat caaggagaga caatataaga atagttggac tcccagaaag ttacaattag       480
     aaaaaaaaga gtttagacac catactccaa gaaatcatca aggaaaactg cccagacatt       540
     aattctagaa tcagagggta aaatagaaat tgaaagaatc cactaatcac cacctcaaag       600
     agacccaaag atgaaaatgc acaggaacat cattgctaag ttccatagct cccaggttaa       660
     ggagaaaata ctacaagcaa caagaaaaaa ataatttaaa tactgtggag ctayagtcag       720
     aataacacaa gacttagtag ccacaacatt aaaagaacac aggacatgga acacagcatt       780
     tcatagagca aaaaaaagaa ctgggcttac aaccaagata aataaagata acatatccag       840
     aaaatatcca gcaaagatga gcataattat aaaatgtaaa aaatggatat ttaataaact       900
     aaaggagttt caactattcc tggggaaaaa cccagaactc agcagaaaat ttgatctata       960
     agaaacatac aaaggtaatg aaagactaat cataagcaac ccaaaaggtc aaattgtttt      1020
     gattcctgta tgggaaaatg tcatctatgg cccctgggaa tggcatcatt gcctgggtat      1080
     tttgaagggg catgtatgga tggaagactt gaggttgagg tgaatgtaat ggaatgagcc      1140
     aaaatggtag tggaatagac caggaggagg tagggtggaa tggctatctc atatggagga      1200
     ggaatgagtg gaggaactgc catrgagaag gggaggaggg ggtggagggc tggtagtact      1260
     agaaccctac tctcatcaga cctgggataa agagagaaca acatacacaa ttagaagggt      1320
     aaaaatcttc ttaatgtaca gagaaacagg agggaaaggg gggatgggat aagggaggga      1380
     ctgggagtcc ccttggggga ctragggaat aagagaagga agggtgggtt aagagaaagg      1440
     aggacaaggg gataagaaaa ggggagggaa gggagggata cctagagggg agtacatatc      1500
     aagaggtagg ggggtaagrt gaggggataa gggagggact cttaggacaa gataggggag      1560
     ggatttttag aattgaactc atatcaagaa gtaggagggc atggttgggg ggataaggaa      1620
     gggatttttg gaaaggtgga tagaataaga attaaaaggt aagggggaag ggacaaggga      1680
     gggacctttg gaaaggtggg ccaatttgga actaggaggg caaggggaga ggataaggga      1740
     ggacttttgg ggaaggggtg tgaattggag aggtattggt caaaggaaat tggacatctg      1800
     aggagggata yagcagaaag aaaggaagag ggggacaaac agtgaggagg aatggagtag      1860
     atggaaatgc acagctagta actatgacat tgagtgtaaa tgggatgaat tcacccatgg      1920
     gaagaaaatg gatagcagaa aggataaaaa accaggacct gacaatgtgt tgtttacaag      1980
     aaacacactg aaaatgagag acacacatag agtgaaggtg aggggctgga gcagaatata      2040
     ctatgcctca gctgatccag agaaggcagg ggtagtagtc atgatctctg acagagttgg      2100
     ggctaaaatg gatataattg gaagggatga acagggtaac tatattatgt tggagggtgg      2160
     gtactatgga taatgaagca ttatcaatat tggacctgta tgcaccaaga gttatagcat      2220
     ccagattttt aaaggaaaaa ctaaatgaga tacagatagg aaatagataa caaaataata      2280
     atagtagggg actttaattt tctccctctc agaactagat aaatctaacc aaaaaataaa      2340
     taagaaagaa gttaaggaga taaatagaac cttagataag ttaaatatga tagatatctg      2400
     gagawgatcc cacacacacc tgcatgaggc tagtagtaga tctaagcctg agcatacaca      2460
     taatccaaac atagtttctg gtgggacaac aatggtttag agagcataat aaatattctg      2520
     caaaagtctt actttaacac tcatcatact atggaggtaa tcctgcattc ctgaggggtt      2580
     gtggcattgg gaacaaaagt tccactgggt atgaccaagc tggaaagact tggttttgga      2640
     aagagtatgg tcctggcaac agattgtgtc tgctgcctaa ggaccaatct agctaaatat      2700
     ggccctggta atgtatgtta actgagaacc agataggtta aattgatcaa attaaatgct      2760
     gataggaata tggagaaaca ggcctaatat tacattgcta gagcagctgt gaattgtttt      2820
     ttagaaaaca agatggaaat atacattaag agctgtaaag ctgttcatgc ttattgacct      2880
     agggaatccc attactagga ttaggcccta agggcattat tgagagggta aaaagctgtg      2940
     tatatatgaa aatattcatg gaagctttgt ttgtaatgac aaaataactg gaaataacac      3000
     aaatgcaatg attgggagaa atggctgaat agattgtgat atttgaatgt aatggattat      3060
     attatgttat tagaaatgac aaatattgga aatataaaga aaataagkga aatataagaa      3120
     gataaagaga agaaaagaga ataagaataa tacatactat gattacattt taaaaatagc      3180
     cacaaaatca agagaaaaaa tatcaaagta aaacaaatcc aaagggaact caaaagcaga      3240
     ggatgtttat attagcacac atatataatt tayatatttt taaacaaatt gtaaacaatg      3300
     tggagtttgt ggttttgcac ataattttta tgcatttgtt tatttaaaat tttttttgtt      3360
     ggtggtggtg gttactaagt atataataaa aaaatggaaa                            3400
//
ID   L1MC3       repbase; DNA   ; MAM   ; 2487 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MC3) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1MC3; L1MC3 subfamily; MER42A;
KW   Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1187-2487
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-2487
RA   Smit A.F.;
RT   "L1MC3..";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [2] (Consensus)
XX
CC   Replaces MER42A.
XX
SQ   Sequence 2487 BP; 938 A; 407 C; 481 G; 600 T; 61 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgawacya ctatatacgt atannaraat      1200
     taaacaaata agtaaatgta tkgtagatga tgggagccag gtttctcact gtcggagtga      1260
     ggagttacag ataagcaaag ggaggagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccgctg agagggccta gaagcaacga caccccagta gcaatgagca cacctagcac      1440
     ccagatcttg gtttctaata ccattctcca ataaaaggaa ccagggctcc ttggagaaat      1500
     ggctgattct aggactaggg caggaaatat acaagatgag cctggaacat cttgcartgc      1560
     cagaaaataa ggaagtgctc aaaaacacaa tgatrggggt atgtcaaagg gacacagrag      1620
     ccaactgaaa gagctcccaa tggccaaagc tggaacaatt tgagcaacaa aataaattat      1680
     rgtagtattg gattataacy caaagtataa aataaatatc catgagtcca tactgatata      1740
     aatgaatgat taaataaata aataaattga gaagataaat aagtctctnn tgcagaagaa      1800
     tttcaaataa tttatgtaga tarcctnccc tcaaggaagt ggagcgtaac tccccactcc      1860
     ttaagtgtgg gatggatata gtgacttcct tccagaaagc atagtatagg acggaaaaaa      1920
     aagtaaattt acwgtagaga aacctgacaa acactacctt agccaggtaa tcaaagttag      1980
     catcaacaat tgtaagtcat gttgatagya tatacccttg atatgatgtg ataagaatgg      2040
     cacttcacct ccgtggtctt cctcccaaaa acccataacc ccagtctaat catragaaaa      2100
     atatcagaca aattccaact gagggacatt ctacaaaata cctgaccagt actcctcaaa      2160
     actgtcaagg tcatcaaaaa caaggaaagt ctgagaaact gtcacagcca agaggagcct      2220
     aaggagacat gacaactaaa tgtaatgtgg tatcctggat gggatcctgg aacagaaaaa      2280
     ggacattagg taaaaactaa ggaaatctga ataaagtatg gactttagtt aataataatg      2340
     tatcaatatt ggtttattag ttgtgacaaa tgtaccatan taatgtaaga tgttaayaat      2400
     aggggaaact ggatgtgggg tatatgggaa ctctctgtac tatttttgca actttcctgt      2460
     aaatctaaaa ctatttcaaa ataaaat                                          2487
//
ID   MER58A      repbase; DNA   ; MAM   ; 224 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   hAT DNA transposon from placental mammals.
XX
KW   hAT; DNA transposon; Interspersed Repeat; CHESHIRE_A; MER58A.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-224
RA   Smit A.F.;
RT   "MER58A - hAT DNA transposon from placental mammals..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   22% div.
XX
SQ   Sequence 224 BP; 54 A; 61 C; 54 G; 55 T; 0 other;
     caggggtcgg caaactacgg cccgcgggcc aaatccggcc cgccgcctgt ttttgtaaat        60
     aaagttttat tggaacacag ccacgcccat tcgtttacgt attgtctatg gctgctttcg       120
     cgctacaacg gcagagttga gtagttgcga cagagaccgt atggcccgca aagcctaaaa       180
     tatttactat ctggcccttt acagaaaaag tttgccgacc cctg                        224
//
ID   LINE_CH     repbase; DNA   ; MAM   ; 1554 BP.
XX
AC   X72221;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   C.hircus LINE element.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; CHLINE;
KW   LINE element; LINE_CH.
XX
OS   Capra hircus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Caprinae; Capra.
XX
RN   [1]
RP   1-1554
RA   Jansa M., Leroux C., Sanchez A., Martin P.;
RT   "Occurence of a LINE Element in the 3' UTR of an Allelic Form of
RT   the Goat Alpha S1 Casein Gene Associated with a Reduced Level
RT   Protein Synthesis.";
RL   Unpublished.
XX
RN   [2]
RP   1-1554
RA   Jansa M.;
RT   "LINE_CH.";
RL   Direct Submission to Genbank (27-MAY-1993)M. Jansa, Inst National
RL   de la Recherche Agronomique (INRA), Lab de Genetique Biochimique,
RL   INRA-CRJ 78350, Jouy-en-Josas, FRANCE.
XX
DR   GenBank; X72221; Positions       1    1554.
XX
SQ   Sequence 1554 BP; 418 A; 357 C; 259 G; 520 T; 0 other;
     agtcttgggt tcaagatctt gacaaccatg aaacttctca tccttacctg tcttgtggct        60
     gttgctcttg ccaggcctaa acatcctatc aatcaccaag gactctctcc agaagtcccc       120
     aatgaaaatt tactcaggtt tgttgtggcg ccttttccag aagtgtttag aaaggagaac       180
     atcaatgaac tgagtaagga tattgggagt gaatcaactg aggatcaagc catggaagat       240
     gctaagcaaa tgaaagctgg aagcagttcg tcaagtgagg aaattgttcc caatagtgct       300
     gagcagaagt acattcaaaa ggaagatgtg ccctctgagc gttacctggg ttatctggaa       360
     cagcttctca aactgaagaa atacaacgtg ccccagctgg aaattgttcc caaaagtgct       420
     gaggaacaac ttcacagtat gaaagaggga aaccctgccc accagaaaca gcctatgata       480
     gcagtgaatc aggaactggc ctacttctac cctcagcttt tcagacaatt ctaccagctg       540
     gacgcctatc catctggtgc ctggtattac cttccactag gcacacaata cactgatgcc       600
     ccctcattct ctgacatccc taatcccatt ggctctgaga acagtggaaa ggctgctatg       660
     ccactgtggt gaagagtcaa gtgaattctg aaggactcca caattatggt ctttgatgga       720
     attgaaaatt ccatgcttta catgtctttt catctatcat gtcaaaccat tctatccaaa       780
     ggcttcaatt gctgttttag aataggacaa cctcaaattg aaggcactct ttcttctttt       840
     tttttttttt tttttttttc ttactgaatg acttttttat ttttattttt attttttatt       900
     tatttttttt tatttttttt ttttaatttt taatttttat ttttaaattt taaaatcttt       960
     aattcttaca tgcgttccca aacatgaacc cccctcccac ctccctcccc acaacatctc      1020
     tctgggtcat ccccatgcac cagccccaag caagctgcac cctacgtcag acatggactg      1080
     gcgattcaat tcttacatga cagtatacat gttataattc ccattctccc aaatcatccc      1140
     accctctccc tctccctctg agtccaaaag tctggtatac acatctgtgt ctttttccct      1200
     gtcttgcata cagggtcgtc attgccatct tcctaaattc catatatatg tgttagtata      1260
     ctgtattggt gtttttcttt ctggcttact tcactcagtt ctctactgta ttttagattg      1320
     tgtaacatcc ttaagtgaaa ttgtcctaag agcttgttac ctaaattcca gtagtatcac      1380
     gctggtataa aggccactga ctcaaaggga attacagtct tcattaaatt tctatatgga      1440
     aaatgttttt aaagcctttg aatcacctct cctgtaagtg ccatcatttc aaataactgt      1500
     gtgcagtaac tgagattttg tctttcttct tttcaataaa ttacatttta aggc            1554
//
ID   TIGGER1     repbase; DNA   ; MAM   ; 2418 BP.
XX
AC   .
XX
DT   01-MAY-1996 (Rel. 1.04, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Autonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MER37;
KW   Repetitive sequence; Tigger1.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   108-229
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment..";
RL   Nature Genet 3, 137-145 (1993).
XX
RN   [2]
RP   1-550
RA   Lutfalla G., McInnis G.M., Uze G.;
RT   "Structure of the human CRFB4 gene: comparison with its IFNAR
RT   neighbour..";
RL   J. Mol. Evol 41, 338-348 (1995).
XX
RN   [3]
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [3] (Consensus)
XX
CC   23 bp terminal inverted repeats, TA target site
CC   ORF1: bases 425 to 1789; ORF2: bases 1811 to 2206.
XX
SQ   Sequence 2418 BP; 753 A; 472 C; 517 G; 668 T; 8 other;
     caggcatacc tcgttttatt gcgcttcgct ttattgcgct tcgcagatac tgcgtttttt        60
     acaaattgaa ggtttgtggc aaccctgcgt tgagcaagtc tgtcggcgcc atttttccaa       120
     cagcatgtgc tcacttcgtg tctctgtgtc acattttggt aattctcgca atatttcaaa       180
     ctttttcatt attattatat ctgttatggt gatctgtgat cagtgatctt tgatgttact       240
     attgtaattg ttttggggtg ccacgaaccg cacccatata agacggcgaa cttaatcgat       300
     aaatgttgtg tgtgttctga ctgctccacc gaccggccgt tcccccgtct ctctccctct       360
     cytcgggcct ccctattccc tgagacacaa caatattgaa attaggccaa ttaataaccc       420
     tacaatggcc tctaagtgtt caagtgaaag gaagagtmrc acatctctca ctttaaatca       480
     aaagctagaa atgattaagc ttagtgagga aggcatgtca aaagccgaga taggccaaaa       540
     gctaggcctc ttgcgccaaa cagttagcca agttgtgaat gcaaaggaaa agttcttgaa       600
     ggaaattaaa agtgctactc cagtgaacac acgaatgata agaaagyaaa acagccttat       660
     tgctgatatg gagaaagttt tagtggtctg gatagaagat caaaccagcc acaayattcc       720
     cttaagccaa agcctaatcc agagcaaggc cctaactctc ttcaattcta tgaaggctga       780
     gagaggtgag gaagctgcag aagaaaagtt tgaagctagc agaggttggt tcatgaggtt       840
     taaggaaaga agccatctcc ataacataaa agtgcaaggt gaagcagcaa gtgctgatgt       900
     agaagctgca gcaagttatc cagaagatct agctaagatc aytgatgaag gtggctacac       960
     taaacaacag attttcartg tagatgaaac agccttctat tggaagaaga tgccatctag      1020
     gactttcata gctagagagg agaagtcaat gcctggcttc aaagcttcaa aggacaggct      1080
     gactctcttg ttaggggcta atgcagctgg tgactttaag ttgaagccaa tgctcattta      1140
     ccattctgaa aatcctagag cccttaagaa ttatgctaaa tctactctgc ctgtgctcta      1200
     taaatggaac aacaaagcct ggatgacagc acatctgttt acagcatggt ttactgaata      1260
     ttttaagccc actgttgaga cctactgctc agaaaaaaag attcctttca aaatattact      1320
     gctcattgac aacgcacctg gtcacccaag agctctgatg gagatgtaca aggagattaa      1380
     tgttgttttc atgcctgcta acacaacatc cattctgcag cccatggatc aaggagtaat      1440
     ttcgactttc aagtcttatt atttaagaaa tacattttat aaggctatag ctgccataga      1500
     tagtgattcc tctgatggat ctgggcaaag taaattgaaa accttctgga aaggattcac      1560
     cattctagat gccattaaga acattcgtga ttcatgggag gaggtcaaaa tatcaacatt      1620
     aacaggagtt tggaagaagt tgattccaac cctcatggat gactttgagg ggttyaagac      1680
     ttcagtggag gaagtaactg cagatgtggt ggaaatagca agagaactag aattagaagt      1740
     ggagcctgaa gatgtgactg aattgctgca atctcatgat aaaacttgaa cggatgagga      1800
     gttgcttctt atggatgagc aaagaaagtg gtttcttgag atggaatcta ctcctggtga      1860
     agatgctgtg aacattgttg aaatgacaac aaaggattta gaatattaca taaacttagt      1920
     tgataaagca gcggcagggt ttgagaggat tgactccaat tttgaaagaa gttctactgt      1980
     gggtaaaatg ctgtcaaaca gcatcacatg ctacagagaa atctttcatg aaaggaagag      2040
     tcaattgatg cggcaaactt cattgttgtc ttattttaag aaattgccac agccacccca      2100
     accttcagca accaccaccc tgatcagtca gcagccatca acatcaaggc aagaccctcc      2160
     accagcaaaa agattacgac tcgctgaagg ctcagatgat cgttagcatt ttttagcaat      2220
     aaagtatttt taaattaagg tatgtacatt gttttttaga cataatgcta ttgcacactt      2280
     aatagactac agtatagcgt aaacataact tttatatgca ctgggaaacc aaaaaattcg      2340
     tgtgactcgc tttattgcga tattcgcttt attgcggtgg tctggaaccg aacccgcaat      2400
     atctccgagg tatgcctg                                                    2418
//
ID   ERV6_MD_I   repbase; DNA   ; MAM   ; 7242 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV6_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV6_MD_I;
KW   RNaseH; integrase; reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-7242
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-7242
RA   Gentles A., Jurka J.;
RT   "ERV6_MD, a class 1 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 385-385 (2005).
XX
CC   [2] (Consensus)
XX
CC   Copies of this element in the genome average around 90%
CC   similarity to the consensus. Two ORFs putatively encode reverse
CC   transcriptase, integrase functions. The LTR is deposited as
CC   ERV6_MD_LTR. This consensus was reconstructed from the June 2005
CC   release of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV6_MD_I_1p"
FT                 /translation="KLFTVDYNNSYSPGYTLLSLNVNMSGDMVIDVLMVLW
FT                 ECILHIPYIVFVLFPNVCYVGLDYRWMKPFMDITMQTVLSHVPIVCICLCV
FT                 LYKCRLAFFLIGKWFKVIMIWLTKDSELKLMVIHMKKQLDQMELYIKDNKF
FT                 INTEYGCGENVNTGAKENLNRLQQEEARGMVTLCPLRDLPVVSKNEIFQVK
FT                 THKRFTPEDLESIKKRTPAFVDEPNCVIKEMKRAIDIFDPDYNDFALLMKE
FT                 LLTKRECNKFIEETRSDPLLVPWPERYDMDMNDRAQYDVMKECRQAILEVM
FT                 GRYTKRPNAWSKFEGIKQKPTETPTSFLDRITEAAETYLNMDVLEEGTISH
FT                 IKRVFVKNAIPKIKLFFKNNYPDWEEMELEDIRQKATYLTMDNDGKYEDRD
FT                 TEMEDLKRKLREAELKAKESEIKEVKAVAALRSIKPNNNNYYKPRDRRSGP
FT                 QCCFLCNRVGHFVKECRFRGQFARQMNRYGGYNRNNNWNNNNNNYNNNNNG
FT                 WNNNYARRNNGNVCQNACCQGPQAPDLNTMQDWVKSGARPKYSQVVKGDQS
FT                 KGACSLRFPQCTSVIKSRDNEWRVNENECNGNKINEDIDELIESNDNIISV
FT                 NNCKEKENCNINLVENSNECKIRENSEECKLDNDNEIVNENNDTKMENIRT
FT                 KGSNEKADDGVKDAKSWEYHVVQADVNLDGQEMTELCTDVTVLAPVLETFQ
FT                 PPNSTEPYVSVTIGDQIYDLLVDTGASKSVLQSLPKNCRAVGTMEVIGATG
FT                 KPERVAKLQPKMITLGPLSVEHAFLCMPDCPMNLLGRDLLCKL"
FT   CDS           0..0
FT                 /product="ERV6_MD_I_2p"
FT                 /translation="SCDKDTSYCTKPSCYNFFHSKSGKIFHRGRFMLSVFL
FT                 DTIHEDSQKIFAFTWEKNQWTWTHLPQGYTNSLSQFSQILNRDLKTITFKE
FT                 SKIVHFVDDILLASPSAKVCLRDSKILLIELYKHGHKISKAKLQWVLPRVQ
FT                 YLGFVLSEGSRSITQKRIADIQKLSAPKTKKQLRAVLGTTGFCRQWIPGYS
FT                 ELTKCLTDLTRNTEPEPLKLKPEHLQALSKLKEAILSAPALGIPDYTKPFQ
FT                 LFVNETKGIASGVLTQTLGQSYHPIGYYSCQLDPIAAGTVPCLRGIAAAAV
FT                 LVQKSADLVLGCPLTVYCSHQIEALMRKFCTQAYSDQRISKYEIILLGSEN
FT                 IQLRRYSVLNPATLLPDLPKNECVEVVDLVDMPRMDLKDTPIENPDLVLFT
FT                 DGSSYLCNGIRCTGAAVVTEFETLWYESLPSNLSAQGAELVALKQACLLAD
FT                 GKSANIYTDSRYAFSVCHATGQIWKQRGFITALGKPIAHAEIITELLDAIQ
FT                 KPKQLAVIHCRSHTYGRDSVSKGNHRADITAKFAASNAPVYVMNLSTIESD
FT                 DLEKAYVDSEIQKWKEKFGARKEHGIWVADTGKPLLPKDLYTYLCQAIHTK
FT                 GHFGTQAVIDSVKRQWVAPGISTVANKICTSCSVCQKFNQGAFRQKGLGGR
FT                 PLAYCPFESLQIDYISMPKAGRYKFCLVIVDRLTKWPEAFPSNTNTASFVV
FT                 KVLIKEIIPRFGVPLTIDSDKGSHFTQDILKRVYENLGITPKYHVPYHPQS
FT                 SGQVECVNRELKTMVGKICAETHLKWPDILPIALFYLRTRPRADLHVSSYE
FT                 MLFGHAPLQAKTYKTVYTSLLGGDCQLASYLSALQQQLKELHDMGVLIQAG
FT                 PLDYSLHNFKPGDMVYVKNFAKTSAMQESWLGPYTIVLVSLSSVKVLDRDS
FT                 WYHCSHIKLAHGINNENVQIIEQEEIEEE"
XX
SQ   Sequence 7242 BP; 2574 A; 1063 C; 1449 G; 2156 T; 0 other;
     gtttggcaga gccagctagg tttaagaaat cttagaaaat taagttttat ttataggaaa        60
     aacagtttct atagggaagt cagttaggtt aaggttggaa tattccatcc ccactctgag       120
     agtggtacat tccaagggtg ggggccagca gaattctaag actccagcta agggggtaga       180
     gatatttaat aattaaatac ctttttgcca catgctttag gtggccatat tggtggccat       240
     attggaaatt tttttcaagt ttttcccttt tagtaattgt ttgtaaaaat tattcacagt       300
     ggattataat aactcttatt cacctggata tactttatta tccttaaatg taaacatgtc       360
     tggagacatg gtaattgatg ttttgatggt attgtgggaa tgcattttgc atatcccata       420
     cattgtgttt gtgttgttcc ctaatgtttg ttatgtagga ttggactata gatggatgaa       480
     accttttatg gatatcacaa tgcaaactgt cctgtctcat gtccccatag tttgtatctg       540
     tctttgtgtc ttgtataagt gtagactggc attctttctc attggtaaat ggtttaaagt       600
     gattatgatt tggttaacaa aggattcaga gctcaaacta atggtgatac atatgaaaaa       660
     acaacttgat caaatggaac tatatataaa agataataag tttataaaca cagaatatgg       720
     gtgtggggaa aatgtaaaca ctggtgcaaa ggaaaatcta aacaggttac aacaagaaga       780
     ggctagaggg atggttactc tatgtcctct aagagatctt cctgtagtct caaagaatga       840
     aatattccag gtcaagacac acaaaagatt caccccagag gacttggagt ccataaagaa       900
     aagaacccca gcctttgtag atgaacccaa ttgtgtaatc aaagagatga agagggctat       960
     agacatattt gaccccgatt ataatgattt tgcactatta atgaaggaac tattaacaaa      1020
     aagggaatgt aataaattta ttgaggagac aagatcagac cctctattag taccctggcc      1080
     agaaagatat gacatggaca tgaatgatag agctcaatat gatgttatga aggaatgtag      1140
     gcaagcaatt ttggaggtca tgggtcggta taccaaaaga ccaaatgctt ggtcaaaatt      1200
     tgaaggaata aagcaaaagc ccacagaaac accaacatca tttttagatc gtatcactga      1260
     ggctgctgag acatatctta atatggatgt acttgaagag gggacaattt cccatataaa      1320
     aagggtcttt gtaaaaaatg ccataccaaa aattaaacta ttctttaaaa ataactatcc      1380
     tgattgggag gaaatggagc tggaagacat taggcaaaag gcaacatatt tgaccatgga      1440
     taatgatgga aaatatgaag atagagatac agaaatggaa gatcttaaaa gaaagcttag      1500
     ggaagcagaa cttaaagcta aagaaagtga aataaaagag gttaaggcag tggctgcatt      1560
     gagatcaata aagcctaata ataataatta ctataagcca agggatagga gatcaggtcc      1620
     acaatgttgt ttcctctgta acagggttgg ccattttgtg aaagaatgca gatttagagg      1680
     ccagtttgca aggcaaatga acagatatgg aggatataat aggaacaata attggaataa      1740
     caacaataat aattataata acaataacaa tggttggaat aataattatg caaggagaaa      1800
     taatggaaat gtgtgtcaaa atgcctgttg ccaaggacca caagcaccag acctcaacac      1860
     tatgcaggac tgggttaagt ctggagcaag gcctaaatat agtcaggtgg ttaagggtga      1920
     tcagagcaag ggtgcatgtt ctttatgaag gtttccccaa tgtacttctg taattaaatc      1980
     aagggataat gaatggagag taaatgaaaa tgagtgtaat ggtaataaga ttaatgaaga      2040
     tatagatgaa ttgattgaat caaatgataa tataattagt gttaataatt gtaaggaaaa      2100
     agaaaattgt aatataaatt tagtagaaaa ttctaatgaa tgtaaaataa gggaaaatag      2160
     tgaagaatgt aaactggata atgataatga aattgtaaat gagaacaatg ataccaagat      2220
     ggagaatata aggaccaaag ggagtaatga aaaagctgat gatggagtta aagatgcaaa      2280
     atcctgggaa tatcatgtag ttcaagcaga tgtaaacttg gatggacagg aaatgactga      2340
     gctttgtact gatgttactg tgctagcacc agtattagaa acatttcaac ctccaaacag      2400
     cacagaacca tatgtatctg tgactatagg tgatcagata tatgatcttt tggttgatac      2460
     tggagccagt aaatcagttt tgcaaagtct tcctaagaat tgtagagctg tgggtacaat      2520
     ggaagtaata ggagctactg gaaaaccaga gagagtagca aaattacaac ctaaaatgat      2580
     tactttaggt cctttatctg tggagcatgc atttctttgt atgccagatt gtcccatgaa      2640
     tcttctaggt agggatttat tatgtaaatt atgagcaaca atccaatgta ctgatactgg      2700
     tgatatctca ttacatctac cagaagaatc tctgaaagct tttccattgc tgttcttaga      2760
     ttcagtcagt acagaggatg acttggattc aatctatcct atacctgagg atatccctga      2820
     agatttatgg tcaaagtctt ccacagatgt aggtctattg aaatcagcta ctcctgtaag      2880
     ggtgaggact aaggaaggac cagttccttg tgtacctcaa tatcccttaa gtaaagaagc      2940
     aatagagggt atcagaccaa tcattgaatc cctaatccaa caagggatca taataccttg      3000
     cttctcagaa tataatacac ctatacttcc aatcaaaaag ccaaagctag atcaaaatgg      3060
     caaagtagta tacagattca tacaggattt aagagctgta aatgatcatg tgataaagac      3120
     acatcctatt gtaccaagcc cagctgctat aatttcttcc attccaagtc aggcaagata      3180
     tttcaccgtg gtagatttat gctcagcgtt tttctcgata cgattcatga ggattctcaa      3240
     aagatctttg cttttacatg ggaaaaaaat cagtggactt ggactcatct tccccagggg      3300
     tataccaatt cactgagcca attctcacaa attttaaata gagatctaaa aaccataaca      3360
     ttcaaggaaa gtaaaatagt gcattttgtt gatgatatcc tccttgcatc cccaagtgct      3420
     aaagtgtgtc tcagagatag caagattctt ttgatagaat tatataaaca tgggcataaa      3480
     atctccaagg caaaattaca gtgggttttg cctcgagtgc aatatcttgg atttgtgtta      3540
     tcagagggtt ccagaagtat cacacagaaa agaatagcag acatccagaa actgagtgct      3600
     cctaagacca aaaagcaact cagagctgtt cttggaacaa ctggtttctg taggcaatgg      3660
     atacctggat atagtgaatt aacaaagtgt ttaacagact taaccaggaa tacagaacca      3720
     gaacctctga aactaaaacc tgaacatctg caagccttaa gtaagcttaa agaagccatt      3780
     ttatctgccc cagctctggg tatcccagac tatacaaaac catttcaact atttgtcaat      3840
     gaaacaaaag gtattgcttc tggtgtactg acacagactt taggacaaag ttatcatcca      3900
     attggatatt atagttgtca gcttgatcca atagctgctg gtacagttcc ttgtctaagg      3960
     ggtatagcag ctgcagctgt gttagtccag aagtcagcag atttagtttt gggatgtcca      4020
     ttgactgtat attgttcaca tcaaatagaa gcactaatga ggaaattttg tactcaagca      4080
     tattcagacc aacgaatatc taagtatgaa attatactcc taggtagtga aaacatccag      4140
     ttgagaaggt atagtgtatt aaatccagct acacttcttc ctgatttgcc aaagaatgag      4200
     tgtgtagaag tagtagatct agtggatatg cctaggatgg atttaaaaga cactccaatt      4260
     gaaaatccag acttggtgtt attcactgat ggttcttcat atttgtgtaa tggaattaga      4320
     tgtacaggtg ctgcagttgt cacagaattt gagacactgt ggtatgaatc attacctagt      4380
     aaccttagtg ctcaaggggc agagttggtt gctttaaagc aagcatgtct tctagctgat      4440
     ggtaaaagtg caaatattta tacagactct cgttatgcat tttctgtatg tcatgctaca      4500
     ggacagatct ggaaacaacg aggttttatt actgcattgg gaaaaccaat tgctcatgca      4560
     gaaataataa ctgagttgtt ggatgctatc caaaaaccta aacagctagc tgtgatccat      4620
     tgtagaagtc atacttatgg cagagattca gtctctaaag gaaatcatag agctgatata      4680
     actgcaaaat ttgctgccag taatgctcca gtgtatgtaa tgaatttgtc aactattgaa      4740
     tctgatgatc tagaaaaagc ttatgtagac tcagaaattc aaaagtggaa ggagaagttt      4800
     ggagcaagga aagaacatgg aatatgggtt gcagacactg gaaaaccact gttaccaaaa      4860
     gacttgtata cctatttgtg tcaagccatc cacacaaaag gtcattttgg tactcaagct      4920
     gtaattgact ctgtaaagag gcaatgggta gctcctggaa taagtactgt agctaataag      4980
     atctgtacaa gctgttctgt ttgccaaaaa ttcaatcaag gggcattcag acagaaaggt      5040
     ttaggtggta gacctttagc atattgtcca tttgagagtc tgcaaattga ttacatcagc      5100
     atgccaaaag ctggaagata caagttttgt ctggtaattg tagacagatt aactaagtgg      5160
     cctgaagcat ttccatcaaa tacaaataca gctagctttg tggtaaaagt gttgattaag      5220
     gaaattattc ctagatttgg agtaccactt accatagact ctgataaggg atctcatttc      5280
     acccaggata tcctgaaaag agtctatgag aatctaggaa taacacccaa atatcatgtt      5340
     ccttatcacc cacaaagttc aggtcaagtg gagtgtgtaa atagggaact caagactatg      5400
     gtggggaaga tctgtgctga aactcatcta aaatggccag atattcttcc catagctttg      5460
     ttttacctac gtacgagacc aagagcagat ttacatgtat catcctatga aatgctcttt      5520
     ggacatgctc cactacaggc aaagacttat aagacagtct atacatctct cttaggagga      5580
     gattgtcaac ttgcttctta cttaagtgct ttacaacaac aacttaaaga attacatgat      5640
     atgggagtat tgatccaagc tggtccattg gattattctc tccataattt caaaccagga      5700
     gatatggtat atgttaaaaa ttttgctaaa acatcagcaa tgcaagagag ttggttaggt      5760
     ccttacacca ttgtattagt atctctatct tcagtaaaag ttttggatag agattcatgg      5820
     tatcattgtt cacatataaa attagcacat ggtataaata atgaaaatgt acaaattatt      5880
     gaacaagaag aaattgaaga agaataaata gtagaaagtg agaatcatca aattgagtct      5940
     gcagtcagaa agatcagtaa ggagaggacc attccagtgg aagaggatgg aagaggacaa      6000
     tgcagatcaa gaggagaata caggaaatta atggacattg ttaaaagact gaaactatat      6060
     aaatttaaag actttgagaa acttgcaatg aaaaggatca taggattaat ggactaatga      6120
     attaaaattt tgggtaatgt attataacac aaaacaacat aacacatatt cacaaacatt      6180
     cataaatata tttactacca tggagttgga gaagaattat tcaagcaaga tgagatgaaa      6240
     agaggaggaa aaatctgaag tagtggtaag tatattacat gcaacagtaa cataacatta      6300
     acataacagt aacataacat gcaaaacaac ataacatagc aaaaataaca acataaaaaa      6360
     cataaacaca aatacataaa catggttagg ttacattgaa tcactatgtg aatgagtgaa      6420
     acaatgtata gttagggtac taacaatgtt ataagtagtt ataaattagt tactaacaaa      6480
     aattaggtag atacttaatt tagtatagaa atataactag acaggagaat tttattaaga      6540
     tagggcttta gttagataaa gattaaaatt taagataaat aagataagat aaggtactga      6600
     cttgcattac aacatacata acaacataca ttacataaca caaataacaa tatcacacaa      6660
     aattgtaaat acatatgtaa atagtgtgta taataggatt gtaaattaat tgtattataa      6720
     tgtatatgta tatatgtaac atatgtgtat atatgtgtaa atatgaagta tgtaggtgta      6780
     gcacatgcat atattgtatg tatgtactat gtgtatatgt gtataattta tgtaaataga      6840
     tcacttatgt acctattgtt acatgtagtt tgcataagtg tttaatgttt tggtttgatt      6900
     tctgtgtaaa acttatgcaa tgtgtttatt gtaattttca aaaaattttc tctaagtttg      6960
     ctgttatgca ttacaatagt agtagtatgt tttgtattag ttgataagag tagtatctat      7020
     gagtttaatg tttgcatgga agttgtgttt atcttttgct tttgatgtta tttgttttgc      7080
     ttttgcatat gtttgaaatt tgtacttgtt cattatttaa tccctttttt tcctttcctt      7140
     gatgaaatcc ctagaataga ataattagat aagttaagat agttgagtgt aggtggtttg      7200
     ttattttggg tagatatttt agtttaggta atctgtaagt aa                         7242
//
ID   MARINERNA4_MD repbase; DNA   ; MAM   ; 353 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   MARINERNA4_MD; a probable non-autonomous Mariner element from
DE   opossum Monodelphis domestica.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; non-autonomous.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-353
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-353
RA   Gentles A., Jurka J.;
RT   "MARINERNA4_MD, a family of nonautonomous Mariner elements from
RT   M. domestica.";
RL   Repbase Reports 5(10), 323-323 (2005).
XX
CC   [2] (Consensus)
XX
CC   This sequence is probably a non-autonomous Mariner, based on 21
CC   bp terminal inverted repeats, and TA TSDs. Average similarilty to
CC   the consensus is ~84%. The consensus was reconstructed from the
CC   June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 353 BP; 98 A; 57 C; 82 G; 113 T; 3 other;
     cagttgtccc tcgctatatc acggttcact tattgcggct tcactgtatc atgggtttta        60
     taaatatata tctaattctg tatcatggag ttacacttat catggcacac tattggctga       120
     tggaatgaaa ggcgaccaac cacagcgctg tgttctgtat cctgggcact gattggctca       180
     gtgactgtag gttaataaga gtgtggaaaa ggtttatagg agagtgggaa gggtttataa       240
     agccttaata tatatataaa taataaaata aatataatgc tgctactttg tggattttca       300
     cctatcgygg gggtctctgg aatrtaactc ctrtgatagg tgagggatca ctg              353
//
ID   CarLTR1A1B_LTR repbase; DNA   ; MAM   ; 416 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-416
RA   Smit A.F.;
RT   "CarLTR1A1B_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 or 5 bp dups; 12-13% subst;.
XX
SQ   Sequence 416 BP; 126 A; 113 C; 64 G; 113 T; 0 other;
     tgatgtggag aacaaaggca aaaggaaatg tagataaaat taaatttcct tacaacttgc        60
     agcccattga caaatacttg agacaggcag agtatgacat tcctccagga actcccaact       120
     gtcttaatgt taatgctttg ctagaggcaa aaagcaacct tagcttgaca atagccagac       180
     ctccaggatc ctgtaagtct tctttaacat atgaaaatcc ttttggaaac ttcctttgtc       240
     tctacccccc ccaacttaaa agtatataac caatcgctcc tcacaatccc agtgcagctc       300
     tttctgccca tgggtcctgt ccccgtgctt taataaaacc accttttttg caccgaaaac       360
     gtctcaagaa ttctttcttg accgttcgct cccggacccc acatcaaatc acatca           416
//
ID   KORV_LTR    repbase; DNA   ; MAM   ; 502 BP.
XX
AC   AF151794;
XX
DT   30-OCT-2001 (Rel. 6.09, Created)
DT   30-OCT-2001 (Rel. 6.09, Last updated, Version 1)
XX
DE   Phascolarctos cinereus retrovirus KoRV long terminal repeat.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; KORV_I;
KW   KORV_LTR.
XX
OS   Phascolarctos cinereus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Diprotodontia; Phascolarctidae;
OC   Phascolarctos.
XX
RN   [1]
RA   Hanger J.J., Bromham D.L., McKee J.J., O'Brien M.T.,
RA   Robinson F.W.;
RT   "The nucleotide sequence of koala (Phascolarctos cinereus)
RT   retrovirus: a novel type C endogenous virus related to gibbon ape
RT   leukemia virus.";
RL   J. Virol 74(9), 4264-4272 (2000).
XX
DR   GenBank; AF151794; Positions       3     504.
XX
SQ   Sequence 502 BP; 133 A; 124 C; 126 G; 119 T; 0 other;
     tgaaggaggc agaaatcatg aggcagaaat cattccgtgg agtatggaaa ctacccggag        60
     ggcccaaggt ttagggacag gtgcagccag gcacagtaaa aggtcagagc aagaaaaaca       120
     aggaagattt ggagtgccaa acgggatatc tgtggtcatg cacctgagtc cccaccccgg       180
     acttatgcaa acaattccca gaaatagctg agctcataac agtttctagg gtgcccctca       240
     gcagtttcta gaaccctctc gtgaccggag tttttattca aactaaccaa tgatcttgct       300
     cctcgcttcc gtacccgcgc ttttttgcta taaaatgaga ccaaagaatc cacctggcgc       360
     gccagtccct ctaggtgact gagtcgcccg agtactcgta agttcaataa acctcttgct       420
     atttgcatcc ggagttgtgt tcgcgttgat cctgggaggg tttctcaagg tcggaggact       480
     acccgaacat tggggtcttt ca                                                502
//
ID   GOLEM_B     repbase; DNA   ; MAM   ; 1205 BP.
XX
AC   .
XX
DT   25-FEB-1998 (Rel. 3.01, Created)
DT   01-OCT-2005 (Rel. 5.09, Last updated, Version 5)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Non-autonomous; 35S;
KW   GOLEM; GOLEM_B; MER17; MER29; MER7; MER7B;
KW   nonautonomous DNA transposon.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-944
RA   Drinkwater D.R., Burgoyne A.L., Skinner D.J.;
RT   "Two human repetitive DNA elements: A new interspersed repeat
RT   found in the factor IX gene, and a satellite 11 tandem repeat
RT   sequence..";
RL   Nucleic Acids Res 14, 9541-9541 (1986).
XX
RN   [2]
RP   1-944
RA   Kaplan J.D., Duncan H.C.;
RT   "Novel short interspersed repeat in human DNA..";
RL   Nucleic Acids Res 18, 192-192 (1990).
XX
RN   [3]
RP   932-825
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [4]
RP   546-326
RA   Skalnik G.D., Strauss C.E., Orkin H.S.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter..";
RL   J. Biol. Chem 266, 16736-16744 (1991).
XX
RN   [5]
RP   1004-824
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat..";
RL   Genomics 18, 322-328 (1993).
XX
RN   [6]
RP   79-546
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [7]
RP   1-1
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [8]
RP   1-1205
RA   Kapitonov V.V., Jurka J.;
RT   "GOLEM_B..";
RL   Direct Submission to Repbase Update (1998)..
XX
CC   [8] (Consensus)
XX
CC   Replaces MER17, MER29, MER7B.
CC   Differs from GOLEM and GOLEM_A by internal deletions.
CC   23 bp terminal inverted repeats, TA target site [7].
CC   Orientation has been changed based on the reconstruction
CC   of GOLEM internal sequence [8].
XX
SQ   Sequence 1205 BP; 386 A; 208 C; 217 G; 367 T; 27 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagnctc aggcaggtcc       360
     ttcaggagat attccagaag aargcatcgt tatcatagga gatgacagct ccatgcatgt       420
     tattgcccct gaagaccttc cagtgggaca aaatgtggag gcggaagaca gtgatattra       480
     tgatcctgac cctgtgtagg cctaggctaa tgtgtgtgtt tgtgtcttag tttttaacaa       540
     aaatntttta aaaaataaaa aaatwaaaaa tttwwaaata gaaaaaagct tatagaataa       600
     ggatataaag aaagaaaata tttttgtaca gctgtacaat gtgtttgtgt tttaagctaa       660
     gtgttattac aaaagagtca aaagttaaaa atgcaaaagt ttataaagta aaaaagttac       720
     agtaagctat ggttaattta ttgctgaaaa arwwwwwwww wwwwwataaa wttagtatag       780
     cctaagtgta cagtgtttat aaagtctaca gtagtgtaca gtaatgtcct aggccttcac       840
     attcactcac cactcactca ctgactcacc cagagcaact tccagtcctg caagctccat       900
     tcatggtaag tgcyctatac aggtgtacca ttttttatct tttataccgt atttttactg       960
     taccttttct atgtttagat acacaaatac ttaccattgt gttacaattg cctacagtat      1020
     tcagtacagt aacatgctgt acaggtttgt agcctaggag caataggcta taccayatag      1080
     cctaggtgtg tagtaggcta taccatctag gtttgtgtaa gtacactcta tgatgttcgc      1140
     acaacgaaat tgcctaatga cgcatttctc agaacgtatc cccgtcgtta agcgacgcat      1200
     gactg                                                                  1205
//
ID   SINEC1B2_CF repbase; DNA   ; MAM   ; 164 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Dog SINE element SINEC1B2_CF.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   SINEC1B2_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-164
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1B2_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 89%.
XX
SQ   Sequence 164 BP; 21 A; 54 C; 45 G; 44 T; 0 other;
     gggcagcctg ggtggctcag cggtttagcg cctgcctttg gcccagggcg tgatcctgga        60
     gacccgggat cgagtcccac atcgggctcc ctgcatggag cctgcttctc cctctgcctg       120
     tgtctctgcc tctctctctc tctgtgtctc tcatgaataa ataa                        164
//
ID   MLT1F       repbase; DNA   ; MAM   ; 542 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1F subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT1F;
KW   MaLR family; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
RN   [2]
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1F retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 22%.
XX
SQ   Sequence 542 BP; 134 A; 153 C; 130 G; 124 T; 1 other;
     tgtggtagcc agcctccaag atggccccca atgatccctg cctcctggta ttcacgccct        60
     tgtgtagtcc cctcccacat tgaatagggc tgacctgtgt gaccaataga atatngcgga       120
     aatgatggtg tgtgacttcc gaggctaggt cataaaagac attgcggctt ctgccttgct       180
     ctctttggat cactcgctct gggggaagcc agctgccatg ttatgaggac actcaagcag       240
     ccctgtggag aggtccacgt ggcgaggaac tgaggcctcc tgccaacagc cagcaccaac       300
     ttgccagcca tgtgagtgag ccatcttgga agcggatcct ccagccccag tcaagccttc       360
     agatgactgc agccccggcc gacatcttga ctgcaacctc atgagagacc ctgagccaga       420
     accacccagc taagccgctc ccaaattcct gacccacaga aactgtgaga taataaatgt       480
     ttattgtttt aagccactaa gttttggggt aatttgttac gcagcaatag ataactaata       540
     ca                                                                      542
//
ID   DNANA2_MD   repbase; DNA   ; MAM   ; 232 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   DNANA2_MD, a family of non-autonomous DNA transposon from
DE   Monodelphis domestica - consensus.
XX
KW   DNA transposon; Interspersed Repeat; non-autonomous; DNANA2_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-232
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-232
RA   Gentles A., Jurka J.;
RT   "DNANA2_MD, a non-autonomous DNA transposon from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 343-343 (2005).
XX
CC   [2] (Consensus)
XX
CC   DNANA2_MD is a putative non-autonomous DNA transposon. It
CC   is most similar to the mammalian elements MER63C, MER63D. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS
CC   sequence.
XX
SQ   Sequence 232 BP; 78 A; 47 C; 32 G; 74 T; 1 other;
     tgctggtaaa tgtttaacaa ctrgctctct agaaaaaaat gtatgcatga cacactttta        60
     agtttaatct gcattattaa cattttctcc atcactttct taagtctaga caatcaacaa       120
     aacaataaat caagccctga tttgtagcat ttgccaattt ctgaggtata aatgctcaca       180
     ctgaaaattt aacaatcagc tcttagagct agtttgagct ggctccagca ca               232
//
ID   SINE-1_MD   repbase; DNA   ; MAM   ; 259 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   SINE-1_MD, a tRNA-derived SINE element from Monodelphis
DE   domestica.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-259
RA   Monodelphis domestica sequencing consortium ;
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-259
RA   Gentles A., Jurka J.;
RT   "SINE-1_MD, a potentially RTE-mobilized SINE from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(10), 334-334 (2005).
XX
CC   [2] (Consensus)
XX
CC   This SINE shares similarity over the first ~130 bp with MAR1_MD,
CC   but is clearly a distinct family. It lacks the poly-A tails and
CC   16-17 bp TSDs of MAR1_MD. Based on shared age distributions,
CC   similar distribution of target site duplication lengths, and
CC   sequence similarity, SINE-1_MD may have been mobilized by an
CC   RTE-like non-LTR retrotransposon. The most likely candidate for
CC   the autonomous element is RTE-3_MD. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 259 BP; 80 A; 62 C; 62 G; 55 T; 0 other;
     gggcagctag gtggcacagt ggatagagtg ctgggcctgg agtcaggaag actcatcttc        60
     ctgagttcaa atctggcctc agacacttac tagctgtgtg accctgggca agtcacttaa       120
     ccctgtttgc ctcagtttcc tcatctgtaa aatgagctgg agaaggaaat ggcaaaccac       180
     tccagtatct ttgccaagaa aaccccaaat ggggtcacaa agagtcagac acaactgaaa       240
     aatgactgaa caacaacaa                                                    259
//
ID   ERV9_MD_LTR repbase; DNA   ; MAM   ; 793 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV9_MD, a class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV9_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-793
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-793
RA   Gentles A., Jurka J.;
RT   "ERV9_MD, a class 1 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 392-392 (2005).
XX
CC   [2] (Consensus)
XX
CC   The corresponding internal sequence is deposited as ERV9_MD_I.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
SQ   Sequence 793 BP; 227 A; 166 C; 184 G; 210 T; 6 other;
     tgtggaagag gcatgaagga agagagaatt tcatgcatgc aagacaaaag taagggacct        60
     catctgtcaa tcaaggtgaa cattccaaat agaatgttcc caggaaaggc agttggagcc       120
     tggccagagg atgaactgtt ctcgggggaa gaagctctga aactgacccc tgttagcttc       180
     tgtcctaggc tgaaggaccc ttggggggct tctggagtta ggctgagaag aaattaactt       240
     ttgttggtgg ctttgagtgg ttggaagaag aaagaagatt aaacagttgt cctccatctc       300
     cctgacagat ttttgtgtca cagttgtgac aggactgaca tttcccaaaa tcctcctaac       360
     cctccttata gattagggaa aacctcatcc ctctcacctc atcttccatc cttgtcctgt       420
     tgttcccaat aaacctcctt acttgagaaa graagataaa gaatattttt cykaaatctc       480
     atagttcccy ttgagttact tagaaggtgg ctgactaaac agggggaggg gaaagggagg       540
     caggagggcg tgggtggaaa ctgggaggtg aagggaggag ggtaggaaat atcttgatct       600
     attagccatc agtagtgatc aataggcaac cccagagtat cccctctagt agyatctctc       660
     tatctctcag aagtatctct atctccatta caactaggca ccctcaggtt tcccctagta       720
     tctctctagt caagccagag tatcccattt attacaacya gaaatatctc cacagattat       780
     cttttttaat aca                                                          793
//
ID   Oamar1      repbase; DNA   ; MAM   ; 1220 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Mariner DNA transposon from Ruminantia.
XX
KW   Mariner; DNA transposon; Interspersed Repeat.
XX
OS   Ruminantia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla.
XX
RN   [1]
RP   1-1220
RA   Smit A.F.;
RT   "Oamar1 - Mariner DNA transposon from Ruminantia.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1220 BP; 423 A; 195 C; 229 G; 373 T; 0 other;
     ctgggtcggc taaaaggttc attaggtttt ttttctgtaa gatggctcta gtagtacttg        60
     tctttatctt cattcgaaac aattttgtta gattgtatgt gacagctctt gtatcagcat       120
     gcatttgaaa aaaacatcaa aattggtaaa tttttgtata gccatcttac tattgaagat       180
     ggaagaaaag aagcaaaatt ttcagcatat catgctgtat tatttcaaga aagataacca       240
     aaatgcaaaa atgtatttgt gaagtgtatg gagaaggggc tgcaactgat caagcttgtc       300
     aaagtagttt gtgaagtttc gtgctggaga tttcttattg gacgatgctc cacagttgga       360
     tataccagtt gaagttgata gtgatcaaat tgagatattg agaataatcg atgttatacc       420
     acgcgggaga tagctgacat actcaaaata tccaaataga accttgaaaa ccatttgcac       480
     catctcagtt atgttaatca ctttgatgtt tgagttccac ataagcaaaa aaacaacaac       540
     aacaaaaaaa aacacaacct tgaccatatt tgcgcatgca gttctctact gaaatgattg       600
     aaaacacttt gtttttaaaa acagattttg attaacagtg ggtacgatac aataacgtag       660
     aatggaagaa attgtagggt gagcaaaatg aaccaccacc accaaaggcc agtcttcctc       720
     taaagaagat gtgtgtatgg tgggattgga aagtaatcct ctattatgaa ttcttctgga       780
     aaacactgct cctaattaga ccaactgaaa gcagcactca acgaaaagca tccagaatta       840
     gtcaatagaa aacataatct tccatcagga taacgcaaga ctacatattt ctttgatgac       900
     ccagcatggc tggagtttct gattcatctg ttgtattcag acgttgcatc tttggatttt       960
     ttccatttat ttcagtctac aaaattatca taatggaaaa aatttccatt ccctggaaga      1020
     ttgtaaagtg catctggaaa atttctttgc tcaaaaagat aaaaagtttt gtgaacacag      1080
     aattatgacg ttgcctgaaa aatggcagaa ggtagtggaa caaaagagtg actatgttgt      1140
     ttggtaaagt tcttagtgaa aatgaaaaat gtgtctttta tttttattta aacaccaaag      1200
     gcacattttg gccaacccaa                                                  1220
//
ID   L1-5_MD     repbase; DNA   ; MAM   ; 1441 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   L1-5_MD, an old subfamily of LINE1 element from Monodelphis
DE   domestica - consensus sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1-5_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-1441
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-1441
RA   Gentles A., Jurka J.;
RT   "L1-5_MD, an old subfamily of L1 element from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(10), 314-314 (2005).
XX
CC   [2] (Consensus)
XX
CC   A partial consensus of an L1 element in opossum, that has only
CC   ~5400 copies in the version 2 genome assembly. The copies are
CC   around 22% diverged from the consensus. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 1441 BP; 675 A; 187 C; 288 G; 287 T; 4 other;
     gatatagtca tgtgctgata atcagatagc taccatgcat ttgcatttct gggatgagca        60
     ggaaaaggaa taactataag gagtggcaga aacctagagg ggagagccta gaatggatac       120
     cttggaagtt ttgattgcat gaagaataca gagaaaarag agagaccaga taattatagg       180
     gtcatgaatc agagaatgag ggtctagagt agaagaaaga gaaatggata atgaagagag       240
     tgagagaaat cctttttgga aagggataca aaaatgaaat ttaaaaacta atgaacaaga       300
     ctagttgaag gggagaagag gaaaggggaa tctacttgac taagagggaa aaaagggggg       360
     aagaattata taaccagata aaagcaggag agaaaaagga actaataagc aaaaccccaa       420
     agggaaaggg gtaacaaatg agaagaggag atcaggggtg aggggaagag agccagtggg       480
     aayagggcca ccttaaaaaa agattaaggt aaagtaactg aaggaacata gtactatgtt       540
     tatagcagaa gagggaaaat cataacttaa aaaaaaaata ttagagacag atggaggaaa       600
     atataaacct aactctcata actttaaatg tgaatggatt aaacaatcca ataaaacaaa       660
     aaagaatgac agattggata agaaaacaaa accctacaat ctgttgctta caagaaacac       720
     atttaaaaaa caaagacata cacaaaataa aactgaggag atggaaaaaa atttactatg       780
     catcaagtga atccaaaaaa gcaggagttg caatcatgct atctgacaaa gcaaaaacaa       840
     cattcaaaaa ataaaaaggg ataaacaagg aaactatatt atgctgaaag gaaccataga       900
     caacaaacca atatcagtaa taaacttata tgctccaaat gccttagcat ccaaattcat       960
     aaaggaaaca ttatctgagc tacaagaaga caagatagta acacaatagt gacaggagac      1020
     ttcaatatcc ctctctcagt tttggataag tctaacagaa agataaacaa aagggaaaat      1080
     atggaactga acaaattgct ggagaaacta gagttaaaag acttatggya tcttctaaat      1140
     gggacagcaa aagaatatac atatttctca gcaccacatg gaacttttac aaaaatgacc      1200
     atgtactagg gcacagagat attgcaaaca aataaaaaag gcagaaatag ttaatacatc      1260
     ctttatagac cataaacaat aaaaatagaa ttggttcarg gaccacaaac aaaagataag      1320
     acccaaatgg agacttaaca ataaaattaa ataatgatgg atcaaagaac aaatcataga      1380
     aaatataaaa aatatgaaaa aacaaaattt cgtataaaca ctaggaaaat atataaaaaa      1440
     a                                                                      1441
//
ID   L1MC2       repbase; DNA   ; MAM   ; 1091 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MC2) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1M4; L1MC2; L1MC2 subfamily;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1091
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-1091
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   16%.
XX
SQ   Sequence 1091 BP; 414 A; 186 C; 215 G; 271 T; 5 other;
     ctgktatcca aaatatacaa agaactctta aaactcaaca ataagaaaac aaacaaccca        60
     attttaaaat gggcaaaaga tctgaacaga cacctcacca aagaagatat acagatggca       120
     aataagcata tgaaaagatg ctcaacatca tatgtcatta gggaattgca aattaaaaca       180
     acaatgagat atcactacac acctattaga atggctaaaa tccaaaacac cgacaacacc       240
     aaatgctggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggcacagc cactttggaa gacagtttgg cagtttctta caaagctaaa catantctta       360
     ccatacgatc cagcaatcgt gctccttggt atttacccaa atgagttgaa aacttatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aagcaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaagaaat gagctatcaa gccatgaaaa gacatggagg       600
     aaacttaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtatg       660
     attccaacta tatgacattc tggaaaaggc aaaactatgg agacagtaaa aagatcagtg       720
     gttgccaggg gttcaggggg agggagggag ggatgaatag gtggagcaca ggggattttt       780
     agggcagtga aactattctg tatgatactg taatggtgga tacatgwcat tatacatttg       840
     tcaaaaccca tagaatgtac aacacaaaga gtgaacccta atgtaaacta tggactttag       900
     ttaataataa tgtatcaata ttggttcatc aattgtaaca aatgtaccac actaatgcaa       960
     gatgttaata ataggggaaa ctgtgtgngg gnggggtgag ggggtatatg ggaactctct      1020
     gtactttctg ctcaattttt ctgtaaacct aaaactgctc taaaaaataa agtctattaa      1080
     ttttttaaaa a                                                           1091
//
ID   MER53       repbase; DNA   ; MAM   ; 189 BP.
XX
AC   .
XX
DT   27-JAN-1997 (Rel. 2, Created)
DT   15-OCT-1997 (Rel. 2.09, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat; putative non-autonomous DNA
DE   transposon related to Mariner terminal inverted repeats - a
DE   consensus.
XX
KW   DNA transposon; Interspersed Repeat; MER53; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-189
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit A.F.;
RT   "Identification of new medium reiteration frequency repeats in
RT   the genomes of primates, rodentia and lagomorpha..";
RL   Genetica 98, 235-247 (1996).
XX
CC   [1] (Consensus)
XX
CC   TA target site duplication; MER53 is an almost perfect
CC   palindrome.
CC   Identified in humans and rodents.
XX
SQ   Sequence 189 BP; 68 A; 29 C; 27 G; 65 T; 0 other;
     gggttgccag atttagcaaa taaaatacag gatgcccagt taaatttgaa tttcagataa        60
     acaacaaata attttttagt ataagtatgt cccatgcaat atttgggaca tacttataac       120
     taaaaaatta ttcattgttt atctgaaatt caaatttaac tgggcatcct gtattttatc       180
     tggcaaccc                                                               189
//
ID   MLT1A       repbase; DNA   ; MAM   ; 374 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   25-OCT-2000 (Rel. 5.09, Last updated, Version 5)
XX
DE   Mammalian long terminal repeat (MLT1A subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT1A;
KW   MaLR family; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
CC   [1] (Consensus)
XX
CC   LTR of MLT1A retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 17%. Intermittant subfamily
CC   between MSTD and MLT1C.
CC   The subfamily MLT1A differs from this consensus by two small
CC   inserts
CC   and a few substitutions.
XX
SQ   Sequence 374 BP; 96 A; 87 C; 97 G; 93 T; 1 other;
     tgctatggac tgaatgtttg tgtcccccca aaattcatat gttgaagccc taatccccaa        60
     tgtgatggta ttaggaggtg gggcctttgg gaggtgatta ggattagatg aggtcatgag       120
     ggcggggccc tcataatggg attagtgccc ttataaaaga gaccycagag agctcccttg       180
     ccccttccgc catgtgagga cacagtgaga aggcgccgtc tacgaaccag ggaatgagcc       240
     ctcaccagaa actgaatctg ccggcgcctt gatcttggac ttcccagcct ccagaactgt       300
     gagaaataaa tttctgttgt ttaagctacc cagtctatgg tattttgtta tagcagcccg       360
     aacagactaa gaca                                                         374
//
ID   L1_Fc_5end  repbase; DNA   ; MAM   ; 2027 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   L1 Non-LTR Retrotransposon from cat.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Felis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Felidae.
XX
RN   [1]
RP   1-2027
RA   Smit A.F.;
RT   "L1_Fc_5end - L1 Non-LTR Retrotransposon from cat.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4% div.
XX
SQ   Sequence 2027 BP; 669 A; 476 C; 533 G; 331 T; 18 other;
     gggaagatgg tggcgtagga ggatgctggg ctcaccncgt cctgctgatg acttagattc        60
     cacccacacc tgcctaaata acccagaaaa ccgccagaag actagcagaa cggantctcc       120
     ggagccaagc gtagacgaga ggcccacgga agagggtagg aagggcggng aggcggtgtg       180
     cgctacacgg actggcggga gggagccggg gcggtggagg ggcagcccgc acggcaaggc       240
     agagcccccg agtctggctt gcaaaagcgg aggggccgga cngcgtgngt tctgacagcn       300
     agcgggactt aacatctggg angttanaag tcaacagctc tgctcggaga gcgggagggc       360
     nggaggacaa cgggagggag agttgctgag ccccgganga cagagctcag cttggcgggg       420
     aacaaaggcg ctggccagca ccatctccct cncccatccc ccagccaaaa tcccaaaggg       480
     aaccagttcc tgccagngaa cttgcttgca ccgcacaaac acccaacgct gtgcttctgt       540
     gganccatcc ctccgacagc gggtctgact ccctctgggt gctgcagggc ccctcctgaa       600
     gcggatcacc gaaggaaaag cgagctaagc ctgcccctcc cgcccctgtg caccttgccg       660
     atccacccca gctaatacgc cagatcccat cmaagcagca tcacaagcct ggcagtgtgc       720
     aagtagccca gacaggggcc acgccacccc acagtgaatc ccgcccctag gagaggggaa       780
     gagaaggtac acacaccagt ctgactgtgg ccccagcggt gggctggggg cagacatcag       840
     gtctgactgc ggccccgccc accaacgcaa gttattcaag acagcacagg ggaagtgccc       900
     tgcagttccg cgccactcca gggactatcc aaaatgacga aacggaagaa ttcccctcaa       960
     aagaatctcc aggaaatagc gacagctaac gaactgatca aaaacgattt aaacaatata      1020
     acagaaagtg aatttagaat aatagtcata aaattaatcg ctgggcttga aaacagtata      1080
     naggacagca gagaatctat tgctacagag atcaagggac taaggaacag tcaggaggag      1140
     ctaaaaaatg ctataaacga gntgcaaaat aaaatggaga cgaccacggc tcggattgaa      1200
     gaggcagagg agagaatagg tgaactagaa gataaaatta tggaaaaaga ggaagctgag      1260
     aaaaagagag ataaaaaaat ccaggagtat gaggggaaaa ttagagaact aagtgatgca      1320
     ctaaaaagaa ataatatacg cataattggt attccagagg aggaagagag agggaaaggt      1380
     gctgaaggtg tacttgaaga aatcatagct gagaacttcc ctgatctggg gaaggaaaaa      1440
     ggcattgaaa tccaagaggc acagagaact cccttcagac gtaacttgaa tcgatcttct      1500
     gcacgacata tcatagtgaa actggcaaaa tacaaggata aagagaaaat tctgaaagca      1560
     gctagggata aacgtgctct aacatataaa gggagaccga taagactcgt gacngatctc      1620
     tctactgaaa cttggcaggc cagaaaggaa tggcaggaga tcttcaatgt gatgaacaga      1680
     aaaaatatgc agccgagant cctttatcca gcaggtctgt cattcagaat agaaggagag      1740
     ataaaggtct tcccaaacaa acaaaaactg aaggaattca tcaccactaa accagcccta      1800
     caagagatcc taagggggat cctgtgagac aaagtaccag agacatcgct acaagcatga      1860
     aacctacaga catcacaatg actctaaacc catatctttc tataataaca ctgaacgtaa      1920
     atggactaaa tgcgccaacc aaaagacata gggtatcaga atggataaaa aaaacaagac      1980
     ccatctattt gctgtctaca agagactcat tttagacctg aggacac                    2027
//
ID   MER4I       repbase; DNA   ; MAM   ; 6387 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 2)
XX
DE   Medium reiteration sequence MER4I, putative retroelement MER4I -
DE   a consensus. It is flanked by MER4 LTRs and is similar to the
DE   MER41I, MER57I and MER65I retroelements.
XX
KW   LTR Retrotransposon; Interspersed Repeat; MER4I;
KW   Repetitive sequence; retroelement.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-6387
RA   Kapitonov V.V., Jurka J.;
RT   "MER4I..";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   LTR8 fragment inserted at position 2496 is marked by *.
XX
SQ   Sequence 6387 BP; 2006 A; 1007 C; 1040 G; 2211 T; 123 other;
     tggtaaccat ggaagggatt ctgagtggag atgcccctga cctttgacaa atctcctatc        60
     ggtgcttggt accagcatga gctaacttta tggcycaagc tcaarwtrtc tttatkgctc       120
     aaaccaatag gacaatttgc tgaggtctgr gagcatctcc ctccagagaa tccctgatct       180
     cccaaaattt ggtcgagatc taargtttat tttgctgtac aactcctctt tttttggagt       240
     tttacttgct tccaacacaa ggaaggcgag tttttcctgc ttccatgatg atggaaggca       300
     ggtaactcct ttmtggagtt tsagctcgct tccaacaggg aagrtgagtt ttttttcctg       360
     cttctaggat ggtagagagc agtcttcagc ctgagaccca ttcctaggta agtaactgaa       420
     ttggggtttg tcttggaaat tctccttctt ggctaaaagt taagattaac aatcttggaa       480
     attctcctta argactaaaa gttaagatta acaaccagct ggtcttaatt tctccttacc       540
     attagagcgc tcagtaatca tataagttgt gcgatcattt gttttgctta actgcttytg       600
     tttttgttgt ttttgtttgt ttctgttttt gttgttgttt cwgtcttttt cctattgggt       660
     ttgaccaact ctatccgact tgatcagtgt ggtgggggga gaaaaacggc cagcaaaagg       720
     aaaaaattga ncttgtttac tttgactact aaatctgaag gagaattcca aattatgggg       780
     aacaaggcct ctgaagtggc taaattccca caaaaaaaaa aaaaaamaaa aaaaaaacaa       840
     ggcyagcttt ttgctagcca ggccaaactg aaagagcaat ggctgtcacc ycacgctgca       900
     gttcwatagc taaggtyctg cntttttttt ttttttcacc gtgacagcct gggtttggtt       960
     cytaaatcaa gccctttctg gtttgatast tggtacttct gaaatagcag cwgtttgtcc      1020
     tagctaaaat atggtaatga gatttkaaag gattttttta aaggagctca atggttaaaa      1080
     gtcagcttaa ttaaaaggct aacatccaag atgtatgtgt gtatgtgtgc gtgtgtatgt      1140
     gtgcatgtgt gcgtgtttgt atttaaaagg ccttcatgtt tttgtttcgt cgtttgtttt      1200
     tctctcctaa gaccttgtct ttttttgagc aaagtttttt tcttctcagt tgactgaatt      1260
     ctgttttctt catttacttt tcttccaccc tgttcctcct tccctttgcc atcttykgya      1320
     ccaagtgaar rgayctagar aaggcttcta atracttgag accccttaaa gaacwcagaa      1380
     aaaggtgcca cwcacccctt tttgaggrta aacttctgtt tttccttatg ggacctcaaa      1440
     agtagtaaah agacagattc ctctcaggtc taaagctctg ctytcttttg yattgcgtta      1500
     cctgattttt tgactaaaat agttattgca acagaggcta ctcttgggtt tttaaggaag      1560
     agtgtagtgt agacacttag aaatgtcttt gtttaaaaak ttaagtrcac tgtaaaagca      1620
     tcatrtggyt tagyctcatr ataattctcc ctttttrgag acccagcatt cagtgtgggc      1680
     tctgcccaga gctcagtgrt ccagttaaaa ataggtagtc tctatytaaa taaaattggt      1740
     ctccttataa aatcctatga tagatttcta taattttatg tttratttgg catcaatytt      1800
     taatcttcct ctagcaccac cagacttttt ctctctgtac tttaagatgt aaattttgct      1860
     atytgatttt tcacctaaga gttgtttcct ttaatatgca aatttagggc tatttagctg      1920
     acaactgcct agggtaatga aacaggttat caagaatttg aaagtctaag ataggaaaaa      1980
     aaggrggtct tataaatcta taagatgtac ttctatcagc atgcctaata cgtctatgta      2040
     tttatgtgtt gtgtacacaa tgtttcacta ctaaaaatat ataaaagagc tctaattaat      2100
     tggcttaaag aaaaataaaa gtgcttaaat caaatacttt atcaggaaaa aagaaaagac      2160
     tagtcaaatg ctttttcaag ttyatgaaat gctttttcaa gtttatgtaa cttaagtaaa      2220
     atctttaata aataagctag ctttaaaatt attggtaaag taatattaga aatgtcttaa      2280
     gaattgccag catacatttt tgtttgcatt atattaatca agcartttca tacttatccc      2340
     tgccaaatac tataaaggtg tcaaaatttg gcataggggt tayaaaacta taaacccagc      2400
     ccaaaacaga atgatctttg cttgtgtaat ttttaataaa taagacattg atattggttt      2460
     aatgaaaaya gctrcatctt gaatttagta agattaccat aacttctaac cttgtggctt      2520
     taggcgrtyt ttaaatgatg actatcgcag ttttcataaa taatctaggt aaacaattaa      2580
     taaaataatt aggtaaatgt aatgggataa atacttgtag acaaacttgt cataatttag      2640
     aatataaagt tatattaaat taaataatag atawttwatt atttgrgtat tttccaataa      2700
     aaatatattg taggaaaaca ttcttkctta aaaaaaagtg tgtccttttt aaaaaaatgg      2760
     tgaataagtt ttgtctaatt caaagcttat ttaaaggtta trtataaaac aaggtaaaag      2820
     gaaccaggaa ataaaaaaaa tgtaaagaaa gttataaaaa taaagaggta ttttttgnar      2880
     gtaaaaaagc tgaaaragaa ataattttat atgagaaaga atcttatatg gtaaatttat      2940
     gagaaagaat cttgtatggt aaatttttgt cctaaaataa aatgactggt ttttaagaaa      3000
     gaggwtgttt aggacaaatc agaaagtcca agcatgttat waatggtctg tgtaagtcat      3060
     aataaggttt gcataaagag aaattaaaaa awtttatatg attaagttgg ctataattaa      3120
     aagraaatta tttataatag tctttctaga gattgakgtt tgatattaaa aatacactaa      3180
     tacactaaaa attkgttaga aaaacaaaat tttcttaaag tattgattta ytcataaaat      3240
     tacaagagat tttaatttta atccaaaaat tcaactttta ttgcatctca ctgttttcaa      3300
     gctttttctc ctctttgaga aggcctgaga taataactct ctccttcaac ttttttgtca      3360
     gctcctgtaa ttttttcctc hggttctaac tgytgttgtg gcctgatgct aaaaatgttt      3420
     tatyttaaag gtctaaaagm aatgttttct tccaatataa cattctgtac tckkcttttc      3480
     ttgatgtgtc tgaattgttc catgaaacca gaaaacttca ctcataaccc tggayacact      3540
     cttccttgtc taattaattc aagtactatt ttcatcagtt tgacttcagg ttatctaaag      3600
     ggcttcccat aaggagaagc aatcacactg cagaaggttt ttcttttsct ttttggtaac      3660
     tggcctaaga aaaagatttt atgttttatc aagataattt ttgtgttatt attattaagt      3720
     ttttgatttg cttaggaaaa ctgagattaa aattttttaa attaaggtta ttacatccat      3780
     gtatctttct gtattgcttt taaagtcctt gtgacattga gttacagggc tttaactcct      3840
     gggtctaaaa aggacaccaa gtcctgctaa atcttaaaca ctgacagcaa ttaaagccyc      3900
     atcttcaggc ccgtagaaga tgccaatcaa aataaactgc attcctgaga cacaggaaat      3960
     taaagctatt caactcctca aggcccaggg actatccaga agaggtgggc acgtgagatt      4020
     gtaagggcca attttgaaag ataaaataag ttcaragttt ctctataaat taatcattaa      4080
     aagtttctct ataaattaat cattrawatc aaaggcacac tgatgcaaga ccagcatatg      4140
     ggcccctgtg tcagattaac aaggttttct tgaagcatta acckactcct taataaaggt      4200
     tgtaaaggtt ataaaaggct tatgraaatt atatcttatg gtcaagatta aaattttata      4260
     gattgtttat aaaattttga aaaacaaatt taattggctt catgctgttt ttattagggc      4320
     ttattgtttg gaaaattaag tctcctctct caaagaatga aggtttttgc cttttttgaa      4380
     atccttgagt tatcactttg gttaaatgaa tgacttattt tacaatgacc tgtgattcta      4440
     ttttgtgata tcaagtgttt taaacctttg atatttgaca aactttccaa aatcaaatta      4500
     taaattatgt ctttctgacc taattaatcc tttaagatat taggttcctt aaagtccaaa      4560
     aatgacataa tttggcttat ttggtacaaa aattatayag gaagcattgt caaatatgaa      4620
     aaatgtttaa ncytctttgg gttrtatttg tataaatatg ttattggtat atgttccaaa      4680
     attatatgaa actcctataa ttctgatatr tcttagtgta tattatcart aataattata      4740
     attattatgt taaattattg tatgccacag argtaaccaa atttcctcgt caattgtgtc      4800
     tttaactatg gctgttctaa gacttttgtc atccacggac aattgtttta ttttgrtcct      4860
     ytttaaaagg tagtttataa tcagctatag ractctaaca agcgctctta aatrcaggtt      4920
     tctgataact ttggagattg tgacatcgga atagaggaaa aactttcagg actcatggar      4980
     arctaatgtg ttcatgagga ttgctaaccc aacatcgagc aagcagaaca ggaattaact      5040
     gcatggactg aaccaataga agabtgaaad aatctttttg actttttgct taaaacgttg      5100
     ctgatccttt gttttgtttt tcagagtcaa gaaaactttt cttttgagct atttacagct      5160
     tttaacaatt gagtatagta tactcctatg aacaaaattt ggagcatatt tgtttctctc      5220
     tacctgattt ctccagaatt tggaaactat ttgtgagtat tcttaactta tggcaataca      5280
     gttatttgca taagtgcaat aagaatctgt tttcatttgt aacaggacac aattggagaa      5340
     actggttatt ttaccaaggc tttgactgga atggtgtact ttcctttaag gaatcaaact      5400
     tgacttatgg agccaataaa agcccttgga aaaactggcc tcataccttg tbtacgcagt      5460
     ccctgtacaa ggtttctgac ctgtggtaag taaagaatgt cactttctga caggcccagg      5520
     agccccargt ttatcttgga acctcaagag gagaggaaat tcacccaatt cataggtatt      5580
     tgawggcgca aatccatggc tgggctcggc tttaaaaaag tcttatctga gattccttct      5640
     atggaaaaaa gttccakcaa agccaattta aaaagagcct atataamaaa tmattattct      5700
     tgctgcactt tatgcaaata atcaggccaa gtataataag astaaaactt attttrhaaa      5760
     caaattggtc ctaccatgat ttgtctttag taaaaatggg aaactggaga gagaaaaatt      5820
     atgtttcaaa aactatagta tacctgttat tagattctag ttgtttttca atttttatta      5880
     ttttctacag tttggactga attctaaatt ttttcctggc tacaagtctc caaaataatg      5940
     ttttcaatac tttttctttt tttccttccw tttttcccat ttttcctaat ttaaaatcac      6000
     traaaactaa agctgtgctt ktcttaaagc cctgcaaact gaarctagac aacttaaact      6060
     tcagaagaaa ataatagcaa cctatttaca tacataagcc actttcatac ctgcctactg      6120
     atgtatngac ttcagagtaa tgtgrcctrt rtcaattttc caggattgtt cttttgtttg      6180
     ttgttgtttt tctcccttcc tcctcctatt ttstcttcat aggacatgag acttcacaac      6240
     ctgctaaaaa tragctttcc taawawctcg ggacctaccc gtctaggaat aaactatcct      6300
     agccacgaga gatcagacga aacctgagac cagagactca ttttcttcta aaatgctttc      6360
     tccaaaagat tttagaaaag aagggaa                                          6387
//
ID   SATIICERV   repbase; DNA   ; MAM   ; 643 BP.
XX
AC   AF170123; AF170125;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Cervidae satellite II genomic sequence - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SATIICERV;
KW   Satellite II from Cervidae.
XX
OS   Rangifer tarandus caribou
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Cervidae;
OC   Odocoileinae; Rangifer; Rangifer tarandus.
XX
RN   [1]
RA   Li C.Y., Lee C., Hsu H.T., Li Y.S., Lin C.C.;
RT   "Direct visualization of the genomic distribution and
RT   organization of two cervid centromeric satellite DNA families.";
RL   Unpublished.
XX
RN   [2]
RA   Lee C., Li C.Y., Lin C.C.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (21-JUL-1999)Obstetrics &
RL   Gynecology, Pathology, Brigham & Women's Hospital, Harvard
RL   Medical School, 20 Shattuck Street, Thorn 623, Boston, MA 02115,
RL   USA.
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "SATIICERV consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 91%.
XX
SQ   Sequence 643 BP; 119 A; 191 C; 229 G; 97 T; 7 other;
     gagctgcctg acagactcgc tcagccgagc tctctgaagg tgcagggggc aggaacagac        60
     gtgtgcatgt agctctgcct tggcctggga gtgtggaccc ccbagctggt ccccaggctc       120
     agggccatgg gcctgagaga ggaccaccca aagcgctttt ctcccgggtt tgagagcaga       180
     gtgcgcggct tgcgggaaaa gccggccaga gtgcttgcaa ahcggccttt ggaggcaggc       240
     ggggaggtct tccagaggga gagggchggt gctgctvgga ggccccacag gccagaggca       300
     caaccvagca aggcccctgc ccttggccag ccttgcccag gccttcctgg cvtccagggg       360
     tactgcccca cgaaggggca ggctgcgggg agtgtgtcca gacatgcccg ggcacctach       420
     caaactcgcc ccccaagggc ctttccctgg gcctaggcct cagttgaggc ctactgggag       480
     ggaaggagct ggcaggggct gtctccacac tgcaacgtcc cagggggcag actggcagag       540
     ggaagagggg agcaacgggg tggatgccca agccctcttt ggcccagctg cctcagggca       600
     gcagggagag caagaggccc actgtgatcc taggtcggct ctg                         643
//
ID   L1-8_MD     repbase; DNA   ; MAM   ; 2784 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   L1-8_MD, a LINE1 element from Monodelphis domestica - consensus
DE   sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1-8_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-2784
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-2784
RA   Gentles A., Jurka J.;
RT   "L1-8_MD, a subfamily of L1 element from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(10), 317-317 (2005).
XX
CC   [2] (Consensus)
XX
CC   Copies are around 23% divergent from this partial consensus
CC   sequence. There are approximately 8700 copies in the current
CC   assembly. This consensus was reconstructed from the June 2005
CC   release of the 6.8X WGS sequence.
XX
SQ   Sequence 2784 BP; 1292 A; 392 C; 411 G; 658 T; 31 other;
     ggaaagggaa atttccctaa gtgggaggag aaaaaaagtg aagaaatata tagcccaagg        60
     caggagagag taacaaaact gtaaagggaa agtgatgggg ttggggaggt gaaaagtatg       120
     gatgggaaca gggccatctt taaagaaaat gataaagtaa ctgaaggaac atagtactgt       180
     gtttatagca gaagaaaggg ggggaatcat aacttgaaaa aaccaatttt agagacagat       240
     agaggaaaat ataaacctaa ctctcataay tttaaatgtg aatggattaa acaatccaat       300
     aaaayaaaaa agacagattg gataagaaaa caaaacccta caatctgttg cttacaagaa       360
     acacayttaa aaaacaaaga cataatataa aatagtgaat ggggggaaaa atttactatg       420
     catcagatag tgaatccaaa aaatcaaaaa atgcaatcat gctatcagac aaagcaaaaa       480
     cattgcaaaa ataaaaagat aaacaaggaa actacattat gctgaaagga accatagaca       540
     acaaaccaat atcagtaata aacttataya ctccaaatgc cttagtatcc aaattcataa       600
     aggaaacaac tgagctacaa gaagacatag acaataayac aatagtgaca gaagcttcag       660
     tatctcttct cagttttgga taagtctaac agaaagataa acaaaaagga aaatatggaa       720
     ctgaacaaat tgctggagaa actagagtta aaagatttat ggcatcttct aaatgggaca       780
     gcaaagaata tagctcatat atatgcacat gtatgtacaa acatatttga agtttatgta       840
     tgtagtacat acayacatac atataactgt agccatatgg aatttwtaac aaaaattgac       900
     catgtactag ggcacagaga tattgcaaac aaatgtaaaa aggcaagaaa tagttaatac       960
     atcttttata gaccataata caataaaaat aataattggt tcagggagaa ccacaaacaa      1020
     aagatataga cccaaatgga gacttaacaa tgaaatccta aataatgaat gggtcaaaga      1080
     acaaatcata aaaataatta ataattatgt aaaagaaaat gataatgatg aaacaacata      1140
     ccaaaatttc tgggatgcag ctaaagcagt cctcagggga aaatcatatc cttacaaaca      1200
     tacattaaca aaatagaaaa aaagggagaa gattaatgaa ctgaatatac attttaaaaa      1260
     attagaaagc caacaaataa acctaaaata agcacaaata gagagatatt aaaaattaga      1320
     ggggaaatag ataaattgga aacaaaaaaa tccatagaar taataaataa aactaaaagc      1380
     tggttyttta aaaaagacta ataaaattgt tgataaactc ttagctaatc tgattaaaaa      1440
     gaagagaaca gaaaattaaa tcaataaaat agcaaatgag caaggtgaaa tcacaacaaa      1500
     accagaagaa ataaaaarat aatcagaaca tattatgcac agttatatgc taacaaaact      1560
     gagaacacaa aagaacaaaa atgaaggaat gaaawacanc ttcaaaaata taaaatatcc      1620
     caaactatca gaagaccagc atagagatct taaataaccc aatctcagaa aagkaaatag      1680
     atctagctgt aaaggaacta ccaaagraaa aaactcctgg tcctgatgga ttcacaggag      1740
     aattctatca aaacttttaa agaayaatta gtacccatac ttcacaaatt attctcaaaa      1800
     attgagaaag aaaacaccct accagaatat tccttttatg agacaaatat agttctaata      1860
     cctaaaccag ggaaaaataa aacatagaaw gaaaactata grccaatatc attaatgaat      1920
     attgactcaa aaattttaaa taacttcata atcctttcaa aytaactaca gtaatttatc      1980
     yaaaaaatca ttcattatga tcaagtrgga tttataccag ggatgcaagg atggttcaac      2040
     attaggaaaa yaatcaacat aatcaatcat attaaaaact aaaacatcca aaaccacatg      2100
     atcatctcaa tagatgcaga aaaaaccttt gaaaaagtat aactcattta tgctaaaaag      2160
     yctacaaagt ataggcatag agggactttt aaaaaaatca taaaaaatat atctaaaacc      2220
     aaaagcaagt atcatatgca atgrggatac aytagaacct tttctaataa atacaggagt      2280
     gaagcaagga tgccccttct cccaactatt atttaatata gttcttgara tgttagtaat      2340
     agcaataaca tgagaaagga attaaaggaa taaagagtta aagaagaaat aaaactatcc      2400
     ctwttgctga tgatataatg atttayttgg aaaatycyag aaaatcagca aagatmctar      2460
     ttgagacaat agcttcagca aagttctttt tgaaaaatat atcctttaaa attaatagca      2520
     tttctatata ataacaaaac acaagaagca gagggaaatc ccactatgca taaaatatct      2580
     gggtatcaac ctcccaaagt acagaaaact tatattcaat tataaatcat tccataaaga      2640
     attaatgaac aatctaaatg gcttccgaat attcagtatt catggctagg ctaagccaat      2700
     ataattgaca gtactatcaa gattaattta catttttaat actataccaa tcaaattacc      2760
     aagatgacac tttataaagc ctga                                             2784
//
ID   CarERV4a_LTR repbase; DNA   ; MAM   ; 456 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-456
RA   Smit A.F.;
RT   "CarERV4a_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   16-17% subst.
XX
SQ   Sequence 456 BP; 117 A; 126 C; 87 G; 123 T; 3 other;
     tgtgaaaatt aataaaagga aacctcattt agaatggagt cgggaggccg gcagggggag        60
     ctctcacgcc ctaccactcn tcgtcaattg cagacccaac aggaagagan ggaccttgca       120
     ngtggatact actttactat cccagcagga ggaagaaagg ctttcctcct cccccggcaa       180
     cagcccagcc aatgagagac tgtcacaact cagccaatga gaagccacta tacttcgaac       240
     tcccagttta ctccaatgga ctttttgttt ataacagccc ctcccaactt cccctccccc       300
     tttcctctat aaaagagcat tcctctcctt tgttctccgg acttgcctat ggttttgccg       360
     tagcttgctt gtcccggatt gcaattctct gctattcccg aataaaccca ttttttgctg       420
     gtaaaataac tggcagtttt atttttaagg ttaaca                                 456
//
ID   CfERVF2_LTR repbase; DNA   ; MAM   ; 459 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from Canidae.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia.
XX
RN   [1]
RP   1-459
RA   Smit A.F.;
RT   "CfERVF2_LTR - ERV1 Endogenous Retrovirus from Canidae.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   CfERV4 (rep29int) encodes ERV1 like proteins (perhaps except in
CC   the ENV gene), though TSDs are more often 5 bp than 4bp;
CC   9-10% subst.
XX
SQ   Sequence 459 BP; 99 A; 175 C; 99 G; 86 T; 0 other;
     tgttgggccg gcgggatcaa gggggatcgg gaggcaccaa caaaatggcg gcggaccccc        60
     caccttgttg cccccacctc agaactttcc catcaccagc agaccgcccc gaggacacgt       120
     catcaggggg agactggacc tatgcaggaa acctgaaccg taccttaccc agaccccata       180
     taagggcatg ggcagttatt gccccaggcc gattccacca gtaatatgcc taatacctat       240
     caccccgtac agacacacaa ccccttaccc ctcccccctt aaaaagcccg cttgccctcc       300
     cctgcgcgcg acttccccgg cccgcgactt ccccgctctc tccctcccct gcgggccgcg       360
     gaacctcgcc cgagagcgcg tcccattaaa agcctgtttc gaccaacttt tgcctggcct       420
     ctctatttca tttcactacc gatcggatta aacctgaca                              459
//
ID   ERV1_MD_I   repbase; DNA   ; MAM   ; 8083 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV1_MD, a young endogenous retrovirus from Monodelphis domestica
DE   - consensus of internal sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERV1_MD_I;
KW   RNaseH; aspartyl protease; integrase; reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-8083
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-8083
RA   Gentles A., Jurka J.;
RT   "ERV1_MD, a young class 2 endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 363-363 (2005).
XX
CC   [2] (Consensus)
XX
CC   Appears to have been active relatively recently, given the large
CC   number of full-length, nearly identical copies in the genome that
CC   are >98% similar. Average similarity of copies used in
CC   reconstruction, to this consensus, is 98.9%. The corresponding
CC   LTR is deposited as ERV1_MD_LTR. The sequence has three long
CC   overlapping ORFs encoding putative integrase, reverse
CC   transcriptase, and retroviral aspartyl protease domains. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV1_MD_I_1p"
FT                 /translation="TKPKDDSLQVWKKEGELVSEMGLTISSHAGYIRLLMS
FT                 LVEQGGRKVSKAQIKALLQVIQKAFPAFPAKGTLEVAQWDLIGQSLKDYQK
FT                 EGNRVRKTVFNTWSIIRTILEDLATSTYTAGEKEFPQTQELKKQDFKGTAP
FT                 EETDGGREGECSEWSRDPPEAPGYSWKRSKTKESFATPKLYPSLDTLTPPP
FT                 PTPPPDYGLASRVSLVASPPPPCSPEVSKPYSPRNEPISPAQKGKEGISAF
FT                 PVRYIEDPEDANRRIAQHKPIDCKVLKMLRSSVVKNGAIAPFTLALLSNLA
FT                 QQTLTPADWYLAAESALSGGDYLTWKLKFHDLCSLQASENRQAGINVPFEQ
FT                 LVGQGEFEPIARQIAATEQIFNQIASAATKAWRALPGKDSESLYTEIIQKQ
FT                 NESFADFVDRLSTEVRRHIPHEDAAKVLIRDLAFLNANEQARRALAPIKAT
FT                 GTLTDFLRACQDIGMGETRTVLTVSEQQGMLTGHCHACGRKGHYRRACPNR
FT                 RPGKTPGICPKCRKGRHWASTCRASNKRSLPNTGSNTQLN"
FT   CDS           0..0
FT                 /product="ERV1_MD_I_3p"
FT                 /translation="RWVEAMLVFPQIMERSGLPVSISNRGRDRFQMQGEQR
FT                 NRLTSLAPHRLPETRTRSRRASLLSPVSYLMVKRRAPGSKATLVNARTLNT
FT                 DITFTLMTFTILTLLNICHAEVYWSIVPKPPILRMLTWMDKPPLVYVNNTD
FT                 WLPHPILAKRVPLESEGALYNYSGSTVYPPFCMSFRNSFIGNSFCVPRRHQ
FT                 AWIVKNATDNSYVGVGMGVIGMGDELARKTFQPKHPANKYLCPNQIGTVQK
FT                 ELPWTDCSVRVPRKVKMPATTDFNIYNWAPRLRCGRSEQLTRLDKYTDYEK
FT                 WHMPCQNFQKIEDLLEVDMAGSRLAIEAGPIQNTQWKIVAATQPIYKFKVK
FT                 VKNSGLDLEYDSHINVTACVFAPYVMLVGNNLRIFKNDQGLYEINCTKCRL
FT                 HQCLSPKHQDSYVAIMYHPPLMWVPVNLTETWASTPTVHIVQKAFNMVIHR
FT                 SKRMVLEIVGAVVSVIAMITSLTTATLALTSSIQNHEFIQEVVSNSSKLWH
FT                 TQQSIDLAYRDELDSLKDAVFWLGKEVEALHTRITYPCHYNQTGYCITPLP
FT                 YDNVSYEWQLVVQHIKGAWGSHNSTLDIIKLQQQINKLDQIVYENEAANIA
FT                 ANWEATLSSLDPQNWFGRANLTSIGTIILFILLAIGLIILCSRSCKNRAYI
FT                 RGILPELARSYHTRQLVPENVELNTTVL"
FT   CDS           0..0
FT                 /product="ERV1_MD_I_2p"
FT                 /translation="HPVKLDFGPALSPGANQGRTMRYSFRFPIIATESIVL
FT                 KENSEPTWIPASFRFPVPQGAKGLILGDPDLIAKGLEIFPTLFQDKETNGL
FT                 HILAAAKPAFCISKDNNLAYLTIFPEADFSLKSKLQKSSLDSTAHGLFWSQ
FT                 KVTQDRMVMSLFVEDRVISGILDSGADISVISATDWPESWEVIEPHQKLIG
FT                 IGTPEHILQSANTLSWSDSEGHRGIFKPYVLDIAQSLWGREVMSAMNITLT
FT                 TSDKLHTEFVGAASVAPLFADPITWLSSKPIWINQWPISKEKLVHLEAIIQ
FT                 EQLRLGHIRESNSPWNTPIFLVPKKAGKWRLVHDLRKINEQLMDMGTRQPG
FT                 LPSPGPIPINWKLIVIDLKDCFFNIRLSPQDCHRFAFSVPSINYGTPFKRF
FT                 EWLCLPQGMRVSSCLCQKYVAHALEKVRLEHAKYHIIQYVDDILLAAPSSG
FT                 EVEILLADATKALTAANLVISKEKIQTTPPYKYLGTLVYDQEIRPQKIEIR
FT                 RDSLNTLNDFQKLLGDINWLRPFLKISTGQLEHLYATLKGDAALSSPRTLS
FT                 PKAEEELKVVEEAVSKARVYRIDPSLPLIASVLQTRYTPTGALHQDQHIIE
FT                 WIHLANQQTKSLTSYLELIILLITQIRKRARQLTGIDPSTIHVPITREQVQ
FT                 NLFAQSLPWQIAFADYTGQIDNHIPANKILQFVKLTPIIFPRMTSMHPLVD
FT                 AVNVFTDASKHGRAGAVVQDSTMLLDTTYGSPQKAELAAVRSVLRDVVQAC
FT                 NIICDSLYVVNLVNSLETAKIKPVPDEELYLLFRTTQMVIWQRQNKFFITH
FT                 IRSHTNLPGPLSEGNAKVDTLVASAFQDAVRSHSLLHQNAKSLKCQFDITK
FT                 RQAQEIIQQCSSCAQFSSTPLPPGANPRGLKANQLWQMDVTQYAPFGRWKY
FT                 VHVTIDTYSRVIWATAQTGEKVSHVIAHLLEAFAHLGIPSQIKTDNGTAYT
FT                 SKRFAEFCKLWNINHKTGIPGNSTGQAIVERANRTLKNQIQKQKGEYLTIY
FT                 EGDISKPKPIIPNKLLRIVLLTLNHFSIPEGLNATPMQTHFECHDTMDTVQ
FT                 QPWVFWRLPGDKDYRGPNRLITMGRGYACVSTDNGEIWTPSKHLKPWKGPL
FT                 PDARGAEEQAHQSSTAPAARDQDEKQTSIAAVSSQLPDGQAQGTGIEGNTG
FT                 ECTHSEH"
XX
SQ   Sequence 8083 BP; 2411 A; 1745 C; 1801 G; 2126 T; 0 other;
     ttctggcgcc cagacgtgcc taggacccac acctggcact ttctcgtggc attctacctt        60
     tatttctcac agcggtttgg gagggcgcgc cccaacacgt gaaggaattc ttcaggctcg       120
     cgtgaacgaa gccaaaagac gattcccttc aggtctggaa aaaggaaggt gagttggtct       180
     cagagatggg tttgactatt tcctcccacg caggctatat acgactcctc atgtcgttag       240
     tggaacaggg aggtaggaag gtctccaaag cgcagatcaa agccttgcta caggtgattc       300
     aaaaggcttt cccagccttc ccagccaagg ggacgctaga agttgcgcaa tgggacctaa       360
     tcggacagtc tttaaaggac tatcaaaagg aaggtaacag agtcaggaag acggtattta       420
     acacctggtc aattatcaga accattctag aggatttagc tactagtacc tatactgcag       480
     gggagaagga atttccacag actcaggaat taaaaaagca ggatttcaaa ggcactgctc       540
     ctgaggagac tgatggggga agggaaggag agtgttcaga gtggtctagg gatccgccag       600
     aggccccagg ctatagctgg aagaggagta aaacaaaaga gtcatttgca actccaaagc       660
     tgtatccttc cttagacact ctgacccctc cccctcccac tcctccacca gactacgggt       720
     tggcttcacg agtctccctc gtggcctccc cacccccacc ttgctcacct gaagtttcta       780
     agccttattc acccaggaat gagccgatct cgcctgctca aaaaggcaag gagggcattt       840
     ctgctttccc agtcaggtat atagaggacc ctgaggatgc caacagacgc attgcccagc       900
     ataagcccat agactgtaag gtcttgaaaa tgctcagaag cagcgtagtg aaaaacgggg       960
     caatcgcgcc attcacacta gcgctcctca gtaatctggc tcaacagaca ctcacaccgg      1020
     ctgactggta cctggcagcc gagtccgccc tcagcggagg tgactatttg acctggaaac      1080
     tgaaattcca tgatctatgt tccctgcagg cctccgagaa caggcaggca ggaatcaacg      1140
     tgccctttga acaattggta gggcaaggag aattcgaacc aattgctagg caaatcgcag      1200
     ccacagagca gatttttaac cagatagcca gcgcggccac taaggcatgg agagccctac      1260
     ccgggaagga ttcagagagc ttgtatacag agattatcca aaagcagaac gaatcttttg      1320
     ctgactttgt ggataggctc agtacagaag tccgcagaca tatccctcac gaagatgcag      1380
     ccaaggttct cattcgggac cttgcttttt taaatgctaa tgaacaggcc aggagagctt      1440
     tagctcccat taaagctaca gggaccctga cagatttttt aagagcttgc caagacatag      1500
     gcatgggtga gacacgaact gttttaacag tgagtgagca gcagggaatg ctcacagggc      1560
     attgccatgc atgcggcagg aaaggtcact atcgtagagc atgtccaaat agaagaccag      1620
     gaaagactcc aggtatctgc cccaaatgca gaaagggcag gcactgggct tccacgtgca      1680
     gagctagcaa taagcgaagt cttcccaaca cagggtctaa cacccagtta aactagactt      1740
     cgggccagcc ttgagcccag gagcaaatca gggcaggacc atgaggtatt cttttcgttt      1800
     ccctattata gcaaccgaaa gcatagtatt gaaagagaac tcagaaccta cttggattcc      1860
     agctagcttt cgtttcccag tacctcaagg tgctaaaggg ttaatactag gcgaccctga      1920
     cctcattgca aagggtttag aaatctttcc cacattgttt caggataagg agaccaatgg      1980
     gctccacatc ctggctgctg caaagccagc attttgcatt tcaaaggaca ataatctagc      2040
     ctatctgacc atattccctg aggctgattt ctctctaaag agcaagcttc aaaaaagcag      2100
     ccttgactcc acagcccatg gattgttttg gtctcaaaaa gtgactcagg ataggatggt      2160
     aatgtctttg tttgtagaag acagggttat atcaggcatc ctggactctg gagcagacat      2220
     ctcggtgatc tctgctacgg attggccaga gtcatgggaa gtcattgaac ctcaccagaa      2280
     gttaataggc ataggcactc ctgagcacat tctccaatca gcgaatactt tatcgtggtc      2340
     tgatagtgaa ggacatagag gtatatttaa accttatgta ctagatattg cccaatctct      2400
     gtggggcaga gaggtgatgt ccgcaatgaa cataacattg accacatcgg acaaactgca      2460
     cacggaattt gtgggtgcgg ctagcgtcgc cccactattt gctgacccta tcacatggtt      2520
     aagttccaaa cccatttgga ttaaccaatg gcctatatct aaggagaaat tagtacattt      2580
     agaggccata atacaggaac aattgagatt aggtcacata cgagaatcaa acagtccctg      2640
     gaacaccccg atttttctgg tgccaaagaa ggcagggaag tggaggctag tccatgatct      2700
     taggaagatc aatgaacagc taatggacat ggggacaagg caaccgggat taccttcccc      2760
     gggtccgatt cccataaact ggaagctgat agttatagat ttgaaggatt gttttttcaa      2820
     tatccgcctg tccccacaag attgtcacag atttgcattt tctgtaccct caataaatta      2880
     tggtactcct ttcaaaagat tcgaatggct gtgccttcca caaggcatgc gtgtaagcag      2940
     ctgtttatgt cagaaatatg tagctcatgc attagaaaag gttagacttg aacacgcgaa      3000
     ataccacata attcaatatg tagatgatat tctgttagca gcgccatcta gtggcgaagt      3060
     ggagatattg ctcgcagacg ccaccaaagc tttaacggcg gcgaatctgg tgatctctaa      3120
     ggaaaagatt caaaccacgc ccccttacaa gtacctagga acactagtgt atgatcaaga      3180
     gatccgtcca cagaaaattg agattcgtag agattccctg aatacgttga atgatttcca      3240
     gaagttatta ggtgatatta attggctcag accttttcta aaaatctcta caggacagtt      3300
     agaacacctg tatgccactt taaagggaga tgctgcttta tcatccccta gaacactgtc      3360
     tcccaaagcg gaggaggagt taaaggtagt ggaagaagcg gtatcaaaag ccagagtgta      3420
     tagaattgat ccatcattac ctttaatagc gtctgttcta cagaccaggt atactcccac      3480
     aggtgcttta catcaggatc aacacatcat agaatggatt cacttagcca atcaacaaac      3540
     taaatccctc actagctatc tagaacttat cattttactg ataactcaga tcagaaaaag      3600
     ggcaagacag ttaactggca tagatcctag tacaattcat gtgcctataa caagagagca      3660
     agttcagaat ttatttgcac agtctttgcc atggcaaatt gcttttgcag attatacagg      3720
     acagatagat aatcacattc ctgctaataa gatactgcag tttgtaaaat tgactcctat      3780
     tatttttcca agaatgacat ccatgcatcc ccttgtagat gctgtgaacg tttttacaga      3840
     tgcatcaaaa catgggagag caggagctgt agtccaggat agtacaatgt tattagacac      3900
     tacttatggc tctccacaaa aagctgaatt agctgcagtt cgcagtgtgc taagggatgt      3960
     agtacaagct tgtaatataa tctgtgattc attatatgtg gttaatttgg ttaattcgct      4020
     ggaaacagca aagattaaac ctgtacctga tgaggagtta tatctcttgt tccgtaccac      4080
     ccagatggtg atatggcaga ggcagaacaa attttttata acacatattc gttcacatac      4140
     taacctccct ggtcctctct cggagggaaa cgctaaggtg gataccttag tggcatctgc      4200
     ttttcaagat gcagttagat cacattcttt attgcaccaa aatgcaaaat ctctcaaatg      4260
     ccaatttgac attactaaaa gacaggcaca ggagataatc cagcaatgca gctcgtgtgc      4320
     ccagttctcc tctacacctc ttcccccagg agctaatcca cgaggactca aagctaacca      4380
     gctttggcag atggatgtga ctcaatatgc tccttttgga aggtggaagt atgtgcatgt      4440
     gacaattgac acatactcaa gggtcatatg ggccacggca caaacgggag aaaaagtttc      4500
     tcatgtcatt gcacacttgc tggaagcatt tgcgcatttg ggcattccaa gtcagataaa      4560
     aactgacaat ggtactgcat acaccagcaa aaggtttgca gaattttgca aactgtggaa      4620
     tataaaccac aaaactggaa ttccaggtaa ctccactggt caagcaatag tggagagagc      4680
     taacaggact ctcaagaacc agatacaaaa acaaaaagga gagtacctga caatttatga      4740
     aggtgatatc tctaaaccca aacctattat ccctaacaaa ctgttaagga tagtactttt      4800
     aactctcaat catttctcca tcccagaagg gctgaatgct acacctatgc agacgcattt      4860
     tgagtgtcat gatacaatgg acacggtgca gcagccctgg gttttttgga gattgccagg      4920
     agacaaagat tacagaggtc cgaacaggct aataacgatg ggtcgaggct atgcttgtgt      4980
     ttccacagat aatggagaga tctggactcc cagtaagcat ctcaaaccgt ggaagggacc      5040
     gcttccagat gcaaggggag cagaggaaca ggctcaccag tctagcaccg caccggctgc      5100
     ccgagaccag gacgagaagc agacgagcat cgctgctgtc tccagtcagc tacctgatgg      5160
     tcaagcgcag ggcaccggga tcgaaggcaa cactggtgaa tgcacgcact ctgaacactg      5220
     acattacatt tactctgatg acattcacta ttttgacttt gctgaacatc tgtcatgctg      5280
     aagtctactg gtccatcgtg cccaaacctc ctattttgag aatgttaact tggatggaca      5340
     agccccctct ggtatatgtt aacaacacgg actggctacc acaccctatt ctagccaaac      5400
     gtgttcctct agagtctgaa ggggctctgt acaattattc aggatctact gtgtatcctc      5460
     cattttgtat gtcttttaga aattcgttta ttggtaattc tttctgtgta ccacgcagac      5520
     atcaagcgtg gattgtcaaa aatgccactg acaacagtta tgtaggggtt ggcatgggtg      5580
     tgataggaat gggagatgag ttagcacgta agacgttcca acctaaacac cctgctaaca      5640
     agtacctatg tccaaatcag ataggtacgg tacaaaagga gttgccatgg acagattgtt      5700
     ctgtccgagt tcccagaaag gttaagatgc cggcaaccac agactttaac atttacaatt      5760
     gggcacccag gttacgttgt ggtcgctctg aacaactgac acggttagac aaatacactg      5820
     actatgagaa atggcacatg ccatgtcaga attttcagaa aattgaggac ttactagaag      5880
     tagacatggc tggttctaga cttgctattg aagcaggtcc tatacagaac acgcagtgga      5940
     agatagtggc tgccacgcag ccgatataca agtttaaggt caaggtgaag aactcaggac      6000
     ttgatcttga gtatgacagt cacatcaatg tcacagcatg tgtttttgct ccttatgtaa      6060
     tgctagtagg taacaacctt cgaattttta aaaatgacca aggtctatat gagatcaact      6120
     gcacaaaatg ccgactacat caatgcctta gtcctaaaca ccaagattca tatgttgcta      6180
     tcatgtatca tccaccttta atgtgggtac ctgtcaactt gacagagacg tgggcatcta      6240
     cgcctactgt gcacattgtt caaaaggcat ttaacatggt tatacatagg tccaagagaa      6300
     tggtcttgga aattgtagga gccgtagtct cagtaattgc catgatcaca tcactaacca      6360
     cggcaacatt ggcattaact tcctctatcc agaaccatga gttcatacag gaagtggtgt      6420
     ctaactcttc caaattatgg cacactcagc agagtattga cttagcttac agagatgagc      6480
     tggacagttt aaaagatgct gtgttttggt taggtaaaga ggttgaagct ttacacacaa      6540
     ggattactta tccctgtcat tacaatcaaa cgggttattg tattactccg ttgccatatg      6600
     ataatgtgtc atatgaatgg caactggtcg ttcagcacat caagggtgct tggggaagtc      6660
     ataacagcac cttggacatt attaagttgc aacagcagat caacaaatta gaccaaattg      6720
     tatatgagaa tgaagctgca aatatagctg caaattggga agcaacttta tcttccctag      6780
     atccccaaaa ttggtttggt agagctaatt taaccagcat tggtactatc attttattca      6840
     tattattggc tattggtttg attatacttt gcagcagaag ctgtaaaaac agagcctaca      6900
     ttcgaggcat actgccagaa ttggcacggt cttatcacac taggcaattg gtgcctgaaa      6960
     atgttgaatt gaacacaacc gttttatgaa agaccagagt atcatgatac tttacattcc      7020
     aatctttgat atatactgag aaggtgaagg catgtttgct atgtcacacg tctgtccctc      7080
     ctgaattgtt cagagaggat gtttttttct ttaaaggaat ctctcccacc acacaatcaa      7140
     aaagaaaagg gagaggaatc ttatagagat cagtatttct aagaaatctt acagagatca      7200
     gtattttgct ctaagatcag tatttatatt ttagaggaca ctttttaaag tcactcttga      7260
     ttgatcaacc ttgatttttt cttttgcact attaaggcca gaactttgag tataaagaag      7320
     gtactgttaa tgctctgatc cagaattatg aaggtgccaa gatttctaga attacagtca      7380
     ccttacggtc agtaagcatg agaacatgac agaaattgtt aattttcagt tgaccattct      7440
     ggagagtgat gtctgattgc atgcaacggg aatcatgatg aatctttcat tatggaccag      7500
     acagcctaag ccacggtgat gcattttcca tgtgaaatgg atgcttgagg ttggggaatg      7560
     cagagacata gtgcactgac gccctcagtc actggaggtc ctggcatcgt ccttccaacc      7620
     agtttcttag gtggcaggca tctggcagtg agagcgaata gatcccaaag atgcagaatc      7680
     agttcaagag aaggaaagca tttatccttc aggtccagag gaggtcagtt ttgctaatca      7740
     tgatgagatc tgacagcttc tcatggttct gactggtgaa gagtgacgta gttaactgaa      7800
     gcacctatct tgtcagacag agaacttcta cctcatgaaa ccaggatcag tgttatggaa      7860
     attatttttc tctttgacat ttttatattt tatataatta ttttgttaag cacatagata      7920
     gaaaaaaggt tcacacttga tttttatatt tgagttttat aatcgggttt gattttctca      7980
     ctgtgaattg ttatgattgt gcaccagtgt gtttatattt agcgtgtgtt gagttacatt      8040
     ttgatattac tctattcatt tgtgtgtcaa acaaaaaggg gga                        8083
//
ID   MER113      repbase; DNA   ; MAM   ; 519 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Interspersed repetitive element MER113.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER113.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-519
RA   Jurka J.;
RT   "MER113..";
RL   Direct Submission to Repbase Update (FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   Putative DNA transposon. Present in bovine genome.
CC   ~1000 copies per human genome.
XX
SQ   Sequence 519 BP; 181 A; 96 C; 69 G; 172 T; 1 other;
     tttcccaaac ttcagtcatt ttcataccac cttcatgatt tttgccatat ctatatacca        60
     cctgtactat ttatttactt aatttttctt taaattgact cacttttttt atttaaataa       120
     atttatttta aaaggaaact ttatatcact accataaatg gaaaaccagt atcacttgcc       180
     ataaatagaa ggtaaccata aaaataaatt acaatgaaaa caaaacaatg ttattaaatt       240
     ctagctagat actgttgcct gcctactgca aggctctgag cctgaggcct gctctctctt       300
     tgttaaaaag agagattagc aagtgttaga gaggtgttaa agacatacta agcaccaaac       360
     tgagactttc tccttgatgt aatcagaagg attgaaagag aattgaaaag ggaataactt       420
     tctcactatg tgattcaatg ttatttaatg ccatatccat gtnctaccta aaatcatctt       480
     taaataccac cagtggtaca tatcccacac tttgggaaa                              519
//
ID   ART2B_BT    repbase; DNA   ; MAM   ; 507 BP.
XX
AC   Z25526;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Bos taurus art2 (or Pst) repeat family DNA.
XX
KW   ART2B_BT; Art2 repeat family; BTART2B; Repetitive sequence.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-507
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Evidence for homological recombination with with participation
RT   of the bovine alu-like sequences.";
RL   Unpublished.
XX
RN   [2]
RP   1-507
RA   Plucienniczak A.;
RT   "ART2B_BT.";
RL   Direct Submission to Genbank (12-AUG-1993)PLUCIENNICZAK A., PP
RL   TERPOL, LABORATORY OF GENETIC ENGINEERING, P.O.W. 57, SIERADZ,
RL   POLAND, 98-200.
XX
DR   GenBank; Z25526; Positions    1253    1759.
XX
SQ   Sequence 507 BP; 154 A; 92 C; 134 G; 127 T; 0 other;
     ctgcagctac cactctccag ccatgaaatt aaaagatgct tactccttgg aaggaaagtt        60
     atgaccaacc tagatagcat attaaaaagc agagacatta ctttgccaac aaaggtccat       120
     ctagtcaaaa ctgtgttttt ttccagtagt catgtatgga tatgagagtt ggactataaa       180
     gaaagctgag cactgaagaa ttgatgcttt tgagctgtgg tattggagaa ttcgcttgag       240
     agtcccttgg actgcaagga gatccaacag tccgttctaa gaatcagtcc tgggtgttca       300
     ttggaaggac gatgctaaag ctgaaactcc aatactttgg ccacctcttg cgaacagttg       360
     actcattaga aaagactctg atgctgggag agattgggag caggaggaga aggggattac       420
     agaggatgag atgggtggat gacatcaccg actcaatgga catgagtttg agtaaactct       480
     gggagctgct gatggacagg gaggcct                                           507
//
ID   MC1_SS      repbase; DNA   ; MAM   ; 301 BP.
XX
AC   X51557;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   S. scrofa Mc1 satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; MC1_SS; SSMC1; satellite DNA.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-301
RA   Jantsch M.;
RT   "MC1_SS.";
RL   Direct Submission to Genbank (19-1989)Jantsch M., Carnegie
RL   Institution of Washington, Dept. of Embryology, 115 West
RL   University Parkway, Baltimore, Maryland 21210 USA..
XX
RN   [2]
RP   1-301
RA   Lopez R., Kristensen T., Prydz H.;
RT   "Database contamination.";
RL   Nature 355, 211-211 (1992).
XX
DR   GenBank; X51557; Positions       1     301.
XX
SQ   Sequence 301 BP; 77 A; 83 C; 76 G; 65 T; 0 other;
     ctggcaaacc aactccaaac gtgttctcct tcgccggaga aggctgattt ggcaggaaga        60
     agcctgtgtg cactgcccta gcaacgcacc atagccagct agggagggac ccacctaggg       120
     cccagggtac cgagctcgaa ttcgtaatca tggtcatagc tgtttcctgt gctgaaattg       180
     cttatccgct cacacaattc cacacacata cgagccggaa cgataaatgt gaaagcctgg       240
     gtgcctaatg agtgagctaa ctcacattaa ttgcgttcgc gtcacgccgt tcagctggaa       300
     g                                                                       301
//
ID   L1MB3       repbase; DNA   ; MAM   ; 930 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MB3) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1M3; L1MB3; L1MB3 subfamily; MER12;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   672-890
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-930
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [3]
RP   1-930
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [3] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   15%.
XX
SQ   Sequence 930 BP; 360 A; 149 C; 197 G; 222 T; 2 other;
     ttaatatcca aaatatataa ggaactccta caactcaaca acaaaaaaac aaataacctg        60
     attaaaaaat gggcaaagga cttgaataga catttctcca aagaagacat acaaatggcc       120
     aacaggcaca tgaaaagatg ctcaacatca ctaatcatta gggaaatgca aatcaaaacc       180
     acaatgagat accacctcac acccgttagg atggctatta tcaaaaaaac agaaaataac       240
     aagtgttggc gaggatgtgg agaaattgga acccttgtgc actgttggtg ggaatgtaaa       300
     atggtacagc cgctatggaa aacagtatgg cggttcctca aaaaattaaa aatagaatta       360
     ccatatgatc cagcaattcc acttctgggt atatacccaa aakaattgaa agcagggact       420
     cgaacagata tttgtacacc catgttcata gcagcattat tcacaatagc caaaaggtgg       480
     aagcaaccca agtgtccatc gacggatgaa tggataaaca aaatgtggta tatacataca       540
     atggaatatt attcagcctt aaaaaggaag gaaattctga cacatgctac aacatggatg       600
     aaccttgagg acattatgct aagtgaaata agccagtcac aaaaggacaa atactgtatg       660
     attccactta tatgaggtac ctagagtagt caaattcata gagacagaaa gtagaatggt       720
     ggttgccagg ggctgggggg aggggggaat ggggagttak tgtttaatgg gtacagagtt       780
     tcagtttggg aagatgaaaa agttctggag atggatggtg gtgatggttg cacaacaatg       840
     tgaatgtact taatgccact gaactgtaca cttaaaaatg gttaaaatgg taaattttat       900
     gttatgtata ttttaccaca attaaaaaaa                                        930
//
ID   ERV8_MD_LTR repbase; DNA   ; MAM   ; 583 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV8_MD, class 1 ERV from Monodelphis domestica - consensus of
DE   LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV8_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-583
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-583
RA   Gentles A., Jurka J.;
RT   "ERV8_MD, a young class 1 endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 390-390 (2005).
XX
CC   [2] (Consensus)
XX
CC   The corresponding internal sequence is deposited as ERV8_MD_I.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
SQ   Sequence 583 BP; 125 A; 154 C; 123 G; 181 T; 0 other;
     tgtcaacatg gaaatctaga gatccccagt ttatttagtt ggagtgtaga aaccccaggt        60
     tttgaccttg tcacaggaga gtttccccct gagggaaggt ccctcttcac cagacagtga       120
     acttcctggt agtttgggtg ggaacagcaa atcccatcca atattaaaca tcccttttgt       180
     cccaatggtt tcttccccct aggctaaagt ccatgaccaa ggtgacccag ccctaggctg       240
     agtctttccc ttttgtgtcc attgtggggc cccagcccct cactattatt cctgtctgga       300
     acttctcatt ttcctttctc accattgtaa agtcaatcaa ctgtccctct aatcctaaag       360
     cccccaggtc atctagagtg gtacataggt tccccaagtt cttttgttcc tcggagtcca       420
     tcctgagtcg gtggcactcc caggggctgg tgaccagagc gtcttgactc cggtgcagtc       480
     ttggaaatca gctctgttgt cgtagtagca gcgctaaccc cttttccctt gattaaagag       540
     tgattttgac tatttaatag ttctgtgttt tttctagttg aca                         583
//
ID   MER58B      repbase; DNA   ; MAM   ; 341 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   hAT DNA transposon from placental mammals.
XX
KW   hAT; DNA transposon; Interspersed Repeat; CHESHIRE_B; MER58B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-341
RA   Smit A.F.;
RT   "MER58B - hAT DNA transposon from placental mammals..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   22% div.
XX
SQ   Sequence 341 BP; 101 A; 75 C; 74 G; 91 T; 0 other;
     caggggtcgg caaactacgg cccgcgggcc aaatccggcc cgccgcctgt ttttgtacgg        60
     cccgcgagct aagaatggtt tttacatttt taaatggttg aaaaaaaaat caaaagaaga       120
     ataatatttc gtgacacgtg aaaattatat gaaattcaaa tttcagtgtc cataaataaa       180
     gttttattgg aacacagcca cgctcattcg tttacgtatt gtctatggct gctttcgcgc       240
     tacaacggca gagttgagta gttgcgacag agaccgtatg gcccgcaaag cctaaaatat       300
     ttactatctg gccctttaca gaaaaagttt gccgacccct g                           341
//
ID   ERV22_MD_I  repbase; DNA   ; MAM   ; 5870 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV22_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-5870
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-5870
RA   Gentles A., Jurka J.;
RT   "ERV22_MD, a middle-aged ERV1 class endogenous retrovirus from
RT   the opossum M. domestica.";
RL   Repbase Reports 5(11), 369-369 (2005).
XX
CC   [2] (Consensus)
XX
CC   ERV22_MD is a HERVR (class 1) type ERV with genomic copies that
CC   are around 80% similar to the consensus. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 5870 BP; 2056 A; 1032 C; 1026 G; 1756 T; 0 other;
     ccctggtgag tcagctagga gtttgattaa tctattaatt ttctattcct tatcaataat        60
     aggaacaagt aaaggtgtaa tcatggtgct agatatcatc ctacagttag taaaggaggt       120
     ggctccaagt taccacagac aactcccagt tcctgggacc ttaactctca ctgtttttta       180
     ttgtctctgg ttagtaccac ttatgggaat atttgtgctg tcctcattgt ttcaagggta       240
     tctattgtat caagtattta gtttaatcct tactaagaaa acaactaaaa gagagattaa       300
     tggagattag agttgtatat cttgaggatt gcatctctca attgactaaa actattggcc       360
     aacaaaataa aactatctct taaattgttc aacttaaaga tactatctct caaatggcta       420
     aaattataat gcaacaaaat gaccctacct gcctctctta ctgtttctaa ttctccaaag       480
     cagataaaac aaaaactaaa agaaagaaaa tgctaaccct agcctactcc ctttaagaga       540
     agtaccaact tttaatacaa agaagaaaga gtaactacta ggcaccacag accatttacc       600
     catcaggata tgaagccatt taagcacagc attccttctt ttgaggaaga gcccatagct       660
     gtgatttaaa aagctagaaa ctatatgcca tcaatttgat ccaacctggg ttgaatttga       720
     atatcttcta gatgagttac taactaaaaa ggaaaaggat aaagttatcc ggcttactaa       780
     tgaggagtgg agcgcagttc actggcctga gaatgaccct catttggact taacaatgaa       840
     agggactatg caatactgtg ccaagctagg gaggcagttc ttaatgcaat gagagcttgt       900
     tcagatagac ctggtacttg gacaaatttt gaaaagctaa cgctagagat agaaaatccc       960
     tcacgttcat gcacaaactt atagaactgg gaggaagata catatagaat tgaatagaaa      1020
     aagagacatt agacaattga aaaggcagtt tgtaaaaaat tgttgcaaag taatcattta      1080
     ctatttcaaa actggttgcc ctaaggatga atatggacct tgatgaatta aggagagtgg      1140
     cagtttatgt ttataatggg catgaaatga aagatgccaa tgatagtgat ttggtggatg      1200
     tatttagaaa ggagataaaa gttttaaaga aaaaaattga aaggcttgaa ataggatttt      1260
     gagttagcta tggctccggt tcgagaatat acaacccaaa gagaatatac aaaccagaga      1320
     ccaacttgtt acttatacag aaaaagggga cacccaatga taaattgcag atgctggaat      1380
     caaatattca ggaattttag gaataattgt gggaacttta ggaataacta ttctaggaac      1440
     aaaaacaatt ttagaaataa taacaataaa aacaatttcc aatttaaaca gtaaccaaaa      1500
     tgaggcaaat gacttgttac aatatatcct taatgaggca catccatgtc ctagccaaaa      1560
     tgtaaatcct cccaactaga ggaatctcag aggggtgcac atggaccttt atgaaggttt      1620
     gccaggggag aaaggactct ggaatcaaat agtgaaacat ttgatttccc agatacagat      1680
     ataatttccc cagtcatccc aatcaattct cccctagata ataatgaaca catgtgacac      1740
     tgaaaatagg taatacatta tataattgtc ttctagatac tggggcatca agatctgtgc      1800
     taatgagtac acctgatcct aattgtaatt ccattagctc tattagtatt gctggaacat      1860
     ctttggaagt ccaaaagctt ttaccacaaa tggtgtctgt gggaccttta tctacggagc      1920
     attcgttcct tttaatgcct aactccctta tgaatttatt agggagagat ctgttgtgca      1980
     aattaaaagc cacgatgata tgtactcaaa atggtgatat tacattagaa ctacttgaag      2040
     aatttctaaa tttgttccca gtactctttt taaataatca ggagatggat aaaactcaac      2100
     cttcaaaaat accaacagat atacccaaat ctctctgggc tacatcttct accaatgtag      2160
     gcctacttaa atcagcggtt tcagttcaaa ttagaatgag aggtggtcca cctccatcta      2220
     ttctgcaaaa tccattatca aaagaagcaa ttgaggaaat tactccagtg ataaattctt      2280
     ttatcaaaca gaaaataata atccccaaat ctgaataaaa tacatctatc ttgcctacta      2340
     aaaaatcaaa attatatgaa aatggaaaac tggtctatca atttgcccaa gatttaaggg      2400
     atattaataa tcaaaagaca tcctgttgtt ccaagtccat caactattat ttcttctatt      2460
     cctagtactg ctaaatattt cacagtaata gatctgtgct ctgccttttt ttcaataccc      2520
     atccatgaag attcccaaaa catattgcat tcacatggaa agggtctcaa tatacatggt      2580
     gctgtctgcc tcaaggttac atagaaagtc caactttatt ttcccaaatt ttgacacaag      2640
     atttggcaaa tattgagttt aaggagagct atttaataca ttttgtggat tatttgctct      2700
     tggcctcacc aaatgctaaa gcatgccaag aagatagcaa atatctcctg ttagttatat      2760
     aaaagaggac acaaaatctc aaaagcaaag gttcagtggt atctccccaa agtggaatat      2820
     ttaggatttg ttttatctga aggtttgcat ttatttctcc taagcataat ggagatatcc      2880
     aaaaactgag tgctccatcc actaaaagac aactaagagc aattttggga actacagggt      2940
     tttgcaggca atggattcct tgctatgcag aaatcgccaa acttcttata gtactaatga      3000
     aggatgtagt cactgaacca cttaagttga atgcagaaca cctagcactt ctaaattgaa      3060
     gcaggcaatt ttgtctgccc ttgctctagg catcacagat tacaaaaaaa cattcactct      3120
     gcacttacat gaatgaagaa gagcagcctc atgtgtgtta acacaagctt tagggcctgg      3180
     tcagcttcct attgcatatt attcagctca attaaaccca atagcttccg gagtaccacc      3240
     atgcctcaga ggtgtcctgc attagctctg ctagtaacaa aatctgcaga tttggtgttg      3300
     ggatgtccac taacaataat gcccacatga agtagaagca ttactgctaa gatatagaac      3360
     acaggcattc tcaggccaaa ggcttacaag atatgaaata actttattag gcaatgaaaa      3420
     catcacttta aaacactgca caacactcaa ccctgctaca ttgcttccag atttaccaat      3480
     cataggagaa ccattgcata attgtgaatc attagtgtct atggcagaaa aacctcatga      3540
     aaatctccta gacactccat tagaaaatgc agatctaatt ttgtttacag atggttcttc      3600
     ctttaatgag agatggtata cattacactg gagctgctgt agtcacagaa tttgcaactc      3660
     tgtggtcagc ttcacttcca tcaaatctaa gtgtacaggg tgcagaattc tcaacagtgt      3720
     taaggcaaag aattcataga tttaaaacat gcctgtgtaa ttgcaagaga caaaaaagca      3780
     acaatatata ctgattcaaa atatgccttt ggaatatgtc atgctgtggg tatcctttgg      3840
     cttcaaagag gtttcttaac atcagctggg aaaatcatcg caaatgcaaa aattataaat      3900
     gaagttcttg cagctctaca actacctgaa accctggcta tcgtacattg ctctgaccac      3960
     acaggtggga ctgcctttat ttagaaagga aaccaccgag cagatgttgt tgcaaaacct      4020
     gctgctgtag aaggccctga attgatttta aatttgacaa ttattaatga atcagattta      4080
     tcccttgcat ataatgaaaa agaggttaaa aagtggaaac aaaaatttaa ggctaaacaa      4140
     attaatggtg tatgggtggc atcagaagga aaaccaatac ttcctagaac tttttatcaa      4200
     caaatttgcc aatctattca taaaaatggt cattttggaa cacaaagcat tgtagattca      4260
     ataaagaaag tatggatatc ccctggcata acaaatatct cctcaaaagt atgtgcagct      4320
     tgtgcaactt gccaagccta taaccaacac agctttcaag gaaaagcatt tgggggatat      4380
     cctttagcct atacactatt tgaacatctc caaattgact ttatagcaat gccaaaagct      4440
     ggaaatgaca aattttgttt agttatagta gaccagctaa caagatggct ggaagcattt      4500
     ctaactgcaa gagccacatc agcgtttgta gccaaaatat tattaaaaga aataatgcct      4560
     cgatttgggt taccagcaag aattgattca gacagaggaa cacattttac agattcagtt      4620
     ttagcacaaa tatattcatg cctaggtata acaccaaaat ttcatgtgcc atatcaccca      4680
     cagagctcag gacaagtaga gagaatgaat agggaattaa agacaatgat aggcaaatta      4740
     tatactgaga ctcatttgaa atggccagat gctctacagt tagcattatt ctacttgcaa      4800
     agtagaccaa ggggagatct acatatctca ccatttgaga tgctgtttgt tcatcctcct      4860
     attcatgcaa aaccatttaa ccctgtatac acatcattgt taggaagaga tacaactatt      4920
     gctacatata taaaagatct acaaaacaag ataaaagaac ttcatgagtc aggagcaagt      4980
     gcaagctgga cctatagact tttcttttca tgatctgaat cctggagata cagtatatat      5040
     aaagaacttt cagcaaacag gagcaaccca gctggcctgg gaaggtccat tccaagtact      5100
     tttaacaacc cctacagcaa tcaagatagg agaaaagaca ttgtggatcc attgttctca      5160
     tgtgaaaaga gtacctgcca tccaagaaga ttcattgcat gcatcaagaa gaagactaca      5220
     aagacaactg gacactattt tcaaacattg aactcctgaa cttatatttt actgtttaat      5280
     aaagagattt gattttctta taaaggttta attttaaaat agaatagtaa tattcaatag      5340
     caagtataat tatatgatat tttatgctat attataggat ttaggatttc tatttagaaa      5400
     taattattat taacatactt ttttaagatt ataaaaaagt tattataata tacttttata      5460
     gaaaaagtta aaattaacta aatgatacat aaatggtaaa gtgttacaaa gtgttataag      5520
     tgttgatcaa cacccacctg gggggggggg catattatat ccacctcagg ggggatatta      5580
     taggttataa tgtatgtaat gtatatataa gtttcttgta tttttttgta cataataact      5640
     atgaggtaaa tttgtattaa taacttaggt ttttatttct gtagagtata ataagttttt      5700
     atttcttatg gtaagaattg tgtgattctg taactgtaaa tatttgtaat tgtatattat      5760
     ttgagacttg catgttgcaa gatttgcttt gctttctttc tctctctctt cacttcttct      5820
     tgttactaat atagagtata ggatagtttt gtttgaaaga tccattgcgg                 5870
//
ID   L1MC4       repbase; DNA   ; MAM   ; 2761 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 2.03, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MC4) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1MC4; L1MC4 subfamily; L1MC4a; MER42C;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   2162-2761
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1150-2761
RA   Smit A.F.;
RT   "L1MC4..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [3]
RP   1-2761
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [3] (Consensus)
XX
CC   ORF2 ends at bp 668; average divergence of copies from consensus:
CC   22-23%.
XX
SQ   Sequence 2761 BP; 1026 A; 428 C; 556 G; 692 T; 59 other;
     ctaatatacc taatatacaa aaaactctta aaattgaagg ataaaaagnc aaaaaccnaa        60
     tannaaaatg ggnaaaagac atgaacagac aattcacnaa aaatnataaa atggccctta       120
     agcatataaa aagatgttca ncctcacnta taattagaga aacgcaaatt aaaactacac       180
     cgagatacca tttctcaccc ancagatcgg caaaaattaa aaagtatggc aatatannct       240
     gttggcgagg ctgtggggna acnggnactc tcatacactg ctggtgggag tgcaaattgg       300
     tacaactnct ttggaagana atttggcagt ntctaataaa actacacntg cntttacact       360
     ttgacccatt agtcccactt ctagaaattt accctanaga aatacttcta acagntcaaa       420
     aatacacatg tacagggatg ttcatagcag tnttattnnt aatngtaaaa nattggaaac       480
     aatcnaaatg tccatcagca ggagaatggn tgaataaact atggtncatc cacacaatgg       540
     aatactatnc agctgtaaaa aagaatgagg aagatctctg taataatgtg gagngatttc       600
     ggaacatnnt nttnagttga aaaagcnang cgcaaaagag tatatatant atgctaccct       660
     tcatataaga aagaagggga tatgagaaaa tatacatata tctgctcatt tgtgcaaaaa       720
     gaaacacaga aaagataaan caganactaa tgagattggt tacccacagg gaannggtgg       780
     gaatggggag gaaaggacgg aaggaatggg gggcagtgac acttttctga gtataccttt       840
     ttgtatagtt ctaacttttg naaccatgtt aatgtttcac atactcaaga aatgaataan       900
     taaaatcaac aaggatgggg ganaactcaa aatgaaatac aaacagaaac aaatgaaccw       960
     aactgtattt caaatgaata acataaccac actgaagggg gtnaggaaga aaagaactaa      1020
     cccaagtaac ttttgaacac agtattttga ctatatgccc tcaggctaaa gacaaaaaga      1080
     actntaaaca aatattgaac tctagttagt aggcttattt tccgcagngg catgggttag      1140
     caattctgaa actactttct gtatattcta ggactgagca aataagtaaa tatattgngg      1200
     ataatgggag ccaggtttct cactgtcgga gaagggagtt acaaatatgg aaagggggaa      1260
     gactagaatg aaccctgtgg tgttggattg gaattggagg tatcagtgtg aactcatggt      1320
     ttttaatata natagatata cagacagaca gatatagaaa tagatataga tatatatgtg      1380
     tntgtgtata tgtgtatgta tatacgtaca tatatttcct agctctgtcc actgagaggg      1440
     cctagaagca atgacacccc agtagcaatg agcacaccta gcgcccagat cttggtttct      1500
     aaataccatt ctccactaaa aggaaccagg gctccttgga gaaatggctg attccagggc      1560
     tggggcaggg aaagtacaag atgagcctgg aacatcttgt tgtgccagaa agtaaggaag      1620
     tgctcaaaga atgatgggga catgtcaaaa ggacacagga gccagcttga aggggctccc      1680
     actggccaaa tctgggacaa tttgagcatc aaaataaata atgatagtaa tggattataa      1740
     cccattgaat aaaataagaa tccatgagtc catactgata taaataaata aataaataaa      1800
     tgggggagaa gggaaagctc ttccttacag tagaatgcca actaataaat gtagaaggaa      1860
     tgatggaatt agaaaatcac catttggcaa ccatcatagt aataattgat tcaggcaaga      1920
     atcatcaatg gatgctaaaa ctagtgggtg aaagtttgat gagnaacagg atatttacat      1980
     agtctcaaag tatctcccca caaaatactt attaattaca aaggggaaaa tagtaacttt      2040
     acagtggaga aacctggcag acaccacctt aaccaagtga tcaaagttaa catcaccagt      2100
     aatgggacaa atcgacatca tgtgcctcct gatatgatgc actgagaagg acacaacatc      2160
     acttctgtgg tattcctgcc aaaaatgcat aacctgaatc taatcatgag gaaacatcag      2220
     acaaacccaa attgagggac attctacaaa ataactggcc tgtactcttc aaaaatgtca      2280
     aggtcatgaa agacaaagaa agactgagga actgttccag attaaaggag actaaagaga      2340
     catgacaact aaatgcaacg cgtgatcctg gattggatcc tggaccagan ttttttttgc      2400
     tataaaggac attattggga caactggcga aatttgaata aggtctgtag attagataat      2460
     agtattgtat caatgttaat ttcctgattt tgatnattgt actgtggtta tgtaagagaa      2520
     tgtccttgtt tttaggaaat acacactgaa gtatttaggg gtaanggggc atcatgtctg      2580
     caacttactc tcaaatggtt cagaaaaaaa aatatgtata tgnanacaga gaatgataaa      2640
     gcaaatgtgg caaaatgtta acatttgggg aatctgggtg aagggtatac gggaattctt      2700
     tgtactattc ttgcaacttt tctgtaagtc tgaaattatt tcaaaataaa aagttaaaaa      2760
     a                                                                      2761
//
ID   MER42C      repbase; DNA   ; MAM   ; 1522 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   19-FEB-1997 (Rel. 2.01, Last updated, Version 2)
XX
DE   MER42 repetitive sequence; 3' LINE1.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; LINE1;
KW   MER42 family; MER42C; MER42c subfamily; Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1522
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1522 BP; 541 A; 229 C; 299 G; 380 T; 73 other;
     atgtayagka ggattgatca aataagtaaa cgtattnaag ataatgggag ccaggtttct        60
     cactgtcgga gaagggagtt acaaatatgg aaagggrgaa grctagaatg aaccctgtgg       120
     tattrgattr gaattggagg tatcagtrtg aactcatgrt ttttaatata yryryryryr       180
     tttttcctag tcctgtccac tgagagggcc tagaagcaac gacaccccag tagcaacgag       240
     cacacctagc acccagatct tggtttctaa ataccattct ccactaaaag gaaccagggc       300
     tccttggaga aatggctgat tctaggacta gggcaggaaa tgtacaagat gagcctggaa       360
     catcttgttr tgccagaaaa taaggaagtg ctcaaaaaac gatrrgggca trtcaaaagg       420
     acacagaagc cagcttgaag gggctcccac tggccaaatc tgggacaatt tgagcatcaa       480
     aataaataat rgtagtaatg gattataact cattgaataa aataaatatc catgagttca       540
     tactaatata aataaatgaa taaaawaaat aaatgagaar ggaaagctct tcttacagtn       600
     gaatgccaan taataaatnt agaargaata ataatagaaa aatcaccatt aggcaaayac       660
     cgcagtaata actgtttyag gcaagatcca tcgatagatg ctmtaattag tgggcgaaar       720
     tttgatgaga aacggratat ttgcatagtc tcaaagtatc tcctcacaag atatttatta       780
     attacaaagg gaaaaayagt gactttacag tagagaaacc tggcagacac caccttaacc       840
     aagtgatcaa rgttancatc accaaaaatg agacaaaytg acatcatgcg cyncctgatr       900
     tgatgcgccg agaagaacaa catsgcttct gtgatattcc tgccaaagat gcataacctg       960
     aatctaatca tragaaaata tcagacaaac ccaaattgag ggacaktcta caaaataact      1020
     ggnctgtact catcaaaart gtcaaggtca taaaagacaa rgaaagactg aggaactttc      1080
     tacntttgac ggaagactag arncatgaca actaaatgca acgcgggatt ctgrantgga      1140
     tcctggrtcg agaaatagtg ggagtttkta yctataaagg acattattgg gacanttgrc      1200
     gaaatttgaa tanggtctgn agattagata atagtattgt atcaatgtta atttcctgat      1260
     tttgataatt gtaytgtggt tatgtaagag aatgtccttg tttttaggaa anacacactg      1320
     aagtatttag gggtaaaagg ncatsatgtc tgcaacttac tctcaaatrg ttcagraaaa      1380
     aaaatnnata tayataarya gagaatgata aagcaaatgc ggyaaaatgt taacaattgg      1440
     tgaatctggg tgaagggtat acgggwgttc tttgtactat tcttgcaact tttctgtaag      1500
     tttgaaatta cttcaaaata aa                                               1522
//
ID   LTR13       repbase; DNA   ; MAM   ; 1007 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   16-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   LTR from a human endogenous retrovirus.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; LTR13;
KW   Long terminal repeat.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1007
RA   Pavelitz T., Rusche L., Matera G.A., Scharf M.J., Weiner M.A.;
RT   "Concerted evolution of the tandem array encoding primate U2
RT   snRNA occurs in situ, without changing the cytological context of
RT   the RNU2 locus..";
RL   EMBO J 14, 169-177 (1995).
XX
RN   [2]
RP   1-1007
RA   Smit A.F.;
RT   "LTR13..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   LTR of class II endogenous retrovirus HERVK13. 6 bp target site
CC   dups.
CC   This consensus represents a young subfamily, with copies on
CC   average
CC   7% diverged from consensus (<5% divergence excepting the 39 CpG
CC   sites)
CC   The tandem duplication at pos 313-368 and 366-422 is absent in
CC   some
CC   copies and tripled in others.
XX
SQ   Sequence 1007 BP; 240 A; 273 C; 241 G; 253 T; 0 other;
     tgtgggcggc aagccaccca ggtgccgagg caagagaccg agggcacgag ctgttccagt        60
     ataataaaat atataaaata agaatagtta tactagatat agatcttaga tatgattata       120
     tatgaatatc attaatcatt agtttgtagc aattactctt tattccaata ttataataat       180
     cctcgctcta caatcataac ctaggaaaaa ccaggccata cagagatagg agctgagggg       240
     acatagtgag aagtgaccag aagacaagag tgcgagcctt ctgttatgcc cggacagggc       300
     caccagaggg ctccttggtc tagcggtaac gccagcgtct gggaagacgc ccgttgccaa       360
     gcggaccgtg gtctagcggt agcgtcagtg tcaaggaaaa acacccgcta cttagcagac       420
     cgggaaaggg agtctccctt tccccggggg agtttagaga agactctact cctccacctc       480
     ttgtggaggg cctgacatca gtcaggcccg cccgcagtta tccggaggcc taaccgtctc       540
     cctgtgatgc tgtgcttcag tggtcacgct cctagtccgc cttcatgttc catcctgtac       600
     acctggctct gccttttaga tagcagtagc aaattagtga aagtactaaa agtctctgat       660
     aagcagaaat aatggcgtaa gctgtctctc tctctctcct ctctctctct gcctcggctg       720
     ccaggcaggg aagggccccc tgtccagtgg acacgtgacc cacgtgacct tacctatcat       780
     tggagatggc tcacactcct taccctgccc ctttgtcttg tatccaataa atatcagcgc       840
     agcctggcat tcggggccac taccggtctc cgcgtcttgg tggtagtggt cccccgggcc       900
     cagctgtctt ttcttttatc tctttgtctt gtgtctttat ttctacactc tctcgtctcc       960
     gcacacgggg agaaaaaccc accgaccctg tggggctgga ccctaca                    1007
//
ID   MLT1C       repbase; DNA   ; MAM   ; 467 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1C subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT1C;
KW   MaLR family; STIR; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Rouyer F., de la Chapelle A., Andersson M., Weissenbach J.;
RT   "An interspersed repeated sequence specific for human
RT   subtelomeric regions..";
RL   The EMBO Journal 9(2), 505-514 (1990).
XX
RN   [2]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1C retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 17%. Intermittant subfamily
CC   between MLT1B and MLT1D; 92% similar to MLT1B, except for a 67 bp
CC   deletion in MLT1B (pos 264-330).
XX
SQ   Sequence 467 BP; 139 A; 105 C; 113 G; 108 T; 2 other;
     tgttatgggt tgaattgtgt ccccccaaaa ttcatatgtt gaagtcctaa cccccagtac        60
     ctcagaatgt gaccttattt ggaaataggg tcgttgcaga tgtaattagt taagatgagg       120
     tcatactgga gtagggtggg cccctaatcc aatatgactg gtgtccttat aaaaagggga       180
     aatttggaca cagacacgca cacagggaga acgccatgtg aagatgaagg cagagattgg       240
     ggtgatgcnt ctacaagcca aggaacgcca aagattgcca gcaaaccacc agaagctagg       300
     ggagaggcat ggaacagatt ctccctcaca gccctcagaa ggaaccaacc ctgccgacac       360
     cttgatctcg gacttctagc ctccagaact gtgagacaat aaatttctgt tgtttaagcc       420
     acccagtttg tggtactttg ttacggcagc cctagnaaac taataca                     467
//
ID   CarLTR5_LTR repbase; DNA   ; MAM   ; 472 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-472
RA   Smit A.F.;
RT   "CarLTR5_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   5' similar to family-905, 3' similar to MER87 (and distantly to
CC   LTR36) Orientation based on those. 16% subst 4bp TSD.
XX
SQ   Sequence 472 BP; 102 A; 151 C; 94 G; 123 T; 2 other;
     tgaaagagga cttcagctac ctccattttg acctcaaact ttctaattga gttcttcttt        60
     ccagcttatc tcttaactca ggcaaaagac cctgngggca aagcatcccc tgatgggaac       120
     cgaaactacc ccctcaagca ataaggactg ccctgagcca gcaagacccc gcccgtgatt       180
     gaccccaaga caatgatcga cctgaccttc actgcccacc tgcacgtacc caccnacctt       240
     tgtcccacat tttccttata taaacctgga agtattttcg gcactttgga gacagtcttt       300
     gagacgctag tccgctgtct tcccggtgtt ggcctcactg aaataaattc ctttcttgtt       360
     tcaccaccac tcgtctctct gcctttggat tttgtcagcg gcgagtggcc gaacctggtc       420
     tgtttgggac ccccggagcc aggtgctctt gcacccctgc gccccggcta ca               472
//
ID   CarLTR1A1A_LTR repbase; DNA   ; MAM   ; 407 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-407
RA   Smit A.F.;
RT   "CarLTR1A1A_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 or 5 bp dups; 13-14% subst;.
XX
SQ   Sequence 407 BP; 127 A; 108 C; 62 G; 109 T; 1 other;
     tgatgaggag aacaaaggca aaagaaatgt agataaaatt aaatttcctt acaacttgca        60
     gcccattgat aaatacctga gacaggcaga gtgtgacatt cctcaaggaa ctcacagctg       120
     ccttaatgtt aatgctttgc tagaggcaaa aagcaacctt agcttgacaa tagccagacc       180
     tccaggatcc tgtaagtctt ctttaacata tgaaaatccc tttagaaact tcctttatct       240
     ctaccccccc caacttaaaa gtatataatc aatcgctcct cacaatcnca gtgcagctct       300
     ttctgcccac gggtcctgtc cccgtgcttt aataaaaaca cctttttgca ccgaaaacgt       360
     ctcaagaatt ctttcttgac cattcgctcc tggcccacat cacatca                     407
//
ID   MER33       repbase; DNA   ; MAM   ; 324 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER33;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   202-281
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-324
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
SQ   Sequence 324 BP; 111 A; 43 C; 48 G; 117 T; 5 other;
     ctgcgctgtc caatacggta gccactagcc acatgtggct attgagcact tgaaatgtgg        60
     ctagtccaaa ttgagatrtg ctgtaagtrt aaaatataca ccagatttca aagacttagt       120
     acgaaaaaaa gaatgtaaaa tatctcatta ataattttta tattgattac atgttraaat       180
     gataatattt tggatatatt rggttaaata aaatatatta ttaaaattaa tttcacctgt       240
     ttctttttac ttttattaat gtggctacta gaaaatttaa aattacatat gtggctcgca       300
     ttrtatttct attggacaac gctg                                              324
//
ID   CarERV2c1_LTR repbase; DNA   ; MAM   ; 666 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-666
RA   Smit A.F.;
RT   "CarERV2c1_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 bp TSD; 10-11% subst.
XX
SQ   Sequence 666 BP; 201 A; 191 C; 114 G; 157 T; 3 other;
     tgatgaggga gcagaaggcn agctgaggac aaagcagaag ctgacacccc gcaacccncc        60
     cccccacccc caggtgggat atgtgtgaca ttcctcaggc actcctggct gccctaaagc       120
     taaggaaagg aaaaacaaat agttaactta tagagatcac aatcctgcaa gacangagtc       180
     tccctcagtt tacaaatgtc ttagtaattt acaagaacaa agcattttta tcaataacct       240
     agcttccaga aggaaatgta gatacaatta aatgtcctta taacctgcag cccattgaca       300
     gatacttgaa gcgggcagag tgtaatgttc ctccaggaag ctcccaacta tcttaatgtt       360
     aatgccttgc tagaaggaaa aacaacctta acttgacaat ggcaaggcct ccagtatcct       420
     gtgagtcttc tttaacatat gaaaatcctt ttgaaacctc ccttttcctt acctccccca       480
     actcccaagt atataatcag ccacccctca caaccccggg gcagcagctc tttctgccca       540
     cgggtcctgt ccccgtgctt taataaaacc accattttgc accaaagacg tctcaagaat       600
     tctttcttgg tcgtcggctc cggacctcac cccaccaaac ctcacctaca ttccaaaact       660
     acatca                                                                  666
//
ID   CSINE       repbase; DNA   ; MAM   ; 320 BP.
XX
AC   .
XX
DT   26-NOV-2001 (Rel. 6.1, Created)
DT   26-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   SINE element associated with rabbit C sequence - consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; CSINE; C_OC;
KW   Rabbit C.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RA   Hardison C.R., Printz R.;
RT   "Variability within the rabbit C repeats and sequences shared
RT   with other SINES.";
RL   Nucleic Acids Res 13(4), 1073-1088 (1985).
XX
RN   [2]
RA   Ayres A.J., Price K.D., Pasqualone M.D., Cabell H.C., Miller W.,
RA   Hardison C.R.;
RT   "The 5' end of LINE1 repeats in rabbit DNA define subfamilies and
RT   reveal a short sequence conserved between rabbits and humans.";
RL   Genomics 14, 320-331 (1992).
XX
RN   [3]
RP   1-320
RA   Jurka J.;
RL   Direct Submission to Repbase Update (24-NOV-2001).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 320 BP; 53 A; 101 C; 87 G; 74 T; 5 other;
     ggccggcgct gtggcgcagt aggttaagcc tctgcctgca gtgccggcat cccatatggg        60
     cgccggttcr agtcccggct gctccwcttc caatccagct ctctgctrtg gcctgggaaa       120
     gcagtggarg atggcccaag tccttgggcc cctgcaccca catgggagac cwggaagaag       180
     ctcctggctc ctggcttcgg atcggcgcag ctccggccat tgcggccatt tggggagtga       240
     accaacggat ggaagacctt tctctctgtc tcctgtctct ctctctctct ctctgtaact       300
     ctgcctgtca aataaataaa                                                   320
//
ID   ERV8_MD_I   repbase; DNA   ; MAM   ; 6411 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV8_MD, class 1 ERV from Monodelphis domestica - consensus of
DE   internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV8_MD_I;
KW   RNaseH; integrase; reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-6411
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-6411
RA   Gentles A., Jurka J.;
RT   "ERV8_MD, a young class 1 endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 389-389 (2005).
XX
CC   [2] (Consensus)
XX
CC   There are approximately 20 copies in the genome that are >98%
CC   similar to this consensus. The single ORF contains integrase and
CC   reverse transcriptase domains. This consensus was reconstructed
CC   from the June 2005 release of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV8_MD_I_1p"
FT                 /translation="RGSEGIKGVFTVVSASPVGITHIVIVSHPIEILIDTG
FT                 ATMSVLNPTAFPSPLPRSDQKVSIVGITNHVQSVYLSQPLPFILGEVKDMH
FT                 SFLLSSDAPLHLLGRDFLDKYKATIEFSPGKEIRLSLSPSDAPPTFQILTA
FT                 PIIAYDLPQLEEVPSSLWATDSSDIGRILSAPPIQVQLDPSKPLPRVPQYP
FT                 LSREATEGIRPLIDSYLEAGILIKCTSPCNSPILGVRKPGGRGWRLVQDLR
FT                 AVNACVIPRAPVVPNPHNLLNQIPHSAKIFTVVDLCSAYFSVPLHADSQFL
FT                 FAFTWEGIQLCWTVLPQGYTESATYFSQVLKADLAGLKFPFGSTLLQYVDD
FT                 LLLCSPDAQSSREDSIVLLKSLAQKGHKVSKEKMQFVSSQVKFLGHLISAE
FT                 GRSLDPARVAAILNFPRPKTKRQLRGFMGLAGYCRLWVPSFSLVAKPLFDL
FT                 LKASSPEPLIWNEAAKIAFMDLKSALSSSPALGRPNYSLPFHLFLLERNGI
FT                 SLGVLSQKHGDHFRPLGYYSKSLDSVARGLPSCLRAVVAASDLLELVEEVT
FT                 LESPLTLHVPHAIEVLLNSHHTQHFSTSRLAKLEASLLAKSNITISRCKTL
FT                 NPATFLPDIEESDRDCTEGHDCVNIVDSVLSPREDLQEKELENPDFSWYTD
FT                 GSCLRNESGILVAGYAITTTAEVIEAGHLPSAISAQQAELEAVTRACELAK
FT                 GKRVNIYTDSRYAFGVAHDFGMLWQHRGYLTSSGTPIKNGAQVRRLLEALL
FT                 LPKAIAIIKIPGHSRENSPHAKGNALADQYAKEAARQVPTTIGLTLSDKEE
FT                 PIFENKLTQAEIVSAQEVMSRTIQEKLEKEGCVRNRDTGLWQGPNGCVVLP
FT                 DPLCRPMMEYLHSISHWGPDKLVSIARKYWWGRLRRAAEDVYLQCQICPKY
FT                 NXSKPLKPMPGKFPLPEAPFQVWQIDFIQLPPHAGYKFVLVMVCMFSRWVE
FT                 AFPCRQATATAVAKCLLEKIFPVWGIPREIHSDRGTHFTGSVVSQLLTAWP
FT                 VLHHLHCAYHPQSSGLVERVNGIIKVQLAKFMEDLNIPWPKALPIVLLNLR
FT                 ATPFGKLSLSPFEIITGRPMSLFPPYTDSMSTKVSLLSYCQGLAKTLQGLN
FT                 HLISQSVSRNSSSETPSTSKVKPGDWVYRKRHLRKDALQVRWDGPHQVLLV
FT                 NPSAAKLKGIESWIHLSHLKKAPTPKWSVKSMSDSKIRLTRRRR"
XX
SQ   Sequence 6411 BP; 1931 A; 1414 C; 1426 G; 1634 T; 6 other;
     ttaatggagg tcccaccgag atccgaagtc cccgcggcct gagccctcca gctaacgagg        60
     accccagact tgaggtacca cacacaacct gtttggggtt gggtcaggag tccggttagc       120
     aagggccagg taagcggctc tctcggaggt aggactcgca tctctggttt gggaataact       180
     cgctctttaa ttaagggatc cttagtcaat ttgtccatag tcattggaca tgggtaacag       240
     cttgtctgtt gtcccaaaat ttggtggggg cggtcagcag cccaaagaac cacctagaaa       300
     tacggccgca agttacatgg tttcgaagta tggacctgat gcaagcaagt acttagagaa       360
     atggcaagcg atgacaaagg ccaatccgaa ggtaagctgg ccaaggtggg gttcacttaa       420
     tgaggaaagg atgttgtttc tgcagtctgt tttaagtgaa gcaggtcgag aaattgaagg       480
     agacgaaaga gaagtcttca accaatggct cgaggagtac acccagagaa aacacaggtc       540
     agaacgatcc gtagaacaag agacgggtaa gaacaagaga aaggtaaggg aggaggagga       600
     gaatcaaggt gaacaaggca gggaagccac taaaaagcaa atagctgatt tacagaagga       660
     ggtagaaagc cttaaagaac tcctgaaagg ctctagcaac ccagcaacct ctttagacag       720
     catacctgag cccctagaat cacctgaggc acccatccct caattccctt ttaaaattaa       780
     gggaagggaa ggaaccaaaa caatgcaggt atcttttact ccttggacaa aaacagagct       840
     cagagccatg gccaaggaat tcccaaaggt tagagaaaac cccatagaat ttgccaagga       900
     atttgaatta actctctcta cataccagcc tggcctatca gacctttacc agctagctca       960
     catactagta ggttcaggag atgcagccca ctggtttaaa actgcaagtt gggagaaccc      1020
     tttagaatat attaatcagt taatggccag aaaggaagga cctgaagtcc atcttcagga      1080
     ggcaaagaag atgggagagg ctttgttaga agcaatcccc aaggcctttc caaaatctgt      1140
     aaattgggga aaaatccaaa tttgcactca gaaagaagga gaatctgtat ttgattttta      1200
     taatagattt ttagatacct tcagggcaaa ttctggactt tccccagata gcccagacac      1260
     cttaattacc tttaacaccc tctatgtgga agggttaaat aaggcccttg caaatctcct      1320
     caagagaggg aaagtagact ggaatttaac tcccacccct gacctagtct atctagcaag      1380
     taaattccaa caaacactga cagaagaaaa ggagaaggca gcagaggaaa tgacaaaaaa      1440
     aactaaccag atcatgaatt tgcagttaaa acactgggag cagaaggaga aaagaccgac      1500
     tgaaccctat tctgctgaaa aagcaggcgg gaggcaaaga gcctggagat gtcacttttg      1560
     ccaccagacc gggcacttaa aaaaagactg ccatcggctc cagggtaaga gggagagacg      1620
     ccaaggtaag tttcaatacc actcaggaaa gttcccccga aaggaacatc atgaggaagc      1680
     ctcacaatga cggggctccg agggtatcaa gggggttttc actgtggtgt ccgcctcccc      1740
     agtgggcatc actcacattg tgattgtatc ccatcctatt gagattctca tagatactgg      1800
     ggccacaatg tcagttttaa accccacggc ctttcctagc ccccttcctc ggagtgacca      1860
     aaaagtttca atagtgggga tcacgaacca cgtgcaatct gtttacttgt ctcaacctct      1920
     cccatttatt ctgggagaag tgaaagatat gcactccttt cttctttcct cagatgcccc      1980
     cctgcatctt ttgggtagag atttcttaga caaatacaaa gccacaattg aattttcccc      2040
     aggaaaggaa ataaggcttt ccctatcccc atcggatgcc cctcccacct tccaaatact      2100
     tacagctccc attatagcct atgatcttcc acagctggag gaagttcctt cctctctgtg      2160
     ggctactgat tcttctgaca tcgggagaat tttaagcgct cccccaatac aagttcagtt      2220
     agacccatcc aaaccccttc caagggtccc tcaatatccc ctctcacggg aagcgacaga      2280
     aggaattaga ccattaattg atagttatct agaggcaggt attttgataa aatgtaccag      2340
     cccttgcaat tcacccatac tgggtgtccg aaagcctgga ggccgagggt ggcgcctagt      2400
     tcaggattta agagcagtaa atgcctgtgt tatccccaga gctccagtag tccccaaccc      2460
     ccacaacctt ttaaatcaaa tcccacacag tgcaaaaatt ttcactgtag ttgatttatg      2520
     cagtgcttat ttcagtgtgc cactacatgc agacagccaa ttcctttttg ctttcacctg      2580
     ggaaggaatt cagctctgct ggactgttct gccccagggt tatacagaga gtgccacata      2640
     tttctcccaa gtactaaaag cagaccttgc tggccttaaa tttccatttg ggtccacctt      2700
     actccagtac gtggatgacc tacttctgtg ttccccagat gcccagtctt cgagggaaga      2760
     ttcgattgtg ctccttaagt ccttagcaca aaaaggccat aaggtatcta aagaaaaaat      2820
     gcagtttgtc tcttcacagg tgaagtttct gggacatcta atatcagctg aagggcgtag      2880
     cctggatccc gccagagtag ctgctatatt gaatttccca aggcccaaaa caaaaagaca      2940
     gcttcgaggg ttcatgggat tagctggtta ctgtaggtta tgggtcccat ctttctcttt      3000
     agtagccaag cccctttttg atctcctcaa ggcctcgtcc ccagaacctc tgatttggaa      3060
     tgaggctgca aaaattgctt tcatggactt aaagtcagct ctttctagct ccccagccct      3120
     ggggcgtcca aattattcac taccctttca ccttttcctt ttagaaagaa acgggattag      3180
     cctgggagtt ttgagccaga aacatggaga ccactttagg cctcttggat actacagtaa      3240
     aagtctagat tcagtggcaa gagggctacc atcatgccta agggcagtag tggcagcttc      3300
     agatttacta gaactagtag aagaagtgac attagaatct cctttaacac tgcatgtccc      3360
     acatgcaata gaggtgcttt tgaactctca tcacactcag catttttcca caagccgcct      3420
     tgcaaagcta gaagcctctc tcctggctaa gtccaacatc accatttcta ggtgtaaaac      3480
     ccttaatcca gccactttcc tgccagatat agaggaaagt gacagggatt gtactgaagg      3540
     gcatgattgt gttaacattg ttgattctgt tttaagtcca cgagaagatc tccaggaaaa      3600
     agaactggag aatccagatt tttcctggta tacagatggc tcttgtctcc gaaatgaatc      3660
     tggcatttta gtggccggat atgccatcac taccactgca gaagtcattg aagcaggrca      3720
     tctcccttcg gcaatttctg ctcagcaagc cgaattggaa gcagtaacca gagcctgtga      3780
     gctggccaaa ggaaagcggg taaacatata tacggatagc aggtatgcat tcggggtggc      3840
     tcatgatttt ggaatgttgt ggcagcatag gggataccta acttcctctg gaacccccat      3900
     caagaatggg gcacaagtcc ggagactgtt agaagccctc ttactaccaa aggcaatagc      3960
     aattattaaa atcccagggc actcacgaga gaattctccc catgcaaagg gaaacgccct      4020
     agcagatcag tatgccaaag aagctgccag gcaggtccca actacaatag gtctgacact      4080
     ttcagataag gaagaaccta tttttgagaa taagctgacc caggcagaaa ttgtttcagc      4140
     ccaagaagtc atgtctagaa ctatccaaga aaaactagag aaggagggat gcgttagaaa      4200
     cagggatact ggattgtggc aaggaccaaa tgggtgtgta gtcctaccgg accctctatg      4260
     ccgtcccatg atggagtact tgcattccat aagtcactgg ggaccagaca aattggtcag      4320
     catcgctcgc aaatattggt gggggaggtt gaggcgagca gcggaggatg tgtatttgca      4380
     atgtcaaatt tgccctaaat ataatrtcag taagccttta aaacctatgc caggtaaatt      4440
     cccattacct gaggcccctt ttcaagtatg gcaaatcgat ttcattcagt taccacctca      4500
     tgctggatac aaatttgttt tagtaatggt ttgcatgttt tctcgctggg tagaagcatt      4560
     tccatgcaga caggccacag caacagcagt agccaaatgc ttactggaaa agatatttcc      4620
     agtgtgggga attcctaggg aaatacatag tgatagagga acacatttca ctggttcggt      4680
     agtgtcacag ctgttaacag catggcctgt attacatcat ctacattgtg cctatcaccc      4740
     acaatcctca ggattagtgg aacgtgtgaa tggcatcatt aaagtacaat tagccaaatt      4800
     tatggaggac ttaaacatac cctggcccaa agcccttcca atagttctrt tgaacctgag      4860
     agccacacct tttggcaagc tctcactctc accattcgag ataatcacag gtcggccaat      4920
     gtctcttttt ccaccctata ctgactccat gagcaccaag gtttccctct tatcatactg      4980
     ccagggacta gcaaaaactc tccaaggcct taaccacctt atatctcagt cagtttccag      5040
     gaattcttcc tcagaaacac cctcaacatc taaagtgaag cccggagatt gggtatacag      5100
     aaagaggcac ctacgaaagg atgctctaca agtcagatgg gacggacctc atcaggtatt      5160
     gctggtaaat ccatctgcag caaaactaaa aggaattgaa agttggatac atctatctca      5220
     tctaaagaaa gccccaactc caaaatggtc agtaaagtcg atgagtgact caaaaatacg      5280
     gctgaccaga agaagaagat aaaaagaagt ttgaactggc taagtattct ttttctttta      5340
     aaatttctwt cattcacatg ttatmtctct gaaccataga ggtattggta agtttatttc      5400
     ccctgagaat tttatttacc ctgagcaaag tccttttaaa tagagaacct agaaaggaca      5460
     gagctattcc ccaaacttar ttgaagtagg aaaagtttta aaaagggaac atttttaccc      5520
     ttttgaagtt tgaaagtgac agctgagaat ttgcagcaaa gattccagag tgctaatttg      5580
     tctcaaagta gtatcagaag aggttaggaa gaaatgatgg agcctagaaa tgattgttag      5640
     taatagaaga taaatatttt aaatctggac catggttatg gttaagtagc taaaaggaat      5700
     gaaatcaatt tcaaaatccc tagcatctca acctccctaa aggggggtgt gtgagttgag      5760
     tgtataaggt tttaaattta aggaaaatta gaagcatttt aatagtgaga atttttctgc      5820
     ttttatattt ctacagtttg taggattttt atattttggt aaagtaaggc aatctttcta      5880
     attaagcatg taaattacat gattttatga tttgtgtgga aaagacatta ttaaaaatta      5940
     ataagatgga attacagatt taaggttagc agtgtggata atccttatag tgaataagca      6000
     tatagggagt agatcaagtc ctgttaaaga atgtgtttat agatctctct taagttttct      6060
     cttgcagcag caaggaagct gactgatacc aaaggaggag cctgccagag gacagaagtc      6120
     tgccagagag gaggctgaag gcatcatcag gacccaccag aagtgaaaga cttgagactt      6180
     tgggaattgg ggtagtgttt tgattgttag tcagtttttg gccaaaggca gactgcctgc      6240
     ctttctggct caattgtcaa tgcgccggtg gcattgggga acgcccccaa atgccaatca      6300
     ccaatatctg tgtccctaga ctttcccacc agtaggggat ggagtccaat cccatatagc      6360
     attactcatt tgtccatgtt tggtcagcga cgttcgtctt gaccaaaagg g               6411
//
ID   SAT1_CF     repbase; DNA   ; MAM   ; 532 BP.
XX
AC   AJ239528; AJ239529;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Canis familiaris satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; SAT1_CF; Repetitive DNA.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RA   Bentolila S., Bach M.J., Kessler L.J., Bordelais I., Cruaud C.,
RA   Weissenbach J., Panthier J.J.;
RT   "Analysis of major repetitive DNA sequences in the dog (Canis
RT   familiaris) genome.";
RL   Mamm. Genome 10(7), 699-705 (1999).
XX
RN   [2]
RA   Weissenbach J.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (22-FEB-1999)Jean Weissenbach,
RL   Genoscope Centre National de Sequencage, 2 rue Gaston Cremieux,
RL   91006 EVRY Cedex, France.
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "SAT1_CF consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 89%.
XX
SQ   Sequence 532 BP; 82 A; 173 C; 135 G; 137 T; 5 other;
     cctggtgact ctgttccaca cctgagcctc acctggacat gatgactctg gaactctctg        60
     gcctcatcct gacctggtga ctctggtccc atctggahgt cacctggacc aggtgattct       120
     ggtacccctc tggcctcaac cagttctggt gactctggtc ctccactgga cchcacctgg       180
     acctagtgaa tatgctccat ctgggcctca ttggactggt gactctgtcc ctacctgggc       240
     ctcatcggga catggttact gcatbgcttt tggcctcacc tggacctggt aactctggtc       300
     cctacctggg catcacatgg ttcctctgca tggcctgcag attggcctca cvtggacctg       360
     gtgagtgggg ttgcacctgg gcctcaccca tgcctggtga cacaggtccc cacgtgggcc       420
     tcttggacct ggtgaatctg gtccttacct ggtcctcacc cggaactggt aactctggtc       480
     accacctggg actcacctgg acctggttaa tbtggtcccc atctgggcct ca               532
//
ID   MER46C      repbase; DNA   ; MAM   ; 338 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner DNA transposon from placental mammals.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MER46C; ZOMBI_C.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-338
RA   Smit A.F.;
RT   "MER46C - Mariner DNA transposon from placental mammals..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   (Zombi_c)   14% div.
XX
SQ   Sequence 338 BP; 98 A; 71 C; 66 G; 103 T; 0 other;
     caggtccaca atcccttatc cgcaattccg aaatccaaaa agctctgaaa accgaaagtt        60
     ttttcataag tttggcacga actcatttgg cggcaaaacc tgacctgaac tgatatgagg       120
     ctatttatag tctttattta tcccacttag tgtgaatatt catatatttc gctgcagaaa       180
     tattaatgtg tttgattacg gggtgctgcc ccagaccccg ctgggggtgt tatataatat       240
     acggtatatg cactatatta cctttctaaa atccgaaaaa ttctgaattc tgaaacacat       300
     ctggccccaa gggtttcgga taagggattg tggacctg                               338
//
ID   BOVA2       repbase; DNA   ; MAM   ; 269 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 2.03, Created)
DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   SINE element; retroposon BOVA2.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; BOVA2;
KW   SINE element; retroposon.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RA   Lenstra A.J., Boxtel A.J., Zwaagstra A.K., Schwerin M.;
RT   "Short interspersed nuclear element (SINE) sequences of the
RT   Bovidae.";
RL   Anim Genet 24, 33-39 (1993).
XX
RN   [2]
RA   Okada N., Hamada M.;
RT   "The 3' ends of tRNA-derived SINEs originated from the 3' ends of
RT   LINEs: A new example from the bovine genome.";
RL   J Mol Evol 44 (Suppl 1), S52-S56 (1997).
XX
RN   [3]
RA   Kapitonov V.V.;
RT   "BOVA2.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [3] (Consensus)
XX
CC   Retroposon; (AGC)n tail; 5-15 bp target site duplications.
CC   BOVA2 retroposon is a homodimer of BOVA.
XX
SQ   Sequence 269 BP; 62 A; 70 C; 83 G; 53 T; 1 other;
     ggagaaggca atggcacccc actccagtac tcttgcctgg aaaatcccat ggacggagga        60
     gcctggtagg ctgcagtcca tggggtcgct aagagtcgga caygactgag cgacttcact       120
     ttcacttttc actttcatgc attggagaag gaaatggcaa cccactccag tgttcttgcc       180
     tggagaatcc cagggacggg ggagcctggt gggctgccgt ctatggggtc gcacagagtc       240
     ggacacgact gaagcgactt agcagcagc                                         269
//
ID   CfERVF1     repbase; DNA   ; MAM   ; 5896 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   ERV1 Endogenous Retrovirus from dog.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae.
XX
RN   [1]
RP   1-5896
RA   Smit A.F.;
RT   "CfERVF1 - ERV1 Endogenous Retrovirus from dog.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   tRNA-Phe-TTY priming. ORFs for gag (333-2003) and pol
CC   (2004-5552). Similar to CfERV4 Outside carivores products
CC   closest to HERV17. 1% subst.
XX
SQ   Sequence 5896 BP; 1297 A; 2040 C; 1250 G; 1307 T; 2 other;
     tttggtgccg aaacccggga ggagatcgag cccctgcaac agcacggagg ctctctcctc        60
     ttccgtcgga ctgggactcc gctctctttc tctgctgggg tcaccggact ccttgcggtg       120
     agtgttccct ggtttccgac cctctcccgg ggcgccctgt cctaatcgcg gccgcgtcag       180
     ggcaaaccct cctccgccac ctggtggctc cgcggttccg gggagtaaag gagacgtcct       240
     cactccacgg tgaccacttc tgtaagcagc agctcaattc acagtcgagg ggacgccctc       300
     ctccaagtct tgagctgata cgggaaggag ccatgggaac ctcccagtcc aaattcgatt       360
     ccaaaacgcc tttaggatgc ctactggcta atctccgaac tctggagtta gaccaggact       420
     tacgaaggcg acgccttatc cattactgta ccgtcgcttg gcctcaatat cggctgaata       480
     accaatcgca atggccacct gaaggcactt ttgattatca gatacttacg gaccttgata       540
     atctctgtag acgccaaggc aaatggtctg aggtgcccta tgtccaggct ttctggaccc       600
     tgcgctccag accagaactc tgctctagct gctcaacctt tcaggtactc ctagcccgct       660
     ctcccccgcc gactcttccc cactccacct ctagagactc caacttggcc cctccatccc       720
     ccctcgcgga gcctcctgaa gatctctcca ggccccctgt aagggcccca cacctgtctc       780
     ctcctcccta ccaacccgct ccccaacaac ctgtgtcccc gactccttcc tcaatctccg       840
     aaactccagg cccaggccca gcctcgagca taccctctcc aaccgttcct ctcctcccag       900
     ccccagaacc tcaaccacct tccagccccc tcccttcccc tcctatctct gcccgtacca       960
     gatccaaaaa ctcttccccg gacctggtct gccccttgag ggaggttgca ggggctgaag      1020
     gggttgtccg agtccatgcg cccttttctc tacaagacct atcccaaata gaaaaacgct      1080
     taggttcctt ttcggccaat cccgacaact acatcaagga attccaatac ttggcgcagg      1140
     cctatgacct aacctggcat gacttacatg tcatccagac caccaccctc accactgagg      1200
     agagggaacg tatccaggct gctgcccggg gacacgctga tcaggtccac cttaccgacg      1260
     ccacaatggc ggtcggtgct caggcggtcc ccgccgtaga gccaggctgg gattaccaag      1320
     acggtcaaga tggccgccgg cgccgcgacc acatggtccg atgtctcatc gctggcatgc      1380
     gggcggcctc taataaggcc gtaaattatg acaagatcag agaaatcata caggcccctg      1440
     acgaaaaccc agctatattc cttaaccggc tgaccgaggc attaattcag tacactcgct      1500
     tggacccggc ctgtcccgcg ggggccacgg ttctagccac acattttatc tctcagtcag      1560
     ccccagatat ccgcaaaaaa ttaaagaaag tcgaggaagg ccctcagacc cccatttctg      1620
     acctagtgag aatggcattt aaggtcttta actcccgtga ggaagccgca gagctgaagc      1680
     gacaggccag actccagcag aaggttcagc tacaaaccca ggccttggta gcagccctgc      1740
     ggccggccgg ctccaggagc cagcagaaag ggggaaccac ccgcacccct ccgggggcct      1800
     gcttcaaatg cggggctgaa ggccattggg cccgtcagtg ccccaacccg agggcaccaa      1860
     ctcgaccatg ccctctctgc catttgatgg gccactggaa atccgactgc cctagcctca      1920
     gggaatcctc ggcgcctcaa cgcgggggaa gacccgagac ggtgagtcca gccttccaac      1980
     tgctcgggtt ggaggacgac tgacggagcc cagcctcggc cgcccctctc acccaggccg      2040
     agcccagggt catgctccag gtagcgggta agtccatctc ctttctgctg gatacggggg      2100
     ctacctattc tgttctgcct tcctacgcgg gacctactcn accctcacca gtcgctgtta      2160
     tggggatcga cgggaactcc tccactccta gggccacacc tccccttact tgtagcctgg      2220
     atgggttccc cttctctcac tcattcctgg tgattccctc atgcccagtg cccctgctgg      2280
     gtagggatat cctccaaaag ctaggggcaa ctattcattt gtccccctct cctccctcct      2340
     caccctcagc tcgtctcatc ctatatctct ccactccatc tnctcctacc cctgatcaat      2400
     tacccttcgt gaacccccaa gtatgggata cctcggaacc tgtagtggcc tcccaccacc      2460
     ctcccgtcaa aataaaactc aaggacggtt ccaagttccc ctctagaccc cagttcccta      2520
     tctccctcct ccatcgcctc ggcctcaaac cgatcataga acgactaaag cgtcagggac      2580
     ttctgattcc cataagctct ccctgtaact cccccatcct gccggtccgt aaaccctccg      2640
     gagcttatcg attggttcag gacctccgac tcattaatga ggcaatagtc cctctccatc      2700
     cagtggttcc taacccttat accctgctat cccatatccc tccaagcacc actcacttta      2760
     cggtgttgga cctgaaggat gcctttttta ctattcccct acaccccgat tcctactttc      2820
     ttttcgcctt cacctgggaa gacccagaca cacatacctc tggacaatta acctggactg      2880
     tcctacccca ggggttccgg gacagccccc atatttttgg tcaggccttg gctgcggatt      2940
     tacagcaatg cctccttaag gctagtacct tactacaata tgtagacgac ctcctcctct      3000
     gcagccctgc cctcaccatc tcccaggatg acaccacctc cctacttaac ttcctaggga      3060
     gcaaagggta tcgggtcaca ccctctaagg cacaactctg caccccttcg gtcacttatc      3120
     tgggaatcca cctgaccccc acctctaaat ctcttaccgg agaccgtatc cgcctcctac      3180
     gagagctcca accccctcag acggcagatg aaatactttc cttcctcggg ttggctggct      3240
     tctttagaca ctggattcca aacttttcta ttttggcccg ccccttatac caagcggcaa      3300
     aggacactcc ccagggtcct ctcactgatc cctcttcggt ccgccgcctg ttttccaagt      3360
     taagagactg tctcaccgct gggccgatac taactttgcc tgacccttca aaaccattcc      3420
     acctttacac tgatgagcgg tcgggttcag ctactggcct tttggcccaa ccggttggac      3480
     ctacttaccg gattatagcc tatctatcta agcagctaga cagcaccgcc cgcggatggc      3540
     agccctgcct tagggcgctc gcagctgctg cctccttaac taaggaggct ctcaaattga      3600
     ctttgggaca acccctcgtg gtttactccc cccatcgact tggggatctt cttagccacc      3660
     gatccctggc ccacctaacc ccctctcgtc tccaactctt ccatctgcta ttcatcgaaa      3720
     accctcaaat ctccctctct acctctcccc gcttaaatcc tgcaactctg ttgcctacac      3780
     cttcgcctac ctctgaaccc actcactcct gcccgcagct catagaggat ctcacccctc      3840
     cccaccctgg actctctgat cagccattat ccaaccctga ccgtatactc tttgtagatg      3900
     gcagctcctt cctggctgcg gatggtcgga gacacgccgc ctatgctgta gtcaccccag      3960
     agacggtagt ggagacagtc cccctcccaa ttgggactac ttcccaaaag gctgaactta      4020
     tagctctcac cagggctcta catctatcta agggacaacg agtcaccatc tacaccgact      4080
     caaaatatgc ctatctcatc gctcatactc attccgtcct ctggcaggag cggggatttt      4140
     taaccaccaa ggggacgcct atagtaaatg gacctctcat tgccaaattg cttgaggccc      4200
     ttagtctgcc cactgaggtt gcaatcgttc actgtagggg ccatcagact tctaaagaca      4260
     tggtctccat aggaaataat aaggccgact cagtggccag ggaaacggcc ttaagtaacc      4320
     caatatctcc catcctcttc cttaataccc ctcatcgacc ttcctactct ataaaggaaa      4380
     ctcaagccct ccaggccctg ggaggaaagg cagaaagtaa aggatggatt tacatccgag      4440
     ggaagattgc cctcccagaa aacctggccc ataccctaat tactgatatc caccaatctc      4500
     tccatattgg cccaagggca ctgaaccagt ttctccagcc cctgttttac tatccatccc      4560
     tacctaaggt gattgaggct gtccataggg cttgtaaaac ctgctcggcc gtaaatgcac      4620
     agggaggaat ccgcaggccg gggcctaacc atcagctccg aggccatcag cccggtgaag      4680
     actggcagct ggacttcact cacatgcccc gccataaagc ctttcgttat ctactgactt      4740
     tggttgatac ttttacagga tggattgagg cataccccac agccagagag actgcagatg      4800
     tggtggccac aatcctcatc gagcacatca tcccgaggtt tgggttaccc cggaccctac      4860
     agtcagacaa cgggccggca tttatctcca gtgtgaccca acaggtggcc gagagcctca      4920
     acattacctg gaagctgcac atcccctacc accctcagtc ttcgggtaag gtggaaaggg      4980
     ccaacgggct acttaaggct caactcacta aacttaccct ggagactcgc ctgtcgtggc      5040
     ccacactgtt acctatagct ctcaccagac tccgggcgtc cccccgagga ccatcaggtt      5100
     tgagtccctt tgagttactg tacggtcggc ccttccttat caaccacaac ctcccggcca      5160
     ttcctccacc tcttttatcc tatctgcctt accttaccct cctccgggcc ctcttgagag      5220
     cccatgccga tgctgtcatt ccggccccga ccgacaatgc ctccgaggaa gcctctccac      5280
     gagacttatc cccaggggac caggtccttc tcagaaatct gcagccaggc tccctgcaga      5340
     cccgatggac cggacctcac acggtcatcc tcaccacccc aaccgcggca aaattgctgg      5400
     gacatacggc atgggtgcac atcaacaacc ttaaacgggc acccacaggt atcgaatgga      5460
     cctcccagat ggtgggaccc accaaactcc gcctggctag ggctccttct catacttctc      5520
     ctgagccccc cgatccaagc ggtagaatgt gattgcatga aaggcagcgg tacctcgcgc      5580
     tacttttcat cttataccca catgcccaga acttgttact cagggaagac acccatcacc      5640
     tgtacttcaa gacatgccga aggaaccttt tggatgtctg aactttctca aaccagccga      5700
     tccccttgca gccggtaccc caagactgga acgcctgcaa gaactcaccc gggtatctgt      5760
     caaccaactt ttacttcacc catactctcg cctgcccaca tccgactacc cctacaacga      5820
     cgccccaccg tcagcaggaa gtagccagag cagagtcgac gcccccgaca ccattatata      5880
     aaacaaaagg tcggaa                                                      5896
//
ID   BTSAT1      repbase; DNA   ; MAM   ; 43 BP.
XX
AC   V00119;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine satellite DNA fragment.
XX
KW   SAT; Satellite; Simple Repeat; BTSAT1; Repetitive sequence.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-43
RA   Pech M., Streeck E.R., Zachau G.H.;
RT   "Patchwork structure of a bovine satellite DNA.";
RL   Cell 18, 883-893 (1979).
XX
DR   GenBank; V00119; Positions       1      43.
XX
SQ   Sequence 43 BP; 8 A; 13 C; 13 G; 9 T; 0 other;
     caggcccgga tcacgtgact gagcatgcac tgttcacgtg gct                          43
//
ID   ERV6_MD_LTR repbase; DNA   ; MAM   ; 576 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV6_MD, a class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV6_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-576
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-576
RA   Gentles A., Jurka J.;
RT   "ERV6_MD, a class 1 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 386-386 (2005).
XX
CC   [2] (Consensus)
XX
CC   The corresponding internal sequence is deposited as ERV6_MD_I.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
SQ   Sequence 576 BP; 156 A; 122 C; 114 G; 183 T; 1 other;
     tgtagcaaag gaaaataaaa gttatgcaag gaatttgatt gacagggcat cgagactcag        60
     aattctccca gggctgtcag gattctaaac tgttgaagag acagttcccc aactgacact       120
     ctggacctga grggaagcct ggaaggtgaa gatctgatct ctcctggact cccctggaca       180
     gctagcaagc agcctctttt aattctacca tacaaggttg agaggacata tccatacatc       240
     tggtggacag agtgaaactt ggagaaaccc tcttttccct gggacaattg agaacatcag       300
     ctggattcct gtttctgact caccaaggac tctttgtgtg tgagaaatct gatccctgtt       360
     ggacttgcct tagaaactta ggtatttagt ttagagtatt tagtcagata gtgggtttaa       420
     ttagagtggg tttaatgggt taattgtcag atgctaacct tttcccctca ttccctatcc       480
     ttcatccctt ctctgttaaa ataaattcaa tatttatatg tttttccctc tgtattactt       540
     tccttccccc tatccaaatt atatttactt ttaaca                                 576
//
ID   L1-4_MD     repbase; DNA   ; MAM   ; 1267 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   L1-4_MD, a subfamily of LINE1 element from Monodelphis domestica
DE   - consensus sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1-4_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-1267
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-1267
RA   Gentles A., Jurka J.;
RT   "L1-4_MD, a subfamily of L1 element from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(10), 313-313 (2005).
XX
CC   [2] (Consensus)
XX
CC   Genomic copies of this fragment of L1 are ~80% similar to the
CC   consensus. There are approximately 198000 hits to this sequence
CC   in the current genome assembly, making it the most prolific of
CC   the L1s identified so far, in terms of number of copies. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
SQ   Sequence 1267 BP; 505 A; 170 C; 244 G; 343 T; 5 other;
     tgatttagaa taaaggatac ataagcaaat tagaggagca tgaatctgtc agatctatgg        60
     ataagggaag aatttatgac caaacaagaa tagagaacat tacaagatat aaaatagata       120
     attttgatta cattaaatta aaaaggtttt gcacaaacaa aaccaatgca accaagatta       180
     gaagggaaac aaaaactggg aaaaaatttt tatagcaaat gtctctgata aaggcctcat       240
     ttctcaaata tatagagaac tgagtcaaat ttataagaat acaaatcatt ccccaattga       300
     taaatggtca aaggatatga acaggcagtt ttcagatgaa gaaatmaaaa ctatctttag       360
     tcatatgaaa aaatgctcta aatcactatt aattagagaa atgcaaatta aaacaactct       420
     gaggtaccac ctcacaccta tcagattggc taatatgaca gaaaaggaaa atgataaatg       480
     ttggagggga tgtgggaaaa ttgggacact aatgcactgt tggtggagtt gtgaactgat       540
     ccaaccattc tggagagcaa tttggaacta tgcccaaagg gctataaaac tgtgcatacc       600
     ctttgaccca gcaataccac tactaggtct gtatcccaaa gagattaaag aaaaaggaaa       660
     aggacctatt tgtacaaaaa tatttatagc agctcttttt gtggtggcaa agaattggaa       720
     attgaaggga tgtccatcaa ttggggaatg gctgaacaag ttgtggtata tgattgtaat       780
     ggaatactat tgtgctataa gaaatgatga acaggatgat ttcaraaaaa cctggaaaga       840
     cttatatgaa gtgatgcaaa gtgaagtgag cagaaccagg agaacattgt acacagtaac       900
     agcaatattg tataatgatc aactatgaat gacttagcta ttatcagcaa tacaatgatc       960
     caagacaayt ccaaaggact yatgatgaaa aatgctatcc acctccagag aaagaactga      1020
     tggagtctga atgcagatta aagcatacta tttttacttt atttctttma tgagtttttt      1080
     tttatgtgtc ttctttcaca acatgactaa tatggaaata tgttttgcat gatagcacat      1140
     gtataaccta tatcaaattg cttgctatct tagggaggag aaaggggagg gagggaaaga      1200
     gagaacttga aaatgtcaaa aaaataatgt ttaaaattgt ttttacatat aattgaaaaa      1260
     aaaaaaa                                                                1267
//
ID   OSSAT2      repbase; DNA   ; MAM   ; 816 BP.
XX
AC   K02607;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Sheep 1.714 g/cm3 satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; OSSAT2;
KW   Satellite repetitive element.
XX
OS   Ovis sp.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Caprinae; Ovis.
XX
RN   [1]
RP   1-816
RA   Reisner H.A., Bucholtz A.C.;
RT   "Apparent relatedness of the main component of ovine 1.714
RT   satellite DNA to bovine 1.715 satellite DNA.";
RL   EMBO J 2, 1145-1149 (1983).
XX
DR   GenBank; K02607; Positions       1     816.
XX
SQ   Sequence 816 BP; 152 A; 217 C; 247 G; 200 T; 0 other;
     ccctcatctc gagctacgag gcggaaacgg ggctcctctc gatgtgcgcg ggaccctcgt        60
     gcttcctctc gagtggagac gggtatgtcg gggaacttct tgagttgcag caagggtgtg       120
     aaggagcttt tttaagttcc agaggttagg tgtaattagc ctcgagaagc ctcagtggaa       180
     atgggcctca tttcacctgg agggcaaaac ctcctggatt ttcttgagtt ggggcaggtg       240
     ttctcgactt acgatgggga cctcacggac cccctctggt ggcctcagga ctggccaatc       300
     cccattcgag ttgctcgggg gactctcggg attcctctcg catccatgca gggaccgaag       360
     accttgtgtg gagtcgggcc cggaacctga ggattcctct ccagtgctga cttggacctt       420
     ggggtactta tagagtctcc ccaggggagt cagttctcct ctcgagaggg ggcatgcacg       480
     tgcgctttcc tcccgaactt agcagcaatg tcatgcttcc gttcgcgtca gtcatgggat       540
     ctgtggcttt ccctcgagga tttcccacga ggctttccca cgaggctttc ccacacggct       600
     gttccacgtg ccatcgtggt gggagtcgat cctcggcgtg aaaatcgagg cagtgcaggg       660
     aaaacagttt tctctggaat ggactgagac atctggggga cactgggaat gttggcacga       720
     cgctggagtt cctctctcct ttcctgtgga gagcgcctcc tcttgagatg cgacgggaac       780
     gcctggaatt ctttcccgac caataaggga aaggat                                 816
//
ID   CarERV2c2_LTR repbase; DNA   ; MAM   ; 653 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-653
RA   Smit A.F.;
RT   "CarERV2c2_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 bp TSD 10% subst.
XX
SQ   Sequence 653 BP; 196 A; 181 C; 118 G; 158 T; 0 other;
     tgatgaggga gcagaaggca agctgaggac aaagcacaag ctgacacccc gcaacccccc        60
     cccccactcc caggtgggat atgtgtgaca ttcctcaggc actcctggct gccctaaagc       120
     taagggaaag gaaaaacaaa tggttaactt atagagatta cagtcctgca agacatgagt       180
     ctccctcagt ttacaaatgt cttagtgatt tacaagaaaa aagcattctt atcaataacc       240
     taacttccag aaggaaatgt agataaaatt aaatgtcctt ataacctgca gcccattgac       300
     aaatacttga ggcaggcaga gtataatgtt cctccaggaa gctcccaact gtcttaatgt       360
     taatgccttg ctagagggaa aaacaacctt aacttgacaa tggcaaggcc tccagtatct       420
     tgtaggtcct ctttagcata tgaaagttct tttgaaaacc tcccttttcc ttacctcccc       480
     caactcccaa gtatataatc agccacccct cacaaccccg gggcagcagc tctttctgcc       540
     cacgggtcct gtccccgtgc tttaataaaa ccaccatttt gcaccaaaga cgtctcaaga       600
     attctttctt ggccgtcggc tccggacctc acctacattc caaaactaca tca              653
//
ID   MLT2D       repbase; DNA   ; MAM   ; 388 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JAN-1998 (Rel. 3, Last updated, Version 3)
XX
DE   Interspersed repeat MLT2D - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; MLT2D;
KW   MLT2D LTR.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
CC   [1] (Consensus)
XX
CC   This sequence is a human endogenous retroviral LTR.
XX
SQ   Sequence 388 BP; 102 A; 81 C; 82 G; 122 T; 1 other;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acattagtct gggtgtttct gtgaaggtta ttttttggat gagattaaca tttaaatcgg       120
     tagactgagt aaagcagatt accctcccta atgtgggtgg acctcatcta atcagttgaa       180
     ggcctgaatg gaaaaaaagg gctgaccctc ccccaagtaa gaggaaattc tgcctgcctg       240
     atngtcttcg aactggaata tcagctctgc ggattttgga cttgccagcc tccataattg       300
     catgagccaa ttccttataa taaatctatc tactctctct acacacaccc tattggttct       360
     gtttctctgg agaaccctga ctaataca                                          388
//
ID   RTE-1_MD    repbase; DNA   ; MAM   ; 4088 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   RTE-1_MD, an RTE-like non-LTR retrotransposon from Monodelphis
DE   domestica - consensus sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; RTE-1_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-4088
RA   Monodelphis domestica sequencing consortium ;
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-4088
RA   Gentles A., Jurka J.;
RT   "RTE-1_MD, an RTE-like non-LTR retrotransposon from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(10), 329-329 (2005).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus of full-length copies is ~96%.
CC   There are around 38000 matches in the current genome assembly.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           711..4037
FT                 /product="RTE-1_MD_1p"
FT                 /note="Exo-endophosphatase, reverse transcriptase
FT                 domains, zinc finger."
FT                 /translation="DSTAHPNQGRGLEKVSQTLPALQTPGQHTAAGGSSPL
FT                 SGRNQRKNTKKLLLGAWNIRTLLDRENTPRPERRTALIGKELARYNIDIAA
FT                 LSETRLPEEGSLSEPTTGYTFFWKGRASNEDRIHGVGLAIKTSLLKQLPDL
FT                 PVGISERLMKIRLPLSKDRYATIISAYAPTLTSTEETIEQFYSDLSAVLHS
FT                 VPTNDKLILLGDFNARVGQDHERWKGVLGKHGVGKMNNNGLLLLSKCSEFE
FT                 LTITNTVFRMANKYKTTWMHPRSKQWHLIDYIIVRRRDIQDVKITRAMRGA
FT                 ECWTDHRLVRATLQMRIAPRHPKRAQTVRAFYNVSRLRDPSYLQTFQSCLD
FT                 NKLSAKGPLTGSSTEKWNQFRDAVKETSKAVLGPKQRNHQDWFDENNTAIE
FT                 DLLSKKNKAFMEWQNNPNSAPKKDRFKSLQATAQREIRKMQDRWWEKKAEE
FT                 IQRFADMKNYKQFFSALKTVYGPLKPTTTPLLSSDGDTLIKDKKGISNRWK
FT                 EHFSQLLNRPSSVDQSALDQIPQNRSIEQLDVPPSIEEVQKAIKQMSAGKA
FT                 PGKDGIPTEVYKALNGKALQAFHIVLTSIWEEEDMPPELRDASIVALYKNK
FT                 GSRAACDNYRGISLLSTAGKILARVILNRLLSSVSEQNLPESQCGFRPDRS
FT                 TIDMVFTVRQMQEKCLEQNLSLYIVFIDLTKAFDTVNRDALWVILSKLGCP
FT                 AKFVKLIQLFHVDMTGEVLSGGETSDRFNISNGVKQGCVLAPVLFNLFFTQ
FT                 VLRHAVMDLDLGVYIKYRLDGSLFDLRRLTAKTKTTERLILEALFADDCAL
FT                 MAHQENHLQTIVDRFSTATKLFGLTISLSKTEVLFQPAPGRPTNQPCITID
FT                 GTQLSNVNTFKYLGSTIANDGSLDHEINARIQKASQALGRLRCKVLQHRGV
FT                 STATKLKVYNAVVLSSLLYGCETWTLYRKHMKQLEQFHQRSLRSIMRIRWQ
FT                 DRITNQEVLDRANSTSIEVXVLKTQLRWSGHVIRMDPQRIPRQVFYGELSA
FT                 GLRKQGRPKKRFKDQLKSNLKWAGITPKQLELAASDRSSWRTHINHAATTF
FT                 EDERRRRLAAARERRHQATTAPPVTTGVPCPMCHKLCASAFGLQSHMRVHR
FT                 R"
XX
SQ   Sequence 4088 BP; 1176 A; 1168 C; 975 G; 768 T; 1 other;
     gggtgtatgg ggtgctcagg gaggggtagt atctctggta tggagggctt gtcgtgccct        60
     cctagggcag ctctccagcc tctgaccccc acctgacacc cagctctcac ttgtggctcc       120
     cagtagctgc tagcatgtgg cagcggccac accccgggca acggcttcga caggccggcc       180
     aaaccttgtg agggtagcca tcgggtcatc gacccctggt gaaccagggc tttgctcacc       240
     cagcatgtga agactgcttc ggctgaacag acggaagaaa ccaataagaa ggttcaacgg       300
     ctgagagggc gacgcagcaa agcactgtgg agtgcttagg gcgtgttgga gcacaaagga       360
     caacacggcc atccaatgca gctgaggaag tctccagatg taacaacttt tcgtgccact       420
     ggacccaggc ttccaacgcc gagagagtgg gactgtctct gtgcatcggc ttttccactt       480
     aaatctcttt cacgcacaag tatctttgtg cacactcatc tatcctaacc ccgtccaccc       540
     tcttcaagac ctgcggcgat gggggagtgg cgacgcaaca ggtggaggtg accactggca       600
     gttgtagtca cgatcctgca cgtaggcggc ccacggacca gtggtcgctc ggccctgtgg       660
     gcagcaggga cgttcggcag catcctgggc gactgagcag ccctctctag gacagcactg       720
     ctcaccctaa tcaagggagg ggactagaaa aggtgtccca aacattgcct gccctacaaa       780
     cacccggtca gcacaccgcg gctggcgggt catccccttt aagcggtcga aatcaaagaa       840
     aaaatacaaa gaaactccta ctaggagcat ggaacatcag gacattactt gatagagaga       900
     ataccccaag acctgagaga agaacagctc taatcggtaa agaactggcg cgatataaca       960
     tcgacatcgc agccttaagc gaaacacgct taccagaaga gggatcactc agcgaaccca      1020
     ccactggata caccttcttc tggaaaggta gagcctcaaa tgaagacaga atccacggtg      1080
     ttggcctggc catcaagacc agtttgctca aacagctgcc agacttgcct gtgggcatca      1140
     gcgagaggct catgaagatc cgtttgcctc tcagcaaaga ccggtatgcc acaatcatca      1200
     gcgcatatgc cccaacactg accagcacag aggagaccat cgagcagttc tactctgacc      1260
     tgagtgccgt cctgcactca gtgcccacaa atgacaagct gatactactg ggagacttca      1320
     acgcccgcgt tggccaggac catgaaagat ggaaaggagt gctcggcaaa cacggcgtgg      1380
     gcaaaatgaa caacaacggc ctactgctac tcagcaaatg ctcagagttc gaactcacca      1440
     tcacgaacac tgtgttcaga atggcgaaca aatataaaac aacgtggatg cacccaagat      1500
     caaaacagtg gcatctcatt gactacatca ttgtacgccg gcgagacatc caggatgtaa      1560
     agatcaccag agccatgaga ggagctgaat gctggacaga ccaccgattg gttagagcga      1620
     ctcttcaaat gcgcattgcg cctcgccatc caaaacgcgc ccagacagtt cgcgcatttt      1680
     acaacgtgag tcgtcttaga gatccatctt atttgcaaac attccagtcc tgcctggaca      1740
     acaagctgtc tgccaaggga ccactcactg gaagctcaac cgagaaatgg aaccagttca      1800
     gagacgcagt gaaggaaaca tcaaaggcag tcctaggccc aaaacaacgc aaccaccagg      1860
     actggttcga cgagaacaac actgctattg aagacctatt gagcaagaag aacaaagcct      1920
     ttatggagtg gcaaaataac ccaaactctg ctcctaaaaa ggacagattc aagtctctcc      1980
     aagccacggc gcagcgtgag atcaggaaga tgcaagaccg atggtgggaa aaaaaggcag      2040
     aagaaatcca gcggtttgct gatatgaaaa actacaaaca atttttcagt gccctcaaga      2100
     ctgtctatgg gccattaaaa cccaccacca ctcccttgct atcctctgac ggtgacactc      2160
     tcataaaaga taaaaaaggc atcagcaaca ggtggaaaga acacttcagt cagcttctca      2220
     accgaccctc ttcagtcgac caaagcgccc ttgaccagat cccccaaaac cgctccattg      2280
     aacaacttga cgtccctcct tcaatagagg aagtccaaaa agccattaaa caaatgagtg      2340
     caggcaaggc acccggtaaa gacgggatcc caaccgaggt gtacaaggcc ttaaatggaa      2400
     aggcgctcca ggcattccac atagtgctga ccagcatatg ggaagaggaa gacatgcccc      2460
     cagaactcag agatgcctcc atcgtagccc tatacaagaa caaaggctca cgagcagcct      2520
     gtgacaacta cagaggcatc tcactactct ccactgctgg aaagatcctc gcccgtgtta      2580
     tactcaacag actcctgtca tctgtttcag agcagaacct gcctgaatca caatgtggct      2640
     tccgaccaga tcgcagcacc atcgacatgg tcttcacggt gaggcaaatg caggaaaaat      2700
     gccttgagca gaacctgagt ctctacattg tcttcataga cctgacaaag gcgttcgaca      2760
     cagtgaacag ggacgcattg tgggtgatcc tcagcaagct cggttgccca gcaaaattcg      2820
     tcaaactgat ccagctcttt catgtcgaca tgacagggga agtcctatct ggtggagaga      2880
     cttccgatcg cttcaacatc tccaatggcg tgaaacaagg ctgtgtcctc gctccggtac      2940
     tattcaacct atttttcacc caagtattac gacatgctgt gatggatcta gacctgggcg      3000
     tctacatcaa ataccgactg gatggctcac tatttgacct tcgccgcctg actgcaaaaa      3060
     caaagacaac agagagactc atcctggaag ctctctttgc agatgactgt gctctcatgg      3120
     cccaccaaga aaatcatctc caaaccattg tggacaggtt ctccaccgca acaaaactgt      3180
     ttggcctgac tatcagcctc agcaaaacag aggtgctgtt ccaacctgca ccagggaggc      3240
     caacgaacca gccgtgcatt acaatcgacg gcacgcagct ttctaacgtc aacactttca      3300
     agtacctggg cagcaccatc gccaacgacg ggtccctaga ccacgagatt aatgccagga      3360
     tccaaaaggc cagccaggca ctcgggcggc tgcgctgcaa agtcctccaa cacagaggtg      3420
     taagcactgc gacgaagctc aaagtgtaca acgcagtggt cctcagctcg ctcctgtacg      3480
     gttgtgagac atggacactg taccggaagc acatgaaaca gctggagcaa ttccaccaac      3540
     gctccctccg gtcaatcatg aggatccgat ggcaggaccg aatcaccaac caggaagtcc      3600
     tcgacagagc caactccacc agcatcgaag tcmtggtcct caaaacccag ctacgatggt      3660
     ctggacacgt catccgcatg gacccacagc gaataccaag acaggtattc tatggtgaac      3720
     tgtcagctgg actcaggaaa caaggccgac caaagaaaag attcaaggat cagctaaagt      3780
     ccaacttgaa gtgggctggc attacaccaa agcaactaga actcgctgcc tctgacagaa      3840
     gcagctggcg aacccacatt aaccatgccg ccaccacctt tgaagatgag cgacgtcgac      3900
     gtcttgccgc tgcgcgtgaa cgccgacacc aggccacaac cgcacctccc gtaacaactg      3960
     gcgtcccatg ccccatgtgc cacaaactgt gcgcctcagc ctttggactc caaagccaca      4020
     tgagggtaca ccgtagatga aactgcacaa agacaatagt cattctcgat caccgagaga      4080
     ctaccact                                                               4088
//
ID   DNANA1_MD   repbase; DNA   ; MAM   ; 316 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.11, Created)
DT   19-OCT-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   DNANA1_MD; a probable non-autonomous DNA transposon from opossum
DE   Monodelphis domestica.
XX
KW   DNA transposon; Interspersed Repeat; non-autonomous; DNANA1_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-316
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-316
RA   Gentles A., Jurka J.;
RT   "DNANA1_MD, a probable non-autonomous DNA transposon from M.
RT   domestica.";
RL   Direct Submission to Repbase Update (19-OCT-2005).
XX
CC   [2] (Consensus)
XX
CC   Most similar to MER121. The consensus was reconstructed from the
CC   June
CC   2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 316 BP; 96 A; 55 C; 47 G; 118 T; 0 other;
     atgggcaaac ccagctgtgt tttgggttcg tcaaatatct caaactattt ttcaaatgtt        60
     ttgggtttgg caaaacccaa aatgcatttt gccaagcact ttttccctta atttttaaac       120
     ccatgtgtat tttaagggaa atttaatcca tatgtttctg attcatttac acttaactca       180
     tcaaaatgtt gttttgtaag agctatttga tgtccaagaa gccttttgag ccttttttat       240
     aagccttttt aagccttttt tcttagaaac aggaagttat attttgccaa gagtaaataa       300
     actcaaacac caaaag                                                       316
//
ID   MAR1        repbase; DNA   ; MAM   ; 250 BP.
XX
AC   .
XX
DT   24-MAR-2000 (Rel. 5.02, Created)
DT   24-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   tRNA-related SINE element from marsupials.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; MAR1; MIR;
KW   MIR3; THER1; THER2; tRNA.
XX
OS   Metatheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing elements
RT   with common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96, 2869-2874 (1999).
XX
RN   [2]
RP   1-250
RA   Jurka J.;
RT   "MAR1.";
RL   Direct Submission to Repbase Update (MAR-2000).
XX
SQ   Sequence 250 BP; 75 A; 60 C; 58 G; 56 T; 1 other;
     gctaggtggt acagtagata gagtgctggg cctggagtca ggaagactca tcttcctgag        60
     ttcaaatctg gcctcagaca cttactagct gtgtgaccct gggcaagtca cttaaccctg       120
     tttgcctcag tttcctcatc tgtaaataat gagctggaga aggaaatggc aaaccactcc       180
     agtatctttg ccaagaaaac cccaaatggg gtcacaaaga gtcagacaca actgaaacga       240
     ctngaacaac                                                              250
//
ID   ERV3_MD_I   repbase; DNA   ; MAM   ; 6974 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV3_MD, a class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV3_MD_I.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-6974
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-6974
RA   Gentles A., Jurka J.;
RT   "ERV3_MD, a class 1 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 379-379 (2005).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus of full-length copies is ~96%.
CC   There are two ORFs, the first of unknown function; the second
CC   putatively encodes typical ERV proteins including integrase,
CC   reverse transcriptase. Copies are flanked by 4 bp TSDs. The
CC   corresponding 618 bp LTR is ERV3_MD_LTR. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV3_MD_I_1p"
FT                 /translation="MGYLAWIAYFFYMFYDLFFVTIPDYIYFLLSIYETLQ
FT                 WLNISMYRLISFIPTYAGALFFVTKLYYALKIGVHLIFGKKAKDNEMAVTI
FT                 LAMKEEMMQLKEMMKQLTEEKQCGKGINTQQDIPKNNNVVQQENTDGAEGG
FT                 IPILPLRDQTSLQPDSGIIHIKTHKPFTTADLESLKRWMPSWFSEPMRCLK
FT                 EFKRAIRLYDPDFQDTEILLSELFSKREKQQFIDETRKNPNLTSWPEEGTD
FT                 LELSNNENLRYLRKAREDLLEAMKSFSKRPDTWGKFERLRQESGEHPSKFL
FT                 DRVIEVAEDVLGFENLTEQNLQHIRRQFVKGSNTPIRSYFKLQCPDWETLS
FT                 LEDLRKTATYIFSGHKEMLEEKDEIIKDLKAKLKEANSSSKYKEIEEIKNL
FT                 ATLQSYKPTRNYTQSNQRRNLPRCFLCGKMGHMVRDCYLKAQLFQANNKQR
FT                 SWKSNVKYSSNNTQTNAKCCDCNCKKSLQAPNLETMERYIQQGAKPRYSQV
FT                 VSGAAKQSQL"
FT   CDS           0..0
FT                 /product="ERV3_MD_I_2p"
FT                 /translation="SQVHGVTSKRKNGKGKRKNEKEGDCMQIELGVPKAQN
FT                 KTKEQIEEEIQLDNDVTEIKEKIFGTVEQATKKEEETELATVCNTQTVNEL
FT                 IEAHELTIEGSNGEENAITENIQISRPPGDNDTESRDDITKENTNDIIEKS
FT                 TLNPYAEEFQPIVTAQEKANTNIVMPSLSLHDNAIPLQTDDGLQNECSKQQ
FT                 EKSVDEEQNWDLNKIEIEAPMVQVCQQNENTEPRVMIKVGNEIYPALIDTG
FT                 ATKSVLKTSPEDSQITSYVQIMGATGKKQRVPKLKSKMVTLGPLTTEHTFL
FT                 LIPECPINLLGRDFLCKIGATIQCDKSGKIFLHLPKDSLKHYPLLFMGQVD
FT                 DEQVQNEGTIFEIPSDIPEGLWATHSSDVGILKSATPVKVEVKEGTPPRIP
FT                 QYKLSKEAIDGINPIIQSLLDQKILIPTISEYNTPIIPIKKTKCDSEGKVQ
FT                 WRLVQDLRAVNNFVKKSHAVIPSPSKIISEIPSNSRYYTVVDLCSAYFSIP
FT                 IAKESQKIFAFTWNGTQMTWGRLPMGFCDSPTAFCQILQQDLQNIRFKESK
FT                 IVHYVDDILLASPSAKVCYQDSKKLLLELYKKGHKVSKSKLQWVMPKVEYL
FT                 GFILEKGTRKISKKRVEDILKLSVPKTKKQLRAFLGVTGFCRQWIPGYSQI
FT                 TKCLMDLTKNTVTEPLKLMKEHLQALAQLKEAIITAPALGIPDYNKEFHLF
FT                 VHEARGIASGVLVQTLGPNFRPVAYYSTQLDIIEKGMIPCLRAIAATATMI
FT                 QKSSDLVLGSKLNVYSAHQLESILKKCHLQAFTQQRLSQYEIVLLSNENIT
FT                 LKRCQPLNPASLIPDLPLEGEPIHNCQETISVVEKPRNDLKDTPLEQPDIE
FT                 MYTDGSSRIVNGERYTGAAVVTLTETLWYASLPKHVSAQGAELVALLNALQ
FT                 IGKDKRVNIYTDSQYAFSVIHATAEIWKHRGFLTSAGKEIAYAKLIMQLLE
FT                 AVQLPKEVAIIHCRSHTGANDHVSLGNHRADITAKFGAREGPFHVLNFSIV
FT                 EQDNLTDAYNEQEIQSWIKNLGAKQIRGIWFSQLGKPILPKNLFYHVCNAI
FT                 HAQGHCGTQAVIDSVRRFWTAPGISSYAIRICQKCKICMQFNQGVYKTKGL
FT                 GGRPLAYTPFECIQIDFINMPKDKGFKYCLVIIDRLTRWPEVFPSKKNNAA
FT                 FVVKILLKEIIPRFGIPSKLDSDRGSHFTQSILNEIYKNLGIQATYHTPYH
FT                 PQSSGQVERLNKDIKTLIGKFCAETHQKWTNILPLVLFHLRTRPSGDLHIS
FT                 PFEMLYGHAIWQGRTCKPAYIAMIGGDCQLTKYIQALQTRIAELHEMGLIQ
FT                 QTVPLDYNLHNIKPGDIVYLKNFNRKLATDIKWTGPHEVLLTTPTAIKVAG
FT                 KDSWFHCSHVKPEKVQHHCNRHRR"
XX
SQ   Sequence 6974 BP; 2718 A; 1227 C; 1327 G; 1701 T; 1 other;
     gtttttggca gagccagcta ggttttccaa cctattttgt caagaatttg ggaaaaagaa        60
     ggcaattgga gttgtcagag aagttgggcc tgcatacatt tcaaaagcct gtgtgactgt       120
     gaaaagtaac cattttgaga gcagtgctga gtgcaactaa tctgcctagt gataccacgc       180
     ccaaaagaaa ccactcctcc tgaagggagg aggcgactct taaagggcca gacttaaaaa       240
     cattttttct gttgcaaaaa gcttttcaag atacaagacg gcaaagaaac tattacttgc       300
     catgggttat ctagcctgga ttgcatattt cttttatatg ttttacgact tattttttgt       360
     cacgattccg gattatattt attttctgct tagcatctat gaaactttgc aatggctgaa       420
     tataagtatg tatcgcttga tttcattcat tcccacatat gctggagcat tattcttcgt       480
     aaccaaatta tactatgccc taaaaatagg tgtgcatcta atttttggga aaaaagcaaa       540
     agataatgaa atggctgtga cgattttagc catgaaggag gagatgatgc aactaaagga       600
     aatgatgaag caactgactg aagagaaaca atgtggcaaa ggtattaaca cacaacaaga       660
     catacctaaa aataacaatg tagttcagca agaaaataca gatggggctg aaggtggaat       720
     accaatattg ccactaagag atcaaacaag cctacaacca gatagcggca taattcatat       780
     taaaacacat aaaccattta caacagctga ccttgaaagt ctgaaaagat ggatgccttc       840
     ctggttttca gaaccaatga gatgtttaaa agaatttaaa agagcaatta ggctttatga       900
     tccagatttc caggacactg aaattcttct ctcagaatta ttttcaaaaa gggaaaaaca       960
     acaattcatt gatgaaacta gaaaaaatcc aaatttaaca tcatggccag aggaaggaac      1020
     agacttagag ttatctaata atgaaaatct acgttaccta agaaaggcca gagaagattt      1080
     attagaggca atgaaaagtt tttcaaaaag accagatact tggggaaaat ttgagagatt      1140
     gagacaggaa agtggggaac atccatcaaa gttcctcgat agagtgattg aagtagcaga      1200
     ggatgtgctt ggatttgaaa atttaactga acaaaatctc caacacataa ggagacaatt      1260
     tgtgaaaggc agtaacacac ctattagatc atattttaaa cttcaatgcc cagattggga      1320
     aacactaagt ctggaagatt taagaaaaac tgcaacttac atattttcag gtcataaaga      1380
     aatgctagag gaaaaggatg aaataataaa agaccttaaa gccaagctca aggaggcaaa      1440
     tagctcaagt aaatataaag aaattgaaga aataaaaaat ctagccactc tgcaatcata      1500
     caaacccaca agaaattaca cacaaagcaa tcaaaggaga aatttaccca gatgtttcct      1560
     ctgtggaaaa atgggtcaca tggttcgaga ctgttattta aaggcacaat tattccaagc      1620
     taataacaaa cagaggtctt ggaaaagcaa tgtaaagtat agcagcaata atacacaaac      1680
     aaatgcaaaa tgttgtgatt gtaattgcaa gaaatcattg caagcaccaa atttagaaac      1740
     catggagaga tacatccaac aaggagcgaa accacgttat tcgcaagtag tctcaggtgc      1800
     tgccaaacaa agtcagttat gaagccaggt gcatggggta acatcaaaaa ggaaaaatgg      1860
     gaaaggaaaa aggaaaaatg aaaaggaagg agactgcatg caaatagaac ttggggttcc      1920
     aaaagcacaa aataaaacta aagaacagat agaagaagaa atccaattag ataatgatgt      1980
     aacagagatt aaagagaaaa tttttggaac agtggaacaa gctacaaaga aagaggaaga      2040
     aacagaactg gcaacagtct gtaatacaca aactgtaaat gaattaattg aagcacatga      2100
     gctaacaata gaagggtcca atggggagga aaatgcaata acagagaaca ttcaaattag      2160
     cagacctcct ggagacaatg acactgaaag cagggatgat attacaaaag aaaataccaa      2220
     tgacataata gaaaagtcaa ccttaaatcc ttatgcagaa gaattccaac caatagtaac      2280
     tgcacaagaa aaagcaaaca caaacattgt tatgccatcc ttaagtctcc atgataatgc      2340
     aattccattg caaactgatg atggattgca aaatgaatgt tcaaagcaac aagaaaagtc      2400
     tgtagatgaa gaacaaaact gggatttgaa caaaatagaa atagaggcac ctatggtcca      2460
     agtgtgccaa caaaatgaga acacagaacc aagggtcatg ataaaagtgg gtaatgagat      2520
     ctacccagct cttattgata caggagcaac taaatctgtt ttaaaaacat ctcccgaaga      2580
     cagccaaatc acaagttacg tacaaataat gggggctaca gggaaaaaac agagagtacc      2640
     aaaactaaaa tcaaaaatgg taacactagg acccctaaca acagaacaca cattcttgtt      2700
     aatcccagaa tgcccaatca accttcttgg gagagacttt ttgtgtaaaa ttggagcaac      2760
     tattcaatgt gataaatcgg ggaaaatctt tctacatcta cccaaagact ctttaaaaca      2820
     ttatccattg ctgttcatgg ggcaagtgga tgatgaacaa gttcagaatg aaggtacaat      2880
     atttgaaata ccaagtgata tacccgaagg actttgggct acacattctt cagatgtagg      2940
     gattctaaag tcagcaacac cagtaaaagt agaagttaaa gaagggacac caccaaggat      3000
     accacaatac aaactaagta aagaagccat agatggaatc aacccaatta tccaaagctt      3060
     gttggatcag aaaattttaa tcccaacaat ttcagaatat aatacaccaa taatacctat      3120
     aaagaaaaca aaatgtgact ctgaaggaaa agttcagtgg agactggtcc aagatttaag      3180
     ggcagtaaat aactttgtga aaaagtccca tgcagtcatt ccaagcccat ctaaaataat      3240
     ttcagaaatc ccaagtaact ctagatatta tactgttgtt gatctgtgta gtgcttattt      3300
     tagcattcca attgcaaagg aaagccaaaa aatctttgct ttcacttgga atgggactca      3360
     gatgacatgg ggaagattac caatgggatt ctgtgatagc ccaacagcat tttgccaaat      3420
     cttgcaacaa gatttacaga acatccgatt caaggaaagc aaaattgtgc actatgtgga      3480
     tgacattctt cttgcatccc catctgctaa agtttgttac caggacagta aaaaactcct      3540
     cctagagcta tataagaaag gtcacaaagt ttccaaatca aaactacaat gggtcatgcc      3600
     taaagtggaa tacctaggat ttatcttgga aaaggggacg agaaagattt ccaagaaaag      3660
     agtagaagac atactgaagc tcagtgtgcc aaagactaag aaacaactga gagccttttt      3720
     aggagtgaca ggtttctgta gacaatggat cccaggctat agccaaataa caaaatgcct      3780
     tatggactta accaaaaaca cagtcacaga acctttgaaa ctaatgaaag agcatctcca      3840
     agccttggca cagctcaaag aagcaatcat aacagctcca gccttaggta ttccagacta      3900
     caacaaagaa ttccatctct ttgtacatga agcaagaggc atagcttctg gagtgttagt      3960
     ccaaacttta ggacccaatt ttaggccagt ggcatattat agtacacagc tagatataat      4020
     tgagaaagga atgattccct gtttgagagc aatcgcagcc acagcaacca tgatccaaaa      4080
     gtcatctgat ttggtattag gatcaaaact taatgtctac tctgcacacc aactagaatc      4140
     catattgaag aaatgtcatt tacaagcttt cacacagcaa agactttctc aatatgaaat      4200
     tgtgttacta agcaatgaaa acatcacttt aaaacgttgc caaccattga atccggcatc      4260
     cttgattcca gatctgccgt tagaagggga acccatacat aattgccaag aaacaatatc      4320
     agtagtagaa aagccaagaa atgatttaaa agacactccc ctggaacaac ccgacattga      4380
     aatgtatacc gatggttcga gcaggatagt taacggagaa aggtatactg gagcagcagt      4440
     agtaacacta acagagacat tatggtatgc gtccttacca aagcacgtga gcgctcaagg      4500
     ggcagagcta gttgctttat taaatgcttt gcaaatcggt aaagataaac gggtcaatat      4560
     ttacacagat tcccagtatg cattttcagt aattcatgcc actgcagaaa tttggaaaca      4620
     tagaggattt ttgacaagtg caggtaaaga gatcgcatat gccaaactaa taatgcaact      4680
     tcttgaggct gtacaacttc ccaaggaagt ggcaataatc cactgtagat cacacacagg      4740
     ggctaatgat catgtgtctt taggaaacca tagagctgac attacagcaa aatttggagc      4800
     tagagaagga ccttttcatg tattgaattt ctcaatagtt gaacaggaca atctaactga      4860
     tgcctataat gagcaggaaa ttcaatcatg gataaagaac ttaggagcaa aacaaataag      4920
     aggaatatgg ttttcgcaac taggcaagcc catcctgcct aaaaatttat tttatcacgt      4980
     gtgcaatgca atacatgcac aaggacactg tggaacccaa gctgtgatcg attcagtgag      5040
     acgattttgg actgcaccag gaatatcctc atatgccata agaatttgtc aaaaatgtaa      5100
     aatttgtatg caattcaatc agggagttta taagaccaaa ggcttaggag gtcgtccctt      5160
     agcatatact ccatttgaat gcatacagat agattttatc aatatgccaa aagacaaagg      5220
     gtttaagtat tgccttgtca tcatagacag actgactaga tggccagaag tttttccttc      5280
     caaaaagaac aacgcagcat ttgtggtcaa aatcctatta aaagaaatca tacctagatt      5340
     tgggattccc tcaaaattgg actcagaccg tggaagtcac tttactcagt caatattaaa      5400
     tgaaatttat aaaaatctag gaatacaagc aacataccac acaccatatc atccccaaag      5460
     ttcagggcaa gtggaaagat taaataaaga cattaaaaca ttgataggaa aattttgtgc      5520
     agaaacacac caaaaatgga caaacattct gccattagtt ctgttccatc ttagaacacg      5580
     acccagtgga gatttgcaca tctctccatt tgagatgcta tatggacacg caatttggca      5640
     aggaaggact tgtaaaccag cttacattgc catgataggt ggagattgtc aattaacaaa      5700
     atatatacaa gctttacaga caagaatagc agaattgcat gaaatgggct tgatacaaca      5760
     aacagtaccc ctggattaca atttgcacaa catcaaacca ggagacatag tatacttaaa      5820
     aaatttcaat agaaaattgg ctacagacat aaaatggact ggaccacatg aagtattgct      5880
     tactacccca acagctataa aagttgcagg gaaagactca tggtttcact gttcccacgt      5940
     gaaaccagaa aaagttcaac accactgtaa cagacataga agataattag acaacagata      6000
     gtgctgagaa atgaaaacaa aaactgatta acataaaaag tacaacacaa agaaataata      6060
     gtgacacata atgttcgaga caactttcca gcccagagga aaagcaaccc agaggaaaag      6120
     caacccagag gaaaagcatc ccagaggaaa agcaacccag aggaaaagca tcccagagga      6180
     aaagcatccc agaggaaaag attttaaacc agcccagagg aaaagcatca agaaaagatg      6240
     ctagagacaa gaaacaaaga ggaaaagctg aaatggacag ctaagacttt gaactttgta      6300
     aatttgttta tataagaaga ggacagatcg aaaatgagac ttatatgtaa gactgagtgt      6360
     gttgaaataa taaaacaaaa gtaatttcac atattaggga aatagcatgc atcactacat      6420
     aacatggaag aaagaagaga tccatcagtc aacatgagaa gtggaaatct gaagaaactt      6480
     gataagtatt aattcaacac aacactatta gacacaaaac acaaaatcac aaactgacat      6540
     attgagagac cttgtttata taaacaagtg tctgaaattg tatttatgca aaatgtaaat      6600
     atgtatatag ttagttccat aaggtcttag gcaaatagaa agatcaatag atatttctat      6660
     ttgactgaca tcatgatgtg gaacaatgta tattgttgta ttatatgtaa ataatttctg      6720
     taaataaggt attagtttta gttaacttag agtaagtagt attagcacta agattcaaat      6780
     ttcttgtaat agttttgttc aacatttatt gtactgaatt tattgtaaaa ccccaaaact      6840
     acccttaccc aaactttcct gcwaagaatt ccttagagta gatttagtaa attggtaact      6900
     ataatataaa tatgtgacct tgggaaggtc acaacaaaaa aaggggacga ttgtggaaag      6960
     gaaacaagac tgac                                                        6974
//
ID   L1S2_SS     repbase; DNA   ; MAM   ; 537 BP.
XX
AC   X15411;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Pig part of truncated L1 repeat sequence L1Ss.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 repeat;
KW   L1S2_SS; SSL1S2; Repetitive sequence.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-537
RA   Miller R.J.;
RT   "L1S2_SS.";
RL   Direct Submission to Genbank (07-1989)Miller J.R., Institute of
RL   Animal Physiology and Genetics Research, Babraham Hall, Cambridge
RL   CB2 4AT, U K..
XX
RN   [2]
RP   1-537
RA   Baay F.M., Miller R.J.;
RT   "Direct submission.";
RL   Unpublished.
XX
DR   GenBank; X15411; Positions       1     537.
XX
SQ   Sequence 537 BP; 206 A; 119 C; 96 G; 112 T; 4 other;
     aatcaatcaa tggaaaaatg ggcaaaagac ctgaatagac atttctccaa ggaagataca        60
     cagatggcca anaaacacat gaaaaaatgc tcaacatcgc tgattataag agaaatgcaa       120
     atcaaaacta ccatgagata ccacctcaca ccagtcagaa tggccatcat taataaatcc       180
     acaaataaca agtgctggag tggctgtgga gaaaaggaaa ccctcctgca ctgctggtgg       240
     gaatgtaaac tggtacaacc actatggaga cagtttggag ataccttaga aatcatatca       300
     tagatcttcc atatgacccc acaatcccac tcttgggcat ctatccggac aacaaaactc       360
     tacttaaaag agacacatgc acccgcatgt tcattgcagn actattcaca atagccagga       420
     catggaaaca atccaaatgt ccatcgacag atgattggat tcgnnagagg tggtatatat       480
     acacaatgga atactcctca gccataaaaa agaatgacat aatgccattt acagcaa          537
//
ID   FCLTR1      repbase; DNA   ; MAM   ; 57 BP.
XX
AC   M18636;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Cat endogenous xenotropic virus RD-114 partial LTR.
XX
KW   LTR Retrotransposon; Interspersed Repeat; FCLTR1;
KW   Long terminal repeat (LTR); Repetitive element.
XX
OS   Felis catus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Felidae; Felis.
XX
RN   [1]
RP   1-57
RA   Beyer W., Moehring R., Drescher B., Noetze U., Rosenthal S.;
RT   "Molecular cloning of an endogenous cat retroviral element (ECE
RT   1) -a recombinant between RD-114 and FeLV-related sequences.";
RL   Arch. Virol 96, 297-301 (1987).
XX
DR   GenBank; M18636; Positions       1      57.
XX
SQ   Sequence 57 BP; 11 A; 20 C; 13 G; 13 T; 0 other;
     gctctcccgc tttctaacac tgggagccct ggtgcaccag taaagactct ctgccga           57
//
ID   SINEC1C1_CF repbase; DNA   ; MAM   ; 159 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Dog SINE element SINEC1C1_CF.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   SINEC1C1_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-159
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1C1_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 87%.
XX
SQ   Sequence 159 BP; 19 A; 48 C; 45 G; 47 T; 0 other;
     gggtgcctgg gtggctcagt ggttgagcgt ctgcctttgg ctcaggtcat gatcccgggg        60
     tcctgggatc gagtcccaca tcgggctccc tgcatggagc ctgcttctcc ctctgcctgt       120
     gtctctgcct ctctctctgt gtctctcatg aataaataa                              159
//
ID   B_BT        repbase; DNA   ; MAM   ; 444 BP.
XX
AC   L14855;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Left arm Ba of the major repeat B.
XX
KW   BTB; B_BT; Neurexin I-alpha.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-444
RA   Ushkaryov A.Y., Sudhof C.T.;
RT   "Polymorphism of neurexins.";
RL   Unpublished (1993).
XX
DR   GenBank; L14855; Positions    2871    3314.
XX
SQ   Sequence 444 BP; 115 A; 113 C; 113 G; 103 T; 0 other;
     atatcctttg atttccgtac aacggagcca aatggcctca tcttatttag tcatggcaag        60
     ccacgacacc aaaaagatgc caagcaccca cagatgataa aggtagactt ctttgctatt       120
     gagatgctgg atggccacct ctacctcctc ctagacatgg ggtcaggtac aatcaaaatc       180
     aaagccctgc agaagaaggt gaatgatgga gaatggtatc atgtggactt ccagagagat       240
     ggacgctcag gtaccatttc tgtcaacacg ctgcgcacgc cttacaccgc tcctggcgag       300
     agtcagattc tggacctgga tgatgagctg tacctgggag gcttgccaga aaataaggct       360
     ggcctcgtct tccccaccga ggtgtggact gcgctgctca actacggcta cgtgggctgc       420
     atacgagatc tgttcattga tggc                                              444
//
ID   MARINERNA5_MD repbase; DNA   ; MAM   ; 595 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   MARINERNA5_MD; a probable non-autonomous Mariner element from
DE   opossum Monodelphis domestica.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; non-autonomous.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-595
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-595
RA   Gentles A., Jurka J.;
RT   "MARINERNA5_MD, a family of nonautonomous Mariner elements from
RT   M. domestica.";
RL   Repbase Reports 5(10), 324-324 (2005).
XX
CC   [2] (Consensus)
XX
CC   This sequence is probably a non-autonomous Mariner, based on 19
CC   bp terminal inverted repeats, and TA TSDs. Average similarilty to
CC   the consensus is 84%. The consensus was reconstructed from the
CC   June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 595 BP; 120 A; 194 C; 171 G; 110 T; 0 other;
     gaccagtgat ggtgaacctt ttagagatgg agtgctaggc cctgccccca ccccagaccg        60
     agtgccatgc cccccccccc cacctcaccc cccacccccc ccttacccca gacaggggag       120
     ggaggaagca ctcccattgg gctgctgggc agaggggtgg gtgatgagag gtacatgtgg       180
     agagggggag gagagtggcc ccagtgctct gctcccctcc agctatgtgc catgctgtga       240
     gctatgctcc cctcaaacct agctcctctc caaccccacc ataggaatca ccttcaccac       300
     agactcaaca ggctgccatc tgtgctgcac cctcatgcag catgtgagcc cccccccccc       360
     agcaccttac cccagacagg ggagggagga agcactccca ttgggctgct gggcagaggg       420
     gtgggtgaag tgaggaatgt cctcaggtgc atggagaggg ggaggggaac agctccaccc       480
     tgagtccctc tggctttcta gtaatgaact ctggtgggta actgcaggca tgcccacaga       540
     gagggctctg tgtgcccttt ttggcacatg tgccataggt tcaccatcac tgctc            595
//
ID   L1_Fc       repbase; DNA   ; MAM   ; 934 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   L1 Non-LTR Retrotransposon from cat.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Felis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Felidae.
XX
RN   [1]
RP   1-934
RA   Smit A.F.;
RT   "L1_Fc - L1 Non-LTR Retrotransposon from cat.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4% div.
XX
SQ   Sequence 934 BP; 349 A; 164 C; 230 G; 191 T; 0 other;
     ctagtatcca aaatctataa agagctcacc aaactccaca cccgaaaaac aaataaccca        60
     gtgaagaaat gggcagaaaa catgaataga cacttctcta aagaagacat ccggatggcc       120
     aacaggcaca tgaaaagatg ctcaacgtcg ctcctcatca gggaaataca aatcaaaacc       180
     acactcagat accacctcac gccagtcaga gtggccaaaa tgaacaaatc aggagactat       240
     agatgctggc gaggatgtgg agaaacggga accctcttgc actgttggtg ggaatgcaaa       300
     ctggtgcagc cgctctggaa aacagtgtgg aggttcctca aaaaattaaa aatagaccta       360
     ccctatgacc cagcaatagc actgctagga atttacccaa gggatacagg agtgctgatg       420
     cataggggca cttgtacccc aatgtttata gcagcacttt caacaatagc caaattatgg       480
     aaagagccta aatgtccatc aactgatgaa tggataaaga aattgtggtt tatatacaca       540
     atggagtact acgtggcaat gagaaagaat gaaatatggc cttttgtagc aacgtggatg       600
     gaactggaga gtgttatgct aagtgaaata agccatacag agaaagacag ataccatatg       660
     ttttcactct tatgtggatc ctgagaaact taacagaaac ccatggggga ggggaaggaa       720
     aaaaaaaaag aggttagagt gggagagagc caaagcataa gagactctta aaaactgaga       780
     acaaactgag ggttgatggg gggtgggagg gaggggaggg tgggtgatgg gtattgagga       840
     gggcaccttt tgggatgagc actgggtgtt gtatggaaac caatttgaca ataaatttca       900
     tatattgaaa aaaaataaaa aataaaaaaa taaa                                   934
//
ID   MARINER2_MD repbase; DNA   ; MAM   ; 1177 BP.
XX
AC   .
XX
DT   23-OCT-2005 (Rel. 10.11, Created)
DT   23-OCT-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   MARINER2_MD - a putative Mariner transposon from Monodelphis
DE   domestica.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; DDE transposase;
KW   MARINER2_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-1177
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-1177
RA   Gentles A., Jurka J.;
RT   "MARINER2_MD, an autonomous Mariner DNA transposon from M.
RT   domestica.";
RL   Repbase Reports 5(11), 397-397 (2005).
XX
CC   [2] (Consensus)
XX
CC   The coding region of this Mariner transposon is interrupted;
CC   however,
CC   the presence of 25 bp TIRs and TA target site duplications
CC   suggest
CC   that this is the complete element. There are at least 1700 copies
CC   in
CC   the current assembly; similarity to the consensus of those used
CC   for
CC   reconstruction was 90%. This entry was reconstructed from the
CC   June
CC   2005 release of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(94..303,307..915)
FT                 /product="MARINER2_MD_1p"
FT                 /translation="NHKLCIVHLSIHKKHGYLLGQMGNADQMPVCFDIPSN
FT                 VTINTKGAKSVLIKTTGNEKTRMTVMLAVTADGKLTPYVILRRKTLPKEKL
FT                 PSGVIFRVQEKGWMNEELVLDWLNVVWGRHLGALLHQRGMLILDAFKGHLT
FT                 ENVKKRIAEMHTDLVVIPGGMTSQLQVLDVVINKPFKDHLRKEYNEWMLAR
FT                 NHEFTPSGKIKKPSVTVLGNWIKTAWDKISTESIVLGFKKCCISNSMDGSE
FT                 DGVLWEEEGDGDDSNDVSTLGDEEIEEEGEHD"
XX
SQ   Sequence 1177 BP; 385 A; 180 C; 272 G; 339 T; 1 other;
     ccatattagc ccgaatatag tgtgatgttt tttcccccaa tatgtacctt tgaaagtcgc        60
     attcgcacta tatttgagca cttccagctt tgaaaccata agttgtgtat tgtgcacctc       120
     agcatacata aaaagcatgg ctatctcctg gggcagatgg gaaatgccga ccaaatgcct       180
     gtttgttttg atattccatc aaatgtcacc attaatacta aaggcgccaa atcagtgttg       240
     attaaaacta ctggaaatga gaaaactaga atgaccgtga tgcttgcagt cacagctgat       300
     gggtgaaaac tgactcctta tgtaatttta aggcgtaaaa cattacctaa ggaaaagtta       360
     ccatcaggag tgatctttcg tgtgcaggaa aagggatgga tgaatgaaga acttgtgtta       420
     gattggttga atgtggtctg gggtaggcat ctgggtgcgt tactgcatca gagaggaatg       480
     ctcatactcg atgcattcaa gggtcacctg actgaaaatg tgaagaagag aattgctgaa       540
     atgcacacgg acctagttgt tattccggga ggaatgacgt cgcaattaca agtgttagat       600
     gtagtaatta ataagccatt caaagatcat ttgaggaaag aatataatga gtggatgttg       660
     gccagaaacc atgaatttac tccatcggga aaaataaaga aaccatcggt cactgtatta       720
     gggaactgga tcaaaaccgc ttgggacaaa atctccactg agtccattgt gcttggattt       780
     aaaaaatgtt gtatatcaaa cagtatggat ggtagtgaag atggtgtttt gtgggaagaa       840
     gagggtgatg gcgatgactc gaatgatgtt tccactttgg gagatgagga aatagaagag       900
     gaaggagaac atgattaaat attggaaggt agtttctcac aagtatctat aaaagtaata       960
     catatttaat aaaagtgttg gcattaaaac ttctttaact tgttttcagg accttgaaaa      1020
     aacttcaaat ataaagtgcc tgcattattc atgagttaag agaaagttgt aatttaaaag      1080
     gagaaaataa aatgggtgtt tcctctttct gagttaccct tcaaaatact tgggatcgca      1140
     ctatattcgg ggtcatatta tattcrggct aatatgg                               1177
//
ID   LINE1E_OC   repbase; DNA   ; MAM   ; 916 BP.
XX
AC   M93325;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   LINE1 repetitive sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   LINE1 (L10c6) repetitive sequence; LINE1E_OC; OCLINE1E;
KW   SINE repetitive sequence.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RP   1-916
RA   Price K.D., Ayres A.J., Pasqualone M.D., Cabell H.C., Miller W.,
RA   Hardison C.R.;
RT   "The 5' end of LINE1 repeats in rabbit DNA define subfamilies and
RT   reveal a short sequence conserved between rabbits and humans.";
RL   Genomics 14, 320-331 (1992).
XX
DR   GenBank; M93325; Positions    1348    2263.
XX
SQ   Sequence 916 BP; 381 A; 153 C; 226 G; 156 T; 0 other;
     cacttggagt cctccaagat ggcagaatag ggggaaggag gaggaggggg agggggaggg        60
     ggagggggag gaggaaggag gaaggaggaa gaggaggagg aggaaggagg gaaggaggga       120
     gggagggagg atttaccacg ccaaacctgg gtgtgtcacc tttggcacac ccttaaccct       180
     gaagaactga acagagatct ggccataccc atcacaagcc tctaaagatc caccaaaagc       240
     agacagccca attaatctag agtcatagta taagaagaaa agccaccaca gcgaggaaaa       300
     aaagaagaaa ccaaagaata tctccacaac accaagcaac aaatgcagaa accgaggaaa       360
     caagaacaag gaagacatca tgacactccc aaatgaacat gacactccaa ttcaagatta       420
     tgaagatgat gagatagaag aaatgcaaga tcaggatttc aaaagattta tgataagaac       480
     atttagaagt tctcaacaac aaattcttaa actacagaaa tccttactgg acaggataga       540
     aaatctctcg cgtgaaaatg aaatcttaag gaggaatcaa gatgaaatga aggaatctag       600
     tagaactgaa attgtgatat tgaagagaaa tcaaaatgaa atgaagaatt cgaattcaaa       660
     agatcaaagg acaaacgcat tagagaccct taaaaacaga atcagtgaag cagaagagag       720
     aatatcagac ttagaagaca gagaacagaa agtatacagt caaaccaaaa tattgttgga       780
     atctaaggat actattaaaa ccaacattcg gtctaggagt tctgaacgca gagaggagaa       840
     gatagacagt tcaatggagc actacgagaa ctcagttgag agaataacga tctatcgaag       900
     ctatgaccta tacatc                                                       916
//
ID   MLT2B2      repbase; DNA   ; MAM   ; 503 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JAN-1998 (Rel. 3, Last updated, Version 3)
XX
DE   Interspersed repeat MLT2B2 - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT2B2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
CC   [1] (Consensus)
XX
CC   This sequence is a human endogenous retroviral LTR.
XX
SQ   Sequence 503 BP; 111 A; 129 C; 121 G; 134 T; 8 other;
     tgtgatggtt aattttatgt gtcaacttga ctgggctaar gggtgcccag atagctggtt        60
     aaacattatt tctgggtgtg tctgtgaggg tgtttccaga tgagattagc atttgaatca       120
     gcggactgag taaagaagat tgccctcacc aatgtgggcg ggcatcatcc aatccgttga       180
     gggcctgrat agaacaaaaa ggcagaggaa gggtgaattt gctctctctc cttgagctgg       240
     gacatccatc ttctcctgcc cttggacatt agaactccag gttctcgggc cttcggacty       300
     cgggacttgc accagcagcc ccccagattc tcaggccttc ggactcggac tgaryyacgc       360
     caccggcttc cctggttctc cagcttgcag acggcatatc gtgggacttc tcagcctcca       420
     taatcacgtg agccaattcc cctaataaat cycytctatc catcctattg gttctgtctc       480
     tctggagaac cctgactaat aca                                               503
//
ID   CfERVF1_LTR repbase; DNA   ; MAM   ; 457 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from dog.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae.
XX
RN   [1]
RP   1-457
RA   Smit A.F.;
RT   "CfERVF1_LTR - ERV1 Endogenous Retrovirus from dog.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   related to family-1577 5 bp TSD, but associated ERV clearly
CC   ERV1...  1% subst.
XX
SQ   Sequence 457 BP; 102 A; 138 C; 99 G; 118 T; 0 other;
     tgttggggcc aggcgggaag ggaaactcct caagatggcg gatacgccaa aatggctgag        60
     gttcctgtca ccacctccac ttgggacgac agcttgagca gacccttaca cctctccttt       120
     ggacttcctc aaccgaaccc aatgcccttc aaaccccaga ggaggaagtc acctttgact       180
     ggtcgaattg caatccttcc tttgcatagt gagggtcact ctgactggtt ggattgcaat       240
     ccttcctttg catatgagcc aaccaatagg aaaccgttct gccttacaac gttatgtaaa       300
     ccccctacca ccttgtcttg gcgcgacttc ctcgactcac tctctttccc ccgtgagtcg       360
     tggaacctcg cccgagggtg cctgcaataa aatctgttct tggaccctcg cttgccttgg       420
     cggtctcatt tccgtctagt tactaaaaaa cttaaca                                457
//
ID   ART2A       repbase; DNA   ; MAM   ; 551 BP.
XX
AC   M95097;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   01-JUL-2005 (Rel. 2.02, Last updated, Version 3)
XX
DE   Bos taurus ART2 repetitive sequence.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; ART2A;
KW   art2 repetitive sequence; BTART2A; Repetitive DNA.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-551
RA   Irwin M.D., White T.R., Wilson C.A.;
RT   "Characterization of the cow stomach lysozyme genes: Repetitive
RT   DNA and concerted evolution.";
RL   J. Mol. Evol (1992)In press.
XX
RN   [2]
RP   1-551
RA   Irwin D.M., White R.T., Wilson A.C.;
RT   "Characterization of the cow stomach lysozyme genes: repetitive
RT   DNA and concerted evolution.";
RL   J Mol Evol 37(4), 355-366 (1993).
XX
DR   GenBank; M95097; Positions    1565    2115.
XX
SQ   Sequence 551 BP; 131 A; 166 C; 95 G; 159 T; 0 other;
     attctgttaa tcttctgtca gtcagtcagt tcagtcgctc agtcgtgtct gactctctgc        60
     aaccccatga accacagcat gccaggcctc cctgtccatc accgactccc agagtttacc       120
     caaacccatg tccattgaat tggtgatgcc atccaaccat ctcatcctct gtcgtcccct       180
     tctcctcctg ccctcaatct ttcccaacat cagggctttt caaatgagtc agctcttcgc       240
     atgaggtggc caaagtactg gagtttcagc tttagcatca ttccttccaa agaaatccca       300
     gggctgatct cctttagaat ggactggttg gatctccttg cagtccaagg gactctcaag       360
     agctcttctc caacaccaca gttcaaagca tcaattcttc agtgctcagc cttcttcaca       420
     gtccaactct cacatccata catgaccaca ggaaaaacca tatccttgac tagacggacc       480
     tttgttggca aagtaatgtc tctgcttttg aatatgctat ctaggttggt cataactttt       540
     cttccaagga g                                                            551
//
ID   MARINERNA1_MD repbase; DNA   ; MAM   ; 357 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   MARINERNA1_MD; a probable non-autonomous Mariner element from
DE   opossum Monodelphis domestica.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Non-autonomous.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-357
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-357
RA   Gentles A., Jurka J.;
RT   "MARINERNA1_MD, a family of nonautonomous Mariner elements from
RT   M. domestica.";
RL   Repbase Reports 5(10), 321-321 (2005).
XX
CC   [2] (Consensus)
XX
CC   This sequence is probably a non-autonomous Mariner, based on 20
CC   bp terminal inverted repeats, and TA TSDs. Average similarilty to
CC   the consensus is ~76.5%. The consensus was reconstructed from the
CC   June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 357 BP; 135 A; 62 C; 58 G; 101 T; 1 other;
     caggtatccc ttccacatca tgactttccc catcatggtt ttgatatatc ataggtcrgc        60
     ataagaaatt aaatgggaat tttgggggag ttttgcagaa gccacagatg acatgcaaag       120
     gccagcagat gacacagaaa aagtttagaa actcagaaat gcataaaata tatgtatagt       180
     attatataat atcaatatat tttatctttt aataccataa atatacacaa tttcttttta       240
     aaaaaaaaga aaaaattcag acttctctgg tataaaggga aagccaaaaa attttacaca       300
     gattttccag atcaggggta ccatccccta acccctacaa tgtggaaggg atacctg          357
//
ID   MER20       repbase; DNA   ; MAM   ; 218 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER20;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-218
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
SQ   Sequence 218 BP; 55 A; 51 C; 64 G; 47 T; 1 other;
     cagtggttct caaccggggg tgattttgcc ccccagggga catttggcaa tgtctggaga        60
     catttttggt tgtcacaact gggggggggg ratgctactg gcatctagtg ggtagaggcc       120
     agggatgctg ctaaacatcc tacaatgcac aggacagccc ccacaacaaa gaattatccg       180
     gcccaaaatg tcgatagtgc caaggttgag aaaccctg                               218
//
ID   CarERV2b2_LTR repbase; DNA   ; MAM   ; 434 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-434
RA   Smit A.F.;
RT   "CarERV2b2_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 bp TSD; 11% subst.
XX
SQ   Sequence 434 BP; 112 A; 143 C; 76 G; 101 T; 2 other;
     tgatgaggga gcagaaggct agctgaggac aaagcacaag ctgacaccct gcaaaccacc        60
     ccccnccccc actcctgggt gggatatgtg tgacattcct ccaggaagct cccaactgtc       120
     ttaatgttaa tgccttgcta gagggaaaaa caaccttaac ttgacaatgg caaggcctcc       180
     agtatcttgt gggtcctctt tagcatatga aagtcctttt gaaacctccc ttttccttac       240
     ctcccccaac tcccaagtat ataatcagcc acccctcaca accccggngc agcagctctt       300
     tctgcccacg ggtcctgtcc ccgtgcttta ataaaaccac cattttgcac caaagacgtc       360
     tcaagaattc tttcttggtc gtcggctccg gacctcaccc caccaaacct cacctacatt       420
     ccaaaactac atca                                                         434
//
ID   MARNA       repbase; DNA   ; MAM   ; 586 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 2)
XX
DE   Human non-autonomous mariner-like element.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MARNA.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   66-521
RA   Jurka J.;
RT   "MARNA..";
RL   Direct Submission to Repbase Update (MAY-1999).
XX
RN   [2]
RP   1-586
RA   Smit A.F.;
RT   "MARNA..";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   Retains a partial protein similarity to mariner transposase.
CC   Present in at least 500 heterogenous copies.
CC   Currently 190 bp terminal inverted repeats, but the ends are
CC   still uncertain as copies have variably truncated termini.
CC   Closest thing to a mammalian fold-back element yet.
XX
SQ   Sequence 586 BP; 174 A; 128 C; 111 G; 165 T; 8 other;
     tgggcacgta tacgaggtgt gactataaag taatgaggct gatttttaaa caaacacacc        60
     agaacttata cgtccaaatg agtgttgtcc ttcaaagtag tcaccctggg aggctgtaca       120
     ctcgttccaa cgatgctgcc antgctcaaa acatttctgg aactnctctt ttggaattgc       180
     cttcagagcc agtttatgag ccacataaga aaatcagtct cattacttta tagtcacacc       240
     tcatttttga ccnaaaatag tattacccag cttgatcacc caccttattc accagacttg       300
     gctctgaatg acttttggct gtttccaaaa atcaaatcca ccctcaaagg atgaagattt       360
     gccaccattg aggatattca aaagaatgtg ccgcaggctc tgaaggcaat tccaaagaga       420
     agttccagaa atgttttgag caatggcaac atcgttggaa taagtgtatn gcctcccaag       480
     gtgactactt tgaaggggac aacactcatt tggatgtata agttctggta tgtttgttwa       540
     aaaatcagtc ncattacttt atagtcacac ctcgtntacg ngccca                      586
//
ID   MLT1I       repbase; DNA   ; MAM   ; 409 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 2)
XX
DE   Mammalian long terminal repeat (MLT1I subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
KW   Long terminal repeat of retrovirus-like MaLR element; MLT1I.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   98-409
RA   Jurka J.;
RT   "MLT1I..";
RL   Direct Submission to Repbase Update (1998).
XX
RN   [2]
RP   1-409
RA   Smit A.F.;
RT   "MLT1I..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1I retrovirus-like MaLR element. 5 bp target site dups.
CC   75-80% similarity over pos 1-210, 280-409 to MLT1H and
CC   MLT1J(1,2).
CC   Average divergence from consensus 26%.
XX
SQ   Sequence 409 BP; 87 A; 97 C; 109 G; 111 T; 5 other;
     tgtggtagtc attagtgctg ttcaccaaat atttctagct ctctnccttc cgggcacatg        60
     gtaggattgt acttcctggc ccccttgaag ttaggtgtgg ccatgtgact tgctttggcc       120
     aatgaaatgt gagcagaagt gacgtgtgtc acttccgggc agaagcttta agagccagtg       180
     tgtgattcnc cangttctct ttccctctgc cacggngacc agcaatgttc cagatggngg       240
     ctgctccgtc agcctgggtc ccggagtgag gatgacatgg agcagagccc cagccgaccc       300
     gcgatggaca tgtagcatga gcaagaaata aacctttgtt gttttaagcc actgagattt       360
     gggggttgtt tgttactgca gcataaccta gcctatcctg actgataca                   409
//
ID   CarLTR1A2A_LTR repbase; DNA   ; MAM   ; 432 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-432
RA   Smit A.F.;
RT   "CarLTR1A2A_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 or 5 bp dups; 10-11% subst;.
XX
SQ   Sequence 432 BP; 126 A; 117 C; 76 G; 113 T; 0 other;
     tgatgtggga aacaaaggca gaaggaaatg tagataaaat taaatgtcct tataacctgc        60
     agcccattga caaatacttg aggcaggcag agtataacgt tcctccagga agctcccaac       120
     tgtcttaatg ttaatgcctt gctagaggga aaaacaacct tggtttgaca atagcaaggc       180
     ctccggtatc ctgtgagtct tctttagcat atgaaaatcc ttttggaact tcccttatct       240
     ttacttcccc caaccccaaa gtatataatc agttgctcct cacaatcccg gggcagcagc       300
     tctttctgcc cacgggtcct gtccccgtgc tttaataaaa ccaccatttt gcaccaaaga       360
     cgtctcaaga attctttctt ggccatcggc tctggacccc accaacctca ccaacattca       420
     aaaactacat ca                                                           432
//
ID   CarLTR1B1_LTR repbase; DNA   ; MAM   ; 579 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-579
RA   Smit A.F.;
RT   "CarLTR1B1_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 or 5 bp dups; 10-11% subst.
XX
SQ   Sequence 579 BP; 163 A; 165 C; 94 G; 157 T; 0 other;
     tgatgtggga aacaaaggca gaagaaaaat tattaaattt ccttactacc tacagcccat        60
     tgacaagtcc ttgaaacagg cagagtgaca ttcctctagg gactcagctg cctcgatgtt       120
     aatactttgc taagggcaaa aggcaatctt agcccgaccc ccaggatcct gtaagtctac       180
     tttaacatat aaaaattcct ttggaaactt cctttatctc tacccccaag atacatgttg       240
     gcaatcatcc cccaagcata tgacccaccg atatacatct gaagggtctc atgactcagg       300
     ttttattaga cggtaataaa tgaccttttc ccaacaatag ctagccccct caaggtcctg       360
     gaaaccttgc ttccaaaatt ccttagagac ttacgctatc cctaaccccc tcccaacttg       420
     aaagtatata atgggccact cctcatgacc ccagtgcagc tctttctgcc cacgggtcct       480
     gtccccgtgc tttaataaaa ccaccttttt gcaccaaaga cgtctcaaga attctttctt       540
     ggccgtcggc ttcgaaccct aacgtctttt cctacatca                              579
//
ID   ERV16_MD_LTR repbase; DNA   ; MAM   ; 478 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV16_MD, a class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV16_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-478
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-478
RA   Gentles A., Jurka J.;
RT   "ERV16_MD, yet another ERV1 retroelement from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 356-356 (2005).
XX
CC   [2] (Consensus)
XX
CC   LTR corresponding to ERV16_MD_I. This consensus was reconstructed
CC   from the June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 478 BP; 131 A; 112 C; 96 G; 138 T; 1 other;
     tgaagaaaca gattgatatc atgggaactt gccctccaga tkaatcccta atgggcccct        60
     tatcccaaga actaagattg acatgtcctt atttatgttt tacaagcata tgttatccca       120
     ggtttcacaa gcatatgtta tctcaggctt cacaaggata tgttatctca ggacttcagg       180
     tttcacaaag atatattgtc tcaggggtca ctgacctgac ctaggtcacc atgaccatat       240
     gttaaagaga aacatctggg tagcaaagac taagattgat gtgtcttccc ttttggcgcc       300
     tgagtgtcaa gacaaccccc ttcccttact ccctctatat aaaccaggtc taggaaaggc       360
     tcggggtctt ccacttcttg tggagaccca ggctatagct tgaattaaag tacctcttgt       420
     gtattgcatt accgtgtgtg tgtcctcctt ggaatctgaa ccagaaccgg acagaaca         478
//
ID   MER2        repbase; DNA   ; MAM   ; 344 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   28-JUN-2000 (Rel. 5.05, Last updated, Version 3)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat;
KW   Interspersed repetitive sequence; MER2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Sheflin L., Celeste A., Woodworth-Gutai M.;
RT   "Recombination in Simian Virus 40-infected cells: Structure of
RT   naturally arising variants ev-2114, ev-2102, and ev-1110..";
RL   J. Biol. Chem 258, 14315-14321 (1983).
XX
RN   [2]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the
RT   human genome..";
RL   Nucleic Acids Res 18(1), 137-141 (1990).
XX
RN   [3]
RP   1-344
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [4]
RP   1-344
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [4] (Consensus)
XX
CC   24 bp terminal inverted repeats, TA target site.
CC   Orientation inverted from [3] after similarities to Tigger2.
XX
SQ   Sequence 344 BP; 98 A; 77 C; 71 G; 98 T; 0 other;
     cagtcgtccc tcggtatccg tgggggattg gttccaggac cccccgcgga taccaaaatc        60
     cacggatgct caagtccctg atataaaatg gcgtagtatt tgcatataac ctacgcacat       120
     cctcccgtat actttaaatc atctctagat tacttataat acctaataca atgtaaatgc       180
     tatgtaaata gttgttatac tgtattgttt agggaataat gacaaggaaa aaagtctgta       240
     catgttcagt acagacgcaa ccatccattt tttttctgaa tattttcgat ccgcggttgg       300
     ttgaatccac ggatgcggaa cccacggata cggagggccg actg                        344
//
ID   ERV23_MD_I  repbase; DNA   ; MAM   ; 8101 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   18-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV23_MD, young class 2 endogenous retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; integrase;
KW   reverse transcriptase; RNaseH; aspartyl protease; gag-pol.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-8101
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-8101
RA   Gentles A., Jurka J.;
RT   "ERV23_MD, a young class 2 endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 371-371 (2005).
XX
CC   [2] (Consensus)
XX
CC   This appears to be a relatively young class 2 ERV that was active
CC   fairly recently; there are several complete copies that are
CC   highly similar (>98%) to the consensus. The ORFs are largely
CC   intact, but there are frameshifts in the consensus. The
CC   corresponding LTR is deposited as ERV23_MD_LTR. This consensus
CC   was reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           445..2535
FT                 /product="ERV23_MD_I_1p"
FT                 /translation="LKMGKTLSKEALFIKELKERIKERNVEVKKRDLLRFF
FT                 SFIEQRCPWLILHGPGIHPLTWDKVGRDLNDFARSGQPIPEDFFTFYGLIR
FT                 DILKEADSSAQVSHLLSLAEDAIEESKKQTEETPELXNMDKKYKTPSQEIP
FT                 ELDNMDKKYKTPSLLDEPINTPSHLPEPLPPSHRPALYPVLYDSNTPETLN
FT                 PAYQTELDEAAAGYHPPDFLKNKPPPYNPLYPSSILPTLPNTNDLKIATAH
FT                 LTKQITDLKQFIDLQHEIGHLTSQLHDLQVATMKPISHSKKPKNNPSKLQK
FT                 PLLALPVVTRRRTTTGTTPEDVDIEEIPDELSQPHQNSPPVSSESDREEGD
FT                 EEANQGVHTTDTTRPHAHPFKRLKFKQIKDLHSAVKNYGLNAPFTLSILES
FT                 LGGEGHLLPSEWTKVIQSVLSRGQFLTWKAEFQERVENQAKSNLTNPQTAN
FT                 WTVDKLIGRGRYAPDTVQLRLPPGLLMQTAHAALAAWRAVPASGAITAPIS
FT                 KILQGPNEPYAQFVARLLETTERVLGQDGTDNPVVRHLAIENANPACKAAL
FT                 RGKSRELDLNGMIRLCNDIDSYDHRINKSISLAIGAAIQATRQNAPRNCFK
FT                 CGMPGHFARECPSNQATPSLPFSPSGVPSRPPPSVCPKCRKGRHWARDCRS
FT                 KTTSNGQNIQPVQGNGMRGSLGSPFPTPLLEPQQAAQAWTSVPPPPEY"
FT   CDS           3275..5941
FT                 /product="ERV23_MD_I_2p"
FT                 /translation="SRLWVTKFFIKATGPPAPQADKITWKSDSPVWVDQWP
FT                 LTSEKVQAAIMLVQEQISLGHLEPSTSPWNTPIFVIKKKAGGWRLLQDLRE
FT                 VNKTMIPMGALQPGLPSPTAIPKGFHKIVIDIKDCFFSIPLHPQDCPRFAF
FT                 SIPIVNQIGPNPRFQWLVLPQGMANSPTLCQKYVAQTIDPIRLRFPSAYII
FT                 HYMDDLLIAAPSPQLTQTIAQTITSALQDRGFKIAPDKVQVQYPFSFLGFR
FT                 LETDHLFTHKVTLNRSTLKTLNDFQKLLGDINWLRPYLALAKADLRPLEDI
FT                 LCGDTDPSSSRSLTPEGEISLQKVEQAIAKQNIGYFSPKDPLYLIIFSTEF
FT                 SPTGLLWQDPSPLIWLHLPLASRKILIPYPDLVAQLIMMGVRLATRHFGRQ
FT                 PDHIVSPYNKEQLRWLQTQNDNWAVLISSYXGTIDNHMPSNKLLQFFTLTP
FT                 FTLTRITQSSPIPGAPTIFVDGSKTGLAAIVMHDYPHTVHTPYQSAQLVEL
FT                 YAALTVFISLPESPFNLYSDSRYVVQSLLRLEATPVIQPTTATFFLFTKIQ
FT                 QAIRARSHPFFIGHIRAHSGLPGPLALGNDLADQYTRLAALAVPTIPSLDP
FT                 ISLATEAHKLHHLNAHTLRLAYKITREQARAIVKSCKNCLTLLPEPHLGVN
FT                 PRGLLPGHLWQMDVTHVPSFAKLKYVHVSIDTFSGFLFASAQSGEATKHVI
FT                 KHMFLAMSVMGRPLTLKTDNGPGYXSRSFKQFCAQLGIKHITGIPYNPQGQ
FT                 GIVERANQTLKNTIFKLKTQETLYPLCGNQTTLLAHALFALNFLTLDTEGR
FT                 SAADRFWHPHTTSNLAQVLWRDPLTGRWNGPDSVLTWGKGSACIFDKREQS
FT                 ARWIPSRLTKPFSPDNHLPPGSTPEKNLPSCLTGNA"
XX
SQ   Sequence 8101 BP; 2051 A; 2514 C; 1569 G; 1959 T; 8 other;
     tctggcgccc aacgtggggc ccgagcgacc accggacgac tgaggaaaag ttcggcgccg        60
     aaatcgagac tacagtaacg ggtagggatc gaatagacga tcctgaggaa gggtaagttg       120
     tcccattcat atctccctct caaaccccat tgtgtgaatg gtcgaatgta tgtgtgtttt       180
     gatggcaacg gaataacagt ccccttatat atacgagtaa tagggcgccc cttyggggaa       240
     cctggccggg gcttatacgg cacgcctacg ctcaaatata agggacccct ctttgaccaa       300
     aggggagagg ccaattcgtg gagagttgat ctcgcggttc gactgccgtt gacctgtttc       360
     tgagtgttga cctggaatta ctgcggttcc gtccytgcgc gagcacggcg gccaggaaac       420
     cagggaagcg aracttatgt gtgactgaaa atggggaaaa cactgtctaa ggaagctctg       480
     tttataaaag aattaaaaga aagaattaaa gagcgcaatg tagaagttaa gaaaagagat       540
     ctgttgcgct tcttctcctt cattgaacaa cgctgcccgt ggctcattct ccatggccct       600
     ggcattcacc ccctaacttg ggataaggtt ggccgagacc ttaatgattt tgcacgctca       660
     ggtcagccca tccctgagga tttctttacc ttttatggcc tgattcggga catccttaaa       720
     gaggctgatt ccagcgcaca ggtctcccac ctcctcagcc ttgctgagga cgctattgag       780
     gaaagtaaaa aacagactga agaaacccct gaattagrca acatggayaa aaaatacaaa       840
     accccgtctc aagaaatccc tgaattagac aacatggata aaaaatacaa aaccccgtct       900
     ctcttagacg aacctattaa caccccctca cacttaccag aaccactgcc tccctcccac       960
     agacccgctc tctatcctgt cctttacgat agcaatacac cagagaccct caatcccgca      1020
     taccagactg aactggatga ggcggcagcc ggataccacc ctccagactt ccttaaaaac      1080
     aagccccctc cctacaatcc gctttaccct tcctcgattt taccaactct tcccaataca      1140
     aatgacctaa agatagccac tgctcattta actaagcaaa tcactgatct caaacaattt      1200
     atagacttac aacatgagat cggccactta acaagccaat tacatgacct tcaggtcgcc      1260
     accatgaaac caatctcaca ttcaaaaaaa cctaaaaaca acccctccaa actacaaaag      1320
     cccctcctgg ccctcccggt agttaccagg cgtaggacca ccaccggtac caccccggag      1380
     gatgtagaca tagaggagat ccctgacgaa ctgtcccaac cccaccaaaa ttcacccccc      1440
     gtttcctctg aatctgacag agaggagggg gatgaagaag cgaatcaagg ggtccatacc      1500
     accgatacaa ctcggcccca tgcccaccca tttaaaagac ttaaattcaa acagattaag      1560
     gacctccatt cagcagtaaa aaactatggc ctcaatgctc cctttaccct ttctatcttg      1620
     gaaagtctcg ggggagaagg gcacttactc ccctcagaat ggactaaggt tatacaatct      1680
     gtcttgtcta gaggccagtt cttaacctgg aaggcagagt ttcaggaaag ggtagaaaat      1740
     caagcaaaat caaatctcac aaacccccaa acagccaatt ggacagtaga caaactcatc      1800
     ggtcgtggtc gttatgcccc tgacaccgtg caattgagat tgcctcctgg cctcctcatg      1860
     caaactgccc acgccgcctt agccgcatgg cgcgctgtcc ctgcctccgg ggccatcacc      1920
     gccccgatct ctaaaatcct ccagggacca aacgagccct atgctcaatt tgtagccaga      1980
     ctcttagaga caacagaaag ggtcttggga caggacggta ccgataaccc agtggttaga      2040
     cacctggcca ttgaaaacgc caaccctgcc tgtaaggccg cccttagagg aaaatctaga      2100
     gagcttgatc tgaacggcat gatccgctta tgtaatgata ttgactctta tgaccacaga      2160
     attaacaaat ctatctcctt agctattgga gcagccattc aagccacccg acagaacgct      2220
     ccccgtaatt gttttaagtg cggcatgccc ggacattttg ctcgtgaatg tccctccaat      2280
     caggctaccc ctagtttacc tttcagcccc tcgggtgtgc cttcgagacc gcccccaagc      2340
     gtctgtccga aatgtcggaa agggcgtcac tgggcccgcg actgccgctc caaaactacc      2400
     tcaaatggac aaaatattca acctgtccag ggaaacggga tgcggggctc cctcgggagc      2460
     cccttcccca cgcccttgct cgagccacaa caggcagcgc aggcttggac ctctgttcct      2520
     cctccaccag aatattaacc cctgaggatg gccctgaggt catttccacc ggtgtcactg      2580
     gtccaccacc ccctggtatg ttcttcttaa tcatcggaag ggcactcact actctacagg      2640
     gagttgtggt ccaccccaca ttagtggaca atgactatac aggagaaata aagctcattg      2700
     ttgagtctcc ccatggcccg gttactatcc ctgctggcca ccgactagcc caagcccttc      2760
     cccttcccat ggtgggtgac ttccctacca ttgaacaaac aaggggccct tcgtccccag      2820
     gatcgtcaaa catctattgg gcacaacaaa tcactgaatc ccgtcccacc ctccagttgt      2880
     ctcttgacgg gaagaaattt atcggactac ttgacaccgg ggccgattcc acggtcattt      2940
     cccacaaaca ctggccttgt gcctggcccc ttcagccctc taccactcat ttgtccggca      3000
     tagggcaagt caatcacaca cttcagagtt caaagttcct tacttggaga gatgctgagg      3060
     gtaacaccgg cacgactcga ccctatatag tcaaagggct ccccgttaac ctctggggca      3120
     gagatattct cgctcaaatg cgactcctca tggtgagccc cagcgaccct gtcacacaaa      3180
     tgatgcttaa atctggcttc ctcccaggaa aagggcttgg caaaaatgaa cagggcgatc      3240
     ctcaacctat ctcccttaca cccaatagag ataaagcagg ctttgggtca caaaattttt      3300
     cataaaggcc accggtcctc ctgcacccca ggcagataag ataacttgga agtctgattc      3360
     ccctgtctgg gtcgaccagt ggcccctcac ctctgaaaag gtccaggccg ccatcatgct      3420
     ggtgcaggag caaatctctt tgggccacct cgagccctcc acctcaccat ggaacacacc      3480
     tatttttgtt atcaaaaaga aggctggagg gtggagacta ctacaagatc tacgggaagt      3540
     taataaaacc atgattccca tgggcgcctt acaacccgga ctcccatcac ctacagctat      3600
     ccctaaggga tttcacaaaa tagttataga tataaaggac tgttttttct ccattcccct      3660
     tcaccctcag gattgccctc gattcgcctt ctctatcccc atagtcaatc aaattggccc      3720
     caatccccga ttccaatggt tagttttgcc tcaaggaatg gccaattctc ctaccctatg      3780
     tcaaaagtat gttgctcaga caatagatcc catcaggctt cgattccctt ccgcatatat      3840
     tatccattat atggatgatc ttctcatagc agctccctcc cctcaactga cccagaccat      3900
     cgctcaaacc attacttcag ccctacagga cagaggcttt aaaattgccc ccgataaggt      3960
     acaggtccaa tatccctttt cttttctcgg attccgtctc gagactgatc atctctttac      4020
     acacaaagtc acgcttaatc gttccaccct aaaaacactt aacgattttc aaaaacttct      4080
     aggggatatt aattggcttc gtccttatct cgcccttgca aaagcagacc tccgccccct      4140
     agaagatatt ctatgcggag ataccgaccc ctcttcatca cgatcactaa cacctgaagg      4200
     agaaatctcc ttacaaaaag ttgaacaggc aattgccaaa cagaacatcg gttacttctc      4260
     ccctaaggat cccctctatt taatcatctt ttccactgaa ttctctccca caggtctcct      4320
     atggcaggac ccttctcccc tcatttggct acaccttccc ctagcctcta ggaagatcct      4380
     gatcccctac cctgacctgg ttgctcagct tattatgatg ggtgtccgcc tggccactcg      4440
     ccacttcggc cgccagcccg atcatattgt ttccccgtat aataaagagc aactacgatg      4500
     gctgcaaaca cagaatgata attgggccgt ccttatctca tcctatmaag gcactattga      4560
     caatcacatg cccagtaata aactcttaca attctttacc cttaccccct tcaccttaac      4620
     ccgtattacg cagtcatctc ccattcccgg agcgcccacg attttcgtgg acggctcgaa      4680
     aacaggcctc gcggccattg ttatgcatga ttatccccat actgtccaca ctccttatca      4740
     atctgcacaa ctggttgaac tctatgcagc actcactgtt tttatctctc tgcctgaatc      4800
     ccccttcaat ctatactctg acagtcgata tgtcgttcag tccctactac ggcttgaggc      4860
     tactcctgtt attcaaccca caacagccac ctttttctta ttcaccaaaa tacagcaagc      4920
     catcagagca cggtcccacc ccttctttat aggycacata cgtgctcatt caggtctccc      4980
     aggccccttg gcattaggaa acgaccttgc agatcaatat acccgcttgg ccgctctggc      5040
     tgtacctaca atcccttcgc tagaccctat ttcccttgct actgaagccc acaaactgca      5100
     ccaccttaac gcccatactc ttcgcttagc ctacaaaatc actagagagc aagccagagc      5160
     tatagtgaaa agctgcaaaa attgccttac gctgttacct gaacctcacc ttggagtcaa      5220
     ccctcgtggc ctcctccctg gccacctgtg gcagatggac gttactcatg ttccctcctt      5280
     tgctaaattg aaatatgttc atgtttccat tgacaccttt agtgggtttc tttttgcctc      5340
     ggcacaatct ggcgaggcca ccaaacatgt catcaaacat atgtttctcg ccatgtcagt      5400
     catgggaaga ccattgaccc ttaagacaga caatggtcct ggctacrcaa gccgttcctt      5460
     taaacagttc tgtgctcaat taggcataaa acatatcact ggcatcccct acaatcccca      5520
     agggcaaggt attgtagaaa gagcaaacca aacactgaaa aataccattt tcaaactaaa      5580
     aactcaggag accctctacc ccttgtgcgg caaccaaacc accttgctgg cacatgccct      5640
     ttttgccctt aacttcctca ccctggatac ggagggccgc tctgccgcgg accgtttttg      5700
     gcacccacac accacctcta acctcgctca ggtcctatgg cgtgatcccc tcacgggccg      5760
     ttggaacggc cctgactctg ttctgacctg gggcaaaggc tcagcctgca ttttcgacaa      5820
     aagggagcag tctgctcgct ggatcccctc acgtctaaca aaacccttca gcccagataa      5880
     tcaccttccc ccagggtcta cccctgagaa aaatctcccc tcttgtctta caggtaatgc      5940
     gtgaaaccca tgatccatcc tgccttgtac tgcgaacact gttggctgcc tccttgttct      6000
     tcgcgatcct cggccttctt gctgccctga tagaatccat ccacatcacc ctctacattc      6060
     gcagtctgaa cgacccttga acattcgcga ccattatggg ccttcaaatt ttattgtttc      6120
     tttccctact caccccccct atgagtgcac aacaccactc ccatcgtcca tggaaatgga      6180
     cccttagcag ctgggacagt agctctatta tccagactac aaccacctct ggagcaccca      6240
     gcttcacctt tctcccctgc acaattatca acaggacgga ccatgcctcc ggaaaaacgc      6300
     ggctactcac acttcacgtt tattacattt gcccttcttc caatcctgga aagcattatt      6360
     gtaatcgccc aaatgtatac tattgctcct attggggatg tgagactcgc tctaccggat      6420
     ggactccccc aattatcctt cctttccttt cattggggac cctcgggttg taagccccga      6480
     tcacagctcg ggcgctttat cgcggagggt tctaaaggac atggattgac tgttcatatc      6540
     tcaaccttac agtactacaa cccaccgatg acagctggct cctaggaaga acttggggtc      6600
     tccgctccta ccaacggaga tgaccccgga ggactgtttt tcatcaagaa agaactccct      6660
     cagaaaaccc ccccctccat tcagggccca aacaaggccc tccgacccgc aaaccccgac      6720
     acccaccccc ccccacaccg acatccgctc cccaacttag accgtctccc tcgtcccccg      6780
     tccccttccc ttcaccccct cctcctcccc tgttaccccc tatccctaag gagaaaccga      6840
     taatccctta cccgtacctc cctctcctgc aagcgtcttt ttccgcgctt aaccactcct      6900
     tcccaaactt cacgaccaat tgctggcttt gtttagtcgc gtccccgccc tatcttgaag      6960
     cttatgccct aaccgataat aatcttacgt gctctaaggt tgacaacccc tctgcttgtc      7020
     actgggataa tgatgatccc tcccttacta tacctatcat cggaggcaac ggcacttgca      7080
     ttggcaaaaa tgctacactt aatccttatt gtgctgtgtc cttcgtgact aggaatgact      7140
     gcaaatttta tattccccct gtaatacccg tggctttgcg cgaaagcagg ccttcaagcc      7200
     tgttgggctt ccaccgcccc agaggacgtg tgcattctgg tcaccattgt accacgtgtc      7260
     acctttaggc ccgaccagga cttcctcccc ctgtgggaac gactccaaaa ccccagatgg      7320
     aaaagagaac cggtaccctc gccgtcacgg ttgccgctct tcttggcgct gccggcgcag      7380
     ggaccggcat agccgctcta acttcccaac acatatccca caatcatcta cgggcagcag      7440
     tagatgaaga cattgcccgc ttagaatcca ccataaattt cttggaaaag tcccatgctt      7500
     cccttgctga agtagcctta caaaatagac gaggattaga cctcctcttc ctccgcgaag      7560
     ggggactctg tgccgccctc ggagaagaat gttgcttcta tgctaaccac tctggcgtca      7620
     ttagggactc tctagcccaa ctcaggaaag agcttgaaca gaggcgcaaa gatagggaaa      7680
     cagacggccc ttggtatgca cagtttctgc ctagttctcc atggttctct gcaatcctct      7740
     ctaccctcct tacccccctc atagttttta tccttgcttt gacttttggc ccttggattt      7800
     tcaaaactat cacacggctg gtcactcgct ccattgaatc atccttgaag gccttcccta      7860
     tggtacagta ccaccgccta gagacggttg gccacacctc cccctccact gagcaataca      7920
     accaactcca cttctcggga cggtaatcca acgacgggaa tattgcgggt cccttgccct      7980
     tgcgtggagg ctattaggga aataccccgc atagcctaag acaggagccg cctccgaaag      8040
     ggttcttcaa gacgggctta agaatgttgt gatagttctg caaatccttt ttctctcccc      8100
     t                                                                      8101
//
ID   ERV2_MD_I   repbase; DNA   ; MAM   ; 7557 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV2_MD, a young class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV2_MD_I;
KW   RNaseH; aspartyl protease; integrase; reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-7557
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-7557
RA   Gentles A., Jurka J.;
RT   "ERV2_MD, a young class 1 endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 377-377 (2005).
XX
CC   [2] (Consensus)
XX
CC   Potentially still active recently class 1 endogenous retrovirus;
CC   there are over 100 full-length copies in the genome which are
CC   >99% similar to this consensus. Average similarity of copies used
CC   in reconstruction, to this consensus, is 99.3%. The corresponding
CC   968 bp LTR is deposited as ERV2_MD_LTR. The sequence has two
CC   ORFs. The first shows similarity to murine leukemia virus
CC   gag-pol; while the second encodes putative integrase, reverse
CC   transcriptase, and retroviral aspartyl protease domains. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV2_MD_I_1p"
FT                 /translation="LSGLRASPRGRRSWVQIGPQILPSCVTLIDRKQLFLN
FT                 LSNRTLKSWLEELFLNILSLKEQLPGLKKKKTLWKVCCFALLPTCFVKLQN
FT                 IHIKMSTTFFDNYMAAEEVGALRNEGYLQIFILIGTVIFVLLNTIFRDEKI
FT                 KNIEDKIKQNEDKIKQNEDKIKQNEDKIKQNEDKIENIEDKIENVEDKIEK
FT                 NEDKIENIEDKIENIEDKIEKIEDTIEKIEDTIEKIEDKIGNIENKIEKLE
FT                 DKIGNIENKIGNIEDKMGDMEDKIGKIEDKMQAQLEDLKCFLQDQWANTHS
FT                 TRNRPVSEPLNEEISFPEIEMENTFPIAQLTDCFSRAVQILSEFNPQNPSP
FT                 AIPASHVPSPTENQIPMQGRSCPPRETCPCQTDPQVQNSTRGLFPLREVPE
FT                 IGRNGDVVTLRHRIPFTPQEINEFTRNIPTYEQDPFLVTKKMGDIFFQYNP
FT                 SYKDVESLLQAFLSEREKNKIIAHVNKTRGRNAAHWPSQDPEWDYNNPEDY
FT                 LQLYRCREAILTAMKECADSTDKWMELEKIKQKENETPSRFMDRIIEFGDR
FT                 YLDWDLNKENSLRQVRRIFVNNSCKVIKNYFKTQCPRWSDMDLEELRKTAI
FT                 YVFKGNEEKEKENNDDMEEMKKKMRCVIDRITKLESGHDNEPTTIAPLQKS
FT                 NYQSITCHFCEKKGHKMMECRTFLKMFGRNTQFNNGFRNNNYRNYDNGYRN
FT                 QNSRNYNNDYGNNYNEYRNKNFRNQNYRNRNWEFNDNAQIEENFNDNTQQY
FT                 MRNGARPKITRGTNDPQRGALQGGAQGISQTQ"
FT   CDS           0..0
FT                 /product="ERV2_MD_I_2p"
FT                 /translation="WCPGGAGAQESEDTTFDFPDPDVLLPVVPIHCPPHTN
FT                 EPHVTLKVGNTYYDCLLDTGASWSVLKRTPDLQCYSIGSENVMGVSGITQR
FT                 VKRLPPRMVSVGPLEVQHSFLLMPDSPLNLLGRDLLCKLRATITCSPDGSL
FT                 SLEVPEESLNLLPVLLSENQEAKEPSIFEIPKDIPESLWATSSSDVGLLKS
FT                 AVPVQIKTKSSPPPSIPQYPLSKEAIEGITPVINSLIEQGIIIPCKSEYNT
FT                 PILPIKKPKKGPDGKHIYRFVQDLRAVNNHVIKRHSVVSNIHTIISSIPST
FT                 ATYFTVVDLCSAFFSIPIHENSRHIFAFTWKGSQYTWCRLPQGYVESPSLF
FT                 EQILSQDTDNITFKNSKLIKYVDDLLLASTDAETCQEDSKHLLLELHKRGH
FT                 KISKDKVQWCLQKVEYLGFILTAGARYISPKRIENIQKLSAPTTKKQLRAI
FT                 LGATGFCRQWIPCYGEITKPLIALTKDSVPEPLKLEPEHLSALTDLKKAIM
FT                 SAPALGIPDYNKPFTLYVHERRGVASGVLTQTLGPSQRPIAYYSAQLDPVA
FT                 AGAPPCLRGVAATALLVTKTVDLVLGCPLTIMCPHEIEALLVKHRTQAFSD
FT                 QRITRYEITLLNSENITLKRCSTLNPATLLPDLPTSGEPLHNCETLVSMAE
FT                 KPRDNLLDTPLDNADLILFTDGSSFMRDGIRYTGAAVVSEFATEWSASLPS
FT                 NISAQGAELIALKQACIIAKDKKATIYTDSRYAFGICHSVGMLWLQRGFLT
FT                 SAGKSIANAEIINEVLSALKLPKALAVVHCSAHTGGSDPVSRGNDRADAAA
FT                 KLAAIEGPGLILTLTTTDNLNLSLSYNEKEVEKWKQKFKAKQINGVWVSPE
FT                 GKPLLPRSFYNQICQSIHKNGHFGTQGIVDSVKRVWIAPGITTVASKVCSA
FT                 CPICQAYNQHAYRGKAFGGRPLAYTPFEHLQIDFITMPKAGRYKFCLVIVD
FT                 QLTRWPEAFPTTRATADFVAKILLKEIIPRFGLPARIDSDRGSHFTDSVLN
FT                 QIYSCLGITPKFHVPYHPQSSGQVERMNKELKTMIGKLCTETHLKWPEILP
FT                 LALFYLRSRPRGDLHISPFEMLFGHPPIQAKPFSPAYTSLLGGDITIASYI
FT                 QELQHKLRELHESGAAVQAGPLDFSLHDLNPGDKVYIKNFKRTGATEPSWE
FT                 GPFQILLTTPTSIKIGERDSWIHCSHVKKASSAETD"
XX
SQ   Sequence 7557 BP; 2578 A; 1419 C; 1371 G; 2189 T; 0 other;
     ttgtggctga ccacacggga gtctaaagaa tcctctcaat aaaacttttt ccttgccttt        60
     ttactatact gtttcaccac ttagtccttt ttttttaaaa aaaaaaaaac ttggcttaaa       120
     gacacagctg ctagaacacg tgagtataaa aaactttttc tcttttctcc ttaagttaaa       180
     ttggaatcag cagttttttc tttttcttcc ctttaatctt aagggacagc tgggtagctc       240
     agcggattga gagccagccc tagaggcaga aggtcctggg ttcaaatcgg acctcagata       300
     cttcccagct gtgtgactct gatagacaga aaacagctgt ttttaaatct cagcaacagg       360
     actctaaagt cctggctgga agaactgttt ctaaatatcc tttcccttaa ggaacaactt       420
     cctggattaa aaaaaaaaaa aaccctgtgg aaagtttgtt gctttgccct gctccccacg       480
     tgttttgtga aattacaaaa tatacatata aaaatgagta ctacattctt tgacaattat       540
     atggcagctg aagaagtagg ggcattgagg aatgaaggat acctccaaat ttttatatta       600
     ataggtactg tcatttttgt actcctcaat actatattta gagatgaaaa aataaaaaat       660
     attgaggata aaataaaaca aaatgaggat aaaataaaac aaaatgagga taaaataaaa       720
     caaaatgagg ataaaataaa acaaaatgag gataaaatag aaaatattga ggataaaata       780
     gaaaatgttg aggataaaat agaaaaaaat gaggataaaa tagaaaatat tgaggataaa       840
     atagaaaata ttgaggataa aatagaaaaa attgaggata caatagaaaa aattgaggat       900
     acaatagaaa aaattgagga taaaatagga aatattgaga ataaaataga aaaacttgag       960
     gataaaatag gaaatattga gaataaaata ggaaatattg aggataaaat gggagatatg      1020
     gaagataaaa taggaaaaat tgaggataaa atgcaagccc aattagaaga tctaaaatgt      1080
     ttcttacagg atcaatgggc aaacacccac tctaccagaa acagacctgt ttctgaacct      1140
     ttgaatgagg aaatttcctt ccctgaaata gagatggaaa acaccttccc tatagcccag      1200
     ttaacagact gcttctctcg tgcagtgcaa atcttgtctg aatttaatcc ccaaaaccct      1260
     tcccctgcaa tcccagcttc tcatgttcct tctcctacag aaaaccaaat tccaatgcaa      1320
     gggagatctt gtcctcctag agaaacctgt ccttgtcaaa ctgacccaca ggtgcaaaat      1380
     tcaactagag gcctgtttcc tctaagagaa gtacctgaaa taggacgaaa tggggatgtg      1440
     gtgactttaa gacataggat accgtttact ccccaagaaa taaatgaatt tacacgaaat      1500
     atccccacat atgaacaaga tccttttcta gtaacaaaaa agatgggaga catatttttt      1560
     caatataatc cgtcttacaa ggacgttgag agcttactac aggctttttt aagtgaacgt      1620
     gaaaaaaata aaataattgc tcatgtcaac aaaacccggg ggcgtaatgc agcacattgg      1680
     ccatctcagg atcccgaatg ggactataat aatcctgagg actatctaca actataccgt      1740
     tgtagagagg ccatcctcac ggccatgaag gaatgtgcgg acagtacaga taagtggatg      1800
     gaactggaaa aaattaagca aaaggaaaac gaaacaccct ccagatttat ggacagaatt      1860
     atcgagtttg gggacagata cttagattgg gacttaaata aagagaatag tttaagacaa      1920
     gttagaagaa tctttgtaaa taattcttgc aaagtaatta aaaattattt taaaacacaa      1980
     tgcccaagat ggtcagatat ggaccttgaa gaattgcgaa aaacagctat atatgttttt      2040
     aagggaaacg aagaaaagga gaaagagaat aatgatgaca tggaggaaat gaagaaaaaa      2100
     atgagatgtg taatagatag gataactaaa ttagaaagtg ggcatgataa tgaaccaacg      2160
     acaattgccc ctctccagaa atccaattat caatccatta cttgccactt ctgtgagaag      2220
     aagggccaca aaatgatgga atgtagaacc tttcttaaga tgtttggaag gaatacacag      2280
     tttaataatg gttttagaaa taataactat agaaattatg ataatggtta tagaaaccag      2340
     aattctagaa attataataa tgactatgga aataactata atgaatatag aaataagaac      2400
     tttagaaacc agaattatag aaataggaat tgggaattta atgacaatgc tcaaattgaa      2460
     gaaaatttta atgataatac tcaacaatat atgagaaatg gcgctcgtcc aaaaattact      2520
     cgaggtacta atgaccctca gagaggtgcc cttcaggggg gtgcccaagg aatatcccaa      2580
     acacaatgat ggtgcccggg gggggctggg gcacaggaat cagaggatac aacctttgat      2640
     ttcccagacc ctgatgtcct actacccgtt gtccctatcc actgccctcc ccatactaat      2700
     gaaccccatg ttaccttaaa agtgggtaac acctattatg attgtctatt agacaccgga      2760
     gcttcctggt ctgtattaaa gagaacacct gatttacaat gttattctat tggctcagag      2820
     aatgtaatgg gagtatcagg aataacccaa agagttaaaa gacttcctcc tagaatggtg      2880
     tctgtaggac ccctagaggt acaacactcc ttccttttga tgcctgactc ccctttaaat      2940
     ttgctgggga gggaccttct atgcaaactc agagccacaa taacctgctc cccagatggc      3000
     tcattatcat tagaagtacc agaggaatct ttaaatttac tccctgtact tctctcggaa      3060
     aaccaggagg caaaagaacc ttccattttt gaaataccta aagatatacc ggagtctctt      3120
     tgggccacat cttcttctga tgtaggctta cttaaatctg ctgttcctgt gcagataaaa      3180
     actaaatcta gcccacctcc ttctatccct cagtatcccc tctcaaagga ggcaattgag      3240
     ggtattacac cagttattaa ctcattaata gaacagggaa taataatccc ttgcaaatct      3300
     gaatacaaca cgcccatcct gccaattaaa aaaccaaaaa aaggacccga tggcaagcac      3360
     atctatagat tcgtacagga tctaagggca gtgaataatc acgttataaa gagacactcc      3420
     gtagtttcta acatacatac tattatttca tctattccta gcacagctac atactttaca      3480
     gtagtagact tgtgttcagc tttcttttcc ataccaatac atgaaaactc caggcatatt      3540
     tttgctttca cctggaaggg ctcacaatat acctggtgtc ggctgccaca gggttatgtc      3600
     gaaagtccga gcttatttga gcaaattttg agccaagaca cagacaatat aacatttaaa      3660
     aatagcaaat taatcaaata tgtagatgat ctactcttgg cttcaacaga tgcagaaaca      3720
     tgtcaagaag atagcaaaca ccttcttttg gaattgcaca aaagaggaca taaaatctct      3780
     aaggataaag ttcaatggtg tctccaaaaa gtagaatatt tgggattcat cttgactgcg      3840
     ggtgctcgtt atatttctcc aaaacgaatt gagaacattc aaaaattgag tgctcctacc      3900
     actaagaaac agctgagagc aattttagga gcaacagggt tttgtagaca atggattcct      3960
     tgctatgggg aaatcactaa accccttata gcattaacaa aggattcggt tcctgaaccc      4020
     ctcaaattag agcctgaaca cttgtcagct ctaacagatc tgaaaaaggc tatcatgtct      4080
     gcccctgctc taggcatccc agattacaac aagccattta ctttatatgt gcatgagcga      4140
     agaggagtag cctctggtgt gttaactcag actttgggac cttctcagcg cccaattgct      4200
     tattattctg cccaactaga cccagtagca gcaggagcac caccatgcct tagaggagta      4260
     gctgctacag ccttactagt aacaaaaacc gttgatttag tattgggatg tccattaaca      4320
     ataatgtgcc cacatgagat tgaagcatta ttggtaaaac atagaacaca ggcattctcg      4380
     gatcagagaa ttacaaggta tgaaataacc ttattaaata gtgaaaatat taccttgaaa      4440
     cgctgttcaa ctcttaaccc tgccaccttg cttccagatt tacccacttc aggagaacca      4500
     ctacataact gtgaaacatt agtgtccatg gcagaaaagc ctcgagataa tctcttggac      4560
     actcccttag acaatgcaga tctgatttta tttaccgatg gttcctcttt tatgagggat      4620
     ggcatacgtt acactggagc tgccgtagtc tcagaatttg ccactgaatg gtcagcttca      4680
     ctaccttcta acattagcgc tcaaggagca gaactcatag ctctaaaaca agcttgtata      4740
     attgccaagg ataaaaaggc aacaatttat acggattcta gatatgcttt cggcatttgt      4800
     cactcagtcg ggatgctatg gctccaaaga ggatttttaa cctcagctgg aaaatccata      4860
     gctaatgcag aaattattaa tgaagttctt tctgctctca aactgcctaa agccctagct      4920
     gtagttcatt gctctgccca tacaggtggc tctgaccctg tctctagagg aaatgaccga      4980
     gcagatgccg ctgcaaaact agcagccata gaaggacctg gattaatttt aacattaaca      5040
     accactgata atttaaattt atcactctcc tataatgaaa aggaagtgga aaaatggaaa      5100
     caaaaattta aagcaaaaca aattaatgga gtatgggtgt cacctgaagg aaaacccctg      5160
     ctccctagaa gtttctataa ccaaatttgc caatctattc ataaaaatgg tcattttggc      5220
     acccagggca tcgtggactc tgtcaagaga gtatggatag cccctggtat aactactgta      5280
     gcctctaaag tatgttcagc ctgccctatt tgccaggcat ataaccaaca tgcatatcgt      5340
     ggaaaagcct ttgggggacg tcctctggct tacacacctt ttgaacatct acagatagat      5400
     ttcataacaa tgccaaaggc tggacgttat aaattttgtc tagtaattgt agatcaacta      5460
     accagatggc cggaagcatt tcctacgacc cgagccacag cagattttgt tgcaaagata      5520
     cttttaaaag aaattattcc tcgttttggc ctaccagcac gtattgactc cgatagaggg      5580
     agtcatttta ccgattctgt cttaaatcaa atatattctt gcttggggat aactccaaaa      5640
     ttccatgttc catatcaccc ccagagctca ggccaagtgg agaggatgaa taaagaactt      5700
     aagactatga ttggcaaatt atgcactgag acccatttaa aatggcctga aattctccct      5760
     ctggccctat tttatcttag aagcaggcct agaggagact tacatatttc accatttgag      5820
     atgctttttg gacatccgcc tatacaggct aagcctttct ccccggctta tacatcgcta      5880
     ttagggggag atattactat tgcttcctat atacaggagt tacagcacaa actacgtgaa      5940
     cttcatgaat ccggagctgc agtacaagct ggaccattag acttttctct gcatgacctg      6000
     aacccaggag ataaagttta tatcaagaat ttcaagcgaa ctggagcaac tgaaccttca      6060
     tgggaaggac cattccaaat attattaact actccaacat ctataaagat tggagaaaga      6120
     gactcttgga ttcactgctc acatgtgaag aaagcatctt ctgctgagac tgattgactc      6180
     tatcctatca tatgaattgt gactctatct tatcataaga attggagata ataatccata      6240
     gacaaatgga tgctggtttt tttttcaaga atatattgaa ttactgattt ttttccttat      6300
     tttttcttat ttcttttctt ttattttttg atcagaatat ttgatttttt ttctcatttt      6360
     ttgtactgaa ggtacacata attaatatta atattatttt tttccctgca gtaatacaag      6420
     ttaatatata tactcttgct ataatatcaa tatatgccta aaagctttaa actatgggaa      6480
     cctgccattt attgataaaa tattatagga ctgtgattaa tgtttgtgtc tgattccagg      6540
     aaaagggata aaaacaagga gcacagacta aacctgaata gtgccaatag agcacacaag      6600
     aaatattaaa gtgagactcg aggttgcgac gcttaactta tgtttaagtc gtaggacttc      6660
     cttgtatcta cactcttttc gaagtactca aacaagtaca aagcttgact atcatgctgg      6720
     ctccctatat ctctgaagga aaaaaatcag acaagggaat gacatttccc catcaaaata      6780
     gaattctaat tcttttcttc ttatattatg gcaacttcct gtagtcttgg ctacaaatgg      6840
     ctaagtgaaa tattactgca ttctgtccta catacttgtg ggatagaaat tactttaaac      6900
     tggacctata caaggtctat tttgaatttt tcttatgttt ttgattattt ttctattctt      6960
     ttgataattg acacatacac ccccataact gaacattgca ttctgagcta aacttgatat      7020
     ttttttttta atacttactt caggggggat tgtattttaa tttaaaatct aagaattttt      7080
     gaattttttt tgtttgagat tgtattttta taaaaatcca agacttttgt ttaagatttt      7140
     acttttataa aaaattcaaa gattttgatt ttgttcgaga aaagatcttc aagaaagaag      7200
     cttgaaactt ttatatccag agaatgaact gttgcagaaa gatgccaaaa acctacactt      7260
     catcaagaag atcaagaatg aactttggat gtgattgatt ggactgaact tttgattgaa      7320
     catttattgt aacatttatg ccaaaaggga ctgcccctaa tttggctttc tgtcaatgcg      7380
     cctagcaaac attggttttg ctttcttttc ttttctattt cctctctcac tattctaatt      7440
     tctcttagaa aattgaatat tgtgtatatc tttagttaga agtgaattta gaactacaaa      7500
     atgattatgt taaatgatca atggggagac tagtctccca atgatcatca gggggga         7557
//
ID   BOV2        repbase; DNA   ; MAM   ; 560 BP.
XX
AC   X64125;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   B.taurus DNA for SINE sequence Bov-2.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; BOV2; BTBOV2;
KW   Short interspersed repeat.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-560
RA   Lenstra A.J.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (10-JAN-1992). J.A.
RL   Lenstra, Inst. of Infectious Diseases and Immun., School of
RL   Veterinary Medicine, University of Utrecht, Yalelaan 1, 3584
RL   Utrecht, THE NETHERLANDS.
XX
RN   [2]
RP   1-560
RA   Lenstra A.J., van Boxtel A.J., Zwaagstra A.K., Schwerin M.;
RT   "Short interspersed nuclear element (SINE) sequences of the
RT   Bovidae.";
RL   Anim. Genet 24(1), 33-39 (1993).
XX
DR   GenBank; X64125; Positions       1     560.
XX
SQ   Sequence 560 BP; 169 A; 99 C; 164 G; 128 T; 0 other;
     ctgcagccat gaaattaaaa gacgcttact ccttggaagg aaagttatga ccaacctaga        60
     tagcatatta aaaagcagag acattacttt gccaacaaag gtccatctag tcaaggctat       120
     ggtttttcca gtagtcatgt atggatgtga gagttggact ataaagaaag ctgagcgctg       180
     aagaattgat gcttttgaac tgtggtgttg gagaagactc ttgagagtcc cttggactgc       240
     aaggagatcc aaccagtcaa tcctaaagga gatcagtcct gggtattcat tggaaggact       300
     gatgctgaag ctgaaactcc agtactttgg ccacctgatg tgaagagctg actcattgga       360
     aaagaccctg atgctgggaa agattgaggg caggaggaga aggggacgac agaggatgag       420
     atggttggat ggcatcaccg actcaatgga catgagtttg agtaaactcc aggagttggt       480
     gatggacagg gaggcctggc gtgctgcagt ccatggggtc gaaagagtcg gacatgactg       540
     agcgactgaa ctgaactgaa                                                   560
//
ID   SSRS1       repbase; DNA   ; MAM   ; 3832 BP.
XX
AC   X12696;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Pig DNA for male-specific repeat 1.
XX
KW   Male-specific DNA; SSRS1; Repetitive sequence.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-3832
RA   McGraw A.R.;
RT   "SSRS1.";
RL   Direct Submission to Genbank (24-AUG-1988)McGraw R.A., University
RL   of Georgia, Riverbend Research Labs, Athens, Georgia, 30602..
XX
RN   [2]
RP   1-3832
RA   McGraw A.R., Jacobson J.R., Akamatsu M.;
RT   "A male specific repeated DNA sequence in the domestic pig.";
RL   Nucleic Acids Res 16, 10389-10389 (1988).
XX
DR   GenBank; X12696; Positions       1    3832.
XX
SQ   Sequence 3832 BP; 986 A; 832 C; 1032 G; 982 T; 0 other;
     gaattctcat taggtccctt atgtgtaggt ggtggaaaag atgttgatct cggagtcaaa        60
     tgtgtgatca tgtagaacgc agtggcaatg ggatggttat ctgtcagtgt gaagggctga       120
     gaatggtaag gtatgggtgc acggtgtaag gtgaaatatc tccatacaag aagcggagtt       180
     acttcctgcg caaagaattt gtagttgata ggagtttgga agactgatgg agaatctcgg       240
     ttaaagaatt tgactgctct cctggctgag atttgccaac ctggaccagc acagataacc       300
     ttggctgagg aggattcgag agaatgtgaa ggaggaagaa gccgagagag agagagagat       360
     gaaatttgga tacaagccac attccagggc acagtttcat tcccaagccc ttgtctgtgt       420
     ttccggggac tattagacac gaaggctgta tcaggactct tgcatgagat tttcactcgt       480
     tcttggcctt tctctagaag tacgtcgatt gccagcagtc cgtgcttggc acccatgtct       540
     tctcaaagta cacgaggtgt gggtcagtta aatgacaccc tatattttcc ctaagcggca       600
     aagacactgc ctattgaaat ggcagctcat agggtgtcct tcctcagtcg ttccttgatt       660
     tcattgtcca ggggccttta gtttgggtgt ttggaatgat atcttttctc tccaaaagag       720
     attctatact gtgtattcgt gtgaagcagt gactgagaaa gcacttgacc ctgaagtgct       780
     gcacatgtta tcagatatcc atcatgatag agaaaattgg gctccccagt gtgtggagtt       840
     gccttccttc ggaaaggtgc agtcccagag gtggccatgg ttctgatatc atgcccatgg       900
     agccttgtgc ccaaacaacc tctctgtgag aaaagaggtg tgtgatgggc catatgtggg       960
     aaagtctcac cctcaaacct tgagagttaa aggatggaca ccctgagctc ttgctctgga      1020
     ggtctgtcga agttgatgga aaggaggatc catcagatgg gtggtccttt tggatgaaca      1080
     ctattatcgc catctgtaga ctcatagcca ccactctcat caggctccca agctcaatgt      1140
     ggattctaga ggcttggtgt ttgaacatgt gatatcttca ggggatccgt gggcagaata      1200
     cctcacggga gttcctccat gtgaaaaaag agttgtgctt cagggccatt tgaaacaata      1260
     cctcccgcgg cacaaagaag gaatccatgc ccgaatgctc tccaccaagc gtgaggccct      1320
     ggatgtaacc cctcaaagag actttcccaa tggggcattt tcagctccac acttctgaat      1380
     ccatatttcc atagcctaag ccacagggga gccctccaaa cagaggcctt taaaccaaga      1440
     tgtatccggt ctatttcagg tgccttttcc acaggtggat aagaacaagc cctcccactc      1500
     attgagtgac ttactgggag tgtggtgcct ggggccaggg ccagtgtgtt tgttctatct      1560
     acagtcataa ggaaggaagc tgggacgatg atctgatctt ccaggagcgc tgtgatgatg      1620
     cctgcaatgt gagggtattg aaagttccct cctggaaggg agtgggctct gtccctgaca      1680
     ctcctgaggc tagagaatga ggaggtctaa tccatagaga ctggtttttg ttgacagaca      1740
     tcttgcactc tgggctcttg ttggccagcc cactcgccaa ggatgctcag accattgttt      1800
     ggatgcccag tcattgagac atgaagagtc ctagacatca tattctatat cccctaagaa      1860
     cgagtccaga gatcctcaca tgagcaaatc caccatacct catggaccag gtagggaatg      1920
     ctgcagatca gcactttctt gggagagcac tcatgggaac gttgtttcaa gtgcgttgca      1980
     ctctgcgtcc aatatgggac cctcgagacc gaagtacata tgaagtggtc agcgtgtcca      2040
     taggaaggga tgactatggg aagtatggtt taaggctgac ctagttgggg tgtctccaca      2100
     cagcacagga agtctttcag gaccacggaa tttatatgcg atcagaccta ggatgacagg      2160
     gagaaaaggc tgggggataa cttggacgat tctcttggca aatatatttg atccattatt      2220
     accccaggtc gaattgtagc aggaggatac aggagaaatt gaaggggggc aaaggggaga      2280
     gtgagagagc tagagagaag gagatgaaaa gaaggcgaga gagaggtaaa ggagctgttg      2340
     tttcaagcaa ctgtcaatgg caggataatt tctccaagga cgtgtctttc tttaaggtgg      2400
     ctagcacaca aatgggacaa accagcacac ttgtcccaga gtcttctctc cttcaaggcc      2460
     tgacgcccac attgtgtcta ttacaatccc tgctccatcc tggaagacag gtttgaaagc      2520
     cttgctgtgg tccctctatc ttctccaatg gcatggggtg gaaatcagag taagagatat      2580
     tccatagttt ccttcagggg aaaagcctcc tcccatggaa agagatgctc gtgtgttgtt      2640
     cttcctccat cggccattgt tttcctgttc aggctccgtg gggagtgggt ctttttcaat      2700
     gccatatttt ctttcctaat gaggttgtag actgtgtatt cctgggaagc agttttggaa      2760
     ccaccgtgtt gagcctgaca cacgttcagg ggaagaggca tccttctgta gagagcaggt      2820
     gggcacagag gaggtggagt tgccttccat ctagaagttc aggcccaatg gttgccatgg      2880
     caagggcatg ttgcgcacca agtattgtga cacaacacac cgtatgtgag aagagaggcg      2940
     agggatgggc ccaaagtggg aagctctcac cgtcaccccc aattggttgt acctcgggca      3000
     gcctgatctc atgatctgga ggtatgttga tactaaatga aacgaggatc cattggatgt      3060
     attggacaat tggatgataa gtagtatttc cagcattctt ctcatggcca ccattctcat      3120
     caggctgctg aggaaatagg cactgctcag gcttgctttt ggatgatgat ccatttgaaa      3180
     gggaccagtg agcctatccc ttccagtctt ttccaacagg gaaaaaaaga ctcctaagta      3240
     tgaccgggat gagaaatctc attccagatc tcaaagcctg aaaattggcc actcagcctt      3300
     ccaaaaaaga cgaggccctc aacatcaacc cttacgaaat actggaatgg gggcaaggac      3360
     cattccttgc ttcggaacgt acacgtccat agatgaaatc acaaactagc tctccacagt      3420
     aacaaatttc ccaagaatga agctgggata tgtctggtgg gtatttcaca ggttgataag      3480
     aataagtcct gtctaaaggg gtgctggatg gaagtggggt gactagttcc actgctggct      3540
     gtttgtgggg tacacagttg tcaggaattt aaggagtctc tcttgttatc ttccgtgagc      3600
     cctgtggtga gggctcccct tgggcaggac ttgaggtttc gctcttggac gagaggggcc      3660
     tctggcctgc caatggaggg tctagagaag gaggaggatt gtcccaaatg gagactggtt      3720
     tgaggggacc gaatcctgga actctgtccc attgtcattc agaccctgct gaagggtgct      3780
     cagacccctt cttagatgcc aaatcactga gacatggaga ggcagagaat tc              3832
//
ID   MLT2C2      repbase; DNA   ; MAM   ; 450 BP.
XX
AC   .
XX
DT   08-FEB-1999 (Rel. 4.01, Created)
DT   08-FEB-1999 (Rel. 4.01, Last updated, Version 3)
XX
DE   Interspersed repeat MLT2C2 - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT2C2.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
CC   [1] (Consensus)
XX
CC   This sequence is an endogenous retroviral LTR.
CC   Identified in humans and rodents.
XX
SQ   Sequence 450 BP; 114 A; 108 C; 94 G; 127 T; 7 other;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acaycagtct agatgttgct gtgaaggtat tttrtagatg tgattaacat ttayagtcag       120
     ttgactttaa gtaaaggaga ttaccctcca taatgtgggt gggcctcatc caatcagttg       180
     aaggccttaa gagcaaagac tgaggtttcc cgaggaagaa gaaattctgc ctcaagactg       240
     caacgtggaa atcctgctgn tttwccagcc tccaagcctt cggactcgaa ctgcaacatc       300
     arctcttscc tgggtctcca gcctgccggc ctaccctgca gatttcggac ttgccagcct       360
     ccacaatcgc gtgagccaat tccttaaaat aaatctctct ctacacacac cctattggtt       420
     ctgtttctct ggagaaccct gactaataca                                        450
//
ID   MER25       repbase; DNA   ; MAM   ; 2136 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   19-FEB-1997 (Rel. 2.01, Last updated, Version 2)
XX
DE   Older LINE1 5' end region - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; LINE1; MER25;
KW   Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   577-905
RA   Jagadeeswaran P., Biro A.P., Tuan D., Pan J., Forget G.B.,
RA   Weissman M.S.;
RT   "Interspersed repetitive DNA sequences of the human genome: are
RT   they transposons?.";
RL   Prog. Clin. Biol. Res 103, 29-35 (1982).
XX
RN   [2]
RA   Rogan K.P., Pan J., Weissman M.S.;
RT   "L1 repeat elements in the human epsilon-G-gamma globin gene
RT   intergenic region: sequence analysis and concerted evolution: a
RT   new sequence family.";
RL   Mol. Biol. Evol 4, 327-342 (1987).
XX
RN   [3]
RP   593-1047
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [4]
RP   1-2136
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. dissertation, Univ Southern California, 1995.
XX
CC   [4] (Consensus)
XX
SQ   Sequence 2136 BP; 690 A; 518 C; 475 G; 365 T; 88 other;
     acaaantagg gaaaaatggc ggataggagg caggactaaa ttgcagctcc cactcggatg        60
     gacagagcag catgtggaga ctcacatcgt gaacttttgc tccaagaacc accgcaggaa       120
     tataycaaga aagccgagag aatycacaga ccctctgaag gaagcagatt gctcctgcar       180
     gayccaggaa acggcccaaa aactgtgagt gcccaaagtg tgagaagggr aaaatctgcc       240
     cccgaacaca catcctyact ggggaacctg aagatccaga tcacaggaga aggatttgac       300
     cttacctgga gctgagacaa tttagagggc cgagcaaaat acaggggtag aggaagcagc       360
     gggaaaagcc ccgtgggcac tcccagtcyy yagnnaarcc cagggaagcc atttctgact       420
     tatctcacag gggtcccttg ggagggcagc cggaggaact gggaaagggs cacagggaaa       480
     agaaaacctc cagctgaact ttgtaataat tccgaccgak agagaaattt cctggccaga       540
     actmagggca gggcgrcgka agtgctggtg ggagaccaga agtgctgttg ggggggacac       600
     ggtrggagtg agacytgcct tttgagctgc atgggagctg ggtgaggcct gtnactgcca       660
     gctttccccc acttycctgg tgacctgcat gacacagaag aggcagccat aatccccctg       720
     ggaacgtaac tccattrgcc tgggaactac acccccatcc ctcacagtag ccgcagcaag       780
     ccccgcccaa ggagactctg agctcagaca tgcctaaccc tgcccccacc tgatggtctt       840
     tctctaccca ccctggtagc cgaagacaaa agacataawc tcttgggagc tctayggccc       900
     cacccatcgc ctgagaaacw gaaataytta ycywggcmam cttagggcaa gcttrtatcc       960
     wccctatact rtcgcagctg atgccctctt gaaagcgcca cctcttggct ggaggccaac      1020
     caactcaaga cattacagca aytcayraca gaataaccct gcccctarrr aaggagaaaa      1080
     cgacagctat caccactgcc tgcaacatcc tggctaacca gaggtcctga gtctgtccac      1140
     gtgayaastt cactrctaky ataaccagca ttcgagaaar ccagcacact aagtctatct      1200
     acaaccaagg aatctcacag agtctayttc actcccctgc cacctccatc agagctggtg      1260
     ctggtattca ccgctgrgag acttgaagac aggtcacatc acwggatycy ttgcagacat      1320
     tccccagyac cagcccggag tctggtagct ccactgggtg gctagaycca gaagagcaat      1380
     aacgatcact gyagtccggc tctcaggaag tcccattcct aggrgaaggg ggagagcacc      1440
     acatcaaggg aacaccctgt gggacaaaag aatctgaacg gcagsccttg agtcccagat      1500
     cttycctctg acatagccta cccaaatgag aaggaaccag aaaaayaatt ctggtaatat      1560
     gacaaaacaa ggttctttaa cacccccaaa aratcacact agctcaccag caatggatcc      1620
     aaaccaagaa gaaatcyctg aattgccaga aaaagaattc agaaggtcga ttattaagct      1680
     actcaaggag gcaccgagga aggtgaanac caacttaaag aaanttanaa tataatacag      1740
     gatatgaatg raraaatcty cagwgaaana gatagcataa akaaaaaaca atcamaactt      1800
     cwggaaatcg aagyacactt atagaaatgc gaaatgcwct ggaaagtctc arcaatagaa      1860
     tngaacaagc agaagaaaga acttcagagc tcgaagacaa ggytttcaaa ttaacccaat      1920
     ccgacaaaga caaagaaaaa agaataagaa aatatgaaca aagcctccaa gaagtctggg      1980
     attatgttaa acgaccaaac ctaagaataa tcggcgttcc tgagnaagaa gagaaatcta      2040
     aaagtttgga aaacttattc gnggaaataa tcgaggaaaa cttccccgrc sttgctarag      2100
     ayctagayat ccaamtacaa agaagctcwa wraaca                                2136
//
ID   CHARLIE1A   repbase; DNA   ; MAM   ; 1450 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 2)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; Charlie1a;
KW   DNA transposon fossil; MER1_type family; MER64.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1450
RA   Smit A.F.;
RT   "CHARLIE1A..";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   An internal deletion product of Charlie1 which is much more
CC   common
CC   than the full-length element.
XX
SQ   Sequence 1450 BP; 471 A; 261 C; 270 G; 440 T; 8 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactgt       120
     gttgacattt gcactgatgg tgcaaaagca atggtgggta aaactgctgg cgccttagca       180
     cggatcaagg cagtggcacc aaactgtact agtagtcatt gtattcttca ccgccacgcg       240
     ctcgcagtna aaaaaatgcc agtttcactt aagaatgtcc ttgatgaagc agtaaaaatk       300
     attaatttta ttaaatctcg acccttgagy acacgtcttt ttaatattct gtgtgacaaa       360
     atgggaagta cgcataaagc acttctgctg cataccgaag tacgatggyt gtctcgagga       420
     aaagcacttg tgcgattgtt tgagttgcga gctgaactag ctactttttt catggaacac       480
     catttttact tgaaagaacg actgacagac aaactrtggt tattcagact tgggtatttg       540
     gcagacattt tctcaaaaat gaacgaagtg agcctgtcac ttcaaggaaa acaactgacg       600
     gtatttgttg ccaatgataa aattcgagct ttcaagcgaa aattagaatt ttggaaaact       660
     tgtatctgcc accgtgagct tgacagcttc ccaatactta aagacttttc tgatgagatc       720
     ggtggtgata ttaacgaatg tgattttttg atattgtata atgaaatgtg tcaacatttg       780
     gaagatctgc ataactcagt gaaccartat tttccaaatg accaatgcat gatgttacaa       840
     aatcatgcat gggtaaaaga tccattcaaa gcgcaagata gaccaatgga ttttaatgta       900
     acagagtacg aaaagttcat tgatacggtt tcagattcca caccgcaact aacctttaag       960
     aaactaccac ttgttgagtt ttggtgtagt atcaaagaag aatatccaca attatctgaa      1020
     aaggctatta aaatactcct ctcttttcca actacatatc tgtgtgaggc cagattttct      1080
     tcatatactt caaccaaaac aacatatcgc aacagattga atgcagaagc agatatgaga      1140
     atccagctgt cttctattaa gccagacatt aaagagattt gcaaaaatgt aaaacaatgc      1200
     cactcttctc actaaatttt tttgttttgg aaaatacggt tatttttcat aaaaatgtta      1260
     tttatgttaa catgtaatgg gtttattatt ttwaaatgaa twaataaata ttttaaaaat      1320
     ttctcagttt taatttctaa tacggtaaat atcaatagat ataacccaca taaacaaaag      1380
     ctctttgggg tcctcaataa tttttaagag tataaagggg tcctgagacc aaaaagtttg      1440
     agaaccgctg                                                             1450
//
ID   ERV18_MD_LTR repbase; DNA   ; MAM   ; 322 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV18_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV18_MD_I;
KW   ERV18_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-322
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-322
RA   Gentles A., Jurka J.;
RT   "ERV18_MD, a prolific ERV1 class retroelement from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 360-360 (2005).
XX
CC   [2] (Consensus)
XX
CC   LTR flanking ERV18_MD_LTR. This consensus was reconstructed from
CC   the June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 322 BP; 99 A; 60 C; 84 G; 79 T; 0 other;
     tgtgtcaagg aagttcatcc cctccccctc ctgagtaact ttacctgtct atcaaacatt        60
     cctgacatac cacagttgcg ccagggttgc atcgtgtacg ttctgtacgt caataaaagt       120
     taaggtttgg ggcagaatgg gggggaacga caagagaacc agagggaaag gagaagagac       180
     agagcaggca ggtgaggggg aatgaggaag agactggcag gctaggcacc acgtggtcag       240
     gttacttagg aatgattgtc tacccttcca ataaacttta taaaatatat atctgggtag       300
     aaatattatt ttaattatta ca                                                322
//
ID   BOVTA       repbase; DNA   ; MAM   ; 210 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 2.03, Created)
DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   SINE element; retroposon BOVTA.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; BOVA; BOVA2;
KW   BOVTA; SINE element; retroposon; tRNA.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RA   Lenstra A.J., Boxtel A.J., Zwaagstra A.K., Schwerin M.;
RT   "Short interspersed nuclear element (SINE) sequences of the
RT   Bovidae.";
RL   Anim Genet 24, 33-39 (1993).
XX
RN   [2]
RA   Okada N., Hamada M.;
RT   "The 3' ends of tRNA-derived SINEs originated from the 3' ends of
RT   LINEs: A new example from the bovine genome.";
RL   J Mol Evol 44 (Suppl 1), S52-S56 (1997).
XX
RN   [3]
RA   Kapitonov V.V.;
RT   "BOVTA.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [3] (Consensus)
XX
CC   Retroposon; (CA)n tail; 5-15 bp target site duplications.
CC   5' end related to tRNA (~80 bp) is followed by the BOVA monomer.
XX
SQ   Sequence 210 BP; 54 A; 53 C; 64 G; 38 T; 1 other;
     gggcttccct ggtggctcag atggtaaaga atctgcctgc aatgcaggag acctgggttc        60
     gatccctggg ttgggaagat cccctggaga aggaaatggc aacccactcc agtattcttg       120
     cctggaaaat cccatggaca gaggagcctg gygggctaca gtccatgggg tcgcaaagag       180
     tcggacacga ctgagcgact aacacacaca                                        210
//
ID   LTR75_1_LTR repbase; DNA   ; MAM   ; 546 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from placental
DE   mammals.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-546
RA   Smit A.F.;
RT   "LTR75_1_LTR - ERV1 Endogenous Retrovirus from placental
RT   mammals..";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   19%.
XX
SQ   Sequence 546 BP; 134 A; 150 C; 111 G; 140 T; 11 other;
     tgttaccagg gcagccctga tgaaataact gggaaagctc atttttctta ctgtttttct        60
     ttagtctctt tatctatagg cacagctgct taaagaaacc agatggcccg gtggcgccag       120
     agcttcnnga cccctngcca gataccagag ggagataaga cccgcccgaa accggcgcaa       180
     accggaacag gtgaccccta gttgccttta gatcattaac atatcattat aatgctaaaa       240
     ttcccncccc taaaagaaaa tctctgccat tttgtgtaca tgcgntgtat gaagangcat       300
     gtttatgaac tgcgcctgcg catctggagt cccnccctgc acatgctnac atncctctcc       360
     cgccccgcac ctagctcctt aaaancccca tgcctcccat ngctcgggga gaaggtgtct       420
     ttagagcaag agctctctcc ttctccattc ctggccagtg aataaaacct gcttgccttt       480
     tccaattggg tgttctttct ttgcgaccga tacaaagtag ggaaagaact cagtttaccg       540
     gtgaca                                                                  546
//
ID   THER2_MD    repbase; DNA   ; MAM   ; 186 BP.
XX
AC   .
XX
DT   30-NOV-2005 (Rel. 10.11, Created)
DT   30-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   THER2_MD, a subfamily of old SINE element from Monodelphis
DE   domestica.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; MIR; MIR3;
KW   THER2_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-186
RA   Monodelphis domestica sequencing consortium ;
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-186
RA   Gentles A., Jurka J.;
RT   "THER2_MD, a subfamily of MIR3 SINEs from the opossum M.
RT   domestica.";
RL   Direct Submission to Repbase Update (06-OCT-2005).
XX
CC   [2] (Consensus)
XX
CC   Monodelphis-specific instance of THER2 CORE-sine ; possibly
CC   CR1-dependent, given similarity to CR1_MD. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 186 BP; 48 A; 45 C; 40 G; 53 T; 0 other;
     taagaaaaca atggatttgg agtcagagga cctgggttca aatcctacct ctgacactta        60
     ctacctgtgt gaccttgggc aagtcactta acctctctgg gcctcagttt cctcatctgt       120
     aaaatgaagg ggttggacta gatggcctct aaggtccctt ccagctctaa atctatgatc       180
     ctatga                                                                  186
//
ID   L1P_MA2     repbase; DNA   ; MAM   ; 7678 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 2)
XX
DE   LINE1 subfamily consensus; L1PMA2 subfamily.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 subfamily;
KW   L1M1_5; L1M3_5; L1MA2; L1P_MA2; LINE1; MER14; MER43.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1725-1900
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive element (SINE)
RT   families in human DNA and isolation of a novel MER repeat..";
RL   Genomics 18, 322-328 (1993).
XX
RN   [2]
RP   966-1089
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
RN   [3]
RP   7-2259
RA   Kapitonov V.V., Jurka J.;
RT   "L1P_MA2..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [4]
RP   7-3803
RA   Smit A.F.;
RT   "L1P_MA2..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [5]
RP   7520-7657
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [6]
RP   6635-7678
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [7]
RP   1-7678
RA   Kapitonov V.V., Jurka J.;
RT   "L1P_MA2..";
RL   Direct Submission to Repbase Update (05-1997).
XX
CC   [7] (Consensus)
XX
CC   Complete consensus sequence of L1 subfamily L1PM2; average
CC   divergence
CC   of L1P_MA2 sequences from their consensus is about 13%.
CC   L1M3_5 and L1MA2 sequences are the 5'- and 3' ends of the L1PM2
CC   consensus sequence, respectively.
XX
SQ   Sequence 7678 BP; 2974 A; 1448 C; 1512 G; 1601 T; 143 other;
     gaaggcggaa caagatggcc gaatagaagm ctccaccgat catcctccct gcaggaacac        60
     caaattgaac aactatccac acaaaaarst accttcataa gaaccaaaaa tcaggtgagc       120
     gatcacagta cctggtttta acttcatatc actgaaagag gcactgaaga gggtaggaaa       180
     gacagtcttg aattgccgat gccaccactc cyccatkccc gggcagtggc wgwgtggtgt       240
     ggagagagaa tctgtgcgct tgggggaggg agagtgcagk gattgtgaga ctttgcattg       300
     gaactcagtg ctgccctgtc acagtagaaa gcaaaaccag gcagaactca gctggtgccc       360
     acggagggaa catttagacc agccctagcc agaggggaat cgcctatccc agtggtcgga       420
     acctgagttc cggcaagcct tgccaccgcg ggctaaagtg ctctggggyt ctaaataaac       480
     ttgaaaggca gtctaggcca maaggactgc aantcctrgg caagtcctag tgctgwactg       540
     ggctcagagy cagtggactt gggggacaca tgacctaagg agacaccagc tggggcagcy       600
     aagggagtgc ttgcaccacc cctcyctyaa ctccaggcag cacagctcac ggctccgaaa       660
     gagactcctt ccttctgctt gaggagagga gagggragag taaagaggac tttgtcttgc       720
     aacttggata ccagctcagc cacagtagga tagggcacca rkcagagtcm tgaggccccc       780
     wttccaggcc ctggctcccg gacaacattt ctagacacac cctgggccag aagagaaccc       840
     gctgccttga agggaaggac ccagtcctgg caggatkcat cacctgctga ctaaagagcg       900
     cttgggccct gaatgatcar cagcgrtacc caggcartac tcastgtggg ccttgggtga       960
     gactcagaga cttgctggct tcaggtgtga ctcagcacat tcccagctgt ggtggctatg      1020
     gggagagact ccttytgctt gagaaaagsa gagggaaaag taaaggggac tttgtcttgc      1080
     accttaggta ccagctcggc cacagtgggr tagagcacca agtaggctct tggggtcccc      1140
     gattccagga cttggctctt ggatggcatt tctggacctg ccctgggcca gaggagagcc      1200
     cactgtcctg aagagagagt cccaggcctg gcagcattca ccacaagctg actgaagagc      1260
     ccttgggcct tgagwgaaca ttggcggtag ccaggcagta ctctccatgg gcctgggrtg      1320
     gtggtggcca cagggagcga ctcctttgcc tgtggaaagg ggagggaaga gtgggaagga      1380
     ctttgtctcg tggtttgggt gccagctcag ccacggtaga atagagcacc aggtagattt      1440
     ctaaggtttc tgactccagg ccctggctcc cggatgacat ctctggacct gcctgrggcc      1500
     wgggggaact taccaccctg aagggaagga cacaagcctg gctkgctttt scayctgctg      1560
     attgtagagc cctagggcct tgagcgaaca taggcggtag ccaggyagtg gttacagcag      1620
     gccttgggtg agacccagtg ctrtgctggc ttcaggtctg acccagcaca gtcccagtgg      1680
     tggtggccac aggggtgctt gtgtcaccmc tcccagcttc aggcagctca gmacagagag      1740
     agagactcca tttgtttggg ggraagtaag ggaagagaac aagagtctct gcctggtaat      1800
     ccagagaatt cttccggatc ttatccaaga ccaccaaggc agtacctcta tgagtctgca      1860
     agaaccacag tgttaytggg cttggggtgc cccctaawgc agatatggct acatgaccaa      1920
     aarcttagat cayaacaccc aagtccsttc aaatacctgg aaagccttcc caagaagrat      1980
     gggtacaaac aagcccagac tgtgaagact acaataaata cctaactctt caatgcccag      2040
     acactgacga acatccacaa gcatcaagac cttccaggaa aacatgacct caccaaacga      2100
     actaaataag gcaccagtga ccaatcctgg agaaacagag agatatgtga yctttcagac      2160
     agagaattca aaatagctgt tttgaggaaa ctcaaagaaa ttcaagataa cacagagaag      2220
     gaattcagaa ttctatcaga taaatctaac aaagagaytg aaataattaw aaagaatcaa      2280
     gcagaaattc tggagctgaa aaatgcaatt ggcatactga agaatgcatc agagtctytt      2340
     aacagcagaa ttgatcaaac agaaraaaga attagtgagc ttgaagacag gctatttgaa      2400
     aatacacagt cagaggagac aaaagaaaaa agaataaaaa acaatgaagc atgcctacaa      2460
     gatctagaaa atagcctcaa aagggcaaat ctaagagtta ttggccttaa agaggaggta      2520
     gaaagagaga taggggtaga aagyttaktt caarggataa taacagagaa cttcccaaac      2580
     ctasagaaag atatcaatat tcaagtacaa gaaggttata gaacaccaag cagatttaac      2640
     ccaaagaaga ctacctcaag gcatttaata atcaaactcc caaaggtcaa ggataaagaa      2700
     aggatcctaa aagcagcaag agaaaagaaa taacatgcaa tasagctcca atacgtntgg      2760
     cagcagactt ttcagtggaa accttacagg ccaggagaga gtggcatgac atatttaaag      2820
     tgctgaagga aaaaactttt accctagaat agtatatcca gtgaaaatat ccttcaaaca      2880
     tgaaagagaa ataaagactt tcccagacaa acaaaagctg agggatttca tcaacaccag      2940
     acctgtcctg caagaaatgc taaagggagt tcttcaatct gaaagaaaag gacgttaatg      3000
     agcaataaga aatcatctga aggtacaaaa ctcactggta atagtaagta cacagaaaaa      3060
     cacagaatat cgtaacactg taattgtggt atgtaaacta ctcatatctt aartagaaag      3120
     actaaaaaat gaaycaatca aaaataataa ctacaacaat tttcaagaca tagacagtac      3180
     artaagatat aaatagaaac aacaaaaagt taaaaagaga ggggatgaag ttaaagtgta      3240
     gagtttttat tagttttcga ttgtttgctt gtttgtttat gcaawcggtg ttgttatcag      3300
     cttaaaataa tgggttataa gataktattt gcaagcctca tggtaacctc aaatcaaaaa      3360
     acatacaaca gatacacaaa aaataaaaag caagaaatta aatcatacca ccagagaaaa      3420
     tcaccttcac taaaagaaag acaggaagga aggaaagaag gaagagaaga ccacaaaaca      3480
     accagaaaac aaataacaaa atggcaggag taaatcctta cttatcaata ataacattgg      3540
     aatgtaaatg gactaaactc taatcaaaag acatagagtg gctgaatgga taaaaaaaac      3600
     aakacccaat gatctgytgc ctacaagaaa cacacttcac ctataaagac acacatagac      3660
     tgaaaataaa gggatggaaa aagatrttcc atgcaaatag aaaccaaaaa agagcaggag      3720
     tagctatact tatatcagac aaaatagayt tyaagacaaa aactataaga agagacaaag      3780
     aatgtcattt aatgataaag gggtcaattc agcaagagga tataacaatt ttatatatat      3840
     gcacccaaca ctggagcacc cagatatata aagcaaatat tattagagct aagagagaga      3900
     tagaccccaa tacaataata gctggagact tcwmcacctg tcttttagca ttagaaawat      3960
     cwtccagaca gaaaatcaac aaagaaacat tgkacttaat ctgcactata gaccaaatgr      4020
     acctaataga yatttacaga acatttyatc caacagctgc agaatacaca ttcttctcct      4080
     cagcacatgr atcattctca aggatagrcc atatntnagg tcacaaaaca artcttaaaa      4140
     cattcaaaaa attgaaatta tatcaagyat cttctctgac cacaatggaa taaaactaga      4200
     aatcaataac aagagraatt ttggaaacta tacaaacaca cggaaattaa acaayatgct      4260
     yctgaatgac cagtgkgtca atgaagaaat taagaaggaa attkaaaaat ttcttgaaac      4320
     aaatgataat ggaaacacaa tataycaaaa cctatgagat acggtaaaag cagtactaag      4380
     agggaaagtt tatagctgta agtgcctaca tcaaaaaaga agaaaaactt cgaataaaca      4440
     acctaatgat gcatcttaaa gaactagaaa agcaagagca aaccaaaccc aaaattagta      4500
     gaagaaaata aataataaag atcagagcag aaataaatga aattgaaata aagaraacaa      4560
     tacaaaagat maatgaaaca aaaagttggt tttttgaaaa gataaacaaa attgacaaac      4620
     ctttagccag aytaagaaaa aaagagaaga cccaaataaa taaaatcaga gatgaaaaag      4680
     gagacattac aactgatacc acagaaattc aaatgatcat tagaggctac trtgagcaac      4740
     tatataccaa taaatcggaa aacctagaag aaatggataa attcctagac acatacaacc      4800
     tacyaagatt gaaccatgaa gaaatccaaa acctgaacag accaataaca agtaacgaga      4860
     tcgaagccgt aataaaaagt ctcccagcaa agaaaagccc gggacctgat ggcttcactg      4920
     ctgaatttta ccaaacattt aaagaattaa taccaatcct actcaaacta ttctgaaaaa      4980
     agaggaggaa ggaatactty caaactcatt ctatgaggcc agtatyaccc tgataccaaa      5040
     accagacaaa gacacatcar aaaaawaaaa ctacaggcca atattcctga tgaatattga      5100
     tgcaaaaatc ctyaacaaaa tactagcaaa ccaaattcaa caacacatta aaaaratcat      5160
     tcatcatgac caagtgggat ttatcccagg gatgcaagga tggttcaaca tatgcaaatc      5220
     aatcacaatc gatrtgatac atcatatcaa cagaatgaag gacaaaaacc atatgatyat      5280
     ttcaattgat gctgaaaaag catttgataa aattcaacat cccttcatga taaaaaccct      5340
     caaaaactgg gtatagaaga acatayctca cgacacaata aaagccatat acgacagacy      5400
     cacagctagt atcayactga atggggaaaa actgaaagcc tttccyttaw gatctgraac      5460
     atgacaagga tgcccacttt caccactgtt attcaacata gtactggaag tcctagttag      5520
     agcaatcaga caagagaaag aaataaaggg catccaaatt ggaaaggaag aagtcaaatt      5580
     atccttgttt gcagatgata tgatcttata tttggaaaaa cctaaagact ccaccaaaaa      5640
     actattagaa ctgataaaca aattcagtaa agttgcagga tacaaaatta acatacaaaa      5700
     atcagtagca tttctatatg ccaacagtga acaatctgaa aaagaaatca agaaagtaat      5760
     cccatttaca atagctacaa ataaaattaa atacctagga attaatktaa yaaaawaakt      5820
     gaaagatstc tayaatgaaa actataaaac actgatgyaa gaaattgaag aggacacaaa      5880
     aaaatggaaa gatattccat gtttatggat tggaagaatc aatattgtta aaatgyccat      5940
     actacccaaa gcaatctaca gattcaatgc matccctatc aaaatacyaa tgacattttt      6000
     cacagaaata gaaaaaacaa tcctaaaatt tatatggaac cacaaaagac ccagaatagc      6060
     caaagctatc ctaagcaaaa agaacaaaac tggaggaaty acattacctg acttcaaatt      6120
     atactacaga gmtatagtaa ccaaaacggc atggtactgg cataaaaaca gacacataga      6180
     ccaatggaac agaatagaga acccagaaac aaatccatac atytacagcg aactcatttt      6240
     cgacaaaggt gccaagaaca tacactgagg aaaagacart ctcttcaata aatggtgctg      6300
     ggaaaactgg atatccatat gcagaagaat gaaactagac cccatctctc gccatataca      6360
     aaaatcaaat caaaatrgat taaagactta aatmtaagac ctcaaactat gaaactacta      6420
     aaagaaaaca ttggggaaac tctccaggac attggatttg ggcaaagatt tcttgagtaa      6480
     taccccacaa gcacaggcaa ccaaagcaaa aatggacaaa tgggatcaya tcaagttaaa      6540
     aagcttctgc acagcaaagg aaacaatcaa caaagtgaag agacaatyca cagaatggga      6600
     gaaaatattt gcaaactacc catctgacaa gggattaata accagaatat ataaggagct      6660
     caaacaactc tataggaaaa aaatctaata atctgattta aaaatgggca aaagatctga      6720
     atagacattt ctcaaaagaa gacatacaaa tggcaaacag gtatatgaaa aggtgctcaa      6780
     cataaytgat catcagagaa atgcaaatca aaactacaat gagatatyat ctcactccag      6840
     ttaaaatggc ttttatccaa aagacaggca ataacaaatg ctggygagga tgtggagaaa      6900
     agggaaccct cgtacattgt tggtgggaat gtaaattagt acaaccacta tggagaacag      6960
     tttggaggtt cctcaaaaaa ctaaaaatag agctaccata taatccagca atcccactgc      7020
     taggtatata ccccaaagaa aggaaatcag tatattgaag agatatctgc actcccatgt      7080
     ttattgcagc aytgttcaca atagccaaga tttggaagca acctaagtgt ccatcaacag      7140
     atgaatggat aaagaaaatr tggtacatat acacaatgga gtactattca gccataaaaa      7200
     agaatgagat cctgtcattt gcaacaacat ggatggaact ggaggtcatt atgttaagtg      7260
     aaataagcca ggcacagaaa gacaaacatc gcatgttctc acttatttgt gagakctaaa      7320
     aattaaaaca attgaactca tggaaayaga gagtagaagg atggttacca gaggctggga      7380
     agggtagtgg gaggkngkgg gaagtgggga tggttaatgg gtacaaaaat atagttagat      7440
     agaatgaata agayctagta tttgvtagca caacagggtg actacagtca aaaataattt      7500
     attgtayatt twraaataac taaaagagta taattggatt gtttgtaaca caaaggataa      7560
     atgcttgaga tgatggatac cccatttacc ctgacgtgat tattatgcat tgtatgcctg      7620
     tatcaaaata tctcatgtac cccataaata tatacaycta ttatgtaccc ayaaaaat        7678
//
ID   L1MD1       repbase; DNA   ; MAM   ; 971 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 2.01, Created)
DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MD1) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1MD1; L1MD1 subfamily; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-971
RA   Smit A.F.;
RT   "L1MD1..";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   15%.
XX
SQ   Sequence 971 BP; 358 A; 155 C; 187 G; 257 T; 14 other;
     cttgtatcca gaatatataa agaactctca aaactcaaca ataaaaaaac aaacaatcta        60
     attaaaaaat gggcaaaaga catgaagaga catttcacca aagaagatat acaaatggca       120
     aataagcaca tgaaaagatg ttcaacatca ttagctatta gggaaatgca aattaaaacc       180
     acaatgagat atcactacac acctattaga atggctaaaa taaaaaataa tgacaayacc       240
     aaatgctggc gaggatgtgg agaaactgga tcactcatac attgctggtg ggaatgtaaa       300
     atggtacagc cactctggaa aatactttgg cagtttctta taaagctaaa catacamtta       360
     ccatatgact cagcaattay actcctaggt atttatccca gagaaatgaa aacttatgtt       420
     cacacaaaaa cttgtacacg aatgttyata gcagctttat tcataatagc cmaaaactgg       480
     aaacaaccca gatgtccttc aacgggtgaa tggttaaaca aactgtggta tatccatacc       540
     atggaatact actcagccat aaaaaggaat gaactattga tacatgcaac aacctggatg       600
     aatctccaga aaattatgct gagtgaaaaa agccagtctc aaaaggttac atactgtatg       660
     attccattta cataacattc ttgaaatgac aaaattwtag arwtgragar cagattcctg       720
     gttgccaggg gttagggacg ggggtggggg tggagggagg tgggcatsst ggagttccct       780
     gtggtgatgg aaatgttctg tatcttcact gtatcaatgt caatatcctg gttgtgatay       840
     tgtactatag ttttgtaaga tgttaccatt gggggaagct ggatgaaggg tacacgggat       900
     ccctctgtat tatttcttac aattgtntgt gagtgtgtaa ttatttcaaa ataaaaagtt       960
     taatttaaaa a                                                            971
//
ID   ERV12_MD_LTR repbase; DNA   ; MAM   ; 769 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV12_MD, a class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV12_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-769
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-769
RA   Gentles A., Jurka J.;
RT   "ERV12_MD, a class 1 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 350-350 (2005).
XX
CC   [2] (Consensus)
XX
CC   LTR corresponding to ERV12_MD_I. This consensus was reconstructed
CC   from the June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 769 BP; 183 A; 184 C; 197 G; 201 T; 4 other;
     tgtgatagag gctggcacta gagaaaaagt gccagactga agagtatgtg aaattgatca        60
     cctcgatggg ggaggggccc caggagtgga atyctgagga gagaagactc tgctgaggag       120
     agcagtgagg gtctctccgt cttgagatgt caaagagaga aggtggataa agactttctc       180
     ctgagggtta cccatttttc ctgctggtga ctggaaatct ttccccccaa cacttcccaa       240
     ttgaagggac ttctgaagag aaacctgagc agactttacc tcagctcctg actttctctc       300
     agggggctca ggctgccaag gcctgagttc cccccaaact tgaggaggga ggaaaagggt       360
     ttagatagag acagggaccc cttttcccca ctttcctttt cccattcttc cctgcccatt       420
     attccttttg tattacctga ttgagttaac attaaaagtt atctgttccc caagctgagt       480
     gtgagtgaat ggatcaaggg gagacctttt ggtctcgagt agtggagggg ggacaagagg       540
     gacaagagtg aattggggag agcagcttta gctaaggagg gaaggcagaa gggggaaaat       600
     cttcaaaccc cctctcctct ctctgagcca acccrttaca tctgctgtct cccctgaacc       660
     ccgctttgtg ggaagggagt tctcctctct ttccctctct ccataccwar ggtccaagcc       720
     tccctggggg tacatccctt cctttccttc tttttatttt ttttaaaca                   769
//
ID   MER87       repbase; DNA   ; MAM   ; 541 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Long terminal repeat.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   Long terminal repeat; MER4-group family; MER87.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-541
RA   Smit A.F.;
RT   "MER87..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   4 bp duplication sites. At several loci flanking an internal
CC   repeat
CC   similar to that of MER4 and MER57. Bp 5-176 are similar to bp 31-
CC   182 of LTR8, bp 399-520 are similar to bp 351-463 of LOR1.
XX
SQ   Sequence 541 BP; 140 A; 136 C; 107 G; 148 T; 10 other;
     tgtaacagtg gagggagacc tagcatgact gactccatct tgcctctgac ccccwgsggt        60
     awcatccttt aggctaaaag cttctgctta ktcctgcacg taggccaagc taactatggg       120
     aggaatttag tttatagttc aactttaaaa aagatggtaa cagtcccttt cccaaactaa       180
     cccccgagga gataaggaaa gtatacacac aaataacaat gttatgttaa agatttatag       240
     gaacattgtg acctgaccta ggacaaagaa gttttgmcaa ctcctcggac tcttgctggc       300
     gcccagatgt ctgtggtcat cggtcacctc ctaaccccaa taccccnctt sttccccttc       360
     ccctagcata aaaagaagcc taagattyat gctnatttga gatggttctt taggacgcta       420
     gtctgccatc ttctcggttt gctggctctc cgaataaagt cactttcctt gccacaacac       480
     ctcgtctctt gacttactgg ctgtcgwgcg gtgagcagta ccagctttgg attcagttac       540
     a                                                                       541
//
ID   SSAT_B      repbase; DNA   ; MAM   ; 331 BP.
XX
AC   .
XX
DT   26-NOV-2001 (Rel. 6.1, Created)
DT   26-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Sus scrofa centromeric repeat - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SSAT_A; SSAT_B; satellite DNA.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RA   Janzen A.M., Buoen B.L., Zhao F., Louis F.C.;
RT   "Characterization of a swine chromosome-specific centromeric
RT   higher-order repeat.";
RL   Mamm. Genome 10(6), 579-584 (1999).
XX
RN   [2]
RP   1-331
RA   Jurka J.;
RL   Direct Submission to Repbase Update (24-NOV-2001).
XX
CC   [2] (Consensus)
XX
CC   See commentary under SSAT_A.
XX
SQ   Sequence 331 BP; 64 A; 90 C; 105 G; 65 T; 7 other;
     aggtttgttc cccgagcaca gtttcccttt gcagaatgca gctcctagaa gcgcgttttg        60
     tgccgtttcg gagctaggcc ctaggtgggt ccctccctag ctggctatgg gggggttgct       120
     agggccagtg cacacagggc ttcttcaggc caaatcagcc ttctgcgcga aggagaagac       180
     gtttggagtt ggtttccagc tgcggagacc accagccaag cagcagtgcc cacggagcca       240
     gaggcagccc agaccctcct tggccctatg gggagccnag ggctaggkga gaastaggca       300
     agcgytgckw tcctgagcma agacgcattg g                                      331
//
ID   FASAT       repbase; DNA   ; MAM   ; 483 BP.
XX
AC   X06372;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   F.catus repetitive DNA satellite monomer FA-SAT.
XX
KW   SAT; Satellite; Simple Repeat; FASAT; FCFASAT; Repetitive DNA;
KW   satellite DNA.
XX
OS   Felis catus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Felidae; Felis.
XX
RN   [1]
RP   1-483
RA   Fanning G.T.;
RT   "Origin and Evolution of a Major Feline Satellite DNA.";
RL   J. Mol. Biol 197, 627-634 (1987).
XX
DR   GenBank; X06372; Positions       1     483.
XX
SQ   Sequence 483 BP; 90 A; 179 C; 131 G; 83 T; 0 other;
     tcctgaccgg caccgtccct tgtgccctca actcagccct tcggggagac cactgccctg        60
     ctgtgggttc ggcgcctgga acctcctggg acctaaccct aaccctaacc ctaccccgaa       120
     ccgggaccct cccccgaaac ctaagcctgc ctcgatccct aatcctgcat ttgagccgcc       180
     ttctggcatg ggccctcact tcagccctcg agggagatca cgagaccgga gtcgcttcgg       240
     ccctggcgac gtccctggcc cgaaccctaa ccctagctaa ggctctcccc tcatggggac       300
     ccaattccaa cgtctgacag catcacgcgc ctggggtcca gaagcggtgc aggctgactc       360
     ggcaaggcac ctggaagctc accatgtcgt ttcccaggcc cggctgcagc tcccgagagg       420
     attgcggagg cctcctcgac cgcgggagga acaacatgtg tggccgtggc agccaaagag       480
     gga                                                                     483
//
ID   L1MA5       repbase; DNA   ; MAM   ; 1047 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   07-OCT-1998 (Rel. 3.09, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MA5) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1M2; L1MA5; L1MA5 subfamily; MER27;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   781-951
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-1047
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [3]
RP   1-1047
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [3] (Consensus)
XX
CC   ORF2 ends at bp 684; average divergence of copies from consensus:
CC   14%.
XX
SQ   Sequence 1047 BP; 418 A; 161 C; 209 G; 258 T; 1 other;
     ttaatatcca gaatatacaa ggaactcaaa caactcaaca gcaaaaaaac aaataatccg        60
     attaaaaaat gggcaaagga tctgaataga catttctcaa aagaagacat acaaatggcc       120
     aacaggtata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcatctcac cccagttaga atggctatta tcaaaaagac aaaaaataac       240
     aaatgctggc gaggatgcgg agaaaaggga actcttatac actgttggtg ggaatgtaaa       300
     ttagtacagc cattatggaa aacagtatgg aggttcctca aaaaactaaa aatagaacta       360
     ccatatgatc cagcaatccc actactgggt atntatccaa aggaaaggaa atcagtatgt       420
     cgaagagata tctgcactcc catgtttatt gcagcactat tcacaatagc caagatatgg       480
     aatcaaccta agtgtccatc aacagatgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgcggc aacatggatg       600
     agcctggagg acattatgtt aagtgaaata agccaggcac agaaagacaa ataccgcatg       660
     ttctcactca tatgtggaag ctaaaaaagt tgatctcata gaagtagaga gtagaatagt       720
     ggttactaga ggctgggaag ggtaggggga gggggggata gggagaggtt ggttaatgga       780
     tacaaaatta cagctagata ggaggaataa gttctagtgt tctatagcac tgtagggtga       840
     ctatagttaa caataattta ttgtatattt tcaaatagct agaagagagg attttgaatg       900
     ttcccaacac aaagaaatga taaatgtttg aggtgatgga tatgctaatt accctgattt       960
     gatcattaca cattgtatac atgtatcgaa atatcacact gtaccccata aatatgtaca      1020
     attattatgt gtcaattaaa aataaaa                                          1047
//
ID   SINEC1_CF   repbase; DNA   ; MAM   ; 144 BP.
XX
AC   .
XX
DT   24-MAY-2004 (Rel. 9.04, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 2)
XX
DE   Dog SINE element SINEC1_CF.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   SINEC1_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-144
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 91%. Supersedes previous
CC   SINEC1_CF.
XX
SQ   Sequence 144 BP; 14 A; 53 C; 41 G; 36 T; 0 other;
     gggcagcccg ggtggctcag cggtttagcg ccgccttcag cccagggcgt gatcctggag        60
     acctgggatc gagtcccaca tcgggctccc tgcatggagc ctgcttctcc ctctgcctgt       120
     gtctctgcct ctctctctct ctct                                              144
//
ID   SINEC1A_CF  repbase; DNA   ; MAM   ; 168 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Dog SINE element SINEC1A_CF.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   SINEC1A_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-168
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1A_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 90%.
XX
SQ   Sequence 168 BP; 20 A; 56 C; 44 G; 48 T; 0 other;
     gggatccctg ggtggctcag cggtttagcg cctgcctttg gcccagggcg tgatcctgga        60
     gtcccgggat cgagtcccac atcgggctcc ctgcatggag cctgcttctc cctctgcctg       120
     tgtctctgcc tctctctctc tctctctgtg tctctcatga ataaataa                    168
//
ID   THER2       repbase; DNA   ; MAM   ; 169 BP.
XX
AC   .
XX
DT   24-MAR-2000 (Rel. 5.02, Created)
DT   24-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   tRNA-related SINE element from therians.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; MIR; MIR3;
KW   Repetitive sequence; THER1; THER2; tRNA.
XX
OS   Mammalia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi.
XX
RN   [1]
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing elements
RT   with common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96, 2869-2874 (1999).
XX
RN   [2]
RP   1-169
RA   Jurka J.;
RT   "THER2.";
RL   Direct Submission to Repbase Update (MAR-2000).
XX
SQ   Sequence 169 BP; 38 A; 39 C; 35 G; 50 T; 7 other;
     tctagagtca gargacctgg gttcaaatyc crnttctgac acttnatagc tgtgtgacct        60
     tgggcaagtc acttaacgtc acctctctgn gcctcagttt cctcatctgt aaaatgaagg       120
     ggttggatta gatagcctct aaggtccctt tcagctctag akctatgat                   169
//
ID   MER5A       repbase; DNA   ; MAM   ; 189 BP.
XX
AC   .
XX
DT   01-MAY-1996 (Rel. 1.04, Created)
DT   07-OCT-1998 (Rel. 3.09, Last updated, Version 3)
XX
DE   Nonautonomous DNA transposon. Medium reiteration frequency MER5
DE   repetitive sequence - a consensus.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER5; MER5A;
KW   Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   34-185
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the
RT   human genome..";
RL   Nucleic Acids Res 18(1), 137-141 (1990).
XX
RN   [2]
RP   1-189
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   14 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
SQ   Sequence 189 BP; 46 A; 51 C; 47 G; 43 T; 2 other;
     cagtggttct caaagtgtgg tccccggacc agcagcatca gcatcacctg ggaacttgtt        60
     agaaatgcag attctcgggc cccaccccag acctactgaa tcagaaactc tgggrgtggg       120
     gcccagcaat ctgtgtttta acaagcyctc caggtgattc tgatgcatgc tcaagtttga       180
     gaaccactg                                                               189
//
ID   ERV12_MD_I  repbase; DNA   ; MAM   ; 8030 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV12_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV12_MD_I;
KW   RNaseH; integrase; reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-8030
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-8030
RA   Gentles A., Jurka J.;
RT   "ERV12_MD, a class 1 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 349-349 (2005).
XX
CC   [2] (Consensus)
XX
CC   A class I ERV, with copies that are ~93% similar to this
CC   consensus. The corresponding 769 bp LTR is ERV6_MD_LTR. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV12_MD_I_1p"
FT                 /translation="FLVGGEQVSYQLPLWSVTKLRKRVYCKRETVLELSAI
FT                 GSSHLGSYLARSKACGDNNHFLTVNSWQLEPRKDLMGNMLQLILWSTVLGI
FT                 IAIYWGYCIIYNTVAGMIDNVLGTLTNMTMGWTQLPMNYLDVNYLWQIIPQ
FT                 VYVVFLVVTNILKNIKAGANLIFQKKTVHALVIDNRLETLFGQIPLITEMY
FT                 QDYMQRKQSMGKGTDEETGDVTGQTNKDDVVTNTNTGTPLGAVGGNDLANN
FT                 IQAPINASANNLANASKAQKIMPLCDIAKVTDNSGILHAKVHKSFTTHDLE
FT                 SLHKRMPKFLLEPHLAIKELKRAFRLYEPDFEDVEILLSELFTPQEHKNFI
FT                 EQTRKDSSLTSWPEVFEDLDFSNPRSMAYLRKCHEDLLQGMKQLSERPNAW
FT                 GKFDRLSQEKNEHPSTFIDHLIEKTEGLLGFSPDSKEAEVHVRRQFLKGCD
FT                 KHLRDFFRNYCPKFDTISLNELRDIATYLHDNEVDQEKEKNDLKKKLQETS
FT                 EILRQKELEEVKNLATIKTFNRQTTQYRQTPQSQQRVQRDTRTCFLCSHQG
FT                 HIVRNCPMKHRYEQGQNKRDGKGQNAYYQGKVYNNKNYGRQDSNSKQCCSH
FT                 CRLREQETPDLKSMEAAIASGAKPRYSEVVVRNKHYTA"
FT   CDS           0..0
FT                 /product="ERV12_MD_I_2p"
FT                 /translation="VPQLKSKMVTLGPLSIDHTFLLIPGCPDNLLGRDFLC
FT                 KIGATLQCEQSGNIYLHLPKQSLKHYPLLFLGQLDETTDQQQAITSLYDIP
FT                 TDIPQGVWAAHKNDVGMIKSVQPVKIEVKDCIPPKIPQYKLSKEAEEGITP
FT                 IINSLLEQGILRHTVSEYNSPILAIKKSKPNSDGTVNWRFVQDLRAINNII
FT                 KKTHTITPSPNDIISEIPSNALWYTIIDLSNAYFMVPLHPDSQNIFAFSWK
FT                 KNKLCWTRLVQGCCESASIFCQLLKRDLENIKFKHSKLVHYVDDLLLASPD
FT                 AKTCLEDSKRLLIELYKRGHKVSKTKLQWVLPKVEYLGFILEKGTRKISSK
FT                 RIADIQKLGIPCTKRQLRAFLGTTGFSRHYISGYSYISKCLTDLTKDEVEE
FT                 PLKLTKEHLHALSTLKQAILTAPALGIPNYNKDFHLYVHEAKGIASGVLAQ
FT                 YLGLTLRPIAYYSAILDPVAKGLVHCLCSIAAAALMVKKANELVLGCKLHV
FT                 YSAHQLEKLLKSQSRHAFTSARLSQYEIILLANDNLFLHRCAPLNPATLIP
FT                 DLPLGEKPLHDCTQTVETVHRTREDLKDTPLNDPDLQIYSDGSSYVFKGKR
FT                 ITGAAVVMGDRTLWHASLPSHVSAQGAELRALIEALVQSKGKRVNIYTDSA
FT                 YAFGILFATGQTWKNRGFVTTSGKRIAYENLINQLLEAVNLPKEVAVIHCK
FT                 AHSSGKDEVSLGNHRADITARFAARFGPIHVLNFSLVDKHDLKQAYCQEEI
FT                 QSWQEHLGARLVRGIWLSQGGKPILPKRLYQHLCNVIHSRGHYGVQSMLDE
FT                 VRRFWEAPGISTTAIRVCQTCDICRKFNQGHFKCKALGG"
XX
SQ   Sequence 8030 BP; 2843 A; 1520 C; 1662 G; 2002 T; 3 other;
     gttggcaccc cagatttaaa aggaccccat ttattaaaaa aaaaaaamct ttagtgactg        60
     tcaccaactg ccatcaactg tcagttgtca attacaactc ctgaggctag cagcctttgt       120
     cactgactct gcctagcagt ttccacacag gatcaaaaac atcttgattc cttgtggggg       180
     gagaacaagt cagttaccaa ctgccactct ggtcagttac aaaactgagg aagagagtct       240
     attgtaaaag ggaaactgta ctagagctgt cagcaatagg atctagccat cttggatcct       300
     atctagctag aagcaaagct tgtggggaca acaaccattt tctaactgtt aactcctggc       360
     agttagagcc tagaaaagat ctaatgggaa acatgttaca actaatacta tggtcgactg       420
     tgctaggaat aattgccatt tattggggct actgtatcat ttataataca gtggcaggga       480
     tgatagacaa tgttctgggg acattaacca atatgactat gggatggaca cagttgccaa       540
     tgaattatct agatgtaaat tacctctggc aaatcatacc ccaagtctat gttgtgttct       600
     tggtagtgac taacatctta aagaatatca aagctggtgc caacctgatc ttccaaaaga       660
     aaactgtaca tgctctagtc attgataata gattagagac attgtttggt cagatccctc       720
     ttataactga gatgtaccag gattacatgc agagaaaaca aagcatgggt aagggaaccg       780
     atgaggagac tggggacgtg acgggacaga ctaataagga tgatgtagtt actaatacta       840
     atactgggac accattaggt gcagtagggg gaaatgacct tgccaataac atacaggcac       900
     caattaatgc atctgctaac aatcttgcaa atgcatcaaa ggctcaaaag attatgcctt       960
     tgtgtgatat agctaaggtc actgataact ctggcatttt acatgcaaag gttcataagt      1020
     cattcaccac ccatgactta gagtctttac ataaacgtat gcctaaattt ttattagagc      1080
     ctcatctcgc aattaaagaa ctgaaaagag catttcgcct ctatgaacca gattttgagg      1140
     atgtagaaat tcttttatct gaacttttta caccccagga acataaaaat tttattgagc      1200
     aaactagaaa agattcttca ctcacgagct ggccagaagt ttttgaggat ctggattttt      1260
     ctaatccaag atcaatggct tatctaagaa aatgccatga ggatctattg cagggaatga      1320
     agcaattgtc agaaagaccc aatgcatggg gaaaatttga cagattatcc caagaaaaaa      1380
     atgaacaccc aagcacattt attgatcacc ttattgaaaa aactgaggga ctgttaggtt      1440
     ttagccctga ttcaaaagaa gcagaagtac acgtgaggag acaatttctc aagggctgtg      1500
     ataagcactt gagggatttc ttcaggaact attgccctaa gtttgacacc atctcactta      1560
     atgaacttag agatattgcc acctatcttc atgataacga agtagatcaa gaaaaagaaa      1620
     agaatgatct aaagaaaaag ctccaagaga cctctgaaat attaaggcag aaagaattag      1680
     aggaggttaa aaacctggct acaattaaga catttaacag acaaaccaca cagtatagac      1740
     agacacccca aagtcaacag agggtgcaaa gagataccag gacttgcttt ttgtgttctc      1800
     atcaaggaca catagtaaga aactgcccga tgaaacatcg ctatgaacag ggccaaaata      1860
     agagagatgg gaaaggtcaa aatgcatatt atcagggaaa agtatataat aacaaaaact      1920
     atgggagaca ggactctaat agcaagcagt gttgctctca ctgcagactt agagaacagg      1980
     agaccccaga cctgaaatcc atggaagcag caatagcttc tggagcaaaa ccccgttatt      2040
     cagaagttgt agtgagaaat aagcattata ccgcatgatg ccaggctcta gcattatcta      2100
     gtaaaaaaga gatgaatttg gaaggtaccc cagggaggaa acatgagggc ataagcataa      2160
     agggaaaaaa gggagatggt agaaaggaaa aagaaaactt taaaatttta gtggtggaga      2220
     aacagatagt tgggcaagat gccaagggaa gcaacttaag tacaaaacaa aaagctataa      2280
     ttgaggtgga aaatgatgga gagagaaatt gcacagataa tagcagacat gaaacatgac      2340
     atttatggtt cacaatacat gggcacacaa aactgcatgg agaaaagcaa ggaacagatt      2400
     aaatcctttt tggaaaattt tttagcttgc agaatggatc taggcagtgg aaaatcaaac      2460
     ggggctagca aatctttcaa acagcaactt aagtatgcag accattctga caagatagct      2520
     aaatgagaca ttgttgcaag agactttgga gctgaaaaat ttatacatct aagaggggaa      2580
     agaaaggaaa atgaggggag aactaactta aatccaaaag ccaaagactt ttacccacga      2640
     aatcctataa cactcaaaga taccagtcct ggggatgggt ttagcacaga tcaataccaa      2700
     acttccaatg actgtatatt ccctgaacca gagactgcaa aacaatgtaa gggagtggga      2760
     acagaagagt ctttgatagt gaaacctcat ccaagcagtt ctcaaactga aattaataca      2820
     aacacaaacc tttcctctga gcaagctgtt agctcacaga cagcagtggt ccaaagtgat      2880
     acaagtgtat tacaaaccct ggggcaagaa agtaaagatg ataatgggaa acctgtgcat      2940
     gcaaacaaca caatagctag tttgcaatat gaggcagaga tacaagaacc ctatgtatgg      3000
     atcaaagtgg gagatcaaaa ttacaagact ctcattgata cgggggcagc caaatccata      3060
     ttaaagtcat tcccagggga caccacgata gagggtatgg tttcagtggc aggtgctacg      3120
     ggacagatag aatgagtccc acaattgaaa tctaagatgg taacgctagg tccactgtcc      3180
     attgatcata cattccttct aataccaggg tgtccagaca atcttttggg acgtgatttt      3240
     ctttgtaaaa ttggggcaac tttacaatgt gagcaatcag ggaacattta cctccattta      3300
     ccaaaacaat ccctgaaaca ttatcctcta ttatttttgg ggcagcttga tgagaccact      3360
     gatcagcagc aggctattac ctctctttat gacattccta cagacattcc acagggtgta      3420
     tgggcagcac ataagaatga tgtgggaatg attaaatcgg tacaaccagt aaagatagaa      3480
     gtcaaagact gtatacctcc caagatccct cagtataagc tcagcaaaga agctgaagaa      3540
     ggcataacac ctattatcaa cagcttgctg gagcagggca tattgagaca cacagtgtca      3600
     gaatataata gcccaatact agctattaaa aagagcaagc caaattctga tggtacagta      3660
     aattggcgat ttgtgcagga tctcagagca atcaataata taatcaagaa aacccatacc      3720
     atcacaccat ctcccaatga cattatttct gagattccta gcaatgcatt atggtatacc      3780
     ataattgact taagcaatgc atattttatg gttcctctcc atcccgatag tcaaaatata      3840
     tttgcattct catggaagaa aaataagctc tgctggactc gtttagtgca gggctgttgt      3900
     gagagtgcat cgattttctg ccagctgctg aaaagagacc tagaaaatat aaaattcaaa      3960
     cacagcaagc tagtgcatta tgtggatgat ctgcttctgg catcccctga tgcaaaaaca      4020
     tgcctagaag actcaaagag gctgttaata gaattgtaca aaagaggaca taaggtctca      4080
     aaaacaaagt tgcaatgggt tctcccaaaa gtcgagtacc taggttttat cctggaaaag      4140
     ggcaccagga aaatatccag taagagaata gcggatatac agaaactagg tattccatgt      4200
     acaaaaagac aacttagggc attcctgggc actactgggt tctcacgtca ttatatctca      4260
     ggatattcat atatttccaa gtgtctcaca gatctgacaa aagatgaggt tgaggagcca      4320
     ttgaagctca caaaagaaca tctacatgct ctgtccactt taaaacaagc tatcctaaca      4380
     gctccagccc ttggcattcc aaattataac aaagattttc atttatatgt ccatgaggct      4440
     aagggtatag cttctggagt gctagcccaa tatctaggat tgactttaag acctattgca      4500
     tattacagtg caattttgga cccagtggca aaaggcttgg tgcattgtct gtgcagcatt      4560
     gctgctgctg ccctcatggt taaaaaagct aatgaattag tgctgggatg caagctccat      4620
     gtttactctg cacaccagct agaaaaattg ctaaaatccc agagtaggca tgcatttaca      4680
     tctgcaaggc tatctcagta cgaaatcatt ttgctggcaa atgacaatct atttttacat      4740
     agatgtgcac cattgaatcc agccacatta atccctgacc taccattggg agaaaagccc      4800
     ctacatgatt gcacacagac tgtagaaaca gtacatagaa ccagagaaga tctgaaggac      4860
     acaccactca atgatccaga ccttcagata tattcagatg gttcttcata tgttttcaaa      4920
     ggcaaaagaa tcacaggggc tgcagttgtg atgggggaca ggaccctctg gcatgcatcg      4980
     ttaccaagtc atgtcagtgc tcaaggagct gagctcagag ccctcataga agcgctggtg      5040
     caatccaaag gcaaaagggt gaatatatat acggattcag cttatgcctt tggaatttta      5100
     tttgccacag gacaaacttg gaagaatagg ggatttgtca caacatctgg aaaaaggata      5160
     gcatatgaga acctcataaa ccaactctta gaagcagtga acttgccaaa ggaagtggca      5220
     gtgatccatt gcaaggctca ctcctctggc aaggacgagg tatccctagg aaatcacagg      5280
     gcagatataa cagcaagatt cgctgccaga tttggtccta tccatgttct gaatttctct      5340
     ctggtagata agcacgatct caaacaagca tactgccaag aggagattca gtcatggcaa      5400
     gaacatctag gagccagatt agtcagagga atctggttat cacaaggagg aaagcccatc      5460
     ttgcccaaaa ggctgtacca acatctatgc aatgtgattc actccagagg tcattacgga      5520
     gtgcaatcca tgctggatga ggtccgccgg ttttgggaag ctccagggat atcaacaact      5580
     gctataagag tgtgtcagac atgtgacatc tgtagaaagt ttaatcaagg tcatttcaaa      5640
     tgcaaggcat tgggaggatg acccctagct tatatgcctt ttcagtgtct acagattgat      5700
     tttattaaca tgcctgggga ccgaggatat aaatatgttt tagtcatagt ggacagactc      5760
     actcgatgga cagaagcata tccatcaaag aaaaacaaca ctggcatggt agtgaaaaca      5820
     ttgcttaaag aaatagttcc tagatatggc attccaaaca ccatagactc agacagggga      5880
     agtcacttta catctagcat tttacaacaa gtgtataagt ctctgggaat aaagggtaat      5940
     ttccataatg cgtatagacc agaaagttca ggacaggtgg aaagaatgaa taaggaatta      6000
     aaaaccacga tagctaaact ctgtgcccaa actcatctta aatggacaga ggttcttcca      6060
     cttgcgctgt tctatctgag gacgaaaccc agaggagact tacatatttc cccatatgag      6120
     atgttgtatg gacagccagt atggatagga aggaccgcta aaccatctta tctttccatg      6180
     ctgggagggg aatgccagtt acacacctat ctgacacaga tacaaaatag gctggaagaa      6240
     ctgagaaggc tgggactact agtgcaaagg gtcccactag atttctcatt acataacata      6300
     agaccagggg acaaagtata tgtaaaaaat tttgccaaag acaaacccac agagcccaga      6360
     tggattggtc catatgatgt agctctcacc actcctacat cgatcaaagt agtaggaaaa      6420
     gattcttggc ttcacgcatc tcacgttaaa catcactatg cccatgataa cacaccaaaa      6480
     gacaacttaa tggaagccca agaatccatt caaacacaga tgccccaaga acaacccttg      6540
     ataaataaac atagagccca tgaatccaac aaaatcgcac aagaagaaat agagatactg      6600
     aacagagaca gtgaaactga aatagaataa tgcccaagac agatagtata aatttgggtt      6660
     agttagatca gggaggatta gtgtagcctg tgaaacacag gagaagcggt tccttgtgga      6720
     acctgggagt ttatttgggt ggatttagaa tcccttagaa ttattaaacc tatatacgaa      6780
     tttcaatctc aagcctagac taaaatatca ttaacctcta caatcaacca cataggaata      6840
     gaataattgc cttacaatca cacattaaga aagataccta cattcattac attaaaaaaa      6900
     aatctcactt gcacacatga ggatggcaca aacatcctgt ataaagtttc actcacatgc      6960
     atcaaaatat tcactcttac atgcaygcac atgttaatct tacacacacg catgatcctg      7020
     tagttccaga tacctgagat catctttcaa ggtgagacga caggcaagta tgtatcctgt      7080
     aaaggagaag gcaccccgga cctgtgacaa acttcaagca ataccaaagg atggaagata      7140
     cacagacaac tggaaagaac tttgaatcaa agacattatg gggaatgaac ttcaggaaaa      7200
     tgggtcatgt aagattaatc gccgatcaca ttaacttcac atatagggaa gtacatccac      7260
     atatacattg gaataaatat gcatccacca tgacatatct agaacatgaa caaatttcac      7320
     actgacatta ggggctgtgc cgtaaataag gacagcccat aaattgtata tctgtaaata      7380
     aatctctact accagaagat atatatgtat ttaaataaca tgtgacatat gtaaatgtgt      7440
     aaaaatagca gacatgtata tatatagcat aataatgatc taatccagta atatagatag      7500
     aaaggagagt taaaatacta accattaata gacagggaca gagtagttta gggtggaaaa      7560
     gggaatattg taactagaga ggtaacatag ggacagaata aatcagattt catttagata      7620
     caagttaata tatatatata tatwtatata cctataaatg ttatgaattg ttacattgga      7680
     attagcatta cataaggcat aggatagttc aattttactt aagatttaaa ttttatattg      7740
     attgcaatag gaatgacttt tgtattaaga aattgttata ttgtaaaaat tttgttggca      7800
     cataatccta accctcttcc cacaactcag tcttagcata agataggaac ttagattagc      7860
     aaatagacag attaggataa gatttattat tttgggaggg gggaggttag atgggaacaa      7920
     taagtagcat agatagatta gaatagacat agaagataag taactggcgt gggccagggt      7980
     ggcaccacgt gaacaacagg aaatggagga tttgtgacag aggctggcac                 8030
//
ID   MER45       repbase; DNA   ; MAM   ; 178 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   28-JUN-2000 (Rel. 5.05, Last updated, Version 3)
XX
DE   Nonautonomous hAT-like DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER45;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-178
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RP   1-178
RA   Smit A.F.;
RT   "MER45..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Orientation reversed to agree with gene orientation in MER45R
CC   [2].
XX
SQ   Sequence 178 BP; 30 A; 52 C; 50 G; 46 T; 0 other;
     cagggccggc ttcatgggcg tgcgacctgt gcagtcgcac agggccccgc gctcagaagg        60
     gccccgcgct tggtttaatg ctctgctgtc gccgtcttga aattcttaat aatttttgaa       120
     caaggggccc cgcattttca ttttgcactg ggccccgcaa attatgtagc cggtcctg         178
//
ID   CarERV2b1_LTR repbase; DNA   ; MAM   ; 409 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-409
RA   Smit A.F.;
RT   "CarERV2b1_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 bp TSD 8-9% subst.
XX
SQ   Sequence 409 BP; 105 A; 121 C; 79 G; 104 T; 0 other;
     tgatgaggga acagggctag ctgaggacaa agcacagctg atatcccaca aacgaccccc        60
     acccagggtg ggatatgtgt gacattcctc aggaagcttc cagttgtctt aatgttaatg       120
     ccttgctaga gggaaaagca atctttaact tgacaatggc aaggcctcca gtatcttgta       180
     ggtcctcctt agcatatgaa aatccttttg aaatctccct tttccttacc tcccccaact       240
     ccgcaggtat ataatcagcc acccctcaca ggcccggggc agcagctctt cctgcccacg       300
     ggtcctgtcc ccgtgcttta ataaaaccac cattttgcac caaagacgtc tcaagaattc       360
     tttcttggtc gtcggctcca gacctcacct atattccaaa acttcatca                   409
//
ID   MER8        repbase; DNA   ; MAM   ; 239 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MER8;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-239
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   24 bp terminal inverted repeats, TA target site.
XX
SQ   Sequence 239 BP; 59 A; 63 C; 54 G; 58 T; 5 other;
     cagttgtccc tctgtatann cgggggattg gttccaggac ccytgtgtat acmaaaatcc        60
     gcgcatactc aagtcccgaa gtcggccctg cggaacccac gnatatgaaa agtcggccct       120
     ccatatatac gggtttcgca tcccgcgaat actgtatttt caatccgcgt ttgattgaaa       180
     aaaatccgcg tataagtgga cccacgcagt tcaaacccgt gttgttcaag ggtcaactg        239
//
ID   BTCS        repbase; DNA   ; MAM   ; 298 BP.
XX
AC   X51355;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine consensus sequence.
XX
KW   BTCS; Repetitive element.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-298
RA   Chee M.;
RT   "BTCS.";
RL   Direct Submission to Genbank (05-JAN-1990)Chee M., MRC Laboratory
RL   of Molecular Biology, Hills Road, Cambridge CB2 2QH, U.K..
XX
RN   [2]
RP   1-298
RA   Chee S.M., Rizos H., Henderson R.B., Baker R., Stewart S.T.;
RT   "Subfamilies of serine tRNA genes in the bovine genome.";
RL   Mol. Gen. Genet 231, 106-112 (1991).
XX
DR   GenBank; X51355; Positions    2800    3097.
XX
SQ   Sequence 298 BP; 66 A; 81 C; 76 G; 75 T; 0 other;
     agttaatgag tatgctgctg ctgctaaatc gcttcagtcg tgtctgactt ggtgcgaccc        60
     cactgacggc agcccaccag cctcccctga ctctgggatt ctccaggcaa gaacactgga       120
     gtgggttgcc atttccttct ccaatgcatg aaagtgaaaa gtgaaagtga agactctcag       180
     tcgtgtccga ctctttgcaa ccctatggac tgcagcccac caggctcgtc catccagggg       240
     attttccagg caagagtact ggagtggggt gccattgcct tctccagtta atgagtat         298
//
ID   ERV7_MD_LTR repbase; DNA   ; MAM   ; 351 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV7_MD, an endogenous retrovirus (class 2) from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERV7_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-351
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-351
RA   Gentles A., Jurka J.;
RT   "ERV7_MD, an endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 388-388 (2005).
XX
CC   [2] (Consensus)
XX
CC   The corresponding internal sequence is deposited as ERV7_MD_I.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
SQ   Sequence 351 BP; 100 A; 79 C; 52 G; 119 T; 1 other;
     tgtagcatac caggtatatt agcatcttga aagtattatt gatgtattga tattgtatct        60
     tatgtgttca tataccagac tcatggtcat gttacttctt gattattgta tttccaaatc       120
     ttcagtccaa aggacaaaag aattcctgag caggacatta tttgccacag ggtcctagct       180
     cccaccttgt cagaccacat tccataccaa gtcacatgtt tgattaacct cctcctcttt       240
     gattatgtga ttgtcaattg aaccaatgtt aaawcctatg tcatgtcaca tgttcattag       300
     ctacctccca ctccacattc ctagattctc caataaaagt ttgggaacac a                351
//
ID   SINE_UT     repbase; DNA   ; MAM   ; 189 BP.
XX
AC   AB108791; AB108792; AB108795; AB108801; AB108806; AB108809;
AC   AB108810; AB108812; AB108819;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Urotrichus talpoides DNA, SINE like sequence.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE-like;
KW   SINE_UT.
XX
OS   Urotrichus talpoides
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Talpidae; Urotrichus.
XX
RN   [1]
RA   Nakata A., Kuro-o M.;
RT   "Analysis of the phylogenetic relationships in the Japanese
RT   Insectivora based on the DNA sequences of the short interspersed
RT   repeated elements (SINEs).";
RL   Unpublished.
XX
RN   [2]
RA   Nakata A., Kuro-o M.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (18-APR-2003)Akifumi Nakata,
RL   Department of Biofunctional Science, Faculty of Agriculture and
RL   Life Science, Hirosaki University; 3 Bunkyo-cho, Hirosaki, Aomori
RL   036-8156, Japan (E-mail:nakata@cc.hirosaki-u.ac.jp,
RL   Tel:81-172-39-3591).
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "SINE_UT consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 88%.
XX
SQ   Sequence 189 BP; 44 A; 62 C; 30 G; 49 T; 4 other;
     ccagggagma acccacatgg ygsaacagac ctctcctgtc tcgcccgctg ctcccctcag        60
     cagtgtattt catcatctgc ctgttctgct ccccgctctg tctctggtga atcctctcac       120
     ctcccrcacc tctggcctgt accccagtgc ttgtatgcat aaataaataa atctttaaaa       180
     aaaaataaa                                                               189
//
ID   SSAT_A      repbase; DNA   ; MAM   ; 331 BP.
XX
AC   .
XX
DT   26-NOV-2001 (Rel. 6.1, Created)
DT   26-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Sus scrofa centromeric repeat - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SSAT_A; satellite DNA.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RA   Janzen A.M., Buoen B.L., Zhao F., Louis F.C.;
RT   "Characterization of a swine chromosome-specific centromeric
RT   higher-order repeat.";
RL   Mamm. Genome 10(6), 579-584 (1999).
XX
RN   [2]
RP   1-331
RA   Jurka J.;
RL   Direct Submission to Repbase Update (24-NOV-2001).
XX
CC   [2] (Consensus)
XX
CC   This is one of the two closely related subfamilies. Not checked
CC   for completeness.
XX
SQ   Sequence 331 BP; 66 A; 88 C; 104 G; 68 T; 5 other;
     aggttngttc cccgagcaca gtttaggttc gcagaatgca gcttccmgaa gcgagttttg        60
     tgccgtttct gagatcggcc ctaggkgggt ccctcccgag ctggctaagg gtgggttgct       120
     ggggcctgtg caaacaaggc cttttcctgc caaatcagcc ttctccccga aggagaacat       180
     gtttggagtg ggtttcaggc tatggagacc acccgcnaag cagcagggcc cacggagcca       240
     gaggcagccc agaccctcct tggccctatg gggagcatag ggccrggtga gaactaggca       300
     agcgttgctt tcctgagcaa agacgcattg g                                      331
//
ID   BTSAT4      repbase; DNA   ; MAM   ; 1402 BP.
XX
AC   J00035;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine satellite I (1.715 gm/ml).
XX
KW   SAT; Satellite; Simple Repeat; BTSAT4; Repetitive sequence;
KW   Satellite repetitive element.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1402
RA   Gaillard C., Doly J., Cortadas J., Bernardi G.;
RT   "The primary structure of bovine satellite 1.715.";
RL   Nucleic Acids Res 9, 6069-6082 (1981).
XX
DR   GenBank; J00035; Positions       1    1402.
XX
SQ   Sequence 1402 BP; 271 A; 351 C; 484 G; 296 T; 0 other;
     aggctgcctc ttgtgttggc ccaggcaagt ccaatcttcc attcgagttg cgaaggaaag        60
     ctggggattg ctctcgagtg actgcagggc caatagacct catctaggct tgtgtccaga       120
     agccagtgtt cctctccagg ggcgacaggg atctcggggt tgcattccag acgcacccgg       180
     ggagacaggc attcatctcg agtggaagca aagaacgtcc gctctgctct cgaatcgcga       240
     cgggtatctc ttggagctca ctgggtggac tcaagggagt caagcctcct gaggcgtttg       300
     gagagaggtc gcgagattgg tctctaggcc acgcaggaga cgaaggccct catctctcga       360
     tgacggggga atctcggggt tgttctcgag cggcggcccc agtgtgcggt ttctcacgag       420
     gtacgacggc gaggtcagtg agcctctcgt ggggcgccag ggaagtcggg tctccatgcg       480
     agtggcgagg gggagcgcgt cattgctccc gagccatggt aggggaatgt ggcctcgaga       540
     cgtgttgaag aaggtctctc gaggtctttc tcgggttgag gcaggaaacc ctgggttccc       600
     tcgacttgtg caggtgacct cagggggctt ctcatggtgg ctctgagaag ccagggaaac       660
     tggaggtggg aggggcctct cgggactcca ctgggcttgg tgcattggaa gagggcctca       720
     tctccagttg aggcaggaac cgcagggtac ctctgatttc agactccgat cgcagggtcc       780
     ctgcagactg gggacaggag agtcaggcct cgtcttgggt tgaggcatgg aactccgctt       840
     gcctctcgag atgtccccgg ggagagaggc cgcttgtcga gctgtatttg gaacctgggg       900
     ttttttccga acgatgcacg gaaaaactgc cccttcgtgt tgacttcatt cacaggctgg       960
     agttcggaga ggtgtccggg catcgggttc ttatcaagag gggaccggga aatcggggtc      1020
     ctacggaatg tggaaccacc cacgaggcca cgtctggaat gtcttcgtga gaccggcctc      1080
     atcctgaggt gcgaccggaa ggatcgggaa ccccttccag acaaagcagg ggagtcgacc      1140
     ctcctgtcca gatcaggagg ggagaaaggg ctcagaggag ggggtgccgg aaaacctcag      1200
     tgttcctctc gagggagacc gggatttcgg ggaactttgt gggtcgcatc aagggtgcca      1260
     agggcccttt cgacctccaa ttcctaacgt gggacttctc ctgaggcgca gtagcgggaa      1320
     agggcttcat cttgcgatga cgggggagcc acgtggtttt tctcgagtta cggcgggatt      1380
     ctcgagttac gacggggaat tc                                               1402
//
ID   THER1       repbase; DNA   ; MAM   ; 208 BP.
XX
AC   .
XX
DT   24-MAR-2000 (Rel. 5.02, Created)
DT   24-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   tRNA-related SINE element from therians.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; MIR;
KW   Repetitive sequence; THER1; THER2; tRNA.
XX
OS   Mammalia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi.
XX
RN   [1]
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing elements
RT   with common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96, 2869-2874 (1999).
XX
RN   [2]
RP   1-208
RA   Jurka J.;
RT   "THER1.";
RL   Direct Submission to Repbase Update (MAR-2000).
XX
SQ   Sequence 208 BP; 61 A; 41 C; 46 G; 58 T; 2 other;
     atatggtaca gtggatagag tactggacct ggaatcagga agacctgagt tcaaatccag        60
     cctcagatac ttactagctg tgtgaccttg ggcaagtcac ttaacctctg tctgcctcag       120
     tttcctcatc tgtaaaatgg ggataataat agcacctacc tcccagggtt gttgtgagga       180
     tyaaatgaga taatatttaa agyactta                                          208
//
ID   L1B_OC      repbase; DNA   ; MAM   ; 887 BP.
XX
AC   M94361;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Rabbit LINE repetitive sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1B_OC;
KW   LINE1 (L10c11) repetitive sequence; OCL1B; Repetitive sequence.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RP   1-887
RA   Ayres A.J., Price K.D., Pasqualone M.D., Cabell H.C., Miller W.,
RA   Hardison C.R.;
RT   "The 5' end of LINE1 repeats in rabbit DNA define subfamilies and
RT   reveal a short sequence conserved between rabbits and humans.";
RL   Genomics 14, 320-331 (1992).
XX
DR   GenBank; M94361; Positions     125    1011.
XX
SQ   Sequence 887 BP; 288 A; 181 C; 248 G; 170 T; 0 other;
     gaagcggcaa gatggtggaa taggaaggga gcacactgat agtccgagga gagacagttt        60
     aataaaagta ggagatactg caggttcaag aaagagtagg ggaataaaca gcagaggaaa       120
     cttttcctat tctagtgatt cacagtggac ctgcgtggag agcatgggag cccacagttc       180
     agactcaaca caccagcgct agaacgcaag gtgagccgaa catcaaaagc ccgagacacc       240
     gataggcaaa tggaaagagg agactagagg gaatgaggct tgagacccag tgggaaattt       300
     ccatggctct ggaagagaga gagagagaaa aaaaagtgac gtacgacacg tttctctctc       360
     tctcacctct caagggcgag caagacaaag agcaggattt tggcatcgtc ataagcaggg       420
     tgacctcaga gctgcaccca ccctcagcca agggaaaaaa catgagtctg gaggggaggg       480
     ggtgaaataa caggagatta ggacctagtg aatgtgtggt gctaatgaac tgagactgtg       540
     aaaaaagaga cggtgggtga gagaactcat ggaattcatg tgaatactct ccagagacgc       600
     tacaattcgg taagcttggc aacccagtgg gagactgcag gagaatttga gcccacacac       660
     tgagcagaac tgattccctg tgatggtcct tggggaagag gcttccgatc tctggctcct       720
     cgtgtggtat atcatttgcc tgctaactac ctccaattcc gttcagctgt gcggaattac       780
     ttcccgttaa agaaagaaag aaaaaggaaa gaaagagaga gatttaccat acctaaccta       840
     ggagtgtcac ctttggccca cccttaaccc tgaggaacca aataaag                     887
//
ID   BTSAT5      repbase; DNA   ; MAM   ; 330 BP.
XX
AC   X03161;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine satellite DNA I repeat.
XX
KW   SAT; Satellite; Simple Repeat; BTSAT5; Repetitive sequence;
KW   satellite DNA.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-330
RA   Pages J.M., Roizes P.G.;
RT   "Nature and organization of the sequence variations in the
RT   long-range periodicity calf satellite DNA I.";
RL   J. Mol. Biol 173, 143-157 (1984).
XX
DR   GenBank; X03161; Positions       1     330.
XX
SQ   Sequence 330 BP; 75 A; 116 C; 74 G; 65 T; 0 other;
     cactcgagag caatccccag ctttccttcg caactcgaat ggaagattgc acttccctgg        60
     gccaacacaa gaggcaccct gaattccccg tcgtaactcg agaatcccgc cgcaactcga       120
     gaaaacccac gtggttcccc cgtcatcgca agatgaagcc ctttcctgct agagcgtctc       180
     aggagaagtc ccacgttagg aattggaggt cgaaacggta cttggcaccc ttgatgcgcc       240
     cgacaaagtt ccccggcatc ccggtctccc tcgagaggaa caccgaggtt ttccgccacc       300
     acttcctctg agccccttcg accctcctga                                        330
//
ID   SHREP1      repbase; DNA   ; MAM   ; 300 BP.
XX
AC   L06638;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Sorex haydeni mitochondrion repeat region.
XX
KW   Repeat region; SHREP1.
XX
OS   Sorex haydeni
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Soricidae; Soricinae; Sorex.
XX
RN   [1]
RP   1-300
RA   Stewart T.D., Baker J.A.;
RT   "Patterns of sequence variation in the mitochondrial D-Loop
RT   region of Shrews.";
RL   Unpublished (1992).
XX
DR   GenBank; L06638; Positions       1     300.
XX
SQ   Sequence 300 BP; 118 A; 61 C; 24 G; 97 T; 0 other;
     aaattaaacc acctttattc atagaatcac acaaattgac tcaaactttt agtctaaatt        60
     tcgataactt acacctaact aacaacacaa aaaaaatcta acctcatctc ttacattcca       120
     cttccacagt aacatatata ccacatgcat ataagcatgt acatacgatg tttaatagta       180
     cattatacat acaatgtata tcgtacattc aattatattc gacatgcata taagcatgta       240
     catacaagtt taatagtaca ttatacattc gatgtatatc gtacattcga ttatattcga       300
//
ID   OOREP1      repbase; DNA   ; MAM   ; 1579 BP.
XX
AC   M36451;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   O.orca highly repetitive element DNA.
XX
KW   OOREP1; Repetitive element.
XX
OS   Orcinus orca
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Cetacea; Odontoceti;
OC   Delphinidae; Orcinus.
XX
RN   [1]
RP   1-1579
RA   Widegren B., Arnason U., Akusjaervi G.;
RT   "Characteristics of a conserved 1,579-bp highly repetitive
RT   component in the killer whale, Orcinus orca.";
RL   Mol. Biol. Evol 2, 411-419 (1985).
XX
DR   GenBank; M36451; Positions       1    1579.
XX
SQ   Sequence 1579 BP; 368 A; 358 C; 333 G; 520 T; 0 other;
     atcttatgat gtttcttttt ttgtgtgact tatttcatgt agaatcatcg tacctgaatc        60
     cactcattat gctgctacgg gcctgatgac atagatttca ttgctgagtg atattgcatt       120
     gtacgtaagt accacaaagt ctttatccat ttttcgcttt ctgcgatact gaacttgtac       180
     cataaacgag gttcttgtaa acagagccgt cacaaacttt gggatggctg tgtctttttc       240
     attttaattt caactaagct ataggaccat aagtggaagt gccctaggct ctgttgcttt       300
     gttgtttaga tgtttcagga aacaccatac acttctccag agtggctgtt ggcaatttac       360
     atcccgccca tcagcataac aaggctccca attctccatg gcctgtcccg cctttctgga       420
     ttttacactt ttttcagatg gcccttttga ccgtggggca gtgagacttc atgtagtgca       480
     gatttccttt gcaagcttgc ttggttggcc aaaaagttcg tatgcgtttc tttctgaata       540
     tattcaggaa aaaacgcata agaccttttt ggccaagtgc atcattgtgg acgttctgcc       600
     tgttttccta tgctttacat gcaattccag tctacctcct gaaatcggtg tctggcaatt       660
     ttgccccgct ttcaagtcct cttggcagcc ttacttcaat atatttttgg acgatagctg       720
     tcatttataa ctctgcaggt ttgtgaatca cagtgcccct gagctccttt cttcaactgg       780
     ctttcttgtg agctggctgc aacaccgcag gattgcttga ggccctcgtg tggttccggc       840
     agggcacgct gagccttttg ttaattcctc ttcctggtgg gaaatgaggg ttaaatttgc       900
     ccgtccagac acctccagct agtctctcat tgattctccc tattcctgtt cattttccgc       960
     agaaattgca aactgggcca aacaggaggt taaaggcact gactctccaa gtggggagag      1020
     tgttagtaaa gcgtctggaa tcttgcaccc gagtaccagg ggacgaaaac tgagacacat      1080
     ttgaacacgt ttcccgatca cacggtggat catactctgg gttccacatg catgttttag      1140
     ctgaaggaag aatcccttaa acctggagag ttgagaccca tggaatgggt accatgcaat      1200
     atgacttcaa agggtctgta tttgctaact gaaactcact aatcctatca ctgctgcgtt      1260
     tatgccactg tacacacgct tgattccctt tcggagacat ataagtccac aggttttaag      1320
     attcttacta gtcaggtata ttcttaggag tttaatatgg agtgttgagt ccactcgatc      1380
     agcaaggagt agctcttgtc tattaaatat ttggcttatg gaacggtatc tgtgctgatt      1440
     tcaatctctg gttttatgca gcacctcaac tcacctttcc ccttaagcaa gcataagttg      1500
     ctgttctaca tttgagaccc tgttctgttt tgtaattcag ttcctgtgta gccaagttta      1560
     cattccgtgt agtagtgat                                                   1579
//
ID   ALTR2       repbase; DNA   ; MAM   ; 321 BP.
XX
AC   .
XX
DT   09-OCT-1997 (Rel. 2.09, Created)
DT   09-OCT-1997 (Rel. 2.09, Last updated, Version 1)
XX
DE   Retroviral long terminal repeat.
XX
KW   LTR Retrotransposon; Interspersed Repeat; ALTR2; AMER1; LTR;
KW   Long terminal repeat.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-321
RA   Smit A.F.;
RT   "ALTR2.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Putative LTR. AATAAA signal present, possibly 4 bp duplication.x.
XX
SQ   Sequence 321 BP; 90 A; 84 C; 50 G; 92 T; 5 other;
     tggccccaga tagntganat acaatnaang aaatwattcc agtgagccca gactcttgca        60
     tcttcccata catagaaaag cgctaaattc cttaactcga gatatctggt tttctctact       120
     tcacaaaaat acctttgagg ttcaaactac ctgccctttc ttgcaaactg ctatataacg       180
     tggcctctac cccccacctc cttggagcac ttctctcaga gtaatctgag aggctgtctt       240
     cctgggcaac agtcctcagt aaggtaccaa ataaaacata actctcaact ttaggttgtg       300
     acttttttct tcaagtcgac a                                                 321
//
ID   ARMER1      repbase; DNA   ; MAM   ; 316 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 2.03, Created)
DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   ARMER1 repetitive element - a consensus.
XX
KW   ARMER1; Repetitive element.
XX
OS   Hippopotamidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla.
XX
RN   [1]
RA   Chopra V., Kapitonov V.V., Jurka J.;
RT   "ARMER1.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Putative LTR-like sequence.
XX
SQ   Sequence 316 BP; 119 A; 43 C; 65 G; 79 T; 10 other;
     tgggattgac ayatacacac tactatattt aaaatggata accaacaagg acttactgta        60
     tagcacaggg aactctactc artgttctgt gacaacctag aggggtggga tgggggagga       120
     ggtgggaggg aggttcaaga gggaggggat atatgtatac ctatggctga ttcatgttga       180
     tgtatggcag aaaccaacac aatattgtaa agcaattatc cttcaattaa aaataaatta       240
     aaaaattatc ttaaaaaaaa gwatmatbwa aatttwttaa aaaaacagac acacayamac       300
     acacttyttg ttgaca                                                       316
//
ID   MIR         repbase; DNA   ; MAM   ; 262 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Mammalian-wide interspersed repeat (MIR) - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; MB1; MER24;
KW   MIR; MIR1; Repetitive DNA.
XX
OS   Mammalia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi.
XX
RN   [1]
RA   Degen J.S., Davie W.E.;
RT   "Nucleotide sequence for human prothrombin..";
RL   Biochemistry 26, 6165-61677 (1987).
XX
RN   [2]
RA   Donehower A.L., Slagle L.B., Wilde M., Darlington G., Butel S.J.;
RT   "Identification of a conserved sequence in the noncoding regions
RT   of many human genes..";
RL   Nucl. Acids Res 17, 699-710 (1989).
XX
RN   [3]
RA   Jurka J., Zietkiewicz E., Labuda D.;
RT   "Ubiquitous mammalian interspersed repeats (MIRs) are molecular
RT   fossils from the Mesozoic era..";
RL   Nucleic Acids Res 23, 170-175 (1995).
XX
RN   [4]
RA   Smit A.F., Riggs D.A.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation..";
RL   Nucleic Acids Res 23, 98-102 (1995).
XX
CC   [4] (Consensus)
XX
SQ   Sequence 262 BP; 69 A; 52 C; 61 G; 74 T; 6 other;
     acagyayagc atagtggtta agagcacggr ctctggagcc agactgcctg ggttcgaatc        60
     ccggctctgc cacttactag ctgtgtgacc ttgggcaagt tacttaacct ctctgtgcct       120
     cagtttcctc atctgtaaaa tggggataat aatagtacct acctcatagg gttgttgtga       180
     ggattaaatg agttaataya tgtaaagcgc ttagaacagt gcctggcaca tagtaagcgc       240
     tcaataaatg ttrgytatta tt                                                262
//
ID   SINE1_BB    repbase; DNA   ; MAM   ; 237 BP.
XX
AC   AF327249;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Bubalus bubalis clone Bubuasc1 SINE Bov-A2 repeat sequence.
XX
KW   SINE1; SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   Putative SINE; SINE1_BB.
XX
OS   Bubalus bubalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bubalus.
XX
RN   [1]
RA   Nijman J.I., van Tessel P., Lenstra A.J.;
RT   "SINE Retrotransposition During the Evolution of the Pecoran
RT   Ruminants.";
RL   J. Mol. Evol 54(1), 9-16 (2002).
XX
RN   [2]
RA   Nijman J.I., van Tessel P., Lenstra A.J.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (29-NOV-2000)Infectious Diseases and
RL   Immunology, Dept. of Bacteriology, Utrecht University, Faculty of
RL   Veterinary Medicine, Yalelaan 1, Utrecht 3584 CL, The
RL   Netherlands.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 237 BP; 97 A; 23 C; 39 G; 78 T; 0 other;
     tgagattcag agaaagaatc agaaagaaga agttagaaga aaaaaagcat gatagagtct        60
     agtttttgtg atttaaaaat atcttttata aaaaagataa aacatgtttt tgttgctttt       120
     attttagtat tgtaaaatat tataaagcac ttttctaggt tatctatagt ctgtgacaat       180
     agtctgtgaa accctcaaga aatgacagat acatgctaac ttaaatagca ataatga          237
//
ID   L1MB7       repbase; DNA   ; MAM   ; 922 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 2.01, Created)
DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MB7) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1MB7; L1MB7 subfamily; MER12;
KW   Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-920
RA   Smit A.F.;
RT   "L1MB7..";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   17%.
XX
SQ   Sequence 922 BP; 365 A; 149 C; 176 G; 223 T; 9 other;
     cttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tttgaataga catttctcca aagaagatat acaaatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatta gggaaatgca aatcaaaacc       180
     acaatgagat accacttcac acccactagg atggctataa ttaaaaagac agacaataac       240
     aagtrttggc gaggatgtgg agaaattrga accctcatac attgctggtg ggaatgtaaa       300
     atggtgcagc cactttggaa aayagtttgg cagttcctca aaaagttaaa catagaatta       360
     ccatatgacc cagcaattcy actcctaggt atatacccaa gagaawtgaa aacatatgtc       420
     cacacaaaaa cttgtacacg aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aactgatgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagccat aaaaaggaat gaagtactga tacatgctac aacatggatg       600
     aacctcgaaa acattatgct aagtgaaaga agccagacac aaaaggycac atattgtatg       660
     attccattta tatgaaatgt ccagaatagg caaatccata gagacagaaa gtagattagt       720
     ggttgccagg ggctgggggr aaggggaaat ggggagtgac tgctaatggg tacggggttt       780
     ctttttgggg tgatgaaaat gttctaaaat tagatagtgg tgatggttgc acaactytgt       840
     gaatatacta aaaaccactg aattgtacac tttaaaaggg tgaattttat ggtatgtgaa       900
     ttatatctca ataaarctat aa                                                922
//
ID   L1-6_MD     repbase; DNA   ; MAM   ; 1412 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   L1-6_MD, a partial consensus of a LINE1 element from Monodelphis
DE   domestica.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1-6_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-1412
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-1412
RA   Gentles A., Jurka J.;
RT   "L1-6_MD, a frequent L1 element fragment from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(10), 315-315 (2005).
XX
CC   [2] (Consensus)
XX
CC   Copies of this partial LINE1 sequence number over 122000 in the
CC   genome. Their mean similarity to the consensus is around 88%.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
SQ   Sequence 1412 BP; 569 A; 192 C; 293 G; 358 T; 0 other;
     taaacccaaa gatcactttg ggataagaac ccactatttg acaaaaactg ctgggaaaat        60
     tggaaaacag tatgggaaaa attaggttta gatcaatatc tcacacccta taccaagata       120
     aattcaaaat gggtaaatga cttaaatata aagagtgaaa ttataagtaa attaggtgaa       180
     catagaatag tatacctgtc agatctatgg gaaaggaaag aatttaagac caagcaagag       240
     atagagaaca ttacaagatg taaaatgaat aattttgatt atattaaatt aaaaaggttt       300
     tgtacaaaca aaaccaatgc aaccaaaatt agaagggaag caacaaactg ggaaaaaatt       360
     ttataacaaa attctctgac aaaggtctaa tttctcaaat atataaggaa ctaagtcaaa       420
     tttataagaa atcaagccat tccccaattg acaaatggtc aagggatatg aataggcagt       480
     tttcagatga agaaatcaaa actatcaata atcacatgaa aaagtgttct aaatccctcc       540
     tgattagaga aatgcaaatc aaaacaactc tgaggtacca cctcacacct agcagattgg       600
     ccaatatgac agtaaaggaa aataataaat gttggagggg atgtggcaaa attgggacac       660
     taatgcattg ctggtggagt tgtgaattga tccaaccatt ctggaaggca atttggaatt       720
     atgcccaaag ggctttaaaa gaatgcatgc cctttgatcc agcaatacca ctactaggtt       780
     tgtaccccaa agagataata aaaaatggtt gtacaaaaat atttatagct gcactctttg       840
     tggtggcaaa aaattggaaa atgagggggt gtccctcaat tggggaatgg ctgaacaaat       900
     tgtggtatat gatggtgatg gaatactatt gtgctataag gaatgatgaa ctgcttgatt       960
     tctataagaa ctggaaagac ctccatgaac tgatgcagag tgaaatgagc agaaccagga      1020
     gaacattgta cacagaaact gaaacattgt gggatgatca aatgtaatcg actttgctac      1080
     taatagcaat gcaatgatcc aggacaatcc tgagggactt atgagaaaga atgctatcca      1140
     catctagaga aagaactgtg ggagtagaaa tgcagaagaa aaacatatga tttatcactt      1200
     gtttatatgg gtatatgatt tggggttttg gttttaaaag attactctat tacaaaaatg      1260
     aataatatgg aaataggtat tgagtgataa tacatgtata acccagtgga attgcttgtc      1320
     agctctggga ggggggaggg aaggggaggg agagaacatg aatcatgtaa ccatggaaaa      1380
     atattttaaa aaaaaaaaaa aataaaaaaa aa                                    1412
//
ID   MER31I      repbase; DNA   ; MAM   ; 4936 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   MER31I repetitive element - a consensus.
XX
KW   Endogenous Retrovirus; Interspersed Repeat;
KW   Internal sequence of retrovirus-like element; MER31I; MER4 group.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-4936
RA   Smit A.F.;
RT   "MER31I..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   MER4-type internal sequence, related to MER4i, MER41i, MER57i,
CC   and
CC   MER65i. MER31i is flanked by either MER31 or MER67 LTRs.
XX
SQ   Sequence 4936 BP; 1503 A; 944 C; 832 G; 1608 T; 49 other;
     gttgtggtgc cacaggcctc tgacccagaa cctgaagtat gcacctttga aacctttgtc        60
     ttcactcttg gctgactgat cgggaatcca ttggtaagcc caactcttga gccagtgctc       120
     cagatggcag tctgttgaag catggtgagg atacattttg attcttaagg tccaggcttc       180
     ttttgaaagg tannatacct cctgggctgg aagwttttcc tcctggctct ttgtttcgag       240
     tggggattca ctccctgact cctgggctgg magtcttttt ttggccctct gtgaggcctc       300
     tctgttctct ctatctgatc cttctcctcc cataggaact tctcagtcga ctgaaacccc       360
     tttctcgaac ccctgcwgac tatatgctcc gccaactctg tccacctcct tccttgttgg       420
     cacgattttg ctgaggataa tttggaactt cagtggcctc tttgggaaac ttgagatctc       480
     cccaaactgg ctcctctaag acctctccct tcccattgcc tctgctcctc cttctgccac       540
     cttcgatctt ctcttcagtt tccttgaatc ctttgatatg tcccccttca agcccctacc       600
     tcctccaccc ctctatccac ccctgccaga cctttycctt ctcactccag cccctcaact       660
     ccctatagtc attagagctt taggcctcct gccmcawcag ggggcgckcg aggggctcag       720
     ggacacccaa aagcaaccac ccgaggctga aaaggctarc tggaaacaga ctggatattt       780
     tatccactca gatggacttt ggagacatcc agacgtccgc ttggtgtctc ctcagtccct       840
     cacctaaaat ttagtccaca gcctctatcg gattacacat cagggcaaag aaaatcttaa       900
     aggtctcctc cacaaatatt sgtrgaaagc tttagccctc atgttgagya ggtaacctca       960
     acttgtccca tctgccagaa acacaattca gataaaaata taaagtgggg caaagataat      1020
     gagccaactc tcttatatta accagtgagt tttgtattwc tgtgtttatg cctgattcat      1080
     ggctaaaatt ttagaatkaa agctgtaaga tctctatttg tatctgtctg tatgtttatg      1140
     tatgtatgtt atgtatatgt gatatttttc tacctccaga tggtattacc aaattaattt      1200
     ataaaatccc ttaaggagct ctattcaaan tgacttagag ataaatgaga cttatataaa      1260
     ttaaatattc ctaaaactcc cagaaatata rraactaacc caaatgcttt tcaatttcac      1320
     atgatttggg taaatctttg gcaaataaaa ttagtttaat attgttggtt taattaaaaa      1380
     agggtatgtc ttctgagtta tcagcattaa atataataca agcatacata tttattctac      1440
     ytgggtttag cagtatgtta tctctactaa atatttaaag ttataaaaat tataaattta      1500
     acctaagaat gaatgaagaa gtgcagtatc catcacttca tgcatatcaa gcagagcagt      1560
     taaacaaaac ccatgtattt aacattttta ggtttttgtt ttgttgatgc ttgcctaaca      1620
     tgaacatgct ataaaattag ttaacagaaa aataacttga agtgatgttt tagccttgta      1680
     tgatgttata atatnatagc ctaaaaacag tttccaaata tttggtgatg tgaaacctta      1740
     gagttatgct aagttaaatt aagtaataga tattcattaa ataactagat catttctaag      1800
     gaagataaac tactaaaaca ctactaaatc taagtttatg tttatatact ttttggttct      1860
     tatttttata tggtacagag aggctaaaat atattcgagc ctcttaataa acatgaaaaa      1920
     ttgtattata aaaagtagnn tatacctnta aaaattatga gatggtatat tcataaaatt      1980
     tgctaatgtg cacatacaga atcctggtat atgacagaca gttcacaatt gcctacttcc      2040
     cagttttttt ctgtaaaaga aaagttattg atggttaaaa aatattatct atctatctat      2100
     atatataatt aaaactacta gaaacaataa gactgaggga aacaactttg tatgcaaaat      2160
     atgcnagggt agtaggttag atttttaata aagtatataa aatatgaaaa atgtgttttc      2220
     gttaaggaaa aaaagagtaa ttttgtccta aagtaaaatg agtgattgtt caaaatgaga      2280
     aaggggaaaa gtgtaggact aaagctaaat anatattttt taaaagttgt aaaagttgtg      2340
     gaaaaggaat tttatgtgta gtcaagatgc taatntattt ataaggattt tttaagctca      2400
     awtantgtac taatncanaa ctataatttg gtttccgctc tgttgaaagg acaaagtttt      2460
     cttaaantat tgtaaaagat ttttctttac cttttnaata attnacctag gaagcaaaga      2520
     ttttgtgtct tatcaagata aattccctgt gcttcatgtt gtctttatca tatntttaat      2580
     tacttttgaa agcaaatctt ttcaatttta aaaaagctag ggttattttt ctcgagtatg      2640
     ttacttccta tatttacctc tggaatcttt tattgccact ttgattaaat ggataaccaa      2700
     gtatatttca tagcgacccg taatcctatt taatcaagcg ttcaaacctt ttgacatttt      2760
     tgacaaactt cccaaaatca caattttaaa tgaagtcttt ttgacctcca acctaacttt      2820
     ganattttcc ggagggcctc tgaaaaatct ctaaagaact tgttctttca ccttgtaaaa      2880
     gagagatatt aaactaatta ggcttatttc atatgttaaa ttacatggga agcattgtca      2940
     aataagaaat ggtgcttaac cttctttgag ttatatttgt atgggtacct gttattaata      3000
     taagtgttcc agaaattgta tgaggttcct aaaaatttgt caataccctt gctcttnatg      3060
     atatgtccag cataattatg ttatcagtca taattgcagt tattatgtta aaatgytgta      3120
     tgccacagaa mtaaccaaat ttgcttgtca agtgaactct catcagatct ttaaccatga      3180
     ctattttaag tcttttgtca ctcacagaca gtttttgttt tactctgatt cttctctgaa      3240
     agcatcttac aakcagctac agggcaaagt gcttcatctt caaagaagct catgagaaag      3300
     acaggtactc tgaaatataa acctctgata ctttgcagac catgccactg gactgagtaa      3360
     gaatttccag acttgaatga agaaactgac gggttcatga aactgctaac ccaagatcaa      3420
     gcagaacaag aattaattac atgggactga atnaaccgat gaggatgatt tatagttttt      3480
     tatgtttttt gtttgaaaca ttgctggttc tttaatgttt tgttttccag attcaaggaa      3540
     actttttctt ttcttttaag ctatctataa cttacagcaa tttggtaaag tatacttttg      3600
     tgaacaaaaw tgaaacaatt acttttctct ctacctgatc cctccagaat tcggaaacta      3660
     ttagtgagta ttcttatttt catggcaata tagttatttg cataagttca gtaagaatct      3720
     gttctccttg taacaggaca caattggaaa cactggttat attaccaagg ctttgactag      3780
     aatgtcatat ttgggaatga tgggcataga attagcttta aggaactaaa gttgacttta      3840
     tggaaccaat gcttacaaag ccctcttgga aaaatcggcc tggtacctgg cttacasggt      3900
     tcccggcctt ncaggtgagt aaggaaagtc actttctggc aggcccaagg acctcaggat      3960
     attttgggga cctcaagaag agaggaattc acccaaatct atagatattg caggtgaagt      4020
     ctgatggcga aatccttggc ttggcttcat agccttgaga agcttttaaa agnccaatct      4080
     gagattcctt attaaaagtt ccagcaaagc aaaccttaaa agagcctatg tggtcagtca      4140
     ctattcttgc tgcatttatg taaataatca ggccaagtct aatgagatca gacttatttt      4200
     gcaaacaagt tagtcttact ntgattatct ttggtaaaaa ggggagtgag gtgactatag      4260
     agagaaattt tatgtttcag tggaaaacta tagcgcaccc attatcagat tctagtcctg      4320
     ttcattgttt ttggttttat tatctacctg caaactggac tggatcctga atttttctag      4380
     ttttctccaa tatctggcta caactctcca aactaatgtt tccaattttt ctcccaccct      4440
     tctggcttgg aatcactgaa aattaaaact gcccttttcc tgaagccctg caagctgaaa      4500
     ctggacgact tgatataaac ttcagagaaa tcaccacaac agatcatgtg tgggcagcct      4560
     tcatgacacc caaactgcaa accaggaaag cctgccagct gccactgcct acctcactcc      4620
     agctgaagat gcttcaagcc cagcatctag aaatcttatt gaccggctgc cctctggact      4680
     cagaaactga gtttccaant gttaaccttt gtttttattt tattttcata gaaactaaac      4740
     tcccctcatt aaaggcctga tggctcacac catccagsaa atatcctctg ctaccaagtc      4800
     ccagcagatg attcagctgg tccttaatga acaaaaggcm acccaacaag aaaatggact      4860
     tatattgttc aaaggaaaga agaatgtctc ttctttcctt raacaagagg agggactgac      4920
     aaagattctc tgcttg                                                      4936
//
ID   BTALUL2     repbase; DNA   ; MAM   ; 538 BP.
XX
AC   X05090;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Cow alu-like art2 repetitive sequence 1kb 3' to fetal globin
DE   gene.
XX
KW   SINE1; SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   Alu repetitive sequence; Alu-like repetitive sequence; BTALUL2;
KW   art2 repetitive sequence; Repetitive sequence.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-538
RA   Duncan H.C.;
RT   "Novel Alu-type repeat in artiodactyls.";
RL   Nucleic Acids Res 15(3), 1340-1340 (1987).
XX
DR   GenBank; X05090; Positions       1     538.
XX
SQ   Sequence 538 BP; 126 A; 144 C; 92 G; 176 T; 0 other;
     ttctgttcag tccagtggct cagttgtgta caattctttg caaccccatg gactgcagca        60
     tgccaggctt ccctgtccat caccaactcc tggagcttgc tcaaattcat gcccattgag       120
     ttggtgatgc cattcaacca tctcatcctc tgttatcccc ttctcttgcc ttcaatcttt       180
     cccagcatca gggtcttttc caatgagtca gttcttcaca tcacgtgtcc aaagtattga       240
     agcttcacgt tcggtatcag tccttccaat gaatattcag gactaatatc cttcaggttt       300
     gattggtttg atctccttgc agtccaaggg actctcagga gtcttctcca acatcacagt       360
     tcaaaagcat caattcttca gcggtcacct ttcttcattg tccaactctc acatccacac       420
     atgactactg gaaaaaccat agccttgact agatggacat ttgttgataa agtagtgtct       480
     ctgcttttta atatgctgtc tagatttgtg atagcttttc ttccaagaag caagcatc         538
//
ID   CarLTR1B2_LTR repbase; DNA   ; MAM   ; 546 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-546
RA   Smit A.F.;
RT   "CarLTR1B2_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 or 5 bp dups; 9-11% subst.
XX
SQ   Sequence 546 BP; 159 A; 151 C; 89 G; 147 T; 0 other;
     tgatgtggga aacaaaggca gaagaaaaat tattaaattt ccttactacc tacagcccat        60
     tgacaagtcc ttgaaacagg cagagtgaca ttcctctagg gactcaactg cctcgatgtt       120
     aatactttgc taagggcaaa aggcaatctt agcccgaccc ccaggatcct gtaagtctac       180
     tttaacatat aaaaattcct ttagaaattt cctttatctc taaacccccc aagatacgtg       240
     ttggcaatca tcccccaagc atatggccca ccgatataca tctgaagggt ctcatgacta       300
     aggttttatt agacggtaat aaatgacctt ttcccaacaa tagctagccc cctcaaggtc       360
     ctggaaacct tgcttccaaa attccttaga gacttacgct atccctaacc ccctcccaac       420
     ttgaaagtat ataatgggcc actcctcatg accccagtgc agctctttct gcccacgggt       480
     cctgtccccg tgctttaata aaaccacctt tttgcaccaa agacgtctca agaattcttt       540
     cttggc                                                                  546
//
ID   MLT1E       repbase; DNA   ; MAM   ; 593 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1E subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT1E;
KW   MaLR family; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
RN   [2]
RA   Smit A.F.;
RT   "MLT1E..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1E retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 21-22%.
CC   Pos 384-594 86% similar to MLT1D consensus 3' end.
XX
SQ   Sequence 593 BP; 139 A; 153 C; 154 G; 133 T; 14 other;
     tgtggcagac agactctaag gtggccccca tgatccccgc ctcctggtgt tcacgccctt        60
     gtgtaatccc ctccccttga gtgtgggtgg gacctgtgac ttgcttctaa ccaacagaat       120
     atggcaaagg tgatgggatg tcactcctgt gattacgtta catgattatg taagattccg       180
     tcttgncgnc antcttgctg agagnctctc ttgctggctt tgaagaagca agcngccatg       240
     ttgtgagnng ccanatgaga gggccacatg gcaagggcct ctaggagctg agggcggcct       300
     ccagccgaca gccagcaaga agctgaggcc ctcagtccna cagccgcaag gaactgaatt       360
     ctgccaacaa ccnnagtgag cttggaagcg gatccttccc cagtcgagcc tccagatgag       420
     ancncagccc tggctgacac cttgattgca gccttgtgag accctgaagc agaggaccca       480
     gctaagctgt gcccggactc ctgacccaca gaaactgtga gataataaat gtgtgttgtt       540
     ttaagccgct aagtttgtgg taatttgtta cgcagcaata ganaactaat aca              593
//
ID   BOVB        repbase; DNA   ; MAM   ; 3302 BP.
XX
AC   .
XX
DT   29-OCT-2001 (Rel. 6.09, Created)
DT   27-SEP-2005 (Rel. 6.09, Last updated, Version 2)
XX
DE   Bov-B RTE non-LTR retrotransposon - a consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Interspersed Repeat; Art2_BT; BDDF1;
KW   BOVA2; BOVB; BOVTA; BTALUL1; BTBDDF2; BOV2; LINE; MAR1; NLA;
KW   Repeat region; SINE.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Bovine Alu-like sequences mediate transposition of a new
RT   site-specific retroelement.";
RL   Gene 152, 261-264 (1985).
XX
RN   [2]
RP   1-3302
RA   Jurka J.;
RT   "Bov-B consensus sequence.";
RL   Direct Submission to Repbase Update (29-OCT-2001).
XX
RN   [3]
RP   1-3302
RA   Gentles A., Jurka J.;
RT   "Corrected classification for BOVB.";
RL   Direct Submission to Repbase Update (27-SEP-2005).
XX
CC   [2] (Consensus)
XX
CC   Over 92% similar to individual repeats. This version just
CC   corrects the classification of the element to the RTE clade (it
CC   was previously identified as LINE3/CR1 type).
XX
SQ   Sequence 3302 BP; 1152 A; 628 C; 817 G; 685 T; 20 other;
     caggggcggn gnnngggagg agcaacccca cgtccaagga gcngtggctg cgcaggngca        60
     ggagggccta gaggagctac tccatgttca aggtcaggag ggcggcngtg aggaganacc       120
     cctcgtccaa ggtaaggagc agtggctgcg ctttgctgga gcagccgtga agagataccc       180
     cacgnccaag gtaagagaaa cccaagtaag acggtaggtg ttgcaagagg gcatcagagg       240
     gcagacacac tgaaaccata atcacagaaa actctagcca atctgatcac actaggacca       300
     cagccttgtc taactcaatg aaactaagcc atgccgtgta gggccaccca agacggrtgg       360
     gtcatggtgg agagktctga cagaatgtgg tccactggag aagggaatgg caaaccactt       420
     cagtattctt gccttgagaa ccccatgaac agtatgaaaa ggcaaaatga taggatactg       480
     aaagaggaac tccccaggtc ggtaggtgcc caatatgcta ctggagatca gtggagaaat       540
     aactccagaa agaatgaagg gatggagcca aagcaaaaac aatacccagt tgtggatgtg       600
     actggtgata gaagyaaggt ctgatgctgt aaagagcaat attgcatagg aacctggaat       660
     gttaggtcca tgaatcaagg caaattggaa gtggtcaaac aggagatggc aagagtgaac       720
     gtcgacattc taggaatcag ygaactaaaa tggactggaa tgggtgaatt taactcagat       780
     gaccattata tctactactg tgggcaggaa tcccttagaa gaaatggagt agccatcatg       840
     gtcaacaaaa gagtccgaaa tgcagtactt ggatgcaatc tcaaaaacga cagaatgatc       900
     tctgttcgtt tccaaggcaa accattcaat atcacagtaa tccaagtcta tgccccaacc       960
     agtaatgctg aagaagctga agttgaacgg ttctatgaag acctacaaga ccttttagaa      1020
     ctaacaccca aaaaaagatg tccttttcat tataggggac tggaatgcaa aagtaggaag      1080
     tcaagaaaca cctggagtaa caggcaaatt tggccttgga atacggaatg aagcagggca      1140
     aaggctaata gagttttgcc aagagaatgc actggtcata gcaaacaccc tcttccaaca      1200
     acacaagaga agactctaca catggacatc accagatggt caacaccgaa atcagattga      1260
     ttatattctt tgcagccaaa gatggagaag ctctatacag tcagcaaaaa caagaccagg      1320
     agctgactgt ggctcagatc atgaactcct tattgccaaa ttcagactta aattgaagaa      1380
     agtagggaaa accactagac cattcaggta tgacctaaat caaatccctt atgattatac      1440
     agtggaagtg agaaatagat ttaagggact agatctgata gacagagtgc ctgawgaact      1500
     atggacggag gttcgtgaca ttgtacagga gacagggatc aagaccatcc ccatggaaaa      1560
     gaaatgcaaa aaagcaaaat ggctgtctgg ggaggcctta caaatagctg tgaaaagaag      1620
     agaagcgaaa agcaaaggag aaaaggaaag atataagcat ctgaatgcag agttccaaag      1680
     aatagcaagg agagataaga aagccttcct cagtgatcaa tgcaaagaaa tagaggaaaa      1740
     caacagaatg ggaaagacta gagatctctt caagaaaatt agagatacca agggaacatt      1800
     tcatgcaaag atgggctcaa taaaggacag aaatggtatg gacctaacag aagcagaaga      1860
     tattaagaag aggtggcaag aatacacaga agaactgtac aaaaaagatc ttcatgaccc      1920
     agataatcac gatggtgtga tcactsacct agagccagac atcctggaat gtgaagtcaa      1980
     gtgggcctta gaaagcatca ctacgaacaa agctagtgga ggtgatggaa ttccagttga      2040
     gctatttcaa atcctgaaag atgatgctgt gaaagtgctg cactcaatat gccagcaaat      2100
     ttggaaaact cagcagtggc cacaggactg gaaaaggtca gttttcattc caatcccaaa      2160
     gaaaggcaat gccaaagaat gctcaaacta ccgcacaatt gcactcatct cacacgctag      2220
     taaagtaatg ctcaaaattc tccaagccag gcttcagcaa tatgtgaact gtgaacttcc      2280
     agatgttcaa gctggtttta gaaaaggcag aggaaccaga gatcaaattg ccaacatctg      2340
     ctggatcatg gaaaaagcaa gagagttcca gaaaaacatc tatttctgct ttattgacta      2400
     tgccaaagcc tttgactgtg tggatcacaa yaaactgtgg aaaattctga aagagatggg      2460
     aataccagac cacctgacct gcctcttgag aaatctgtat gcaggtcagg aagcaacagt      2520
     tagaactgga catggaacaa cagactggtt ccaaatagga aaaggagtac gtcaaggctg      2580
     tatattgtca ccctgcttat ttaacttata tgcagagtac atcatgagaa acgctgggct      2640
     ggaagaagca caagctggaa tcaagattgc cgggagaaat atcaataacc tcagatatgc      2700
     agatgacacc acccttatgg cagaaagtga agaggaacta aaaagcctct tgatgaaagt      2760
     gaaagaggag agtgaaaaag ttggcttaaa gctcaacatt cagaaaacga agatcatggc      2820
     atctggtccc atcacttcat gggaaataga tggggaaaca gtggaaacag tgtcagactt      2880
     tatttttttg ggctccaaaa tcactgcaga tggtgactgc agccatgaaa ttaaaagacg      2940
     cttactcctt ggaaggaaag ttatgaccaa cctagatagc atattcaaaa gcagagacat      3000
     tactttgcca acaaaggtcc gtctagtcaa ggctatggtt tttccwgtgg tcatgtatgg      3060
     atgtgagagt tggactgtga agaaggctga gtgccgaaga attgatgctt ttgaactgtg      3120
     gtgttggaga agactcttga gagtcccttg gactgcaagg agatccaacc agtccattct      3180
     aaaggagatc agycctgggt nttcattgga aggactgatg ctgaagctga aactccaata      3240
     ctttggccac ctgatgcgaa gagytgactc attggaaaag actctgatgc tgggaaggat      3300
     tg                                                                     3302
//
ID   DNANA3_MD   repbase; DNA   ; MAM   ; 236 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   DNANA3_MD, a family of nonautonomous DNA transposon from
DE   Monodelphis domestica - consensus.
XX
KW   DNA transposon; Interspersed Repeat; DNANA3_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-236
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-236
RA   Gentles A., Jurka J.;
RT   "DNANA3_MD, a non-autonomous DNA transposon from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 344-344 (2005).
XX
CC   [2] (Consensus)
XX
CC   DNANA3_MD is a non-autonomous DNA transposon with 18 bp terminal
CC   inverted repeats. It is not clear if it is Mariner or hAT. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
SQ   Sequence 236 BP; 52 A; 75 C; 55 G; 54 T; 0 other;
     tagagcagca ttggtgaaga tgtggcacac gtgcagagcc ggcactcagg gagctgctcc        60
     attccccctc ttcccagcac ctgaggacat tttttgcatg ccccacccct ctgtccagct       120
     gcccaaagca agcactttct ccctcaactc tctctggtaa tgtgggggct cacagacagc       180
     ttgaatttgc cctctgggca ctcgaactcg gaaaaggttc accaatgagg ctctaa           236
//
ID   L1MD2       repbase; DNA   ; MAM   ; 1106 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MD2) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1M4; L1MD2; L1MD2 subfamily;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1106
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-1106
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   19%.
XX
SQ   Sequence 1106 BP; 409 A; 185 C; 231 G; 274 T; 7 other;
     ctngtatcta gaatatataa agaactctca aaactcaaca gtaaaaaaac aaacaatcca        60
     attagaaaat gggcaaaaga catgaacaga catttcactg aagaggatat acagatggca       120
     aataagcaca tgaaaagatg ttcaacatca ttagccatta gggaaatgca aattaaaacc       180
     acaatgagat atcactacac acctatcaga atggctaaaa taaaaaatag tgacaacacc       240
     aaatgctggt gaggatgtgg agaaactgga tcactcatac attgctggtg ggaatgtaaa       300
     atggtacagc cactctggaa aacagtttgg cagtttctta taaaactaaa catgcamtta       360
     ccatacgacc cagcaattgc actcttgggc atttatccca gagaaatgaa aacttatgtt       420
     cacacaaaaa cctgtacacg aatgttcata gcagctttat tcgtaatagc caaaaactgg       480
     aaacaaccca gatgtccttc aacgggtgaa tggttaaaca aactgtggta catccatacc       540
     atggaatact actcagcaat aaaaaggaac gaactattga tacacgcaac aacttggatg       600
     aatctcaagg gaattatgct gagtgaaaaa agccaatccc aaaaggttac atactgtatg       660
     attccattta tataacattc ttgaaatgac aaaattatag agatggagaa cagattagtg       720
     gttgccaggg gttagggatg ggggtggngn gggggaaggg aggtgggtgt ggctataaaa       780
     gggcagcacg agggatcctt gtggtgatgg aactgttctg tatcttgact gtggtggtgg       840
     ntacacgaat ctacacatgt gataaaattg catagaacta aatacacaca cacacacatg       900
     agtacacgta aaactggkga aatctgaata agatcggtgg attgtatcaa tgtcaatttc       960
     ctggttgtga tattgtacta tagttwtgca agatgttacc attgggggaa actgggtgaa      1020
     gggtacacgg gatctctctg tattatttct tacaactgca tgtgaatcta caattatctc      1080
     aaaataaaaa gtttaattta aaaaaa                                           1106
//
ID   ERV16_MD_I  repbase; DNA   ; MAM   ; 8003 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV16_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV13_MD_I;
KW   ERV16_MD_I; RNaseH.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-8003
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-8003
RA   Gentles A., Jurka J.;
RT   "ERV16_MD, yet another ERV1 retroelement from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 355-355 (2005).
XX
CC   [2] (Consensus)
XX
CC   Copies of this ERV1 element are ~91% similar to the consensus.
CC   The corresponding LTR is ERV16_MD_LTR. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV16_MD_I_1p"
FT                 /translation="KISTLADVPRNRISKISPWGRGSVLLPAPKPSESLYL
FT                 CCLSSTSICCLAFIVCLVCLSIFGPLIVLMGQQTSTPLDLVLAHFSVFKER
FT                 AQNLSLTVKKGRLVTYCDSKWPTLELGWPKGGTFNLGVISRLSSRILDPGP
FT                 SGHPDQAPYIIAWQDLALNPPLWLQPFLQPLQPSPSLPPTRQDSPQVLALQ
FT                 LQATTSPPSSPKKPVLQDSDNSPPDPSPPPYAPLYPDLNHLPGEAVAAASP
FT                 HSSPPASRTRGRGRAPTPDPETEKPSSTSAILPVRVMGPSVPGAPRLYQYW
FT                 PFSSSDLYNWKTQNPPFSQEPQKLIDLCESIMSTHSPTWDDCQQLLQVLFT
FT                 LEERERIFMEARKNVPNGVDGHPTTQQHLIEEAFPLTHPNWDFEQPEGRER
FT                 LRVYRQILMTGLRAAARKPTNLAKVNLVRQGADESPAAFLERLQEAFRLYT
FT                 PMDPLAETSRAAILLAFVNQAAPDIRRKLQKTEDLGNQSISDLLRIAERVF
FT                 NTRETPEDRAKRKDLEEKEERKRREEREEKRRQEERQKDHRCQREVARILA
FT                 ASLVQTPQTPPTGNPRPQGIPYRPVPQRLPGRRNGCFNCGKEGHWARNCPQ
FT                 PHRGGGGGSREKAKYPCPSRRGGLKRTGLVIPPRVLGNC"
FT   CDS           0..0
FT                 /product="ERV16_MD_I_2p"
FT                 /translation="VWPKTDPPVIVTLKPGATPIRIKQYPMTLEARRGITP
FT                 QINRLLGLGILVPCHSPWNTPLLPIRKPGGVEYRPVQDLREVNARVEDIHP
FT                 TVPNPYTLLSSLSPDLTWYTALDLKDAFFTLPLAPSSQPIFAFEWFNESTQ
FT                 TSGKLTWTRLPQGFKNSPTLFSEALAQDLQDFRTTHPEVTLLQYVDDLLLA
FT                 ARTSDDCEQATLALLKTLDHLGYRVSAKKASLVQREVKFLGYKLKGGHRWL
FT                 TQAMKDTILQIPCPSTARQLREFLGSVGYCRLWIPSFAEIAQPLYNLTRES
FT                 PDWEWTPQAEEAFQHLRRAMLEAPALTLPNPEKPFQLFIEEKHGVAKGVLT
FT                 QRLGPWNRPVAYLSKCLDPVAAGWPPCLRTVAAAALLTKDADKLTYGQSLI
FT                 LSTTHAIEGVLKQPPSRWFSHARLAHYQSLLLDTSRISFRVISSLNPATLL
FT                 PNPSPTNPAPIHDCGEVLAEAITARPGLQDEPLPNSDLILFTDGSSFLENG
FT                 HRLAGAAIVNAAGETVWAAALPKGTSAQKAELVALTQALRKAEGKRATVYT
FT                 DSRYAFATLHVHAPIYRERGFVTSGGAPVHNLPEIQDLLSAVWEPKAVAMV
FT                 HTPGHQKGDSLEAQGNRLADWAAKQAARGQVTILTTTTIPPPPDGEPQYTE
FT                 EDLTWIKSHLGQAEGAWYRDPEGNLLLPEALGQLLTTHLHHLSHLGDRKLA
FT                 QLLDKGKLKYRGRSRFLCRLVDSCTACQLLRAAKPDKHIGQRIRGQRPCQH
FT                 WEIDFTEIKPGKFGFKYLLVLVDTFSGWPEAFPTKTETALIVAKKLLEEII
FT                 PRYGLPETIASDNGPAFVSKITQGVAAALGTNWKLHCEYNPQSSGQVERMN
FT                 RTIKETLTKLVLETGIDWVTLLPLALFQARNTPGPSSLTPYEILYGSLPPI
FT                 LPTLPNPKGRNIPPELRPMLLSLAHFQKDLWPRVRDLFQPAPYDPHPYQPG
FT                 DWVWVKRHQKGSLQPRWKGPFVTLFVTPSALKVDGIGPWVHHSHIRKAEPL
FT                 DLNSLNVWVAHKHPTDPLKIKLTHHPSP"
XX
SQ   Sequence 8003 BP; 1929 A; 2308 C; 1832 G; 1883 T; 51 other;
     tttgggggct cgtccmtacg agaggtcccg ggagattcca aaggtttggg accacacagt        60
     ggtaaaggta cttgaatccc tgaagggaaa tctgagtgtg tctgagtgtg cttgtctgtg       120
     tgaatgttgt atggggaagg gagagtctgg atcacggcat acggctaagt ggctggcaga       180
     ttccgtgctc cccggattat agggagacag cctattgcca agtcggatcc ataaaggccc       240
     cctttcacct gtttctgagt gaggacctgc caagtacacg gttcctgagt cccgcgaggg       300
     gccgggccag aacggccggg aagcggaagt gttgtttcga gagattgaga gatttccctt       360
     ctagaggatt tgttaagagc gctcagtagg aactttgggg tggttagagg ccccccgccc       420
     aagttggact tgggacagga acttyggggt ggttagaggc cccccgccca agttggactt       480
     gggacaggga ccgggtccct gcaacagagg ttcgagtcct ctgaggaccc aatgagtcct       540
     aaggagcacc gttagacggt gagtgtgaaa aatttccact ctggcagatg tgccaaggaa       600
     taggatctct aagataagcc cctggggtcg ggggagtgta ctcttgcctg ccccgaaacc       660
     tagtgaaagt ctgtatctct gttgtttgtc ttctacgtct atttgttgtc tggcctttat       720
     tgtttgtctc gtgtgtcttt ctatatttgg gcctttaata gtcctcatgg gccaacaaac       780
     atctaccccc ttagatttgg tcctggctca cttctccgtc tttaaggagc gagcccagaa       840
     tctctccctc actgttaaga agggacgcct tgtcacctat tgtgattcca agtggcctac       900
     ccttgagctt ggatggccaa aaggaggcac ctttaacttg ggggtcatct cccgcctcag       960
     ttcccgtatc ctggaccccg gaccctctgg tcacccagat caggccccat atataatcgc      1020
     ctggcaggat ctggctctga acccaccttt gtggttgcag cctttcctac aacctttgca      1080
     accttcccct tccctacccc ccacaaggca ggactctccc caagttctgg ccctccaact      1140
     acaggcgacc acttctcccc cttcctcacc caagaaacca gttctacagg attcagacaa      1200
     tagcccccct gatccttccc caccccctta tgcccccttg tatcctgatc tgaatcatct      1260
     tccgggggag gcagtcgcag cagctagccc ccactctagt cccccggcaa gtcgcacaag      1320
     gggaagaggg agggcaccaa ccccagaccc tgagactgag aaaccttctt ctactagtgc      1380
     catcttacct gtgcgggtca tgggcccwtc agttccaggg gccccccgac tttaccaata      1440
     ttggccattt tcctccagtg acctctataa ttggaagacc caaaaccctc ctttttccca      1500
     ggagccccaa aaactaattg atctatgtga gtctattatg tctacccaca gtcccacttg      1560
     ggacgattgt cagcagcttt tgcaggtcct tttcaccctc gaagagcgtg aacgcatctt      1620
     catggaggcc cgcaaaaatg tgcctaatgg ggtcgacggc catcccacaa cccagcaaca      1680
     cctcatcgaa gaagccttcc ctctcactca tcccaattgg gattttgagc aacctgaagg      1740
     tagggagcgt ctccgtgtct atcgccagat tctcatgacc ggtctccggg ctgcggcccg      1800
     caagcccact aatttggcca aggttaattt agttaggcaa ggggcggatg aaagtccagc      1860
     agctttttta gaacgtctgc aagaggcatt ccggctgtat acccccatgg accccctagc      1920
     agaaactagt cgggctgcca tccttttagc ctttgttaac caagcggcac cagatattcg      1980
     ccgcaagctc cagaagacgg aggatttagg gaaccagagt atatctgacc tcttacgaat      2040
     tgcggagagg gtttttaaca cccgagaaac tccggaagat agggccaaaa ggaaggatct      2100
     ggaagaaaaa gaggagagaa aaaggagaga agagagggaa gagaaacgca ggcaggaaga      2160
     gaggcagaaa gaccatagat gccaaagaga ggtggcccgc atcctggcag ccagcctggt      2220
     tcagactcct cagactcctc caacgggtaa tccaagacct caggggatac cctatagacc      2280
     tgtccctcaa aggctaccag ggcggaggaa cgggtgtttt aactgtggca aagagggcca      2340
     ctgggcacga aattgccctc aaccccaccg gggggggggg ggggggtcga gagagaaggc      2400
     aaaatatcct tgcccttcaa ggagaggagg attgaagagg acgggacttg tcatccctcc      2460
     ccgagtcctg ggtaactgct aaagtggagg gaaaactggt taaatttttg gtagacactg      2520
     gagctgacaa atccgtcctt aggaaccccc ttggagatgt ttcttcgtgg gctagttggg      2580
     tccaaggggc cactggaacc cgccgctata attggactat gaaacgctcc attaatctag      2640
     gatctcatct ggtgtcccac tcttttctcg ttattccaga gagtcctgct cccttattgg      2700
     gccgggatct cttgcacaaa attggggccc acattcattt tacagactca gcagtttctg      2760
     tcacagacaa tactggtgcc cccttacagg tcttgacttt aaccctccca gaagaatacc      2820
     gcctctatga gcccctctac tcccaaccgc cagcttccat ccataaggat gtccagttat      2880
     gggtggatcg ggtccctggg gtatgggcag aactctctgg ggtaggtctg gccaaaaaca      2940
     gacccccccg tcattgtcac cttaaaacca ggtgcaacgc ctattcggat taaacaatac      3000
     cctatgaccc tggaggcccg aagaggtatt acccctcaga tcaacagact cctaggcttg      3060
     ggtatcctgg taccttgtca ctccccctgg aatactccct tactaccgat ccggaagccg      3120
     ggaggggtag aataccgccc agtccaggac ctaagggaag tgaacgctag agttgaggac      3180
     atccacccaa ctgtgcctaa cccctacacc ttgctcagct ctctctctcc cgacttgacc      3240
     tggtatactg ctctagacct gaaggatgcc ttcttcacct tacccctggc gccctccagt      3300
     cagccaattt ttgcatttga atggtttaat gagagtaccc agacctctgg gaaactcacc      3360
     tggactaggc taccccaggg gttcaaaaat agccccaccc tgttcagtga ggccttagct      3420
     caggaccttc aagattttcg aactacccac cctgaggtca ccctcctcca atatgtagat      3480
     gatcttcttt tggccgcccg cacctcagat gattgtgagc aagccactct agctctttta      3540
     aagaccttgg accacttagg ctaccgtgtg agtgccaaaa aggcatccct ggtccagcgg      3600
     gaagtcaagt tcctggggta taaactgaaa ggtggccata gatggctaac tcaagccatg      3660
     aaagacacaa ttctgcagat tccatgtccc tccacagcta ggcagctccg tgagttcctg      3720
     ggctctgtgg ggtattgcag attgtggata ccctcctttg ctgaaattgc gcagccctta      3780
     tacaatctga ccagagaatc cccagactgg gaatggaccc cacaggctga agaggccttc      3840
     caacaccttc gtagggccat gcttgaggcc ccagccctaa cacttccaaa ccccgaaaaa      3900
     cccttccaac tctttattga ggagaaacat ggggttgcaa aaggggtgtt aacccaaagg      3960
     ttagggccct ggaatagacc agtggcatat ctttcaaaat gccttgaccc cgtagctgct      4020
     gggtggcccc cttgtcttcg cactgtagcc gcggctgcct tgttaactaa ggatgctgac      4080
     aaactgactt atggacaatc tctaattctc tctaccaccc atgctattga aggggtattg      4140
     aaacagccac cgagccgctg gttttcacat gccagactgg cacattacca gtcactgtta      4200
     ttagatactt cacgcatctc attcagggtc atctcttcac tcaacccagc taccctactg      4260
     cccaatccat ctcctaccaa tccggcccct atacatgatt gtggagaggt tttagcagaa      4320
     gcaatcactg ctcgacccgg gttacaagac gaaccccttc caaacagtga cctaattcta      4380
     ttcacggatg gcagcagctt tcttgaaaat gggcaccgct tggctggggc ggccatcgtg      4440
     aatgcagcag gtgagactgt gtgggctgca gccttaccca aaggaacctc agcccaaaaa      4500
     gctgagttgg ttgccctaac gcaagccctt aggaaggcag aagggaaaag agccacagta      4560
     tatacggaca gcaggtatgc ctttgccacc ctgcatgtgc atgccccgat atatcgggaa      4620
     agggggtttg ttacctctgg tggagcccca gtccataatc ttcctgaaat ccaggatctc      4680
     ctatcggcag tttgggaacc aaaagcagtg gccatggtac atactcctgg gcatcaaaag      4740
     ggagactcct tggaagccca agggaacaga ttggcagatt gggcagccaa acaggcggct      4800
     cggggacaag tcacgatcct caccacaact accatcccac caccaccgga tggagaaccc      4860
     caatatactg aggaagacct tacttggatc aagagccacc taggacaagc agagggagct      4920
     tggtaccgtg accccgaagg gaatctgctc cttccagagg cattagggca gctccttact      4980
     acccacttgc accacctctc ccacctagga gaccgaaaac ttgcccaact cttggacaaa      5040
     ggcaaactca agtatagagg gagaagccga ttcctttgcc ggctggttga ctcttgcaca      5100
     gcatgccaac tcctccgtgc agccaaacct gacaaacaca ttgggcagag aataagggga      5160
     caaaggcctt gccaacattg ggaaattgac tttactgaaa taaaaccggg aaagtttggg      5220
     tttaaatatc tccttgttct agttgacacc ttctcaggat ggccagaggc atttccgact      5280
     aagaccgaaa ctgcattaat agttgcaaag aagcttcttg aagaaatcat ccctcggtat      5340
     gggttacctg agaccattgc ctcagacaat ggtccggctt tcgtgagtaa aattacacaa      5400
     ggggtggccg cagctctggg gacaaattgg aaattgcatt gtgaatataa cccccagagt      5460
     tcaggccagg tagagaggat gaatagaaca attaaggaga ctttaaccaa attggtcctc      5520
     gagactggca tagactgggt gaccctcctt cccttggcct tgttccaagc ccggaacacc      5580
     ccaggaccct catccttaac cccttatgaa atcctgtatg gttccctacc ccccattctt      5640
     cccacactcc caaacccgaa gggaagaaac atacctcctg aactacggcc tatgctgttg      5700
     agtctagcac attttcagaa ggacctttgg cctcgagtca gggacctctt tcaacctgcc      5760
     ccttatgacc cccaccctta ccaacctggc gactgggtgt gggttaaaag acatcagaaa      5820
     ggctccttac agccccggtg gaagggcccc tttgtaaccc tctttgttac cccctctgct      5880
     ctaaaagtgg acggaattgg tccttgggta caccactctc atatccggaa ggctgaacca      5940
     ctggacctga attcactgaa tgtctgggtg gcccataagc atccgacaga ccctttgaag      6000
     attaagctga ctcatcaccc atctccctga ccgtttccag gataagaaaa actccactat      6060
     ggcatccgcc ttcttccttg ccttcctcct caccccctgg atttccacra atctccgcaa      6120
     cccccatcaa ccctggaaat ggtccctgca gcagctggga cacctcaacg actattgcct      6180
     ccactacgac tcctgattct ccaagcttcc tctttacacc ttgccaagct ctcacctcca      6240
     ttarctgtga tggtccagga attaagcctt ttgtcctttt tgactattat ctgtgcccsg      6300
     cctcagcccc aggtagatcc tattgtaatt ctcccaatca attttattgt gcttactggg      6360
     gctgtgaaac tttggctacc grgtggcagg ccccagtccc tgattcctca ttactcctaa      6420
     cctggtcccc tcatggatgt aatcctcgta rtatgattcg atggtccaat ggaaggggcc      6480
     acatcggcca ggtagaggca gtagggaact gccagtwcct gaatatcacc gtaatcctaa      6540
     atccccagga tcagggctgg ctcctaggga aaacctgggg ttttagggta tatgtatcag      6600
     gtactgaccc aggggggctt ttcctgatca aaaaagaacc cctagccctc ccctcctacc      6660
     cggtgggacc caatccagtt ctccaacccc tagcccctgc cccttccttg cccttagccc      6720
     ctgctccctc cttgccccca sctcctgccc cttccttgcc ctcagctctt ggtccctcyg      6780
     tgaaacctat gtccccctta cctctgtcat actcacccgg gttagcctat cctacctcac      6840
     cccccaactt tgcccctatg gaccccctat tgcctcttct tgaagcagcc tatatgaccc      6900
     tgaaccrttc cttccccaay mttaccactg attgctggct ctgyctgagt ttcccaccct      6960
     ccctactatg atgctatagc cctcaatgct acttacaact acttccacag agatcasccc      7020
     ccacagttgt gaytggggag acgggaaggc tggcctgacc ctccaatcta tctcaggcca      7080
     agggrtctgt attgggaact ttaccctaay ctcttgcatg ccacaatgcc tccccttcca      7140
     grtacacaca gactccccgg ctaagtatct cattcctccc garggaaccc gatgggcttg      7200
     ctcgatkwct ggccttactc cctgtgtkgc caystctacc ttawctaaca acaaagagga      7260
     ctgtatcctg gtyatggtcc tacccaggat cctctatcac mgtggtgatc aattcctaac      7320
     ctactgggag caacacaaac acccccgcat tcggagggaa ccwgtcctrg cattgaccct      7380
     sgcatcyatt tttggtytag cagggttagg aacagggata rcctctttag tcctccacta      7440
     caacagatct cmagacctta catgttgctg taaatratga yttacgctgc attgaraaat      7500
     ccttggaggc cctagaraaa tccctgactt ccctctctga agtagtgctc cagaatcrca      7560
     ggggtctgga tctcctmttc ctccaagaag gaggcctatg tgtggcaytt aaggaagaat      7620
     gctgtttcta taccgaycac acagggattg ytagggaatc tctrgccgaa cttaagaara      7680
     gcctagacgc aaggcaaaaa gtcctgactt cccgcaaacc ctggtaycaa caaatcttya      7740
     atggatcccc ctggctcacc accctgatct ccacacttat aggacccttt gccattctca      7800
     tcctccttct ggcttttggg ccttgtatac tcaatcgctt ggtccagttt gtgaaagacc      7860
     ggattaacac agtccaactc atggtcctaa gacagcaata tctaccctta aatgacatca      7920
     atacccctac caggactcca ytcccatgag taggattcct cattttccta aaaagaagtg      7980
     gggaatgaag aaacagaytg ata                                              8003
//
ID   CarSat1     repbase; DNA   ; MAM   ; 500 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Satellite from carnivores.
XX
KW   Satellite; Simple Repeat.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-500
RA   Smit A.F.;
RT   "CarSat1 - Satellite from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   2 identical units in consensus.
XX
SQ   Sequence 500 BP; 126 A; 128 C; 128 G; 118 T; 0 other;
     ggcagtgtgg aactgcgagg gacaggcctt gtgctcaact ctcagaagta agtatgcctt        60
     gaagccagct ttcaactagc ctctctccta tgggagttag aagctagctc cattctaggt       120
     gaggaggttc catggaaagc gctgtattga actcggagac acaagccttc cgggcctgca       180
     gcttgccact tgcctctcac acagcttctg acaggcatct aacataagga tgttagaagc       240
     taagtccaca ggcagtgtgg aactgcgagg gacaggcctt gtgctcaact ctcagaagta       300
     agtatgcctt gaagccagct ttcaactagc ctctctccta tgggagttag aagctagctc       360
     cattctaggt gaggaggttc catggaaagc gctgtattga actcggagac acaagccttc       420
     cgggcctgca gcttgccact tgcctctcac acagcttctg acaggcatct aacataagga       480
     tgttagaagc taagtccaca                                                   500
//
ID   ERV23_MD_LTR repbase; DNA   ; MAM   ; 328 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   18-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV23_MD, young class 2 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERV23_MD_I.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-328
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-328
RA   Gentles A., Jurka J.;
RT   "ERV23_MD, a young class 2 endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 372-372 (2005).
XX
CC   [2] (Consensus)
XX
CC   The LTR corresponding to ERV23_MD_I. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 328 BP; 75 A; 113 C; 49 G; 90 T; 1 other;
     tgtatagaac ctgacaacag acaagaaata gtgcaaacat aacatgcctc ccttcctccc        60
     ttaaaacagg atgtctyccc aaactagttc cagatgtcag taaaggttgc aaaaccccct       120
     ccccctgggc ccctctaaca ccagatgtgc ctacttcctc ctacccttat cccctagcca       180
     cagtatatat ataccatgct tttgcctcaa taaacgactc ctctttgcat accatgtgag       240
     agctgtccgt gccttctttc tctctccccc tttccttctc tctctccccc tttccctctt       300
     aggggtcgta aggggctggt ccccgaca                                          328
//
ID   PRE1_SS     repbase; DNA   ; MAM   ; 246 BP.
XX
AC   Y00104;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   05-NOV-1997 (Rel. 2.1, Last updated, Version 3)
XX
DE   Pig SINE element PRE-1.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; PRE1_SS;
KW   Repetitive sequence; SSMIR1; SSPRE1; SSSINE1.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-246
RA   Singer S.D.;
RT   "PRE1_SS.";
RL   Direct Submission to Repbase Update (19-MAR-1987)Dinah S.Singer,
RL   Immunology Branch,N.I.H., Bldg.10,Room 48-17, N.I.H.,
RL   Bethesda,Md. 20892..
XX
RN   [2]
RP   1-246
RA   Singer S.D., Parent J.L., Ehrlich R.;
RT   "Identification and DNA sequence of an Interspersed Repetitive
RT   DNA Element in the Genome of the Miniature Swine.";
RL   Nucleic Acids Res 15, 2780-2780 (1987).
XX
RN   [3]
RP   1-246
RA   Frengen E., Thomsen P., Kristensen T., Kran S., Miller R.,
RA   Davies W.;
RT   "Porcine SINEs: Characterization and use in species-specific
RT   amplification.";
RL   Genomics 10, 949-956 (1991).
XX
RN   [4]
RP   1-246
RA   Jurka J., Goremykin V.;
RT   "PRE1_SS.";
RL   Direct Submission to Repbase Update (NOV-1997).
XX
CC   [4] (Consensus)
XX
SQ   Sequence 246 BP; 45 A; 63 C; 82 G; 52 T; 4 other;
     ggagttcccg tcgtggctca gtggttaacg aatccgacta ggaaccatga ggwtgcgggt        60
     tcgatccctg gccttgctca gtgggttaag gatccggcgt tgccgtgagc tgtggtgtag       120
     gtygcagacg cggctcggat ccsgcgttgc tgtggctgtg gtgtaggccg gcagctacag       180
     ctccgattmg acccctagcc tgggaacctc catatgccgc gggtgcggcc ctaaaaaaga       240
     caaaaa                                                                  246
//
ID   ERV17_MD_LTR repbase; DNA   ; MAM   ; 515 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV17_MD, a class 2 (HERVK) type endogenous retrovirus from
DE   Monodelphis domestica - consensus of LTR sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; Non-autonomous;
KW   ERV13_MD_LTR; ERV17_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-515
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-515
RA   Gentles A., Jurka J.;
RT   "ERV17_MD, a class 2 (HERVK) type endogenous retrovirus from the
RT   opossum M. domestica.";
RL   Repbase Reports 5(11), 358-358 (2005).
XX
CC   [2] (Consensus)
XX
CC   LTR corresponding to ERV17_MD_I. 4 bp target site duplications.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
SQ   Sequence 515 BP; 114 A; 103 C; 140 G; 157 T; 1 other;
     tgtagtcgag gcattgccgt aaaggcagaa ccgtaaggtt aagccctcct cttctccctg        60
     cttgggctgc atagtcaggg tcgtgggttg aactgtgtac gacctgccca gctgtgtgct       120
     caaggttgga atagcagcag agggaggatt gataaggtct gtgagaaaga aactgtaagg       180
     ttggagtagc cagcagaaga ctgataaggg ttgtgagaaa ttgtgagagg ctgtgggaaa       240
     gttgtttctc tgtctttgtt tggaatcttc tcggttcttc cctgtgcctg gcaggtaacg       300
     tcatgaattc ctatgaatct gcccaattat tggttcctgc tgttgctggg cggtaacatc       360
     atatcttcct gtggtgttaa cctatatatt gctttgtttg aactcaataa agggtcgtta       420
     tgcattttcc attagcgtcc attcgtcact ctgtatgttc gttaccccam ggcaaggtca       480
     caagaaggtt ggccaccttt tagatgagcc ttgca                                  515
//
ID   THER1_MD    repbase; DNA   ; MAM   ; 275 BP.
XX
AC   .
XX
DT   30-NOV-2005 (Rel. 10.11, Created)
DT   30-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   THER1_MD, a subfamily of old SINE element from Monodelphis
DE   domestica.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; THER1_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-275
RA   Monodelphis domestica sequencing consortium ;
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-275
RA   Gentles A., Jurka J.;
RT   "THER1_MD, a subfamily of MIR SINEs from the opossum M.
RT   domestica.";
RL   Direct Submission to Repbase Update (06-OCT-2005).
XX
CC   [2] (Consensus)
XX
CC   Similar to other mammalian MIRs. This consensus was reconstructed
CC   from the June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 275 BP; 80 A; 53 C; 63 G; 79 T; 0 other;
     aggtcagcta ggtggcacag tggatagagt actgggcctg gagtcaggaa gacctgagtt        60
     caaatctagc ctcagacact tactagctgt gtgaccctgg gcaagtcact taacctctgt       120
     ttgcctcagt ttcctcatct gtaaaatggg gataataata gcacctacct cccagggttg       180
     ttgtgaggat caaatgagat aataattgta aagtacttag cacagtgcct ggcacatagt       240
     aagtactata taaatgttag ctattattat tatta                                  275
//
ID   MARINERNA3_MD repbase; DNA   ; MAM   ; 519 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   MARINERNA3_MD; a probable non-autonomous Mariner element from
DE   opossum Monodelphis domestica.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; non-autonomous.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-519
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-519
RA   Gentles A., Jurka J.;
RT   "MARINERNA3_MD, a family of nonautonomous Mariner elements from
RT   M. domestica.";
RL   Repbase Reports 5(10), 322-322 (2005).
XX
CC   [2] (Consensus)
XX
CC   This sequence is probably a non-autonomous Mariner. Perfect 23 bp
CC   terminal inverted repeats, and TA TSDs. Average similarilty to
CC   the consensus is ~83%. The consensus was reconstructed from the
CC   June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 519 BP; 175 A; 91 C; 84 G; 165 T; 4 other;
     cagtaggacc tcattttata tgaactcaac acacacaaat tcaggtatat rcgattggca        60
     atcaaaaaaa taaaggcaga aaaatatata aaataaaaat ttttaattat atactaaatc       120
     tataccattt tcccaagygg tataaagtct cacagcagtt cacccaatca tgctcattct       180
     tactctgaga agcattagtg tgagtcatta cattgttttg tgccaaacat tagctcccac       240
     atcagtcttt gtccagagtt ctcacttgta acaagtcatg tccacatcag agcagtgctt       300
     ctctttgttt cattaatgct atttagttat taataatggc cccaaagtac aagagtagtg       360
     atgctggtag ctctgataag cctaagaaaa gtcataaagt gcctaggtat gttcatataa       420
     gaaatactta ttaaataatg gggtttgcta ttatgtryga ttttcaactt acatgaaggg       480
     tcttggaaca tattggtcat ataaaatgag gtcctactg                              519
//
ID   SINE1_SS    repbase; DNA   ; MAM   ; 131 BP.
XX
AC   AC129961; AF018149; AJ315771; AJ410870; AJ422131;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Sus scrofa SINE1 element - a consensus.
XX
KW   SINE1; SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   SINE retrotransposon; SINE1_SS; Repetitive element.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RA   Kostia S., Ruohonen-Lehto M., Vainola R., Varvio L.S.;
RT   "Phylogenetic information in inter-SINE and inter-SSR
RT   fingerprints of the artiodactyla and evolution of the bov-tA
RT   SINE.";
RL   Heredity 84 (Pt 1), 37-45 (2000).
XX
RN   [2]
RA   Kohany O., Jurka J.;
RT   "SINE1_SS consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 87%.
XX
SQ   Sequence 131 BP; 25 A; 28 C; 41 G; 32 T; 5 other;
     ggagttccct ggtggctcag ygggttaagg atctagtgtt gtcactgctg tggctcrggt        60
     cactgctgtg gtgcaggttt gatccctggc ctgggaactt ccacatgcyg yrggcatggc       120
     caaaaaaaaa a                                                            131
//
ID   SINEC_PV    repbase; DNA   ; MAM   ; 216 BP.
XX
AC   Z33497;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   P.vitulina DNA (clone Pvc3) for SINE retroposon.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; PVSINEC;
KW   retroposon; SINE repetitive sequence; SINEC_PV.
XX
OS   Phoca vitulina
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Pinnipedia; Phocidae; Phoca.
XX
RN   [1]
RP   1-216
RA   Coltman W.D.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (11-MAY-1994). Coltman D.
RL   W., Dalhousie University, Biology, Life Sciences Center, Halifax,
RL   Nova Scotia, Canada, B3H 4J1.
XX
RN   [2]
RP   1-216
RA   Coltman W.D., Wright M.J.;
RT   "Can SINEs: a family of tRNA-derived retroposons specific to the
RT   superfamily Canoidea.";
RL   Nucleic Acids Res 22(14), 2726-2730 (1994).
XX
DR   GenBank; Z33497; Positions       1     216.
XX
SQ   Sequence 216 BP; 49 A; 58 C; 45 G; 64 T; 0 other;
     taatgagggg tggcctggtg gctcattcgg ttaagtggct gccttcggtt caagtcattg        60
     atccctgggt cctgggatcg agccccacat ctgggctccc tgctcagcag aaagcctgct       120
     tctccttctc cctctgcctg ccactctgcc tacttgtgct ctctctctct gtcaaataaa       180
     taaaaatctt taaaaataaa taaataaata attgag                                 216
//
ID   MON1        repbase; DNA   ; MAM   ; 273 BP.
XX
AC   .
XX
DT   24-MAR-2000 (Rel. 5.02, Created)
DT   24-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   tRNA-related SINE element from monotremes.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; MIR; MIR3;
KW   MON1; THER1; THER2; tRNA.
XX
OS   Monotremata
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing elements
RT   with common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96, 2869-2874 (1999).
XX
RN   [2]
RP   1-273
RA   Jurka J.;
RT   "MON1.";
RL   Direct Submission to Repbase Update (MAR-2000).
XX
SQ   Sequence 273 BP; 67 A; 63 C; 71 G; 71 T; 1 other;
     agagaagcag cgtggcctag tggatagagc acgggcctgg gagtcagaag gacctgggtt        60
     ctaatccngg ctctgccact tgtctgctgt gtgaccttgg gcaagtcact taacttctct       120
     gtgcctcagt tacctcatct gtaaaatggg gattaagact gtgagcccca tgtgggacag       180
     ggactgtgtc caacctgatt agcttgtatc taccccagcg cttagaacag tgcttggcac       240
     atagtaagtg cttaacaaat accataatta tta                                    273
//
ID   CHR-1       repbase; DNA   ; MAM   ; 109 BP.
XX
AC   AB005033;
XX
DT   29-MAY-1998 (Rel. 3.04, Created)
DT   29-MAY-1998 (Rel. 3.04, Last updated, Version 1)
XX
DE   Physeter macrocephalus DNA for SINE retroposon CHR-1.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; CHR-1.
XX
OS   Physeter catodon
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Cetacea; Odontoceti;
OC   Physeteridae; Physeter.
XX
RN   [1]
RP   1-109
RA   Okada N.;
RT   "Direct submission.";
RL   DDBJ/EMBL/GenBank (1997). Norihiro Okada, Tokyo Institute of
RL   Technology, Faculty of Bioscience and Biotechnology; 4259
RL   Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226, Japan
RL   (E-mail:nokada@bio.titech.ac.jp, Tel:+81-45-923-1136,
RL   Fax:+81-45-923-1136).
XX
RN   [2]
RP   1-109
RA   Shimamura M., Yasue H., Abe H., Kishiro T., Goto M., Munechika I.,
RA   Okada N.;
RT   "Molecular evidence from retroposons that whales form a clade
RT   within even-toed ungulates.";
RL   Nature 388, 666-670 (1997).
XX
DR   GenBank; AB005033; Positions       1     109.
XX
SQ   Sequence 109 BP; 19 A; 29 C; 33 G; 22 T; 6 other;
     gggaattccc tggnggtcca gtggttagga ctcngtgctt tcactgcaga gggcccnggt        60
     tcaatccctg gtcggggaac taagatccca caagctgtgn ngcncagcc                   109
//
ID   YREP_BOV    repbase; DNA   ; MAM   ; 221 BP.
XX
AC   AF223676; Z31587;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Bovinae chromosome Y repeat region - a consensus.
XX
KW   Repeat DNA; YREP_BOV; Repeat region.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RA   Antoniou E., Oulmouden A., Skidmore J.C., Urdaci M.;
RT   "Isolation of a Y-specific bovine DNA fragment using
RT   minisatellite-related PCR primers.";
RL   Anim. Genet 27(3), 214-215 (1996).
XX
RN   [2]
RA   Antoniou A.E.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (25-MAR-1994)Antoniou E. A.,
RL   University of Reading, biochemistry and physiology, Reading,
RL   berkshire, United Kingdom, RG6 2AJ.
XX
RN   [3]
RA   Burzynska B.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (12-JAN-2000)Genetics, Institute of
RL   Biochemistry and Biophysics, Pawinskiego 5a, Warsaw 02-106,
RL   Poland.
XX
RN   [4]
RP   1-221
RA   Kohany O., Jurka J.;
RT   "YREP_BOV consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [4] (Consensus)
XX
CC   Average similarity to consensus 90%.
XX
SQ   Sequence 221 BP; 52 A; 56 C; 43 G; 70 T; 0 other;
     cctttttctt cttgaagatg catccctggt cactctgttc aaaatgttag aaatgactgg        60
     ctttgaactt gaaatcactc tgacaaagag agtttcagca tcctcattga catgctgcac       120
     tccaacaaag atgacctcag catcatcatt atcctcatct ctgggtttgc cctgcggtct       180
     ttgtctcggg ttcttgtgct tcctcacaca gaagagatgg g                           221
//
ID   SINEC1B1_CF repbase; DNA   ; MAM   ; 164 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Dog SINE element SINEC1B1_CF.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   SINEC1B1_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-164
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1B1_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 89%.
XX
SQ   Sequence 164 BP; 20 A; 54 C; 45 G; 45 T; 0 other;
     gggcagcctg ggtggctcag cggtttagcg cctgcctttg gcccagggcg tgatcctgga        60
     gtcccgggat cgagtcccac atcgggctcc ctgcatggag cctgcttctc cctctgcctg       120
     tgtctctgcc tctctctctc tctgtgtctc tcatgaataa ataa                        164
//
ID   HERVFH21I   repbase; DNA   ; MAM   ; 6529 BP.
XX
AC   .
XX
DT   15-MAY-1998 (Rel. 3.04, Created)
DT   07-OCT-1998 (Rel. 3.09, Last updated, Version 2)
XX
DE   HERVFH21I endogenous retrovirus flanked by LTR21s.
XX
KW   Endogenous Retrovirus; Interspersed Repeat; HERVFH retrovirus;
KW   HERVFH21I; HERVH; LTR21; internal sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-6529
RA   Kapitonov V.V., Jurka J.;
RT   "HERVFH21I..";
RL   Direct Submission to Repbase Update (MAY-1997).
XX
CC   [1] (Consensus)
XX
CC   HERVFH21I is an internal part of HERVH-related endogenous
CC   HERVFH21
CC   retrovirus flanked by LTR21s.
CC   However, it has different PBS site similar to Phe tRNA
CC   binding site in intracisternal A-particles from mouse
CC   and hamster genomes. (HERVH48I has similar PBS also).
CC   5 bp target site duplication.
CC   HERVFH2 has been active relatively recently, since
CC   there is a case of 91% identity between its left and right LTRs.
CC   Several LTR-retroelements including GAG-like parts of MER31I and
CC   MER66I from MER4I-group are distantly related to the HERVFH21I:
CC   ----------------------------------------------------------------
CC   start end start end identity
CC   ----------------------------------------------------------------
CC   HERVFH21I 404 977 HERVH48I 363 935 0.62
CC   HERVFH21I 782 945 MER31I 500 664 0.66
CC   HERVFH21I 982 1180 HERVH 1408 1586 0.63
CC   HERVFH21I 1384 1502 MER66I 2361 2479 0.61
CC   HERVFH21I 1503 1817 HERVH 1587 1905 0.63
CC   HERVFH21I 1819 1928 HERVH48I 1435 1546 0.85
CC   HERVFH21I 1929 2267 HERVH 2031 2361 0.62
CC   HERVFH21I 2490 2628 HERVI 2891 3029 0.66
CC   HERVFH21I 2634 3285 HERVH 2714 3356 0.64
CC   HERVFH21I 3192 3599 HERVH48I 2843 3243 0.62
CC   HERVFH21I 3610 3928 HERVH 3668 3990 0.65
CC   HERVFH21I 4017 4242 HERVH 4014 4237 0.68
CC   HERVFH21I 4643 5215 HERVH 4548 5120 0.65
CC   HERVFH21I 5338 5567 HERV9 7189 7398 0.65
CC   HERVFH21I 5582 5804 HERVH 6684 6906 0.67
CC   HERVFH21I 5910 6367 HERVH 7021 7476 0.64
CC   HERVFH21I 6369 6486 HUERS-P3 8748 8859 0.67
CC   ---------------------------------------------------------------
CC   The HERVFH21 consensus sequence (positions 1000-5200) encodes
CC   protein sequences 40-50% identical to the GAG, POL and RT
CC   proteins
CC   encoded by Moloney murine leukemia virus (MMLV). ENV protein
CC   sequence
CC   (positions 5725-6400) is similar to the ENV proteins from
CC   Mason-Pfizer monkey virus and MMLV.
XX
SQ   Sequence 6529 BP; 1666 A; 2258 C; 1023 G; 1564 T; 18 other;
     ttctggtgcc gaaacccggg aaggcgatag actctggctg ggactcactc tctctctctc        60
     tctctctctc tctctctctt cctctccctc ccctatcacc cctctcccgg ccaatctccc       120
     ccttcccgaa cctgctaaag acccaaagga tctcctaaat tctcccattg ttggcgacct       180
     catccaccat caaagcctcc accagggtga gtgaaaagag actgttgccg ttccccagaa       240
     cccttgacca tccatctctc cacttccaaa agacccagcg ctgggccaag ggcttcctcc       300
     cgtctctggg cctccaggag gccctcgatt cctccatttc agggatgcct gactcggcgg       360
     ttacctcctt tattccggac aagttccgtg ggaaagggga cgccctctcc caccgtcctt       420
     gtcatcagca gtctcttctt cccctaccct cccctcctcc attcactata ggagcctccc       480
     aatccactcc ttccaagacc accccgctgg gtgcctcctc cgcaatctca atgctctcgg       540
     cctccattca gaaatccgtt ctaagaggct tatctttttc aacgttctca gatacagaca       600
     acttttgcca tcgaaatggg aaatggtctg agattcctta tgttcaggct ttcttcactc       660
     tccgtaaccg cccttccctc tgtcagtcct gttctacttt ccaaatcctc ctcgcccgct       720
     ccaaacctga ctcgcctcct acccccctcc ccacagcccc agctgacgat tcctcttcct       780
     ttgaccctgc caattttccc cttccccgaa agcatcacga tcctccacca gagcatcctg       840
     atcctccacc gtatgtcccc actccagctc tacctttctc ccctcctctc tccaaccacc       900
     ctgcttctga ctctgggtcc tctctctctc cacccctcac cccctctttg gcccaagatg       960
     ctcagcaacc agctcccttg cttcctcttc aggaagcagc aggagtcgag aggatcgtcc      1020
     gtgtccacgt tcccttctcc ctctctgatc tctcccaaat taagaaacgt ctcaggtcct      1080
     tttcctccga tcctgacact tatatcaaaa agtttaaata ccttacccaa tcttacgaac      1140
     tcacttggca tgatctctac attatcctct cttataccct cctcccagaa gagaagaaaa      1200
     gatgtggctc gcagctcagg cacatgctga tgatcttcat cggcaagatc ctactaagcc      1260
     cgtagaggcc gctgcagtta cctgggaaaa gccttcccgg gagtaccaac ccacaaaccc      1320
     cagccgagca tctcataacc acatgattac ttgcctcatt gcaggcctta acaaagctgc      1380
     ccataaggct gtaaactttg aaaadcttaa agaaatctcc caaaggcchg acgaaaatcc      1440
     cgcccaattt cttttccgcc ttacagaggc cttccaaaaa tatacccacg ttgaccccgc      1500
     ctcccaggaa ggaactattg ttcttaacac tcagtttatc tcccaatcca ctcccaatat      1560
     ttggcgcaag cttcagaagc ttgacgacag ccctcaaacc ccacaacgag accttcttaa      1620
     tttagccttc aaagtcttta acaatcgtga tgaggaaaga aaggcaaaaa caggcagagt      1680
     ttcaaacgct tgcctttgcc atcaggggcc ctgcaggcca cgggacgcag ctccacatgg      1740
     aagcctccta gcaattcact tccacctggc gcctgtttca agtgcggcaa tgaaggccac      1800
     tggtccagac aatgccctaa cccagataag cccaccaggc cgtgcccctc tgcggaggac      1860
     gccactggaa gtcagactgt gagtggcccc cgcaaggact gcccccatcc cttcctgagc      1920
     cggccaaaac ctcctactca gatctcatcg gccttgccac tgaagactga cggtgccctg      1980
     gaacggacgc cccggcaact accatctctt catccgagcc aagggtaacc ctgatggtgg      2040
     caggtaggcc agtatattth tttttttcaa tactgggaca acctactctg ctttacctaa      2100
     tttttcagga cccaccgagt cctcccaggt ctctgttgta ggaattgatg gacaagtctc      2160
     caaaccccga gccacccctc cactcttctg ttccctgcac aatttttcct tcactcactc      2220
     tttcttagtc ctgccctcat gtccaactcc actcctaggc agagacatcc tttcaaaatt      2280
     ccacactact catgtcttcc tgtccaccgc aaccagagtc cctcctgctc ctctctgcta      2340
     gtccggcccc tgacccctct ccccagcacc cgctacccac ctctctcgtt aacccagtag      2400
     tgtgggacac caccacccct tccatagctg ctcaccagga ccccatcaaa atccagttaa      2460
     aagacccctc taaatttccc aacattcccc aataccccat ttccctaaca caccaaaaag      2520
     gcttacaacc catcataaac aagctctgct cacgccgtct tcttagacca acacgttctc      2580
     catataacac ctccatcctc cccgttaaaa aatctgacgg ctcataccaa ctcgttcagg      2640
     acctccgagc catcaatcag gctgtcctcc ctattcatcc cgtagtccct aacccctata      2700
     cacttctctc tctcatcccc tccaacacca cccactacac cgcaattgac ctaaaagatg      2760
     ctttctttac cattccccta caccccgatt cccaaaacct ctttgctttc acccggaccg      2820
     accccgacac cctccagtca caacaactca cgtggactgt cctccctcaa ggcttccagg      2880
     atagccttct tttcttcggg caagccctag cccaagacct tgcctccttg gatctttccc      2940
     ccagccgcct tcttcaatat ctagatgacc tccttctctg tagcccctcc ctaaaaaact      3000
     cccaaactca cactgccacc cttctgaatt tccttactaa taaaggctat agggtctccc      3060
     ctctaaagaa cagctttcca cctccatggt gacctactta ggaattcaac tttcccctgg      3120
     ggcccgggct atgaccccag cccgagcggc cttaatagat aaataatcta ccccgccctc      3180
     ttccaaaagc gaaatccttt ccttcctagg gctagcaggc ttctttagaa tatggattcc      3240
     caactttgcc ctcctagctc accccctcta taaagcggcc aaaggccctc tcaatgaacc      3300
     cctaaacycc tcacataaca tactccccag cttccgcgaa ctccaaaccg ctcttgtcac      3360
     tgcaccagct ctgtccttac ctaatatctc ccaacctttc actctctata ctgccaaaaa      3420
     ccgaggaata gccctcggtg tcttaggaca acagaaagaa aatcctcctt cctttgcccc      3480
     tgtagcctac ctctctaaac aactagacaa cacagtcaaa gggtggccaa cctgtcttaa      3540
     agtactagca gcggcagcca gttttagctc tagaaagcag gaaactaaca ttcagccaaa      3600
     ataccaccgt ctacagtcct cataatctac aagatctcct ctcctcccga gcattaagct      3660
     cccttcctcc ttcccggatt caattactcc atgccctctt tatcaaaaat cccaaattca      3720
     gtcttgccaa aagtgctccc ctcaacccag catccttact ccccgtatcc tcttcccttc      3780
     ctactcattc ttgcactgac atcctagacc acctgcagcc acactttcca aacatttcct      3840
     ccgagcctct caccaacccc aatgatcaac tattcataga tggctcctct tccgggccca      3900
     ctggctcccc caaaattgct ggatatgcag ttgtttccct tgaccaagta attgaagcta      3960
     agcccctacc tccaggaacc tcctcccaaa aagcagaact cataggctct caccagagcc      4020
     ctaacccttt ccaaaggcaa acgagtcaac atttatacag actccaaata tgcctatcac      4080
     attcttcatt cccacgccgc catctggcaa aagagaggat tccttactgc caaaggaacc      4140
     cccatcacta acggctcccc ttatttacca actccttcag gctgcacacc tcccaactaa      4200
     agcaggagtt atacactgtt gaggacatca aacaggttca gaaaggcctt tgagggaaca      4260
     gattaatctc aagaggrarc asraargcyr ayaaggcagc aragaacaga atctcaggag      4320
     ggatcagaaa tgaaatctca agagggaaca gaaaggccga tgaggcagca aaagaagcct      4380
     ccctttcttc tgcccctgcc tctctcctcc tcattacccc tgcaatccaa cccaagwact      4440
     ctcccactaa gaaaaggctt cactactaca acaaggaacc tccttccaag gggactggat      4500
     agtcaaaaat caaaagctcg tcctccccca agagcaaacc aaagaaattc tgacatctct      4560
     tcaccaatcc ttccatatcg gtgcgcgccc cctgtaccta ctcctttgcc cttatttctc      4620
     ctcyccccay ctattcacct cactaaaaga cataacctca aactgtcata tatgctctgt      4680
     tacttcctcc caaggggccc tccrctctcc atctattcct acacatcagc taagaggaac      4740
     actcccaggg gaggactggc aaatagactt cacccacatg cctcccgtca agagaacaaa      4800
     atttcttctt actcttatag acaccttctc tgggtgggta gaagcatttc ctacctcttc      4860
     agaaaaggcc gcagaagtct cccaaattct tgtaacagaa atcatcccta gatttggtct      4920
     ccctggctcc atacaatcag acaatggccc ctagcttcat ctcccaaatc actcaacagg      4980
     tttctcagtc ccttggcatc cagtggcgtc tccatatccc atgctggccc cagacatccg      5040
     gaaaagtcga aagggcaaat gggatcctta aggctcagtt aaccaaactc actcttgaag      5100
     tccaaaaacc atggacctcc cttttgccca tagcactgga gagcattaga gccagtccaa      5160
     aagcaccctc cttcctcagt ccatttgagt taatatacgg acgccctttc ctcttacaaa      5220
     acaggccccc ttctaactct cagctaggag aatacctccc aacagtctcc ctcatgagct      5280
     atctcctctg ccaacaagcc gaccagggcc ctcccaaaac cccacgaagg cccttgacac      5340
     ctcccacctc cttaacaaaa attcagggta ctgtaatggc cgacacctcc cctatttatc      5400
     cctcttctct tggctcccct ctccatacac catccttacc ctatacccac cacccgggac      5460
     ggtctccttc tcccaacatc caacaacact cccacatgca tcttagtgga cagaaaacgc      5520
     ttcctcttac actgggaaaa aaaaaaaaga acacaaaaag cctcccagct taaaccaaac      5580
     accctttaac aaccacttct gacagcagcc ctagctggga ccctaagagt atggatgatt      5640
     gagaataaca aaatagtaca tctttttagc atacacaacc agttccgtct accaagccaa      5700
     ggcatacttt tcctatgtga tacctcaact tatattgccc tcccctctaa ctggcgaggc      5760
     acctcagcac cctgcttttc ctcagtccaa aaatcactgt tgccccagga gaccagcccc      5820
     tactaatccc agttaatatc cctatctgac acgacsatac tatacaactc atacctctgt      5880
     tagtaaccct cagaataact acaggagttg gaactgggat tgtgggatta accacctccg      5940
     tttcctatta ccaatccctc tccaaagact tcacgaatag cttggaagag atagccaaat      6000
     ccattacaac tctccaatca caaataaatt cttagcagca gtagttcttc aaaaccgcag      6060
     aggcttagac ctgttcacag cgaaaaaagg agaactctgc ctttttctag atgaacagta      6120
     ttgcttttat cttaaccaat ctggcgtgat acaggatact gtaaaaagac taaaggaccg      6180
     agcacaaaaa attaaagaaa acgtcctctg atggccagcg tggccctcct ggtcttttag      6240
     tacctggttt ccatggctac tgcccctcct aggccctgcc gtaaccattt ttctctttct      6300
     agcatttggc ccttgtctct tacatctcct tacccagttt ttacagggcc gtgtcagagc      6360
     cttcacccac ggaacagtac aagacatgat gctactccaa gaataccgac ggctccagga      6420
     acagcagtcc ctactgtcca gccttccccc ccaaccatcg ccccttccca gcaagaagca      6480
     gccagaggac aacggcgccc ctcttctatt acctattaaa aggctggaa                  6529
//
ID   CarERV3_LTR repbase; DNA   ; MAM   ; 415 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-415
RA   Smit A.F.;
RT   "CarERV3_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   closely related to CarLTR1, 14% subst.
XX
SQ   Sequence 415 BP; 125 A; 105 C; 78 G; 107 T; 0 other;
     tgatgaggga tagaagcaga aaaatgttca cctttagccc agaaggctga cctatagcct        60
     gcatagttcc gataaggatc aaatacgtgc tggttgctac attcttaaag ggtctcatga       120
     ctgcctgtac atctcaccga tagttaatat cgagctgaat gataagcacc agagaaatct       180
     tgcgaaagta gttttatgag tagaaattcg aagaaaacat ttatgatcta atactccctg       240
     cacgtcccct cccccttgag cactaagcat ataaccacca gcttcataca gcaaaagtgc       300
     agctctttct gcccacgggt cctgtccccg tgctacttaa ataaacttac taagttgcac       360
     cgtaaaacgt ctcaagaatt ctttcttgac cgtcgcgctc aacgatcccg caaca            415
//
ID   LMER1       repbase; DNA   ; MAM   ; 352 BP.
XX
AC   .
XX
DT   22-1995 (Rel. 1.11, Created)
DT   15-OCT-1997 (Rel. 2.09, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   LMER1; Repetitive sequence.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RP   1-352
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit A.F.;
RT   "Identification of new medium reiteration frequency repeats in
RT   the genomes of primates, rodentia and lagomorpha.";
RL   Genetica 98, 235-247 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 352 BP; 60 A; 77 C; 66 G; 57 T; 92 other;
     gagactgmct gccywgmcca tgcrrgaggt wrrgagggca tggcamrcca tgcctccysg        60
     garggacycy ayrrcctgrc ygctggcagg tggcrggagc ccasrcacay yycycyccwy       120
     tsytgaaggc ctgtaattgt ccatcaggta aacwgctccc gtgtrgcyrk ryccawaksm       180
     cmwcmwgrar gctaccrtag gctaygtgay cttcaagmtg attgkagrag catwkcrgyr       240
     ccaayatyrs ctytatccta yagaatyagt rytgccctga aytagytacw cccyttctgc       300
     ctgcccttya rcarmststg cmkkstyrtt aataaagtgg ayryrtycac yg               352
//
ID   MER35       repbase; DNA   ; MAM   ; 290 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER35 repetitive sequence - a
DE   consensus.
XX
KW   MER35; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment..";
RL   Nature Genet 3, 137-145 (1993).
XX
RN   [2]
RP   1-290
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 290 BP; 98 A; 47 C; 90 G; 55 T; 0 other;
     gatgtggcgt ttgagtggac acgggggaag aaacaagtaa tatgaataac atggtgagac        60
     agaaagagtt gtggacagag ctgtgggaaa tatgagagat aaggagagag atactgaaaa       120
     gagcgttaag agagatgaag atagggtgtc tggcccatga aggccctcgt gaagagcaat       180
     gctgaataga tgaatgaacc tcaatgccca gcagtggtgg gatgaaaagg ggatcctgtg       240
     cagaaaccac actacccatc agagaagcaa ctctgctcgt ttccccttga                  290
//
ID   HERVR       repbase; DNA   ; MAM   ; 7392 BP.
XX
AC   D10032; D00088; N00088;
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   19-FEB-1997 (Rel. 2.01, Last updated, Version 1)
XX
DE   Baboon endogenous retrovirus (BaEV), internal part.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; HERVR;
KW   LTR4 related; capsid protein; endonuclease; glycoprotein;
KW   protease; reverse transcriptase.
XX
OS   Papio hamadryas
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Cercopithecidae;
OC   Cercopithecinae; Papio.
XX
RN   [1]
RP   1-7392
RA   Kato S., Matsuo K., Nishimura N., Takahashi N., Takano T.;
RT   "The entire nucleotide sequence of baboon endogenous virus DNA: A
RT   chimeric genome structure of murine type C and type D
RT   retrovirus..";
RL   Jpn. J. Genet 62, 127-137 (1987).
XX
DR   GenBank; D10032; Positions     556    7947.
XX
CC   CDS 430..2043
CC   /gene="gag"
CC   CDS 2020..5613
CC   /gene="pol"
CC   mat_peptide 2404..4434
CC   /product="reverse transcriptase"
CC   mat_peptide 4435..5610
CC   /product="endonuclease"
CC   CDS 5680..7371
CC   /gene="env"
CC   /codon_start=1.
XX
SQ   Sequence 7392 BP; 1991 A; 2113 C; 1675 G; 1613 T; 0 other;
     tgggggctcg tccgggattt gagaggcggc cagaggacac cggccccttt tccttttcgg        60
     cagaaaccgc gcggccccgg ccaccggtgg cggacggacg acgggacgac tcttgtgtgt       120
     agtcaggtac tttatttttg ttctgtcttt aatctctgag gtcggccaac cttcgtagga       180
     gtgtagaggg aggacagacg tgtcctggac cctcacactc cgaccccggg ggacgccccg       240
     gcggtcgtct ggaggaaggc tgatgacacc gtcagcctcc tcaaatctga aggcaggttc       300
     cccctgccat ctgaatcact tgtagtactt tggcgccatt ctctggccgc gcggctcatc       360
     tgtttttgtc tggtttgtgt tgttactgtt gtcttattta tatgtgtgta tgagcctaag       420
     gacgggacaa tgggacagac gctaacaact cctctatctt tgactttgac gcacttttca       480
     gacgtccggg ccagagccca caatctttcc gtaggagtcc gaaaaggacg atggcaaact       540
     ttctgctcgt ccgagtggcc cacccttcat gtcgggtggc cccgggacgg aacttttgac       600
     ctctccgtta ttttgcaggt taagacaaag gtaatggatc ctgggccgca tggtcacccg       660
     gaccaagtgg cctacatcat cacctgggag gatctcgtcc gaaatcctcc gccttgggtg       720
     aaaccctttc tccatacccc ttctacatcc aagtccaccc tccttgccct agaagtccca       780
     aagaaccgga ccctggatcc gcctaaaccc gtactcccgg atgagtcgca gcaagacctc       840
     ctcttccaag accctctacc tcatccacca cataatcccc tcctggaacc cccaccctac       900
     aactcaccct cgccccctgt cttgtccccc gtttctccta ccaccccttc tgcccccact       960
     ccttcctctc ttgtctcctc gtcgaccccg ccttcctctc cagccccacc tgaactcacc      1020
     cccaggaccc cgccacaaac cccccgtctc cgcctccggc gggccgaagg tcaggatggc      1080
     ccttccacct ggcaatcttc cctttttccc cttcgcacgg tcaaccgcac gatccagtac      1140
     tggccctttt ctgcctcgga cctctataat tggaaaaccc ataacccctc cttttcccaa      1200
     gacccccagg ccttgacctc gttgatagaa tcaattctcc tcacccacca gcctacctgg      1260
     gatgattgtc aacagctttt gcaggtcctt ctaaccaccg aagaaaggca gcgagtcctc      1320
     ctggaagccc ggaaaaatgt gccggggcct ggaggccttc caacccagct ccccaatgaa      1380
     atagacgagg gatttcccct cacccgcccg gactgggatt atgagacagc accgggtagg      1440
     gagagtctcc gaatctatcg ccaggctctg ttggcgggtc tcaagggggc aggaaaacgc      1500
     cccaccaatt tggccaaggt aaggactata actcagggaa aagatgaaag cccggcagcc      1560
     tttatggaaa gacttctgga agggtttcga atgtatactc catttgatcc agaagcacca      1620
     gaacacaagg ctaccgtggc catgtcgttc atagatcagg cagcactaga cataaaagga      1680
     aaactccaaa ggctagacgg gatccaaact catgggctgc aggaattagt aagggaggca      1740
     gaaaaggtat acaataaaag ggaaacccca gaagaaagag aagctaggct tataaaagaa      1800
     caggaagaac gggaagatcg gagagacaga aaaagagata agcatttaac caaaatcctg      1860
     gcagccgtag tgactgaaaa aagggcagga aagtcagggg aaacaagaag gcggcctaaa      1920
     gtagataagg accagtgcgc ctactgcaaa gagcgagggc attggatcaa ggactgcccc      1980
     aagcgtccta gagaccagaa gaaacccgcc cctgtcctca ccttaggtga ggacagcgaa      2040
     taggggtgtc agggctctgg agcccccccc gagccccggc taactctatc tgtagggggg      2100
     catcccacca ccttcttggt ggacacaggc gcccaacact cggttttgac caaggcaaac      2160
     ggacccctgt cctctcgtac atcttgggtc cagggggcaa caggaagaaa gatgcacaaa      2220
     tggactaacc gccggacagt taacctaggg caaggaatgg tgacacactc cttcttggtg      2280
     gtacctgaat gtccgtaccc ccttctgggg cgagatctcc taaccaaact cggagctcag      2340
     atccacttct ccgaggcagg ggcccaggtg ttagaccgag atggccaacc catccaaatt      2400
     ttgactgtgt ctctgcaaga tgaacaccgg ctttttgaca tcccggtcac caccagcctc      2460
     cctgatgtct ggttacaaga ttttccccaa gcttgggcgg aaacgggagg acttgggcgg      2520
     gccaagtgtc aagccccaat cataattgat ctaaagccca cagcggtgcc tgtatctatc      2580
     aaacaatacc ccatgagcct agaagctcat atgggcattc ggcaacacat tatcaaattt      2640
     ctagaacttg gagttttgcg accttgtcgc tcaccctgga atactcctct tctgccagta      2700
     aaaaagcctg gtacccagga ttacaggccc gtccaagatt tgagagaaat taataaaaga      2760
     actgtggata tccaccctac ggtccccaat ccttacaact tgctcagtac cttaaaacca      2820
     gactacagct ggtataccgt actggactta aaagatgcct tcttttgttt acccctggcc      2880
     ccccaaagcc aggaactatt tgcctttgag tggaaggacc ctgagagagg aatctcaggc      2940
     caattgacct ggactcgact tccccagggg ttcaaaaact ctcccactct cttcgatgag      3000
     gctctccaca gggacctcac cgacttccgg acccagcatc cagaagtgac cctgctccag      3060
     tatgtagatg acctcctctt ggcggccccc acaaagaaag cctgcacgca aggtactagg      3120
     catctactcc aggaactagg tgagaaagga taccgggcat ctgccaagaa ggcacaaatt      3180
     tgtcagacca aggtaactta cctggggtac atactgagtg agggaaaaag gtggctcacc      3240
     cctgggcgca tagagactgt ggctcgcatt ccaccgcccc ggaatcccag agaggtgcgt      3300
     gaattcctgg gaactgctgg gttctgtcgc ttgtggatac ccggttttgc tgaattggcc      3360
     gccccccttt acgcactcac caaggaaagc acccctttca cctggcagac agagcatcaa      3420
     ttggcttttg aggcactaaa aaaggcactc ttgtctgccc cagcccttgg gttaccggac      3480
     acctcaaagc cctttaccct cttcctggac gaaaggcaag ggattgccaa aggagtcctg      3540
     acccaaaaat tggggccttg gaaaagaccg gtagcatacc tgtccaagaa gctggaccct      3600
     gtggcggccg gctggccccc atgtcttcgt atcatggcag ccaccgctat gctggtcaaa      3660
     gactctgcta agttaaccct tgggcagcca ctgactgtta ttactccaca tactctagag      3720
     gccatagtgc ggcagccccc ggaccggtgg ataaccaacg cacgcctaac ccactaccag      3780
     gccctcttac tggacacgga ccgcgtccag tttggccctc cggtcaccct aaaccctgct      3840
     acgctgctgc cggtaccaga aaaccaacca agcccacacg attgtcggca agtactggct      3900
     gagacccatg gaacacgaga agaccttaaa gaccaagagc tcccagacgc ggatcacacc      3960
     tggtacacag acggcagcag ttaccttgac tcaggtactc ggagggcggg agcagcggta      4020
     gtagacggac acaataccat ttgggcacaa tcactacctc ctggcacgtc tgcacagaag      4080
     gctgagttaa tagcactaac caaggcccta gagctgtcca agggaaagaa agctaacatt      4140
     tatactgata gccgatatgc ctttgcaacg gctcatactc atggaagtat ctatgaaaga      4200
     agaggtctcc taacctcaga aggaaaggaa atcaagaaca aagctgaaat aattgcctta      4260
     ttaaaggccc tttttcttcc tcaagaagtg gctataattc actgccccgg gcatcagaaa      4320
     ggacaggatc cagtcgcagt aggaaacaga caggctgacc gagtggccag gcaagccgcc      4380
     atggcggaag tactgaccct agccacagaa cctgacaaca ccagccacat aactattgaa      4440
     catacttata cctccgaaga ccaggaagaa gcaagagcca taggggctac agaaaacaaa      4500
     gacactagaa actgggaaaa agaagggaaa atagtccttc cccaaaagga agccctggca      4560
     atgatccagc agatgcatgc ctggacacac ttgggtaatc gaaagctaaa attgttaatt      4620
     gaaaaaactg actttctaat cccaagggca agtacactca tagagcaagt gacatctgcc      4680
     tgtaaggtct gtcagcaggt aaacgctggg gctacccgag tgccagcagg gaaacggact      4740
     cgtggtaacc gcccgggagt ctattgggaa atagacttca ctgaagtaaa acctcactat      4800
     gctgggtata agtacttact agtgtttgta gatacctttt caggatgggt agaagccttt      4860
     cccacccggc aagaaacggc acacatagta gccaagaaga tcctagaaga aatctttcct      4920
     agatttggac ttcccaaggt aattgggtca gacaacgggc cggccttcgt ttcccaggta      4980
     agtcaggggc tagccaggat actggggatt aattggaaat tgcattgtgc ttatagaccc      5040
     cagagctcag gacaggtaga gagaatgaat agaacaataa aagagaccct tactaaattg      5100
     accttagaga ctggcttaaa agattggaga cgcctcctat ctctagctct attaagagcc      5160
     cggaatacgc ctaaccgctt tgggctcact ccatatgaaa tcctctatgg aggacctccc      5220
     cctttgtcaa ccttacttaa ctccttttct ccctccaatt ctaagactga cctacaggcc      5280
     cggctaaaag gactacaagc agtacaggcc caaatctggg cccccttggc agaactgtac      5340
     cggccaggac attcgcagac cagccacccc ttccaggtgg gggactccgt ctacgttaga      5400
     cgacaccgtt ctcagggact ggagcctcgg tggaaaggac cctacattgt tctcctgacc      5460
     acacccacag ccataaaggt tgacggaatc gccacgtgga ttcacgcatc ccacgccaag      5520
     gctgctccag ggacgcctgg accgacgtcg tccggaactt ggagactccg ccgctccgag      5580
     gaccccctta agataagact ctcacgcact tgacttctta cttgcccttg tcctcctacc      5640
     ccgcgccgta catagcagta acccctcata tagtccaaga tgggattcac aacaaagata      5700
     atcttcttat acaacctagt actggtctac gcggggtttg acgaccctcg caaagccata      5760
     gaactagtac aaaagcgata tggccgacca tgcgattgca gcggaggaca agtgtccgag      5820
     cccccgtcag acagggtcag tcaagtgact tgctcaggca agacagctta cttaatgccc      5880
     gaccaaagat ggaaatgtaa gtcaattcca aaagacacct ccccaagcgg gccactccaa      5940
     gagtgcccct gtaattctta ccagtcctca gtacacagtt cttgttatac ctcataccaa      6000
     caatgcagat caggcaataa gacatattat acggctactc tgctaaaaac acaaactggg      6060
     ggcaccagtg atgtacaagt attaggatcc accaacaaac ttatacaatc tccctgtaat      6120
     ggcataaaag ggcagtctat ttgctggagc actacagctc ctatccacgt ctctgatgga      6180
     ggaggtccat tagacaccac aagaattaaa agtgttcaga gaaaactgga agaaattcat      6240
     aaagccctat atcctgaact tcagtatcac cctttggcca tacctaaggt tagagataac      6300
     ctcatggtcg atgcccagac tttaaacatt ctcaatgcca cttacaactt actcctaatg      6360
     tccaacacga gcctagtgga cgactgttgg ctttgtttaa aattaggtcc ccctactccc      6420
     ctcgcaatac ctaacttcct attatcctac gtgactcgct cctcggataa tatctcttgt      6480
     ttaataattc ccccccttct agttcaaccg atgcagtttt ccaattcatc ttgcctcttt      6540
     tccccctcct acaacagtac agaagaaata gatctaggcc atgttgcctt cagcaactgt      6600
     acctccataa ccaatgtcac cggtcccata tgcgctgtaa atggttcggt ctttctctgt      6660
     ggcaataaca tggcatacac ttatctaccc acgaactgga cggggctttg cgtcctagca      6720
     actctcctcc ccgacattga catcattccc ggagatgaac cggtccccat ccctgctatt      6780
     gatcatttta tatatagacc taaacgggcc atacagttta ttcctttact agcagggcta      6840
     gggatcaccg cagccttcac aacaggagct acaggcctag gtgtctctgt gacccaatat      6900
     acaaaattat ctaatcagct aatttctgat gtacaaatct tatctagcac catacaagat      6960
     ctgcaagatc aagtagactc attagccgaa gtggttctcc agaacagaag ggggctagat      7020
     ctacttacag cagaacaagg aggaatctgt ttagccctgc aagaaaaatg ctgcttttat      7080
     gttaacaagt cagggattgt gagagacaaa ataaaaacct tacaagaaga actagaaaga      7140
     cgtagaaaag atctagcttc caacccactt tggactgggc ttcaagggct cctcccttac      7200
     ctcctgccct ttcttggccc tctacttacc ctcctgctct tactcaccat tgggccgtgc      7260
     atttttaacc gtctaaccgc ttttattaat gataagttaa acataataca cgctatggtg      7320
     ctaacccaac agtatcaggt gctcagaacc gatgaagaag ctcaagattg agcctctaag      7380
     acacaagaaa ag                                                          7392
//
ID   SAT_EC      repbase; DNA   ; MAM   ; 225 BP.
XX
AC   .
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Equus caballus satellite DNA, a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT_EC; repeat unit; satellite DNA;
KW   tandem repeat.
XX
OS   Equus caballus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Perissodactyla; Equidae; Equus.
XX
RN   [1]
RA   Wijers R.E., Zijlstra C., Lenstra A.J.;
RT   "Rapid evolution of horse satellite DNA.";
RL   Genomics 18(1), 113-117 (1993).
XX
RN   [2]
RA   Kohany O., Jurka J.;
RT   "SAT_EC Consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 98%.
XX
SQ   Sequence 225 BP; 57 A; 57 C; 62 G; 49 T; 0 other;
     gatcaggcct gcaaagaaac tgcgtttcac aggcctttgg aagagatgtt cccggtaggc        60
     tgtaagagca ctgtgcagag cgagttgttt cttagcttcc caaagagctg gaagcaagat       120
     gctgtggggc ccaactcgcc ctttggaaag aagcctgcac gttgtgcctt tcagctctag       180
     ggcaaagtag cacacccaga gcagaagtcc tacttcagcc agatc                       225
//
ID   TAL-1       repbase; DNA   ; MAM   ; 224 BP.
XX
AC   AB108790; AB108813; AB108816; AF195918; AF195919; AF195920;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   SINE like sequence from Talpidae - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE-like;
KW   TAL-1.
XX
OS   Mogera robusta
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Talpidae; Mogera.
XX
RN   [1]
RA   Nakata A., Kuro-o M.;
RT   "Analysis of the phylogenetic relationships in the Japanese
RT   Insectivora based on the DNA sequences of the short interspersed
RT   repeated elements (SINEs).";
RL   Unpublished.
XX
RN   [2]
RA   Nakata A., Kuro-o M.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (18-APR-2003)Akifumi Nakata,
RL   Department of Biofunctional Science, Faculty of Agriculture and
RL   Life Science, Hirosaki University; 3 Bunkyo-cho, Hirosaki, Aomori
RL   036-8156, Japan (E-mail:nakata@cc.hirosaki-u.ac.jp,
RL   Tel:81-172-39-3591).
XX
RN   [3]
RA   Borodulina R.O., Kramerov A.D.;
RT   "Short interspersed elements (SINEs) from insectivores. Two
RT   classes of mammalian SINEs distinguished by A-rich tail
RT   structure.";
RL   Mamm. Genome 12(10), 779-786 (2001).
XX
RN   [4]
RA   Kramerov A.D., Borodulina R.O.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (18-OCT-1999)Evolution of Eukaryotic
RL   Genomes, Engelhardt Institute of Molecular Biology, 32 Vavilov
RL   St., Moscow 117984, Russia.
XX
RN   [5]
RA   Kohany O., Jurka J.;
RT   "TAL-1 consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [5] (Consensus)
XX
CC   Average similarity to consensus 86%.
XX
SQ   Sequence 224 BP; 37 A; 78 C; 48 G; 55 T; 6 other;
     cctccctggt ggcacagtgg rttgagtgtc agcactgcaa agctgtgtgc agccactgca        60
     grrtgasttc aatccctggc cagggagcaa cccacatggy gcagcagacc tctcctgtct       120
     crcccgctgc tcccctcagc agtgtatttc attatctgcc tgttctgctc cccactctgt       180
     ctctggtgaa tcctctcacc ccccgcaccc agctcttgta tgaa                        224
//
ID   SSRS2       repbase; DNA   ; MAM   ; 1258 BP.
XX
AC   X16513;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Pig repetitive DNA.
XX
KW   SAT; Satellite; Simple Repeat; Repetitive DNA; SSRS2;
KW   satellite DNA; tandem repeat.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-1258
RA   McGraw R.;
RT   "SSRS2.";
RL   Direct Submission to Genbank (25-AUG-1989)McGraw R., University
RL   of Georgia, Dept of Physiology and Pharmacology, Riverbend
RL   Research Laboratories, Athens, Georgia, USA 30602..
XX
RN   [2]
RP   1-1258
RA   Akamatsu M., Chen Z., Dzuik J.P., McGraw A.R.;
RT   "A highly repeated sequence in the domestic pig: a gender neutral
RT   probe.";
RL   Nucleic Acids Res 17, 10120-10120 (1989).
XX
DR   GenBank; X16513; Positions       1    1258.
XX
SQ   Sequence 1258 BP; 320 A; 344 C; 251 G; 343 T; 0 other;
     gaattcactg cattcatttg ggatccattg cgccacgatg catggaatcc atcgcgttca        60
     atcaaaatcc attgcaccac actgcatgga atccactgca ttctctcgag atccattggg       120
     ccacgctgca tcgaatccac tgcattcaat cgggatccat ttagccacgc tgcatggaat       180
     acactgcgtt caatcgggat gcatttaacc atgctgcatc gaatccactg cattcagtga       240
     cgctgcatgg aatccactgc attcaatcgg gatgctttgg gcctcgctgc ataaaatcca       300
     ctgcatttaa tcgggatgca ttgggcctca ctgcatggaa tctactgcct tcaatcatgc       360
     tgcatggaat ccactgcatt caatcaagct gcataaaatc ccctgcattt aatagggttc       420
     aacttctcca tgctgcatgg aatccactgc attcaatcat gcttcattgc aaccagtgca       480
     ttcaatcggt accatagggc cacgcttcat ggaatccact gcattcaatc atgcttcatt       540
     gcaacccctg cattcaatcg ggaaccattg ggccatgctg catggaatcc actgcattca       600
     aacacgctgc atggaatcca ctgcattcaa tcgggatgct ttgggccatg ctggataata       660
     tccactgcat tcaatcggga ttcattggcc tcactgcctg gaatccactg cattcaatca       720
     tgctgcatgg aatccactgc attcaatcat gctgcataaa atccactgca ttcaataggg       780
     ttccatttct tcacgctgca tggcatacac tgcattcaaa cacgctgcat ggaatccact       840
     gcattcaatt gggatccatt gggcacgctg catggaatcc actgcattca tcgggatcca       900
     tttaaccccg ctgcatggaa tgcacttcgt tcaatcggga tgcattttac catgctccgt       960
     ggttttcact gcattcaatc ataatgcatg gaaaccactg catcaatcgt gatgcatttt      1020
     accatgctgc atggaatcca ctgcattcag tgatgctgca tggaatgcac taccttcaat      1080
     cgggatgctt tgggccatgc tgcataaaat ccactgcatt taatcgggat gcattgggcc      1140
     acgctccatg gaatcaactg cattcaatca tgctggatgg aatccactgc attcaaccgg      1200
     gatgcatttt accatgctgc atggaatgta ctgcattcaa tcacgctgca tggaattc        1258
//
ID   BMSAT1      repbase; DNA   ; MAM   ; 422 BP.
XX
AC   X52706;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Blue whale satellite repetitive DNA.
XX
KW   SAT; Satellite; Simple Repeat; BMSAT1; Repetitive sequence;
KW   satellite DNA.
XX
OS   Balaenoptera musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Cetacea; Mysticeti;
OC   Balaenopteridae; Balaenoptera.
XX
RN   [1]
RP   1-422
RA   Arnason U., Widegren B.;
RT   "Composition and chromosomal localization of cetacean highly
RT   repetitive DNA with special reference to the blue whale,
RT   Balaenoptera musculus.";
RL   Chromosoma 98, 323-329 (1989).
XX
DR   GenBank; X52706; Positions       1     422.
XX
SQ   Sequence 422 BP; 105 A; 56 C; 141 G; 120 T; 0 other;
     tagatattaa acctatcccg ctctctagat accccttagc acgtaaagga atattatttg        60
     gggatccagc catggagaag agtttagaca ctaggataag ataaggaaca cacccattct       120
     aaagaaatca cattaggatt ctctttttaa gctgtttctt aaaacactag tgcttaggaa       180
     atctattgga ggcagaagca gtcaagggta gcctagggtt agggttaggc ttagggttag       240
     gcttagggta cggcttaggg tacgggttcg gggaggggtt cgggtacggc gtagggtatg       300
     ggttagggtt agggttaggg ttagtgttag ggttagggct cggtttaggg tacggtttag       360
     gattagggta cgtgttaggt ttagggtagg ggttagggtt agggtacgcg ttagggttag       420
     gg                                                                      422
//
ID   Kanga1      repbase; DNA   ; MAM   ; 1898 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner DNA transposon from placental mammals.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; HSTC2; Kanga1.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1898
RA   Smit A.F.;
RT   "Kanga1 - Mariner DNA transposon from placental mammals..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   (MER104) 25%.
XX
SQ   Sequence 1898 BP; 605 A; 343 C; 416 G; 525 T; 9 other;
     ccatatttca tcgattctaa gatgcacatt ttttcacatt ttaacatctc tgaaatcggg        60
     atgcatctta caatcgatgg catcttacaa tcgctgtcgg ccaggcggca gtcgtgacgt       120
     agttgtcatt gcctgcacgt gtgcgaactt ggtcatagct gttcatattg tcatcacttc       180
     aattgagtta tgtgcattgt tggtactaca cgtgttgagt ttaattgcca tttaaaatgt       240
     cttcaaaaag attacactat gattcggcat tgaaatgaaa agttattgtg tacacagaaa       300
     ggcacggaaa cagagcagcg gggcgtaaat ttgatattag tgaagcaaat attcgtcgtt       360
     ggaggaatga ccgcaattcc atattttctt gcaaagcaac aaccaagtgc tttatgggac       420
     ctaagaaagg aagataccca caagtagatg aagctgtgtt acgttttgtt actgagatac       480
     gtgcaaaagg attgcctatc acacgccaag caatgcaact gaaggcagga gaaattgcca       540
     aatccctcgg aatagatgaa agaaatttca aagcaatgag aggctggtgt gaccgattca       600
     tgcgtcgtgc aggactatcg ttaaggcatc aaacatcaat ttgtcagaaa cttcctgctg       660
     actttgaaca gaagctgctt aacttccagc gacatgtgat tcaattgagg aaaaaacgaa       720
     actatgagtt tagtcaaata ggaaatgctg atgaaaccnc ggtgttcttc gacatgcctc       780
     aaaattatac tgtcaatgct aaaggtgcta aagagatcaa gatcatgagc acaggttatg       840
     aaaagcagca tatcactgtg atgctatgca taattgccga tggccaaaag ttgtcgccat       900
     atttaatttt aaactacaaa ataattccta agaatgaaat cttccccaaa gatgttactg       960
     tgcttnccan taaacatgga gatatagacg tcagntgagc tgatgaagga gtggctaaag      1020
     tcatctggaa ttggatgtcc aggagcccta cgtaacccac caagtgtgtt ggttcttgat      1080
     gcatttcatg gacgtgtatc tgaacagtta aagaatangt tcactgaaaa gtaanacaag      1140
     ttggtggttg atccatnaac tgcaacccct caanattcca gtcagcaaac catttaagga      1200
     ccatttgagg aaggaatatg agtcctggtt gttgtctgaa aaccttccgt tgacaccttc      1260
     tggtaagatc aagaaagcgc cagcatcaaa acttgcagaa tgggtgtcag cggcttggaa      1320
     gaaaatcccg gagacaatag tggagcactc ttttaactcc taggaaccaa atggttgtgg      1380
     gnaagggagg gagaaggcag tgaatcagac atgtttagca acattcccga agcgggagtc      1440
     aaaagtaggc tagctctaca taattgcaaa gccggctcaa gagcccagca ccaatggctc      1500
     tcagttcttt tatggattct tttaagaaat gctgcatcac caacgctctt gatggcacag      1560
     aggatgatat tgtgtggaaa aacacggaca tcgatgactc tgagtcgaaa agtgattcag      1620
     aagagttgga ctctgaatgt gaagaagttt taggaatacc ttaaccaatt tatttcgctt      1680
     atattttcct ttttatgtat gcacaagagt gatatatgat aaaaatctgt gtctaaataa      1740
     gtctaaaaga gctctttcaa taagtataaa ataaaaattc taatgataag gaaagcattg      1800
     tgtcatagtt taattggcag cgttttttct ttcttagtgg tacataaaat aatggtgcgt      1860
     cttacaatcg atggcatctt agattcgatg aaatacgg                              1898
//
ID   OSSAT1      repbase; DNA   ; MAM   ; 698 BP.
XX
AC   X03117;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Sheep satellite II DNA repeat unit.
XX
KW   SAT; Satellite; Simple Repeat; direct repeat; OSSAT1;
KW   Inverted repeat; Repetitive sequence; satellite DNA.
XX
OS   Ovis sp.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Caprinae; Ovis.
XX
RN   [1]
RP   1-698
RA   Buckland A.R.;
RT   "Sequence and evolution of related bovine and caprine satellite
RT   DNAs.";
RL   J. Mol. Biol 186, 25-30 (1985).
XX
DR   GenBank; X03117; Positions       1     698.
XX
SQ   Sequence 698 BP; 116 A; 239 C; 227 G; 116 T; 0 other;
     actccctggg cgcccagaac ctgcctcaca cacgtagctt ccctagcgct ctcctcccca        60
     gcagagacgt gtgcagctgg ttggggcctg cctgcgtgcc tgggctccct cccagagacc       120
     cagctcaggg caagcagccc ctgagccaag acctgcagga ggcgcagagc ccacccacct       180
     ggaagccgag tgaacggctg gcggggaggc gagcctcctc gagggaagaa gaggcagccc       240
     agcctcgttt ggctcaagcc ctacttggct ggagccgagt gcgcctccag gacggagagc       300
     tccagctctg ctcagaggcc cgatctggca gagttgctgg agcgaggctg ctctgccctg       360
     ggcgagcctt gcccagactt gcctcacagc taggcttcct tcccaggaag gagcaggctg       420
     agcgaggctg ggggacgcca ctggcgcctt cctcgcctca gctccgctcc tgccttgcct       480
     ttgcacctag gccccaggcg tccttgggga gggcttaggg gacgtgtctt gcacactgcc       540
     aagggctcca gcaggaagag ctctgtgtga gcgaaggaaa gggctagtgc agggctcctc       600
     cagccgttgc ttggccgccc agactcagcg ccgctcagag tgcaccaggc tcctagggtc       660
     cctggttggg gtctgcagcc ccacactccc ggaggctg                               698
//
ID   RTREP1      repbase; DNA   ; MAM   ; 991 BP.
XX
AC   X77013;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Repetitive DNA sequence; tandem repeat.
XX
KW   RTREP1; Tandem repetitive sequence.
XX
OS   Rangifer tarandus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Cervidae;
OC   Odocoileinae; Rangifer.
XX
RN   [1]
RP   1-991
RA   Lee C., Ritchie B.D., Lin C.C.;
RT   "A tandemly repetitive, centromeric DNA sequence from the
RT   Canadian woodland caribou (Rangifer tarandus caribou): its
RT   conservation and evolution in several deer species.";
RL   Chromosome Res 2(4), 293-306 (1994).
XX
RN   [2]
RP   1-991
RA   Lee C.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (04-JAN-1994). C. Lee,
RL   University of Alberta, 6-59 Heritage Medical Research Building,
RL   Edmonton, Alberta, T6G 2S2, CANADA.
XX
DR   GenBank; X77013; Positions       1     991.
XX
SQ   Sequence 991 BP; 243 A; 297 C; 239 G; 204 T; 8 other;
     ctgcagtgca tgcagagcta ttccgtgatc ccattcaaac aagtcaggan cttcgacttg        60
     cttaatggat ctcgagacag tccccaagaa cactgtcacc agtctagacg gaccctgagg       120
     tcaccccagc aacgcaaagc agctccatgt gccccaaatc aactcgagat gaggcccgat       180
     tcccctgcat tgactccaga gccattcccc gttccccatt caacacgacc ggtggctcga       240
     cttccttcag gcaactccag agatgccccg agaacactgt cccaaggtct agaggaacac       300
     caacttcagc acagcaactc gaggaatgct ccgtgtaccc caaatcgtct cgagatgcga       360
     gctgattccc tggcttaggc tcaagacgta tgccaacttc cagaagcanc tcaggaggag       420
     ggttctctca gcaataggta tgtgggaggg accccgagtt tgctgcctca aggggaatat       480
     acagcgagaa gccctaactt gaaaggaggn cggatttcct tgcagtggct tgaatacagg       540
     ctcgtctttc atctcacaac atgaagggat ctctgaatcc cctgtggaga ccttagagaa       600
     agccctaggt cnctgcctca ttttgnggga atgcctcaca tccncgctga cacctcgaga       660
     ggcacgcgga ggttcattgc ttnaaaaggt gacgatgcct gactcctctt gaatactgat       720
     aggaatcccc aaaatccctg tggctactgg aaagggtcct tgggtgccct gcctcacctc       780
     gagaagcgtc cctttggccc tgccaagcct cgaagagatt cctgaggtgt ccctccgtta       840
     ctagacagga gtcctgacgt cactgaagaa actcgtgttt tgaagggcca tccccgcgta       900
     agtcgagaac ataccccagg tccccgccgc aactcgagaa aaaccatgag acttccccct       960
     agnggcgaga tgaggcccca ttcccctgca g                                      991
//
ID   RTE-3_MD    repbase; DNA   ; MAM   ; 3123 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   RTE-3_MD, an RTE-like non-LTR retrotransposon from Monodelphis
DE   domestica - consensus sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; RTE-3_MD; SINE-1_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-3123
RG   The Broad Institute of MIT and Harvard, Cambridge, MA,
RG   USA.Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-3123
RA   Gentles A., Jurka J.;
RT   "RTE-3_MD, an RTE-like non-LTR retrotransposon from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(10), 331-331 (2005).
XX
CC   [2] (Consensus)
XX
CC   Copies around 83-84% similar to the consensus. RTE-3_MD shows no
CC   similarity to the other RTE elements in Monodelphis (RTE-1_MD and
CC   RTE-2_MD), but is similar to RTE-like elements in viper and cow
CC   (BOVB, BOVB_VA). Based on similar age distributions and target
CC   site lengths, and sequence similarity, the SINE SINE-1_MD may
CC   have been mobilized by RTE-3_MD. This consensus was reconstructed
CC   from the June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 3123 BP; 1182 A; 486 C; 733 G; 716 T; 6 other;
     aagacagaca ggtcatagtg gagagttctg acaaaaggtg atccactgga gaaggaaatg        60
     gcaaaccact ccagtatctt tgccaagaaa accccatgga tagtattaaa atgataaaag       120
     atgacaccrg aagatgagcc cctcaggtta gaaggtgtcc aacatgctac tggagaagag       180
     ctccagaaag aatgaagtar ctgggccaaa gctaaaagga agctcagctg tggatgtgtc       240
     tggtgacaaa aggaaagtct aatgctgtaa agatcaatat tgcataggaa cctggaatgt       300
     aagatctatg aaccaaggta agctggatgt ggtcaaacag gagatggaaa gattaaacat       360
     tgacatcttg ggtgtcagtg aacttaaatg gatgggaatg ggtgaattta attcaggtga       420
     tcattacata tactactgtg ggcaagaatc ccttagaaga aatggagtag ccctcatagt       480
     caataaaagg gtgagaaaag cagtactggg gtataatctc aaaaatgaca gaatgatatc       540
     tgtttgaatc caaggcaaac cattcaacat cacagtaata caagtctatg ctccaaccac       600
     tgatgcyaaa gaggccaaag ttgatcaatt ctatgaagac ctacaacatc ttctagaaat       660
     aacaccaaaa aaagatgtca cattcatcat aggggattgg aatgctaaag taggaaatca       720
     aaagataatt ggaataacag gcaagtttgg ccttggagta caaaatgaag cagggcagag       780
     actaatagag ttttgtcaag ataacttact ggtcatagca aacactcttt ttcaacaacc       840
     caaaaggtga ctctacacat ggacatcacc agatggtcaa tattgaaatc agattgatta       900
     tatactttgc agccaaaggt ggagaagctc tatacagtca gttaaaacaa gacctggagc       960
     tgactgtggc tcagatcatg agcttcttta ttgcaaaatt cagacttaaa ttaaattgaa      1020
     gaaagtaggg aaaaccatca gaccatatag gtatgaccta aataayatcc cttatgaata      1080
     tgaagtggaa gtgatgaata gagatttaag ggattagatc tggtagatag agtgcctgaa      1140
     gaactatgga cagaggttca caatattgta caggaggcag caacaaaaaa cattccaaag      1200
     aaaaagaaga gcaagaaagc aaaatggctg tctgatgagg ctttacaaat agctgaggaa      1260
     agaaggaaag tgaaaggtaa aggagaaagg gaaagatata cccaactgaa tgcagaattc      1320
     cagagaatag caaggagaga taagaaggtt ttcttaaatg agcaatgcaa agaaataaaa      1380
     gaaaacaata gaatgggaaa gacaagagat ctcttcaaga aaattagaga tatcaaggga      1440
     atatttcatg caaaaatggg catgataaaa gacaaaaatg gtagggactt aacagaagta      1500
     gaagagatta agaagaggtg gcaagaatat aacagaacta tacaagaaag atcttaacat      1560
     cactgataac cataatggtg tggttactga tctagagcca gacatcctgg agaatgaagt      1620
     caagtgggcc ttaggaagca ttgctaacaa taaggctagt ggaggtgatg gaattccagc      1680
     tgagctattt aaaatcctaa aagatgatgc tgttaaagtg ctgcactcaa tatgccagca      1740
     aatttggaaa actcaacagt ggccactgga ttggaaaaga tcagtttatg tcccaatcct      1800
     aaagaagggc aatgccaaag aatgttcaaa ttactgaaca attgtactca tttcacatgc      1860
     cagcaaggtt atgcttaaga ttctgcaagc taggcttcag caatatgtga accaagaatt      1920
     accagaagag caggctggtt tttaaagagg cagaggaact agagaccaaa ttgccaacat      1980
     tcactggatt atggagaaag caagggagtt ccagaaaaaa aatctacttc tgcttcattg      2040
     actacactaa agcctttgac tgtgtggatc ataacaaaat gtggcaagtc ctcaaagaga      2100
     tgggagtacc agatcatctt acttgtctcc tgaggaacct gtatgyaggt caagaagcaa      2160
     cagttagaac caaacatgga acaactgatt ggtttaagat tggaaaagga gtatgacaag      2220
     gctgtatatt gtcaccttat ttatttaact tatatgcaga gtacatcatg tgaaatgcca      2280
     ggctggatga atcaaaagcc agaattaagg ttgctrggag aaatatcaac aatctcagat      2340
     atgcagacaa taccactctg atggcagaaa gtgaagaaga attaagaagc ctcttgatga      2400
     gggtgaaaga ggagagtgta aaagctggct tgaagcttaa cattaaaaaa aaaacaactc      2460
     taagatcatg gcaactggtc ccatcacttc ctggcaaata gagggagaag aaatggaagc      2520
     agtgtcagat tttatattct tgggctcaaa gatcactgca gatggtgact gcagtccatg      2580
     aaattaaaag atgcttgctc cttggaagga aagctatggc aaatctggac agcatactaa      2640
     aaagcagaga tatcaccttg ctgacaaagg tccatatagt caaagctatg gtttttccag      2700
     tagcaatata tggctgtgag agttggacta taaggaaagc tgagtgctac agaatcgatg      2760
     ctttcaaatt gtggtgctag agaagacttt tgagagtccc ttggacagca aggagatcaa      2820
     atcagtcaat acttaaagaa attaattcag actattcatt ggaaggtcaa atactgaagc      2880
     tgaagcttaa atactttggc cacataatga gaagacagat gactcattgg aaaagaccct      2940
     gatgttggga aagattgaag gcaaaaggag aaggggatgg cagaggatga gatggataga      3000
     tagtgtcatg gaagcaatga acatgagctt ggacagactt taggagatag tggaggatag      3060
     aagggcctgg tatgctatgg tccatgggac aactgaagga ataaaagaca agaacaatat      3120
     atc                                                                    3123
//
ID   KORV_I      repbase; DNA   ; MAM   ; 7424 BP.
XX
AC   AF151794;
XX
DT   30-OCT-2001 (Rel. 6.09, Created)
DT   30-OCT-2001 (Rel. 6.09, Last updated, Version 1)
XX
DE   Phascolarctos cinereus retrovirus KoRV - internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; KORV_I;
KW   KORV_LTR.
XX
OS   Phascolarctos cinereus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Diprotodontia; Phascolarctidae;
OC   Phascolarctos.
XX
RN   [1]
RA   Hanger J.J., Bromham D.L., McKee J.J., O'Brien M.T.,
RA   Robinson F.W.;
RT   "The nucleotide sequence of koala (Phascolarctos cinereus)
RT   retrovirus: a novel type C endogenous virus related to gibbon ape
RT   leukemia virus.";
RL   J. Virol 74(9), 4264-4272 (2000).
XX
DR   GenBank; AF151794; Positions     505    7928.
XX
SQ   Sequence 7424 BP; 1815 A; 2104 C; 1918 G; 1587 T; 0 other;
     tttgggggct cgtccgggat ctgagattcc cacccaagga ccgccgaacc accgacggga        60
     ggtaagctgg ccagcgatcg ctctatgttc tctctgtgtc tgactccgaa aactctgact       120
     gtctattcgg tgtgcgcgca tttttggttt attccgggtt aatcgatcta agatcgaggc       180
     gtgagtagcg gacagacgtg ttcgggggct caccgcccgg caatcctggg agacgtccca       240
     ggatcagggg aggaccaggg acgcctggtg gatcccacgg caagggataa ttctcctctg       300
     atctcacagt tgcactgtct tgagagacat accctacctt ctgactcttt ttcctgtctt       360
     tttaatatac gtctacgccg ccatataatt tttttccttt ttatttcaat aataatcatt       420
     atctgggtcg taattccact cttcgggacc cccagaatgg gacagggtga gtcgacccct       480
     ctctctctta cactagatca ctggaaagac gtgaagacaa gggctcacaa tctttccgtg       540
     gagataagaa agggaaagtg gcaaaccttc tgttcctccg agtggcccac gttcgaagtg       600
     ggatggccac cggaggggac ttttaatcct tctattattt ctgcagtcaa aaggattgtc       660
     ttccaggaga ctggaggaca cccggaccag gttccctaca tcatagtttg gcaggacctc       720
     tccaacagcc cccccccatg ggtgccaccc ttagccaaga tcgccgttgc ctctggtcaa       780
     gataacgggc gaaagtcggc gggggggagg ccgtccgctc cttcccggct ccccatctac       840
     ccggagacgg acagcctgtt cctcctctca gaacccccgc cctatccaac gtcccctcca       900
     cctcccccag cccctcacgc ggccagacca gcgccaggcc taatggctga gggactcggc       960
     tctgagggac cggccgctgg aactaggagt cgccgtcccc gcagtcctac gggtgacact      1020
     ggtcctgact ccactgtggc cctgcccctc cgggccgtgg gacccccggc cgaaccaaac      1080
     ggcttagtcc ccttgcaata ttggcctttc tcctcagcag atctctataa ttggaaatct      1140
     aatcatcctt ctttttccga gaatcctaca ggacttacgg gactccttga gtccctcatg      1200
     ttttcccacc agcctacttg ggacgattgc cagcagctcc tgcaagtcct ctttaccacc      1260
     gaggaaagag aaaggattct tttggaggct cgcaaaaacg tccttggagt taacggggcc      1320
     cctacacaac tcgagaacct cattaatgag gccttccccc ttaatcgacc tcagtgggat      1380
     cacaacacgg ctgaaggtag ggagcgtctc ctggtctacc gccggactct agtggcgggt      1440
     ctcaaagggg cagcaaggcg ccccaccaat ttggccaagg taagagaagt cttgcaggga      1500
     ccaacagaac ccccgtccgt ttttctagaa cgtctaatgg aggcttatag gagatatacc      1560
     ccatttgatc cctcttctga gggacaaaag gcggcggtgg ccatgtcctt tatcgggcag      1620
     tctgccccgg atattaaaaa gaaattacaa aggctggaag gactccagga ccattccttg      1680
     caggatctca taaaggaggc agagaaggta tatcataaga gagagacaga ggaagaaaag      1740
     caagaaagag agaaaaagga gacagaggaa agagagagac ggcgtgacag gcgccaggag      1800
     aaaaacttga ccaaaatctt ggccgcggta gtaagtgaga aagggttcag agggagacag      1860
     gcagggaatc tgagcaacag ggcaatgagg gcacctaggg aaggaagacc gcctctggac      1920
     aaagatcagt gcgcatactg taaagaaagg ggccattggg caagggagtg cccccggaag      1980
     aagaacgcca gggaaaccaa tgtcctgacc ctgggtgact aggggagtcg gggttcggac      2040
     cccctccccg agcccagggt aacgttaact gtggagggga tccccactga gtttttggtt      2100
     gataccgggg ccgaacattc agtattgacc aagcctatgg gaaagatggg atccaaacgg      2160
     acagtcgtgg ctggggcgac gggcagcaaa gtttaccctt ggaccaccaa gagacttttg      2220
     aaaattggac aaaagcaagt gacccactca ttcttggtca tacccgaatg ccctgctccc      2280
     ctgttaggca gggacctcct caccaagcta aaagctcaaa tccagttttc cacagagggc      2340
     ccacaggtaa catgggaaga ccgccccgcc atgtgtttag tcctgaactt ggaggaggaa      2400
     taccgattac acgaaaagcc ggtccctcct tctatcgacc cgtcatggct ccaactcttt      2460
     cccatggttt gggccgagaa ggcaggtatg ggactggcca atcaagtccc accagtggta      2520
     gtggaactga agtcagatgc ctcaccagtg gctgttcgac agtacccaat gagcaaggaa      2580
     gcccgggagg gtatcaggcc ccacatccaa agattcttgg atttggggat tctggtacct      2640
     tgccagtcgc cctggaacac ccctttgtta cctgtaaaaa aacctggaac caatgactat      2700
     cggccagtcc aagatttgag ggaggtcaac aaaagagtac aggacattca tcccacagtc      2760
     ccgaacccct ataacctact cagttccctc ccgcccagcc acacctggta ttcagtttta      2820
     gacctcaaag atgctttctt ttgcctcaag ctacacccca acagccagcc attgttcgcg      2880
     tttgaatgga gagatccaga aaaaggcaat actggccagc taacctggac tcggctaccg      2940
     caaggattca agaactctcc caccctcttc gatgaggccc tccaccggga tctggcatcc      3000
     ttcagggctc tcaaccccca ggtagtgatg ctccaatatg ttgatgacct cctggtagcg      3060
     gccccaacgt accgagactg caaagaaggg acacgaaggc tcttacagga actaagtaag      3120
     ttgggatacc gagtgtcggc caaaaaggcc cagctttgcc gggaggaagt tacgtatctc      3180
     gggtatttgc taaaaggggg gaagagatgg ctgaccccag cccgaaaggc cactgtaatg      3240
     aagatcccca cccctacaac ccccagacaa gtccgtgagt ttttgggcac tgctggattc      3300
     tgtaggctct ggatccctgg tttcgcttcc ctggctgcac ccctgtaccc cctgacgaga      3360
     gaaaaggttc cctttacctg gactgaggcc caccaggaag cctttggccg tataaaagag      3420
     gccctgctat cggcccccgc cctggccctt ccggacctca ccaagccatt tgctctgtac      3480
     gtggatgaaa aagagggtgt tgcccggggg gtgcttactc aaaccctagg accatggcga      3540
     cgcccggtag cttacctgtc aaaaaaatta gatccggtgg ccagtgggtg gccaacttgc      3600
     ctaaaagcaa ttgcggccgt agcactcctt ctcaaggacg ctgataagtt aaccctagga      3660
     cagaacgtgt tggtgattgc acctcacaac ctggaaagca ttgtgagaca gccccccgac      3720
     cgatggatga caaatgccag gatgacccat taccaaagtc tgctgctgaa tgagagggtg      3780
     tcttttgcgc ccccggccat tctgaatcct gccaccctgc tccccgtaga gtcagacgac      3840
     accccaatac acatatgctc agaaatcctt gccgaggaga caggaacccg acctgatctg      3900
     agagatcagc cgttgcccgg ggtacccgct tggtatacgg atggcagcag tttcatcatg      3960
     gatggcaggc gacaagcagg tgctgccatt gtggacaaca agcggacggt gtgggcgagc      4020
     aacctgccag agggaacgtc agctcagaag gccgaactaa tcgccttgac acaagcatta      4080
     cgcttggccg aaggaaaaag catcaacatc tacacggaca gcaggtacgc ttttgccacc      4140
     gctcatgttc acggggctat atacaaacaa agaggactgc tcacttccgc tggaaaagac      4200
     atcaagaaca aagaggagat tttggccctg ctagaggcca tccatctccc taagcgagtc      4260
     gctatcatcc attgccccgg ccaccaaaga gggactgacc ctgtggctac cggaaaccga      4320
     aaggccgatg aggccgcgaa acaagctgcc cagtcaacca gaatactgac ggagaccacg      4380
     aaaaatcaag aacacttcga gcctacacgg gggaagatca agccgagaga gctcacccct      4440
     gaccagggaa gggaattcat tcaacggctg catcagctca cgcacttagg gccagacaag      4500
     cttctccagc ttgtaggtcg caccagtttt cacatcccga atctccagtc tgtagtgcgt      4560
     gaaatcacca gcaagtgtca ggtttgtgct gtaactaacg cagtcaccac ctaccgagag      4620
     cctggaagga ggcaaagggg agatcgaccc ggcgtgtatt gggaagtaga cttcacagag      4680
     gttaagcctg gccggtatgg taatagatat ttgctagtgt ttatcgatac attttctggg      4740
     tgggtagaag ctttccctac aaaaacagag acagccctga ccgtctgcaa gaagatactt      4800
     gaggaaatcc tacctcgttt cgggatccct aaggtactcg ggtccgacaa tggccctgcc      4860
     ttcgttgctc aggtaagcca ggggttggcc actcaactgg ggattgattg gaaattacat      4920
     tgtgcatata gaccccagag ctcaggtcag gtagaaagga tgaataggac aattaaagag      4980
     accttgacaa aattggcctt agagaccggt ggaaaagact gggtgaccct cctccctttg      5040
     gcgctactta gggcccggaa tacccctggc cagtttggcc tgactcctta tgagattctt      5100
     catggggggc cgccccctgt acttgcgtct ggggaagtcg tgggttctaa tggtgatttt      5160
     tttcccgttc tatttaccca cttgaaggct ttagaggttg tgaggactca gatctgggac      5220
     cagataaaag aagcctacag gcctggtact gtggccattc cccacccgtt ccaggtcggt      5280
     gaccgagtgc tggttagacg tcatcggtcc ggcagccttg agcctcggtg gaaaggccca      5340
     tacctggtgc tactgaccac cccgaccgcg gtgaaggttg acggtattgc tgcctgggtc      5400
     catgcttctc atctcaaacc cgcgccacct ggggcacccg atgagtcctg ggaactggaa      5460
     aagactgatc atcctcttaa gttgcgtgtt cggcggcgcc gaaatgaatc aacagcataa      5520
     caaccctcac caacccatga ctctcacctg gcaggtactg tcccagacgg gaagtgtcgt      5580
     ttgggaaaag aaagcagtcg agccaccctg gacgtggtgg ccctctcttg agcctgatgt      5640
     gtgcgcgctg gtagccggtc tcgagtcctg ggacatcccg gaactcactg catcggcctc      5700
     tcaacaggcc aggccccctg attcaaacta tgaacatgct tataatcaga tcacttgggg      5760
     aaccctggga tgtagctatc cccgggccag aacaagaatt gctaggtccc agttctacgt      5820
     gtgcccccgg gatggccgtt ccctgtccga ggcccggagg tgcggaggac ttgaatcttt      5880
     gtactgtaaa gagtggggtt gtgagaccgc gggaaccgcc tactggcaac cccggtcctc      5940
     gtgggacctt ataactgtag gccagggtca ccctacaggg acatgcgagc gcaccggttg      6000
     gtgcaaccca ctcaagatag agttcaccga gcctggcaaa cggttccgaa actggctaca      6060
     ggggcgaacc tggggtctaa ggttctatgt gactggacac ccaggcgtgc agttgaccat      6120
     acgactagtg atcacaagtc ccccaccggt agtagtgggc cccgatcctg tcctcgcaga      6180
     acaaggacct cccagaaaaa ttcccttcct ccccagagtg ccggttccta ccctatcacc      6240
     cccagcgtcc cctatcccca cggtacaggc tagccccccg gcccctagta ctccatctcc      6300
     caccacgggc gaccggctct ttggcctcgt acaaggggcc tttctggcct tgaatgccac      6360
     caacccggag gccacggagt cttgctggct ctgtctagcc ctcggccctc cttattacga      6420
     aggaatcgca actccagggc aagtcactta tgcctccaca gattcccaat gtcgctgggg      6480
     aggaaaaggg aagctcaccc tcactgaagt ctctggactc gggttatgta tagggaaagt      6540
     acctcctact caccaacatc tctgcaacct gactataccc ttaaacgcct cacatactca      6600
     caagtacctc ctcccctcca accgcagctg gtgggcttgt aattctggcc tcaccccctg      6660
     cctctctaca tcagtcttca accagtctaa cgatttctgt atccagatcc agcttgtccc      6720
     tcgcatctac tatcacccag acggtacctt gctacaggcc tatgagtccc cccactctag      6780
     aaacaagaga gagcctgtct cactcaccct ggctgtcctt ctcggattag gggtcgcagc      6840
     aggtataggt accggctcga ccgccctaat aaaagggccc atagacctcc aacaaggttt      6900
     gactagcctc cagattgcca tggatacaga ccttagggcc cttcaagact ccataagtaa      6960
     actagaggat tccttaacct ccctgtctga agtagtgctc cagaatagga gaggccttga      7020
     tctgctattt ttgaaggaag ggggcctttg tgcagcccta aaagaggaat gctgtttcta      7080
     tgttgaccac tcaggcgcgg tgcgagactc catgaggaga ctcaaggaaa ggttagataa      7140
     gaggcagtta gagcaccaaa agaatttaag ttggtacgag ggatggttca accgttcccc      7200
     ctggcttact actttactgt ctgcccttgc tggtcccctg ctactcctcc ttctgttact      7260
     caccctcggg ccttgtgtca tcaataagtt agtgcaattc atcaatgata gggttagtgc      7320
     agtaaggatt ctggttctca ggcacaagta ccagacccta gacaacgagg ataaccttta      7380
     attctgctct atgattagag ctaccctcaa agaaaatggg ggaa                       7424
//
ID   L1-10_MD    repbase; DNA   ; MAM   ; 2548 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   L1-10_MD, a subfamily of LINE1 element from Monodelphis domestica
DE   - consensus sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1-10_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-2548
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-2548
RA   Gentles A., Jurka J.;
RT   "L1-10_MD, a subfamily of L1 element from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(10), 309-309 (2005).
XX
CC   [2] (Consensus)
XX
CC   There are around 71000 copies of this element in version 2 of the
CC   Monodelphis assembly, with average similarity to this consensus
CC   of ~80%. This consensus was reconstructed from the June 2005
CC   release of the 6.8X WGS sequence.
XX
SQ   Sequence 2548 BP; 1067 A; 321 C; 415 G; 736 T; 9 other;
     ctacaacaat atgtcacaaa gattatacat tatgaccaaa taggatttat accaggtatg        60
     cagaattatt tactctatgg aaaattatta ttgattacat caataaaaaa gtaataaaaa       120
     ccatatgatt atatcgatgg atgaagaaaa accctttgac aaaatagaac acattcctat       180
     taaatatttt aaagtattag tttaaataga tttttcctta aattaataag aagcatatat       240
     ttaaaaccat cagcaaatat ctgtaatagt tacagatggc attaaaagat gcccattatc       300
     accaatataa tttaatattg tattagaaat gctagcaata gcaataagag aataaaaaga       360
     aattgaaggt atcagaatgg gcaaagaggt aataaaacta tctttttttc agatgatata       420
     tagaaaatcc tagatattca actaaaaaat taattgaaac tatcaataat tttagcaaag       480
     tagcaggata taaaataaac ccacataaat catcagcatt tmtatatatt accaacaatg       540
     tcatgcaaga agagagataa tccatttaaa ytaaccatag ataraataaa atacctagga       600
     gtatatcttc caaaacaaat ccagaaacta tatgaacata attataaaat actttttata       660
     caaataaagt cagatttaaa taattggaga aatattcatt gttcatgggt gggcagagcc       720
     aatataatta aaatgacaat cctacctaan ctactaatct acttattcaa tgccatccca       780
     attaaattac caaaaaagtt atttatttta ttgaactaga aaaaataata acaaaattca       840
     tttggaaaaa caaaaggtca agaatatcaa aggaattaat gaaaaatgtt aaagaaagar       900
     gttctagcag taccagattt taaactatat tataaagcag taattatcaa aactatctgg       960
     tactggctaa gaaatagaaa agtagatcag tggaacagaa cagacataca acaaacagtt      1020
     gtaaaagatt atagtaacct tgtgtttgac aaaagtaaag atccaagttt tgggaataag      1080
     aattcactat ttggtaaaaa ttgttgggaa aactggaaag cagtttggca gaaactagat      1140
     atagaccaat atcttacacc atttaccaag ataagatcaa aatggataca tgacctaggc      1200
     ataaagggag atatcataag caaattaaaa gaacagggga aacatattac ctatcagatt      1260
     tatggatagg agaagaattt atgaataaac aagagataga aagcattgtg agatgtaaaa      1320
     tggataattt tgaatacatt aaattgaaaa gtttttgtac aaataaaatt aatgtagcca      1380
     agattagaag gaaagcagta aattggggaa aaatgtttat agacagtttc tcagatagag      1440
     gtctcatatc taaaatatat agagaacttt gtcaaatata taagaatatg agccattttc      1500
     ccccaattga taaatggtca aaagatatga acagacaatt tttggatgaa gaaatcaaag      1560
     ctatatataa ctatatgaaa aaatgctcta aatcattatt gattagagaa atgcaaatca      1620
     aaacaattct ytgagatatc atctcacacc tatcagattg gctaaaatga taaaagggca      1680
     aaatgacaaa tgttggaggg gatgtggaaa aatggggaca ctaatacatt gttggtggaa      1740
     ctgtgaactg atccaaycat tttggagagc aatctggaat tatgctcaaa gagttataaa      1800
     actatgtata ccttttgacc cagcaatacc actattaggt ttatttccta aggtgatcaa      1860
     ggaaaaagga aaagaaccta tatgttctaa aatatttata gcagctctct ttgtggtgaa      1920
     actgaaaatt gaagtggaga actggaaatt gaagggatgt ccatcaattg gggaatggct      1980
     aaacaaattg tggtatatga ttgtgatgga atactattgt gccataagaa atgacaagca      2040
     ggttaatttt aaaaaaactt ggaaagacct atatgaaatk atgaaaagtg aaatgagcag      2100
     aaccaagaga acattatata cagcaacaac aatattgttt gaagaatrac ttgtgtatga      2160
     cttaactatt atcaacaagg caaggatcca ggacaactct aagggactca tgataaaaaa      2220
     gtatatccac catcatagaa ggaagagatg gaatctaaat gcatattgaa acataccatt      2280
     cttcacttta tttcctccat gaatttttct ctattataag caatatatgt gccttgtttt      2340
     acaacatgat aaacagggaa atatgtgtta tatgataaca tatgtacaac ctatattata      2400
     ttacctgcct tcttggggag gggtgggaga gaaggaggga aaaagaatga gacaaatttt      2460
     tggacatagc tcatgtgaga atttgcttct attgaataag catatttatt ccatatttat      2520
     aaaaatcata ttgtttgtat attatgtt                                         2548
//
ID   CfERV1c_LTR repbase; DNA   ; MAM   ; 376 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from dog.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae.
XX
RN   [1]
RP   1-376
RA   Smit A.F.;
RT   "CfERV1c_LTR - ERV1 Endogenous Retrovirus from dog.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   0.5% subst.
XX
SQ   Sequence 376 BP; 78 A; 115 C; 93 G; 90 T; 0 other;
     tgtgggaccc aggaaattga acaaaatccc ctacccctgg acaagcagag caggactgac        60
     tctattttgg gctgcacccg ccttgtgctg acctgcttat tacttagggc actgccccgc       120
     cctagtcaaa gaccaggaca caccctaacc ggaaatccgg ctcagcggac cagcatgact       180
     gtgcaacttt ctgcgtatcc cattggccac tggcccctat aaagttgcta agcctcttag       240
     tctcggggtc caagtccctg ctccgctgcg tcgggtatac ttggacccag gctcgagctt       300
     gtaaataaac cctcgtgtgt ttgcatcggt gtcggctcct tggcggtttc tcggattcgc       360
     gatcttgggc acaaca                                                       376
//
ID   NERV1_MD_LTR repbase; DNA   ; MAM   ; 324 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   NERV1_MD, a non-autonomous endogenous class 1 retrovirus-like
DE   element from Monodelphis domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; NERV1_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-324
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-324
RA   Gentles A., Jurka J.;
RT   "NERV1_MD, a non-autonomous ERV1 class retroelement from the
RT   opossum M. domestica.";
RL   Repbase Reports 5(11), 400-400 (2005).
XX
CC   [2] (Consensus)
XX
CC   Unusually for Monodelphis ERVs, the target site duplications are
CC   3 bp. This consensus was reconstructed from the June 2005 release
CC   of the 6.8X WGS sequence.
XX
SQ   Sequence 324 BP; 91 A; 67 C; 50 G; 113 T; 3 other;
     tgtataaaag gagaatttga accctagact tcaatcccca gaagtccttg gtatttccca        60
     gaattcccta taatctcacc tgagtctcca cctgggcgag atcacaatta gtatttaact       120
     ggcagtaacg cctcccacgc yttctccttt cctcttctgc aatgatgtag cagtaagcta       180
     agtgcrggga ttttgaatgg gctaatcagc catgggcacg tggtttttat tttgtatttt       240
     ctttattcct tgatttctaa taatccttaa taaacctcat aaaatataat atttttatta       300
     ytagagacaa atttaatttt taca                                              324
//
ID   ERV24_MD_I  repbase; DNA   ; MAM   ; 7815 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV24_MD, endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-7815
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-7815
RA   Gentles A., Jurka J.;
RT   "ERV24_MD, HERVR (ERV1) class retroviral element from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 373-373 (2005).
XX
CC   [2] (Consensus)
XX
CC   Another class 1 (HERVR) ERV with copies that average ~93% similar
CC   to the consensus. The ORFs are quite intact, encoding the usual
CC   reverse transcriptase and integrase domains. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1915..2400,2404..5988)
FT                 /product="ERV24_MD_I_1p"
FT                 /translation="MSHPQPSLNASWRPIKPTPPVDPKAPENRRAVNIAFX
FT                 AQSAPDICRKLQKLEGFEGKLLSELMEVAQKVFNTRDGTDNQNTKKAARAV
FT                 LAALADERTCQPNKVWDGRKRSSGDDRGRGRGDVEKRMPRLQRDQCAYCKE
FT                 KGHWKNECPRRATGREVVPQLLGRGQGSASPREPMVKLKVGGKMVDFLVDT
FT                 GATYSALRTDPGPYSSQNTFIQGANGHIESYPWTTSHTVDLGTGTVMHSFL
FT                 VMPDCPYPLLGRDLLHKLKATISFKGGGTKLYFADTPQTLLLSCPLSEEYL
FT                 LTAQASRPELSSLLQEFQARVPGVWAESNPPGLAAHQPPVVVQLLSSATPV
FT                 RVRQYSISKQAREGISIHIQRLLEAGILVPCQSPWNTPLLPVQKPGTLDYR
FT                 PVQDLREVNKRIETIHPTVPNPYTLLSQLPPEHTVYTVLDLKDAFFSIPLA
FT                 PISQPIFAFEDPREGKGGQLTWSRIPQGFKNSPSLFGEALGRDLSAFRESH
FT                 SDVTLLQYVDDLLLATPSAETCKTAPLHLLELLGTLGYRVSAKKAQLCTTS
FT                 VTYLGYELEGGVRKLSCAQIQTILNIPVPRTKRQVREFWGTVGYCRLWIPG
FT                 FAEIAKPLYAATAGKLENLDWTEDCQRAFNQLKAALVSAPALGLPNLSKPF
FT                 HLFVDECRGAAVGVLTQSIGPWRRPVAYLSKKLDPVAAGWPNCLRAVAATA
FT                 LLVREASKLTFGQDVVVTAPHSVESLLRSPPERWLSNARITQYQALLLNPP
FT                 TVTFSKTETLNPATLLPETGKEAVVTHDCLQILDSLTSLRPDLTDVPLPMA
FT                 AHTLFVDGSSFVQDGIRYAGAAVVEPPRVIWAQSLGHGTSAQRAELIALTQ
FT                 ALRWGAGKSVNIYTDSRYAFATAHVHGALYQERGFLTAGGKDIKNGPEILA
FT                 LLEAVWLPSHLAIIHCKGHQKGDSPEAVGNRLADETARAVALQPVSPIQAL
FT                 PMGVPRDPPVLHYSPDDSDRGKRLGATPNSDGWLVLPDGRTLLPEAVGRQL
FT                 AKRIHDTTHMGGTKLSDMLDRDFFFHNMHRICKDITSRCETCVRVNQKGGP
FT                 KEPGGTRLRGLEPGEQWEVDFTEIKPGKYGYRYLLVLVDTFSGWVEAYPTK
FT                 HETASVVVKKLISEIIPRFGLPLGIGSDNGPAFVARVTQQLAKTLGINWKL
FT                 HCAFRPQSSGQVERMNSTLKETLTKLVLESGENWVSLLPFALLRARCTPYV
FT                 QGITPFEILFGRPPPLLPKLGLENLTECDNQYLFSSLKALDKLRKTISQTV
FT                 QAAHPSPPKCDLPPFTGEPGDLVWVRKIPAGALEPQWTGPYVIILTTPRAV
FT                 KVAGKKCWIHVSQLKPVKPRAAAQGAEQWKVTKTSDPLKIKIHRH"
FT   CDS           5907..7244
FT                 /product="ERV24_MD_I_2p"
FT                 /translation="TKSSSARSRAVEGHQNLRSPKDQDSSTLNTMGKGGWG
FT                 GAMLGLVLLGFLEISLPFQVIQYRWVISRTGDGKELISDRPTQEEKTPKIL
FT                 FDLCDLLGSKWIDPSHTLSCATPVGTLYLAETPVYACPSTGPPSCKIGREF
FT                 YCAAWGCETVAPWRQEDPDIILQRERSRVWDAPLDSRNPLSLTIKNPEDKG
FT                 WLLGQTWGLRLDVRGKDPGIEFIVQRIADKMQPSPVGQNREVIMGFGLEPT
FT                 PTVSAPGQPVKTAIKLPHREQSLLTMLTTVFSFLNASAPQTTSDCWLCLNP
FT                 QPPYYVGIGAQGFLSPSVSPNALYITMITDAEAKVQCKWGHEPILTLGDLQ
FT                 GNGTCFMESGVDLSHSFLAPHCVSSVTAPNVDSYENWYWKAPPGTWFACTS
FT                 GLTPCLSPHTLRTKDAAGDPVICILVHIIPRFTIIQGKEVESTLKGCRPVN
FT                 T"
XX
SQ   Sequence 7815 BP; 1894 A; 1955 C; 1993 G; 1963 T; 10 other;
     gtgcmccact tcagttggag gcccccagcg agatctcrag ccccaggacc aggaggtaag        60
     gactttggag agggctgctg taagwgtgtg tgtgttgtgt gtgtgtgtgt gtgtgtgtgt       120
     gtgtgtgtgt gtgtkcttgg gggagagttc tctaggcctg cggcatatgg ctaaatggct       180
     ggggttgtac ccaaatatat gggcagcttt tgctaagctg gggcctgtga aggagacttg       240
     aaccyttatc ccctttgggg gtgtttctga gtgcagactt ggagagtatg cagtttccaa       300
     ctcctgagag ggattgggtc agaaatccaa ggaagtgaat ggtgtcctct ctggagccca       360
     cccctggttc tggtatttga gatttcgaac aaaatttagg ctgattttgg aaccatctgt       420
     tctgttctgt tctgttctgg taagttagct ctgtttctct agaattctgt tttgttttgc       480
     cccagggcct gttttactct aggagtctgc ttgcttgaag gtttggtctt gaagttctgt       540
     ttgggcccta gagtccggtt tttgccctgg tgtactgttt tgctttggtt ctgttctgtt       600
     ctgttctgtt ctgttctgtt ctgggtattt ggatccagaa gaggctgttg ggttgctgga       660
     cgcagcttta atcccacagt caggtcttct ggaactgcag gaaaacctta gggttgtgta       720
     tgagtgtgtg attaagtgta tgtcctgtgg atttttgttg tctttgtttt gtttttgtgc       780
     atttttccat aatgggtcag tcctcatcat caaatttggg aactccatta tcatgtgtcc       840
     ttaagaattt ccggcatttt aaaaaggtag ctgctgatta tggaattcag gtttcccctg       900
     gtaccctccg cactttatgt gaattggagt ggcctactct gggggtcgga tggcccccag       960
     aggggactac agatctttct gtgtcctatg tggtccggag agtaatatct gggaaatcag      1020
     ggcactctga tcagattcca tatattgatg tttggataaa tctacttact gacactccaa      1080
     agaaattgaa ggcttgcctt tcgggacaaa attactctgc taaaacagag gctgctttgc      1140
     taactaattc actctcctga gaagggaaga gcaagcctcc cagaggggga aagaacactc      1200
     ctccccctgt gctccaaggg gaccctgagg agccacctcc ctatgtcaat agggaatctt      1260
     tattaccaca acccctaccc ccatcccctt catcacctct gtccctggca cccccttcag      1320
     gctctctcta ccccactctt ccttcagagc ccacgcccat gaccagtcca ccccatacac      1380
     gactgggtac cccctatcat tatactcaaa attcaggaca ggctggagta aagattgttg      1440
     ctaaatccca gctgccttta tgtcaggcag gacctgggac aggggaagat ccacagcctt      1500
     tcctggttta tgcccctttt tcttccacag acctctataa ctggaagaat cagaatcctt      1560
     ccttctctga taaaccccaa gggctgattt ctttgcttga aacagttttc tttacccata      1620
     atcccacttg ggatgattgt cagcagctgt tacaggttct gttcaccttt gaggaatggg      1680
     atcggatcaa gcgggaggct gttaaaacta tcctggggcg ggatggccaa ccgactaccg      1740
     accagcaccr catagagact gtctttccgt ccagtaggcc agactgggat tttaattctg      1800
     atcaaggtaa ggaggctctc aatcggtatc gccagactct actaagggga ctctgggctg      1860
     cagccaggag gtcaaccaat ctctctaaag taagtgaggt aacccagggt ccagatgagt      1920
     caccctcagc cttccttgaa cgcctcatgg aggcctataa aacctacacc tccagtggac      1980
     cccaaggctc ccgaaaatcg cagggcagta aatatagctt ttktggccca gtcagccccc      2040
     gatatatgca gaaaattaca gaaactggag ggatttgagg gaaaactgtt atctgagctc      2100
     atggaagtag ctcaaaaagt gttcaatact agggatggga ctgataacca aaatactaag      2160
     aaggcagcta gggcagttct agcagcatta gctgatgaga gaacctgcca gcctaataag      2220
     gtatgggatg ggaggaagag aagcagtggg gatgacagag gtagggggag gggtgatgtt      2280
     gagaaacgaa tgccccgatt gcaaagagat cagtgtgctt attgtaagga aaagggccat      2340
     tggaaaaatg agtgcccaag aagagcaaca ggcagggagg ttgtccctca gctgctgggc      2400
     tgacggggcc agggctcagc cagcccccga gagcccatgg tgaagttaaa ggtggggggc      2460
     aagatggtgg acttcctggt cgacacaggg gccacctatt ctgctttgcg cactgatccc      2520
     ggtccatatt cctcccagaa taccttcatt caaggtgcta atggccacat tgaatcctac      2580
     ccctggacta catcacacac agtcgatctt ggaacaggga cagtgatgca ctccttcttg      2640
     gtcatgcccg attgccccta cccccttctt ggtagggact tactgcacaa actgaaagcc      2700
     accatctcgt tcaagggagg ggggactaaa ctctactttg cagacacacc tcagaccctc      2760
     ctcctgtcct gcccactctc agaggaatat ctattgaccg cacaggccag ccgaccagaa      2820
     ctatcctcat tactgcagga gtttcaggcc agagttcctg gggtctgggc agagtctaat      2880
     ccccctggcc tggccgccca ccagccacca gtggtggtgc agcttctcag ctctgccacg      2940
     cctgtccggg taaggcagta cagcatcagc aagcaggcca gagaaggaat tagcattcat      3000
     atacagagac ttttggaggc tggaatcctg gttccttgcc agtccccttg gaatacccct      3060
     ctgttacctg tgcaaaaacc tggcaccctg gactatcgcc ccgttcaaga tctcagggaa      3120
     gttaataaga ggattgaaac tatccatcct acagtaccaa acccttatac cctgttaagc      3180
     cagcttccac cggagcatac agtgtacact gtcttggatc tcaaagatgc gttcttctcc      3240
     atccccctgg cccccattag tcagccaatc tttgcttttg aggaccccag ggagggaaag      3300
     gggggtcagt taacctggtc tcgaattcca caagggttca aaaattcccc aagcctcttt      3360
     ggggaggccc tggggaggga tttatcggca ttcagagaaa gccattctga tgtcaccttg      3420
     ctccagtatg tggatgattt gcttttggcc accccaagtg ccgagacttg taagactgct      3480
     cctctccact tgttggagtt gctgggcacc ctgggttatc gggtctcagc caagaaagcc      3540
     cagctctgca ccacctccgt cacctatctg ggctacgagc tggaaggggg tgtgaggaaa      3600
     ctctcctgtg cccagatcca gacgatcctc aatatccccg tgcccagaac caagcggcag      3660
     gtgcgggaat tttgggggac agtggggtac tgcaggctgt ggattccagg attcgctgag      3720
     attgctaagc cactgtatgc agctacggct ggcaagctgg aaaacctgga ctggacggag      3780
     gactgtcagc gggccttcaa tcaactgaaa gcagccttgg tgagtgcccc ggccctcggg      3840
     ctcccaaacc tgtctaaacc ttttcacctc ttcgtagatg aatgtagggg ggcagcagtg      3900
     ggggtcctca cccagtccat tggaccatgg cggaggcctg tggcctatct gtctaagaag      3960
     ctggaccctg tggcagcagg atggcctaac tgtctccggg ctgtggctgc cactgcgctc      4020
     ttggtcaggg aggcttccaa actcaccttt ggccaagacg tggtcgtgac agcaccgcac      4080
     tcagtggagt ccctgcttag aagtcctcca gagagatggc tttctaacgc ccgcattact      4140
     cagtatcagg ctctcctgct caaccccccc acagtgactt tttctaagac tgaaactttg      4200
     aatccagcca ccctcctccc agaaacggga aaggaggcag tagtgactca tgactgcttg      4260
     caaatcttgg attccctgac cagtctgcgc cccgatttga ctgatgttcc cctgcctatg      4320
     gctgcccaca ccctctttgt ggatggtagc agcttcgtac aggatgggat acgctatgct      4380
     ggagccgcag tggtggagcc cccaagggtg atctgggcac agtccctggg acatgggacc      4440
     tcggcccaac gagcggaact gattgcatta acacaggctt tamgatgggg agcagggaag      4500
     tctgttaaca tttatacaga cagccgatat gcatttgcca ccgcccatgt ccatggagca      4560
     ctgtaccagg agcggggatt cctcactgct ggtggcaaag atatcaagaa tggscctgag      4620
     attctggccc tcctggaggc tgtgtggctc ccctctcacc ttgccatcat ccattgcaag      4680
     ggacaccaga agggcgattc ccctgaagct gtaggtaatc gcctggctga cgaaacagcg      4740
     agggctgtgg ccttgcagcc tgtgtctccc attcaagcct tgcccatggg tgtgccacga      4800
     gatcccccag tccttcatta ctctcctgac gactcagacc gaggtaagag gctgggtgcc      4860
     accccgaatt cagatggatg gctggtcctg ccagatggca ggactctctt gccagaagca      4920
     gtggggagac agctagcaaa aagaatacat gacaccacac atatgggagg cacaaaactg      4980
     agtgatatgc tggacagaga ctttttcttt cacaatatgc accgaatctg caaagacatc      5040
     acttcaagat gtgaaacatg tgtgcgggtt aatcaaaagg ggggaccgaa ggaaccaggg      5100
     ggcaccaggt taagagggct ggagccagga gaacagtggg aggtagattt tacagaaatt      5160
     aagccaggga aatatgggta caggtatctt ttagtcctgg tagacacttt ttcaggatgg      5220
     gtagaagcat atccaacaaa acatgaaact gcctcagtgg tagttaagaa attaatatca      5280
     gagatcattc ctaggtttgg gctcccactg ggaatagggt cagataatgg gcctgctttt      5340
     gtagctaggg tgactcagca attggctaag accctgggca taaattggaa attacattgt      5400
     gcatttcggc ctcaaagttc aggacaggtc gagcgcatga atagcacact gaaggagacc      5460
     ctgacaaaat tggtcctaga gtctggcgag aactgggtaa gcctcctccc ctttgccctc      5520
     ctgagggccc ggtgcacacc atatgtacaa ggtattaccc catttgaaat tctgttcggt      5580
     cgaccacctc ccctccttcc taaattggga ctagaaaatt tgactgaatg tgataaccaa      5640
     tatctgttct cttccctgaa ggctttggat aagctcagga aaactatcag tcaaactgtc      5700
     caagctgccc atccctcacc ccccaaatgt gacctgcccc cttttacagg tgaaccagga      5760
     gatcttgtgt gggttcggaa gattcctgca ggggctctcg aaccacagtg gactggacct      5820
     tatgtgataa tactgaccac ccccagagct gtaaaggttg caggaaagaa atgctggatc      5880
     cacgtgtctc aactgaaacc tgttaaacca agagcagcag cgcaaggagc agagcagtgg      5940
     aaggtcacca aaacctcaga tcccctaaag atcaagattc atcgacattg aacactatgg      6000
     gaaagggagg atggggtggg gctatgcttg gacttgtact tttgggattt ttggaaatta      6060
     gtctaccctt ccaggtaatt caataccgat gggtaatcag taggacaggg gatgggaagg      6120
     aattaattag tgacagacca acccaggagg agaaaacccc caaaattctt tttgatttgt      6180
     gtgatttact tgggagtaag tggatagatc cctcacatac cctttcatgc gcaaccccag      6240
     tagggactct gtatctagca gaaacccctg tctatgcttg cccatctaca gggccaccat      6300
     catgcaaaat agggagagaa ttctattgtg cagcctgggg atgtgaaact gttgccccgt      6360
     ggcggcagga ggaccccgat atcatactac aaagggagcg aagcagggtc tgggacgccc      6420
     cccttgattc cagaaatccc ctttccctaa ctattaaaaa cccagaggat aagggatggc      6480
     tactaggcca gacatgggga cttaggctgg atgtgagagg caaggaccca ggaatagaat      6540
     ttatagtaca gcgaatagct gacaaaatgc aaccctcacc agtcggccag aaccgagagg      6600
     tcattatggg atttggkctg gaacccaccc ccactgtctc cgcacctggg caaccagtta      6660
     agactgccat aaagcttcct cacagagagc aatccctcct caccatgctc acaactgtct      6720
     tttccttctt aaatgccagc gccccccaga caacatcgga ctgttggctc tgtttgaacc      6780
     ctcaacctcc atattatgtt ggtattgggg cccaggggtt cctgtctccc tcagtctccc      6840
     caaatgcttt gtatatcacc atgatcactg atgctgaggc caaagtccaa tgcaagtggg      6900
     gacatgagcc aattcttacc ttaggggact tgcaaggaaa tggcacttgt tttatggagt      6960
     ctggggtaga tctaagtcat tcatttcttg ctccccactg tgtcagcagt gtcacagcac      7020
     ctaatgttga ctcttatgag aattggtact ggaaagcccc tcccggaaca tggttcgcct      7080
     gtacttcagg tctcacgcca tgtttatctc ctcatacctt aagaacaaag gatgctgcag      7140
     gtgaccctgt aatttgcatc ctggttcata ttattcccag gtttactatt attcagggga      7200
     aggaggtaga gagcactttg aagggatgca gaccagtgaa tacctgatgg gccttatcag      7260
     actccgtaga gtgccaattc tcatcccaat cctagtaggg ctggggatag ggggaactgc      7320
     agccttaagt actgctgccc tggttcaggg aaaccagaat ttccagttct ctctctaacc      7380
     agattgattc agaccttagt ggattagaaa cttctattaa tttcctggaa aaatcactgt      7440
     cctctctggc agaaatggtt ctccaaaata ggcggggact agacctcctt ttctttaagc      7500
     aggggggact ctgcgtggca ttgggagaat cctgttgttt ttatgctaat cattctggga      7560
     ttatacagga atctctagcc ctgctcaggg gaaggatcca agagagggag cagattaatg      7620
     ctcaatccag caactggtat tctagtcttt tctcttggtc tccttggctg actaccttga      7680
     tcacggccat ggcaggacca ctcatattag taatagtggg cctcttgata ggaccctgcc      7740
     tgatcaactg tcttatgacc tatatctgac agcgtcttca ggctattaag cttttggcct      7800
     taagatcaca attct                                                       7815
//
ID   Carsat3     repbase; DNA   ; MAM   ; 168 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Satellite from carnivores.
XX
KW   Satellite; Simple Repeat.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-168
RA   Smit A.F.;
RT   "Carsat3 - Satellite from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 168 BP; 60 A; 34 C; 34 G; 32 T; 8 other;
     aattcacacn ggagagaaac cctatgaatg taatgaatgt gggaaagcct tcagccagaa        60
     gtcanacctc attnnacatc agagaattca cacnggagag aaaccctatg aatgtaatga       120
     atgtgggaaa gccttcagcc agaagtcana cctcattnna catcagag                    168
//
ID   CHR-2       repbase; DNA   ; MAM   ; 321 BP.
XX
AC   AB005034;
XX
DT   29-MAY-1998 (Rel. 3.04, Created)
DT   29-MAY-1998 (Rel. 3.04, Last updated, Version 1)
XX
DE   Physeter macrocephalus DNA for SINE retroposon CHR-2.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; CHR-2.
XX
OS   Physeter catodon
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Cetacea; Odontoceti;
OC   Physeteridae; Physeter.
XX
RN   [1]
RP   1-321
RA   Okada N.;
RT   "Direct submission.";
RL   DDBJ/EMBL/GenBank (1997). Norihiro Okada, Tokyo Institute of
RL   Technology, Faculty of Bioscience and Biotechnology; 4259
RL   Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226, Japan
RL   (E-mail:nokada@bio.titech.ac.jp, Tel:+81-45-923-1136,
RL   Fax:+81-45-923-1136).
XX
RN   [2]
RP   1-109
RA   Shimamura M., Yasue H., Abe H., Kishiro T., Goto M., Munechika I.,
RA   Okada N.;
RT   "Molecular evidence from retroposons that whales form a clade
RT   within even-toed ungulates.";
RL   Nature 388, 666-670 (1997).
XX
DR   GenBank; AB005034; Positions       1     321.
XX
SQ   Sequence 321 BP; 79 A; 112 C; 87 G; 39 T; 4 other;
     gggcttccct ggtggcgcag tggttaagaa tctgcctgcc aatgcagggg acacgggttc        60
     gagccctggt ccgggaagat cccacatgcc gcggagcaac taagcccntg cgccacaact       120
     actgagcctg cgctctagag cccgcgagcc acaactactg agcccgcgtg ccacaactac       180
     tgaagcccac gtgcctagag cctgtgctcc gcaacaagag aagccaccgc aatgagaagc       240
     ccgngcaccg caacgaagag tagcccccnc ttgccgcaac tagagaaagc ccgcgcncag       300
     caacgaagac ccaacgcagc c                                                 321
//
ID   HAT1_MD     repbase; DNA   ; MAM   ; 2999 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   HAT1_MD - an autonomous hAT transposon from Monodelphis
DE   domestica; consensus sequence.
XX
KW   hAT; DNA transposon; Interspersed Repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-2999
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-2999
RA   Gentles A., Jurka J.;
RT   "HAT1_MD, an autonomous hAT DNA transposon from M. domestica.";
RL   Repbase Reports 5(10), 306-306 (2005).
XX
CC   [2] (Consensus)
XX
CC   Copies average 82% similarity to consensus. The sequence lacks
CC   the canonical CA-TG termini and 8 bp TSDs of hAT transposons, and
CC   is probably incomplete. The consensus was reconstructed from the
CC   June 2005 release of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           747..2675
FT                 /product="HAT1_MD_1p"
FT                 /translation="MENPKNKKKRLSKGSGSSSSRPFQETWTEMYGIIEKN
FT                 GRSFCVLCTEMVVSRMWNINRHFETNHSQLLKKSEDERKEYISRQLHLYKS
FT                 QSNSILKFVKGSTNLTSASLSIAHSIAQHGKALSEGEFIKETLLRCAPVLF
FT                 HNMQNKDAIIKRISELPLSRNIIKDQIMRLNTNIQHQLKRDISNCKYFSIS
FT                 LDETTDVTSHAQLAIIGRYSDGLTMREELIKLVSVPTSTSGSEICKVVIQT
FT                 FRDLSIDISKVVSVTTDGAPNMVGKKVGFVKLFMEAIGHLIVPFHCIIHQE
FT                 ALCAKAGFTNLNDLMSVVTKIVNLIAARPLHKREFSALLLEVDSTYSGLLM
FT                 YNNVRWLSRGKVLERFVECFEEIKVFLEDKDLGNFPQLNDDKWVNTLMFFT
FT                 DLSVHINELNLKLQGFGKSIDVMFGYIKAFESKLKIFKRDVETKTYKYFPQ
FT                 VTKYFEKASAAVQNEMEPLHIKYQHVLDSLLDQFSDRFNQFRSLEQTMKII
FT                 KYPDVVVYSSLELNGFQWMQIDDLEMQLAEFQDSIWAQVFVDLRSKLENLE
FT                 RCHLENQEECHYEQEIWSAWNRLPDTFSTLKNIAMALLTIFPSTYFCETLF
FT                 SVLIKTNKRNRLTDEVSSACLGLKCTKYQPSIEDLANEIQQQKSH"
XX
SQ   Sequence 2999 BP; 959 A; 569 C; 626 G; 845 T; 0 other;
     ctaggcctga tggtgaacct atgacacatg tgtcagcact gacacacgta gccatttttg        60
     atgacacgtg gccgcataca gagaagtatg gggccgcatg ccgagaagga tgtttcatcc       120
     tcggctcctg cacggccagg tgcagtagcc gaggataaaa catttgctgt agtgtagtgt       180
     agacactctg tgctggaggt ctgtaggcca aaacaacaga actccggcac agagcatcta       240
     gttctgggac ttccggttag gccattaggg gatctttgac ctcacttctg gccggtggag       300
     cagggagcag cggaatgccg tgggggatgc atctctgggg gccctgtgat cgccattacc       360
     agcaaccaca taaccacagc aaccatcatc caatctactg ttctggggtg ttgtggattt       420
     ctaattgacc atcattactg agataagtga gggggaggct gggagaggtg agggcctgtg       480
     ctatgggtgc catttcccac cattagaaat agtggcagcc atcttaattt acataaggaa       540
     cgccatcttg cagcatagtg cagactccat ttcaccacta ttactgttgt gcatccttat       600
     taacccctat ttctgcttat taaccctgcc ctttcctaaa agacagttac atgtgccatc       660
     ttgtggtcag ttaggctagt taacccctaa ttgcctgcag ggctaacagg ctatctataa       720
     ttctatcttc tgtcactgcc cccctgatgg agaacccaaa aaataaaaaa aaaaggttaa       780
     gtaaaggaag tggtagtagc agtagccgac cctttcaaga gacatggacc gagatgtatg       840
     gcattataga aaaaaatggc agatcatttt gcgttctatg tactgaaatg gtagtaagca       900
     gaatgtggaa tataaataga cattttgaaa ctaatcattc ccagctcttg aaaaaaagtg       960
     aggatgaaag gaaggaatac atttccaggc agctacacct ttataagagc caatctaatt      1020
     ccatccttaa atttgtaaaa ggctctacaa atttaacatc tgcaagtttg agcattgctc      1080
     actccatagc tcagcatgga aaagcactca gtgagggaga atttattaaa gaaactctcc      1140
     taagatgtgc accagttcta tttcacaata tgcagaataa agatgcaatt attaagagaa      1200
     tatctgagtt accactcagt agaaatatca taaaagacca aataatgaga ctgaacacaa      1260
     acatacaaca tcaattaaag agagacataa gtaattgtaa atatttttcg atctctcttg      1320
     atgaaactac tgatgtcaca tcacatgctc agttggccat tattggtcga tattctgatg      1380
     gtctcacaat gagagaagag ttgataaagt tagtatcagt gccaacaagt acatcaggaa      1440
     gcgaaatatg taaggttgtt atacaaacat tccgtgacct aagcattgat atctctaaag      1500
     ttgtgtcagt gacgacagat ggggcaccaa acatggtggg gaaaaaagtc ggatttgtca      1560
     aattgtttat ggaagctatt ggacatctga ttgtgccttt tcattgtatt atccatcagg      1620
     aggctttatg tgccaaggca ggattcacca acttaaatga cttaatgtca gttgttacaa      1680
     aaatagttaa tttaatagct gctcgccccc ttcacaagcg agaattttct gcacttttac      1740
     tggaggttga ttccacctac agtggactgc tgatgtacaa taatgtaaga tggctgagcc      1800
     gaggcaaagt tcttgagcgc tttgtggagt gctttgaaga aattaaggta tttcttgagg      1860
     ataaggatct gggaaacttt cctcagctca atgatgataa gtgggtcaac accctgatgt      1920
     tttttacaga tctctctgtt catattaatg aactgaactt aaagttacaa ggttttggca      1980
     aaagtattga tgttatgttt ggatacataa aagcttttga aagtaaactt aaaattttca      2040
     agcgagatgt agaaactaaa acttataagt attttcctca agtaacaaag tattttgaga      2100
     aggccagtgc agctgtacaa aatgaaatgg aacccttgca tataaagtac cagcatgttt      2160
     tagactcgtt acttgaccag ttcagtgata gatttaatca atttagaagc ctagaacaga      2220
     ccatgaaaat aattaagtat cctgatgtag tagtctacag tagtttggaa ttaaatggtt      2280
     tccaatggat gcaaattgat gatttggaga tgcaacttgc agaatttcaa gacagcatct      2340
     gggctcaggt gtttgtcgac ttgaggtcaa agcttgagaa tctggaaagg tgccacttgg      2400
     agaatcaaga ggagtgccac tatgaacagg aaatttggag tgcctggaac cgattaccag      2460
     acacttttag caccctgaaa aatatagcaa tggctttact cacaattttt ccctctacgt      2520
     acttttgtga gaccttattc tcagtgttaa tcaaaaccaa caaaagaaac agattgacag      2580
     atgaagttag tagcgcttgc ttgggcttga agtgtacaaa ataccaacct tcaattgaag      2640
     atttagccaa tgaaattcag caacaaaaaa gtcactaata ggcaggttag ttaaagaatt      2700
     ccccctcccc ctcacttatc ttagttcatg gcaccccaca caagttaaat aatatcaaga      2760
     ccaacaaaag aaaccgactg acagatgaac aaagaagtca ctaagcaggt aagttaaata      2820
     attagttttt ggtttattaa atacagttat atattacaat tatacatttt tgttatttaa      2880
     actataaata tcatgaaatt atggtttttt tctcaaagtg acacaccacc cgagttatgc      2940
     tcagtttttt ggtgaatttt gacacaccaa gctcaaaagg ttgcccatca ctggcctag       2999
//
ID   CarERV2d1_LTR repbase; DNA   ; MAM   ; 724 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-724
RA   Smit A.F.;
RT   "CarERV2d1_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 bp TSD 12-13% subst.
XX
SQ   Sequence 724 BP; 217 A; 205 C; 132 G; 169 T; 1 other;
     tgatgaggga gcagaaggca agctgagggc aaagcacaag ctgacacccc gcaacccccc        60
     cccaccccag gtgggatatg tgtgacattc ctcaggcact cctggctgcc ctaaaactaa       120
     gggaagggaa aaacaaatgg ttaactgata gagatcacag tcctgcagga catgagtctc       180
     catcagttta caaatgtctt agtgatttac aaggaaaaag cattcttatc aatagcctaa       240
     cttccagaga cccatagact caatttcctg gagccctaac atcaccctcc cctccacagt       300
     gatgtgggaa acaaaggcag aagggaatgt aaataaaatn aaatttcctt ataacctgca       360
     gcccattgac aaatacttga ggcaggcaga gtataacatt cctccaggaa actcccaact       420
     gtcttaatgt taatgccttg ctagagggaa aaacaacctt agcttgacaa tagccaggcc       480
     tccagtatcc tgagagtctt ctttagcata tgaaagtcct tttggacacc tccctttttc       540
     cttacctccc ccaactccca agtatataat cagtcacccc tcacaacccc agtgcagcag       600
     ctctttctgc ccacgggtcc tgtccccgtg ctttaataaa atcacctttt tgcaccaaag       660
     acgtctcaag aattctttct tggccatcgg ctccggacct caccaacatt ccaaaactac       720
     atca                                                                    724
//
ID   ERV4_MD_I   repbase; DNA   ; MAM   ; 7896 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV4_MD, a class 2 endogenous retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERV4_MD_I;
KW   RNaseH; aspartyl protease; gag-pol; integrase;
KW   reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-7896
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-7896
RA   Gentles A., Jurka J.;
RT   "ERV4_MD, a class 2 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 381-381 (2005).
XX
CC   [2] (Consensus)
XX
CC   Copies of this consensus average 96-97% similarity to it,
CC   indicating that the element was active relative recently. There
CC   are four long overlapping ORFs putatively encoding typical
CC   endogenous retroviral proteins including reverse transcriptase
CC   and integrase. The corresponding LTR is deposited as ERV4_MD_LTR.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV4_MD_I_1p"
FT                 /translation="PISIRFYTLARGLARKWGSVCDNCVNEMGKTLSKETL
FT                 FVKELKNSLRERGIRVKKKNLFKFFCFIEEHCPWLILHGPGIHPLTWNKVG
FT                 KELNGLIKSGQEISDEYFSYYGLIRDILKEADTNKQVSHLLSLAEDAILDH
FT                 KTKIEEEEIPPEKDKRPPSLLDEPIENSSLREPLVPSKSKPRLYPVLYTNP
FT                 ESEDILNPTYQTELEEEAARYQDSNRLENRPPLQYKNKSPPYNLCGSLTPP
FT                 VFPVLPGSENLKEATKQLSQQVAELKNFLGLQKEVHTLTNQLHDLQIDIFR
FT                 PLIPKSKPPRLKDKTALAFPVVTRQQQAAQIPPEDISLPPSAESSDSEGAE
FT                 GDETDGEHPRQLQAHHSPVPRSIKN"
FT   CDS           0..0
FT                 /product="ERV4_MD_I_4p"
FT                 /translation="GQGRSGVAKFFTKFFIRVTDPPALQADKITWKSDSPV
FT                 WIDQWPLTSEKVQAAITLVQEQLSLGHLEPSTSPWNTPIFVIKKKSGGWRL
FT                 LQDLREVNKTMLPMGALQPGLPSPTAIPKGFSKIVIDIKDCFFSIPLDPAD
FT                 SPRFAFSIPIVNHIGPNPRFQWRVLPQGMANSPTLCQKFVAQSIDPVRTRY
FT                 PSAYIIHYMDDLLIAAPSSPLTQTIAQTIVCALQARGFRIAPDKVQTQYPF
FT                 TFLGFRLELDXLFSHKVSLTRSTLKTLNDFQKLLGDINWLRPYLQLAKADL
FT                 RPLEDILRGDADPSSPRSLTPAGEASLKKVEQAIATQNIGYFSPHLPLYLL
FT                 IFPTEFSPTGLLWQDPSPLIWIHLPMYNRKILAPYPDLIARLAMMGIRLST
FT                 RHFGRSPDHVVSPYNKEQLDWLKSQNDNWAILISTYQGILDNHMPSNKLLQ
FT                 FFTLTPFILTRQTRSSPIPGAPTVFVDGSKTGLAAIVMNNRPRSIKTPYES
FT                 AQLVELYAALTVFHSLPDTPFNLYSDSRYVVQSLLRLEIVPAVQPTTATFS
FT                 LFSQLQQAIRRRSCPFFAGHIRAHSGLPGPLSFGNDLADQHTRLAALVTTT
FT                 TPSPHPSTDPVSLATEAHRLHHLNSQTLRLAYKITREQARSIVKGCKNCVT
FT                 LLPEPHLGINPRGLLPGHLWQMDVTHVPSFARLKYVHVSIDTFSGFLFASA
FT                 QSGEATKHVIKHMFLAMSMMGKPLSIKTDNGPGYTSQAFKQFCSQLGIKHV
FT                 TGIPYNPQGQGIVERAHQTLKNTLFKLKTQETLYPLCGNQTLLLAHALFVL
FT                 NFLTLDEEGRSAADRHWHPHTTSDLAKVLWRDPLTGLWQGPDPVLTWGKGS
FT                 ACIFDAKANNARWVPSRLIKTFDSPAPSLNTTLQGPAPEISFVCFSGKYKM
FT                 IPICLILFLSICLSSTSPESPHLLVHQTWELINPINQLTITSVSSSHWPRG
FT                 RWFPDITVDLCTLGIPYKSSIHYCSPLVPGXQIQDQWAQHTQFPLYGCPGF
FT                 GQPDHCGGHSDGFCATWGCETIGTAHWIPXKDLITLARKASKPKXCSFNPP
FT                 NCNPLIIKFTNKGKTDPRWTEGLTWGLRLYKIGPDDVLLFTLRLRVTPITT
FT                 PMGPNFVLTDQRRPSYQYPQPPRPLSPTRFPSSTLSLXPTPKVPPGTADRL
FT                 LNLIDSSYLALNATAPNLTISCWLCLHPQPPYYEGIAFTDHPHNTSAPSPR
FT                 CALSPHRLTLAEVSGKGLCLGHPPSSHSHLCNVTLPISHSPHYLEAPNNTF
FT                 WACNTGLTPCISLQVFNTSSEFCVLIQLWPRITYHTDTALDKXLSPFPRIV
FT                 REPLSTIAIILGIGGLAAGIGTGTTALLQTQHLTALHSAMTSDLEALEKSV
FT                 SALEKSLSSLSEVVLQNRRGLDLLF"
FT   CDS           0..0
FT                 /product="ERV4_MD_I_3p"
FT                 /translation="WADISPGTGKRDAGLLREPLSSSLTRATAGSAGLDLC
FT                 ASTTRILTPEEGPIVLPTGKFGPPPPGMFFLVIGRALTTLQGVVVHPTLVD
FT                 NDYTGEIKIIIESPHGPVTIPAGKRLAQALPLPMIGNFPAVAHTRGPSSPG
FT                 SSNIYWVQQLTESRPTLQLKIEGKTFTGLLDTGADSTVISQAHWPRSWPLQ
FT                 PSSTHLSGIGQVQDTLQSSKILNWQDTEGNRGTTRPYVVAGLPVNLWGRDI
FT                 LAQMRLLMVSPSDPVTTMMLKSGYLPGKGLGKREQGLPHPISFRPHKDREG
FT                 LGLQSFSQNFS"
FT   CDS           0..0
FT                 /product="ERV4_MD_I_2p"
FT                 /translation="ATSSSPQSRTPIYKKLKFKHIKDLHSAVKNYGLNAPF
FT                 TLSILEGLGGEGHMLPSEWSKVVQSVLSRGQFLIWKAEFLERAENQAKLNL
FT                 KNAQTATWTIDKIVGRNRFALENQQMRLPPGLLMQTAHAAMAAWRAVPAAG
FT                 SVTAPLSKILQGPNEPYAQFVAKLLETAERVLGQDGADNPMVRHLAIENAN
FT                 SACKAALRGKARDLDLDGMIRLCNDIDAYDHKINKSISLAIGAAIQASRPN
FT                 TPRNCFKCGQPGHFARQCPSGQNPRQAPAPIIAPPKPPPSICPKCRKGRHW
FT                 ARDCRSRTTFDGQIFPPVQGNGMRGSFGSPCPAPLLEPQQVAQAWTSVPPP
FT                 PEY"
XX
SQ   Sequence 7896 BP; 1988 A; 2410 C; 1534 G; 1943 T; 21 other;
     gatatctggc gcccaacgtg ttgggtttga gtaagacagc ttaccggacg actgagaaac        60
     aaattccgcg gacaaagtaa sggtagaggc tgaacggaca gccttgagat aagggtaagt       120
     cgtcccatcc cccataggca taaaaaattg agagtgatta ccccagagtg actgttgtgt       180
     gactgtgtgt atgattgcag agaggagagg aaactcagtc cacgattcgc atacgagtaa       240
     cagggcgatc tcctgatggg ggtttaaacc atccgcctaa gctcaagcga cgtggtccat       300
     cccgttctgg ggtgagtgaa aggccttggc cggaccgact ctgactgagc cctcraatcg       360
     ctcacgagtg ttgacccatt agtatccgtt tctataccct cgcgagagga ttggcgagaa       420
     agtggggaag cgtatgtgat aaytgtgtga atgagatggg gaagacactc tcaaaagaaa       480
     ctctatttgt taaagagtta aaaaatagtc tcagggagag aggtattagg gtaaaaaaga       540
     aaaatttatt taagttcttc tgctttatag aggaacattg cccctggctc attctacatg       600
     gcccgggaat tcaccccctt acttggaaca aagtgggcaa agaattgaac ggcctaataa       660
     aatcaggcca agagatctcc gatgaatatt tttcttacta cggactaatc cgtgatattc       720
     ttaaagaagc cgacactaat aaacaggtct cccacctcct tagcttagct gaagatgcta       780
     tcttagacca taaaacaaaa attgaggagg aggaaatacc accagaaaaa gacaaacgcc       840
     ctccttccct cttagatgaa ccaattgaaa attcctccct tagggaaccc cttgtccctt       900
     ccaaatccaa accccgcctt tatcctgttc tatatacaaa ccctgaatca gaggacatac       960
     ttaatcccac ttatcagaca gagctagaag aagaggccgc ccgctatcag gacagtaatc      1020
     gcctggaaaa caggcccccc ctgcagtata aaaacaagtc tcccccgtac aatctctgtg      1080
     gcagcctcac tcctcctgtt tttcccgtac tccctggctc tgagaatctt aaagaggcca      1140
     caaaacaact cagccagcaa gttgctgaac ttaaaaattt cctaggactt caaaaggagg      1200
     tgcatacatt aactaaccaa ttacatgatc tgcaaataga tattttccgg cctctgatcc      1260
     ctaagtccaa gccacctcga ttaaaagata agaccgctct cgccttcccg gttgttacta      1320
     ggcaacaaca ggctgctcag attccacccg aggacatttc cctcccccct tctgccgaat      1380
     cctctgactc cgaaggagca gagggagatg agaccgatgg tgaacaccct aggcaacttc      1440
     aagctcacca cagtcccgta ccccgatcta taaaaaatta aaattcaaac acattaaaga      1500
     cctccattca gctgttaaaa attatggcct taacgctcct tttacactct ccattctgga      1560
     ggggcttgga ggagaaggac acatgctccc ctccgaatgg tccaaggtag tgcagtccgt      1620
     cctctccagg ggacaattct taatttggaa ggcagaattc cttgaaaggg cagaaaatca      1680
     ggctaaactt aacttgaaaa atgcccagac agccacttgg acgattgaca aaatcgtcgg      1740
     ccgtaaccgc tttgcattag aaaaccagca aatgagatta ccccctggct tgctcatgca      1800
     aactgcacat gctgctatgg ctgcttggcg ggcagttcct gccgctgggt cagtcacagc      1860
     acccctctca aaaattctcc agggacccaa tgagccatac gctcaatttg ttgcaaaact      1920
     tttagaaacc gcygaaaggg tcttgggcca agatggagca gataacccga tggtgagaca      1980
     tttggcaatc gaaaatgcta attctgcctg taaggccgcc ctaagaggaa aagcaagaga      2040
     tcttgatcta gatgggatga tccgcttatg caatgatatt gacgcttatg atcacaaaat      2100
     aaacaagtcc atctccttag ccatcggggc agccatccag gcttctcgcc ccaacacccc      2160
     ccgtaactgc tttaaatgcg ggcaacctgg ccattttgca cgtcaatgcc cttctggaca      2220
     aaatcctagg caggcccccg caccaataat agcccccccc aaaccaccac ctagcatttg      2280
     cccraagtgt aggaagggcc ggcactgggc ccgagactgc cgatccagaa ccacctttga      2340
     tgggcagata tttcccccgg tacagggaaa cgggatgcgg ggctccttcg ggagcccctg      2400
     tccagctccc ttactcgagc cacagcaggt agcgcaggcc tggacctctg tgcctccacc      2460
     accagaatat tgacacctga ggagggccca atagtcctcc ctactggcaa attcggacca      2520
     ccaccccctg gtatgttttt cttggtcatc ggtagagcac tcaccaccct gcaaggtgtt      2580
     gtagtacatc ccacccttgt cgataatgat tacacagggg aaataaaaat tatcatagaa      2640
     tccccacatg gccctgttac catccctgca ggcaaacgct tagctcaagc cctccccctc      2700
     cctatgattg gcaattttcc tgcggtagcc cacacacggg gcccttcctc cccaggctcc      2760
     tccaatattt actgggtgca gcaacttact gagtcccggc ccactctcca gttgaaaatc      2820
     gaagggaaaa ccttcactgg attactagat acaggagcgg attccactgt tatctctcag      2880
     gctcactggc cccgctcctg gccccttcaa ccttcatcta cccatctatc aggaataggc      2940
     caagtccaag acacccttca gagctctaag atccttaatt ggcaagatac tgagggcaat      3000
     agaggcacca cacgcccata tgtagttgca gggcttcctg tcaatctctg gggcagagac      3060
     atcctagccc aaatgcgact tctcatggtt agccctagtg accctgtcac caccatgatg      3120
     ttaaaatctg gataccttcc aggaaagggc cttggaaaaa gggaacaagg cctcccccac      3180
     cccatttcct ttcgacctca taaggacagg gaaggtctgg ggttgcaaag tttttcacaa      3240
     aatttttcat aagggtcact gatcctcctg cactccaggc tgataaaatt acatggaaat      3300
     ctgactcccc tgtctggatt gatcagtggc ctttaacatc tgagaaggtt caggctgcca      3360
     taacgctggt gcaggagcaa ctttccttgg gtcacctcga accttctacc tccccctgga      3420
     acacacccat tttcgttatc aaaaagaaat ctgggggatg gaggctcttg caggacctaa      3480
     gagaggtcaa taaaactatg cttcccatgg gggctttaca accaggcctt ccatctccaa      3540
     ctgccatccc aaaaggtttt agtaaaatag tcatcgatat caaggactgt ttcttttcca      3600
     ttccccttga cccagccgac agtccccgct tcgcattttc tatccccata gtyaatcaca      3660
     ttgggcccaa ccctcggttc caatggcgtg tcctccccca gggaatggct aactccccca      3720
     ccttatgtca aaagtttgta gctcagtcca ttgaccctgt aaggacacga tacccttcag      3780
     cttacatcat tcattatatg gatgacctcc tgatagcagc tccatcctcc cccttaacac      3840
     aaactatagc tcagaccatc gtatgcgcac ttcaggcccg cggcttcaga atagcccctg      3900
     acaaggtcca gacccagtac cccttcacct tcctgggatt ccgccttgag cttgactyct      3960
     tattttcaca taaggtttca ctcacacgct ccactctcaa aacccttaat gatttccaga      4020
     aacttctagg ggacatyaat tggctccgcc cctatttgca acttgccaag gcggaccttc      4080
     gccctctgga agacatcctt cgaggggatg ctgacccctc ctctcctcgt tccctaaccc      4140
     cagcaggcga agcttccctt aagaaagtag arcaagctat agctacacag aacattgggt      4200
     atttttctcc ccaccttccc ctttaccttc tcatctttcc cactgaattc tcccccacgg      4260
     gacttctatg gcaagatccc tctcccctca tttggatcca cctccctatg tataaccgga      4320
     agattcttgc cccttatcct gacctgatcg cccgattagc aatgatgggc atccgtctct      4380
     ccacccggca tttcggccgc tcccctgacc atgtggtttc cccctataac aaggagcagc      4440
     ttgactggct caaatctcaa aatgataatt gggctatact catctctacc taccagggca      4500
     tcttggacaa ccacatgccc agtaataaat tgttgcagtt tttcaccctt acccccttca      4560
     tacttacacg ccaaacccga tcctcgccta tcccgggggc acccacggtc ttcgtggacg      4620
     gctctaaaac tggccttgcc gccatagtta tgaataaccg cccccgctct atcaaaaccc      4680
     cttatgagtc tgcacagctg gtagagcttt atgctgctct aactgtcttc cattccctgc      4740
     ctgatacccc atttaacctc tactcggata gcagatacgt tgttcaatcc ctgctccgac      4800
     tcgagattgt tcccgctgtt cagccaacaa ccgccacctt ttcccttttt tcccaacttc      4860
     aacaagccat tagacggcgg tcctgtccct ttttcgcggg tcacatacgt gcccactccg      4920
     gcctcccagg ccctttgtct ttcgggaacg atcttgcgga tcaacacact cgcttagctg      4980
     ccttggttac cacgactacc ccctctcccc atccctcaac cgaycctgtc tcccttgcaa      5040
     cagaggcaca tagacttcac cacctcaact ctcaaaccct tcgcctggcc tacaaaatca      5100
     ccagggaaca ggccaggtca attgttaaag gttgcaagaa ttgtgttact ctcttgcctg      5160
     aaccccatct ggggatcaac ccccgaggtc ttctccccgg ccacctatgg caaatggacg      5220
     ttactcacgt cccctctttc gctagactca agtatgtcca tgtctccatt gatacgttta      5280
     gcggctttct ttttgcatct gcgcaatccg gcgaagccac aaagcacgtt atcaaacata      5340
     tgttccttgc tatgtccatg atggggaaac ccctctccat caagacagat aatggccctg      5400
     gctacaccag ccaggccttt aaacaattct gttcccagtt aggcataaaa catgttacag      5460
     gtatccctta caacccacaa ggacaaggta ttgttgaacg tgcacaccaa accctcaaga      5520
     acaccctttt caaacttaag acccaggaga ccctttaccc actgtgtggc aatcagaccc      5580
     tgcttcttgc acatgcactt tttgttctta acttcctcac tctggacgag gaggggcgct      5640
     ctgctgctga tcgccactgg catccacaca ccacatctga tctggcaaaa gtcctttggc      5700
     gagaccccct cacaggcctt tggcaaggcc ctgaccctgt cctcacttgg ggaaaaggct      5760
     cagcttgtat ctttgatgcc aaagcaaaca acgcccgctg ggtcccctcc cgtctgataa      5820
     agacctttga ctcccctgcc ccttccctta acacaaccct ccaggggcct gcccctgaga      5880
     tttcytttgt ttgcttttca ggaaagtaca aaatgatccc gatttgcttg atcctgttcc      5940
     tgagcatctg cctctcatca acgagccctg agagccctca tcttctcgta caccaaacat      6000
     gggaactcat taatcctatt aatcaactca ccatcacctc cgtctcttct tcacattggc      6060
     cgcgtggacg ctggttcccc gatatcacag ttgatctttg tacccttggc attccctaca      6120
     agtcatcaat tcattattgt tctccccttg tgcctggccy ccagattcag gatcaatggg      6180
     cccagcatac ccaattccca ctatacgggt gccctggctt tggacagccm gatcactgtg      6240
     ggggtcactc agatggattc tgtgccactt ggggatgyga gacaattggc acagcccatt      6300
     ggattcccra taaagacctt atcacactcg cccgmaaagc ctccaagccc aaamactgtt      6360
     ctttcaaccc gcccaattgc aaccctctta ttattaaatt caccaacaag ggtaaaacgg      6420
     atccccgttg gacggaagga ctcacctggg gactgcgcct ttataaaatt ggccccgatg      6480
     atgtccttct cttyacactc cgactgcgcg tgacccctat taccaccccc atgggtccta      6540
     attttgttct taccgaccaa cgccgccctt catatcagta ccctcagccc ccccgacccc      6600
     tctcccccac ccgattcccc tcctctactc tctcacttrc ccctactccc aaagtacctc      6660
     ctggtaccgc tgatagactc ctcaacctca ttgatagctc ctatttggct ctgaatgcta      6720
     ccgccccaaa ccttacgatc agctgttggc tatgtctcca cccgcagccc ccatactatg      6780
     aaggaatcgc ctttactgat caccctcaca acacctctgc cccttcccct cgctgcgccc      6840
     tgtcccccca ccgcctcacc cttgccgaag tctccggaaa aggcctttgc ctaggtcacc      6900
     ccccttcctc tcactcccat ctttgtaatg ttacccttcc catctcccac tcccctcatt      6960
     atttagaagc ccccaataac accttttggg cctgcaacac cggcctcacc ccctgcatct      7020
     cccttcaggt ctttaatacc tcctccgaat tctgtgtgct tatacaatta tggcccagaa      7080
     ttacctatca cacagacacc gccttggata aamttttgtc tccattccct cggattgtac      7140
     gggaacccct ctctactatt gccattattc taggtattgg tggtcttgct gccggcattg      7200
     gtaccggcac caccgctctc ctacagaccc aacaccttac agctttacat tctgctatga      7260
     catctgacct tgaagcccta gaaaaatctg tctctgcttt agagaaatcc ctatcctccc      7320
     tctcagaagt tgtactgcag aacagacgtg gcctcgacct gcttttttaa aagaaggggg      7380
     attgtgtgca gcccttaaag aagaatgttg cttttatgct gaccacacgg gcrtggtcag      7440
     agaatcaatg gcaaaattaa gagaacgcct agcccttaga aaaaaggagg ccgaggccca      7500
     agaaggatgg tacaacaatc ttttgagaag tccccttggc tttctaccct aattcccaca      7560
     taatagttcc ctttattatc atcctcctaa tctcaccttt ggcccttggg ctttccaacg      7620
     cctgactgga tttatcaaag gatttatcaa atcaaacatt gactcagccc ttaaagttcc      7680
     ctacggtcca atatcatcgt atcgaaatag cagatactga ccaaccacac acccctactg      7740
     atcgtctcca atttactagc agggcggtaa cccaatgacg ggaatagcac aggtcctcga      7800
     cccctgatga tcgagtaact ccccctgtgt agcctaagac aggggccgtc gctgcggtcc      7860
     tgacttaaaa ccttccctct aataaaaaag aaaggg                                7896
//
ID   CarLTR4_LTR repbase; DNA   ; MAM   ; 439 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-439
RA   Smit A.F.;
RT   "CarLTR4_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   ( 11 elements ) 16-17% subst; 4 bp TSD. Distant matches to MER65
CC   and LTR23.
XX
SQ   Sequence 439 BP; 117 A; 103 C; 91 G; 126 T; 2 other;
     tgtgaaaggt gaaatgaaat ggggtcactt atgtcaaggg gttttaaaat ggagccggga        60
     ggccattaag gaggtgggcc ttatgcacgt cctcaccggg tggaaccatg aacttttgaa       120
     ctgggccaaa ccgcaaatat tccaaggact cngcccgaac acctgcaact tgctacagta       180
     agagactttt gcttagtgat agccttagca accaattatg ttcagccaag attagttttc       240
     tgccgccaac accaatcaaa attctttgta aacaacatat acaagcattc ccttttgtct       300
     ttaaaaaccc ctgacttttg ttccctgggg ggacacnatt tgggttgcta cccaaatctg       360
     tgctccccga attgcaattc tgagacccca aataaatgct tttgttttat tttagctctg       420
     cctcttttct cggtcgaca                                                    439
//
ID   ERV17_MD_I  repbase; DNA   ; MAM   ; 6935 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV17_MD, a class 2 (HERVK) type endogenous retrovirus from
DE   Monodelphis domestica - consensus of LTR sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; Non-autonomous;
KW   ERV17_MD_I; ERV17_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-6935
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-6935
RA   Gentles A., Jurka J.;
RT   "ERV17_MD, a class 2 (HERVK) type endogenous retrovirus from the
RT   opossum M. domestica.";
RL   Repbase Reports 5(11), 357-357 (2005).
XX
CC   [2] (Consensus)
XX
CC   Internal consensus of the class 2 ERV ERV17_MD. The LTR is
CC   deposited as ERV17_MD_LTR. This consensus was reconstructed from
CC   the June 2005 release of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV17_MD_I_1p"
FT                 /translation="IWRPKFRDINAIRNPDSFAGQRMTQSNGLCDNILDWV
FT                 SRANLGQSQERSVFTGFLCSIIFSISFLCFVGYFSGGMGNSVPVLLQDGGW
FT                 QAEHLIQAALTAHGVKVQKKMLKKFVGYVRQLAPWFPEGEIISSSEWERVG
FT                 SKFGSEGETPPPDYAVIFNVIKSCIEDPEANKKMQAVLQMEVEEEDEEGEV
FT                 SGEVGNQRKNISCPPFASGARLYPSLIQENFPETGTVFKNKPTVTSSGEMR
FT                 QGQVGKFLRVAELEKALGDLDTGQAQLFPVLEDVNTQTRRFTPMPLKVLKE
FT                 LKEACTKYGPQAAYTLSLLELIAAENLTPHDWKQVASVSLSQGQAVQWRAI
FT                 WKEILEQERFRMEQTMMPGGAPTLDQLIGEGPNQFPQHQIGYIPQLYAVIA
FT                 SAAIKAWKGMEGIPKLDFNKLRQKSDQAFEDYVAEVQKAVERTLGTVQGLE
FT                 ELIKTIVKQNATPDYRQVLINLPASATLEDMIIKALEVKSQSHQARTQAAM
FT                 VGAAVQQAMKSQGKGQIRCYGCGKLGHMKKNCWSNLSGTKPKPSQKCQKCY
FT                 KGYHWNRDCRSGNGQGGLREAPTNNPRAFPAMYQTSLDWEKHQAPFRSTDQ
FT                 PFQG"
FT   CDS           0..0
FT                 /product="ERV17_MD_I_2p"
FT                 /translation="HGFFIGAVEELRAVPLTWKNDKPIWVDQWPLTASKLS
FT                 ALKEIVQEQLTKGHIRPSTSPWNSPVFVIQKKSGKWRMLTDLRRVNESMEE
FT                 MGALQPGLPVLSWIPINWKIWAIDLKDCFYTIPLQEKDCKRFAFSVPSINL
FT                 QEPMDRYEWVILPQGMKNSPTMCQQYVDRALRSIRSKYPKVMMIHYMDDIL
FT                 LAATTVEQLEALFPVLRQHLSEFNLVIAEEKIQKGEEISYLGSLIGPREIK
FT                 PQKIQIRMDKLQTLNDFQKMLGDINWIRPFLKLTTEQLRPLFQLLEGDANL
FT                 KSPRTLTPEAISALKNVEEALNTALLTRFDPQQPVEVKILRTPHVPTAAVV
FT                 QRDKVILWIHSKSQSGKAIPLYPLLMGQIIKRAIKVVLQGIGQYPEVIHIP
FT                 VTKAQLQDWIESYTEWASLLQFPCFFRPQTNLSPFWKIFNQYCIVSNPISN
FT                 HPVDGPNIFVDANPQAAAIFSPPNQPMIFRTPFSSTQQNELAAALLALWKH
FT                 PESFNLIVDSQYVAQALPKLTNAVIQSKRGTVNLIFSKLQHVLRDRLRSVY
FT                 VLHVRSHTSLPGPIILGNHIVDQALEAPLLSFSSPAAEARKAHDKFHQSAR
FT                 ALQKQFQITKAQARLIVKACPKCVPFQPASNKEGAQNPRGVHPLHIWQMDV
FT                 THVNSFGLAKYVHVTIDTYSGFLWASALRSESARAVKTHCLLTFQTQGPPE
FT                 ILKTDNGPAYTSEAFATFCRDWHITHITGIPYNPTGQAMIERANRTLKMVL
FT                 VKQKGGAWRSPQDRLATAIFTINNLIWTQQITKAEKFFEHWHRMVPAQRED
FT                 TLVPAGDSDYVMWKDENNTWYGPDRVLIRGKGFLCVSTGQGQRWIPRRWTR
FT                 PILQSGENETSTSTKGQEKAPGATEKRETTDPVPGDSDEHSQHG"
FT   CDS           0..0
FT                 /product="ERV17_MD_I_3p"
FT                 /translation="KTXPVCFEHPACIPLVNLTDHFYGAPNYTDKTGPHRV
FT                 NEGWTFTAWGKISYYGWKGVLQNTRKDSGYLKNRSFIEQKTRQCSYVPEWD
FT                 LPFSGKQSHGVFPPFLECDRHDLDMVKFHNVTFFSQHNDSACHNDSFPEAP
FT                 DKRNHGCFIGGFATPGWRTSKMYNNRKVGYNYAKIPIAMKGVVVMAYRVLE
FT                 FPGNIFTTYEGSTNPRHHYMTGSYNITACLEEDFAFMIGPQNSISIKWIGQ
FT                 AWNITCLECNITECITQTPERYTVLVVRRPPLALLTARHSGGWYHSPADRA
FT                 MERLSQLISSRKKRCISCIVLGIVALIAALTATTVSSVSLAQSVANVRVLE
FT                 HDAEYLHGLAQNVTKALHIQQDINTRVFYALQQISKDVLLLTNQVEILAIK
FT                 GKLRCDYRYSAFCLLPVKVNTSDAFEKIRNDLQGLWLKGNISENIQQLNHI
FT                 IEEMDSSLAEDLYPEHIADSIYNWIKSGQSWLSPLAQMSITILTFILFIVI
FT                 LLVLLPCLFQLLVSSLGRIGQVLTQHRVLLQNKKGE"
XX
SQ   Sequence 6935 BP; 2068 A; 1386 C; 1529 G; 1950 T; 2 other;
     atttggcgcc cgaaattcag ggacataaat gccattcgta accccgattc ctttgctggt        60
     caaaggatga cgcagagtaa cgggctttgt gacaatatct tggattgggt aagcagagca       120
     aatttgggac agagccaaga gagatccgtc tttacgggct tcctctgttc tataatcttt       180
     tctatctcct ttctttgttt tgtaggttat ttctcaggag gtatgggaaa ctcagttcct       240
     gtccttttac aggatggggg gtggcaagct gagcacctta ttcaagctgc cttaacggca       300
     catggagtta aagtgcagaa aaagatgtta aagaaattcg tgggctatgt aagacaatta       360
     gcaccatggt tccctgaagg agagattata tctagttcgg aatgggaacg tgtaggatca       420
     aagtttggtt ctgaggggga aactccaccc ccggattatg cagttatttt caatgtcata       480
     aagtcatgta ttgaggatcc agaagctaat aagaaaatgc aagctgtttt acaaatggag       540
     gttgaggaag aagatgagga aggagaagtt agtggggagg tcggtaatca gagaaaaaat       600
     atttcttgtc cgccgtttgc ttcgggggca aggctgtacc cctccctaat tcaagaaaat       660
     tttcctgaaa ctggaacagt gtttaaaaat aagccaacag tgacatctag tggtgaaatg       720
     aggcaaggac aggtgggaaa gtttctgaga gtagccgagc tggaaaaagc attaggagac       780
     ttagacacag gacaggcaca attattcccg gtattggaag atgttaacac tcagactagg       840
     agattcactc ccatgccatt gaaagtcttg aaagaattaa aagaggcatg tactaaatac       900
     ggtcctcaag cagcctatac actttcttta ttggagctta tagctgctga gaatcttact       960
     cctcatgatt ggaaacaggt agcaagtgtt tcactctccc agggacaggc agtacaatgg      1020
     agagccattt ggaaagagat attagaacag gagcggttta ggatggaaca aactatgatg      1080
     cctggaggag cccctacatt ggaccaactc ataggagaag ggccaaacca gttccctcaa      1140
     catcagatag ggtatattcc tcaattatac gcggtgattg cctctgcagc tataaaggca      1200
     tggaaaggaa tggaagggat cccaaagttg gattttaata aactgaggca gaagtctgat      1260
     caagcttttg aggattatgt ggcagaagta cagaaggcag tggaacggac tttgggaaca      1320
     gtgcaaggat tagaggagtt gataaaaacc atagtcaagc agaatgctac tcctgattat      1380
     agacaagtgt taattaattt gccagcttct gcaactctag aggatatgat tattaaggct      1440
     ctggaggtaa aatctcagag tcatcaggct cgcactcagg ctgccatggt gggagcggca      1500
     gtacaacaag ctatgaaaag tcagggaaaa ggtcagataa gatgctatgg atgtggaaaa      1560
     ttaggccaca tgaagaaaaa ttgttggtct aatttgtcag ggactaaacc taagccttct      1620
     caaaaatgtc agaaatgtta taagggatat cactggaacc gagattgtag gtcgggaaac      1680
     gggcaggggg gccttcggga ggcccctaca aacaatcccc gagccttccc tgccatgtac      1740
     cagacctctc tcgattggga aaaacatcaa gctccttttc ggtccaccga tcagcccttt      1800
     cagggataga agggcaagag caggacttcc ctataagacc tgaaaaacct gtactcctgt      1860
     tgccttttga aaaccttaag gtttggggca ttggaatacc tatggctggg gaactctgtt      1920
     ctgctgttag taatgttgat gtcatgccag aaaagataac taaggaaatg tggcaagact      1980
     ccaaaataca gttaactctt acaaatctta ttggaacttt aatagtgatt caagatgtct      2040
     tagcctttgt gaaatcaaat accactgtgt gctggactga aagagttagt cagcacagac      2100
     ctatgcttat tgtggaaata gagggtattt ctattgatgg attagttgat tctggggcgg      2160
     acactacagt cctcagtatg cctgacttca agtctattcc gtggtcaggg agtattgtag      2220
     aagttcccgt gacaggcgtg gggggagtca ccactatggg aaagacttcc agccctctct      2280
     cctggcgctg tgggaattct caagggctaa ttacaccttt agtcaatgct aaacttgata      2340
     ccacgctttg ggggagagac atattgcaag gcatgaagtg cattattagc acggattttt      2400
     cataggggcc gttgaagagc tgagagccgt cccattaaca tggaaaaatg ataagcccat      2460
     atgggtagat caatggcccc ttacagcttc taagctctca gcattaaaag aaatagttca      2520
     agagcaatta acaaagggac atattagacc aagtactagt ccctggaatt ctcctgtgtt      2580
     tgtaatacag aaaaaatctg gcaagtggcg tatgcttact gatttacgcc gagttaatga      2640
     gtccatggag gagatggggg ccctacagcc agggctgccg gttctttctt ggatacctat      2700
     taattggaaa atatgggcta tagatttgaa agactgtttt tacactattc cgctgcagga      2760
     aaaggactgc aagcgttttg ccttctcggt ccctagcatt aatctccaag agcccatgga      2820
     tcgttatgaa tgggtaatcc tgcctcaagg aatgaaaaat agccctacta tgtgtcaaca      2880
     atatgtagac cgagccctca gatctattag aagtaaatat ccaaaagtca tgatgattca      2940
     ttatatggat gatattcttt tggcagcaac tactgtagaa cagcttgaag cactatttcc      3000
     cgtgcttcgg caacatttgt ctgaatttaa ccttgtaata gctgaagaaa aaattcaaaa      3060
     aggagaagag attagttatt tagggagtct aattgggcct cgtgagataa agcctcagaa      3120
     aatacagatt cggatggata aattacaaac tttgaatgat tttcaaaaaa tgttagggga      3180
     tattaattgg atacgtcctt ttcttaaact tactacagaa caattacgtc ctctttttca      3240
     attattagag ggagatgcta atctaaaatc tcccagaaca ttaacccctg aggccatctc      3300
     tgctttaaaa aatgttgaag aagctcttaa tacagctctt ctgacacgct ttgaccctca      3360
     gcagcctgtg gaggtcaaaa ttttacgaac accacatgtt cctacagcag ctgtagtcca      3420
     gcgtgacaaa gtgatattat ggatacattc caaatctcaa tcaggcaagg caattcctct      3480
     ttatccctta ttgatgggac aaattattaa aagggctata aaagtagttc ttcaaggaat      3540
     aggacaatat cctgaagtta ttcatattcc tgttacaaaa gcacaattac aggattggat      3600
     agaatcttat acagagtggg ccagtctttt gcaatttcca tgtttcttcc gcccacagac      3660
     taacttgtct cccttttgga aaatttttaa tcaatactgc atagtttcaa atcctatttc      3720
     caatcatcca gttgatggtc ctaatatttt tgtggatgcc aacccgcaag cagctgctat      3780
     tttttctcct cctaatcagc ctatgatttt tcgtacccct ttttccagca ctcaacagaa      3840
     tgaacttgca gcagctctat tggctttgtg gaaacatccg gagtccttta atcttattgt      3900
     tgattcccag tatgttgcac aagccttacc taaattgaca aatgcagtga tccaatctaa      3960
     acggggtaca gtcaatctta ttttttcaaa attgcagcat gttttacgtg atcgcttgcg      4020
     ctcagtgtat gttcttcatg tccgtagtca tacttctttg cccggtccga ttattttggg      4080
     caatcatatt gtggatcagg ctcttgaagc cccgttactg tctttttcat ctccagcagc      4140
     cgaagctcgg aaagctcatg ataaattcca tcaatctgct cgagccttac aaaaacaatt      4200
     tcaaataact aaggcacaag ccagacttat tgtcaaggct tgccccaagt gtgttccatt      4260
     tcaacctgca agcaacaagg agggtgctca gaaccctcga ggagtgcatc cattgcacat      4320
     ctggcagatg gatgtgactc atgtcaattc ttttggtctt gccaagtatg tccatgttac      4380
     tatagataca tattccgggt tcttgtgggc ctcggctcta cgatctgaat ccgctagggc      4440
     agtgaaaact cactgcctct tgacttttca aacacaaggt ccccctgaaa ttctaaaaac      4500
     tgataatggc ccggcttaca cttctgaagc ctttgccaca ttttgccgtg attggcatat      4560
     tacacacata acaggcatcc catacaatcc tactggtcaa gcaatgattg aacgtgccaa      4620
     ccgtaccttg aaaatggtgc ttgttaaaca aaaaggggga gcttggcggt cccctcagga      4680
     tcgtttggcc acggcaattt ttactattaa taatcttatt tggacacaac aaattactaa      4740
     agctgaaaaa ttttttgaac attggcaccg catggtaccg gctcagcggg aagatactct      4800
     tgtcccagct ggtgattcgg actatgttat gtggaaggat gaaaataaca cctggtatgg      4860
     tcctgataga gttttaatca ggggaaaagg gtttctttgt gtctccacag gtcaaggaca      4920
     acgatggatc ccccgtagat ggaccagacc tatcctgcag tctggagaaa atgaaacctc      4980
     gacgtcgacc aaggggcagg aaaaggcccc gggtgcaaca gagaaaagag agacaactga      5040
     tcctgttcct ggcgactctg atgaacactc tcaacatggc taatacagag acacagactc      5100
     attgggtttt gtgggaaaaa cccccatgga ttaactttgt agaatttgag gaggactttc      5160
     ctgaggtatc tcttcatgta caacaatttg gtccaggatg gaaatggact gctaagaatg      5220
     gagagactgg ggaaagatct gctcccaggt ccccctctag ctttcaccct ccgttcgagg      5280
     ctatgccaga acgaggatct tacttaaaca taccatttaa ctggactgga cttactaaaa      5340
     aaccmccccg gtgtgttttg aacatcctgc atgtattccg cttgttaatc taactgatca      5400
     cttttatgga gctccaaatt acacagataa aacaggaccg caccgggtga atgagggatg      5460
     gacttttaca gcctggggaa agatttcata ttatggatgg aaaggagtat tacagaatac      5520
     cagaaaagat tctggttact taaaaaacag atcttttata gaacaaaaaa ccaggcaatg      5580
     ttcttatgtt cctgaatggg acctcccttt ttcgggaaaa cagagtcatg gggtatttcc      5640
     accattttta gaatgtgacc gacatgatct tgatatggtc aaatttcata atgttacttt      5700
     cttttctcaa cataatgatt cagcatgtca taatgattca ttccctgaag ccccagataa      5760
     acgtaatcat ggttgcttta taggaggatt tgctacccca gggtggagaa catccaagat      5820
     gtacaataac cgtaaggtrg gatacaatta tgctaagatt cccatagcca tgaagggggt      5880
     agtagttatg gcctacaggg tactagaatt tcctggaaat atatttacca catatgaagg      5940
     tagtaccaat ccccgacatc attatatgac aggctcttac aacatcactg cctgtctaga      6000
     agaggatttt gcttttatga taggacccca gaatagtatt agcattaaat ggataggaca      6060
     ggcttggaat attacttgtc tcgaatgcaa cattactgag tgcataacac agacccctga      6120
     gaggtacact gttttagtgg tacgtaggcc tcctttagcc ctgctaacag ctagacattc      6180
     agggggatgg tatcactcac ctgcagatag agcaatggaa agattatctc aactaattag      6240
     ctctaggaaa aagagatgta tttcttgcat agttttaggt attgtagctt tgatagccgc      6300
     ccttactgct acaactgtca gtagtgtttc tctagcacaa agtgtagcta atgttcgtgt      6360
     cctggaacat gatgcagaat atttacacgg gcttgcacag aatgtaacca aggctttgca      6420
     tatacagcaa gatattaata caagggtttt ttatgcttta caacaaatat ctaaagatgt      6480
     attgttacta actaatcaag tagaaatttt agctattaag ggtaaattac ggtgtgatta      6540
     tcgttattca gctttttgtc ttcttcctgt taaagttaac acgtctgatg catttgaaaa      6600
     aattagaaat gatctacaag gtctttggct aaaaggcaat atctctgaaa acatccaaca      6660
     attgaaccat attattgaag aaatggatag ttccttagct gaggatcttt atcctgaaca      6720
     tattgctgat tctatataca attggattaa atcaggccaa agttggctgt ctcctttagc      6780
     tcaaatgagt ataaccatat tgactttcat actgtttata gttatcttac tggtccttct      6840
     tccctgtcta ttccagctcc ttgtgtccag cttgggcagg attggacaag ttctgaccca      6900
     acaccgagta ctgttgcaaa acaaaaaggg ggaat                                 6935
//
ID   MRSAT1      repbase; DNA   ; MAM   ; 50 BP.
XX
AC   M24343;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Wallaroo (M.rufus) satellite repeat DNA.
XX
KW   SAT; Satellite; Simple Repeat; MRSAT1;
KW   Satellite repetitive element.
XX
OS   Macropus rufus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Diprotodontia; Macropodidae; Macropus.
XX
RN   [1]
RP   1-50
RA   Peacock J.W., Dennis S.E., Elizur A., Calaby H.J.;
RT   "Repeated DNA sequences and kangaroo phylogeny.";
RL   Aust. J. Biol. Sci 34, 325-340 (1981).
XX
DR   GenBank; M24343; Positions       1      50.
XX
SQ   Sequence 50 BP; 12 A; 22 C; 9 G; 7 T; 0 other;
     cgacctacct accgaccgac cgaccgacgg atctaccgac gtacctacct                   50
//
ID   CarLTR10_LTR repbase; DNA   ; MAM   ; 461 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from Canidae.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia.
XX
RN   [1]
RP   1-461
RA   Smit A.F.;
RT   "CarLTR10_LTR - ERV1 Endogenous Retrovirus from Canidae.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   ( 14 elements ) 4 bp dups; 10% subst level; multiple subs 3'
CC   half similar to that of LTR77. Close to family-590b.
XX
SQ   Sequence 461 BP; 132 A; 114 C; 103 G; 108 T; 4 other;
     tgagtnaggg acaggcgggg ctaggcaggg ctaggtaggg ggccacggaa tcaggctcac        60
     aaaaatccca aaaatgtgga gatgaaagga aaccagagat aaataaacca gaccatcctg       120
     tcccaggtgc cagaggtggg gtcttgttat aacagctact tgtgaccaac aaagaattac       180
     cggaccctaa aaaggaagta agccattgaa ggtgttatca ctagtcctta ctcaatggtg       240
     atatcaatag anatgttaaa aggatttagg ttccctggtt ggctttcaat aaaagaccaa       300
     ccctacaagc ccccagtggc aaccctgtcg ggacccctct cactcctgag agctttctct       360
     gtatccttgc ttaataaact tctatcgctt tactcactct cctttgtccg cgagattcat       420
     tcttcgactc cgtgagacaa gaaccnagct ctcccgcntc a                           461
//
ID   BCS         repbase; DNA   ; MAM   ; 299 BP.
XX
AC   X51356;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   5' truncated BCS repeat region.
XX
KW   BCS; BTBCS; Repetitive element; transfer RNA; transfer RNA-Ser.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-299
RA   Chee M.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (05-JAN-1990). Chee M.,
RL   MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2.
XX
RN   [2]
RP   1-299
RA   Chee S.M., Rizos H., Henderson R.B., Baker R., Stewart S.T.;
RT   "Subfamilies of serine tRNA genes in the bovine genome.";
RL   Mol. Gen. Genet 231(1), 106-112 (1991).
XX
DR   GenBank; X51356; Positions       7     305.
XX
SQ   Sequence 299 BP; 70 A; 92 C; 68 G; 69 T; 0 other;
     ccatcagaag ctgacagcag gaagctggtc tctcagaatg tcttctactt gctgctgctg        60
     ttaagtcgct tcagtcgtgt ccgactctgt gcgaccccat aaacggcagc ccaccaggct       120
     tccccatccc tgggattctc caggcaagaa cactggagtg ggttgccatt tccttcacca       180
     atgcatgaaa gtgaaaagtg aaagtgaact cgctcagatc agatcagatc agtcgctcag       240
     tcgcgtccga ctctttgcga ccccatgaat cgcagcacgc caggccttcc tatccatca        299
//
ID   CarLTR1A1C_LTR repbase; DNA   ; MAM   ; 414 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-414
RA   Smit A.F.;
RT   "CarLTR1A1C_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   (4 or 5 bp dups) 12-13% subst;.
XX
SQ   Sequence 414 BP; 124 A; 112 C; 66 G; 112 T; 0 other;
     tgatgtggag aacaaaggca aaaggaaatg tagataaaat taaatttcct tataacttgc        60
     agcccattga caaatacttg agacaggcag agtatgacat tcctccagga actcccaact       120
     gtcttaatgt taatgccttg ctagagggaa aaacaacctt agcttgacaa tagccaggcc       180
     tccaggatcc tgtaagtctt ctttaacata tgaaaatcct tttggaaact tcctttgtct       240
     ctaccccccc caactccaaa gtatataatc aattgctcct cacaatccca gggcagctct       300
     ttctgcccac gggtcctgtc cccgtgcttt aataaaacca cctttttgca ccgaaaatgt       360
     ctcaagaatt ctttcttgac cgttcgctcc cggaccccac atcaaatcac atca             414
//
ID   L1MA10      repbase; DNA   ; MAM   ; 1069 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 2.01, Created)
DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MA10) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1MA10; L1MA10 subfamily; Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MB3
CC   ORF2 ends at bp 675; average divergence of copies from consensus:
CC   17%.
XX
SQ   Sequence 1069 BP; 409 A; 155 C; 205 G; 272 T; 28 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     attccactta tatgaggtat ctaaaatagt caaactcata gaagcagaga gtagaatggt       720
     ggttgccagg ggctgggggr agggggaaat ggggagttgc tgttcaatgg gtataaagtt       780
     tcagttatgc aagatgaata agttctagag atctgctgta caacattgtg cctatagtta       840
     ataatactgg attgtacact taaaawttgt taaaagrgta gatctcatgt taagtgttct       900
     tatcgcacaa caaaaaaatg gggaactttt ggrrgtgatg gatatgttca ttatcttgat       960
     tgtggtgatg gtwtcacggg tgtntacata tgtcaaaact catcaaattg tacacwttaa      1020
     atatatgcag tttttagtgt ataattatac ctcaacaaag ctgttttaa                  1069
//
ID   ERV25_MD_LTR repbase; DNA   ; MAM   ; 828 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV25_MD, an old endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV25_MD_I;
KW   LTR33_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-828
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-828
RA   Gentles A., Jurka J.;
RT   "ERV25_MD, HERVR (ERV1) class retroviral element from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 376-376 (2005).
XX
CC   [2] (Consensus)
XX
CC   This LTR sequence occurs frequently adjacent to the internal ERV1
CC   type sequence ERV25_MD_I, and is probably the LTR associated with
CC   this specific endogenous retrovirus. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 828 BP; 238 A; 194 C; 178 G; 216 T; 2 other;
     tgtaagagag gaaagtcaga ttcarcatgc aagaaaagca acccaagcgg gggaggagca        60
     agggaagaca gagaattctg ggaaagaaca gaagagctga gaagattcaa agcagttact       120
     tcacttctct ttgggaactt ctcaagggtg gttggtctaa gagaaatctc tgaagcagaa       180
     agaccttctg agcatttgac catctctctg tgaactcaaa ccccttggat ccagctgatg       240
     agaaaaggag tggataggac tttkattata aagccatcca tccaaagaag attttcctct       300
     ctatccccta aagtctgtcc ttgaactttg tactacaacc tgggtagata gaagtcaaga       360
     cagctctcac aactgaccta ggagggtcag gcaggcagcc tgacccttca ggatttgggg       420
     agggggtcag ttgttagcct tagggatctc ctacttccca ctttccactt ccttacccaa       480
     caatcctatt taccctatct tgtgtgtgtc cctttagaat aaatagttat tccttagatc       540
     aagtgcctgc ctcataatat ccagggagag agacctgaag cttggggagg agagctatac       600
     tttctcctca aggaagaaga atcagtttca gtccttgact ttacattcaa cccagtctct       660
     gaagagatat actctgtaat tctgaagaca actagtgctg gttttactaa ggaaagagag       720
     gggaggaaca atctatcccc cctctccacc ttcttgctcc attccatctc tctcactctc       780
     tagcctcaag taaacatagt gggtggctcc atttccccat ccattaca                    828
//
ID   CarERV2a_LTR repbase; DNA   ; MAM   ; 584 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-584
RA   Smit A.F.;
RT   "CarERV2a_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 bp TSD _10000 10-11% subst.
XX
SQ   Sequence 584 BP; 178 A; 170 C; 98 G; 136 T; 2 other;
     tgatgaggga gcagaaggcn agctgaggac aaagcacaag ctgacacccc gcaaacnacc        60
     cccaccccca ggtgggatat gtgtgacatt cctcaggcac tcctggctgc cctaaagcta       120
     agggaaagga aaaacaaatg gttaacttat agagatcaca gtcctgcaag acatgagtct       180
     ccctcagttt acaaaatgtc ttagtgattt acaagaaaaa aagcattctt atcaataacc       240
     taacttccag aaggaaactc ccaactatct taatgttaat gctttactag agggaaaaac       300
     aaccttaact tgacaatggc aaggcctcca gtatcttgta ggtcctcttt agcatacaaa       360
     agttcttttg aaaacctccc ttttccttac ctcccccaac tcccaagtat ataatcagcc       420
     acccctcaca accccggggc agcagctctt cctgcccacg ggtcctgtcc ccgtgcttta       480
     ataaaaccac cattttgcac caaagacgtc tcaagaattc tttcttggtc gtcggctccg       540
     gacctcaccc caccaaacct cacctatatt ccaaaactac atca                        584
//
ID   ERV20_MD_LTR repbase; DNA   ; MAM   ; 527 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV20_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV20_MD_I.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-527
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-527
RA   Gentles A., Jurka J.;
RT   "ERV20_MD, an ERV1 class endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 366-366 (2005).
XX
CC   [2] (Consensus)
XX
CC   The LTR corresponds to ERV20_MD_I. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 527 BP; 138 A; 148 C; 87 G; 154 T; 0 other;
     tgacatgggc actgtacccc agaaacccag gcaaactatt atcaggggaa ctcccttgtt        60
     ttttttcctg actctgagat taaaaacacc caatgacccc tctagggtcc tgagatgact       120
     atcttccttt gatcatcctc tagatggaca gaaagatgca ccttcaggcc acaccttgat       180
     cctatcagac atctgtttgt cccctaaaac taaggaatct ttatgtcccc aggcagaccc       240
     cagtatgatc accccacctc atgcctgagt gactaactgt tgtgaaaaaa gtataaaatc       300
     cccagaactg atgtcatctg ggggaacagc ctttcctttc atgctgtcct cccaaggaac       360
     tgctccccat cttgctgttc taccttgcta tcctcctggc cactctcaac attactttct       420
     aaattaataa atctcttttt gtttttaagc taagttttgg agtcattgca tgcttgcaaa       480
     aggtatcctt cctgaacccc aaaagggtat ccttcctgcc cataaca                     527
//
ID   MER90       repbase; DNA   ; MAM   ; 615 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   Long terminal repeat from endogenous retrovirus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR; MER90;
KW   retroelement.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-615
RA   Smit A.F.;
RT   "MER90..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Putative LTR of retrovirus-like element. 4 bp duplication site.
CC   In some elements the 40 bp tandem repeat from 29-109 occurs only
CC   once.
XX
SQ   Sequence 615 BP; 170 A; 181 C; 114 G; 147 T; 3 other;
     tgagaaagag aaaagcagcc cctgacatct gagagctggc ctggtaccnw cagctaggcc        60
     ttggtgttgc tgggagctgg cctggcactc acagctaggc cttggtgttc tcctgttgaa       120
     cataaacaat ttcacagaat atcaacatca gacaaggcca ctctgtgacc atgatggatc       180
     gagacaaaaa caagaccact ccgtaatcat gtctgaacac agacaaaaac atgaacattg       240
     tccaagccac aaaaatgacc aagcatcccc ctctcccggc taatatgagt gactgctgct       300
     tctttaccaa ttacagcttt agcctcgctc tagtcttccc tccttctaga taagatttat       360
     taagataccc aatcacagaa ttactcccgc ttcctgacag catccaatcc agagcaaagc       420
     ttcgcttcct taaaccctcc cccaaatcac ctaacacaag cccaaatcct ataataagtc       480
     ctttctaaca tcctcttact gagacgcccc gtggttcccc atggtgtgcg ttctccctcg       540
     ctgcarcgag caataaaccc aacttgttca accacaggtg tgttcctggt ggtctttggc       600
     tggagggcac tgaca                                                        615
//
ID   ERV11_MD_LTR repbase; DNA   ; MAM   ; 600 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV11_MD, class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV11_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-600
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-600
RA   Gentles A., Jurka J.;
RT   "ERV11_MD, a recently-active class 1 endogenous retrovirus from
RT   the opossum M. domestica.";
RL   Repbase Reports 5(11), 348-348 (2005).
XX
CC   [2] (Consensus)
XX
CC   The corresponding internal sequence is deposited as ERV11_MD_I.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
SQ   Sequence 600 BP; 149 A; 151 C; 121 G; 176 T; 3 other;
     tgtgaatttt aaaagtctcc atcttggtct agcacccaaa aattgtgcac acccacacta        60
     cacgggcatg tgctagtcaa tgacaaatca gaaataacta actgcccacc tgggctgtcc       120
     taagccaagc tagagccaac cattggattt tgtgagacac aggaagtgag gtagggaaca       180
     gcctctggaa ttcgctcact tcctgtgggg agagsgagac gcagtggtgt aggaggagtt       240
     ggtgttagga gcttggagag ggaggacgcc cgcagacagc tttccttcag attggtcacg       300
     tgagttaagg actgattctt tccacctggg cctttgggcc taaaactccc tctgccttgg       360
     tcagaggttg agtagcccct ttcccttttc tcttctctcc ttctctccct mtccttttcc       420
     ctactcccag tgtgattaaa cctccataaa cttcattctg acttgagtgt ttcattttta       480
     ggaatttcat aagtaaattc cttggcggcc attgtttaat attacataaa tcctgtagcc       540
     acattttaac cattacaata ttataacctc tcccatmacc cctaaatttc caccattaca       600
//
ID   ECE1LTR     repbase; DNA   ; MAM   ; 505 BP.
XX
AC   X51929;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   U3 repeat region.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ECE1LTR; FSECE1;
KW   Sndonuclease; glycoprotein; Long terminal repeat;
KW   retrotransposable element; reverse transcriptase;
KW   transmembrane protein.
XX
OS   Felis silvestris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Felidae; Felis.
XX
RN   [1]
RP   1-505
RA   Moehring R.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (21-FEB-1990). Moehring
RL   R., Dept of Genetics, Central Institute of Molecular Biology,
RL   Academy of Science GDR, 1115 Berlin-Buch, Robert Raessle str 10,
RL   G D R.
XX
RN   [2]
RP   1-505
RA   Moehring R., Drescher B., Riedel H., Bauer D., Rohde K., Beyer W.,
RA   Rosenthal S.;
RT   "The exogenous RD-114 and the related endogenous proviral element
RT   ECE1 of domestic cat differ in their env genes.";
RL   Arch. Virol (1990)In press.
XX
DR   GenBank; X51929; Positions    5228    5732.
XX
SQ   Sequence 505 BP; 130 A; 158 C; 100 G; 117 T; 0 other;
     tgagagaccc ctggcttagc ttaataaaac acccccaccc tatcttcggc tttgtaaacg        60
     cctcacttgc agagcttgta cttccactat taacaagcag gatatctgcg gttagacagt       120
     cgggaccccg ggagagctgt acaggttgct acataaataa ccgctttgct ctcgcttctg       180
     taaccttctt acgcgcccaa ccctagccgt tcgcaacccc gggctccaag ttgcatcagc       240
     caaaggaaac ttcatttccc aagcttcccc gggacgaaat tacccacaac cctaaccacc       300
     accgagcaga gagcctacca ccagcctgta tgcaaatgta actcaaaatg gtataaaaga       360
     cctgtaaccc cgtttatcgg ctctcccgct ttctaacact gggagccctg gtgcaccagt       420
     aaagactctc tgccgaagtc ggagtgccgt gtggttcttt gcgccaactc tcattccata       480
     aggcctagga gcataattcc taaca                                             505
//
ID   MLT1G       repbase; DNA   ; MAM   ; 512 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 3)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1g
DE   subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
KW   Long terminal repeat of retrovirus-like element; MLT1G;
KW   MaLR family.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
RN   [2]
RA   Smit A.F.;
RT   "MLT1G..";
RL   Direct Submission to Repbase Update (1995).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 512 BP; 124 A; 127 C; 121 G; 119 T; 21 other;
     tgtggcggat tttaaaaatg gccacaaatt ctttgacact cttcccatcg aggagtgggg        60
     tccgtntcct ctccccttga atctgggtgg gctctgtgac tgcttcgacc aatagaatrc       120
     ggtggaagtg atgctrtgtg acttctgags ccaggtyata aaarrcattg cagcttcctg       180
     cttgctggaa ckctcacact tggagtcctg agccaccacg taagaagttc arctrccccg       240
     aggccaccat gctgtgagga agcccaagct astccacana gagaaaccga gccatcttgr       300
     aagcggatcc tccagcccca gtyaagyctt cagatgactg cagcyccggc tggcgtcttg       360
     actgcgccga taccacgtgg gacagagawg aactrcccag ctaagcccag cccaaattgc       420
     tgacctatag tattgrgaac gaataaatgr ttattgtttt aagccactaa gttttggggt       480
     ggtttgttac gcagcartag ataactgaaa ca                                     512
//
ID   D_CH        repbase; DNA   ; MAM   ; 236 BP.
XX
AC   M57436;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Goat D repeat.
XX
KW   CHD; D repeat; D_CH.
XX
OS   Capra hircus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Caprinae; Capra.
XX
RN   [1]
RP   1-236
RA   Li Q., Zhou B., Powers A.P., Enver T., Stamatoyannopoulos G.;
RT   "Primary structure of the goat beta-globin locus control
RT   region.";
RL   Genomics 9, 488-499 (1991).
XX
RN   [2]
RA   Li Q., Zhou B., Powers A.P., Enver T., Stamatoyannopoulos G.;
RT   "Beta globin locus activation region: Conservation of
RT   organization, structure and function.";
RL   Proc. Natl. Acad. Sci. U.S.A 87, 8207-8211 (1990).
XX
DR   GenBank; M57436; Positions    7164    6929.
XX
SQ   Sequence 236 BP; 79 A; 59 C; 53 G; 45 T; 0 other;
     tacttccatg ccactgagca attaagcccg tgggccacaa ctgctgagcc taagcaccac        60
     agctgctgaa gtctgtgtac cctggagtcc atgctccaca gccagagaaa tcacagtgag       120
     aggcctaagc accacagctg gaaagtagcc ttgcttgccg ctactagaga aagtctacat       180
     gcatcagtga aggactagga cagccaaaat taaataaata aaataaaatg aagatg           236
//
ID   L1ME_ORF2   repbase; DNA   ; MAM   ; 3285 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 2)
XX
DE   Primate L1ME LINE1 repetitive element - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1ME subfamily;
KW   L1ME_ORF2; LINE1.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-328
RA   Smit A.F.;
RT   "L1ME_ORF2..";
RL   Direct Submission to Repbase Update (1997).
XX
RN   [2]
RP   329-1639
RA   Jurka J.;
RT   "L1ME_ORF2..";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   L1ME_ORF2 is a consensus of the ORF2 region of the ancient LINE1
CC   elements with L1ME subfamily 3' UTRs.
XX
SQ   Sequence 3285 BP; 1507 A; 533 C; 470 G; 717 T; 58 other;
     atggcagacn taaancctaa catatcaatr mttacattaa atgtaaatgg attaaacact        60
     ccaatcaaaa gatacagatt gtcagagtgg ataaaaaaac aacacccaac aatatacwgc       120
     ctatmagaga cacaccttaa atataaagac acasataggt tgaaartaaa agaatggaaa       180
     aagatatacc atgcaaatwg taaccaagag aaagccggag tggctatatt aatatcagac       240
     aaagtagact ttaaaccaag aaatattact agagataaag agggacattt cataatgata       300
     aaagggtcaa tctatcagaa agacataaca atcctaaata tatatgcacc caanatcaga       360
     gcaccaaaat acataaagca aatactaata gaactgaaaa gagaaataga caaatccaca       420
     ataatagttg gagacttcaa taccccactg tcagtaattg atagatcaac tagacagaaa       480
     atcaataagg atatagaaga cttgaacaac actatcaacc aactggacct aattgacata       540
     ttatagaaca ctccacccaa caacagcaga atacacattc ttytcaagtg cacatggaac       600
     attcaccaag atagaccata tgctrggcca taaaacaagt ctcaataaat ttaaaaaaat       660
     tgaaatyata caaagtatgt tctctgacca caatggaata aaawtagaaa tcaataacaa       720
     aaagatactc tggaaaatnc acaaatactt ggaaattaaa caacatactt ctaaataact       780
     catgggtcaa agaagaaatc aaaagagaaa ttaaaaaata ttttgaaata aatgaaaatg       840
     aaaayacaac atatcaaaaa tttatgggat gcagctaaag cagtgcttag agggaaattt       900
     atagcattaa atgcctatat taaaaaagaa gaaagatctc aaatcaataa cctaagtttc       960
     caccttaaga aactagaaaa agaagagcaa attaaaccca aagtaagcag aagaaaggaa      1020
     ataataaaga ttagagcaga aataaatgaa atagaaaaca gaaaaacaat agaaaaaatc      1080
     aataaaacca aaagttggtt ctttgaaaag ataaaattga caaaccttta gctagactaa      1140
     aaaaaagaga gaagacacaa attactaata natcagaaat gaaagaggag ayattactac      1200
     agatyctaca gaaataaaaa ggataataag agaatactat gaacaacttt atgccaataa      1260
     atttgataac ctagatgaaa tggacaaatt ccttgaaaca cacaaactac caaaactgac      1320
     tcaagaagaa atagaaaatc tgaatagacc tataactatt aaagaaattg aatcagtaat      1380
     taaaaacctt ccaacaaaga aaagtccagg accagatggc ttcactggtg aattctacca      1440
     aacatttaaa gaattaatac caatcctact caaactcttc caaaaaatag aagaggaggg      1500
     aatacttcct aactcattct atgaggccag cattaccctg ataccaaaac cagacaaaga      1560
     cattacaaga aaagaaaact acagaccaat atccctgatg aacatagatg caaaaatcct      1620
     caacaaaata ctagcaaanc aaatccaaca gcacatgaaa aggattatac accatgacca      1680
     agtgggattt atcccaggga tgcaaggctg gtttaacata yaaaaatcaa ycaatgtgat      1740
     wcactacaty aacagrntaa aggagaaaaa tcatatgatc atctcaatag atgcagaaaa      1800
     agcatttgac aaaattcaac atccattcat gataaaaact ctcaataaac taggaataga      1860
     aaggaacttc ctcaanataa taaaggnmat atatgacaaa cctacagcta acatcatact      1920
     taatggtgaa aaactgaaag cwtttcccct aagatcagga anaagacaag gatgtctact      1980
     ctcaccattt ctattcaaca ttgtactgga agtcctagcc agtgcaataa ggcaagagaa      2040
     agaaataaaa ggcatacaga ttggaaagga agaagtaaaa ctgtctttat tkgcagatga      2100
     catgattttn tatatagaaa atyctaaaga atccacaaaa aaacwactag aactaataaa      2160
     taaatttagc aagntcncag gatacaaggt caatatacaa aaatcaattg tatttctata      2220
     tactagcaac gaacaatntg aaaatgaaat taagaaaaca atwccattta caatagcatc      2280
     aaaaaaataa aatacttagg aataaattta acaaaataya trcaagactt gtacgctgaa      2340
     aactacaaaa cattgatgaa agaaattwaa gaagacctaa ataaatggag agatatacca      2400
     tgttcatgga ttggaagact caatattgtt aagatgkcaa tactccccaa attgatctat      2460
     agattcaata caatcccaat caaaatccca atggtttttt ttgtagaaat tgacaarctg      2520
     attctaaaat ttatatggaa atgcaaagga tccagaatag ccaaaacaat tttgagaaag      2580
     aagaacaaag ttggaggact cacattacct gatttcaaaa cttactayaa agctacagta      2640
     atcaagacag tgtggtattg gtataaggat agacatatag atcaatggaa cagaatagag      2700
     aacccagaaa tagacccaca catatatggt caaytaattt ttgacaaagg tgccaaggca      2760
     attcaatggg gaaagaatag tcttttcaac aaatggtgct ggaacaactg gatatccata      2820
     tgcaaaaaaa tgaasttmga cccctacctc acaccatata caaaaattaa ctcaaaatgg      2880
     atyatagacc taaatgtaaa anctaaaact ataaaactyt tagaagaaaa cataggagaa      2940
     aatcttcgtg accttgggyt aggcaawgat ttcttagata tgacacmaaa agcacaagca      3000
     acaaaaggaa aaattgataa attggacttc atcaaaatta aaaacttctg ctcttcaaaa      3060
     gacacyatca agaaaatgaa aagacaagcc acagactggg agaaaatatt tgcaaawcat      3120
     atatctgaca aaggacttgt atccagaata tataaagaac tcttacaact caataataaa      3180
     aagacaaata acccaattaa aaaatgggca aaggayttga acagacattt cwccagagaa      3240
     gatatacaaa tggccaataa gcacatgaaa agatgctcaa catca                      3285
//
ID   HERVL       repbase; DNA   ; MAM   ; 5654 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 3)
XX
DE   Internal part of endogenous retroviral element HERV-L; a
DE   consensus sequence.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; HERVL;
KW   Internal part of endogenous retrovirus HERV-L; MLT2.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-5654
RA   Cordonnier A., Casella F.J., Heidmann T.;
RT   "Isolation of novel human endogenous retrovirus-like elements
RT   with foamy virus-related pol sequence..";
RL   J. Virol 69(9), 5890-5897 (1995).
XX
RN   [2]
RP   1-5654
RA   Heidmann T.;
RT   "Direct submission..";
RL   Direct Submission to EMBL/GenBank/DDBJ (26-JUN-1995). T.
RL   Heidmann, Inst. Gustave Roussy CNRS URA 147, 39 Rue Camille
RL   Desmoulins, F- 94805 Villejuif, FRANCE.
XX
RN   [3]
RP   1-5654
RA   Kapitonov V.V., Jurka J.;
RT   "HERVL..";
RL   Direct Submission to Repbase Update (SEP-1998).
XX
CC   [3] (Consensus)
XX
CC   LTR's of HERV-L are listed in REPBASE as MLT2 sequences.
CC   HERV-L has a potential leucine tRNA primer-binding site [1].
CC   The HERV-L internal sequence shows some amino acid similarities
CC   to
CC   retroviral reverse transcriptase and integrase proteins. In
CC   addition,
CC   a region homologous to dUTPase proteins was found downstream from
CC   the integrase domain [1]. The amino acid sequence and
CC   phylogenetic
CC   analysis indicate [1] that the HERV-L pol gene is related to
CC   that of foamy retroviruses. HERV-L-related sequences are detected
CC   in
CC   several mammalian species. The consensus sequence has been
CC   derived [3] based on the eleven copies of HERV-L internal
CC   sequences
CC   flanked by MLT2A1 and MLT2A2 long terminal repeats. It represents
CC   the youngest subfamilies of HERV-L endogenous retroviruses that,
CC   presumably, were active in a common ancestor of apes and human
CC   (94% identity between individual copies and the consensus
CC   sequence) [3].
XX
SQ   Sequence 5654 BP; 1516 A; 1253 C; 1441 G; 1444 T; 0 other;
     gattttggta ccaggagtgg ttctagagga acagaatatt aaggatggag ttctttcgtt        60
     ggttttgggg tttctggagt tggctgctta atatgattag acccaaaaat gctaaggact       120
     ctacttctaa tagtatggag aacactgata gtccttggca tgaactgttt agagagttat       180
     gcaaaataaa tgcatttgac actcctgatt caccgctcat gagaggcaag gagtttagtg       240
     actctataca taataccttt gaccatatgt ggagaaccaa ggaacataat gaagctggtt       300
     ggttgctcct aagttcagtg gacaaagtga tgaaagaaaa tgatgaactc agggattctg       360
     tctcccggct tcagaagcag atactgagcc tcaaatctgc taagattgcc ctgagtgaga       420
     gtcttatctc ctgtagagaa agagctgaaa ttgtggaaaa acagacacaa gctcttatca       480
     tgcgagtggc tgacctgcaa tgaaaggtgc atgcacagcc tcgccaggtg tctactgtta       540
     aagtgagggc attgattgga aaagaatggg accctgcaac ttggaatggg gacgtgtggg       600
     aggaccctga tgaagctggg gacactgagt ttgtaaactc tgatgaacct tttttgccag       660
     aagaaacagc ttccccatcc ccagtagtgg caacatcccc tccccgaccc atgctgccat       720
     cagcctttcc acctttgtct gaggagataa accctgcgct gcctgaggca acagtgatgg       780
     cctcccctga ggcagttgcc aggcaagata atgttgattc tcctcaggag ccacccccaa       840
     cacccctgtt tgcttctaga cctataacta gactaaagtc ccggcgggcc cctagaggtg       900
     aggttgagag tgtgacccat gaggaggtgc gctacactcg aaaagaactg tttgagtttt       960
     ctaatttata taaacagaaa tctggagaac aggcatggga atggatatta agggtgtggg      1020
     ataatggtgg aaggaacata gagttggatc aggctgaatt tattgatttg ggcccactaa      1080
     gtagggactc tgcatttaat gttgcagctc agggagttaa aaaaggttct aatagtttat      1140
     ttgcttggtt agctgaaata tggattaaaa gatggcccac tgtgagcgag ctggaaatgc      1200
     ctgatctccc ttggtttaat gtagaggaag ggatccaaag gcttagggag attgggatgg      1260
     tggagtggat tagtcacttt agacctactc atcccagctg ggagggtcca gaagatatac      1320
     ccttgaccaa tgccttgcga aatagatttg tgagggcagc acctgcatct ttgaagagcc      1380
     ctgtaattgc tcttctctgt atgtcagatc taacggtggg aaccgcagtc actcaactac      1440
     aaaatttaaa tacaatggga ataattggat cccgaggtgg caggggccaa gtggcagcac      1500
     tcaaccgtca aaggcaaggt gggcatagct accgtaatgg acagcagagg caaagcggca      1560
     atcagaatag tctgactcgt gtagagctct ggcattggct aattaatcac ggtgttccta      1620
     gaagtgaaat tgataggaag cctactgcat tcctacttaa tttatacaag cagaaaactt      1680
     ctaggtcgaa tggacaaaag actaatttga attataaaaa cagagaatca tggcccctca      1740
     atcaatttcc agacttgagc cagtttacag acccagaacc ccttgaatga aggggaggcc      1800
     gggtcccctt gaggaaggac cccactacat tactgacaat ttatgcagtg aatctttctc      1860
     ccatccttcc ccaaggagac ctctggcctt ttaccagggt aactgtgcat tggggaaagg      1920
     gaaatgatca gacattttgg ggactactgg acactggctc tgagctgacg ttgattccag      1980
     gggacccaaa acgtcattgt ggtcctccag ttaaagtagg ggcttatgga ggtcaggtaa      2040
     ttaatggagt tttagctcag gtccgactta cagtgggtcc agtgggtccc cggactcatc      2100
     ctgtggtcat ttccccagtg ccagaatgca taattggcat agacatactt agcagctggc      2160
     agaaccccca cattggctcc ctgactggta gggtgagggc tattatggtg ggaaaggcca      2220
     aatggaagcc attagagctg cctctaccta gaaaaatagt aaatcaaaaa caatatcgca      2280
     tccctggagg gattgcagag attagtgcca ccatcaagga cttgaaagac gcaggggtgg      2340
     tgattcccac cacatccccg ttcaactctc ccatttggcc tgtgcagaag acagatggat      2400
     cttggagaat gacagtggat tatcgtaagc ttaaccaagt ggtgactcca attgcagctg      2460
     ctgtaccaga tgtggtttca ttgcttgagc aaattaacac atctcctggt acctggtatg      2520
     cagccattga cttggcaaat gcctttttct ccattcctgt ccataaggcc caccagaagc      2580
     aatttgcctt cagctggcaa ggccagcaat atacctttac tgtcctacct caggggtata      2640
     tcaactctcc ggctttgtgt cataatctta ttcggagaga ccttgatcgc ttttcgcttc      2700
     cgcaagatat cacactggtc cattacattg atgacattat gctgattgga tccagtgagc      2760
     aagaagtagc aaacacactg gacttattgg tgagacattt gcgtgccaga ggatgggaaa      2820
     taaatccgac taaaattcag ggaccttcta cctcagtaaa atttctaggg gtccagtggt      2880
     gtggggcctg tcgagatatt ccttctaagg tgaaggataa gttgctgcat ttggcccctc      2940
     ctacaaccaa gaaagaggca caacgcctag tgggcctatt tggattttgg aggcaacaca      3000
     ttcctcattt gggtgtgtta ctccggccca tttatcgagt gacccgaaag gctgccagtt      3060
     ttgagtgggg tccagaacag gagaaggctc tgcaacaggt ccaggctgct gtgcaagctg      3120
     ctctgccact tgggccatat gacccagcag atccaatggt gcttgaggtg tcagtggcag      3180
     atagggatgc tgtttggagc ctttggcagg cccccatagg tgaatcacag cggaggcctc      3240
     taggattttg gagcaaggcc ctgccatctt ctgcagataa ctactctcct tttgagagac      3300
     agctcttggc ctgttactgg gctttggtgg aaactgaacg tttgactatg ggtcatcaag      3360
     tcaccatgcg acctgaactg cctatcatga actgggtgct ttctgaccca tctagccata      3420
     aagtgggtca tgcacagcag cattccatca tcaaatggaa gtggtatata cgtgattggg      3480
     ctcgagcagg tcctgaaggc acaagtaagt tacatgagga agtggctcaa atgcccatgg      3540
     tctccactcc tgccaccctg ccttctctcc cccagcctgc accgatggcc tcatggggag      3600
     ttccctatga tcagttgaca gaggaagaga agactagggc ctggttcaca gatggttctg      3660
     cacgatatgc aggcaccacc cgaaagtgga cagctgcagc actacagccc ctttctagga      3720
     catccctgaa ggacagtggt gaagggaaat cttcccagtg ggcagaactt cgagcagtgc      3780
     acctggttgt gcactttgca tggaaggaga aatggccaga tgtgcgatta tatactgatt      3840
     catgggctgt agccaatggt ttggctggat ggtcagggac ttggaagaag catgattgga      3900
     aaattggtga caaagaaatt tggggaagag gtatgtggat ggacctctct gagtggtcaa      3960
     aaactgtgaa gatatttgta tcccatgtga gtgctcacca acgggtgacc tcagcggagg      4020
     aggattttaa taatcaagtg gataggatga cccattctgt ggacaccact cagcctcttt      4080
     ccccagccac ccctgtcatc gcccaatggg cccatgaaca aagtggccat ggtggcaggg      4140
     atggaggtta tgcatgggct cagcaacatg gacttccact caccaaggct gacctggcta      4200
     tggccactgc tgagtgccca atttgccagc agcagagacc aacactgagc cctcgatatg      4260
     gcaccattcc tcggggtgat cagccagcta cctggtggca ggttgattat attggacctc      4320
     ttccatcatg gaaagggcag aggtttgtcc tcactggaat agacacttac tccggatatg      4380
     ggtttgccta tcctgcacgc aatgcttctg ccaagactac catccgtgga ctcacggaat      4440
     gccttatcca ccgtcacggt attccacaca gcattgcctc tgaccaaggc actcacttta      4500
     cggctaaaga agtgtggcag tgggctcatg ctcatggaat tcactggtct taccatgttc      4560
     cccatcatcc tgaagcagct ggattgatag aacggtggaa tggccttttg aagtcacaat      4620
     tacaatgcca actaggtgac aatactttgc agggctgggg caaagttctc cagaaggccg      4680
     tgtatgctct gaatcagcgt ccaatatatg gtactgtttc tcccatagcc aggattcacg      4740
     ggtccaggaa tcaaggggtg gaagtggaag tggcaccact caccatcacc cctagtgatc      4800
     cactagcaaa atttttgctt cctgttcccg cgacattacg ttctgctggc ctagaggtct      4860
     tagttccaga gggaggaacg ctgccaccag gagacacaac aacgattcca ttaaactgga      4920
     agttaagatt gccacctgga cactttgggc tcctcctacc tttaagtcaa caggctaaga      4980
     agggagttac agtgttggct ggggtgattg acccagacta tcaagatgaa atcagtctac      5040
     tactccacaa cggaggtaag gaagagtacg catggaatac aggagatcca ttagggcgtc      5100
     tcttagtatt accatgccct gtgattaagg tcaatgggaa actacaacag cccaatccag      5160
     gcaggactac aaatgaccca gacccttcag gaatgaaggt ttgggtcact ccaccaggaa      5220
     aaaaaccacg acctgctgag gtgcttgctg aaggcaaagg gaatacagaa tgggtagtag      5280
     aagaaggtag tcatcaatac cagctacgac cacgtgacca gctgcagaaa cgaggactgt      5340
     aattgtcatg agtatttcct ccttcttttg ttaaaaacat gtttgtgcat gtatacactt      5400
     gtactaagaa aatatcttca ttttatttcc ttttcctttt atcatgtgac ataagattta      5460
     ttgacttcat atcagcattt aagtattgtt aactttatgt aatagtattt gggttgggga      5520
     ttggtgcgtt tccggttgta cgaaggatag ttgtattatg ttaggcgtaa ttatgacctt      5580
     attattgtct ttatttgaag attatgtatg atctcaggag atgtgtatgg gttcaagttg      5640
     acaaggggtg gact                                                        5654
//
ID   ERI-2       repbase; DNA   ; MAM   ; 220 BP.
XX
AC   AF195910; AF195911; AF195912; AF195913; AF195914; AF195915;
AC   AF195916;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Erinaceus dauricus SINE ERI-2 consensus sequence.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; ERI-2;
KW   SINE retrotransposon.
XX
OS   Mesechinus dauuricus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Erinaceidae; Erinaceinae;
OC   Mesechinus.
XX
RN   [1]
RA   Borodulina R.O., Kramerov A.D.;
RT   "Short interspersed elements (SINEs) from insectivores. Two
RT   classes of mammalian SINEs distinguished by A-rich tail
RT   structure.";
RL   Mamm. Genome 12(10), 779-786 (2001).
XX
RN   [2]
RA   Kohany O., Jurka J.;
RT   "ERI-2 consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   Average similarity to consensus 86%.
XX
SQ   Sequence 220 BP; 49 A; 53 C; 48 G; 57 T; 13 other;
     gggaccrggt ggtggyrcac ctggttgagc acacatgtta caatgcacaa ggaccygggt        60
     tcgagccccc agtccctacc tgcaggggga aagctttatg agtggtgaag cagtgttgca       120
     ggtgtctctc tgtctctcwc cctmtcwccc ccttccctct tgatttctgg ctgtctctat       180
     cyaataaata aataaatwtw ttaaaaaatw aaratrctga                             220
//
ID   ERV2_MD_LTR repbase; DNA   ; MAM   ; 968 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV2_MD, a young class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV2_MD_I;
KW   ERV2_MD_LTR; Long terminal repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-968
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-968
RA   Gentles A., Jurka J.;
RT   "ERV2_MD, a young class 1 endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 378-378 (2005).
XX
CC   [2] (Consensus)
XX
CC   LTR corresponding to ERV2_MD_I.This consensus was reconstructed
CC   from the June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 968 BP; 267 A; 179 C; 219 G; 303 T; 0 other;
     tgtaaacctc aaaattcctt agacttataa atgttggaaa tttcaccatt gggatatttc        60
     atacttggaa aatttcttac tgatagtcta ttggaatggg aactccattg gcatgggagg       120
     ttccttctct tcccttctta agattacttt aggacagaaa ccctttgctg aacaatggaa       180
     aggactttga cctatgctta agcatagaac aggaatttct ttgagtcttg attgatttta       240
     gaattgatac aatggagata cttggaataa atctccaccc tattcagtcc taataggatt       300
     gagtaagggc tgcagcctag atcaaaattt aattattcca atctctacca tactcaagtt       360
     aacaggattt agaaagggct gtaacaaagg agtaaagatt taatcatttg aaaaatatga       420
     ccttcaacag acatgtgcaa aagccagaaa cctctgggcg gtcctgggtt aagcgagagc       480
     ctccattgac agggaaattg atgaagagtg attggtagat gtgaggactg aggggaggca       540
     acttggatgg tgtccttaaa gataggaggg tctggagact cgggggagag ggttgagttt       600
     ttggtcggtg tggttcctgg gctctgagga agcttgctct gaaggaagct gaaggtgggg       660
     gcctctgaga ctgtttctcc attttggaca cgtgagtgat agggactgat ctcttttctt       720
     tgccccagct atctaagggc ttgggccttt tggcccagcc taaacagaag gggtatttaa       780
     gccctattcc cttctctccc ctttctctct ctatatatat ctctaattcc tttcttgctc       840
     ctattgtaat taaactccaa aaaaggctga cggctgactt gagtttttca tttaggaatt       900
     acatagctga ttccttggcg accttaaatt aatatatatc agtcttttaa agtgattccc       960
     ttgtaaca                                                                968
//
ID   SOR1        repbase; DNA   ; MAM   ; 177 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   SINE from shrews.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Sorex
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Soricidae; Soricinae.
XX
RN   [1]
RP   1-177
RA   Borodulina O.R., Kramerov D.A.;
RT   "Short interspersed elements (SINEs) from insectivores. Two
RT   classes of mammalian SINEs distinguished by A-rich tail
RT   structure.";
RL   Mamm Genome 12(10), 779-786 (2001).
XX
RN   [2]
RP   1-177
RA   Smit A.F.;
RT   "SOR1 - SINE from shrews.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 177 BP; 46 A; 49 C; 53 G; 27 T; 2 other;
     ggggctggag cgatagcaca gtgggtaggg cgtttgcctt gcacgcggcc gacccgggtt        60
     cgattcccag catcccatat ggtcccccga gcaccgccag gagtnattcc tgagtgcaga       120
     gccaggagta acccctgagc atcgccgggt gtgacccaaa aagnaaaaaa aaaaaaa          177
//
ID   L1C_OC      repbase; DNA   ; MAM   ; 4374 BP.
XX
AC   M18818; X07786; X07787; X07788;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   07-FEB-2000 (Rel. 5.01, Last updated, Version 3)
XX
DE   Direct repeat L10c-4.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; Beta-globin;
KW   L1C_OC; delta-globin; epsilon-globin; gamma-globin;
KW   globin gene cluster; hemoglobin alpha-2 beta-2; pseudogene.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RP   1-4374
RA   Margot B.J., Demers W.G., Hardison C.R.;
RT   "Complete nucleotide sequence of the rabbit beta-like globin gene
RT   cluster. Analysis of intergenic sequences and comparison with the
RT   human beta-like globin gene cluster.";
RL   J. Mol. Biol 205(1), 15-40 (1989).
XX
DR   GenBank; M18818; Positions   33724   38097.
XX
SQ   Sequence 4374 BP; 1697 A; 837 C; 838 G; 1002 T; 0 other;
     gggaaaatgg cagggcaaaa ttacacttat caatagtcac actgaacgtt aatggcctga        60
     actgtccagt taaaagacat agattggctg attgggttaa ggaacaaaac ccatctattt       120
     gctgcttaca gaaacacatc tttccaacaa agatgcatcc agactgaatg tgaaaggctg       180
     gagaaagata ttccatgcca acagaaatga aaaaagagca ggcataacca tcttaatatc       240
     agacaaaata aactttagca caaaaactgt taagagagac aaagaggggc actacataat       300
     gattaaggga tgaattcaac agaaaaaata taacgattat caatgtatat gcacctaatt       360
     acagggcacc ggtttattta aaagatttgt taagagagtt aaagggagac ttagactcca       420
     atacaatagt actgggggac ttcaatactc cactctcaga aatagacaga tcacaggaca       480
     gaagactaca ggaaacagta cattcaaagg atactatagc ccagatggat ctgacacata       540
     tctacagaac ttttcatcct gcacttaaag aatttacatt cttctcagca gtacatggaa       600
     cctactctaa gattaaccac atactaggcc ataaagcaag tctcagcaca ttcaaaagaa       660
     ttagaatcat atgatgcagc ttctcagacc ataatagaat gaagtcggaa attagcaact       720
     caggaatccc tacagcatat gcaaacacat ggagagtgaa caacatgctc ctgaatgaac       780
     actaggtcat caaagaaatc aaaagagaaa tcaaaaactt tctggaagta aatgaggata       840
     acagcacaac ataccaaaat gtatgagatg cagcgaaagc agtgttaaga gaaaagttta       900
     tatcaatagg tgcctacatc aagaaattgg aaaggcacca aatagatgag ctttcaaatc       960
     acctcaagga tctagaaaaa ctgcagcaaa gcagacccaa atctagtagg agaagagaaa      1020
     taattaaaat cagagaagaa atcaacagga ttgaatccaa aaaaattacc aaaaatcagc      1080
     caaatgggga gctggttttt tgaaaaaata aacaaaattg ataccgcatt agctcaacta      1140
     actaaaagaa gaagagacca aatcaataaa atcagagatg aaataggaaa tgtaacagca      1200
     gacaccacag aaatgaaaag aatcatcaga aattactaca aggactgtat gccagcaaac      1260
     agggaaatct atcagaaatg catagattcc tggacacctg caacctacct acattgaacc      1320
     aggaagacat cgaaagccta aacaaaccca taactgaggc agaaattgaa acagtaataa      1380
     aggccctccc aacaaagaaa agcccaggac cagatggatt cactactgaa ttctaccaga      1440
     aatttaaaga agaactaact caattcttct caaactattc agaacaattg aaaaagaggg      1500
     aatcctccca aaatctttct atgaatccag catcacctta attcctaagc cggaaaaaga      1560
     tgcagcattg aaagaaaatt acagaacaat atacctaatg aacatagact caaaaattct      1620
     caataaaatt ctggccaacg gagtgcaaca acatttcaga aagatcattc acccagacca      1680
     agtgggatat aaccctggta tgcagggatg gttcaagtgt ttgcaaatgt gatacaccac      1740
     attaacagac tgcagaagaa aaaccatatg attatctcaa tagatgcaga gaaagcattc      1800
     aataaaacac aagacccttt catggtgaaa actctaagta aactgggtat agaaggaatg      1860
     ttcctcaata caatcaaagc aatttatgaa aaacccacga ccagcatcct attgaatggg      1920
     aaaaagttgg aagcatttcc actgagatct ggtaccatac agggatatcc attctcacca      1980
     ctgctattca gtatatttct ggaggcttta gccagagctg ttaggcaaga aaaagaaatt      2040
     gaagggatac aagagcctac ttatatttga tcaggaatct aaaaccaatt cctggagcaa      2100
     ggacagtcta ttcaataaat ggtgctggga tttccacgtg ctgaagcatg aagaaagacc      2160
     cctaccttac accttacaca aaaatccact caacatggat taaagaccta aatctatgac      2220
     ccgacaccat gaagttatta gagaacattg gagaaaccct gcaagatatt ggcaccgcaa      2280
     agacttcttg gaaaagaccc tggaggcaca ggcagtcaaa gccaaaatta actattgaga      2340
     ttacatcaaa ttgagaagtt ctgtactgca aaagaagcag tcaggaagtg aagaggcaac      2400
     tgacagaatg ggaaaaaata tttgcaaact aagcaacaga taaagcatta atagctagaa      2460
     tccacaaaga cataaagaaa ctccacagca tcaaaacaaa caacccactt aagagatggg      2520
     ccaaggacct cacttgccat ttttgaaaag aggaaatcca aatggccaac atccacatga      2580
     agaaatgttc aagatcgcta gcaatcaggg aaatgcaaat caaaaccaca atgaggtttc      2640
     acctcacccc gcttagaatg gctcacatac agaaatctac caacaataga tgctggaaag      2700
     gatgtgggga gaaagggaca ctaacccact gttggtggga atgcaaactg gttaagcccc      2760
     tatggaagtc agtctggaga tcctcagaaa cctgaatata accctaccat acaacccagc      2820
     catcccgctc ctggaattta cccaaaggaa attaaattgg caaacaaaca agctgtctgc      2880
     acctcaatgt ttattgcggc tcacttcaca atagctaaga cctggaacca acccaaatgc      2940
     ccatcaacag tagactggag gaagaaatta tgggacatgt actctataga atactatata      3000
     gaagcaaaaa aaaacaatga aatccggtca tttgcaacaa aatggaggaa tctggaacac      3060
     atcatgctga gtgaaataag ccagtcccaa agggacaaat atcatatgtt ctccctgatc      3120
     agtgacaact gacccagcac caaaaaggaa acctgtcaaa gtgaaatgaa cactatgaga      3180
     aacagtgact tgaacagccc ttgtcctgac tgttgatgta caatgtaata ctttatccct      3240
     tttagtattt tttggttgtt ctacttaata ctattggttg aactctgtaa ttaacacaca      3300
     attattctta ggtgtttaaa tttaactgaa aagtaatccc tgttaaatat aagagtggga      3360
     ataagagagg gaagagatgt gcaattcggg acatgctcaa actgacttac ctcaaatggt      3420
     agagttagaa acagaccagg ggattcgaat tcaatcccat tgaggtggcc atgttccaat      3480
     gccatctcac tagtcccagt gatcaatttc tgttcacaat tgatcgtaat gataggcata      3540
     agagtcagag ggatcacata aacaagacta gtgtctgcta atactaactg acagaattaa      3600
     aaatggagag aacattccaa catgggaaat gggatacaca tcagactcat agaatggcac      3660
     atgtcctaaa cagcactctg gcctcagaat cagcccttaa ggcattcaca tctggctgaa      3720
     gagcccatga aagtatttca ggcaatggaa aggtaagatg ctctagaaaa aaaaaaaaaa      3780
     aaaggagtta aatgagctaa atgaaagatc tctgtgagcg agatcccagt tgaaagaatg      3840
     ggccattgag gaaggaggta ccgttctcta aagggaggag tggacttcca ctttcactat      3900
     gaccttgtct aaataagatc gaagtcagtg aactcaaaag gcctccatag ccttggtaac      3960
     tcatgacagg agcctgggga gataactgac cccctaaaca agaatgtcaa tttgttaagt      4020
     caacgacagg agtcgctgtg cacttactcc tcatgtagga tctctgtcct taatgtgttg      4080
     ttcaatgtga attaatgcta taactagtac tcaaacagta tttatacttt atgttctgtg      4140
     tgggtgcaaa ctgttaaaat ctttacttaa tatatactaa attgatcttc tgtatataaa      4200
     gataattgaa aatgaatctt gatgtgaatg gaatgggaga gggagcagga gatgggaggg      4260
     ttgcaggttg gcaaggcaag ttatgaggat gaagccattg taatctataa gctgtaattt      4320
     ggaaatttat atttattaaa taaacagtta aaaattaaat aaataaaata aaaa            4374
//
ID   SINEC1D_CF  repbase; DNA   ; MAM   ; 195 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Old dog SINE element SINEC1D_CF.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   SINEC1D_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-195
RA   Jurka J., Gentles A.;
RT   "Old dog SINE element SINEC1D_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   This dog SINE element has average similarity to consensus of
CC   79%. In addition, it appears to as closely related to Phoca
CC   vitulina (harbor seal) SINEC_PV, as to other dog SINE
CC   elements.
XX
SQ   Sequence 195 BP; 41 A; 58 C; 44 G; 52 T; 0 other;
     aggggcgcct gggtggctca gtcggttaag catctgcctt cagctcaggt catgatctca        60
     gggtcctggg atcgagccct gcatcgggct ccctgctcag tggggagtct gcttctccct       120
     ctccctctgc ctgcccctct gcctacttgt gctctctctc tcaaataaat aaataaaatc       180
     tttaaaaaaa aaaaa                                                        195
//
ID   MLT1G2      repbase; DNA   ; MAM   ; 590 BP.
XX
AC   .
XX
DT   06-MAY-1999 (Rel. 4.04, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 3)
XX
DE   Mammalian long terminal repeat, MLT1G2 subfamily - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
KW   Long terminal repeat of retrovirus-like element; MLT1G; MLT1G2;
KW   MaLR family.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-285
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
RN   [2]
RP   32-590
RA   Jurka J.;
RT   "MLT1G2..";
RL   Direct Submission to Repbase Update (1999)(April; extension June
RL   1999).
XX
RN   [3]
RP   1-590
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [3] (Consensus)
XX
CC   LTR of MLT1G2 retrovirus-like MaLR element. 5 bp target site
CC   dups.
CC   Average divergence from consensus 25%.
CC   The original MLT1G consensus was a combination of the MLT1G2 5'
CC   half
CC   and MLT1F 3' half.
XX
SQ   Sequence 590 BP; 132 A; 162 C; 155 G; 139 T; 2 other;
     tgtggcgatt tttaaaacat ggccgcaaat tctttgacac tcctctcatt gagangtggg        60
     gtctatgtcc cctccccttt gaatctgggc gggcttgtga ctgctttaac caatagagta       120
     cggcggaagt gacgctgtgt gacttctgag gctaggtcat aaaaggcgat gcagcttctg       180
     ccttgttcgc tggaacactt gctcttggag ccctgagccg ccatgtaaga agtctgacta       240
     ccctgaggcc gccatgctgt gaggaagccc aagccacatg gagaggccac gtgtaggcgc       300
     tctggtcgac agtcccagct gagcccagnc ttcaagtcat cccagcccag gcgccagaca       360
     tgtgagtgaa gaagcctcca gatgattcca gcccccagcc gtcgagtcac ccccagcctt       420
     cgagtcttcc cagctgaggc cccagacatc gtggagcaga gacaagccat ccctgctgtg       480
     ccctgtccga attcctgacc cacagaatcc gtgagcataa taaaatggtt gttgttttat       540
     gccactaagt tttggggtgg tttgttatgc agcaatagat aactggaaca                  590
//
ID   MER34B      repbase; DNA   ; MAM   ; 599 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR; LTR34B;
KW   MER34B; MER4I-group; retroelement.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Toth G., Jurka J.;
RT   "Repetitive DNA in and around translocation breakpoints of the
RT   Philadelphia chromosome..";
RL   Gene 140, 285-288 (1994).
XX
RN   [2]
RP   546-1
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
RN   [3]
RP   1-546
RA   Kapitonov V.V., Jurka J.;
RT   "MER34B..";
RL   Direct Submission to Repbase Update (JUN-1998).
XX
RN   [4]
RP   1-599
RA   Naik A., Jurka J.;
RT   "MER34B..";
RL   Direct Submission to Repbase Update (AUG-1998).
XX
CC   [4] (Consensus)
XX
CC   70% similar to MER34 approximately over the entire length.
XX
SQ   Sequence 599 BP; 174 A; 132 C; 104 G; 185 T; 4 other;
     tgtgggagac cagaatatgc caccccaaaa tatgcctctt tggcataagg aytgttgagc        60
     tgaaggcaat taagaagaag cagatgcagg aaagctctct gccctccctc tatttgccta       120
     aaagcaggac atagatttac aaagacaaaa ggtatcctgc ccccacccct tctaccaggg       180
     agaacaaagg ttaaccactg aagacaactt tagaccctta ttggcctgga gatggtacca       240
     gaggaatcta cattaacaag ccttactaac tagcctttat ctgccagtta tttgccttcc       300
     cacaagttgc tgcccctaga gactcaaagt ccttttcctt tgtcttgtca cttctctaaa       360
     aatttntttt actgttcttt gttgaagatg ctatataagc tggaattcaa agccacctct       420
     ttgagaacta ctcattctct gggtgtctcc catgtatata tgaaatatac atgttnaaaa       480
     ataaanttaa taaacttctg tctgtttttc tcttgttaat ctgtcttttg ttacaggggt       540
     ctattccaac taagaactta tgagggttga ggagaaaaaa ttatttttct tcccctaca        599
//
ID   ERV13_MD_LTR repbase; DNA   ; MAM   ; 870 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV13_MD, a class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV13_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-870
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-870
RA   Gentles A., Jurka J.;
RT   "ERV13_MD, an ERV1 retroelement from the opossum M. domestica.";
RL   Repbase Reports 5(11), 352-352 (2005).
XX
CC   [2] (Consensus)
XX
CC   LTR corresponding to ERV13_MD_I. This consensus was reconstructed
CC   from the June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 870 BP; 242 A; 134 C; 185 G; 309 T; 0 other;
     tgtaaggatg atattagaaa ataagtattg ttttattagt ttagagataa gaagtaaagt        60
     ggctggcttg agaaaagaac tggagtttga agcagagctg agagagcatg ttaatttcag       120
     atgtgacagt tataaccatt tttctgtgtc aattactctc tctggcagtt gggagttggt       180
     ctctggcagt tggcagagac acactcagag actctctctc agggctggag gaggtaacat       240
     ctttgcctct ctctctgtct gagggaaaga cctgaaggag ctcagtgttt tcctttccca       300
     acttgggaaa cactattgac tatctattgt ggttttatag attgtttaac tctgagaaga       360
     ccaaagaaaa acctggtctt tggtttggac tctgagtctg ttaaggctca gagtcctaac       420
     ttgattcttg ttgagactca accagctagc ctttgctatt ttataatttg aaggtgaagt       480
     taagatttat aaggataata gtggtagttt ttatttagat agtataaatt tgggttagtc       540
     agatcaggga ggattagtgt agcctgtgaa acacaggaga agcggttcct tgtggaccca       600
     ggagtttatt tgggtggatt tagaatccct tagaattaga aatcctttat ttatccttat       660
     atatttcaat aaatatttta tttttataat aagagtctct ttagcatcct tgcacctggc       720
     cctgaaggga agttcacatt tgagcttcac ttcatcactg aggatacttt tgattacatc       780
     tatcaaaagt atccaaacag ttttgaacct atatttgaac agtttttcta tctattttgt       840
     gtaactcgcc attatttttt tttttttaca                                        870
//
ID   HAT2_MD     repbase; DNA   ; MAM   ; 3298 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   HAT2_MD - an autonomous hAT transposon from Monodelphis
DE   domestica; consensus sequence.
XX
KW   hAT; DNA transposon; Interspersed Repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-3298
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-3298
RA   Gentles A., Jurka J.;
RT   "HAT2_MD, an autonomous hAT DNA transposon from M. domestica.";
RL   Repbase Reports 5(10), 307-307 (2005).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus of copies is around 93%
CC   similarity. Like HAT1_MD, the sequence lacks the canonical CA-TG
CC   termini and 8 bp TSDs of hAT transposons, and may be incomplete.
CC   However, it has ~23 bp imperfect TIRs. The consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1280..1573,1577..3085)
FT                 /product="HAT2_MD_1p"
FT                 /translation="MTSRKRKIDSECRIFKEQWTYDYFFMQYKERAVCLIC
FT                 QNIVSVFKEYNLRRHYQTQHKDKYDCLVGDVRKDKILKLKNTLTTQQNTFV
FT                 KQKQLNISSLASFQVAKLIACTGRPFVEGEFVKECLLSVAKEMCPEKADLF
FT                 STVSLSGSTITXRIEEMGDNLHQHLQNSTRKLSYFSLALNESNDVRDSAQL
FT                 LIFIRGXNDNFEVTEELAALQSIKGTTTGEDIYEKVSQTVKDLELDWAKLA
FT                 SVTTDGAPSMVGSKKGVIAHINQEMDKRNHSHPIAIHCLIHQQALLCSKSL
FT                 KWDSVMKIVVSCVNFIRANALNHRQFQEFLSELNVAYEDVLYHTEVHWLSR
FT                 GRVLRHFYDLLPQITAFMLSKNKEVPELNDAEWKWHLTFLTDVTELLNSFN
FT                 VQLQGKGKLICDMQSHVKAFEVKLGLLIKQVKEENFCHLPLTQNLLAEKPL
FT                 IAFPKETCVDSLEKLQKEFQFRFKELHLHEQDIQLFRNPFSIDIENVDTIY
FT                 QMELAELQNCDSLKDAFKSSSLPNFYASLPSETYPNLRNHALKMATIFGST
FT                 YVCEQTFSRMKHLKSPTRSRLTDAHLHHLLWLAVTNMELDIDHLISQKQAH
FT                 SSH"
XX
SQ   Sequence 3298 BP; 954 A; 651 C; 769 G; 910 T; 14 other;
     tttagagcag gggtccccaa actatggcct gtgggccaca tgtggccccc tgaggccatt        60
     tatctggccc ccaccrcact tccagaaggg gcacctcttt cattggtggt cagtgagagg       120
     agtactgtat gtggcggcac cacaaagcgc ggcatcgctc acgtacagta ctacttccrg       180
     tgacataatc ctttgcgtgg cgccttgttc tgagagtaac tgaatgagaa ygaggygcca       240
     cacaaaggat tatgtggctg cacaatggaa gacgtcagca tggtgagygg cgatctgggg       300
     gaggggattc cgcactgtgt atactgctgc ccggtatagt ggtggcagtg atgggcctgt       360
     gcaaggtgtg acaggcccat cacagccagc gctgcagcct ccgctatccc agacagcagt       420
     atacagtgtc acaggcccag caccgcctcc agtactgtat acaggcatcg gatagcggtg       480
     atctggcctg tgacatcagc ggtgggcctc tactgtgaga agcccaccac tgccactggg       540
     tgttttataa gacaccccct gttttggggg ggtcaaatta atataagaca gtgtcttatt       600
     ttgggggaaa catggtagta caatggcccc catactcccc cagatgcaca acatattggg       660
     gagtatgggg gccattgtac tgtgtagtaa tgtggggaga gacttttggg caaagggagg       720
     ttataggggc cattatgttg tgcatctggg ggagtatggt tgccattgta ctatgtgggg       780
     gaagtgaggc atgtgttttt crtattaygg tctataatta cagatccata aatacggacc       840
     acaagaggac acacactagt gtygtgcctt cttttttcct gcygtggaat ctgatcgcat       900
     gggtcttacc catgcgatca gattcctgtg tgagttcaca gatcrcagtg tggttcgcac       960
     agggtagtgt gaactggaaa ggtggtggag gaactggctc tgtaatcgtg ccggttcctg      1020
     caccgcacca gtgtgagcct gaggtaaaag tggagttcca ccaatatggc cactggtgag      1080
     gctgaaatga tgtggactgg gaaggctgca ttgatggaca cagatcagac tgcattgatg      1140
     ggcagtgcag tctgtatgcc tctgtgtggg caaaattatt gttggtatat tgtttttgta      1200
     gggctgtata tatatatata taataatata tatatatata tgtattttac taatagcaat      1260
     ttggaatccc taggaaacaa tgacgtcaag aaagagaaaa attgactcgg agtgtaggat      1320
     attcaaagaa cagtggactt atgattactt tttcatgcag tacaaggaaa gagctgtgtg      1380
     tttgatatgc cagaatatag tgtctgtgtt caaagaatac aatttgcgtc gacactatca      1440
     aactcaacat aaagataaat atgattgttt ggtcggagat gtgagaaaag ataaaatatt      1500
     aaaactgaaa aatacattga caactcagca aaatactttt gtgaagcaga agcagctaaa      1560
     tatttcatca ctgtgagcaa gttttcaagt tgccaagcta atagcgtgca ctggcagacc      1620
     atttgtggag ggagaatttg ttaaagagtg ccttctttct gttgccaaag agatgtgtcc      1680
     agaaaaggca gacttattta gtacagttag tctttcagga tctacaatta caygaaggat      1740
     tgaagaaatg ggagacaatt tgcatcagca tttgcaaaac tccacaagaa aactttccta      1800
     tttttccttg gcactcaacg agagcaatga tgttcgtgat tctgcacaac ttctaatttt      1860
     tattcgtggg ayaaatgaca atttcgaagt cacagaagag cttgctgcac tgcaaagcat      1920
     caaaggaaca actacaggag aggatatcta tgaaaaggtt tcccaaactg tgaaggattt      1980
     ggagctggac tgggctaaac tagccagtgt gacaactgat ggtgctccta gcatggtggg      2040
     gtctaagaaa ggagtaattg ctcacattaa ccaagagatg gacaaacgta accattctca      2100
     tccaatagcc atacactgcc tcatccacca acaagcactg ctatgtagta aatcactgaa      2160
     gtgggactct gttatgaaaa ttgtggtatc ttgtgttaac ttcattagag ctaatgcact      2220
     aaaccacaga caatttcagg aatttctgtc tgagctaaat gttgcctatg aagatgttct      2280
     gtaccacaca gaagtccatt ggctgagtcg agggagagtt ttgagacatt tctatgactt      2340
     acttccacag attacagctt ttatgctttc aaaaaacaaa gaagtaccag agctcaatga      2400
     tgcagaatgg aaatggcacc tcacctttct gacagatgta acagagctac tcaacagttt      2460
     caatgtgcaa cttcaaggaa aagggaagct catctgtgat atgcaatcac atgtgaaagc      2520
     atttgaagta aaattaggcc tccttatcaa acaagtgaag gaggaaaatt tctgccatct      2580
     ccccttaact caaaatctgt tagcggaaaa acccttgatt gcattcccaa aagaaacatg      2640
     tgtggattca ctggaaaagt tgcaaaagga gttccaattc agatttaaag agcttcatct      2700
     ccatgaacag gacatacagc ttttccgtaa cccattttct attgacattg aaaatgtgga      2760
     tacaatttac caaatggaac tggctgaact gcagaattgt gactctctga aagacgcatt      2820
     caagtcaagc agcttgccta atttctatgc atctctcccc tctgagacat atcctaatct      2880
     caggaaccat gcactcaaaa tggcaaccat ctttggcagc acttatgtct gtgaacagac      2940
     tttttccaga atgaaacatc tgaaatctcc aaccagatct agactaactg atgcacactt      3000
     gcatcacttg ttatggctag cagtgacaaa tatggaactg gacattgacc atctcattag      3060
     ccaaaagcag gcccatagtt cccattgaaa tactggtcag tttgttgatt taaatttact      3120
     tgttctttat tttaaatatt gtatttgttc cttttttttt tttttacttt aaaataagat      3180
     atgtgcagtg tgcataggga tttgttcata gttttttttt tatagtccgg ccctccaayg      3240
     gtctgaggga cagtgaactg gccccctgtg taaaaagttt ggggacccct gctytaga        3298
//
ID   BTALUL1     repbase; DNA   ; MAM   ; 311 BP.
XX
AC   X00376;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Cow Alu-like repetitive sequence.
XX
KW   SINE1; SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   Alu-like repetitive sequence; BTALUL1; Repetitive sequence.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RA   Schimenti C.J., Duncan H.C.;
RT   "Ruminant globin gene structures suggest an evolutionary role for
RT   Alu-type repeats.";
RL   Nucleic Acids Res 12(3), 1641-1655 (1984).
XX
DR   GenBank; X00376; Positions    1258    1568.
XX
SQ   Sequence 311 BP; 76 A; 73 C; 84 G; 78 T; 0 other;
     atttccctca tagctcagtt ggttaagcat ctgcctgcaa tgcaagagat cccagttcga        60
     ttcctgggtc gggaaggatg gctggagaag ggataggcac ccactccagt attcttgggt       120
     ttcccttgtg gctcagctgg taaagaatct gcctgcaatg tgggagaccc agcttctatc       180
     cctgagtttg gaagatcccc tggagaaggg aaaggctacc cactccagta ttctggcctg       240
     gagaaatcta tggactgtag agtcatgggg ttgcaaagaa tcagacacga ttgagagact       300
     ctcacttcac t                                                            311
//
ID   CHRL        repbase; DNA   ; MAM   ; 168 BP.
XX
AC   .
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Cetartiodactyl CHR-like SINE type sequence - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; CHR-1; CHR-2;
KW   CHRL; non-LTR retrotransposon.; tRNA.
XX
OS   Cetartiodactyla
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RA   Nikaido M., Matsuno F., Abe H., Shimamura M., Hamilton H.,
RA   Matsubayashi H., Okada N.;
RT   "Evolution of CHR-2 SINEs in cetartiodactyl genomes: possible
RT   evidence for the monophyletic origin of toothed whales.";
RL   Mamm. Genome 12(12), 909-915 (2001).
XX
RN   [2]
RA   Shimamura M., Abe H., Nikaido M., Ohshima K., Okada N.;
RT   "Genealogy of families of SINEs in cetaceans and artiodactyls:
RT   the presence of a huge superfamily of tRNA(Glu)-derived families
RT   of SINEs.";
RL   Mol. Biol. Evol 16(8), 1046-1060 (1999).
XX
RN   [3]
RA   Nomura O., Lin H.Z., Wada Y., Yasue H.;
RT   "A SINE species from hippopotamus and its distribution among
RT   animal species.";
RL   Mamm. Genome 9(7), 550-555 (1998).
XX
RN   [4]
RA   Shimamura M., Yasue H., Ohshima K., Abe H., Kato H., Kishiro T.,
RA   Goto M., Munechika I., Okada N.;
RT   "Molecular evidence from retroposons that whales form a clade
RT   within even-toed ungulates.";
RL   Nature 388(6643), 666-670 (1997).
XX
RN   [5]
RA   Kohany O., Jurka J.;
RT   "CHRL consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [5] (Consensus)
XX
CC   Average similarity to consensus 84%.
XX
SQ   Sequence 168 BP; 47 A; 51 C; 39 G; 30 T; 1 other;
     ggacttccct ggtggtccag tggctaagac tccacgctcc caatgcaggg ggcccaggtt        60
     cgatccctgg tcagggaact agatcccaca tgctacaact aagagttcgc atgccacaac       120
     taaagatccc atgtgcygca actaagaccc ggcacagcca aataaata                    168
//
ID   MARINER1_MD repbase; DNA   ; MAM   ; 2997 BP.
XX
AC   .
XX
DT   21-OCT-2005 (Rel. 10.1, Created)
DT   21-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   MARINER1_MD - a putative Mariner transposon from Monodelphis
DE   domestica.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; DNA binding domain;
KW   DDE transposase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-2997
RG   The Broad Institute of MIT and Harvard, Cambridge, MA,
RG   USA.Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-2997
RA   Gentles A., Jurka J.;
RT   "MARINER1_MD, a Mariner DNA transposon from M. domestica.";
RL   Repbase Reports 5(10), 320-320 (2005).
XX
CC   [2] (Consensus)
XX
CC   The putative protein coding part of this element occurs as an
CC   uninterrupted ORF in the Monodelphis genome assembly. That
CC   specific sequence has imperfect terminal inverted repeats. The
CC   termini reported here are the consensus reconstructed from
CC   numerous copies; and have canonical CA-TG ends. The element is
CC   flanked by TA target site duplications. This entry was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           416..2686
FT                 /product="MARINER1_MD_1p"
FT                 /translation="MDKRKKTSDGNTASVKKKRLVITLEQKCDVIERHERG
FT                 HSNSKIGRDVGMPESTVRNIIKHAGEIKEKGKVASTFCGLQTTTRNRSVTM
FT                 IEMERLLAVWIDDCNKKCIPLSRAAIQTKASSLFKAVKENGNEVDSEETFS
FT                 ASGGWFDRFKNRVHLHHVKITGEIANADENMAANYPDVLKKIIGEGGYTDQ
FT                 PIFNVGGTGLFWKKIPFRTYIFKKEKTQPGFKVSNNHLTIFEQHECGHSNS
FT                 KTGQAVGMPEPMVQNIIKHTDEIKEKDSVPAFCGLQTTTRNRSVTMIEMER
FT                 PLAVWIEDCNNKHIPQNKAAMQTNAPTLFKVEKENEVDSEETFTANGSCFD
FT                 PFKNQTQLHNVKITEKTTTTDEDMAAKYPDVLKKIIEEGGYTDQQIFNVDE
FT                 TGLFWKRMPSRTHISKKENIKPGFKVSRDRLTLLLGGNAEGDFKLKPMLVY
FT                 WTQNPRALRGYNLQSLPVLWRSNKKAWVTKAVFEDWFSSYFSPAVEKYCKD
FT                 SNIAFKVLLILDNAPGHPTTLSSLCENIKVIFLPPNATSLLQPMDQGTIAT
FT                 FKAYYLRKIFEQAVVKTIGDDAMSLTDFWENYNIRDAVENIHHAWQQITAN
FT                 NMREVWKCILPHCANSNFEGFPSMKQAVVEEITNIGRKLGFDDLESDNVLE
FT                 LLDSHSEGLTTDDFLHLDQQRAFEDIDNDTEEADNKQMKEFTLKEFEDIFQ
FT                 ALEVVKQKIMDADPNVDRRIQIHQDVDKALCTYQRMYEDLKKEKTIESTLL
FT                 KYFKQE"
XX
SQ   Sequence 2997 BP; 1089 A; 435 C; 562 G; 910 T; 1 other;
     cagctaggtc atgattaatg taagtttgaa taatgtaaaa ttcaatttag tgtaaattat        60
     aaaatgatac caggtcacat ttaatgtgag ccaaaattca attaatgtaa trtatgtgag       120
     ctagttgagg gttttaacat gctactatat catcagtctg tacttgccta agttattata       180
     actaggtcat gattattgca aattcagata gttagaaatt caggatttta taaaatgaga       240
     gagatcacat ttaatgtgag ccaaaaatca gttaatgcaa tgtatgctag taaaaagttt       300
     taacttgcag atatgtcatt ctgctcttgc ataggtagta tgttgatata atttgttgct       360
     gggtaccata ttaccaacag ttgtgttaat ttttttttta aaagcccata acaaaatgga       420
     taaaagaaag aagacttcag atggaaacac tgccagtgtg aaaaaaaaga ggcttgttat       480
     tacattagaa caaaaatgtg atgtaattga gcgccatgaa cgtggtcata gtaactcaaa       540
     aataggacga gatgtaggaa tgcctgaatc tacagtacgg aatattataa aacatgcagg       600
     tgaaataaaa gaaaaaggta aagttgcatc cactttttgt ggtttgcaaa caactacaag       660
     gaatagaagt gttacaatga tagaaatgga acgtctttta gctgtgtgga ttgatgattg       720
     taataaaaaa tgcattcctc ttagccgagc agccattcag acaaaagcct caagtttatt       780
     taaagcagta aaagaaaatg gaaatgaagt agatagtgag gaaacttttt ctgccagcgg       840
     tggttggttt gaccgcttta aaaatcgagt tcatttgcat catgttaaaa ttactggaga       900
     gatagccaat gcagatgaga acatggcagc caactatcct gatgttttga agaaaataat       960
     tggagaaggt ggatacaccg atcaaccaat ttttaatgtg ggtggaacag gtttattctg      1020
     gaaaaagatt cctttcagaa cttacatttt taaaaaagaa aaaactcaac ctggatttaa      1080
     agtgtctaac aatcacctga caatttttga acagcatgaa tgtggtcata gtaactctaa      1140
     aacaggacaa gctgtaggaa tgcctgaacc tatggtacag aatattataa agcacacaga      1200
     cgaaataaaa gaaaaagaca gcgtgccagc tttttgtggt ttacaaacaa ctacaaggaa      1260
     tagaagcgtt acaatgatag aaatggagcg tcctttagct gtatggattg aagattgtaa      1320
     taataaacac attcctcaaa acaaagcagc catgcaaaca aatgctccaa ctttatttaa      1380
     agtagagaaa gaaaatgaag tagatagtga agaaactttt actgcaaatg gtagttgctt      1440
     tgatcctttt aaaaatcaaa ctcagttgca taatgtaaaa attactgaaa aaacaactac      1500
     tacagatgag gatatggcag ctaaatatcc tgatgttttg aagaaaataa ttgaagaagg      1560
     tggatacact gatcaacaaa tttttaatgt agatgaaacg ggcttattct ggaaaaggat      1620
     gccttccaga actcatattt ctaagaaaga aaacataaaa cctggattta aggtgtctag      1680
     ggatcgccta acacttttat tggggggtaa tgcagaaggg gattttaaat taaaaccaat      1740
     gcttgtttat tggactcaaa atcctcgagc tttgagaggc tataatctac aatcccttcc      1800
     agttctttgg aggtcgaata agaaagcatg ggtgactaaa gctgttttcg aagactggtt      1860
     ttcaagttat tttagccctg ctgttgagaa atattgcaag gacagtaata ttgcatttaa      1920
     ggtgttactg attttagaca atgctccagg tcatccaact acacttagtt cattgtgtga      1980
     gaatataaaa gtaatttttt tgccaccaaa cgcaacatct ctattgcaac ccatggacca      2040
     aggaaccatt gcaacattta aagcctacta cctaagaaag atttttgaac aggcagttgt      2100
     gaaaacaata ggtgatgatg caatgtcctt aactgacttc tgggaaaatt ataacatcag      2160
     agatgcagtt gaaaatattc atcatgcttg gcaacaaata actgcaaaca acatgcgtga      2220
     agtgtggaag tgcattttgc cacattgtgc aaatagtaat tttgaaggtt ttccctctat      2280
     gaagcaggct gttgtagaag aaataacaaa cataggaaga aagcttggtt ttgatgattt      2340
     agaaagtgac aatgttctgg aattgctgga ttcacactca gaaggattga ctactgatga      2400
     ttttcttcat ttagatcaac aacgagcatt tgaagatatt gacaatgata ctgaagaagc      2460
     agataataaa caaatgaaag aattcactct caaagaattt gaagatatct ttcaagcttt      2520
     agaagttgtg aagcaaaaaa ttatggatgc tgaccctaat gtcgatcgaa gaattcaaat      2580
     tcaccaagat gtggataaag ctctctgcac ttatcagcgt atgtatgaag atttaaaaaa      2640
     agagaagaca attgagtcta cactgctaaa atattttaaa caagaataac aatgtttttg      2700
     tcatatcggt ataggtttat ctttaggtaa gatattcagt aatttaattt tttttatttt      2760
     ttaaattttg ctttctatag ctataccatt actttgtaat aaacttgaat caaaagtaca      2820
     ttttttatct tttgttattc tgttaataaa cttattttaa aatattttca ttgcatattt      2880
     ccattgggct ggaaccaatg accatatttt acataattat aacttcaaat agtgcaaatt      2940
     caaatacatg tgaccacttc agaggattca ttattcacac taatcaggac ctagctg         2997
//
ID   L1MB6_5     repbase; DNA   ; MAM   ; 1711 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 2)
XX
DE   L1MB6_5 LINE1 repetitive element - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 repeat;
KW   L1MB6_5; MER60.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   477-1170
RA   Kapitonov V.V., Jurka J.;
RT   "L1MB6_5..";
RL   Direct Submission to Repbase Update (1997).
XX
RN   [2]
RP   1-1711
RA   Smit A.F.;
RT   "L1MB6_5..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [2] (Consensus)
XX
CC   5' end of LINE elements with L1MB5-8 subfamily 3' ends,
CC   comprising the
CC   5' UTR and part of ORF1 (from pos. 1043) [2].
XX
SQ   Sequence 1711 BP; 644 A; 328 C; 351 G; 352 T; 36 other;
     ggtaatgtca gcgaaaatgg cggagtaagg amctccgaaa attcactcct ccataaaagc        60
     aatgaaaaca ctggcaaaaa ttgtcagaat caactttttc agaactctgg aaattaacca       120
     aaggcttaca gcaatctagg aagtgtttat tcaagaaaaa yagctgaatc tcwgtaagaa       180
     cagcgagctt tgtggtattt taacttgccc tantcccatc ccccwctctc cagctcagca       240
     gtagccttga aaataacagc ttatattatg gtgaaaacca gcagccaccg gagkgggcag       300
     aacgggtttg gagcttctca aaagycncat tcccagggaa ttgtcattat ttgacctgtc       360
     tggcggctcc ctggaagact ccattcamag ggcttgtctt tatttgacct gactcagagc       420
     tcactcagtg cgaamagcat tatacctggg ggcatttgtt gaaaacawtt agaggcaawt       480
     gtttaacacc acagctgcct gaggcagtgr ataacagttg gggcaaacaa gaggctgacc       540
     aaaaagctta aaaggaaaag ctggggaatg agatgtccgn aggggctttg aaaagctcca       600
     acatattcct gggaatctag aaggccacgc gcatgcccag ggctgtacac atgctcagaa       660
     aagacctaag aaggccctaa gctctcacct ctggctgacc ttgagactct gcacaagcag       720
     gaagtgaaga ctaaggcaga gttgtaaact gcctggctga gtgttgaagg tatgccccaa       780
     cacacacaca gaaccccttg gcaaagamtg ggagacttgt tggttcmagg catttaagga       840
     aatctctgtc caatcattag ctgaccacta agctaacnga gcagagactt cagtggccac       900
     acatgacaaa gaatacagac tttacaaaat tagttcagaa aagtcactaa acaaacagca       960
     acaanaacac aaaagagyaa caacaaaccc tggaaaggag ggagaatctg atttccagag      1020
     ttgccacatt atattattta aaatgtccag ttttcaacaa aaaattacga ggcatacaaa      1080
     gaaacaagaa agtatggccc atacacagga aaaaaagcag ttaatagaaa ctatccctga      1140
     ggaagcccag acgttggact tactagacaa agactttaaa tcagctattw taaatatgtt      1200
     caaagaacta aaggaaacca tgtntaaaga antaaagaaa aatatragaa cgatgtctca      1260
     ccaaatagag aatatcaata aagagacaaa aattataaaa aataaancaa atagaaattc      1320
     tggagttgaa aagtacaata actgaaataa aaagttcact agaggggtac aacagcagat      1380
     ttgagcwggc agaagaaaga atcagcgaac ttaaagatag gtcaatcgag attattcagt      1440
     ctgaggaaca aagaaaaaag aatgaagaaa aatgaasaga gcctcagaga cctgtgggac      1500
     accatcaagc gtaccaatat atgcataatg ggaatcccag aaggagaaga gagaaarkgg      1560
     cagaaagaat atttaaagra atagtggccg aaaatttccc aaatttgatg aaaaacatyw      1620
     ayctwcayat ccaagaagct caataamctc caagtaggat aaactcaaag agatccacat      1680
     ttasatgcat catagtcaaa ctgctgaaaa a                                     1711
//
ID   ERV20_MD_I  repbase; DNA   ; MAM   ; 6104 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV20_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-6104
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-6104
RA   Gentles A., Jurka J.;
RT   "ERV20_MD, an ERV1 class endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 365-365 (2005).
XX
CC   [2] (Consensus)
XX
CC   There are approximately 15 full length copies of this internal
CC   region in the genome, with average similarity to consensus of
CC   ~93%. This consensus was reconstructed from the June 2005 release
CC   of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           3406..5574
FT                 /product="ERV20_MD_I_1p"
FT                 /translation="KAFFLFTDERKQFALGVLAQYLGPDLHPIAYFSKQLD
FT                 SVSRGWPPCLRAVSATVLMAEEAFKLTLGQPLEILTPPIGSSAFWRLEVTD
FT                 GSLGGRLTKYQALLLDTPSLTLKVCRTLNPATLLPLPGDPXSHDCEELIDH
FT                 TFSSRPDLKDSPLPEAEVSWYTDGSSFMENGVRKAGYSIVSQTATIEAKGL
FT                 PPGTSAQKAELIALTRALQLAEGKKANIFTDSKYAFHVLHAHGAIWKERGL
FT                 LTTKNSPLKHGKEILSLLEAVTLPSQIAVIHCRGHQGLDSNIARGNHRADL
FT                 AAKEAARATSLTALTLTPRHPTIPKGISPSYTEEEIAQAELQGFTLEDSGW
FT                 WRSPSGPLLLPNNLMWKLVMGLHNSTHLGREALTTLIKPLFTGKGISKTIR
FT                 EICRSCALCAQTNSTGALRPPPLLKPIQRRGESPGEDWQIDFTHLPPCKRY
FT                 KILLVFVDTFTGWPEAFPSRSEKAQDVTKALLNEIIPRFGLPKTLQSDNGP
FT                 AFISQITQMVSKALGITYHLHSAWHPQSSGKTERMNQTLKRALTKLCEEAK
FT                 IDWIQALPIALTRIRIAPRAKLGLSPFELLYGRPFLTSDVLLDTEIHSLVR
FT                 FSRQLGPTHQVLREYANQILPKPSTEDTEESLHPAQTGDLVYLKTWSGSNH
FT                 LTPRWEGPHRVILSTPTAVKLEGQNTWTHVSRIKPFIPPETGGEGGTEATY
FT                 SCEPLEDLKFLFCRKTQPKDTLE"
XX
SQ   Sequence 6104 BP; 1612 A; 1666 C; 1295 G; 1516 T; 15 other;
     ttttggcgcc caacgtggtt ttttggctct cctgaaagct acgcctgtac cccggatcat        60
     ccacgaggac acagcttctc aggtaggaag gagcttttct ttgactcctg aaacccccat       120
     cttttgggtg atatctctgt gggaactctt tcgtgctctc tctcccatcg gccccagatc       180
     agtctggccc ctggagtttg gggtctatct gtcggcttcc cggtatacta gaagacgttt       240
     tagttgtgtg ggaaagtctt gctgcctcag tgttcaactg agtgcttgcc taagtgctag       300
     aactgagtgc ttggtcgggc aacctgtgga cgcacagttg ttgaccctcg gtgtggaatt       360
     ggccattttt gcatctaaat gggacagaga cagagcatac cccgagattc ccctttgggg       420
     tgtatactta aaaattggaa aaaattggca ctaaacagct taaagaaaaa gcaattaatt       480
     tctttttgta atgttgtctg gccacgttac atccttggta atcaagaaac atggcctatc       540
     catggtaccc taaattataa caccatcaga caattggatt tgttctgcag aagggaaggg       600
     aaatggacag ccattcccta catttccgct ttcattaaac tcagccagaa tcctgagcta       660
     agacgattat gtcgcatgtg ccttgccacc tccttactga ccccttctgg ggaaagtccc       720
     caacaggatg ttctggatga cttagctctc ccaagcaatt tagcttctgt gaggggtagg       780
     gagataacat ctcctacact ggctgcggag cagtcaagac cttcccctcc cccaaactaa       840
     cctctactac agaatcccct ccagatcctc ctggttcctc tccccaaccc tcagctccaa       900
     aacctccgcc ttactctcgg ggttcagagc ctgagaccac tcctctctct actcccaacc       960
     gtaatatcct tttgtacccg ccactgccta aggataatgt tacctcaccc attcctcaac      1020
     caagcccact ccacaccygg agcggactga gctatggcga cagggcccac ctccttccct      1080
     atgagagagg taccctcgcc agatgggctg gctcaggtac atgttccctt ttctatgact      1140
     gatctagccc agatgaagga gaaattgggt cgctactcag aaccatacca aattcattga      1200
     gggttttaaa tcccttaccc tgcagtttga cctgtcctgg gcagatctgc atattattat      1260
     ctccacctgt tgcaccccag atgagaaaaa aaggatctgg gatttggctg tagaaatagg      1320
     tgatgagaag gccctagccg gcacatgggc aggagttcct ggtgccaccg cagtcccagg      1380
     gcaagatcct ggatgggact atatgaatga aagggacaga cttaggagag accatatgat      1440
     agattgtctc cttgaggcca tgcaaaaagg gattagaaag cgagtaaatt acaataagct      1500
     caaagaaatc actcagggaa aggaggagaa tccagccctc ttcctgtccc gattagtgga      1560
     aaccatgaag caatatacca acgtccaccc agacactgat gagggggtac ttatcttaag      1620
     gctccacttt ataggacagt agccccagac atcaggcgaa agctgcaaaa gctggatctg      1680
     ggacctcaga ctccaattaa ccaattaatg gatgctgctt ttaaggtttt tcacaacaga      1740
     gaccttgttg agacagaagg acagagacrt gagaaactcc tcacggcagc tctcacctct      1800
     ctgacctatg ggcagaggcc aaggggctct tgctacacct gcagatggga tgggcactgg      1860
     tcgaaggact gtccttcgaa gggaaaacgg cccacgactc tgtgtccagc ctgtggccaa      1920
     cagggacact ggaaacggca gtgcccctcc aaccagagac cccagtgacc ccagaggcac      1980
     attcctgacc tccagtctcc tgaggactcg caatagggct gccctagggt ttgsgtgctc      2040
     ccagtttcca tcaccatggc cgaacccagg gttattctcg aggttgaagg taagaaagtt      2100
     acctttctaa ttgatasggg agctacttat tctgttctcc aaactcacaa tggtcctaca      2160
     ttccattggc agcacaaggt aattggagtt gggggaaaga ctcttagctg tagggaaacg      2220
     gcaccactaa catgtgccca tgaagacaaa ttattccaac atatattcct ggttattcct      2280
     tcctccccat gtcctctact gggcagggac attatgaaaa aattgggctc acaattttcg      2340
     cttatctcag ttctaaactc cccaaccagt cctttgcaaa agcctgcaac aatctcttca      2400
     gaaatctggg agaaagtacc ttccattgtc tgggatcaag gcataccggg aagagccctt      2460
     caggcagagc cagtaatgat aagcctcaag cctgattccc tttacccaca caggaagcaa      2520
     tatcccattt ccccagaggc cagagaagga ttacaacctc tcatagataa attcctagcc      2580
     taaggcctct tagaagagtg ctcctcacct tgcaattctc ccatcctgcc agtgaagaag      2640
     ccaaatggga gctggccyat ggttcaagat ctcaggcata ttaatgaagc aataatttct      2700
     gttcacccca ttgtcccaaa cccgtataca atcctaacta agataccagg gaattctcag      2760
     tggttctctg tcattgactt gaaagasgcc ttcttttgca tacccttgca cccaaaatgc      2820
     agattcctct ttgcctttga gtgggttttt ccctcagacc cccagacccc atmaggtcac      2880
     atgctctgtg ctaccacagg gcctaagaga cagcccccac tactttgggg ctgccctcaa      2940
     caaagatctt agagccctga gactcaggag cagcaatgtt gatgacattt taatatctag      3000
     tccatctgag actgcytgta tcacagacac catttctacc ctaacttttc taggagaacg      3060
     gggttacaag gtttctgctt ctaaagccca acttgtctcc cagtctgtaa cttatttggg      3120
     acacacccta accccaaatt cccgctccct gaccacagac aggaaacagg ccatactgtc      3180
     cattcctgtc ccctctacca aaagacagct ccgaactttt ctgggtatgg cagggttttg      3240
     ccrtatttgg atacctaatt tcgggatcat tgcaaaacct ctctatgaag ccactaaggg      3300
     gcctgatttg gaacccctag attggggggg agaccaggaa caagcctttt cacttttaaa      3360
     aacccggctt tcttctaccc ccaccctagg gattccagac cttgaaaagc ctttttcttg      3420
     tttactgatg agagaaagca gtttgcccta ggcgttctag cccagtacct aggacctgac      3480
     ctccacccca ttgcttactt ttccaagcaa ctcgactcag ttagcagggg atggccacca      3540
     tgcttgaggg cagtctctgc cacggtcctc atggcagaag aggcatttaa actaactctg      3600
     ggtcaacccc tagaaatcct gacccccccc atcgggtcct cagcattctg gaggctagag      3660
     gtcacagatg gctctctggg gggccgtctc actaagtacc aggctctttt actggacaca      3720
     cccagcctta ccctgaaggt atgcaggaca ctgaatccag ctaccctcct ccctcttccg      3780
     ggagaccccw cctcccatga ctgtgaggaa ttgatagacc acaccttctc cagcagacca      3840
     gacctcaaag attctcctct ccctgaggca gaggtcagct ggtatacaga tgggtcctcc      3900
     tttatggaga atggggtaag gaaagcgggg tactccatag tctctcagac agccaccatt      3960
     gaggcaaagg gactcccccc agggacttca gcacaaaaag cagagctgat cgccctcaca      4020
     agagcattgc agcttgctga agggaaaaag gcaaatattt tcacagactc aaaatatgcc      4080
     tttcatgttt tacatgctca tggggctata tggaaagaaa gaggtttatt aactaccaaa      4140
     aactctccct tgaaacacgg gaaagaaatc ctgagtttac ttgaggcagt cactttaccc      4200
     agccaaatcg ctgtcatcca ctgcagagga catcagggtc tagattccaa tatagcccga      4260
     gggaatcata gggcagacct agccgccaaa gaggctgcaa gagccacttc tttgactgct      4320
     ctgaccctaa ccccacgaca ccccacaata ccaaagggca tttctccctc atacactgag      4380
     gaggaaattg cacaggcaga acttcaggga ttcacccttg aagatagtgg gtggtggcgt      4440
     tctccctctg gacctctgct cctccctaat aayctaatgt ggaagctggt tatgggatta      4500
     cataactcca cacacttggg cagagaagca ctaaccactc tgataaagcc acttttcaca      4560
     ggcaaaggca tttccaaaac catccgggaa atttgcagat cctgtgccct ctgtgcccaa      4620
     accaacagca ctggagctct taggccacct cccctcctta agcccatcca aaggagaggg      4680
     gaatcacctg gtgaggattg gcagatagat ttcacccact tgccaccttg caagaggtac      4740
     aagatccttt tagtctttgt agataccttc acaggctggc ctgaagcatt tccctccaga      4800
     tcagagaaag cacaagatgt cacaaaggcc ttactcaatg aaatcattcc taggtttggc      4860
     cttccaaaaa cccttcagag tgataatggt cctgccttta tttcccagat cactcagatg      4920
     gtctctaagg ctttgggcat cacttaccat ttacactcag cctggcatcc ccaatcttca      4980
     gggaaaacag aacgtatgaa tcagacccta aaaagagccc tcaccaaact mtgtgaggag      5040
     gcaaaaattg attggatcca agctctcccc attgccctaa ccagaatcag aattgctccc      5100
     cgggcaaagt tagggctgag tccatttgaa ttactttatg ggagaccctt tctaacctct      5160
     gatgttcttt tagatacaga aatacacagc cttgttcggt tctctagaca acttggccca      5220
     acccaccagg ttctgagaga atatgctaat caratcctcc ccaaaccctc aacagaggat      5280
     acagaggaat ctctccaccc agcccaaaca ggagatttgg tatatctgaa gacatggagt      5340
     ggatcaaacc acctaacacc ccgatgggag ggcccccata gggttatttt gtccactcct      5400
     acagctgtaa aattagaggg gcagaataca tggactcatg tctctcgtat taaacccttt      5460
     atccctccag aaacaggtgg tgaaggggga acagaagcca cttattcctg tgagccactg      5520
     gaagatctca aattcctctt ctgcagaaag acccaaccta aggacacttt ggaataagta      5580
     gctccatccc ctcctccttg ttatcttaaa tttctcttrc tctagccatg actatctctt      5640
     tccttacatt ctttgtcctt tttgtatatc aataattccc acaaagtgga aatacaagcc      5700
     caagagttac atgaggtgtc cacttggatg gctgatgtcc gtagaaaact gtttcctggc      5760
     tcatcctcct ggaaatcctg gctatatgcc ctccttgccc catttatccc tatcatcctg      5820
     ataattgggg gtatcttgat atgtggacct tgtatttgta accttgtcat ctctctagtt      5880
     gcttctaggg taaaaacatt catgggagtc accgaaatgc cagattccac cataacctct      5940
     gcaaccatcc cagcctgatg ctctggacat ggcctacagt caatacctct ctctctccta      6000
     aggggtaggc agggacatct ctatgcccat tctcagctct gaagaagtta cagaagacag      6060
     accgccrtcc ctttttccct tacatattag gagaggggga gatg                       6104
//
ID   MER3        repbase; DNA   ; MAM   ; 209 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   07-OCT-1998 (Rel. 3.09, Last updated, Version 3)
XX
DE   Nonautonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat;
KW   Interspersed repetitive sequence; MER3.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the
RT   human genome..";
RL   Nucleic Acids Res 18(1), 137-141 (1990).
XX
RN   [2]
RP   1-209
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
SQ   Sequence 209 BP; 58 A; 36 C; 46 G; 67 T; 2 other;
     cagcgctgtc caatagaact ttctgtggtg atggaaatgt tctatatctg cgctgtccaa        60
     tacggtagcc actagccaca tgtggctayt gagcacttga aatgtggyta gtgcgactga       120
     ggaactgaat ttttaatttt atttaatttt aattaattta aatttaaata gccacatgtg       180
     gctagtggct accatattgg acagcgcag                                         209
//
ID   NERV1_MD_I  repbase; DNA   ; MAM   ; 2909 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   NERV1_MD, a non-autonomous endogenous class 1 retrovirus-like
DE   element from Monodelphis domestica - consensus of internal
DE   sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; NERV1_MD_I.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-2909
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-2909
RA   Gentles A., Jurka J.;
RT   "NERV1_MD, a non-autonomous ERV1 class retroelement from the
RT   opossum M. domestica.";
RL   Repbase Reports 5(11), 399-399 (2005).
XX
CC   [2] (Consensus)
XX
CC   This non-autonomous element has characteristic internal/LTR
CC   regions of an ERV, but has no coding capacity. It is most similar
CC   to ERV18_MD, hence the designation as ERV1. Unusually for
CC   Monodelphis ERVs, the target site duplications are 3 bp. Copies
CC   are numerous and ~90% similar to the consensus. The autonomous
CC   counterpart is not identified. This consensus was reconstructed
CC   from the June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 2909 BP; 834 A; 563 C; 502 G; 999 T; 11 other;
     gtttatggca accacaagat tggatgagaa cttctcaatt ttttttttaa aagatagcct        60
     agataatttt ttttaagcca cgtttctcgc caaggctttt ccctrcaaat scttctgatt       120
     cagctcgctc ctgctgcctg cytcttgcct ccagccatcc gctccagacc tgcttgaccc       180
     agatcgctct cctggtcccg acccaccgcc ccagcccccc ccccctgatc tctggcctct       240
     gagccagatc gccccagccc agccccagga cccaggctgc tggtagctgc ccctgtgtct       300
     tcagaatcaa aaaccagctg gtaaaaacgg gggtgttctt tccttaggct acaattagcc       360
     tccacgtggc aggggaccac agggggggag aacgaggaga aggaagagac ttttccaaac       420
     aggaagtttt acaagcatgg cctatttcaa aggatatctt ttgagtgcac tgattctttt       480
     acttatctca cctgagattc aggggagaaa ttcatctccc tgcaactctt tggcccaatt       540
     tgagattcct aaaacccacc ctcactatgc tgacaatagg catctaaatg gataaaaaaa       600
     aaaacaatga actttaaaga gactggaggt tatattttta aggcttttca gactccaatg       660
     ttttataaaa atctctgtat tttattgcat tttgctgatt gttttgttta agatttaatt       720
     ttgttggttt taagttcata tattaatgta ttcaatacta ttctgttaca ctgaatcatt       780
     ttaatgtact gggttttaac tactgttata ttctgttgct tttcccctat aactatactg       840
     aacaaatatt attgaataag cccatatata aaaacagcct tttttctttt ttgactttgt       900
     aaattgtcac atagaggata gatggacttc atcaaaactg gttacaattg tataacaacc       960
     tttggaaaat ttaatgagct aaatatctca aattgatttt aaggggtttt tagacatgat      1020
     ttttagattt tttttcaaca actctgatca ttttgcctgc ctctaacagg aggtaaggtc      1080
     cattttagta gctgaagtga aatacaatta taatccccac ctcccacatt tataaaaatg      1140
     tgaatggatg ggacatcaca gtctcatacc aaaggagctg ggaagttaat cccagggcat      1200
     ggtacccctg gatgactccc aaaagaggag catctctcat ttataactct tcagctcact      1260
     ttacccttcc accaggaatg atatctagat ttcttgatga tgttctagac ccaaataagt      1320
     tttactttgt ttaaaaatat gtttgccaag gttgaaagat tgctacacct gaaaaacttg      1380
     tgacaaatat ccattttctt taaatgtcat acagcaamtt atgtaaaata tgatagtggg      1440
     tttgtttgct attgtaatta aytgggctat tgagaatttt ggggatattg atacttacat      1500
     attttactac tgttctttat aaaaaaaact gttaccttgt gaaattcatt tgcttgtact      1560
     cacagtggat catggccagg tatgaagagg aaatggatct catttttggt gagaaagcct      1620
     tgtattctat atttccttag ctgacacagt gtgtcaatga ttataagcta tatttttgaa      1680
     ttttaaaact cttttattat tatatttttc ttgcatgtgc aatatactat ttcagttttt      1740
     tattttttct ctccttttta tatttgaagc acatgtcacc agtattaaga ttttctttaa      1800
     ctttttttga ttttgcagta atataagttt aaaatatatt tgctataatg tcaatgcatg      1860
     ccccaaaagc ttgagactat aaaaatgatg ccactaattg tttaaaaaaa attatgggac      1920
     tttgcttaat gattctgtct gattccagga caagataata caaaaagagc cattgcacag      1980
     ggccaaagaa gcacaaagct aaactgaata gtgccaawag agcacaaggt caaaragaac      2040
     accaatccag atgggattga tgaaattcta agccaataca aaggacttga acctagtgtg      2100
     aggwttgagg ttgcgatgct taacatatgt taagacgtag gccttccttg tatccacact      2160
     cttctgaaaa tacttacaga caagtatctc aaatttggct cctacctggc tcctataatc      2220
     tagtcccttt tctgtctttc ataatgtggc aactttctgt agtcctggct actgactggg      2280
     taaatgctta attgcttata tcattttaat tgggccctga ttcaaggacc tgttatagat      2340
     ttatttttcc tttacttaga atttttacac ataagacttt gatagtctat atttcatcca      2400
     gaaattatct ttttttattt ggattttttt gatgtttttk atttctcttg ccaattgatt      2460
     catatacctc ataactcagc catgcatccc taagtgatcc ctgtgttttt caatcaccct      2520
     cttcaggggg ggaatgtawa attattatta ttttaaattg caaagtttaa attccttttg      2580
     agagtaattt taggttaaga aacatgctac ctctccgaat ccagaaactg aactgtttgg      2640
     agaagacacc atgaagatgc ctccacagac cacaagctgc acgagaagat ccagagtgaa      2700
     ctttggggtg tggttatttg aacatttatt ttgtatgtat actcttatgc caaaggggac      2760
     tgccccctaa ctggcttttt gtcaatgcgc ctagcaatca ttggttttgt tctcttttcc      2820
     tcttatcctc aaattattgt aatttcaaag ttggtatgtt tacaagaccc attggagara      2880
     ctagtcttcc tagggtctca ggggggaat                                        2909
//
ID   ERI1        repbase; DNA   ; MAM   ; 289 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   SINE1 SINE from Erinaceus.
XX
KW   SINE1; SINE; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Erinaceus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Erinaceidae; Erinaceinae.
XX
RN   [1]
RP   1-289
RA   Smit A.F.;
RT   "ERI1 - SINE1 SINE from Erinaceus.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   (bp 1-109 matches B2, bp 146-289matches L1 ORF2 fragment)
CC   Hedgehog  Insectivora; Erinaceidae; Erinaceinae;.
XX
SQ   Sequence 289 BP; 99 A; 61 C; 57 G; 72 T; 0 other;
     tggtctggga ggtggtgcag tggataaaac actggattct caaccataag gtcctgagtt        60
     caatccccag cagcacatgt atcagagtga tatctggttc cttctctctc tcctccatct       120
     ttttcatgaa taaataaatt aattaattaa aaaaaatatg caaataaaaa caaagagatg       180
     ccacctcacc cttgagagaa tgtcatacat caaaaacaac aacagctaca aatgctggag       240
     aggttgtggg gacaaaggaa ccctcctgca ctgctgctgg gaatgtaaa                   289
//
ID   ERV24_MD_LTR repbase; DNA   ; MAM   ; 506 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV24_MD, endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV24_MD_I.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-506
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-506
RA   Gentles A., Jurka J.;
RT   "ERV24_MD, HERVR (ERV1) class retroviral element from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 374-374 (2005).
XX
CC   [2] (Consensus)
XX
CC   LTR of ERV24_MD. 4 bp target site duplications. This consensus
CC   was reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 506 BP; 159 A; 100 C; 96 G; 151 T; 0 other;
     tgaagtagcc ccaaaaaggc caaagatgga aaaattaaaa agagataaag cagatagacc        60
     cctgtcagca tttttaggga acagacctgg cttccctccc ccaggaggtc aagctgttta       120
     tgcagataac aaactagtct ctacttagct tggggggcag gagacaaaga ggaatttcag       180
     gaatatcaaa gggtcagcga actaacattt ggctaagtga agataaacac tccttagata       240
     acaaccccag taaatctaag gattgtctcc tcatctcaga ccccacattc ctgtgttaaa       300
     gtttgtttgt tgtcagataa gaacctgata acttgtatct ttgtaaccta tataatctgt       360
     tccttaatgt caaaccgatg cagttttcca ttagggaatt ctgtcccagc tggtagattc       420
     tttatttctc tcttttatta ataaattatg gttccaataa ttgaaattct aggtgtttga       480
     actcatttgt gaagtgtacc acttca                                            506
//
ID   BTSAT2      repbase; DNA   ; MAM   ; 251 BP.
XX
AC   J00028;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine 1.706 g/ml satellite.
XX
KW   SAT; Satellite; Simple Repeat; BTSAT2; Repetitive sequence;
KW   Satellite repetitive element.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-251
RA   Pech M., Streeck E.R., Zachau G.H.;
RT   "Patchwork structure of a bovine satellite DNA.";
RL   Cell 18, 883-893 (1979).
XX
DR   GenBank; J00028; Positions       1     251.
XX
SQ   Sequence 251 BP; 82 A; 59 C; 68 G; 42 T; 0 other;
     gatcatgtgc ctctggaggc aataaacaaa gagctgagta ggcacgaatc aaacagtcag        60
     caggcaataa tcatggaact cagctgtgag gaatcatgct gctcagctgg caataatcaa       120
     gcagctgagc aggcaggaat tacacagcac agctggcaat tgtcaagcag atgacaggca       180
     ggaatcgtgc agctcagctg gcaattgtca agcagatgag cagacactaa tcacgcagct       240
     cagcaggccc g                                                            251
//
ID   SINEC1C2_CF repbase; DNA   ; MAM   ; 158 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Dog SINE element SINEC1C2_CF.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   SINEC1C2_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-158
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1C2_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 86%.
XX
SQ   Sequence 158 BP; 19 A; 49 C; 44 G; 46 T; 0 other;
     gggtgcctgg gtggctcagt ggttgagcgt ctgcctttgg ctcaggtcat gatcccgggg        60
     tcctgggatc gagtcccaca tcgggctccc tgcagggagc ctgcttctcc ctctgcctgt       120
     gtctctgcct ctctctctct ctcttcatga ataaataa                               158
//
ID   CfERV1z_LTR repbase; DNA   ; MAM   ; 459 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from dog.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae.
XX
RN   [1]
RP   1-459
RA   Smit A.F.;
RT   "CfERV1z_LTR - ERV1 Endogenous Retrovirus from dog.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   0.5% subst 5' arm considerably different from CfERV1a-c LTRs,
CC   but 3' arm and internal sequence almost same.
XX
SQ   Sequence 459 BP; 132 A; 124 C; 101 G; 102 T; 0 other;
     tgtggaggcc gagaaaatta aggccattcc actttaagtt cagcgttagc acaagtacag        60
     ccatcccagg cccctgtgaa taagagctga actttacctt acttcagtta caggaagaaa       120
     acagcttaca gcttaacgtc ctagaaagcc ccatattaga atgagaacag agcccaagcc       180
     aagggcagga agcccctatt agaataagaa cagagctcaa tgcccttgaa agccccatat       240
     cagaatgtaa acagaacttg agaaattcct ccaccccttc tggaggtccc ctagaccagc       300
     ccataaaact aagctggaac ccacctcggg gtccaagtcc ctgctccgct gtgtcgggta       360
     tacttggacc caagctcgag cttgtaaata aaccctcgtg tgtttgcatc ggtgtcggct       420
     ccttggtggt ttctcggatt cgcaatcttg ggcacaaca                              459
//
ID   CfERV1      repbase; DNA   ; MAM   ; 5919 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   ERV1 Endogenous Retrovirus from dog.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae.
XX
RN   [1]
RP   1-5919
RA   Smit A.F.;
RT   "CfERV1 - ERV1 Endogenous Retrovirus from dog.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Primes with tRNA-Pro-CCY ORF1 393-2063, ORF2 2295-4970. Closely
CC   similar to PtERV1; 0.5% subst level, somewhat more distantly to
CC   RNERV19, MuLV, and BaEV.
XX
SQ   Sequence 5919 BP; 1491 A; 1663 C; 1549 G; 1210 T; 6 other;
     tttgggggct cgtccgggat ccgagaaacc cccaggaccc catccggagg gtttcacgcg        60
     tggtgagtgc actcaacttt ttccaccttt tgcgcgcata ttttctgaga gctctaaact       120
     gtactgtacc tgtaggaatt ccaatctgta ttgggtcggc attggcttag gcggacgcgc       180
     tggcgggccg tcgaccgggg gtcttgagga gacgtccctt gcccccgcct ggaggacggg       240
     gtcctcatct gtaaggagga cggggtcctc atctgtaagg agggccggct gccagccctt       300
     cgggttactt tctgttttgt ctccgcggcc gcacggaacg tttgtctgtt accgtgttct       360
     tgttaactgt ttgcacgttt gtctgtgtta ctatgtcctt gttaactgtt tgtgcatttg       420
     tctgtgttgt tgggtccttg ttaatcgtct ttactgtctg tgtcttggtg tggattgggg       480
     acataatggg ggagacagaa accactcccc tgtctcttat gctctcccac ttctcggatg       540
     ttagggaaag agctcgtatt ctgagcatag acatacggag agagagattc caaatttatt       600
     gcatatcaga atggccaacc tttgacgtgg gatggccccg agaaggaact tttcacctac       660
     ctattatctt acaggttaag gccgtgatct tcagggacaa accggacggc cactctgacc       720
     aggtgcccta catcctgatc tggcaggaca tgatcgagaa tccccctcct tggctaaaac       780
     catttttacc ccccaaagca ggacccaccg agattctagc cctgcggaaa gccgagaagg       840
     agaccgactc tacgcccgaa gcgccccttc gtccggtctt ccaggattcc tccccggagg       900
     acctgattct cccgccgccc taccgggcac cccctccccc ttccgcccct ccattggagg       960
     catcgggggc tgcagaaggg gcgccacccc tccctgacga gggagtccct gtgcgcgggc      1020
     cagcagcggg gacacgcggt cggacccacc ggacggcccc acctccgaat gcggggccgg      1080
     ccgactccac cgcccttcct ctccgcgcca tggggccccc cgacgagact ggcgaacagc      1140
     taatgttata ttggccgttc tccaccagtg atttatataa ttggaaaacc caaaatgcaa      1200
     agttctctga taatccgaga gatctaatcg ggcttttaga tactgttctc tttacccacc      1260
     agcctacttg ggatgactgc caacagctct tgcaggttct cttcaccacc gaggagagag      1320
     aacgaattca ggtggaagcc cggaagtctg tcctgggaga ggacagacag ccgactcaaa      1380
     acccagacct cataaatgct gccttccctt tatcccgccc cacctgggac tacaactcag      1440
     ctgaaggtaa ggagagaccc cgggtccacc gccagactct aatggcaggt ctcaaggctg      1500
     ccgcgcgcaa gcctaccaat ctggccaagg tctatgatgt gaggcagggt aaggatgaga      1560
     gtccagcagc cttcttagag agagtcatag aggcttttag gcagtacacc cctatgaacc      1620
     cagaagcccc ggaaacaaag gccgcaatta tcatggcttt tgttaaccag gccgctccgg      1680
     acattaaaaa gaaattgcaa agagtagaga gactgggaga gaagagcttg caggacttag      1740
     tgatagtggc agaacgagtc tataataata gagaaagtcc ggaagaacaa caaaccaaac      1800
     taagtgaccg gcagacccga aacctggcca agatcctgct ggccacaacc atggacgacc      1860
     cacaggaaag acggaggcac ctcaagaagc tggcttcagg gacaggtaag gaggatggcc      1920
     ctggtccccc tcgggagcgc cctaagctga acaaaaacca atgcgcctat tgcaaagagg      1980
     agggccattg ggtgaaaagc tgccctaaca aaagatctaa ggcccctgcc aagatcttgg      2040
     aaatggagga cctggacgat taggggagtc agggttcggc acccctcccc gagcccaggg      2100
     taactcttaa agtggagggg caacctgttg aattcctagt ggacactggg gcacaacatt      2160
     cggttttatt acaaccccaa gggaaattgg caaacaaaac ttcatgggtg caaggggcca      2220
     cgggcaccaa acaatactca tggactaccc gaagaactgt ggatctcggc acgggccggg      2280
     tatcccactc cttcatggtc atccctgagt gtccctaccc gttgttaggt cgggatttgc      2340
     tcaccaagat gggggcacaa atttgcttcc accccgaagg ggcaaaagtc ctaaacaaga      2400
     aggggcaccc gattcaggtg cttgtcctga gtttagaaga cgaatatcgt ctccaccaaa      2460
     tgccctcagc cccaatgact gacattgacc gttggctgcg ggaatttccc caagcgtggg      2520
     cagaaactgg gggaatcggg ctggcccagc atcgaccggc catatacata gaactaaagc      2580
     cgggggcaga ccctgtcagg gtccgccaat accccatgcc tctagtagca cgaaagggaa      2640
     tcacacccca catacggcga ctactggact cgggcatatt aaggccctgc caatcggcat      2700
     ggaacactcc cttgctgccg gttcagaaac cgcactctaa cgattacagg ccagtccagg      2760
     acttgaggga agtcaaccgg cgagtagagg atatgcaccc tacggtccca aacccataca      2820
     ccctcctctc caccctgcct ccagacaaaa cttggtatac ggtattagat ttaaaagatg      2880
     cctttttcag cctgccttta gcgcccagga gccaagacct cttcgccttt gaatggacgg      2940
     accctgagaa aggcatcaat ggccagctca cctggactcg actaccacaa ggattcaaaa      3000
     attcaccgac catcttcgat gaggccttac acgaagactt gggtgagttc cgttccgagc      3060
     accctcattt gactttatta caatatgtag atgatatcct gttggcggcg gaggaccagg      3120
     acacatgcct gcgaggcacc agggacttgc tccagaccat agcggcccta ggataccggg      3180
     cctcagctaa aaaagcccag atctgcagaa cagaggtgag ctaccttggg tacaaattaa      3240
     aagatggaca aagatggttg acggatgcac ggaaggaaac cgtcttaaga atcccacagc      3300
     cgcaaaccgt ccgccaggta cgcgaattcc tggggtcagc agggttctgt cgcttatgga      3360
     ttccgggttt tgccgagatg gccagacccc tctatgaggc caccaggcac cagcaaaatt      3420
     ttgaatggac agaggccatg aacagagcct ttaatgacct taaacaggcc ttgctgtctg      3480
     ccccggctct tgggttgccc gatctagcca agcccttcta cctgtatgtg gacgagaaag      3540
     acggggtggc aaaaggggtc cttgtccagt acttaggtcc ctggaagaga cccatagcct      3600
     atctctccaa aaagctggac acggtggccg ctggatggcc cccatgctta aaaattattg      3660
     ctgcggtggc cactatggtc aaggacgcag acaaactggc catggggcaa gaactgcatg      3720
     ttaccacccc acatgctatt gaaggggtac tcaaacagcc cccagaccgc tggatcagca      3780
     atgcccgtct gacccattat cagagcctgc tgctaaaccc caccagaatt ttatttaagc      3840
     caccgacaac cctgaatccg gcaacgctac tccctaaccc agactgggac ccccctctgc      3900
     atgactgtca agaaattttg gcacaggtgc acggaatcag agctgatctc caggaccagc      3960
     cactgccgaa tgcggacgcc acctggtaca cggacggcag cagttttgtc cgagaaggan      4020
     tcagatatgc gggggcagcc gtaaccacgg agacggagac cgtctgggcg gagccactgg      4080
     cagccggaac gtcggctcaa cgggcagaac tgatcgcact ggccaaggcg ctgaccatgg      4140
     gggaaggtaa acgaataaac atctacaccg acagcaggta cgccttcgcc accgctcaca      4200
     tccacggagc cctttacagg gagagagggc ttctgacagc agagggaaag actgttaaaa      4260
     acaaaacgga gattcttgaa ctcctgaggg ccctctggct gcccaaggcc ctagccatca      4320
     tccactgtcc ggggcaccaa aaggcagaca cgccagtagc caggggaaac cggctagccg      4380
     atttaaaagc aaaggaggcg gcccttctgg tgacccaggt cttagcnacc acgctacctg      4440
     atccgggggc accgaccctg cctgacaccc ccaactatac tgatgctgac ttacactgga      4500
     tcaaacgctt gcctatgacc cagtgcttgc gtggctggtg gagggccgca gactccagca      4560
     tcatcctgcc agaggaactg ggacggcgag tcctatccaa aatgcatcgg agtactcaca      4620
     tgggaacaag gaagatggaa gacctcatac gacatgcaaa gatcactatt aaagactctc      4680
     gagcaaagat cgagcagatt gtggcgagct gccgcgcatg ccagttaacn aatgccnccg      4740
     cccatggatc taacccgggc acccggctcc gaggggaccg cccaggagcc tactgggaag      4800
     tggacttcac tgaggtaaaa cctggaaaat acgggtacag gtatttacta gtgtttgtag      4860
     atactttttc aggatggaca gaggcatttc ccaccaaaca tgaaacggca cagaccgtga      4920
     ccaagaaact gctggaagac atcgtaccga ggtatggttt tccctgttag gattgggtca      4980
     gacaacggcc caggattcgt ctctaaggta acacagggag tggcactagt acttggggca      5040
     gattggaaat tacattgtgc atataggccc cagagctcag gacaggtaga gaggatgaac      5100
     agaacattaa aggagacctt aactaaatta gccctggaga ctggcgggga ctgggtgact      5160
     ctcctcccct tcgccctata tagggtgagg aactccccat ataagatggg actgactccc      5220
     tacgagatca tgttcggtct tcctccacct gttatcccca atttaaaacc tgaggtgctt      5280
     gctgaatttg atgatcacca acttcttttc tccctccaaa tgttacaacg aacccatgag      5340
     caggtgtggc ctaagctgag ggccctctac gagactgggc cacccccgga cccccatcga      5400
     tatcggccag gtgactgggt gtacgtgcgg agataccaac accagacact tcaacctcgc      5460
     tggaagggac cctacatcgt gatcctgacc actcccaccg ctctcaaggt cgacgggatt      5520
     actccctggg tccactacac ccacgtccgg ccagctgacc cacacgccgt tctcaaggac      5580
     tttgttccag aatggaaaag ccaaccggac aaggacaatc ccctaaagct aagactgcgc      5640
     cgttctcact tatttcccac ctccaagact ccctagtccg aggttgtcct tcaaaataga      5700
     aggggattag anttagtctt cttacaacaa agggtggggt ggggatggtt atgtgctgcc      5760
     ttaaacgtag gatgttgctt cttcnctgga atgtaaatgg gagcgagaac agcaacaagg      5820
     ttggtgagaa tcctggttta atcattcccc ctggctcact ctgagagcaa cctggaccca      5880
     tgattgggtc ctgcatagga tcctctgaaa aagggggaa                             5919
//
ID   ERV19_MD_LTR repbase; DNA   ; MAM   ; 712 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV19_MD, a common endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV19_MD_I;
KW   ERV19_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-712
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-712
RA   Gentles A., Jurka J.;
RT   "ERV19_MD, a common subfamily of ERV1 class retroelement from the
RT   opossum M. domestica.";
RL   Repbase Reports 5(11), 362-362 (2005).
XX
CC   [2] (Consensus)
XX
CC   ERV19_MD appears to be a subfamily related to ERV2_MD, but that
CC   acquired different LTRs. Together with ERV2_MD, it is the most
CC   common retroviral sequence in the Monodelphis genome. This is the
CC   LTR sequence. This consensus was reconstructed from the June 2005
CC   release of the 6.8X WGS sequence.
XX
SQ   Sequence 712 BP; 183 A; 166 C; 135 G; 225 T; 3 other;
     tgaattttaa aactactcca ccctactcag accatacttt agaagatttg atttagctat        60
     ttcctgattt gtaacaatgg agatacttgg tctaacagaa tcaggtcttg ggaactctac       120
     attgctccac cctacttagt ttaacaaggt caggaatgtc tgcacccata ctcaaggatt       180
     aagtatctaa gaagatggcc ttcaacagac atgtgcagaa acagcggaca gacccctggg       240
     ctgtcctaag tcaagctaag ctaacattgg tacagatgag atgcaggaaa gtgacgtaaa       300
     accatctata tagggcacst cacttcctct cttcagcctc tttccccgga gaggcgtctc       360
     tggctggcag cgtgctaagc attctaacat cttggtgtgg tggcagctat ttgtctgggt       420
     ttttatggtg agtttgccct tgagctaatt caggttcagg catcttggct gagccctttt       480
     ggagttcagg ctgattcctt cctcctttac tctccaaaac cttaccttcc tagagcctct       540
     aatcttcctc ctggcayaag ccaggtggga gaaatcctac accctttcct tctyctttct       600
     tcttaatttc tttccactat attaattaaa tcaccataaa tttccagctg acttgggtat       660
     ttttttattt gggatatcca tggcaatcaa ataattaata tagtttaggt ca               712
//
ID   ERV25_MD_I  repbase; DNA   ; MAM   ; 6010 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV25_MD, an old endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal region.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-6010
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-6010
RA   Gentles A., Jurka J.;
RT   "ERV25_MD, HERVR (ERV1) class retroviral element from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 375-375 (2005).
XX
CC   [2] (Consensus)
XX
CC   An endogenous retrovirus that has decayed to the point that the
CC   5' LTR boundary could not be determined. Thus, the internal
CC   region may be 5' truncated. The LTR sequence ERV25_MD_LTR occurs
CC   frequently adjacent to the 3' end of this internal sequence. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
SQ   Sequence 6010 BP; 2257 A; 1124 C; 1162 G; 1467 T; 0 other;
     ccaagaattt gtatgtcctt tcaaaaggaa acctccaata cactacatga agtcagaaga        60
     acataagatt taatgcacag aaggtgcaga gaagggaaac aggggatgtc acaggggggg       120
     ggataaaaga agtggtggtg ggaaaattaa ggagagagag aaaacaagaa ttcaaaacag       180
     agagaaattc aagaatagag ggagttacaa aatgatatag taaacatgca gaacaagtta       240
     tttgagtcat ataggggcat agaagaaagt aattggaaaa ctaaagagca aatcaagaaa       300
     catctagaaa atttcttaat atgcaagtat gagttggaaa tggagagcac aaagaattat       360
     aacaaatcct ccagtgacag atagcatcaa aatttaactt ttacagtgca ggagtattac       420
     actgattctc taaaccccaa agacaaagaa atgagcataa agaaagagac agcctgagga       480
     gagtccaaaa tgacagatcc cagtacataa actttcatac cctgacaggc tgaagagcat       540
     tagcatactt ttacacagaa gaagctaaag gagagtgaaa acaaatcaac cttagaccca       600
     agagcaaaag atttctatcc aaaataaaaa actgattcac aatacctaga aatcaataat       660
     cccaaaccac catacaaact tatgataaga gatactggga aggggagagc acaattcaaa       720
     atctattcta caatgacatg ttctcccatg gaccagaaac ttcaacaaac tctagggaga       780
     tggttaagag agaataaaga gttaacagcc aagaactctc taagcagctc tgaacctcag       840
     aattctgaga ggctaaatac aggggaaacc tctcatgaag attccaaaga ttgtcacact       900
     atacttgagg caaactccca ggctgaaaat aaaaaggagg aaatcaaacc atcaaaattt       960
     ctcaagaagg ggtagagaat cacaatttga aagaagggga accagattta tcagcagaac      1020
     acaggactat agcatattaa tgggtaagat ttagttcagg acttggggaa tgtagtcatt      1080
     caacatgatg gtcccagtcc tgtaggaaca cctcacccaa gaactttatg tgtggattaa      1140
     agttggggaa caagactaca aagctctaat tgataccgag gcaacaagat ctgttttaaa      1200
     atcattccca gggaacagca ccatagatgg accagtccca gcagctaagg ccactagggg      1260
     aatacagtga gttccaaaac ttgaacgtaa gatggtgaag ctaggtcctt tacgtataga      1320
     ccatacattc ttattaatac ctggggtctc aacaaccttc tggggagggt cttcctttgt      1380
     aaaattgggg caaccatcca ctgtgaacag tcagggaaaa tctatttata cctaccaatc      1440
     aatcttttaa acattaccca cttttattct tggggcaatt ggatgaaaca cctgatcagc      1500
     tgcacacaga aataccaatg tttgatatcc ccaaagacat cccacagggc atatggctac      1560
     atatctaaat gaggtagaga ggaacactag tgaagattga ggtgaaggaa ggaatacctc      1620
     ccaagatccc tcaatacaaa ttaagcaaag aggtcataca gggcataaca ccaatcatca      1680
     agagtttgct gaagcagggc acattgagac ccatgatctc agagttcaat agcccaatat      1740
     tagcaatcaa aaagaacaaa aagaaccctg acaggacaat ttattggtga ttcattcaat      1800
     ttgagagtga tcaacaattt tataaaaaga acccatataa tcagtccatc cccaaatgcc      1860
     atcatatcag atatacctag cacagcaaac tggtttacca tcattggcct tgcaaatgcc      1920
     tattttattg tcccattgca accagatagt caaaatattt ttgcattcca gtgggggatc      1980
     ataaactctg ttggacctga ttagttcagg gctgttctga aagcgcctca atattttgcc      2040
     aactattaaa gagagatcta gaatccatca agttcaagca caacaaaata gtacactatg      2100
     tggacgatct tcttcttgaa tccccatctg ctaaaatatg cctgcaagac tcaaaaacct      2160
     tgcttagaga actatataag gcggcataag gttcaagaag aaaattgcaa tggttctcac      2220
     ctagggtaga atatatggga gatatcctag agaagggcac taggaacata tccaccaaaa      2280
     gaatcgcaga catccaacaa ttgggggtcc caagaacaaa aagacagctt agggcttttc      2340
     ttaggatttg tggatttttg aggcagtggg tcattggtta tttaaacatc tccaaatgtc      2400
     tcactgattt aacaaagaat gaggtagaag aactcccaca acttacaaag gaacacttgc      2460
     aagctttatc acagctgaag taagcaattt tattagcacc atcattgggg atatcagact      2520
     attccaaaga tttccatcta ttcgtccatg aagcaaaggg gatagctgct ggagtcctag      2580
     cccagaactt tggactgcag atgaggccaa aaacttatta tagtaccatt ctagacctag      2640
     tagcccaagg catggtccat tgtctcagaa gcatagctgc tctgatggtt aaaaaagcga      2700
     atgacttagt gttgagatgc agattgcatg ttcactctgc ccatcaaatt gaaacattgt      2760
     taaagatagt gacatgcaag catttacacc tgcaagatta tcccagtatg aggtcatatt      2820
     actgggcaat gagaatctgt ctttgaatca gtatgtacca ttaaacccag caaccctgat      2880
     tcctgacttg cccttggaag aggagccatt gcatgattgt acacaaatta tagacatagt      2940
     gcagaagtcc agacatgatt taaaagattc tctccttatc aatgctgact tagaattatt      3000
     ctcagatagc tcctcttaca tacatggggg caaaagttac agttgtatct ttggtcacac      3060
     aagatgagac actctggcat gcttatctgc ctagccatgt cagtgcacaa ggaatagaac      3120
     tcaaagctct taccatgact ctcatcttgc agaaagataa aagaatcaat attttttgtg      3180
     acttgcagta tgcattctca attttacatg gaattggaga tatatggaag aatagagggt      3240
     tcattccaat agctgggatg aaaattgcat atggaaggct tatatctcag ctcttaggag      3300
     cagttctttt gccaaaagaa gtagcggttt tgcattgtag agctcattcc tttggcaaag      3360
     ataagatatt ccagggtaac aatagagccg atgtaacatc aaaatatgcc gctagatttg      3420
     gtcccatata tgtgctgaac ttctctttag ttgaaaagca tgatatcaca caagcttaca      3480
     atgatgggga agttcagtca tgtaaacaac aattaggagc aaaattagta aatgggatat      3540
     ggatagagga aggagggaaa cccattctac ccaagatatt ataccaacat ctctgcaatg      3600
     tcatagactc cagaggacat tatgggacta tggcattgtt agatgaaata aactgatttg      3660
     gggtagctcc agggatatct atacatgcaa taacagtatg tcaggcatgt gacctttgca      3720
     gatgatacaa ccaaagtaat ttcaaaaaca aggcattagg ggtagaccac tagctttcac      3780
     atcctttgaa tgtttgcaga ttacatcaac aagcctagtg acaaaggata taagtatgct      3840
     ttagtagaca gattaacctg gtggacagag gtatatccag ctaaaaagaa taacatagcc      3900
     tttgtattca gacactcttg aaggaaataa tcccccgata tgacattcta aacagtattg      3960
     acttagatag aggaactcat tttacacttg caaaatccat caaaatctgg gtataaaggg      4020
     aatctacaca caatttacca cccagaaaat ttgggacagg tggagagaat gaacagagaa      4080
     ttaaaaactg caatgggaaa attatgtgca caaacacacc taaagtggac agaagttctt      4140
     ccacttcaac tgttccacct gagaatgaag cctagaggag atttgaacat attcccatat      4200
     gatatacttt ttggacagcc tctctggcat ggcaggattg caaagccatc ttacatttcc      4260
     acgctaggag aatgccaatt acacacccat ctaacagaga tacaagatag gctgaaagaa      4320
     ctaagaagcc taggattgtt ggtgcaaaga gtactttgca ctacacaaca tcagcccagg      4380
     agatatggta tatgtgaaaa acttcactag aagtacacca acagagccaa tggaacggac      4440
     cattccaagt cataataaca actactttga taaacattat aggaaaagaa ctgtggtacc      4500
     atacttctca tgttaaacac cactttgcct caactaaccc agaagaaatt gaaacagaaa      4560
     ttgccccaga tcacacacaa gatgtccaaa cccaaagaga aagtgaccag aatgaggaca      4620
     cacaaaatat gtatagcccc atagaaagtg atgctgaaat atgaataatg agtaaagaca      4680
     gatagatcat aatccaaaag gaaaaacatc taactctcca tctcaactct caatcactct      4740
     aaaatcacac tacaagaaca tgatatacat tcatacacat aaagcaaaca agataaactt      4800
     catactaagt ctgactcaca cgatctgaat cactcttaca cactcataat agcaactact      4860
     cttacacaca tgcatgttcc tgtaaaaaga aaaatctata atcaaggtga gacaacagtc      4920
     aagatgggtt catgtacaga ggaagacagc cggacctgag aaatcctctc agagaacacc      4980
     agagacttca aatggacaga aagaacacag gaaagaacta ttacccatga actgtatagg      5040
     aaaagaattt ctaaaaagca tgtcacgtaa gatgaatcac cgtacatatt aacttcacac      5100
     tagggaaatg catacaacac acacacaaac cctgcataag aagtaaagaa aatagaatca      5160
     acaggcaaca tgtgaagagg agcaattgac aaggaataag tatatgcatt caacagtaca      5220
     tatctagaac atgaacatga aaacacactg atttagggac ctttgtcata gataagcaag      5280
     ttcttgcagg actcaaacaa gcagaaaaga caaggctttt cctgtctggt tgactccaaa      5340
     gcagaactca tatatgtatg tatcatatgt aatgattata cagtaaacat acatgtacat      5400
     aatgtgaatt atagagcact aacacactaa cagactaact tagggtagga atgaactaac      5460
     aaactcaaac cttaataaaa tagggacaga gatagcgagg gtggaaaagg gaagttcaga      5520
     taacttagag agttaagcac agggaaagaa taatactaat cttaacatgg acacgtaaaa      5580
     atcttataag tttatagaat tgtaatagtt agaaacctta aaagcctaag atatgtaagg      5640
     agtttaaaaa tttcacgtta gaactctgta agatattagt ttaataacta gagagtttaa      5700
     caacattgtt gcatattgtt cagagatatt gttaatccta gaacctattt cattgtatca      5760
     aacctttgta ccaaaacaca acccaaacca ctttcctgaa acctgatctt agcttaggaa      5820
     ttagccaaat aaattaggtt aagaataagg acatagttaa gggttaagag attttttatt      5880
     ttgggagggg aacaggggat agaaaataga tagataggat attagaaata ataaacataa      5940
     ggtaagtaat acattcaaag caaggtaaat tgtcaagctg acaaatttgc gaaaaaccaa      6000
     aagggggaat                                                             6010
//
ID   L1_CF       repbase; DNA   ; MAM   ; 4251 BP.
XX
AC   AB012223;
XX
DT   28-MAR-2001 (Rel. 6.02, Created)
DT   28-MAR-2001 (Rel. 6.02, Last updated, Version 1)
XX
DE   Dog L1 (LINE1) element (ORF2 mRNA).
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1_CF; LINE-1.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RA   Choi Y., Ishiguro N., Shinagawa M., Kim J.C., Okamoto Y.,
RA   Minami S., Ogihara K.;
RT   "Molecular structure of canine LINE-1 elements in canine
RT   transmissible venereal tumor.";
RL   Anim. Genet 30(1), 51-53 (1999).
XX
RN   [2]
RP   1-4251
RA   Ishiguro N.;
RT   "L1_CF.";
RL   Direct Submission to Genbank (17-MAR-1998)Naotaka Ishiguro,
RL   Obihiro University of Agriculture and Veterinary Medicine,
RL   Department of Veterinary Public Health; Inada cho, Obihiro,
RL   Hokkaido 080-8555, Japan (E-mail:ishiguro@obihiro.ac.jp,
RL   Tel:0155-49-5391, Fax:0155-49-5402).
XX
DR   GenBank; AB012223; Positions       1    4251.
XX
SQ   Sequence 4251 BP; 1650 A; 837 C; 868 G; 896 T; 0 other;
     caaggctctc attcaaaatg gaaggagaga taaagagctt ccaagacagg caggaactga        60
     aagaatatgt gacctccaaa ccagctctgc aagaaatttt aagggggact cttaaaattc       120
     ccctttaaga agaagttcag tggaacagtc cacaaaaaca aggactgaat agatatcatg       180
     atgacactaa actcatatct ctcaatagta actctgaatg tgaacgggct taatgacccc       240
     atcaaaaggc gcagggtttc agactggata aaaaagcagg acccatctat ttgctgtcta       300
     caagagactc attttagaca gaaggacacc tacagcctga aaataaaagg ttggagaacc       360
     atttaccatt cgaatggtcc tcaaaagaaa gcaggggtag ccatccttat atcagataaa       420
     ctaaaattta ccccaaagac tgtagtgaga gatgaagagg gacactatat catacttaaa       480
     ggatctatcc aacaagagga cttaacaatc ctcaatatat atgccccgaa tgtgggagct       540
     gccaaatata taaatcaatt attaaccaaa gtgaagaaat acttagataa taatacactt       600
     atacttggtg acttcaatct agctctttct atactcgata ggtcttctaa gcacaacatc       660
     tccaaagaaa cgagagcttt aaatgataca ctggaccaga tggatttcac agatatctac       720
     agaactttac atccaaactc aactgaatac acattcttct caagtgcaca tggaactttc       780
     tccagaatag accacatatt gggtcaccaa tcgggtctga accgatacca aaagattggg       840
     atcgtcccct gcatattctc agaccataat gccttgaaat tagaactaaa tcacaacaag       900
     aagtttggaa ggacctcaaa cacgtggagg ttaaggacca tcctgctaaa agatgaaagg       960
     gtcaaccagg aaattaagga agaattaaaa agattcatgg aaactaatga gaatgaagat      1020
     acaaccgttc aaaatctttg ggatgcagca aaagcagtcc tgagggggaa atacatcgca      1080
     atacaagcat ccattcaaaa actggaaaga actcaaatac aaaagctaac cttacacata      1140
     aaggagctag agaaaaaaca gcaaatggat cctacaccca ggagaagaag ggagttaata      1200
     aagattcgag cagaactcaa cgaaatcgaa accagaagaa ctgtggaaca gatcaacaga      1260
     accaggagtt ggttctttga aagaattaat aagatagata aaccattagc cagccttctt      1320
     aaaaagaaga gagagaagac tcaaattaat aaaatcatga atgagaaagg agagatcact      1380
     accaacacca aggaaataca aacgatttta aaaacatatt atgaacaggt atacgccaat      1440
     aaattaggca atctagaaga aatggacgca ttcctggaaa gccacaaact accaaaactg      1500
     gaacaggaag aaatagaaaa cctgcacagg ccaataacca gggaggaaat tgaagcagtc      1560
     atcaaaaacc tcccaagaca caagagtcca gggccagatg gcttcccagg ggaattttat      1620
     caaacgttta aagaagaaat catacctatt ctcctaaagc tgtttggaaa gatagaaaga      1680
     gatggagtac ttccaaattc gttttatgaa gccagcatca ccttaattcc aaaaccagac      1740
     aaagacccca ccaaaaagga gaattacaga ccaatatccc tgatgaacat ggatgcaaaa      1800
     attctcaaca agatactggc caataggatc caacagtaca ttaagaaaat tattcaccat      1860
     gaccaagtag gatttatccc cgggacacaa ggctggttca acacccgtaa aacaatcaat      1920
     gtgattcatc atatcagcaa gagaaaaacc aagaaccata tgatcctctc attagatgca      1980
     gagaaagcat ttgacaaaat acagcatcca ttcctgatca aaactcttca gagtgtaggg      2040
     atagagggaa cattcctcga catcttaaaa gccatctacg aaaagcccac agcaaatatc      2100
     attctcaatg gggaagcact gggagccttt cccctaagat caggaacaag acagggatgt      2160
     ccactctcac cactgctatt caacatagtg gtggaagtcc tagcctcagc aatcagacaa      2220
     caaaaagact ttaggggcat tcaatttggc aaagaagaag tcaaactctc cctcttcgcc      2280
     gatgagatga tcctctacat agaaaaccca aaagtctcca ccccaagatt gctacaactc      2340
     atgcagcatt gtggtagcgt ggcaggatac atcatcaatg cccagaaatc agtggcattt      2400
     ctatacacta acaatgagac tgaagaaaga gaaattaagg agtcaatccc atttacaatt      2460
     gcacccaaaa gcataagata cctaggaata aacctaacca gggaggtaaa ggatctatac      2520
     cctcaaaact atagaacact tctgaaagaa attgaggaag acacaaagag atggaaaaat      2580
     attccatgct catggattgg cagaattaat attgtgaaaa tgtcaatgtt gcccagggca      2640
     atttacacgt ttaatgcaat ccctatcaaa ataccatgga ctttcttcaa agagttagaa      2700
     caaattattt taaaatttgt gtggaatcag aaaaaacccc gaatggccgg gggaatttta      2760
     ggaaaaaaaa ccatgtctgg gggcatctca atgccagatt tcaggttgta ctacaaagct      2820
     gtggtcatca agacagtgtg gtactggcac aaaaacagac acatagatca gtggaacaga      2880
     atagagaacc cagaagtgga ccctgaactt tatgggcaac taatcttcga taaaggagga      2940
     aagactatcc attggaagaa agacagtctc ttcaataaat ggtgctggga aaattggaca      3000
     tccacctgca ggaggatgga actagacccc tctctttcac cctacacaaa gatgaactcc      3060
     aaatggatga aagatctaaa tgtgagacca gattccatcc aaatcctaga ggagaacaca      3120
     ggccacaccc tttttgaaat cggccaccgt aacttcttgc aagatacatc cacgaaggcc      3180
     aaagaaacaa aagcaaaaat gaactattgg gacttcatca agataagaag cttttgcaca      3240
     gcaaaggata cagtcaacaa aactaaaaga caacctacag aatgggagaa gatatttgca      3300
     aatgacgtat cagataaagg gctagtttcc aagatctata aagaacttat taaactcaac      3360
     accaaagaaa caaacaatcc aatcatgaaa tgggccaaag acatgaacag aaatttcaca      3420
     gagggagaca tagacatggc caacatgcac atgaggaaat gctttgcatc aattgccatc      3480
     agggaaatac aaatcaaaac cacaatgaga taccacctca caccagtgag aatggggaaa      3540
     attaacaagg caggaaacca caaatgttgg agaggatgcg gagaaaaggg aaccctttta      3600
     cactgttggt gggaatgtga actggtgcag ccactctgga aaactgtgtg gaggttcctc      3660
     aaacagttaa aaatatacct gccctatgac ccagcaattg cactgttggg gatttacccc      3720
     aaagatacaa atgcaatgaa acgccgggac acctgcaccc cgatgtttat agcagcaatg      3780
     gccacgatag ccaaactgtg gaaggagcct cggtgtccaa cgaaagatga atggataaag      3840
     aagatgtggt ttatgtatac aatggaatat tactcagcta ttagcaatga cagataccca      3900
     ccatttgctt caacgtggat ggaactggag ggtattatgc tgagtgaagt aagtcagtcg      3960
     gagaaggaca aacattatat gttctcattc atttggggaa tataaataat agtgaaaggg      4020
     aatataaggg aagggagaag aaatgtgtgg gaaatatcag aaagggagac agaacgtaaa      4080
     gactgctaac tctgggaaac gaactagggg tggtagaagg ggaggagggc ggggggtggg      4140
     agtgaatggg tgacgggcac tgggggttat tctgtatgtt agtaaattga acaccaataa      4200
     aaaataaatt aaaaaaaaaa gatgaaacca cagaaaaaaa aaaaaaaaaa a               4251
//
ID   MER21B      repbase; DNA   ; MAM   ; 863 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   16-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   Long terminal repeat of retrovirus-like element; MER21B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   19-815
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
RN   [3]
RP   1-863
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [3] (Consensus)
XX
CC   LTR of a class I retrovirus-like element. 4 bp target site dups.
CC   Copies are on average 17% diverged from consensus.
CC   MER21B is a member of a closely interrelated group of LTRs
CC   further
CC   including MER34, MER39, LTR29, LTR48 and LTR49.
XX
SQ   Sequence 863 BP; 203 A; 188 C; 234 G; 218 T; 20 other;
     tgtgatattg tgaaatatat atttggtctt cgnccccgtt tcctggcaca nagctcctaa        60
     aacccttgga atctccngag tgataggagt ntctttgtgt gctaatgagn tgactgntgg       120
     ctggcggccc ctaggtagct tcaggatggg ggctggtcac cagaaagacc aaggcangat       180
     tagagggttg ggactttcag ccccaccccc caacctccag ggaggggaga ggggctgaag       240
     gttgagttga tcaccaatgg ccaatgatnt aatcaatcat gcctacgtaa tgaagcctcc       300
     ataaaaaccc aaaaggacng ggttcggaga gcttctggat agctgaacac gtggaggttc       360
     ctggagggtg gcgngcccgg ggagggcacg gaagctctgc gccccttctc ccatacctcg       420
     ccctatgcat ctcttcatct ggctgttcat ctgtatcctt tgtaatatcc tttataataa       480
     acnggtaaac gtaagtaaag tgtttccctg agttctgtga gccgctctag caaattaatc       540
     gaacccaagg agggggttgt gggaacccca atttatagcc ggtcggtcag aagcacaggt       600
     nacaacctgg ngcttgcgac tggcatctga agtggggggc agtcttgtgg gactgagccc       660
     tcaacctgtg ggatctgacg ctatctccag gtagatagtg tcagaattga attgaattag       720
     aggacaccca gctggtgtcc gctgnagaat tgnttgcttg cttgtnngtg gggaaaaacc       780
     cccacacatt tggtcacaga agtnttctgt gttgattgtn ntgagtgaga gaatagaaaa       840
     aacactttgt ttgtgttttt cca                                               863
//
ID   L1MEC_5     repbase; DNA   ; MAM   ; 2527 BP.
XX
AC   .
XX
DT   23-JAN-1998 (Rel. 3, Created)
DT   30-MAR-2001 (Rel. 6.02, Last updated, Version 3)
XX
DE   L1MEC_5 LINE1 repetitive element - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1M4_5; L1MEC_5;
KW   LINE1 repeat.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2523
RA   Smit A.F.;
RT   "L1MEC_5..";
RL   Direct Submission to Repbase Update (1997).
XX
RN   [2]
RP   1-2527
RA   Jurka J.;
RT   "L1MEC_5..";
RL   Direct Submission to Repbase Update (2001).
XX
CC   [2] (Consensus)
XX
CC   5' end of LINE elements with L1ME1-2 subfamily 3' ends,
CC   comprising the
CC   5' UTR, ORF1 (pos. 793-1771 or more) and part of ORF2. Updated
CC   (2001)
CC   consensus is ~85% similar to the old one.
XX
SQ   Sequence 2527 BP; 1092 A; 406 C; 472 G; 532 T; 25 other;
     aatgtnttaa aaaattcact taaaatataa taggagactt ctgcttctgg ccaagatgga        60
     gtaacaggga ccggatttac cctcctacct gaaacaacta aaaaacagac aaaatatatg       120
     aaacaatagt tttcaagaca ctggacatca ggcaacgaag gacagtgatc cctgagagat       180
     gggaaacaaa tgaggtgagc cctatgattg ccccagctta ctgccttgag agagtttcca       240
     ggctgcagtg cagrgagggg gaacccaggc agagcccagc agactccctg agttgaggag       300
     acagagctga gagtccaggg agaccaaggn tagctagagt tcataggaca gagtaccaga       360
     gaggagagag ctgcacagag agagaactct agagattctg cagagggtcc cccttgagta       420
     ttcagcagag tactgatcag cacatgcatg tgaggaaact acctgaggcc agggaaagaa       480
     ccacccaaaa ggamaaaaag gattagaggg aacagtgcct ggtactcaca cagggctagg       540
     aatagtgcct gttcccacca gccagactgg aaaacctcat aattcacagg gcattgggta       600
     gagtactcag aagggtcttg cctcagtagt ggggaataat tagccctaga ctaaacactg       660
     ctctggtccc acctaacaaa tcttaaaagc aagacctgaa agaatcaaac tgtttccaag       720
     taacttaact gtatcccaga acaaagctca agaatattta taggaataca aaaatatcca       780
     gcacccaaca aggtaaaatt cacaatgtct ggcatccaat aaaaaattac caggcatgca       840
     aagaagcagg aaaatattat aacccataat gaggagaaaa atcaatcaat tgaaactgac       900
     ccagaactga cacagaattg ttagaattag aattagcaga caagganaca ttaaaacagt       960
     tattataact gtattttata tgttcaaaaa gttaagtaga gacatggaag atataaaaaa      1020
     gacccaaatc aaacttctag agagatgaaa actacaatgt ctgagatgaa aaatacactg      1080
     gatgggatta atagcagatt aganancatt gcagaagaaa agattagtga acttgaagac      1140
     atagcaatag aaactatcca aaatgaaaca cagagagaaa aaaaaattta aaaaattaaa      1200
     aagaaaagag catcagtgag ctgtgggaca acttcaagta gcctaatata tatgtaattg      1260
     gagtccccaa aggagaggag aaaagagaaa gagagaaaaa atatttgaag aaataatggc      1320
     taaaaatttt ccaaattttg atgaaaacta taaacccaca gatccaagaa gctcaacaaa      1380
     ccccaagcac aagaaacatg aagaaaacta caccaaggca catcataatc aaattgctca      1440
     aaaccagtga taaagagaaa aatcttaaaa gcagccagag aaaaaaagac acattacata      1500
     cagaggaaca aagataagga tgacagcaga tttcttatya gaaacaatgc aagcgagaag      1560
     acagtggagc aacatcttta aagtactgaa agaaaaaaaa actntttatc ttttgtcatt      1620
     acctagaatt ctataacnaa gaaaaaaact gtcaacctag aattctatac ccagcaaaaa      1680
     tatctttcaa aaataaaggt gaaataaaga ctttttcaga tatacaaaag ctgaaagaat      1740
     ttatcaccag cagatctgca nnactacaaa aaatgttaaa ggaagtcctt caggcagaag      1800
     gaaaatgata ccagatggaa atatggatct acacaaagga atgaagagca ccagaaatgg      1860
     taactacatg ggtaaatata taaaattttt tttttttatt atttaaaatc tctttaaaag      1920
     ataattgact gtttaaanca aaaataataa caatgtattg tggggtttat aacatatgta      1980
     aawaaaatgt atgacaacaa tngcacaaag gctaggaggg gagaaatgga agtatactgt      2040
     tgtaaggttc ttatactata tgtgaagtgg tataatatca cttgaaggta gactgtgata      2100
     anttaaagat gtatactata aaccctaaag caaccactaa aataacaaaa caaagagtta      2160
     taactaataa gccaacaaag gagataanat agaatcataa aaaatattca attaatccaa      2220
     aanaaggcag aaaaaaaaaa aagraaaaaa gaacagatag gacaaataga aaacaaatag      2280
     caagangata gatttaaacc caaccatatc aataatcaca ttaaatataa atggtctaaa      2340
     caycccaatt aaaaggcaga gattgtcaga ttggataaaa aancaagact caactatatg      2400
     ctgcctacna gaaatacact ttaaatataa agacacaaat aggttaaaag taaaaggatg      2460
     gaaaaagata tatcatncga aagaataccg ccaagagnca aaaaaggtca ttttataatg      2520
     ataaagg                                                                2527
//
ID   ERV11_MD_I  repbase; DNA   ; MAM   ; 8196 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV11_MD, class 1 retrovirus from Monodelphis domestica -
DE   consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV11_MD_I;
KW   ERV12_MD_I; RNaseH; integrase; reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-8196
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-8196
RA   Gentles A., Jurka J.;
RT   "ERV11_MD, a recently-active class 1 endogenous retrovirus from
RT   the opossum M. domestica.";
RL   Repbase Reports 5(11), 347-347 (2005).
XX
CC   [2] (Consensus)
XX
CC   ERV11_MD is a class I ERV, that appears to have been active
CC   relatively recently; there are numerous genomic copies that are
CC   >98.5% similar to this consensus. The coding regions also appear
CC   to be relatively intact in the consensus. The corresponding LTR
CC   is ERV11_MD_LTR. This consensus was reconstructed from the June
CC   2005 release of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV11_MD_I_1p"
FT                 /translation="MWLQPMSALLRNWLISSMTKCIGFLVGVPLGWYFSET
FT                 INLFVTLIFIFLGIVIVVLTMIYLTSKREHSLVPSITKQIKELHTFMENQI
FT                 TEQYNITDQRIRELHTFIGEQLQEQNNIFTQKVREQNIITDQRITELHTFI
FT                 DQQHKELITITDQRIRNQNACIEQIKKEITLIYQQLMERDEVREETWREIK
FT                 TSLAELNQGRWGEIKTSLDEIKQDKWGEIRTFLQNIDRELKTSHNRSDLTL
FT                 HPPSLSDSLTNPAQNDLAQIEAPSHQPAPPHPDHPAPPPAILAPPTLVPPS
FT                 IHASYPASSAPDPPPALPPTHAHALAPPPVPAPDPPPALPPTHAHAPAPPP
FT                 VPXPALPPXLPSTLALISNPHAPTANNPNIENGASSLETVTPDSLDRSLFP
FT                 LREVPTFNKEGNLVPVRHYTPFKPDDLEKFKHNVQSFEAEPMLVIEKLENI
FT                 FRNFDPSWLDVENLLDTFLTKREKNNVISLANKKSGRGAHHWPTVDPHWNP
FT                 NIVQDHTKLALAREALLKAMRDCSDSPDAWEKFEQSRQEINETPSHFMDRL
FT                 IDVGSTYMDLDLSREKDIKHIRRQFVRNCCSAVKDYFETNCPNWESMDLEE
FT                 LRKVATYAYKNRTKKPETHNKSVSDLEKEIEILKEQLKSKGETMAPLQEST
FT                 DRSLTNPLICLFCGKRGHAMIVCRSRLRETRNNNTFRNNKYRNHNANQNDD
FT                 AQNTENDTTKRNAQQQYIRNGARPRYTQGEQPQQRGGSQKTAQASL"
FT   CDS           0..0
FT                 /product="ERV11_MD_I_2p"
FT                 /translation="RCEGGVRALESKNETFDFPDPDILMPIIPIYSPPNSK
FT                 EPHVTLKVGNSYYDCLLDTGASRSVLVSKPDEKCDSIGSLNVVGVSGKPLK
FT                 VPKLSPRMVRVGPLTVEHSFLLMPGSPTNLLGRDLLCKLQATIMCAPDGSL
FT                 SLEVPEETLNLLPVFLSESQEAKEPPTFEIPTDIPESLWATSSTDVGLLKS
FT                 ATPVQIKTKSSPPPCIPQYPLSKEAMEGITPIINSLIDQGIIFPCKSEYNT
FT                 PILPVKKPKRGPDGKHLYRFVQDLRAVNNHVIKRHSIVPNINTIISSIPST
FT                 ATYFTVVDLCSAFFSIPIHENSRHIFAFTWNGIQYSWSRLPQGYVESPTLF
FT                 AQILGQDTDNIKFKNSKLIKYVDDLLLASVDAETCQEDSKHLLLELHKRGH
FT                 KISKDKVQWCLPKVEYLGFILTAGARSISPKRIENIQKLSAPTTKKQLRAI
FT                 LGATGFCRQWIPCYGEITKPLIALTRDAVPEPLKLEPEHMSALSELKKAIL
FT                 SAPALGIPNYNKPFTLYVHERRGVASGVLTQTLGPSQRPVAYYSAQLDPIA
FT                 SGAPPCLRGVAATALLVTKTVDLVLGCPLTIMCPHEVEALLLRQRTQAFSD
FT                 QRITRYEITLLNNENITLKRCSTLNPATLLPDLPTSGEPLHSCETLVSMAE
FT                 KPRDDLLDTPLKNSDLILFTDGSSFMRDGIRYSGAAVVSEFATEWSASLPS
FT                 NISAQGAELIALKHACIIAKDKKATIYTDSRYAFGICHSVGMLWLQRGFLT
FT                 SAGKSIANAEIINEVLSALQLPEALAVVHCSAHTGGTDPVSRGNDRADAAA
FT                 KLAAIEGPELLLTLTTTDDSNLSLSYDEKEVEKWKQKFKAKQINGVWVSSE
FT                 GKPLLPRSFYHQICQSVHNNGHFGTQGIVDSVKRVWIAPGITTIASKVCSS
FT                 CSTCQAYNQHAFRGKAFGGRPLAYTPFEHLQIDFITMPKAGQYKFCLVIVD
FT                 QLTRWPEAFPTARATAAFVAKVLLKEIIPRFGLPARIDSDRGSHFTDSVLN
FT                 QIYSCLGITPKFHVPYHPQSSGQVERMNKELKTMIGKLCTETHLKWPEILP
FT                 LALFYLRSRPRGDLHISPFEMLFGHPPIQAKPFSPAYTSLLGGDTTIASYI
FT                 QELQHKLRELHESGAAVQAGPLDFSLHDLNPGDNVYIKNFQRTGATQPSWE
FT                 GPFQILLTTPTSIKVGEKDSWIHCSHVKRASSVETD"
XX
SQ   Sequence 8196 BP; 2495 A; 1838 C; 1505 G; 2350 T; 8 other;
     gtattggcgt aaccactacg ggaaaaagaa ctatatcagt cttctgatct ccttactatc        60
     acctgggaga aatcccaccc cggctacccc ctctggctct tggccctgct ttagtgcttc       120
     gaaggtttct agaacctcaa taaatttcct gaattttctt gccctttcac cccacttatt       180
     actcactccg tcagtccttt taccaaatac cttggcttaa agacacagct gccagaacag       240
     gtgagtataa aacacctttt ctcttttccc tttacccctt aagttaaatt ggggtcaaca       300
     ggattttttt tttttcccct tttttgtctc tcatttccgc ctccttttac tttaaggagg       360
     tggcttagta gattgagagg caggtagcaa cgaggaatct cagaaggagc tcttaggagc       420
     tcctagcccg caaaaagcaa aaaaaaaaaa aaaccagctg aatacagcta gggagctaat       480
     ttaaaaccca tttttttctg tttcctggcc tttctagtct taaaaattta agtgggcttt       540
     gctcaaggaa gatagcacat ggtcctagcg gttttagcct gaggactaaa gaagattgct       600
     gggacccacc catacccact ttgtaaaaga aggaggttta gtttkgcctt ttgtttacgg       660
     tctattcact cctaatcagc cctttcatag cttctacctt cctgtatgag ggtttttgta       720
     acccctccca gaagcttgat aaggagaatt tacaacacaa taggccctta acctgtatag       780
     ggttgtagac tagggagcca cctactgtaa aaaaaaaagg tacaggcaac ctagcaattg       840
     actcaaagaa agaaaaaatg tggctacaac caatgtctgc tttgcttcga aattggctta       900
     taagttcaat gaccaagtgc attggatttt tagtaggtgt tcctctagga tggtattttt       960
     cagaaactat aaacctcttc gtgaccctta tattcatctt ccttgggatt gtaattgttg      1020
     tacttacaat gatataccta acctctaaga gagaacactc ccttgttcct tctattacta      1080
     aacaaattaa ggaattacac acttttatgg aaaaccaaat cacggagcaa tataatatca      1140
     ctgatcaacg tattagggaa ctccacactt ttattgggga gcaacttcag gaacagaata      1200
     atatttttac tcaaaaagtt agggaacaga atattataac tgatcagaga attacagaat      1260
     tgcacacatt tattgatcag caacataaag aattgattac tatcactgat caaagaattc      1320
     ggaaccaaaa tgcttgtatt gaacaaatta aaaaagaaat tactcttatt tatcaacaat      1380
     tgatggaacg ggatgaagtt agggaggaaa catggcgaga gataaaaact tccctggctg      1440
     aacttaatca gggaagatgg ggagagataa aaacttccct ggatgaaatt aaacaggaca      1500
     aatggggaga gataagaacc ttcctgcaaa acattgatag ggagttaaaa acatcccaca      1560
     ataggagtga tttaactctc catcccccat cattatcaga ctccctgacc aaccctgccc      1620
     aaaacgattt ggctcaaata gaagcccctt cacaccaacc agctcctccc catcctgacc      1680
     acccagcccc tccccctgcc attcttgccc ctcccaccct ggttcctcct tccattcatg      1740
     cctcttaccc tgcctcctca gccccggatc ctccccctgc ccttcccccc acccatgctc      1800
     atgctctagc cccaccccct gttcctgccc cggatcctcc ccctgccctt ccccccaccc      1860
     atgctcatgc tccagcccca ccccctgttc ctgycccagc ccttccccct rccctcccct      1920
     ccactcttgc tctaatctcc aacccccatg ctccaacagc taataatcct aacattgaaa      1980
     atggagcaag tagcctagaa acagtaacac cagatagttt agacagaagt ttatttccat      2040
     tgagggaagt acccaccttt aataaagaag ggaacttggt gcctgtaaga cactatacac      2100
     cttttaaacc tgatgattta gaaaaattca agcacaatgt tcaatcattt gaggcagaac      2160
     caatgttggt tatagaaaaa ttagaaaata tattcagaaa ctttgaccct tcttggttgg      2220
     atgtggagaa tttgttagat acatttctga caaagagaga gaaaaataat gtcatctctc      2280
     tagctaataa gaaaagtggt agaggagctc atcactggcc aactgtagat ccacactgga      2340
     accctaatat tgtacaggat cacacaaaac tagccctggc cagagaagca ttattaaaag      2400
     ccatgagaga ctgctctgat agccctgatg catgggaaaa atttgaacaa tcccggcagg      2460
     aaattaatga gaccccctcc cactttatgg acagacttat tgacgtagga agtacatata      2520
     tggaccttga tttgtccaga gaaaaagaca ttaaacatat acgcagacaa ttcgttagga      2580
     attgttgttc agcagtaaaa gactactttg aaaccaactg tcccaactgg gagtctatgg      2640
     acctcgaaga actgaggaaa gtagcaacat atgcctataa gaatcgtaca aaaaaacctg      2700
     agacacacaa taaatcagtg tcagacttag aaaaagaaat tgaaatttta aaggaacaat      2760
     tgaaaagtaa gggagagacc atggcccctt tgcaggaatc cacagataga tcattaacaa      2820
     accccttaat atgcctcttc tgtgggaaga gaggccatgc aatgatagtc tgtaggagca      2880
     grctacggga aacaagaaat aataacacct ttaggaataa taaatatagg aaccacaatg      2940
     ccaatcaaaa tgacgatgct caaaatacag aaaatgatac taccaaaaga aatgcccaac      3000
     aacaatatat aagaaatgga gctcgaccac gctacactca gggtgaacaa ccccaacagc      3060
     gtggagggtc ccaaaaaact gcccaagcat ctttatgaag gtgtgaaggg ggggtgaggg      3120
     ccctggaatc aaagaatgag acctttgatt ttccagaccc tgatatttta atgccaataa      3180
     tccctatata ttcccccccg aacagtaagg aacctcatgt cactttaaag gtaggaaatt      3240
     catactatga ctgtctttta gacactggag catctaggtc agttctagta agcaaaccag      3300
     atgagaaatg tgattctatt ggctctttaa atgtagtagg tgtttcagga aaaccgttaa      3360
     aggtcccaaa actttctcct cgcatggtac gcgtgggacc cctaactgtt gagcactctt      3420
     ttcttttaat gcctggatct cccacaaatt tgctggggag agatttacta tgcaaattac      3480
     aagccacaat aatgtgtgcc ccagatggct ccctttcttt agaagtgccc gaggaaacct      3540
     taaatttact ccctgtattt ctctcagaga gccaggaggc aaaggagcct cccacctttg      3600
     aaatacctac agatatacca gagtctcttt gggccacatc ttctactgat gtaggcttac      3660
     ttaaatcagc tactcccgtg caaataaaaa ctaaatccag cccacctcct tgcattcctc      3720
     agtatcctct ttccaaggag gcaatggagg gcattacccc aataataaat tctttaattg      3780
     accaaggaat aattttccct tgtaaatctg aatacaacac gcccatcctc cccgttaaaa      3840
     aaccaaaaag gggacccgat ggcaaacacc tctatagatt cgtacaggat ttgagggctg      3900
     tgaacaatca cgttataaag agacactcca tagttcccaa tatcaatact attatttctt      3960
     ctattcctag cacagctaca tactttacag tagtagactt gtgctcagcc ttcttctcta      4020
     tacccataca tgagaactcg aggcatattt ttgctttcac ctggaatggc atacaatatt      4080
     cctggagtcg tctgccccag ggttatgtag aaagtccgac cttatttgca caaattttgg      4140
     gacaagatac agataatata aaatttaaaa acagcaaatt aataaaatat gtagatgacc      4200
     tactcttggc ttccgtggat gcagaaacat gtcaggaaga tagtaaacac cttcttttgg      4260
     aattgcacaa aagaggtcat aagatctcga aggataaagt tcagtggtgt ctccccaaag      4320
     tagaatattt ggggttcatt ctgacagctg gtgcccgctc tatttctccc aagcgaattg      4380
     agaatattca aaaattgagt gctcctacta ctaaaaaaca gttaagagca attctgggag      4440
     caacagggtt ttgcagacaa tggattcctt gctatgggga aattactaaa cctcttatag      4500
     cactaacaag ggatgcagtc cctgaacccc tcaaattaga gcctgaacac atgtcagctc      4560
     tatcagagct aaaaaaggct atcttatctg cccctgctct aggcatccca aattacaaca      4620
     agccatttac tttgtatgta catgagcgaa gaggagtagc ctcaggcgtt ttaactcaga      4680
     ctctggggcc ttctcagcgt ccagttgctt attattcagc ccagctggac ccaatagctt      4740
     caggagcacc accatgcctt agaggagtgg ctgctactgc tttactagtg acaaaaaccg      4800
     ttgatctagt attaggatgc ccattgacaa ttatgtgtcc acatgaggta gaagcattat      4860
     tgctaagaca gagaacacag gcattttctg atcagcgaat tacaaggtat gaaataacct      4920
     tgctaaataa tgaaaatatt actttgaaac gctgttcaac scttaatcct gccaccttgc      4980
     ttccagactt accaacttca ggagaaccat tacacagttg tgaaacacta gtgtccatgg      5040
     cagaaaagcc tcgagatgat ctcttggaca ctcccttaaa gaactcagac ctgatcttat      5100
     ttactgatgg ttcttctttc atgagggatg gcatacgcta tagtggagct gccgtagtct      5160
     cagaatttgc cactgagtgg tcagcctcat taccttctaa cattagcgct caaggagctg      5220
     aactcatagc tctgaaacat gcctgtataa ttgccaagga taaaaaggca acaatttata      5280
     cggattctag atatgctttt ggcatttgtc actcagtcgg gatgctatgg ctccagagag      5340
     gatttttaac ctcagctgga aaatccatag ctaatgctga aattattaat gaagtccttt      5400
     ctgctcttca gctgcctgaa gccctagctg tagttcattg ctcagcccat acaggtggca      5460
     ccgaccctgt ctctagggga aatgaccgag cagatgctgc tgcaaagcta gcagccatag      5520
     aagggcctga attacttcta acattaacaa ctactgatga ctcaaattta tcactttcct      5580
     atgatgagaa ggaagtggaa aaatggaaac agaaattcaa agcaaaacag atcaatggag      5640
     tctgggtgtc atctgaagga aaacccctgc tccctagaag tttctatcac caaatttgcc      5700
     aatctgttca taataatggc cactttggta cccagggcat cgtggactct gttaagagag      5760
     tatggatagc ccctggtata actaccatag cctctaaagt gtgttcatcc tgctctacct      5820
     gccaggcata taaccaacat gcctttcgtg gtaaagcctt tggtggacgt cctctggctt      5880
     acacaccttt tgagcacctg cagatagatt ttataacgat gccaaaggct ggacaatata      5940
     aattttgttt ggtcatagta gaccaactga ccagatggcc ggaagcattt cctacagccc      6000
     gagccacagc agcttttgtt gctaaggtgc ttttaaaaga aattattcct cgctttggcc      6060
     taccagcacg tattgattcc gataggggga gtcattttac tgattctgtt ctaaaccaga      6120
     tatattcttg cttggggata actccmaaat tccatgttcc atatcatccc cagagttcag      6180
     gccaagttga gaggatgaac aaagaactta aaactatgat tggaaaatta tgcactgaga      6240
     cccatttaaa atggcctgaa attctcccty tggccctatt ttatcttaga agcaggccta      6300
     gaggagactt acatatctca ccatttgaga tgctttttgg acatccgcct atacaggcta      6360
     agcctttctc cccggcttat acatcgctat tagggggaga tactactatt gcttcctata      6420
     tacaggaatt acagcacaaa ctgcgtgagc tacatgaatc cggagctgca gtacaagctg      6480
     gaccactaga cttctcactt cacgacctga acccaggaga caacgtgtat ataaagaact      6540
     tccagcgtac aggagcaacc cagccttcct gggaaggacc attccaaata ttgttaacta      6600
     ctccaacatc tataaaggtt ggagaaaagg actcttggat tcactgttct catgtaaaga      6660
     gagcatcttc tgttgagact gattgactgt atcctataca tgcattggag ataactaccc      6720
     attgacaagt ggaactgttt tattctgctt ttgacacatt gaattcctaa atttaatttt      6780
     tttccctttt ttcctttttt tctcttttcc ttattttatt attattatta tttttacatt      6840
     attttatttt ttcccttttt ctcatttcta tgtacttaag gtacatatga tcaatattaa      6900
     ttttattcta caatattagt ttaaatatat atacttgctg ttattattaa tacgcaccca      6960
     aacagcttta gactatggga acctgccatt tattgataat tgttgtggga ctatgattaa      7020
     tgtttgtgtc tgattctagg aacgagatca aacaaggagc acagagataa cctggataat      7080
     gccaaaagag ctcacaggtc taaaaatcaa agaccaatcc aggwaggatt aatgcatttc      7140
     taagccaata ctaaggactt gaacctagtg tgagactcgg ggttgcgaca cttgacagac      7200
     gttaagatgt aggccttccc tgtatccaca ctcttcgtga aaatacctac agacaagtac      7260
     ctaaggttgg ctaccatcct ggctccatcc atccctgaga acgaaggtaa aatcagacga      7320
     gggaataaca cttccctaga tataaaataa aaatctggtc ctcttttttc tctcctatag      7380
     tatggcaact tcctgtagcc ttggctgcaa atggggaagt aaaatatgct gcattctgtc      7440
     ctacagactt gtgggattag aaattactta actggaccct aatacagggg cctgtgaaaa      7500
     aaaaaaaatt tttttttatt cttgctttct caaattttgt atacatagat tttttttaat      7560
     tttgatactg attttgaatt cttctttaat ataaatatgc atatataaag ggtttatatt      7620
     ttttccctta attttttccc tttttcttct tttgattttg attttgattt tattttcata      7680
     ttgttttgtt tttcttttga attaactcac acacccccac aactaaaact tgaatcctca      7740
     gctggactca gtgttttttc aacactttct tcagggggga ttgtatttca tcaaatccaa      7800
     gatttaaatt ttgttcgaga taaatcttca gagaagaagc ttgctaacta actgaatcca      7860
     gagaatgaac tgtttgcaga aagatatcta aaccttttca ctacaggaag atccagaatg      7920
     aaccttgggg tgtggttgat tgaacatttt ttgaatgtac actcttatgc caaaggggac      7980
     tgccccctaa ttggcttttg tcaatgcgcc cagcaaaaca ttggtttgct gtctttctct      8040
     ctcctctatt tccccatatt tacaactatt ataattttcc tcttagtggg aaaaaatttt      8100
     tgtatacact tacagttaga aatttttggg gtgcagtatg cttatgttta gtgatcaatt      8160
     ggggagacta gtctcccaat catcatcagg ggggat                                8196
//
ID   L1MA2       repbase; DNA   ; MAM   ; 1051 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MA2) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1M1; L1MA2; L1MA2 subfamily; MER14;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1024-888
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-1051
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [3]
RP   1-1051
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [3] (Consensus)
XX
CC   ORF2 ends at bp 684; average divergence of copies from consensus:
CC   9.5%.
XX
SQ   Sequence 1051 BP; 412 A; 170 C; 215 G; 253 T; 1 other;
     ttaataacca gaatatataa ggagctcaaa caactctata ggaaaaaatc taataatccg        60
     attaaaaaat gggcaaaaga tttgaataga catttctcaa aagaagacat acaaatggca       120
     aacaggcata tgaaaaggtg ctcaacatca ctgatcatca gagaaatgca aatcaaaact       180
     acaatgagat atcatctcac cccagttaaa atggcttata tccaaaagac aggcaataac       240
     aaatgctggc gaggatgtgg agaaaaggga accctcgtac actgttggtg ggaatgtaaa       300
     ttagtacaac cactatggag aacagtttgg aggttcctca aaaaactaaa aatagagcta       360
     ccatatgatc cagcaatccc actgctgggt atatacccaa aagaaaggaa atcagtatat       420
     cgaagagata tctgcactcc catgtttgtt gcagcactgt tcacaatagc caagatttgg       480
     aagcaaccta agtgtccatc aacagatgaa tggataaaga aaatgtggta catatacaca       540
     atggagtact attcagccat aaaaaagaat gagatcctgt catttgcaac aacatggatg       600
     gaactggagg tcattatgtt aagtgaaata agccaggcac agaaagacaa acatcgcatg       660
     ttctcactta tttgtgggat ctaaaaatca aaacaattga actcatggag atagagagta       720
     gaaggatggt taccagaggc tgggaagggt agtggggggt tggtggggag gtggggatgg       780
     ttaatgggta caaaaaaata gttagaaaga atgaataaga cctagtattt gatagcacaa       840
     cagggtgact atagtcaata ataatttaat tgtacatttw aaaataacta aaagagtata       900
     attggattgt ttgtaacaca aaggataaat gcttgagggg atggataccc cattttccat       960
     gatgtgatta ttacacattg catgcctgta tcaaaacatc tcatgtaccc cataaatata      1020
     tacacctact atgtacccac aaaaattaaa a                                     1051
//
ID   ERV4_MD_LTR repbase; DNA   ; MAM   ; 336 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV4_MD, a class 2 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERV4_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-336
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-336
RA   Gentles A., Jurka J.;
RT   "ERV4_MD, a class 2 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 382-382 (2005).
XX
CC   [2] (Consensus)
XX
CC   The corresponding internal sequence is deposited as ERV4_MD_I.
CC   The LTR may be incomplete at the 3' end. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 336 BP; 81 A; 105 C; 62 G; 86 T; 2 other;
     tgtcagagac catatttggg gacaacttga ccaggaacaa gataaggrtt tttgggaatc        60
     tgaacaaaca agttacctcc tggaaacagg cgtcgctaag accaacggcc acaaaccata       120
     acaattcttc atgttccctc ctggtacaaa ccgtccttaa tcaccccccc ccctctacct       180
     caagcatata tattcttgcc ttgcacctgc aataaacgag ccttgacact atcagacaga       240
     ctstgtctct cttgcgtgct tggtctcccc tctctccccc tatggtcttt taggtggctg       300
     cttcacggac cccaccgttg tatccggctg gacccg                                 336
//
ID   ERV7_MD_I   repbase; DNA   ; MAM   ; 8384 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV7_MD, an endogenous retrovirus (class 2) from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERV7_MD_I;
KW   integrase; reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-8384
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-8384
RA   Gentles A., Jurka J.;
RT   "ERV7_MD, an endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 387-387 (2005).
XX
CC   [2] (Consensus)
XX
CC   This class 2 ERV is 75% similar to ERV1_MD; however, copies of
CC   the element are 85-92% similar to the consensus. The
CC   corresponding 351 bp LTR is deposited as ERV7_MD_LTR. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV7_MD_I_3p"
FT                 /translation="FKTLKALRDSVVQNGNTAPFTIALIRNISQQFLTPDD
FT                 WHVLAESTLNGGDYLNWKLKFQDLCQEQARANRRAGLNISYDQLVGQGEFA
FT                 VLDRQILYTEQIYGQIALAAKRAWQSLPAKEKVANSYTEIIQKPKESFADF
FT                 VDRLSTAIKRQIPHEGAAEVLLKDLAYRNSNSDSKRALAPIKATGSLTDFI
FT                 RACQDIGTFEHKTVLAAQLKRPKGPCFSCGQTGHFQKSCPKLQSKTLPGLC
FT                 PKCKKGYHWASLCRNRAPHNHNYKNLTHMPKN"
FT   CDS           0..0
FT                 /product="ERV7_MD_I_1p"
FT                 /translation="LQKSYTHAKKLISGQVSGPGQTRDRKQTTLPRNFELA
FT                 INSSPQQEQTSFSIKADSDLVITAQMGIFPIPTNFDFTVSQESIGLVLGKH
FT                 NLLAQGLEVLPQVIDKQMGERVNILARAISSFNITKGMEIATLLLLAKTPL
FT                 LEKNTEETEHSESXTPNLYWTQKITKDRLIMSLYVEDKIMTGILDSGADIS
FT                 VISTRDWPESWAAITPQQQLIGIGVPKNILQSARDLSWSDDEGHKGIFRPY
FT                 ILDIPQSLWGREVMAEMNITLTTSNQAHSAFFGSVMNSTTKFADPITWIDS
FT                 KPVWINQWPISREKLLHLNELIQEQLNLGHIKESNSPWNTPIFLVPKKSGK
FT                 WRLVHDLRKVNEQMLDMGTRQPGIPSPSPIPMNWNLIVIDLKDCFFHIPLS
FT                 PQDCHRFAFSVPSINFKRPFKRYEWLVLPQGMKNSSTLCQKFVAQALEEVR
FT                 KKYKGQYICQYLDDIMLAAPSNDIVQDMLADTKAALTKAKLVISPEKIQIK
FT                 PPYKYLGTIVYDQEIRPQKIEIRRDCLKTLNDFQKLMGDINWLRPFLKITT
FT                 GQLENLFATLRGDPSLSSPRVLSPKAEDELQIVEAALSAARLYRIDPSLPL
FT                 VASVISTRYTPTGALHQGDHIIEWIHLANQQTKSLTSYLELMVLIITQIRK
FT                 RSQQLIGCDPDTIHLPITQEQIQNLFAQSLPWQIALADFTGKIDNHIPSNK
FT                 ILQFVKLTPIIFPKITSMHPIINAVNVFTDASKKMVKQEQL"
FT   CDS           0..0
FT                 /product="ERV7_MD_I_2p"
FT                 /translation="KGKTKFFITHIRSHTNLPGPLSEGNSKVDALVASAFQ
FT                 KAVNSHSLLHQNAKSLKSQFDITKRQAKEIIQQCSSCAPFSSNPLPAGVNP
FT                 RGLKANQLWQMDVTQYAPFGRLKYIHVIVDTXSHVIWATAQNGEKVCHVIA
FT                 HLLESFAHLGIPKQIKTDNGTAYTSKRFAEFCKLWNISHKTGIPGNSTGQA
FT                 IVERANRTLKTQIQKQKGEYQTIYEGNIMKPKPINPNKLLKMVLLTINHFS
FT                 IPEGLTATPMQXHFECHDKDGTVQQPWVFWRLPGEKDYRGPNRIITRHWVE
FT                 GLLVFLQIMETSGLPPSISNHGEDQIQMQREQTGNQGRAQHTMQLKTRKRS
FT                 RRTTQMTSVSCTPATLKTRLMKRSLVTTHIPKTDITLLLMIFTIIXLMDTC
FT                 HAEVYWSIIPKPPILRMLTWMDKPPLVYVNDTKWLPYPILAKDIPLESEGA
FT                 SYNYSGSTVYPPFCMSTIHTDKRNSFCIPRRIQAWIVKNATDNNYIGIGMG
FT                 VIGKGDRTSHPPPHKPNHPENKKLCSNQIETLHRDLSWTDCSVQTPRKVKM
FT                 PGKVDFEXYNWGPKLHCGFYDLLTHLNRTRGYERWHIPCTTQHKIEEFPQA
FT                 DISGPRLAIEAGPIQNTQWKIMAATQSIHKFKVNIMNSGIDFENATHINIT
FT                 ACVFAPYVMLVGNTLNISINNKGLYEIQCLNCHLHQCIDSMHDNTYIAIMY
FT                 QPPLVWLPVNLTETWASTPTVHFVQKAFNIIMHRSKRFILTIIGAVVSIIA
FT                 MITALTTATIALTNSIQNQGFIQEIVSNSSELWHTQQSLDLAFKDELETLK
FT                 DAVFWLGKEVEALHTRITYPCHFNQTGYCITPLKYDNVSYEWQSVVEHIKG
FT                 AWGHHNSTLDIIHLQQEINKLDQIVYEQEAVKIASKWEATLASMDPRNWFG
FT                 RINLTNIGNIIIFIIMVIGLIILCRKGCINKAYIRNMQPEVALSHHSHHSH
FT                 CLIHDDIELQSLRM"
XX
SQ   Sequence 8384 BP; 2855 A; 1673 C; 1371 G; 2457 T; 28 other;
     gaagctctga gaaccatcas aggagcatgc tggatccctt gtgttttaac tctttgtctc        60
     tgagtctttg ttcctttgtt atgctctctc tctctctctc tctctctcta acctcttcat       120
     ccattttccc tcagtctcca ttctccttct caggtgtcca cccacaaaga aattaagtag       180
     gaactgcagg cagttccaac atatggcgcc caacagatta taaatcacct gaggagacgt       240
     attgggttca agattggaga cagagcagca gacctgcaca ttggccagtg aggtgagttg       300
     ctgttccatt ctggaatatg ggtcaaaaac tatcttctca tacctgttat attagattat       360
     tgaagtcttt aatacaaaag agaggaatta agatatcaga gactaagctc caagcattaa       420
     ttaagagtat cctaaaattt tatcctgatt ttccatcaaa aggggtagtt aatgtacaag       480
     aatgggatca aataggtcaa ataatgaaac aaaatcagaa agagggacaa aaactatccc       540
     aagatatatg gaacacatgg aatattgtac gaatggcatt agcagcagag ccattacaag       600
     attccatgga taaatctgaa aaatctttag aatttccaga acctgaacct cattcctccc       660
     cacccatatt cccaaacact tccttatctc ctccacctca agcacattcc tctaccccac       720
     ccccaccctt tagtcctaca acatatcctt ccttttcaac tctaccccct ccaccaatgg       780
     tgcctgcaaa agacaaagcc tcaacagggc cagcacttta ccctaactta tttccactaa       840
     cccatccagt cttacagaat cactcaaata ctatcccatt ggatactgca tttattcctc       900
     ctcccccacc accactccaa tatgatcctt cttttcaaat tcatcctgct cctccccaca       960
     cacctctatc cccagaagct accagaattg tctctgtcag gaaggcaata caaagagccc      1020
     tcccagagga aagagcagaa ttcttagcat gccctagtag tyctgagaga caacccaaat      1080
     aatcccaatg agcaactagc agaacacagg attttttaat tcaaaaccct taaagctctc      1140
     agagacagtg tagtacaaaa tggaaacaca gctccattca ctatagcact gattaggaat      1200
     attagtcagc agtttcttac accagatgat tggcatgtct tagcagaatc tacacttaat      1260
     ggtggtgact atttaaattg gaaattaaaa tttcaagatt tatgtcaaga acaggccaga      1320
     gcaaacagac gagctggatt aaatatttct tatgatcaat tggtaggaca aggagaattt      1380
     gcagtccttg ataggcaaat tttatataca gaacagatct atggtcaaat tgccctagcg      1440
     gcaaaaagag catggcaatc tttaccagca aaagaaaagg tggcaaattc atatacagaa      1500
     attatacaaa aacccaaaga aagttttgca gattttgtag acagattgtc cactgccatt      1560
     aaacgccaga ttcctcatga aggagctgca gaagttcttt taaaagatct tgcctataga      1620
     aattctaatt cggattcaaa aagggcattg gctcccatta aggcaactgg ttcattaaca      1680
     gatttcataa gagcttgcca ggacataggc acctttgaac ataagactgt cctggcagca      1740
     caacttaaaa gacctaaagg tccctgtttc tcatgtggcc aaacaggtca ttttcaaaag      1800
     tcttgcccta aattacaatc aaaaaccctc ccaggtctat gcccwaaatg taaaaaagga      1860
     tatcactggg catctttatg cagaaacagg gccccacata atcataacta caaaaatctt      1920
     acacacatgc caaaaaactg atctccgggc aggtctcggg cccaggacaa actcgagaca      1980
     gaaaacagac cacccttcct agaaactttg aattggctat aaattcttct ccacagcaag      2040
     agcaaaccag tttttctatc aaggcagatt cagatttagt gattacagct caaatgggaa      2100
     tcttccctat tcctacaaac tttgatttca ctgtttctca agaatccata ggtttagtat      2160
     taggtaaaca caatctactt gcacaaggac tagaagtcct gccccaggta attgataagc      2220
     aaatgggaga aagagtaaat atcttagcaa gagctatttc ttcatttaac atcacaaaag      2280
     gaatggagat agccacattg cttttactag ctaagactcc tctccttgaa aaaaacactg      2340
     aggaaacaga acactctgaa tcacasactc caaatttata ttggacacaa aaaattacta      2400
     aggacagatt aatcatgtcc ctttatgtag aagataaaat tatgacaggc attttagatt      2460
     ctggagcaga catatcagta atctctacaa gagattggcc agaatcttgg gcagcaatta      2520
     cacctcagca gcagttaatt ggtattgggg tacccaaaaa tattctacaa tctgccagag      2580
     atttatcttg gtctgatgat gaaggacaca agggaatatt tagaccttat atcctagaca      2640
     ttccacaatc tctttggggc agagaagtta tggctgaaat gaatataaca ctaaccacat      2700
     ccaatcaggc acattcagca ttttttggat ctgttatgaa ctccacaact aaatttgctg      2760
     atccaataac ttggattgat tctaagcctg tgtggatcaa tcaatggcct atatctagag      2820
     aaaaactcct acatttaaat gaattaatac aagaacaact aaacttaggg cacatcaaag      2880
     agtccaatag tccatggaac acacctattt tccttgtccc taaaaagtca ggtaaatgga      2940
     gactggttca tgatttaaga aaggtaaatg aacaaatgct tgacatggga acacgccaac      3000
     caggcattcc ctcccctagc cccattccca tgaattggaa tcttatagtg attgatttaa      3060
     aagattgttt tttccacatt cctctatccc cacaggactg ccatagattt gctttttcag      3120
     ttccctccat aaattttaaa agacctttta aaaggtatga atggctagta ctgcctcagg      3180
     gaatgaaaaa cagctccacc ttgtgtcaaa aatttgttgc acaagcactc gaagaagtaa      3240
     ggaaaaaata taaagggcaa tatatctgcc aatatttaga tgatataatg ctagcagcac      3300
     catctaatga catagttcag gacatgctag cggacaccaa agcagcttta actaaagcaa      3360
     aactagtaat atcccctgag aagattcaaa ttaaacctcc ttataaatat ctaggcacaa      3420
     ttgtttatga tcaggagatt agacctcaaa aaatagagat tcgtagggat tgtttaaaaa      3480
     ctttaaatga ttttcaaaaa ttaatgggtg atattaattg gcttagacct tttctaaaaa      3540
     ttacaacagg acaattagaa aacttatttg ccactctaag gggagaccct tcactgtcct      3600
     cacccagagt actttcaccc aaagctgagg atgaattaca aatagtggaa gcagctttat      3660
     cagcagctag attatacagg attgatcctt ctctaccttt agtagcatca gtcataagta      3720
     caaggtacac acccacgggt gcattacatc aaggagacca tataattgaa tggatacatt      3780
     tagctaatca gcaaactaaa tcactcacta gttatttaga actcatggta ttaataatca      3840
     ctcaaatcag aaaaagatcc caacaactaa ttggttgtga tccggatacc atccatctcc      3900
     ctatcacaca agaacagatt caaaatttat ttgcacagtc actaccatgg caaattgctc      3960
     ttgcagattt tacaggaaag attgataatc acattcctag taataaaata ttacaatttg      4020
     taaaattaac tcctattatt tttccaaaaa taacatctat gcatcctatt attaatgctg      4080
     taaatgtctt cactgatgca tcaaaaaaaa tggtaaagca ggagcagttg taaacaatca      4140
     tgtgatgtta atgcacacac aatacagttc cccacaaaag gctgaattgg cagcagtcag      4200
     gaatgtactt aargatgtaa cagaaccttg caacatcata tgtgattcat tgtatgttgt      4260
     gaatttagtt aactccttag aaacagcaaa aattaaacct gtccmtgatg aagaattatt      4320
     ccttttattt cgtaccacac aaactgtgat actgaaaagg caaaacaaaa ttttttataa      4380
     cacacattcg ttcacacaca aacctccccg gacctctgtc tgagggaaat tcaaaggtgg      4440
     atgcattagt tgcctctgcc tttcagaaag cagttaattc acactctcta ttacatcaaa      4500
     atgccaaatc tcttaaatct caatttgata taaccaaaag acaggcaaaa gaaataattc      4560
     agcaatgcag ttcttgtgca cctttctctt ccaatccyct tccagcagga gtaaatccac      4620
     gaggtttaaa agccaatcag ctatggcaaa tggatgtaac tcaatatgct ccttttggaa      4680
     gactaaaata tatacatgta attgttgata cctwttctca tgttatatgg gctacagctc      4740
     aaaatggaga aaaagtatgt catgttattg cacatctttt agaatcattt gcacatttgg      4800
     gcattcctaa acaaataaaa actgataatg gaactgcata taccagcaaa agatttgcag      4860
     aattttgcaa attatggaat atatcmcata aaactggcat tccaggcaac tccacaggac      4920
     aagctattgt ggaaagggct aacagaactc ttaaaaccca aatacaaaaa caaaaaggag      4980
     agtaccaaac aatttatgaa ggcaatatta tgaaacctaa gcctattaat cctaacaaat      5040
     tattaaaaat ggtactccta accatcaatc acttctccat cccagaaggg ctractgcta      5100
     ctcctatgca aawgcatttt gagtgtcatg ataaagatgg cacagtacag cagccctggg      5160
     ttttttggag attaccagga gaaaaagact ataggggacc gaacaggata ataacaagat      5220
     aacattgggt cgagggtttg cttgtatttc tacagataat ggaaacatct ggactcccac      5280
     caagcatatc aaaccatgga gaggaccaga tccagatgca gagggagcag acaggcaacc      5340
     agggcagagc acaacacacc atgcagctca agaccaggaa gagaagcaga cgaacaacac      5400
     agatgacatc agtcagctgc acaccagcca cactcaagac acgcctgatg aaacgatcac      5460
     tggtgactac acacatacca aagactgaca ttacacttct cttaatgata ttcactatta      5520
     ttrccctgat ggacacttgt catgctgaag tctattggtc tattatacct aaacctccta      5580
     tattaagaat gttaacttgg atggacaagc ccccacttgt gtatgttaat gataccaaat      5640
     ggctaccata cccaatttta gccaaagaca ttcctttgga atctgaaggg gcaagctaca      5700
     attattcagg ctctactgta taccctccat tttgtatgtc tactatacat actgacaaaa      5760
     ggaattcatt ctgtatacct cgtagaattc aagcttggat tgtaaaaaat gctactgata      5820
     acaattatat aggmataggt atgggtgtca taggaaaagg agatagaaca tctcayccac      5880
     cyccacataa acctaaccat cctgagaaca agaaattatg ttcaaatcag atagaaacat      5940
     tgcacaggga tttatcatgg acagattgtt ctgtccaaac tcctagaaag gttaagatgc      6000
     caggtaaagt agactttgag rtttataatt ggggacctaa attacattgt ggattttatg      6060
     atctattgac acatttaaat agaactagag gatatgagag atggcacatt ccatgcacaa      6120
     cacagcataa gattgaagaa tttccacagg ctgatatatc aggtcccaga cttgctattg      6180
     aggcaggtcc cattcaaaat actcaatgga agataatggc tgccacccag tcaattcata      6240
     aatttaaggt caatataatg aattcaggga ttgattttga aaatgccact cacatcaaca      6300
     tcacagcatg tgtatttgct ccttatgtaa tgttagtagg taatactctt aacatttcta      6360
     taaacaataa gggactgtat gagattcaat gcctaaactg tcacctacat caatgtatag      6420
     attctatgca tgacaatacc tatatagcta ttatgtacca accaccattg gtgtggttac      6480
     ctgtgaatct tacagagaca tgggcatcta ctccaactgt acattttgtt caaaaagcat      6540
     ttaatatcat tatgcatcgc tccaaacgtt ttatattgac aattatagga gcagtagtgt      6600
     ccatcattgc tatgattaca gcattaacta cagcaacaat tgcattaact aattccattc      6660
     agaaccaagg ttttatacaa gagattgtgt ctaattcatc tgaattgtgg cacacacagc      6720
     aaagtcttga cttagctttt aaggatgaat tagaaacttt gaaagatgct gtattttggc      6780
     taggaaaaga ggttgaagct ttacacacta gaattactta tccatgtcat ttcaatcaaa      6840
     caggatattg tattacacct ttaaaatatg ataatgtttc atatgaatgg caatctgtag      6900
     tagagcacat taaaggtgct tggggacatc ataacagcac attggatatt atacatttac      6960
     aacaagaaat taataagtta gaccaaattg tatatgaaca agaagctgta aaaattgcat      7020
     ccaaatggga agcaacttta gcttccatgg atcctagaaa ttggtttggc agaattaatt      7080
     taacaaacat tggcaatatc ataatcttca ttattatggt tattggttta atcatacttt      7140
     gcaggaaagg ttgtataaat aaggcttata tcagaaatat gcagccagaa gtggcactgt      7200
     ctcatcattc tcatcattct cattgtttaa tacatgatga tattgaacta caatcactca      7260
     gaatgtaatg tttatgggaa trwtggtacy ttttaagatt tacattaatk attgtattaa      7320
     tgtttttgaa aagyttttac atgctgatat attttgtaca ctcacactat gaatattgac      7380
     cawcttryat tagaaaaata gaaatcattt ttgaatgtaa attcttcctg ttacamactg      7440
     gattagctaa cacattgcca catggcatgt atgacataaa tttaaaaaaa attttttgca      7500
     tcaattttat tcttattttc aattagacat tttattgttt tccttttctt ttattttctt      7560
     tttcctgaat actttttctt attaattttg ctatatatct tattttctta atatttgaag      7620
     tatattgaaa gcactattaa tactctgatc ctgaactatg aattaacaat aactctaagc      7680
     ttttatattt gtacataccc aaaagcttga gactgtagga acatgacaag catttgttaa      7740
     acttcatggg actattatga gttattatgt ctgattgcat aagaagggat tgcaatggat      7800
     accttacact ttgccagaaa gcctaagcca tagacagatc tataatccat atgagatgga      7860
     tatatattgg ttgctaaggt cttgttggag gtaaaaggac gcggtgtttt gacaccctca      7920
     aacacaggtc agcctggtac caaagttcca accaaatatc tatgtggctg gcatcttggc      7980
     ttcaatatcc ctaagatcta tgcataatca gacaaaggga aagaattccc tctcatctca      8040
     aactatagtc cyttcttttg atttaaaggt ctggcaactt cttatagtcc tggctgtaca      8100
     tgggtaaaat gatatattaa tgcacctgtc ctacaggact atgggactga tatcacatta      8160
     attcaggatc actagtgagt taagatcatt ttattattat ttttaaatta ttggtcttac      8220
     ataaactttt ttaatttaat tttgctattt gatttaaaat tcatttttaa tttttatttt      8280
     tacttttgtt atattcatta ttcttatttt tgttgttttt gtttarttta taatttttta      8340
     ctattatata yactcttctt tatttttaaa caaaaagggg gata                       8384
//
ID   MAR1_MD     repbase; DNA   ; MAM   ; 210 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   MAR1_MD, a tRNA-derived SINE element from Monodelphis domestica.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; MAR1_MD;
KW   MAR1.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-210
RA   Monodelphis domestica sequencing consortium ;
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-210
RA   Gentles A., Jurka J.;
RT   "MAR1_MD, a tRNA-derived, L1-mobilized SINE from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(10), 319-319 (2005).
XX
CC   [2] (Consensus)
XX
CC   Similar over 132 bp to SINE-1_MD, but appears to be L1-mobilized.
CC   The presence of a poly-A tail, and 15-16 bp TSDs suggests that L1
CC   is the autonomous element. MAR1_MD has been highly prolific, with
CC   over 500,000 copies in the current genome assembly. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
SQ   Sequence 210 BP; 58 A; 52 C; 55 G; 45 T; 0 other;
     gggggcagct gggtagctca gtggattgag agccaggcct agagatggga ggtcctaggt        60
     tcaaatctgg cctcagccac ttcctagctg tgtgaccctg ggcaagtcac ttgaccccca       120
     ttgcctagcc cttaccactc ttctgccttg gagccaatac acagtattga ctccaagacg       180
     gaaggtaagg gtttaaaaaa aaaaaaaaaa                                        210
//
ID   ERV3_MD_LTR repbase; DNA   ; MAM   ; 618 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV3_MD, a class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV3_MD_I;
KW   ERV3_MD_LTR; Long terminal repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-618
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-618
RA   Gentles A., Jurka J.;
RT   "ERV3_MD, a class 1 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 380-380 (2005).
XX
CC   [2] (Consensus)
XX
CC   LTR corresponding to ERV3_MD_I. 4 bp TSDs. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 618 BP; 140 A; 155 C; 143 G; 178 T; 2 other;
     tgtggaaagg aaacaagact gacagtttgt gggggaargg gccaactggg agtggcagtt        60
     gggtcttgtg actagcactt ccttcctgcc gggggragtg gggtgggtct ggcttcctgg       120
     tgttggagga gagaggagct tgttcagccc agtctggagt ggcatgctct tcttggttca       180
     gcccaaagac acaggcttct gaaggttaga attgttcttg tttgctttct gtgtactgct       240
     aagattctga attagaacaa cgagagtaga cgggagtggg acaaactctc cgccagcctc       300
     tggcctggcc tcaggtctga agctgagaaa aactccaatc ccaactggtt attaaacttt       360
     atattatttg aattcgcagt cagataagtg gactatcttt tctggtcata gagggagctg       420
     aacttcagtt tcagtcattc aaagacaaac cgtccttatt ggacccctgc tgtttcctct       480
     cagcaggggg catctccctc ccttgcctca ccaagcaata ttccctctct ccccttaact       540
     cctccttacc ccatacaaac ctcccattta tccccctgtt ttccaatctt cctatttcct       600
     ttcccaataa atattaca                                                     618
//
ID   L2-2_MD     repbase; DNA   ; MAM   ; 973 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   30-NOV-2005 (Rel. 10.1, Last updated, Version 2)
XX
DE   L2-2_MD, an L2 element from Monodelphis domestica - consensus
DE   sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; L1-9_MD; L2.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-973
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-973
RA   Gentles A., Jurka J.;
RT   "L2-2_MD, an old subfamily of L2 element from the opossum M.
RT   domestica.";
RL   Direct Submission to Repbase Update (30-NOV-2005).
XX
CC   [2] (Consensus)
XX
CC   Previously misannotated as an L1 (L1-9_MD). A fragment of the
CC   original L2/CR1 element; copies are around 26% divergent from the
CC   consensus sequence. There are approximately 12000 copies of this
CC   fragment in the Monodelphis assembly. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 973 BP; 217 A; 360 C; 108 G; 286 T; 2 other;
     ctccctggcc accctttcca gtactggctg caccttcact cattctcctt agctcactgg        60
     ttgaggtggg gagttggaat actccttgct ccccattgcc acttccaggt tctccctctt       120
     tcccatcact cagtaacctc tcttcctttg aggttcatgc tattcatatc taccacccaa       180
     tcaaaatcct ggtagctgtt gtctacagac ctccaggtca ctccccttcc ttcctcaatg       240
     agtttaatac ctggctcaca atttttctct cctccccaac tcctgccctc atactagggg       300
     acttcaacat acatattgat tctccctcaa ataccctaac cactcagttc ctcaacctac       360
     tcacttccca tgagctactc ctccacccca cctcagccac acacaaagat ggtcataccc       420
     ttgatcttgc catcacccac aaatgtacca cctccatgtt caagaattct gaaatcccct       480
     tatctgacca taatctattg gcttttcacc tctccctctg ccttccctta caaaacccta       540
     ctctttatcc acactatgac ctccaatccc ttgacccctc aattctctcc caggccatct       600
     cccctgcact agccactctc tcctcttytc cccatcttga ccccttggtg aaccaattca       660
     actctacact gtcctcctct cttgaatccc tagccccctt atcatattac caattatgcc       720
     cagccaaacc tcagccttgg atcactccca ccatttattg cctttgctcc tacacatrtg       780
     ctgctgatga aagtggagaa aatcatgcaa ccattctgac tgggtccact acaaatttat       840
     gttacacaac ctcaacgggt cctcactgct gctaggcaat cctactatac ctcccttatc       900
     aactcactat cccactctcc acagtggctc ttccaaacct tttcatccct cctcaaacct       960
     cccatgtccc att                                                          973
//
ID   MSR1        repbase; DNA   ; MAM   ; 281 BP.
XX
AC   K03500;
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Human 37 BP minisatellite repeats, specific to chromosome 19.
XX
KW   MSAT; Satellite; Simple Repeat; MSR1;
KW   Tandemly repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-281
RA   Das K.H., Jackson L.C., Miller A.D., Leff T., Breslow L.J.;
RT   "The human apolipoprotein CII gene contains a novel chromosome 19
RT   specific minisatellite in its third intron..";
RL   J. Biol. Chem 262, 4787-4793 (1987).
XX
DR   GenBank; K03500; Positions       1     281.
XX
CC   This is a periodic sequence with periodicity 37 bp.
CC   First 37 nt are equivalent to a consensus sequence.
XX
SQ   Sequence 281 BP; 58 A; 147 C; 44 G; 32 T; 0 other;
     agtcaagacc cccagcccct cctccctcag acccaggagt caagaacccc cagcccctcc        60
     tccctcagac ccaggagtca agaaccccca gcccctcctc cctcagaccc aggagtcaag       120
     accccccagc ccctcctccc tcagactcat gagtccagac ccccagcccc tcctccctca       180
     gacccaggag tccagacccc cagcccctcc tccctcagac ccaggagtcc agacccccag       240
     cccctcctcc ctcagaccca ggagtccagg ccccacccct c                           281
//
ID   MER44C      repbase; DNA   ; MAM   ; 733 BP.
XX
AC   .
XX
DT   01-MAY-1996 (Rel. 1.04, Created)
DT   28-JUN-2000 (Rel. 5.05, Last updated, Version 3)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MER2 family; MER44;
KW   MER44C; Repetitive sequence; TIGGER7.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-733
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RP   1-733
RA   Smit A.F.;
RT   "MER44C..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   Internal deletion product of TIGGER7 MER2-family DNA transposon.
CC   23 bp terminal inverted repeats, TA target site.
CC   Consensus sequence reversed from [1] in agreement with Tigger7.
XX
SQ   Sequence 733 BP; 197 A; 165 C; 182 G; 189 T; 0 other;
     cagtagtccc cccttatccg cggtttcgct ttccgcggtt tcagttaccc gcggtcaacc        60
     gcggtccgaa aatattaaat ggaaaattcc agaaataaac aattcataag ttttaaattg       120
     cgcgccgttc tgagtagcgt gatgaaatct cgcgccgtcc cgctccgtcc cgcccgggac       180
     gtgaatcatc cctttgtcca gcgtatccac gctgtatacg ctacccgccc gttagtcact       240
     tagtagccgt ctcggttatc agatcgactg tcgcggtatc gcagtgcttg tgttcaagta       300
     acccttattt tacttaataa tggccccaaa gcgcaagagt agtgatgctg gcaattcgga       360
     tatgccaaag agaagccgta aagtgcttcc tttaagtgaa aaggtgaaag ttctcgactt       420
     aataaggaaa gaaaaaaatc gtatgctgag gttgctaaga tctacggtaa gaacgaatct       480
     tctatccgtg aaattgtgaa gaaggaaaaa gaaattcgtg ctagttttgc tgtcgcacct       540
     caaactgcaa aagttacggc cacagtgcgt gataagtgct tagttaagat ggaaaaggca       600
     ttaaatttgt gggtggaaga catgaacaga aacgtgttcc gattgatggc aatcgggttc       660
     ggtactatcc gcggtttcag gcatccactg ggggtcttgg aacgtatccc ccgcggataa       720
     ggggggacta ctg                                                          733
//
ID   BTSAT6      repbase; DNA   ; MAM   ; 680 BP.
XX
AC   M36668;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine 680 bp repeated unit of 1.723 satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; BTSAT6;
KW   Satellite repetitive element.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-680
RA   Piucienniczak G., Skowronski J., Plucienniczak A., Jaworski J.;
RT   "Nucleotide sequence of bovine 1.723 satellite DNA.";
RL   Z. Naturforsch., C, Biosci 40, 242-246 (1985).
XX
DR   GenBank; M36668; Positions       1     680.
XX
SQ   Sequence 680 BP; 118 A; 239 C; 213 G; 110 T; 0 other;
     gatcatgggc tggttcccct gcgctgcggc tgtgctaggg agcccaaacg cccaggggaa        60
     gcccgcacag cacatccacc tgcctctagg cgggaggaca gctccaggga aggcccggtc       120
     tggcaggcgc tttctgggca caaacggagc aacactctgg ctgtggagct gcctccccaa       180
     gccaggggca ccgggaccct gattccctcc gtgcggcgct agtctgggcg gggaagcacc       240
     agcttgggaa tgcagcctgg ggcgcttcct ttccctcgga aagagctctc cccgcgggag       300
     gctttggcag tgtgcacacc cccagcccct aagccctctg caaggacgcc tggctcctag       360
     gtccgaagga aggcgagagc tgagctgagg caccagtcag gcaccactca cggctcccac       420
     actcccgcag cctgctcctt cccgggcgcg aacgcagaag ctgggcaggg cttggggagg       480
     ctcgcccagc acagagcagc ctcttggccg gggctctgtt ctatcccctg ggcgcagagc       540
     tggagctccc cggtgtggaa gctcactcgg tccttcccag tacaggcttg caagcaccca       600
     ccggcagcca gcctcttctc tcccgcgttc cgggcattgg gctccaaacc tgggaccaaa       660
     gtaactgccc ggagctcact                                                   680
//
ID   NERV2_MD_LTR repbase; DNA   ; MAM   ; 347 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   NERV2_MD, a non-autonomous endogenous class 1 retrovirus-like
DE   element from Monodelphis domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; NERV2_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-347
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-347
RA   Gentles A., Jurka J.;
RT   "NERV2_MD, a non-autonomous ERV1 class retroelement from the
RT   opossum M. domestica.";
RL   Repbase Reports 5(11), 402-402 (2005).
XX
CC   [2] (Consensus)
XX
CC   Corresponds to the internal region NERV2_MD_I. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 347 BP; 87 A; 79 C; 60 G; 120 T; 1 other;
     tgtaaaaata gacttgaact ctggacttca atccccacaa gcctttgctc cacttcccca        60
     aaatgctttg taatctcacg gaattctgag gtgggccgag atcgagaagg gatttaacct       120
     gattgcaaag gcttttgttt ctttttggac ttccgttttg gagcagacgt ggctctttcc       180
     ataatgtagg tgaggtcttg tctaggcctc tggcctaggc acgtttttct tatcctgtat       240
     tttctttaat ccttaatctt taataaacct ctwaaaaata taatactcct tgcagagaga       300
     aactaatttc tacctgcctc agtctcccct aaattttaat ctttaca                     347
//
ID   ERE2        repbase; DNA   ; MAM   ; 249 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   SINE from Equus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Equus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Perissodactyla; Equidae.
XX
RN   [1]
RP   1-249
RA   Smit A.F.;
RT   "ERE2 - SINE from Equus.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Horse  Perissodactyla; Equidae;   June 02.
XX
SQ   Sequence 249 BP; 62 A; 60 C; 81 G; 45 T; 1 other;
     gggggccggc ccggtggcan agcggttaag ttcgcgcgtt ccgcttcggc ggcccggggg        60
     ttcaccggtt cggatcccgg gtgcggacat ggcaccgctt ggcaaaagcc atgctgtggt       120
     aggcgtccca catataaagt agaggaagat gggcacggat gttagctcag ggccagtctt       180
     cctcagcaaa aagaggagga ttggcagcag ttagctcagg gctaatcttc ctcaaaaaaa       240
     aaaaaaaaa                                                               249
//
ID   L1S1_SS     repbase; DNA   ; MAM   ; 394 BP.
XX
AC   X15410;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Pig hox2.4 gene 3'end and L1Ss repeat 5'end.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; Hox-2.4 gene;
KW   L1 repeat; L1S1_SS; SSL1S1; Repetitive sequence.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-394
RA   Miller R.J.;
RT   "L1S1_SS.";
RL   Direct Submission to Genbank (07-1989)Miller J.R., Institute of
RL   Animal Physiology and Genetics Research, Babraham Hall, Cambridge
RL   CB2 4AT, U K..
XX
RN   [2]
RP   1-394
RA   Baay F.M., Miller R.J.;
RT   "Direct submission.";
RL   Unpublished.
XX
DR   GenBank; X15410; Positions     182     575.
XX
SQ   Sequence 394 BP; 170 A; 60 C; 74 G; 90 T; 0 other;
     taataattac cttaaatgtc agtggactga atgctccaaa caaaagacaa agtgtggcat        60
     tagagaccca ccttaaggca aagaggcata aattgaaagt aagggggtgg aaaagacatt       120
     catgagaatg taaatgatac aaaagcagga gtcacagtac tcatataagg ccaagtaggc       180
     taaaacaaag ggcgtaaaga aagaatgaca ctattaatga taaaaggatc aattcaagat       240
     gaggatatta catttgtgaa tatatatgtc cctaatatgt gagcacccaa atacaaacaa       300
     ctaatatatt catagatata aaagagaatt tgatgggaac aaaataatag gatactttaa       360
     cactccactc acatcaatga acagatcctc taga                                   394
//
ID   MLT1D       repbase; DNA   ; MAM   ; 505 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1D subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; MER26; MLT1D;
KW   MaLR family; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   334-465
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1D retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 18-19%. Intermittant subfamily
CC   between MLT1C and MLT1E2; 83% full-length similarity to MLT1C.
XX
SQ   Sequence 505 BP; 145 A; 101 C; 146 G; 112 T; 1 other;
     tgtggtaggc wgaataatgg ccccccaaag atgtccacgt cctaatcccc ggaacctgtg        60
     aatatgttac cttacatggc aaaagggact ttgcagatgt gattaagtta aggatcttga       120
     gatggggaga ttatcctgga ttatccgggt gggcccaatg taatcacaag ggtccttata       180
     agagggaggc aggagggtca gagtcagaga aggagatgtg acgacggaag cagaggtcgg       240
     agtgacgacg ttgctggctt tgaagatgga ggaaggggcc acgagccaag gaatgcgggc       300
     ggcctctaga agctggaaaa ggcaaggaaa cggattctcc cctagagcct ccagaaggaa       360
     cgcagccctg ccgacacctt gattttagcc cagtgagacc catttcggac ttctgacctc       420
     cagaactgta agataataaa tttgtgttgt tttaagccac taagtttgtg gtaatttgtt       480
     acagcagcaa taggaaacta ataca                                             505
//
ID   CarERV4b_LTR repbase; DNA   ; MAM   ; 462 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-462
RA   Smit A.F.;
RT   "CarERV4b_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   ( 13 elements ) 16% subs (U5 is quite different in related
CC   elements). Related to MER65D. 4 bp TSDs.
XX
SQ   Sequence 462 BP; 138 A; 115 C; 82 G; 124 T; 3 other;
     tgtgaaaatt aataaaggga aacctcacta aagtggactc gggatgctag aaggggaggc        60
     tggaaggggg agccntacca ctcaatgtca attacaggaa gaattgtcaa ttacagaccc       120
     taacagaaga atcctcaaca ggaaagaatc atcaattaca ggccccaaca gggaaagatg       180
     tacattgcat ctcctacaag aaatcgacta cccccgcaac tcagccaatg agaaaccgtc       240
     atcaccctga actcttgctt ttctccaatg gactttcgtt caaaacaacc cctcccaact       300
     tcctccttct tctccataaa ataacgttcc tctcctttgt ttgttggact tgcctatggt       360
     tttgccatag cttgcntgtc ccgaattgca attctctgct attcccgaat aaacccattt       420
     ttgctggtaa aataactggc ngttttattt ttaaggttaa ca                          462
//
ID   L1-Y_CF     repbase; DNA   ; MAM   ; 6298 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.1, Created)
DT   17-NOV-2004 (Rel. 9.1, Last updated, Version 1)
XX
DE   Young L1 subfamily from dog.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1-Y_CF; LINE1;
KW   young subfamily.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-6298
RA   Jurka J.;
RT   "Consensus sequence of young, possibly active LINE1 subfamily
RT   from Canis familiaris.";
RL   Repbase Reports 4(10), 282-282 (2004).
XX
CC   [1] (Consensus)
XX
CC   Individual copies are over 99% identical to L1-Y_CF consensus
CC   sequence.
XX
SQ   Sequence 6298 BP; 2214 A; 1350 C; 1413 G; 1321 T; 0 other;
     ggggggagga gcaagatggc ggaagagtag ggtctccaaa tcacctgtct ccaccaaact        60
     acctagaaaa ccttcaaatt atcctgaaaa tctatgaatt cggcctgaga tttaaagaga       120
     gaccagctgg aatgctacag tgagaagagt tcgcgcttct atcaaggtag gaagacgggg       180
     aaaaagaaat aaaggaacaa aggcctccaa gggggagggg ccccgcgagg agccgggctg       240
     aggccggggc gagtgtcccc aggacaggag agccccgtcc cggaggagca ggagctgcac       300
     cgaccttccc gggcggaaag gggctcgcgg ggagttggag caggacccag gagggcgggg       360
     atgccctcgg gctcccgggg acagtaacag caactgcgcg cccaggagag tgcgccgagc       420
     tccctaaggg ctgcagcgcg cacggcggga cccggcggga cccggagcag ctggaggggc       480
     tcgggcggcg gctccgcgga gggggctgcg cggccccggg agcagctcgg aggggctcgg       540
     gcagaggaag aggctccgtg cggagggggc tgcgcggttc caggagcagc tcggaggggc       600
     tcgggcggcg gctccgcgga gggggctgcg cggcccggga gcgcgaatcc accagcgcag       660
     gctccggagc acagggcgcc gggacacagc ccaggatccc gcctcccccg ggacaggcag       720
     aggccgggag ggcccaggac agcgaggacg ctcctgcccc agctgagcag atcagcggcc       780
     ccgccccgga gcctccaggc cctgcagacg gagttcctgc cggagctgaa tccaggtttc       840
     cagagctgcc ccgccactgg ggctgttcct cctgcggcct cacggggtaa acaaccccca       900
     ctgagccctg caccaggcag gggcacagca gctcccccaa ctgctaacac ctgaaaatca       960
     gcacaacagg cccctccccc agaacaccag ctagacggac aacttccagg agaagccaag      1020
     ggacttaaag tacacagaat cagaagatac tccccggtgg ttcttttttt gtttgtttgt      1080
     ttttgttttt gtttttgttt ttgtttttgt tttgttttgc tttttgattt gtttccttcc      1140
     cccaccccct ttttttctcc tttctttttc tttctctttt tcttcttttt tttttcgttt      1200
     tttttttctt tttcttccct ttttttttct ctttctcttt tctttccttc tttctctcct      1260
     ctctttttct ctttttccca atacaacttg cttttggcca ctctgcactg agcaaaatga      1320
     ctagaaggaa aacctcacct caaaagaaag aatcagaaac agtcctctct cccacagagt      1380
     tacaaaatct ggattacaat tcaatgtcag aaagccaatt cagaagcact attatacagc      1440
     tactggtggc tctagaaaaa agtataaagg actcaagaga cttcatgact gcagaattta      1500
     gagctaatca ggcagaaatt aaaaatcaat tgaatgagat gcaatccaaa ctagaagtcc      1560
     taacgacgag ggttaacgag gtggaagaac gagtgagtga cctagaagac aagttgatag      1620
     caaagaggga aactgaggaa aaaagagaca aacaattaaa agaccatgaa gatagattaa      1680
     gggaaataaa cgacagcctg aggaagaaaa acctacgttt aattggggtt cccgagggcg      1740
     ccgaaaggga cagagggcca gaatatgtat ttgaacaaat tctagctgaa aactttccta      1800
     atctgggaag ggaaacaggc attcagatcc aggaaataga gagatccccc cctaaaatca      1860
     ataaaaaccg ttcaacacct cgacatttaa ttgtgaagct tgcaaattcc aaagataagg      1920
     agaagatcct taaagcagca agagacaaga aatccctgac ttttatgggg aggagtatta      1980
     gggtaacagc agacctctcc acagagacct ggcaggccag aaagggctgg caggatatat      2040
     tcagggtcct aaatgagaag aacatgcaac caagaatact ttatccagca aggctctcat      2100
     tcaaaatgga aggagagata aagagcttcc aagacaggca gcaactaaaa gaatatgtga      2160
     cctccaaacc agctctgcaa gaaattttaa gggggcctct taaaattccc ctttaagaag      2220
     aagttcagtg gaacagtcca caaaaacaaa gactgaatag atatcatgat gacactaaac      2280
     tcatatctct caatagtaac tctgaatgtg aacgggctta atgaccccat caaaaggcgc      2340
     agggtttcag actggataaa aaagcaggac ccatctattt gctgtctaca agagactcat      2400
     tttagacaga aggacaccta cagcctgaaa ataaaaggtt ggagaaccat ttaccattcg      2460
     aatggtcctc aaaagaaagc aggggtagcc atccttatat cagataaact aaaatttacc      2520
     ccaaagactg tagtgagaga tgaagaggga cactatatca tacttaaagg atctattcaa      2580
     caagaggact taacaatcct caatatatat gctccgaatg tgggagctgc caaatatata      2640
     aatcaattat taaccaaagt gaagaaatac ttagataata atacacttat acttggtgac      2700
     ttcaatctag ctctttctat actcgatagg tcttctaagc aaaacatctc caaagaaacg      2760
     agagctttaa atgatacact ggaccagatg gatttcacag atatctacag aactttacat      2820
     ccaaactcaa ctgaatacac attcttctca agcgcacatg gaactttctc cagaatagac      2880
     cacatattgg gtcacaaatc gggtctgaac cgataccaaa agattgggat tgtcccctgc      2940
     atattctcgg accataatgc cttgaaatta gaactaaatc acaacaagaa gtttggaagg      3000
     acctcaaaca catggaggtt aaggaccatc ctgctaaaag ataaaagggt caaccaggaa      3060
     attaaggaag aattaaaaag attcatggaa actaatgaga atgaagatac aaccgttcaa      3120
     aatctttggg atgcagcaaa agcagtccta agggggaaat acatcgcaat acaagcatcc      3180
     attcaaaaac tggaaagaac tcaaatacaa aagctaacct tacacataaa ggagctagag      3240
     aaaaaacagc aaatagatcc tacacccaag agaagaaggg agttaataaa gattcgagca      3300
     gaactcaacg aaatcgagac cagaagaact gtggaacaga tcaacagaac caggagttgg      3360
     ttctttgaaa gaattaataa gatagataaa ccattagcca gccttattaa aaagaagaga      3420
     gagaagactc aaattaataa aatcatgaat gagaaaggag agatcactac caacaccaag      3480
     gaaatacaaa cgattttaaa aacatattat gaacagctat acgccaataa attaggcaat      3540
     ctagaagaaa tggacgcatt cctggaaagc cacaaactac caaaactgga acaggaagaa      3600
     atagaaaacc tgaacaggcc aataaccagg gaggaaattg aagcagtcat caaaaacctc      3660
     ccaagacaca agagtccagg gccagatggc ttcccaggag aattttatca aacgtttaaa      3720
     gaagaaatca tacctattct cctaaagctg tttggaaaga tagaaagaga tggagtactt      3780
     ccaaattcgt tctatgaagc cagcatcacc ttaattccaa agccagacaa agaccccgcc      3840
     aaaaaggaga attacagacc aatatccctg atgaacatgg atgcaaaaat tctcaacaag      3900
     atactggcca ataggatcca acagtacatt aagaaaatta ttcaccatga ccaagtagga      3960
     tttatccctg ggacacaagg ctggttcaac acccgtaaaa caatcaatgt gattcatcat      4020
     atcagcaaga gaaaaaccaa gaaccatatg atcctctcat tggatgcaga gaaagcattt      4080
     gacaaaatac agcatccatt cctgatcaaa actcttcaga gtgtagggat agagggaaca      4140
     ttcctcgaca tcttaaaagc catctatgaa aagcccacag caaatatcat tctcaatggg      4200
     gaagcactgg gagcctttcc cctaagatca ggaacaagac agggatgtcc actctcacca      4260
     ctgctattca acatagtact ggaagtccta gcctcagcaa tcagacaaca aaaagacatt      4320
     aaaggcattc aaattggcaa agaagaagtc aaactctccc tcttcgccga tgacatgata      4380
     ctctacatag aaaacccaaa agtctccacc ccaagattgc tagaactcat acagcaattc      4440
     ggtagcgtgg caggatacaa aatcaatgcc cagaagtcag tggcatttct atacactaac      4500
     aatgagactg aagaaagaga aattaaggag tcaatcccat ttacaattgc acccaaaagc      4560
     ataagatacc taggaataaa cctcaccaaa gatgtaaagg atctataccc tcaaaactat      4620
     agaacacttc tgaaagaaat tgaggaagac acaaagagat ggaaaaatat tccatgctca      4680
     tggattggca gaattaatat tgtgaaaatg tcaatgttac ccagggcaat atacacgttt      4740
     aatgcaatcc ctatcaaaat accatggact ttcttcagag agttagaaca aattatttta      4800
     agatttgtgt ggaatcagaa aagaccccga atagccaggg gaattttaaa aaagaaaacc      4860
     atatctgggg gcatcacaat gccagatttc aggttgtact acaaagctgt ggtcatcaag      4920
     acagtgtggt actggcacaa aaacagacac atagatcagt ggaacagaat agagaatcca      4980
     gaagtggacc ctgaacttta tgggcaacta atattcgata aaggaggaaa gactatccat      5040
     tggaagaaag acagtctctt caataaatgg tgctgggaaa attggacatc cacatgcaga      5100
     agaatgaaac tagaccactc tctttcacca tacacaaaga taaactcaaa atggatgaaa      5160
     gatctaaatg tgagacaaga ttccatcaaa atcctagaga agaacacagg caacaccctt      5220
     tttgaactcg gccatagtaa cttcttgcaa gatacatcca cgaaggcaaa agaaacaaaa      5280
     gcaaaaatga actattggga cttcatcaag ataagaagct tttgcacagc aaaggataca      5340
     gtcaacaaaa ctcaaagaca acctacagaa tgggagaaga tatttgcaaa tgacatatca      5400
     gataaagggc tagtttccaa gatctataaa gaacttatta aactcaacac caaagaaaca      5460
     aacaatccaa tcatgaaatg ggcaaaagac atgaacagaa atctcacaga ggaagacata      5520
     gacatggcca acatgcatat gagaaaatgc tctgcatcac ttgccatcag ggaaatacaa      5580
     atcaaaacta caatgagata ccacctcaca ccagtgagaa tggggaaaat taacaaggca      5640
     ggaaacaaca aatgttggag aggatgcgga gaaaagggaa ccctcttaca ctgttggtgg      5700
     gaatgtgaac tggtgcagcc actctggaaa actgtgtgga ggttcctcaa acagttaaaa      5760
     atatacctgc cctacgaccc agcaattgca ctgttgggga tttaccccaa agatacaaat      5820
     gcaatgaaac gccgggacac ctgcaccccg atgtttctag cagcaatggc cacgatagcc      5880
     aaactgtgga aggagcctcg gtgtccaacg aaagatgaat ggataaagaa gatgtggttt      5940
     atgtatacaa tggaatatta ctcagctatt agaaatgaca aatacccacc atttgcttca      6000
     acgtggatgg aactggaggg tattatgctg agtgaagtaa gtcagtcgga gaaggacaaa      6060
     cattatatgt tctcattcat ttggggaata taaataatag tgaaagggaa aataagggaa      6120
     gggagaagaa atgtgtggga aatatcagaa agggagacag aacgtaaaga ctgctaactc      6180
     tgggaaacga actaggggtg gtagaagggg aggagggcgg ggggtgggag tgaatgggtg      6240
     acgggcactg ggtgttattc tgtatgttag taaattgaac accaataaaa aaaaaaaa        6298
//
ID   MARINER2    repbase; DNA   ; MAM   ; 1300 BP.
XX
AC   U49974;
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   19-FEB-1997 (Rel. 2.01, Last updated, Version 1)
XX
DE   Mariner2 transposable element, complete consensus sequence.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MARINER2;
KW   terminal inverted repeats; transposase.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Oosumi T., Belknap R.W., Garlick B.;
RT   "Mariner transposons in humans.";
RL   Nature 378, 672-672 (1995).
XX
RN   [2]
RP   1-1300
RA   Robertson M.H., Zumpano L.K., Lohe R.A., Hartl L.D.;
RT   "Reconstructing the ancient mariners of humans.";
RL   Nature Genet 12, 360-361 (1996).
XX
DR   GenBank; U49974; Positions       1    1300.
XX
CC   repeat_region 1..31
CC   repeat_region 1269..1300
CC   /rpt_type=terminal inverted repeat
CC   CDS 182..1237
CC   /codon_start=1
CC   /product="mariner transposase".
XX
SQ   Sequence 1300 BP; 441 A; 241 C; 258 G; 360 T; 0 other;
     caaggggtct tcaaaaagtt catggaaaat gcgtattatg aaaaaactat gcatggattt        60
     caaaattttt tgcaccaaaa taaactcata ctaacttgtt ataacatgtc tgaacaggat       120
     ctagtttgag gcactaagaa ggataagaca tcagtttgaa aagagcccct atcagagcaa       180
     catgaattct gctaaaattg aagcaagaac aaacatcaaa tttatggtga agcttgggtg       240
     gaagaatggt gaaatcattg atgctttacg aaaagtttat ggggacaatg ccccaaagaa       300
     atcagcagtt tacaaatgga taactcgttt taagaaggga caagacaatg ttgaagatga       360
     agcccacagt ggcagaccat ccacatcaat ttgtgaggaa aaaattaatc ttgttcatgc       420
     cctaattgaa gaggaccaac aattaacagc agaaacaata gccaacacca tagacatctc       480
     aattggttca gcttacacaa ttctgactga aaaattaaag ttgagcaaac tttccactca       540
     atgggtgcca aaaccattgc acccagatca gctgcagaca agagcagagc tttcaatgga       600
     aattttaaac aagtgggatc aagatcctga agcatttctt cgaagaattg taacaggaga       660
     tgaaacatgg ctttaccagt acaatcctga agacaaagca caatcaaagc aatggctacc       720
     aagaggtgga agtggtccag tcaaagcaaa agtggactgg tcaagagcaa aggtcatggc       780
     aacagttttt tgggatgctc aaggcatttt gcttgttgac tttctggagg gccaaagaat       840
     gataacatct gcttattatg agagtgtttt gagaaagtta gccaaagctt tagcagaaaa       900
     acgcccggga aagcttcacc agagagtcct tctccaccat gacaatgctc ctgctcattc       960
     ctctcatcaa acaagggcaa ttttgcgaga gtttcgatgg gaaatcatta ggcatccacc      1020
     ttacagtcct gatttggctc cttctgactt ctttttgttt cctaatctta aaaagatctt      1080
     taaagggcac ccatttttct tagttaataa tgtaaaaaag actgcattga catggttaaa      1140
     ttcccaggac cctcagttct ttagggatgg actaaatggc tggtatcatc gcttacaaaa      1200
     gtgtcttgaa cttgatggag cttatgttga gaaataaagt ttatattttt tatttttatc      1260
     ttttaattcc attttccatg aactttttga agtcccctta                            1300
//
ID   CERVSAT     repbase; DNA   ; MAM   ; 1066 BP.
XX
AC   AY064466; AY064467; AY064468; AY064469;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Centromeric repetitive DNA from Cervidae species - a consensus.
XX
KW   Satellite; Simple Repeat; CERVSAT; Centromeric satellite;
KW   Cervidae.
XX
OS   Muntiacus muntjak vaginalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Cervidae;
OC   Muntiacinae; Muntiacus; Muntiacus muntjak.
XX
RN   [1]
RA   Li C.Y., Lee C., Chang S.W., Li Y.S., Lin C.C.;
RT   "Isolation and identification of a novel satellite DNA family
RT   highly conserved in several Cervidae species.";
RL   Chromosoma 111(3), 176-183 (2002).
XX
RN   [2]
RA   Kohany O., Jurka J.;
RT   "CERVSAT consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 94%.
XX
SQ   Sequence 1066 BP; 288 A; 219 C; 242 G; 308 T; 9 other;
     gactgatttc ctgggttaag agccaatttt tacagtttca agrcaaagaa aattcctrct        60
     ggaaggttga tattaggtga ttggrtgggg taccataggg tgtttactgg agtgggcatc       120
     tttgcctggt agggagtcag gaagctcatt agcratgatc aggtkctttt ggcaacagtt       180
     gcaaaggggg cccagtcmga ttcacaggtg accttggttc tgggscccac ttctrtggcc       240
     ttggtgtgag gmctcccagc tgtggccttg gggaaggagt cacctcaaca agactgaccc       300
     tgcttcagag taaaagttcc atcaagtttt ctctgcagga gagatctagt gatcctagat       360
     ctgtttggaa aagtcttgga cactgcaggg acacatactg agtgtgaacc tggatattga       420
     accttgttgg caaaactcac cttttctctc tgttggcatt aaaagggtgt gggctgacag       480
     ctgcctgaga atccatccaa ttgacaattt cctatttaca acataaatga gtttggtcaa       540
     attatttcta tttctatgca aacaggcagc ttgcaactcc ttgtggcagg atcatttcca       600
     atagattgtc aacgaatcaa ggtaacaaca ttatgacact cagcacattt agatataatt       660
     tcctaagcct ttttcctgag ggacagaccc aatatgagct aggaatgtgt tcaaaaggct       720
     cagaaagtgc aggaaaatac actggctatg actggaaatt agggtctctg tgcaaacctg       780
     gagttctgac atcttacaat ctagacagtt cctgatagac agatgcatga aaaacactct       840
     acttttatgt ttttctttca tcaaaggaac atggatttcc tagcattctg tgtgctgaga       900
     gtaactcact gctctaaaat gcttgcttgg acttcatttt cagtaagaac ttcccctgac       960
     tgtgttacag tcaggacggt cccacactca cagggaaaaa caaactaaca tccaaacgtt      1020
     tgttcctcag gttttctctg taggagagat ccagtgatcc taggtc                     1066
//
ID   ERV22_MD_LTR repbase; DNA   ; MAM   ; 583 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV22_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-583
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-583
RA   Gentles A., Jurka J.;
RT   "ERV22_MD, a middle-aged ERV1 class endogenous retrovirus from
RT   the opossum M. domestica.";
RL   Repbase Reports 5(11), 370-370 (2005).
XX
CC   [2] (Consensus)
XX
CC   Consensus of LTR corresponding to ERV22_MD_I. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 583 BP; 158 A; 93 C; 135 G; 197 T; 0 other;
     tgttaagaga gtttttctta atttctcctt tttctcttta agaggcaagg gagcaaaaat        60
     atttctgagt aggagccccc tgctgtgcag actgtcagtt ggtgacagtt aggagggtgt       120
     ggctaagaat tggtaggtaa attgcaggca gttgaaaggg gcttttgtct ctgggtcccc       180
     tggagatcag aggtgtctgt ctgtgtctct gtaaaaaact ggcagtttga ataactgaca       240
     gttgatagag agaaaaggat ttaaggagtt agaaggtggt taatgtttat tgattaactt       300
     aagttggtag ttagatagtg ggtatattat tagatagaca aagtaggtag ataggccgga       360
     cttgccctgg tagaagacac tgccctcaaa ggcagataga tttagggttt tttagaaatt       420
     ttagttagga ttaggatctt aggtataggt atgatttctc tcactttcct cctttctatt       480
     tcctatccga actttcctca aaataaacta agtgttttgt gttttaccaa actgctctcc       540
     tgactttttt tcaaactcct accccaaaat ttaacccttc aca                         583
//
ID   ERV19_MD_I  repbase; DNA   ; MAM   ; 7977 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV19_MD, a common endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV19_MD_I.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-7977
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-7977
RA   Gentles A., Jurka J.;
RT   "ERV19_MD, a common subfamily of ERV1 class retroelement from the
RT   opossum M. domestica.";
RL   Repbase Reports 5(11), 361-361 (2005).
XX
CC   [2] (Consensus)
XX
CC   ERV19_MD appears to be a subfamily related to ERV2_MD, but that
CC   acquired different LTRs. Together with ERV2_MD, it is the most
CC   common retroviral sequence in the Monodelphis genome. The
CC   corresponding LTR is ERV18_MD_LTR. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV19_MD_I_1p"
FT                 /translation="CPTTHCPYPLPPHTNEPHVTLKVGNTYYDCLLDTGAS
FT                 RSVLKSTPDLHCYSVGSENVMGVSGIPQRVKKLSPRMVSVGPLEVQHSFLL
FT                 MPDSPLNLLGRDLLCKLRATITCSPDGSLSLEVPEESLNLLPVILSESQEG
FT                 KEHPTFVIPEDIPESLWATSSSNVGLLKLAVPVQIKTKSSPPPSIPQYPLS
FT                 KEAIEGITPVINSLIDQGIIIPCKSEYNMPILPVKKPKRGPDGKHLYRFVQ
FT                 DLRAVNNHVIKRHSVVSNIHTIISSIPSTATYFTVVDLCSAFFSIPIHENS
FT                 RHIFAFTWKGSHYTWSHLPQGYMESPSLFAQILSQDTDNITFKNSKLIKYV
FT                 DDLLLASTDAEACQEDSKHLLLELHKRGHKISKGKVQWCLPKVEYLGFILT
FT                 AGARFISPKXIENIQNLSTPTTKKQLRAILGATGFCRQWIPCYGEITKPLI
FT                 ALTRDSVPEPLKLEPEHLSALSDLKQXILSAPDYNKPFTLYVHEXRGVASG
FT                 VLTXTLGPSQCPIAYYSAQLDPVASGAPPCLRGVAVTALLVTKTVDLVLGC
FT                 PLTIMCPHEVEALLLRHRTQAFSDQRITRYEITLLNSENITLKRCTTLNPA
FT                 TLLPDLPTSGEPLHSCETLVSMAEKPQDNLLDTPLDNPDLVLFTRWFLFYE
FT                 GWHTLHWSCYSHRICH"
XX
SQ   Sequence 7977 BP; 2555 A; 1608 C; 1497 G; 2309 T; 8 other;
     caatgctaaa attatccttt acagttttgg ctgaccacat cggttgtgat gaaataccct        60
     caatcttctt aactttccta aaccttttct ctactgtgac tatccctaag ttcagctttt       120
     aatagcttat tttgatcagc tgtagaggta agtaaatttg gattttttyc cctctctcct       180
     taaattagat agaatacagc tgtttttctt tttttttttt taaatccaaa gcarcaggac       240
     tgggaaagct gtttagctat gaatcccctt tccctcaggg aacaactgcc tagattactc       300
     ttaattagga gtgaagggga cctaaagaga gttttggcct tgccctgctc cccacatgtt       360
     ttgtgaagcc cactaggaaa ataatttata tatatatata tatatatata tatatatata       420
     tatatatata tatatatata tatatatata tacatatatg aaatgaatac tacattcttc       480
     gacatttata tggtggttga agaattaggg acattgagga attcagcata cctccaattt       540
     tttatattat taggtaatgt catttttgta ctcctcagta ctgtgtttag agatgctaac       600
     aaaaaattat ttgaagctga aattcagaaa aacacacaaa attctgaagc taaaatacaa       660
     gaaattatgc aagaatctga agctaaaaca cagaaaatta taaaaaaatg caagataaaa       720
     cacaggaaat tataaaaaaa atttgaggct aaaatgcagg agaacataca agcccaattg       780
     gataatttaa aatgttttta caggatcaat tggcaaacat ccaccccacc agaaacaggt       840
     ctggacatga cagacctgtt tctgaacctc taaatgagga aatttccttc cccgaaatag       900
     agatggaaaa caccttccct atagctcagc taacagactg gttctctcat ggtctgcaaa       960
     tcttggctga acttaatccc caagaccctt cccctgcaat cccagtttct catgttcctt      1020
     ctcctacaca aaacaacaaa ttccagccca aaggaaatct tgtccttcta aagaaactcg      1080
     tcttagtcaa actgacccac aggtaccaaa ttcaattaga ggcctgtttc ctctaagaga      1140
     agtacctgaa ataggatgga acagggatgt ggtgacttta aggcacaata tactgtttac      1200
     tccccaagaa ataaatgaat ttacatgaaa tattcccaca tatgaacaag atccctttct      1260
     agtaacaaaa aagatgacag acatattttt tcagtataat ccatcttaca aggacattga      1320
     aaacttgcta caggcttttt taactgaacg tgagaaaaat aaaataattg ctcatgtcaa      1380
     caaaacccgg gggcgcaatg cagcacattg gccatctcag gatcccgaat gggactataa      1440
     tgactctgag gatcttttac aactatacca ttgtagagag gccatcctaa cagcaatgag      1500
     agagtgtgca gacagtacag ataagtggac agaatttgaa aaaattaagc aaaatgagga      1560
     agagacaccc tccagattca tggacagaat aatcgagttt gggggtagat acctggattt      1620
     tgacctatct aaagaaaatt gcataagaca agttagaagg cactttgtca ataactcttg      1680
     caaagtgatt agggattatt ttagaacaca ttgcccaaga tggccagaga tggaccttga      1740
     agaattgcag aaaacagctc tatatgtttc aaagggaaac aaagaaaagg aggaagaaaa      1800
     taatgatgtc atggaggaaa taaagaattg agatgtttaa aagataagat ggctaaaata      1860
     gaaagtgggc atgatactca accaatgaca cttgcccctc tccaggaatc taattatcaa      1920
     tccattacct gccaattctg tgagaagaag ggccacagaa tggtagagtg tagaacttta      1980
     ctcaaggtta tcagaaggaa tacacagttt aataacaact acagaagtga taattataga      2040
     aataactata ataatgataa tggaaaccac aactttagga atgataacta taggaataga      2100
     tattgggaaa atgataactc aaaccaaata actccacaac aatataactt aagtggtgct      2160
     catccaaaaa atacttgggg tgctaatgcc cctcaggggg gtgcccttca ggggggtgcc      2220
     caaggaactt cccaaataca atgaaggtgt ctggggggct ggggcacagg aatcagagga      2280
     tacaaccttt gattttctag accctgatgt cctactaccc attgtcccta tccactgccc      2340
     ccccatacta atgaacccca tgttacctta aaggtgggta acacctatta tgattgtctt      2400
     ttagacactg gagcttccag gtctgtatta aagagtacac ctgatttaca ttgttattct      2460
     gttggctcag agaatgtaat gggagtgtca ggaatacccc aaagggttaa aaaactttcc      2520
     cctagaatgg tgtctgtagg acccctagag gtacaacatt ccttcctttt gatgcctgac      2580
     tcccctttaa atttgctggg gagggacctt ctatgcaaac tcagagccac aataacttgc      2640
     tccccagatg gttccttatc attggaagta cctgaggaat ctttaaattt actccctgta      2700
     attctctcag agagtcagga ggggaaagag catcccacct ttgtaatacc tgaagatata      2760
     ccagagtctc tttgggccac atcttcttcc aatgtaggct tacttaagtt ggctgttcct      2820
     gtgcagataa aaactaaatc tagcccacct ccttccattc ctcagtatcc cctctcaaaa      2880
     gaggcaattg agggtattac cccagtaata aactcattaa ttgatcaggg aataataatc      2940
     ccttgtaaat ctgaatacaa catgcccatc ctgcctgtta aaaaaccaaa aagggggccc      3000
     gatggcaagc acctctatag attcgtacag gatctgaggg ctgtgaacaa ccatgttata      3060
     aagagacact ccgtagtttc caacatacat acgattattt cttctattcc tagcacagct      3120
     acatacttta cagtagtaga cttgtgctca gccttctttt ccatacccat acatgagaac      3180
     tccaggcata tctttgcttt cacctggaag ggctctcatt atacatggag tcatctgcca      3240
     cagggttaca tggaaagccc aagtttattt gcacaaattt tgagccaaga cacagataat      3300
     ataacattta aaaatagcaa attaatcaaa tatgtagatg atctactctt ggcttcaaca      3360
     gatgcagaag catgtcagga agatagtaaa caccttcttt tggaattgca caaaagagga      3420
     cataagatct caaagggtaa agttcagtgg tgtctcccta aagtagaata tttggggttc      3480
     atcctgactg caggtgcccg ctttatttct cccaaacraa ttgagaatat tcaaaattta      3540
     agcactccta ccactaagaa acagttgaga gcaattttag gagcaacagg gttttgtaga      3600
     caatggattc cttgctatgg ggaaattact aaacccctta tagcactaac aagggattca      3660
     gtccctgaac ccctcaaatt agagccagaa cacctgtcag ctctatcaga tctaaaacag      3720
     rctatcctgt ctgccccaga ttacaacaag ccatttactt tgtatgtaca tgagygaaga      3780
     ggggtagctt caggtgtttt aactcwgact ttggggcctt ctcagtgccc aattgcttat      3840
     tattctgccc aactggaccc agtagcatca ggagcaccac catgtcttag aggagtagct      3900
     gttacagcct tactagtgac aaaaactgtt gatctagtat taggatgccc attaacaatt      3960
     atgtgcccac atgaggtaga agcattattg ctaaggcata gaacacaggc attctctgat      4020
     cagcgaatta caaggtatga aataaccttg ttaaatagcg aaaacattac cttgaaacgc      4080
     tgtacaaccc ttaaccctgc caccttgctt ccagatttac caacttcagg agaaccatta      4140
     cacagttgtg aaacactagt gtccatggca gaaaagcctc aagataatct cttggacact      4200
     cccttagaca atccagatct ggtcttattt actagatggt tcctctttta tgagggatgg      4260
     catacgctac actggagctg ctatagtcac agaatttgcc actgagtggt cagcttcact      4320
     gccctctaat attagcactc aaggggcaga actcatagct ctgaaacatg cctgtataat      4380
     tgccaaggat aaaaaggcaa caatttatat ggattctaga tatgcttttg gcatttgtca      4440
     ctcagtcggg atgctatggc tccagagagg atttttaacc tcagctggaa aatctatagc      4500
     taatgcagaa attattaatg aagttctttc tgctctccag ctgcctgaag ccctagctgt      4560
     agttcattgc tctgcccata caggtggcac tgaccttgtc tctaggggaa atgattgagc      4620
     agatgccact gcaaagctag cagccataga agggcctgaa ttaattttaa cattaacaac      4680
     cactgatgac ttaaatttat cactttccta taatgaaaag gaagtggaaa aatggaagca      4740
     aaaattcaaa gcaaaacaga ttaatggagt atgggtgtca tctgaaggaa aacccctgct      4800
     ccctagaagt ttctatcacc aaatttgcca atctattcat aaaaatggtc actttggcac      4860
     ccagggcatc gtggactctg ttaagagagt atggatagcc cctggtataa ctactatagc      4920
     ctctaaagtg tgtacagcct gctctacctg ccaggcatat aaccaacatg cctttcatgg      4980
     caaagccttt ggtgggcatc ctctggctta cacacctttt gagtacctac agatagattt      5040
     cataacaatg ccaaaggctg gacattataa attttgtcta gtcatagtag atcaactgac      5100
     cagatggcca gaagcatttc ctgcgacccg agccacagtg gcttttgttg ctaaggtgct      5160
     tttaaaagaa attattcctc actttggcct gccagcacgt attgattcag atagaggaag      5220
     tcattttact gattctgtcc taaatcaaat atattcttgc ttagggataa ctcccaaatt      5280
     ccatgttcca tatcatcccc agagctcagg ccaagttgaa agaatgaata aagaacttaa      5340
     aactatgatt ggcaaattat gcactgagac acatttaaaa tggcctgaaa ttctccctct      5400
     ggccctattt tatcttagaa gcaggcctag aggagaccta cacatctcac catttgagat      5460
     gctttttgga catccaccta tacaggctaa gcctttctcc cctgcatata catcactatt      5520
     agggggagat actactattg cttcctatat acaggaatta cagcacaaac tacgtgaact      5580
     ccatgaatcc ggagctgcag tacaagccgg accactagac ttttcacttc acaacctgaa      5640
     cccaggagac aaagtgtata ttaagaattt ccagcgtact ggagcaactc agccttcctg      5700
     ggaagggcca ttccaaatat tgttaatwac tccagaagtt ttaaggaagg aaaagaaaca      5760
     ggatagaagt tttggatccc gcgaagggcg tgaacgagcc ggctttagag atgtaaataa      5820
     gagtcagtaa tcaattattg atattcggga gcccagccta ctccgaccac tacgttacta      5880
     ttcaggctat tccgatccaa tgatcccaat ttaacactgc actggtcaga ggataatgct      5940
     agctcagtag gaaaggagat tagaaactaa aggaggtaga taatgctagg tattagcatt      6000
     ggataagaga gagagacagg aaggcctgac cgaagcgcca ggcctcaggg agaaagatag      6060
     agacgagaga gaaagagaag agttgctcct ttgaaacctg gacgtcctcc aagtgcttga      6120
     gctggctgtg tcccgtttct tttactttga tatacaaatg agctcaatac atattgatca      6180
     attacatgat gcctcaataa tatggatgag ttacatagtg tattgccatt ggataattgc      6240
     aaattatgac aaggtgaagg tggggttatt atcctcaggt gagtgagaca ggaggaagca      6300
     aggcttcacg ccctaacctc agccacgggg aatagagccc attgccatgc gcagggtggc      6360
     catgtgctca ctcacaatcc ttgtctctcc ataatatatg gggactgcta catctaacta      6420
     ctccaacatc tataaagatt ggagaaaagg actcttggat tcattgctca catgtaaaga      6480
     gagcatcttc tgttgagact gattgactat atcctatcac attgcaytgg agataataat      6540
     ccattgacaa gtggatactg ttttcaggaa cacattgaat tcctgatttc cccccttatt      6600
     tttattattg ctttcctttt attttgatta gaatatttga ttttttcccc ttttctcatt      6660
     tcttgtactt aaggtacata caatcaatat taattttatt ctacaataat ataagtttaa      6720
     aatatatgta tatatacttg ctataatatt aatacatacc cagctttaaa ctgtgggaac      6780
     ctgacattta ttgataattg ttatgggact gtgattaatg tttgtgtctg attctaggaa      6840
     acaggatcaa aaaggagcac agacttaacc tgaatagtgc caaaagagca cacaggtcaa      6900
     aaaaaagaaa agaaaaaaac caatccaggt aggattagtg cacttctaag ccaatacaaa      6960
     ggatttgaac ctagtgtgag actcaaggtt gcaatgcttg acatatgtta agacataagc      7020
     cttccttgta tccacactct ttgtgaaaat acttacagac aagtaccaaa atttggctat      7080
     catcctggct ccctctatcc ctgagaatga aggaaaaatc agacgaggga atgacacttc      7140
     cctatcaaaa taaaattcta gttccttttc ttcttatagt atggcaactt cctgtagtct      7200
     tggctgcaaa tgggtaagtg aaatattact gcattctgtc ctacagactt gtgggataga      7260
     aattacttta aattggacct gtacaagggc ctattatgaa tttattcttg cttactcaac      7320
     attttatata catagatttt ggtattttga ttctgatttt gaattttttt tctttctccc      7380
     aaaagtttaa ctttcttcca ttttttcctt tatatttttt gttttgtttt tttgtttttg      7440
     ttgtttttca attcttttaa taattgactc atacacctcc ataactcaac catgcatcct      7500
     gagctgaact ggatgttttt taacacccac ttcagggggg ggttgtattt taataaaaat      7560
     ccaagatttt gaaatttttt gttcgagaaa gatcttcaag gaagaagctt gataactcct      7620
     aaatccagag aatgaactgt tgcagaaaga tgccagaaaa cctacactac atcaagaaga      7680
     tcaagaatga actttgggtg tggttgattg aactgaagtt tgattgaaca tttattgtaa      7740
     atgtacactt ttatgccaaa ggggactgcc cctaatttgg ctttttgtca atgcacctag      7800
     caaaacattg gttttgcttt ctctcttttc tattcctccc taactattgt aatttcctct      7860
     tagaaatcga atattgtata tatctgtagt tagaagtatt ttaggactac aagatgatta      7920
     tgttaaatga tcaatgggga gactagtctc ccaatgatca tcagggggga ttgtgaa         7977
//
ID   MARINERNA6_MD repbase; DNA   ; MAM   ; 198 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   27-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   MARINERNA6_MD; a probable non-autonomous Mariner element from
DE   opossum Monodelphis domestica.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; non-autonomous.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-198
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-198
RA   Gentles A., Jurka J.;
RT   "MARINERNA6_MD, a family of nonautonomous Mariner elements from
RT   M. domestica.";
RL   Direct Submission to Repbase Update (19-OCT-2005).
XX
CC   [2] (Consensus)
XX
CC   This sequence is probably a non-autonomous Mariner, based on 22
CC   bp terminal inverted repeats, and TA TSDs. It is 88% similar to
CC   the mammalian repeat URR. The consensus was reconstructed from
CC   the June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 198 BP; 56 A; 43 C; 37 G; 62 T; 0 other;
     gagcagtggt tctcaacctt tctaatgccg tgaccccgca atacagttcc tcatgttgca        60
     gtgaccccaa accaaaaaat tattttggtg gctacttcaa aactgtaatt ttgctacagt       120
     tatgattcgg aatgtaaata cctgatatgc attatgtatt ctcattgcta caaattgaga       180
     ggttgagaac cgctgctc                                                     198
//
ID   L2B         repbase; DNA   ; MAM   ; 419 BP.
XX
AC   .
XX
DT   22-AUG-2000 (Rel. 5.07, Created)
DT   22-AUG-2000 (Rel. 5.07, Last updated, Version 1)
XX
DE   3'-end of L2 (LINE2) repeat (subfamily b) - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L2 (LINE) family; L2B; LINE2B subfamily; Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-419
RA   Smit A.F.;
RT   "L2B..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Average divergence from consensus 30%.
XX
SQ   Sequence 419 BP; 61 A; 154 C; 88 G; 107 T; 9 other;
     tcccccttgc tcactctgct ccagccacac tggcctcctt gctgttcctc aaacacgcca        60
     ggctctttcc cgcctctggg cctttgcaca tgctgttcyc tctgcctgga acgcccttcc       120
     ccwctccttc ancctggcca actcctactc gtccttcagg kctcagctca ratgtcacct       180
     cctccaggaa gccttccctg acttcccagg ccgagttagg tgccctcctc tgggcccccc       240
     cggtcctacc ctgccactct gggttatmat tgtctgtkng cangtctgtc tcccccactg       300
     gactgtgagc tccgcgaggg cagggactgt gtctgtcttg ttcaccactg tatccccagc       360
     gcctagcaca gtgcctggca catagcaggc gctcagtaaa tgtttgttga atgaatgaa        419
//
ID   BTSAT3      repbase; DNA   ; MAM   ; 173 BP.
XX
AC   J00027;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine 1.706 g/ml satellite, 2350 bp repeat, segment C.
XX
KW   SAT; Satellite; Simple Repeat; BTSAT3; Repetitive sequence;
KW   Satellite repetitive element.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-173
RA   Pech M., Streeck E.R., Zachau G.H.;
RT   "Patchwork structure of a bovine satellite DNA.";
RL   Cell 18, 883-893 (1979).
XX
DR   GenBank; J00027; Positions       1     173.
XX
SQ   Sequence 173 BP; 45 A; 45 C; 38 G; 45 T; 0 other;
     ggcccgtcat gcagtgatca cgtggctatc atgcactact cacttggctg atcatgcaat        60
     gatcatgtag ctaccatgta caggtcatgt gaatgatcat acacccatca ggtgactgat       120
     catgcactga tcacgtggct atcatgcact gatcacgaga ctgatcatgc act              173
//
ID   SINEC2A2_CF repbase; DNA   ; MAM   ; 143 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Young dog SINE element SINEC2A2_CF.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   SINEC2A2_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-143
RA   Jurka J., Gentles A.;
RT   "Young dog SINE element SINEC2A2_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 93%. This sequence, and
CC   SINEC2A1, supersede previous SINEC2_CF.
XX
SQ   Sequence 143 BP; 13 A; 51 C; 44 G; 35 T; 0 other;
     gggatccctg ggtggcgcag cggtttggcg cctgcctttg gcccagggcg cgatcctgga        60
     gacccgggat cgaatcccac atcgggctcc cggtgcatgg agcctgcttc tccctctgcc       120
     tgtgtctctg cctctctctc tct                                               143
//
ID   BDDF2       repbase; DNA   ; MAM   ; 3806 BP.
XX
AC   Z25531;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   BDDF repeat unit containing internal inverted sequences.
XX
KW   BDDF2; BTBDDF2; Repeat region.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-3806
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Evidence for homological recombination with participation of the
RT   bovine alu-like sequences.";
RL   Unpublished.
XX
RN   [2]
RP   1-3806
RA   Plucienniczak A.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (12-AUG-1993).
RL   PLUCIENNICZAK A., PP TERPOL, LABORATORY OF GENETIC ENGINEERING,
RL   P.O.W. 57, SIERADZ, POLAND, 98-200.
XX
DR   GenBank; Z25531; Positions     484    4289.
XX
SQ   Sequence 3806 BP; 1028 A; 816 C; 888 G; 1074 T; 0 other;
     ccgactgagt gacttcactt tcacttttca ctttcatgca ttggagaagg aaatggcaat        60
     ccactccagt tttcttgcct ccagaatcgg gaggggggga cctggtgggc tgccatctat       120
     ggggtcgccc agagtcggag agaactgcag cgaagcagca gcagcagcag cagggttagt       180
     tgatcgctga ggaagccttt cttatctctc cttgctattc tttggaactc tgcattcaga       240
     tgcttatatc tttccttttc tcctttgctt ttcacttctt ttcacagcta tttataaggc       300
     ctctcagaca gccattttgc ttttttgcat ttcttttaca tggggatggt cttgatccct       360
     gtctcctgta caatcacaaa cttccgtcca tagttcatca ggcactttgt ctagcagata       420
     tagtccctta aatctatttc ttccactgta taatcacaag gggtttgatt taggtcatac       480
     ctgaatggtc tagtggtttt ccctacttca atttaagtct gactttggca atacggagtt       540
     catgatctga gccacagtca gcttctggtc ttgtttgctg actgtataga gcttctccat       600
     ctttggctgc aaagaatata atcaacctga tttcggtgtt gccatctggt gaagtccatg       660
     tgtagagtct tcttttgtgt tgttggaaga gggtgtttgc tatgaccagt gcattctctt       720
     ggcaaaactc tattgatctt tgccctgctt cattctgtat gccaaggcta aatttgcctg       780
     ttaccccagg tgtttcttga cttcctactt ttgcattcca gtcccctata atgaaaagga       840
     catctttttt gggtgttagt tctaaaaggc ttgtagattt tcatagaact gttcaacttc       900
     agcttcttta gcgttactgg ttggggtgta ggcttggatt actgtgatat tgaatggttt       960
     gccttggaaa cgaacagaga tcattctgtc gtttttgaga ttgcatccaa gtactgcatt      1020
     tcggactctt gttgaccatg atggctactc catttcttct gagggattcc tgcccgcagc      1080
     agtagatata atggtcatct gagttaaatt cacccattcc agtccatttg agttctctat      1140
     tcctagaatg tcaacgttca ctcttgccag ctcctgtttg accacttcca atttgccttg      1200
     attcatggac ctgacattcc aggttccttt gcaatattgc tctaaacagc gttggacctt      1260
     gcttatatca cgcttcacag ccagaactgg gtattgctaa tgctttggct ccatcctttc      1320
     actcaatctg gaattatttc tgctgtgatc tccagaacga tcttaagcac ctatcgacct      1380
     ggggagttcc tagttgagta tcctatcatt ttgccatttc atgtgttcta gaggttctca      1440
     aggcaagttt agtgaagtgg tttgggattc caatttccag tggaccacat tctgttagac      1500
     ctggggtcca ggacccatct gtcttgggtg gcgctaaaag gcatggctta gccaggttga      1560
     gttaatcacg gcactggtcc gtgtgatcaa attggctaga ggattctgtg attatttcca      1620
     gtgtctggtg ccctcggatg acccctcgca acacccagtc ttgggttttc ttttatcttg      1680
     gacatggggt atctcttcac ggctgctcca gcaaagtgca gccactgctc cttaccttgg      1740
     acaaatcgcc cctcctaacc ttgaacatgg ggttgctcct cttgtccacc acccctggcc      1800
     tcagacgtgg ggtagctctt cttgttcgcc gcccctgaac tcggacgtgg gttagctcct      1860
     cttggccacc acccctgacc tcagatttgg gtagctcgcc ttggctactg ctactgacct      1920
     tagatgtggg gtagctcctc tcggccactg cccctgacct tggatgtggg gtagctcctc      1980
     tcgggcgcac ttgtgctatc gcagcctgat gcagagttcc aaagaatagc aaggagagat      2040
     aagaaagcct tcctcagcaa tcaatgcaaa gacatagaga aaaacaacag aatgggaaag      2100
     actagagatc tcttaaagaa aattagagat accaagggaa catttcatgc aaagatgggc      2160
     ttgataaagg acagaaatgg tatggaccta acagaagctg agatattaag aagaggtggc      2220
     aagaatacac agaagaactg tacaaaaaag atcttcacaa ccaagataat cacgatggtg      2280
     tgatcactca cttatagcca gacatcctgg aatgtgaagt taagagggcc gtagaaagca      2340
     tcactatgaa caaagctagt ggaggtgatg gaattccagt ggagctattt caaatcctga      2400
     aagatgatgc tttgaaagtc ctgcactcaa tatgccagca agtttggaaa actcagcagt      2460
     ggccacagga ctggaaaagg tcagttttca aactaatccc agagaaaggt aatgccaaag      2520
     aatcatcaaa ctaccacaca attgcactca tctcacacgc tagtaaagta atgctcaaaa      2580
     ttctccaagc caggcttcag caatatgtga actctgaact tcctgatgtt caagctggtt      2640
     ttagaaaaag cagaggaacc agagatcaaa ttgcccaaca tctgctggat catggaaaaa      2700
     gcaagagatt tccagaaaaa catctatttc tgctttattg actatgccaa agcctttgac      2760
     tgtgtggatc acaacaaact gtggaaaatt ctgaaagagg tgggaataac cagaacacct      2820
     gaccatgctc tttgagaaac ctgtatacag gtcaggaagc aacagttaga actggacatg      2880
     gaacaacaga ctggttcgaa ataggaaaag gagtatgtca aggctgtata ttgtcaccct      2940
     gtttatttaa cttatatgca gagtacatca tgagaagagc tggactggaa gaaacacaag      3000
     ccggaatcaa gattgccggg agaaatatca ataacctcag atatgcagat gacaccaccc      3060
     ttatggcaga aagtaaagag gaactaaaaa gcctcttgat gaaagtgaaa gaggagagtg      3120
     aaaaagttgg cttcaagctc aacattcaga aaatgaagat catagcaacc ggtcccctca      3180
     cttcatggga aaaaatagat ggggaaacag tggaaacagt gtcagacttt atttttctgg      3240
     gctcaaaaat cactgcagga tggtgactgc agccatgaaa ttaaaagaca cttactcctt      3300
     tggaaggaaa gttatgacca acctagatag catattgaaa agcagagaca ttactttgcc      3360
     aacaaggtca aggctatggt ttttccagtt gtgttgtacg gatgtgagag ttggactatg      3420
     aagaaagctg agtgccgaag aattgatgct tttgaactgt ggtgttggag aagactcttg      3480
     agagtccctt ggactgcaag gagatccaac cagtccattc taaaggagat cagtcctggg      3540
     tgttcattgg aaggactgat gctgaagctg aaactgcagt actttagcca cctcatgaga      3600
     aaatatgacc tcattggtaa agactctgat gctgggaggg atattttttg ggggcaggag      3660
     gggacgatag aggatgagat ggctggatgg catcactcac tcgatggcat tgtttgacgg      3720
     tgaactctgg gagttggtga tggacaggcg cctggaaagc tgtgattcat ggggtcacaa      3780
     agagtcagac gcgactgggt gactga                                           3806
//
ID   C_OC        repbase; DNA   ; MAM   ; 1965 BP.
XX
AC   M63140;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Rabbit C repetitive sequence.
XX
KW   C_OC; OCC; Repetitive element.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RA   Krane E.D., Clark G.A., Cheng F.J., Hardison C.R.;
RT   "Subfamily relationships and clustering of rabbit C repeats.";
RL   Mol. Biol. Evol 8, 1-30 (1991).
XX
DR   GenBank; M63140; Positions       1    1965.
XX
SQ   Sequence 1965 BP; 452 A; 572 C; 529 G; 412 T; 0 other;
     cccctggttg gccctggctt cctgagtcct gcaggctggc caggagcttg ctgtgtgccc        60
     aggcctctgg catctccctc gtcgcacggc tggcaccctg gaactggccc ctgtcctagt       120
     cagacgcgcc cagactcctg ctgaagtgcc atggaggcac catcgggcgt ccagcctggc       180
     ccaaccccag cacaagcctg gcacagccct cgtagcactc tgggcagtgt caggccctgg       240
     cactgttctc tgccatggcc ccggctgacg cgttggcagc tcccattccc accaccaact       300
     ccccctgcac agccccatcc atcttcactc aatatagaaa aacatatgaa gaaataacca       360
     ggggcccgag ctgcaggctc actaggctaa tcctctgctt agcagggacg ttagattcat       420
     gtcccgggtg cccctcttcc atcccagctc tctgctgtgg cccaggagcg cagtggagaa       480
     tggcccaggt cctggggccc tgcacccaca tgggaggcct gcaggaggca tctgactgtt       540
     ggcttcggat cagtgcagca caccggccgt agcggcactt gggggtgaac caacagaaat       600
     ggaagacctt tctctctctc tctctcatga actctgcccg tccaaaaaag aaaaaaaaag       660
     aaaaaaaaaa aaaagaaaga aagaaacaaa gaaataacca ggggtgggtg ttggcacagt       720
     gagaatcgca cacccacatc cctgagtgcc gtggttcttg tcctcggtcc attgcgtcga       780
     gatccatttc ttcgcaatcg accctggaag aggaggatga tccaaggact tgggttcctg       840
     acaggcactg gagacactgg ctcccggctt aggccagcac agcagctgga gctgttgcag       900
     ctctttggga aatgaaccag tgggtgggag tgctacctcc cttactctct tctctctgcc       960
     tttcaaatac agaaacatct tgagaagaga gagacagaga caggatgcag gcttgtgtgg      1020
     cccctgatga agcgcccttg ggaggcctgc atgtcgtacc agagtgcccg ttgaagccct      1080
     gctgcttccc tccctcagct ccctgggatg cagtgggtga cgacccctgc acttagggcc      1140
     ctgccaccca ggtgcgaccc ggatggagtt cctcctgttg cccagctcag cccagtgaaa      1200
     gcatatgggg agtgaagtag cagatgggag accaatccga ggacttccct atctttgtgt      1260
     cactctgcct ttcaaatcag tacataaata aatcattaag aaccaaacaa aaatgaagag      1320
     gaattttttt ctgatttatt tgagaggcag aataatagag aggaagagtc agagagacag      1380
     agatcttcca cctgctggtt cactccccaa aaggctgcaa tggccagagc tgggcctgtt      1440
     tggagccagg agccaggagc ttcttctggg tctcccacat gggaggaggg ctccaaacac      1500
     ttgggctgtc ttccactgct ttcccaggca cattagcaga gagctggacc agagcagagc      1560
     agcaaggacc agaactggtg cccctatggg atgccacagc tgcaggtggc agctttaccc      1620
     acagggcaac agatccagcc cacatcaaat tttcaaatga gcacagcatg gggttgctgt      1680
     catggcacag ggccctgtgc ttagccgcct gcacctgcat caaactgagt ccctggcagc      1740
     tccacctctg accagctcca tgctaccagc ctgggaaagg catggggagg tggccccaag      1800
     tgtttgggag acctgggtgg agcccctgct cctggcttca gcctgggtca gctaaggcct      1860
     ttgtggcagc agagctgtgg gccggcagat ggaggagctc tctcttctgt ctctgcctct      1920
     ctcttggagt ctttcactaa tgataaataa tttcagcaaa cactt                      1965
//
ID   NLA         repbase; DNA   ; MAM   ; 230 BP.
XX
AC   M57436;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Goat Nla repeat.
XX
KW   NLA; Nla repeat.
XX
OS   Capra hircus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Caprinae; Capra.
XX
RN   [1]
RP   1-230
RA   Li Q., Zhou B., Powers A.P., Enver T., Stamatoyannopoulos G.;
RT   "Primary structure of the goat beta-globin locus control
RT   region.";
RL   Genomics 9, 488-499 (1991).
XX
RN   [2]
RA   Li Q., Zhou B., Powers A.P., Enver T., Stamatoyannopoulos G.;
RT   "Beta globin locus activation region: Conservation of
RT   organization, structure and function.";
RL   Proc. Natl. Acad. Sci. U.S.A 87, 8207-8211 (1990).
XX
DR   GenBank; M57436; Positions    9657    9886.
XX
SQ   Sequence 230 BP; 69 A; 58 C; 60 G; 43 T; 0 other;
     ttggggcttc ccatgtggta ctagaggtaa aagaacccac cttcaataca ggagacttaa        60
     gagatacgca ttctgtcccc aggtggggaa gattccccca gaggagggca tggcaactca       120
     gccaagtatt cttgcctgga gaatcccatg gacagaggag ccaggcggct acagtccata       180
     gagtctcata gactcagaca tgactaaagc aacttagcaa ggcacagcac                  230
//
ID   MER58D      repbase; DNA   ; MAM   ; 386 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   hAT DNA transposon from placental mammals.
XX
KW   hAT; DNA transposon; Interspersed Repeat; CHESHIRE; MER58D.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-386
RA   Smit A.F.;
RT   "MER58D - hAT DNA transposon from placental mammals..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   22% div.
XX
SQ   Sequence 386 BP; 114 A; 86 C; 63 G; 123 T; 0 other;
     caggggtcgg caaactacgg cccgcgggcc aaatccggcc cgccgcctgt ttttgtacgg        60
     cccgcgagct aagaatggtt ttaacagatg aacatttgca atcgatttcg atgataggga       120
     acactaactt tgaaccccaa ttaagcaaaa tgttatctcc ccaaaaagaa ttccattctt       180
     ctcattagta gacctgtatt acaaaaaatt gtactcaatt attattatta ttatattttg       240
     aatttcatca ataaaaattt tgtggaaatt tgttttctct cttgttatat aagtacctac       300
     ataatatcct cgattttgcc tcttggcccg caaagcctaa aatatttact atctggccct       360
     ttacagaaaa agtttgccga cccctg                                            386
//
ID   ERV5_MD_I   repbase; DNA   ; MAM   ; 6480 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV5_MD, a class 2 endogenous retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERV5_MD_I;
KW   integrase; reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-6480
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-6480
RA   Gentles A., Jurka J.;
RT   "ERV5_MD, a class 2 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 383-383 (2005).
XX
CC   [2] (Consensus)
XX
CC   Copies of this consensus average 96-97% similarity to it,
CC   indicating that this is another element that may have been active
CC   relatively recently. ORFs were not as readily reconstructed, with
CC   frequent stop codons. The corresponding LTR is deposited as
CC   ERV5_MD_LTR. This consensus was reconstructed from the June 2005
CC   release of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV5_MD_I_1p"
FT                 /translation="SIGNYLAKIPFSHCSRKDSKNKSRTLSRGSVICNICY
FT                 ASKIQLRKDCFNTLNDYQKLLGDINWVRQYSFLTTTELQPLFKILEGSSDL
FT                 NSPGTLTPEASLALEIVEDKLNQAPLNHYQPQLAVEVTIFATLMLPTGALT
FT                 EKQRVIEWLHLKSKMGKALQSYDCLMAQLIWKGIEHVVSGLGRYPHEIQVP
FT                 IAKDILQKYLQSHDEWSLLLVYPIAITTYTPQGLFSFLSQHPIVFPNILRD
FT                 RPVSGPNVYVDANANYKAGVYKEGSSPVIFTTPYSSTQQNELTAVLLAFWL
FT                 FQEPFNLIMDSKYVFQSLQGIEQAVIRSTQSNVQMLFCKLQTVIQRTHPVY
FT                 VMHVRSHTNLPGPIFKGNDIIDQALIAQCYLTDMQLAEESHHRFHQNSTAL
FT                 CKMFQLTKDQARSIVKKCPNCVPNHPPMHIAVNPRGLNSTDIWQMDVTHEP
FT                 SFGRLKYIHVTVDTYSGFLWASCLMGERTSHVINHCLMTFEMAGPPRTFKT
FT                 DNGPAYTSKQFFLFCQTWGIQHLTGIPHNPQGQTIVEHSNQILKNISFKTK
FT                 RGRQHPTSMIGNSCIYYK"
FT   CDS           0..0
FT                 /product="ERV5_MD_I_2p"
FT                 /translation="REGQGEDAGSLARRLDNDLHKILTLLLLFQNLSTATG
FT                 IKRWVFGEQPPWVEYVSMGHALPEVILYTKTNSDIPGIYHFERQAKDNNQA
FT                 NNLFVPFNWTGLVEAPPVCLARDHPACLPLRSLQAHYYGHPDLSDSFWIGP
FT                 YRVDKGVKYEDYGQLQYLGWLGESCDSIWGQERPICPYVMGYEQRDTVNMF
FT                 LPLLSCRSKRASCIHWKNMIWVYWHNDTRCIGKKLDSYKFHDCFIGGYSSP
FT                 LWVMPPELIGYILLISHRF"
XX
SQ   Sequence 6480 BP; 2079 A; 1154 C; 1254 G; 1991 T; 2 other;
     aatggctgcc cggacaggga ctttcattcg taaccccgat tcctttgctg gtcataggat        60
     gacgaagagt taacagcttt tgccccgaga ctgcagctcg gatgggcaga agaatcgaac       120
     agagagagtg cagtatttgt gggcctcctc tgttccccaa ctttttctct ctctctttcg       180
     ctttttagtt taaactgtcc cctattaggg acccccttcc ccccattctt ttcttttatt       240
     ggaaccctcc cttcggttct ctttggagaa cccccgacgc tgtgtgctgg tcatgcaaag       300
     agtttcgatg ctacggagat cccctcggtg gtgagtatac gagatactct aagggtgaga       360
     gggaaattat attttttctt tagaatggat cctaaaacac tgattttttc ctttcaaagc       420
     atgcttgtca caatgttgtg tgtttctgtt tatcgttgtc tttgtcaaag tctcgtctct       480
     atgtattctt aaattggaca ctcacaaaaa gaaagaatat aaaatgggat agttgcaaga       540
     ttgaacttgt ctgtcaaaaa tcctcagcag aggacaaaag caaatacctg ttcaatgatt       600
     ttttcctctt tcttcctttg gatgggcccc caaaggagcg aaaaagagaa aaattcagag       660
     cagaaaaagg gagattttta ctccacaatt agaggctatt tttcacttaa gattaatcct       720
     atggtttgat gtatgcaatt tgggaggatt gttaatgatt ttgatatgat ccaaatataa       780
     tttcgtgtat tatggtaact atttgtcagt taaatgtgaa atgttaacca gattttattg       840
     agcacaacaa aactcatggt tagaagtttg ttttgttaaa tcttgctatg cataatggtt       900
     tcagtgaatt tgagaattgt ctaaatgtgg ctgatagcca gactgacaca gagagggaat       960
     attttattct ataaggacaa aaaattgcac tggctacttt atagatgtaa aagtcatcca      1020
     gaaaaagttg ttatgttgtt gagaagaact tattctagaa attaaatttg ggattttttc      1080
     aaatcagatt tattttaatg catgtgctgt caggaatagt aacaagaaat catatgacac      1140
     acaagaagtt tttaaagtga ttaatctgtt catggaattt aataatacta gtactaagaa      1200
     tttggtattt tgcaagagag aatttctaaa tgatgttgtc tttgatcaag gttatatgaa      1260
     ttgtttttaa aatgtgtaaa atgcatagga aggaatttgt aatctagaga tgaacatgta      1320
     tgtattcaga taccaaatgc tggaaattag tgatgctgag tgaatacaga atatgtatgc      1380
     atttgtatta tgaagagaat taagttttcc acctaaatag gttaagggta tatgatatgc      1440
     aaactgtatg tccttaacaa gacaaattta accagccctg aaatcaagag ggcttgtcat      1500
     gaagattgaa tacaattcca tatagtgcct ttcctctact tacaataatg gtaaagaggg      1560
     gaagccagaa gaaataatga agtagtccca ataagagaaa ataattaatt gaagtagata      1620
     aaggggattt atcccttcct aagttttttt ttaggaaaca gacccagccc cctccccctc      1680
     aggaggtcaa acagtttttg caggctgcaa aaaaagactc taattagctg aaggataaga      1740
     attaggaagg tcaggtaaca aaaggaactt caggaatatc aaagaggtcc ggctggaatg      1800
     ccaggtaaca tatagctaac tagggatgtg attaagtaac tgtgaaagta accagccyct      1860
     gaggacaaac ctaaggatct ctgacctcac ataactatgt ttgtgataag gtttgtttga      1920
     ttgtcaaata agaatcttta tgtgaaggga aataacttta tatcttataa cctatctata      1980
     taagtttata attgaatttg ggggtgtctg gattcgtttt atgaagtgct ccactgcaat      2040
     aagagtaatg aatagagata ctaactgata ttcttaaatt ctagtatgaa atagatataa      2100
     caaattgtaa taatgttgat ggaatttaat caggaatata gcaatatttt gagctaaaag      2160
     aaaactaaac tgtaggtttt attctacttt agacagaagt tttagaggag tgcacgtaaa      2220
     tgctttgtac ttcagtttgg ttacacactg aaacattgct aaaggactta atcaaagtta      2280
     tttgggagtt gtggagttca aactaaaatc cactgagagt aaattattat gaaagaggtt      2340
     tgataaattc aatattttaa attatagtaa gctcacttgt taaagaagga tgggacaagg      2400
     ctgttaagta ataaatctaa attgagccaa ggagccttag gataaattgc tcagaagcta      2460
     ttaacccctt ccttgcacac aggaaggaga aagaagtgct tataattatt ccacactgat      2520
     acttaggaac tgaaataggg acctcaaaga gttaacaacc actgtgtgat agaacttaag      2580
     ataagtgtat tttaattgta gattcagagg ttttaagatg ctcaaacaaa caaactttgc      2640
     caggccctgt ctgaccaagt agcttgtttg aagctgtgga attttagtgc aaacattcca      2700
     tgtccagaat gataagatta ttcagccaac aatatgtagc ttcagccctt cattctgtaa      2760
     gactacactt tcctgctctg tacatcatcc attatatgga tgatattctt atcgcggctg      2820
     aagatgaatc ccaaataagc aagtgctatc tatagtcaat tggaaattac cttgcaaaaa      2880
     taccatttag tcattgctca agaaaagatt caaaaaacaa gtcccgtact ctatctaggg      2940
     gctcagttat atgcaacatc tgttatgcct caaaaataca attaagaaag gactgcttta      3000
     ataccttaaa tgattatcag aaattgttag gtgatatcaa ttgggttagg caatattcat      3060
     ttcttactac aactgaatta caacctttat tcaaaatact ggaagggagt tctgatttga      3120
     attcccctgg aactttgaca cctgaggcct ctcttgcttt agagatagta gaagacaaat      3180
     tgaatcaggc tccacttaac cattatcagc ctcaattagc cgtggaagtg actatttttg      3240
     caactttaat gttaccaaca ggtgccttaa ctgagaaaca aagagtcatt gaatggttac      3300
     atctaaaaag caaaatggga aaggctttac agagttatga ctgtcttatg gctcaattaa      3360
     tatggaaagg catagaacat gtggtctcag gtttaggacg gtatcctcat gaaatccagg      3420
     tacccattgc taaagatata ctacagaaat atttacaaag tcatgacgaa tggtctttac      3480
     tattagtata ccccattgct attaccacct acactccaca aggcttattt tcttttttgt      3540
     cacaacatcc tattgttttt cctaatattc taagagatcg tccggtatca ggacctaatg      3600
     tttatgttga tgcaaatgct aattacaagg caggagtata caaggaaggt agctcacctg      3660
     tcatttttac cactccttat tcttctaccc aacaaaatga attaacagct gttttactag      3720
     ctttttggtt atttcaggag cctttcaacc ttataatgga ctctaaatat gtttttcagt      3780
     ctttgcaggg tatagaacaa gctgtcatca gatctactca aagcaatgta caaatgttat      3840
     tctgtaaatt acaaactgtc atatgacaaa ggacacatcc agtatatgtc atgcatgtac      3900
     gcagtcatac caatctgcct ggacctattt ttaaaggaaa tgatatcata gatcaagctt      3960
     tgattgctca atgttatcta actgatatgc aattagctga ggaatcacat catagatttc      4020
     accaaaatag tactgcttta tgcaaaatgt tccaactcac taaagatcaa gccagaagta      4080
     ttgttaaaaa gtgtcctaat tgtgttccaa accacccccc aatgcatatt gctgtgaatc      4140
     ccagaggctt aaatagtaca gatatatggc aaatggatgt gacccatgaa ccgtcctttg      4200
     gacgacttaa atatatccat gtcactgtgg atacttattc aggattttta tgggcttcct      4260
     gcttgatggg agaaagaact tctcatgtta ttaatcactg cttaatgact tttgagatgg      4320
     ctggtccccc cagaacattt aaaacagata atggacctgc ttatacttcc aaacaatttt      4380
     ttcttttttg ccaaacttgg ggtattcaac acctcacagg tatcccacac aatccacaag      4440
     gacaaactat tgtggagcac agtaatcaga tcttaaaaaa catttctttt aaaacaaaaa      4500
     gggggagaca gcaccccaca tcgatgattg gcaatagctg tatatactat aaataatttg      4560
     atctttactt ccaataatat atccagagct gaaaaatttt tctctgcatt ttcttatgaa      4620
     tgaaattcag gtaccaccac tcctgtgctc cctgccccag aacaaaaatt tggcatgtgg      4680
     aaagatgata atcaaacttg gcaagaggca aggaccaccc agtggtcctg caaggccgag      4740
     gttttgtttg tgtctccaca ggtaaagaca gagtatggct ccctccccgc tgagttcgag      4800
     aaattgacca taaagagaag gacaaggaga ggacgcagga agcctcgcaa ggagacttga      4860
     caacgatctc cataagatac tgactcttct gcttctattc cagaatttaa gtacagctac      4920
     tggaataaag agatgggtct ttggggaaca accaccttgg gtagagtatg tcagcatggg      4980
     acacgcttta ccagaagtca tcttatatac aaaaactaac tctgatattc ctggcattta      5040
     ccattttgag agacaagcta aggacaacaa tcaggccaac aatttgtttg tgcctttcaa      5100
     ttggactgga ctagttgagg cacccccagt gtgcctcgca cgagaccatc ctgcatgcct      5160
     gcccctcaga tctctgcagg cgcattatta tggtcatcct gacctgtcag actctttctg      5220
     gataggacct tatcgtgtag acaaaggggt aaaatatgaa gattatggcc aactgcaata      5280
     tctaggttgg ctaggggaat cttgtgatag tatttgggga caagaaagac ctatttgtcc      5340
     atatgtgatg ggatatgaac aaagagacac tgttaatatg tttctgccct tgctgtcatg      5400
     tagatctaaa agggcatcat gtattcattg gaaaaatatg atttgggtgt attggcataa      5460
     cgacacaagg tgtattggaa agaaactgga ttcttataaa tttcatgatt gttttatagg      5520
     aggatacagc tcgcctttgt gggtgatgcc cccagagcta attggttaca ttctgctaat      5580
     ttcacacaga ttttgactga ttatggaaag atagccctgg cattggataa agtaaatatg      5640
     tctcattatg ttaatgttac ttataatgga aaagtccaaa aaccagtaaa tagaagtgtt      5700
     acattagaca ttcaagstag acactcaggg ggatggtatc actcaccggc agatagagca      5760
     atggaaaaat tgtctcaact aatcagccct aggaaaagaa gatgtatttc ttgcttagtt      5820
     ttaggaattg tagcccttat agccgccata acagctacaa ctgtcagtag tgtttctcta      5880
     gcacaaagtg tagctaatgt acggaccctg gaacatgatg cagaatactt acatgggcta      5940
     gcacagaatg taacccaggt tttgcactta cagcaagata ttaatacaag ggttttttat      6000
     gctttacaac aaatatctaa agatgtattg ttattaacca atcaagtaga aattttagct      6060
     atcaagggta aattaaggtg tgattatcgc tattcagcct tttgcctcct tcctgttaaa      6120
     gctaacacgt ctgatgcatt tgaagaaatt agaaatgatt tacaaggtct ttggttaaaa      6180
     agtaacatct cagaggatat ccaacaattg aaccatatca ttgatgagat ggataactct      6240
     ttagctgagg accttcgtcc cgaacatatt gctgattcct tatacaattg gattaaatca      6300
     ggccaaagtt ggctatctcc tttagctcaa atgagtataa ccatattgac tttcatactg      6360
     ttcatagtta tcttagtggt ccttcttccc tgtctgttcc aactcctttt gtccagcttg      6420
     ggcaaaattg gccggatctt ggctctccac agaattcttt tgcaaaacaa atagggggaa      6480
//
ID   MER47C      repbase; DNA   ; MAM   ; 97 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner DNA transposon from placental mammals.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MER47C; TIGGER5A.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-97
RA   Smit A.F.;
RT   "MER47C - Mariner DNA transposon from placental mammals..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   (Tigger5)  17%.
XX
SQ   Sequence 97 BP; 21 A; 24 C; 25 G; 27 T; 0 other;
     cagacggtcc ccgacttacg atggttcgac ttacgatttt tcgactttac gatgggttta        60
     tcgggacgta accccatcgt aagtcgagga gcatctg                                 97
//
ID   MSTC        repbase; DNA   ; MAM   ; 428 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Long terminal repeat (MSTC subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MSTC;
KW   retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
RN   [2]
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   LTR of MSTC retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 17%. Intermittant subfamily
CC   between MSTB1 and MSTD; 75% similar to MSTB1 over the entire
CC   length.
XX
SQ   Sequence 428 BP; 114 A; 97 C; 104 G; 113 T; 0 other;
     tgctatggtt tgaatgtttg tcccctccaa aactcatgtt gaaacttaat ccccaatgtg        60
     gcagtattga gaggtggggc ctttaagagg tgattgggtc atgagggctc tgccctcatg       120
     aatggattaa tccattcatg gattaatgga ttaatggatt aatgggttat catgggagtg       180
     ggactggtgg ctttataaga agaggaagag agacctgagc tagcatgctc agccccctcg       240
     ccatgtgatg ccctgcgcca ccttgggact ctgcagagag tccccaccag caagaaggcc       300
     ctcaccagat gcggcccctc gaccttggac ttcccagcct ccagaactgt aagaaataaa       360
     tttcttttct ttataaatta cccagtctca ggtattctgt tataagcaac agaaaatgga       420
     ctaagaca                                                                428
//
ID   MARINERNA7_MD repbase; DNA   ; MAM   ; 930 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   MARINERNA7_MD; a probable non-autonomous Mariner element from
DE   opossum Monodelphis domestica.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; non-autonomous.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-930
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-930
RA   Gentles A., Jurka J.;
RT   "MARINERNA7_MD, a family of nonautonomous Mariner elements from
RT   M. domestica.";
RL   Repbase Reports 5(10), 325-325 (2005).
XX
CC   [2] (Consensus)
XX
CC   This sequence is probably a non-autonomous Mariner. 20 bp
CC   terminal inverted repeats, and TA TSDs. Average similarilty to
CC   the consensus is ~86%. The consensus was reconstructed from the
CC   June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 930 BP; 294 A; 160 C; 195 G; 278 T; 3 other;
     tacagtcaaa ccttggtact caatggtttt agaactcatc gaatttggta tttgatgcat        60
     tttgatgaga aaaaattgtc gtggtattca acatttgctt ggcactygac gtgcttgcta       120
     gaacttgttg gcatcragat cttgggaagc atatgcctrc tccagctgaa acaaaggatc       180
     atgtgttagt tcaggagcat aaagaagagc tcaacactga ggagctgcag gaacttcaaa       240
     gggagcagca acagctagtg gcgggggagt tttcttcagg tgaggaggag gcaaaggagg       300
     atgtccccac ttcattaatc aaggaaatgt gtgcaaaatg ggtggaagtg caaaactttg       360
     ttgaaaaata tcaccctgat aaagctttaa caagcagaat tgtaaatttg ttaaatgacc       420
     agaccatttc ccactttaga ggaattttga aatgcagaca aaaacaaaca tcattggata       480
     ggtttcttgt gaagcttaca cctggtgaat ctcaagcagg gttcagtggt gataagggac       540
     agaaaagaga aagagaaaga actccagaag ggcagttgcc ctcagatatt atggaagggg       600
     actcctcttc cagacaataa catttctcct ccccaccatc cccttaggcc atgaactcct       660
     ctcaatacag gtaaagttaa gttaaaatta ttttatttaa tctaattatt gtttttattt       720
     atgtctatgt attattaatg tttatttagt aaaatacaac tccattaatg catataatgc       780
     cttataaaat ctgggttttc tgggtgtctg gaatggatta attcaattta cattattcct       840
     tatgggaaaa attcatttgg tactcaacct ttttggtact caacctgcct tctggaatga       900
     attaatgatg agtaccaagg taccactgta                                        930
//
ID   ERV10_MD_LTR repbase; DNA   ; MAM   ; 337 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV10_MD, class 1 ERV from Monodelphis domestica - consensus of
DE   LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV10_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-337
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-337
RA   Gentles A., Jurka J.;
RT   "ERV10_MD class 1 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 346-346 (2005).
XX
CC   [2] (Consensus)
XX
CC   The corresponding internal sequence is deposited as ERV10_MD_I.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
SQ   Sequence 337 BP; 79 A; 104 C; 67 G; 87 T; 0 other;
     tgaaagggaa ctaggccaac gaacccggtg tagataagca cccttcctag gccaacgtac        60
     cctgtgtgat aaccacctta acctacccac cctgtgtgat aaacaccttg acctccccac       120
     cctgtgtgat aaccaccttg acccctccac cctgtgtgat aaccatattg acccttggta       180
     agctccatgg gtatataagc ctgccttaaa atttgcttcg gggaggacct gccttgggct       240
     cctccctacg cgtgtgaagt gtgttacaat aaactacctc tctgtgctga ttgcatcgtc       300
     tgttctgttc ctttggaccc ctaaacggac cctaaca                                337
//
ID   CarLTR9_LTR repbase; DNA   ; MAM   ; 563 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-563
RA   Smit A.F.;
RT   "CarLTR9_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   family-2556 ( 7 elements )  12-13% subst; 4 bp TSD; family-89
CC   distant.
XX
SQ   Sequence 563 BP; 173 A; 150 C; 116 G; 122 T; 2 other;
     tgttaggagt tagttggaca gttaggtagt cagggccagg gtccccaaca agaaaatatg        60
     gagtcaggac agctaaaata aaacagcact gacatcctgt tttgcagctt agacaggacc       120
     acactagcat tctgctttgc agcctttgca gaaatgactt ctgcaaaacg tcctaaaata       180
     agacaattaa ccacaaagca tttgtcanta tcacgggcaa ggggcagtta agacataagc       240
     ccccagatgt cagcaaaaaa agaccatcag cacgtggaca ttaacctaat aggtagacag       300
     atacgtgacc aaagccctga ttggcacgac tcagcacacc ctgattgctt aagatagttc       360
     cgcaaaagag ctcataaaaa cccctaaact tagaaactcc gagggcaacc ctctcgggcc       420
     cccctccctc tccgggagct ttatactctt gctcaataaa ctttgctttg ctgcccacca       480
     ctcttcgtct ggtctacctc ttcattcttc gaagcggcgt gaccaagaac cgcgggcact       540
     aagggnacag aaatcctgca aca                                               563
//
ID   ES22        repbase; DNA   ; MAM   ; 471 BP.
XX
AC   .
XX
DT   27-NOV-2001 (Rel. 6.1, Created)
DT   27-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Equus caballus satellite ES22 sequence - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; ES22; satellite DNA.
XX
OS   Equus caballus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Perissodactyla; Equidae; Equus.
XX
RN   [1]
RA   Gallagher C.P., Lear L.T., Bailey E.;
RT   "Sequence characteristics and chromosomal distribution of a DNA
RT   satellite, ES22, in genomes of the horse and other equids.";
RL   Unpublished.
XX
RN   [2]
RP   1-471
RA   Jurka J.;
RL   Direct Submission to Repbase Update (26-NOV-2001).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 471 BP; 49 A; 114 C; 192 G; 110 T; 6 other;
     tccggcacgt gttctggacg tctggaggtg tccggcatgc ggcaggtatt cggagtgtcn        60
     gccaagtggt ctggcgtagc cggcaggtnn tttngcgtgt ccggcaggtg gttccggcga       120
     gtcgagcagg tggttccggc gtgtccggca ggtggttctg gcangtctgg caggtggttc       180
     cggcatgctc ggcaggtgat tccggagtgt ccggcacgtg gttctggcac gtctgagagg       240
     tggttccggc atgcccggca ggtgattccg gagtgtccgc caagtggttc tggcgtagcc       300
     ggcaggtgat tttggcgtgt ccggcaggtg gttccggcga gtcgagcagg tggttccggc       360
     atgctcggca ggtggttccg gcgtgtccgg caggtggttc tggcgtgtcc gacaggtggt       420
     tccggcatgc ccggcaggtg attccggagt gtccgncagg tggttctggc g                471
//
ID   L1MA9       repbase; DNA   ; MAM   ; 1059 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MA9) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 (LINE) family; L1M2; L1MA9; L1MA9 subfamily; MER32;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-1059
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [3]
RP   1-1059
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [3] (Consensus)
XX
CC   ORF2 ends at bp 684; average divergence of copies from consensus:
CC   15%.
XX
SQ   Sequence 1059 BP; 410 A; 167 C; 214 G; 267 T; 1 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaata gcaaaaaaac aaataacccg        60
     attaaaaaat gggcaaagga cctgaataga catttctcaa aagaagacat acaaatggcc       120
     aacaggtata tgaaaagatg ctcaacatca ctaatcatca gggaaatgca aatcaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaagataac       240
     aagtgttggc gaggatgtgg agaaaaggga acccttgtac actgttggtg ggaatgtaaa       300
     ttggtacagc cattatggaa aacagtatgg aggttcctca aaaaattaaa aatagaacta       360
     ccatatgatc cagcaatccc acttctgggt atatatccaa aggaaatgaa atcagtatct       420
     cgaagagata tctgcactcc catgttcatt gcagcattat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc gacggatgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatatt attcagcctt aaaaaagaag gaaatcctgc catttgtgac aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     atctcactta tatgtggaat ctaaaaaagt caaactcata gaagcagaga gtagaatggt       720
     ggttgccagg ggctgggggg tgggggaaat ggggagatgt tggtcaaagg gtacaaagtt       780
     tcagttatgc aggatgaata agttctggag atctaatgta cagcatggtg actatagtta       840
     ataatactgt attgtatact tgaaatttgc taagagagta gatcttaagt gttctcacca       900
     cacacaaaaa aatggtaact atgtgaggtg atggatatgt taattagctt gattgtggta       960
     atcatttcac aatgtatacg tatatcaaaa catcacgttg tacaccttaa atatatacaa      1020
     tttttatttg tcaattatac ctcaataaag ctggaaaaa                             1059
//
ID   ERV13_MD_I  repbase; DNA   ; MAM   ; 6833 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV13_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV13_MD_I;
KW   RNaseH.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-6833
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-6833
RA   Gentles A., Jurka J.;
RT   "ERV13_MD, an ERV1 retroelement from the opossum M. domestica.";
RL   Repbase Reports 5(11), 351-351 (2005).
XX
CC   [2] (Consensus)
XX
CC   There are no intact copies surviving in the Monodelphis genome.
CC   The largest fragments, which span >4kb, are around 88% similar to
CC   the consensus. The corresponding LTR is ERV13_MD_LTR. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
SQ   Sequence 6833 BP; 2410 A; 1182 C; 1309 G; 1929 T; 3 other;
     ttggcgagct aaataggaca aagaacctaa ctgtgatttt aagggtccaa ttgtcaattt        60
     gggcagttgg aaccattatc tcagcagggg gtctgtggaa gcagctagat gacagtttca       120
     ctgtgagctg tggtaacagt gagctgaact ctaggtggat acaaaatcca tctcccagtc       180
     aacttgatac aaagaatctg tactctcaga aaacctggtg aattagctac ataaaatcac       240
     catgggattt tctctgttag atatgacttc tctcattttc actattgtac cagaatatat       300
     acaaaatgta cttgcctatg actttctaat gccattactc tcattgacac tcctacaact       360
     aatctcttat gtccctgtgc tactattgtt tatcatgtgc ttttacatga tgatcaaatc       420
     tttggcagtt gtgtttaaac atttaaaagc aagctactgc aaagagtgat ctaatgttaa       480
     aagtgaacta tctagagact aaactagata gaatgcaaac tcaatatgag gaattactca       540
     aggctaaagg gacaatggca gaaastaaag aacatgaagc aactaaatta gagggtgcaa       600
     ctaaatcaga taaaccaact aaattagaaa tggaaactga agcattagaa agcaaaccag       660
     ctcatatgtt tcctttaagg gaggtaccta tagtgtcccc agagcatggt atagtgaatc       720
     tcatgtgcca caaaaagttt acacaagctg atatagacag ttttaagaaa aatactccat       780
     catatgaaga agaacccatg ggagttgtaa agcagttcaa gcatttaatt aagctttaca       840
     atccttctta tttggacttt gacatcctta tggatgaatt attaacaaaa agggagaaac       900
     agcagattat acaggacact aataataacc cccgaattgc caattggcca actgaggatc       960
     ctggttggga agttaactct tttgcagggt acagagactt aactacagcc agggaggcaa      1020
     taattgaaac tatgaggcaa aattccagat acccaggaac ctggtctaaa tttgagtgcc      1080
     taaagcagga agtgggagag actccctcca ctttccttga tagaattatt gactgtgcag      1140
     aaaaatggat tgggttggat attttaacag atgaaaacgt aaatcacatt cacaggcagt      1200
     ttgtgaaaaa tgcatgccct gtggtccgaa attatttttg gagtaactgt ccaaattggt      1260
     ttgacatggg tcttgatgaa attagaattg ctaactatgt tttccaagat gagaaagata      1320
     ggcaatcaga agagaaaaat gatataattg ataacttaac caaagaaatc agagagctta      1380
     aacaaaaact gaaatccaat gaagtgcagg aaaaaacagt agctgcacta agaacttata      1440
     gacaacccag aaataattac aaccccagac aatacagaca aaccccaaga tgttttcttt      1500
     gtaacagacc tggtcatctc atgagagagt gcagatttag gggacaattc tttggacaaa      1560
     gcttcagggg aaactgaggc aatagattta atcactttaa tggattcagg caaaatggat      1620
     atagaaatta tgggtttaat aatggattta ataatgcatt ccagtatggg agaccaaact      1680
     acccaaatta ttttgatact ggatgctacc ataattcaca acaagccgca gacctgaata      1740
     ccatgcaaga atatatcaaa gcaggtgctc gtccaaaata ttcccaagta gctggtggga      1800
     atccccaaaa acttgatatg caaaaaggtg caacttcatt atgaaggtgt gccaaggcct      1860
     gtgcagttaa aaatatagta tatggagaaa atggactagg aagtatgggc aatgaaataa      1920
     aaactaatga aaatgacaaa gagattttaa aaacatggsa aattagtaca ggagaaatca      1980
     atgaagaatt agagaatgag gaacaggaac aagtgttgag ttttcctgat cctagtgtgt      2040
     tagctcctgt gatacctgtc cattctccag aaaatagcac agaaccccat gtaaccctaa      2100
     aaataggaac acaagtttat gattgtctct tagacacagg tgctgccaaa tctgtgttgc      2160
     agaaatcccc tgaagagtgc aaagcagtgg gttcaataga agttgtgggt gtgacaggaa      2220
     aaccacaaaa agtaaaaaaa ttagaaccaa gaatggtttc acttggacct ctaagtgtag      2280
     aacactcttt tctcttaatg ccaaattccc caatgaatct agtgggtagg gatcttcttt      2340
     gtaaattgag agcaacaata gtatgtaccc caaccggaga tatttcttta aaactcccag      2400
     aagaatccct aaaccttttc cctgtattat tcctagatac agtagaatca gagggggaag      2460
     ggaataacat ctatcagata ccagatgata ttccaaaagg cttatgggct acagattcta      2520
     cagatgtagg tttattaaaa tcagcaaccc ctgttaaagt gctgactaaa ggaggtccac      2580
     caccatgcat tccacaatac ccacttagta aagaggccat tgatgggatt accccgataa      2640
     taaattcatt attgcagcaa ggcataataa taccatgcat ctctgaatat aacaccccaa      2700
     ttttaccagt taaaaaaccc aagctagatg ctgaaggatg aatagtctat agattcattc      2760
     aagatttaag agctgttaat gatcatgtag taaaatctta cccagttgta ccaagtcctg      2820
     ctaccatcat ttcatctatc ccaagtcatg caaaatattt tactgtggtt gatttatgtt      2880
     ctgctttttt ctcaatacct atacacgaag actcacaaaa aatatttgca ttcacatggc      2940
     agggaaatca atattcatgg tcccatttgc cacagggatt ctgtgaaagt ccttcattgt      3000
     tttctcaaat cttaaacaaa gatttgaaaa atattcagtt taaggacagt aaacttattc      3060
     actttgtaga tgatttactt ctagcatcac catctgcaaa agtgtgccta tgtgatagta      3120
     aacatcttct gtgtgagctc tacaagaggg gacacaaaat atcaaaaact aaacttcaat      3180
     ggtgtcttcc tcatgtagaa tatttagggt ttgtgctgtc tgaggggtcc agaagcattt      3240
     cccaaaagag agtagcagac atacaaaagc tgagtgcccc taagaccaaa aggcaactca      3300
     gagctatctt aggaaccaca ggtttttgca gacaatggat acctaattat ggtgaactta      3360
     caaaaccact gactgcttta acaaaagaca ctgagaaaga tccactgaag ctaaaaccag      3420
     agcatttgca agcaattgca aagttaaaag aggcaatatt atcagctcct gctcttggta      3480
     tccctaatta ttcaaaacca ttctcgctct atgtccatga gcgaaaggga atagcttcag      3540
     gagttttgac tcagagctta ggaccaaacc aatgtcctat tgcatattat tctggtcaac      3600
     tagatcccat agctgcagga atagctccat gcttaagagg ggtggcagca actgcattgc      3660
     ttgttaccaa atctgcagat ttagtgttag gctgcccact gacagtttat tgttcacatg      3720
     aagttgaggc acttctctga aagttcagaa tgcaggcatt ttcagatcaa tgcctggcta      3780
     aatatgacat agtgcttttg gggaatgaac atataacatt aaagagatgc aacaccttaa      3840
     atccagctac attattacct gatttaccaa cacaggggga accattgcac aattgtgaaa      3900
     ctgtagtgca attaatagaa aggcctcaag aaaatctgtc agacacacct cttgacaacc      3960
     ctgacctgat cttattcaca gatggatcat catatatgca gaatggaata agatttacag      4020
     gtgctgtggt agtaagtgaa tttgagaccc tatggtttgc ttcactacct aggaacctaa      4080
     gtgctcaggg agcagaatta atcactttaa aacatgcatg tgagcttgca agagacaaac      4140
     gtgcaaatat ttacactgat tccaaatatg catttggaat ttgccatgct gttggttctc      4200
     tctggcttca gagaggattt ttaacatcta gtgggaaaag aatcgctcat gcagaaataa      4260
     tttgagaatt actgtcatct ctccaactac caaaagagtt ggcagtgatt cactgcaaag      4320
     ggcattcttt aggacaagac ttagttgcca gaggaaatca tagggcrgat atggctgcac      4380
     aatatgctgc gcaacaaaat gctccagctt gcattatgaa tctctctgtt atagatacca      4440
     cagatttaga aaaagcatac aatgacaaag aggttcagaa gtgggagcaa aattttggag      4500
     ctagaaaaga aaatgggatt tggatagcat cagtgggaaa accaattctt ccaaaagcat      4560
     tttactctta catctgccaa gcaatacaca aaaagggtca ttttgggaca caagcattaa      4620
     ttgatactgt taaaagaact tggttagctc caggaattag cactgtggca aataagatct      4680
     gctcagcttg ctctgtgtgt gcacaattta accaaagcat atttaagcaa aaggcttttg      4740
     gtggtcgtcc actagctcac acaccatttg agcatttgca aatagattat atcaacatgc      4800
     ccaaatcagg acaatttaaa ttttgtctag taatagtgga ccaactaact agatggccag      4860
     aagcttttcc atctagtaaa aacacatcaa gctttgtagc caaaatcttg ttgaaagaga      4920
     tcattccaag atatggtata ccactaagag tagattctga caaagggagc cattttacag      4980
     attcagttct aaaacaagtt tatgagaatc tgggtatcat gccaaaattt catgtcccat      5040
     atcaccctca aagttctggg caggtggaga gactaaacag agaaatcaaa actatggttg      5100
     ggaaattatg catggaaact catttgaagt ggccagagat tttgcctcta gcactgttct      5160
     atctgcgcac tagaccaaga ggagatgtgc atatctcacc atatgaaatg ttatttggac      5220
     attcaccatt gcaggcaaaa agttttaaaa cagcttatgt atctatgctt ggaggggatc      5280
     ttgcacttgc tgaatacatc acagagttac aaaacagggt tagagaatta caagaaatgg      5340
     gaattttaac tcaagggggt ccgttagatt atgcactcca tttgataaaa cctggggatt      5400
     cagtttacat aaaaaacttt aatagaacta gcgcaacaca accattatgg gtaggacctt      5460
     tccatgttat tttgacaaca ccatgtcagc tatttgtgta ttagagaaag aaacgtggct      5520
     gcattgctcg catgtgaaaa aagcagcaac agcagaagaa gagattacat cagacaacat      5580
     ggctgcagtc aaaaagatat cagaagaaga aattattcaa gaagaagaat gaaatgaaga      5640
     cagagatcaa gatcaagaca aaggagaaga caacatagaa gaaacataga tgacagcaaa      5700
     aaggacaatt gaactgtaac aaagacattg cagaaaacaa atcaacacag agaagaggaa      5760
     cacagactga ttatggacat gaactgtaag atttttgcgc cattctaaca ttacacactt      5820
     tcactatagt tgcaaacaaa cactacatag taacaacacg aagacagaag acagtagcag      5880
     aggaggtgac tttaaagatt tggtaagtat tcactacaaa ataacataca cacatatagg      5940
     acacatttct cacaaactct gcaacatcat aaccaggtga tgagtatcca tagaaataaa      6000
     taaatacaga taaatcacct tgggaaaata ataataattg tacacattaa aataataaga      6060
     tcttatctca caggaagact ttatgtgttc ctaggagata aaatcaagaa aacatacata      6120
     actttctaaa gaaaatcttt taagtttttc ttagactatc ttaagggggg aagtttattt      6180
     tcctcctgca acatgtaaat agtttataca taacatatac atagatgtag aaattgtaca      6240
     gatctgtata tttatataga tgtgtatata gttaaattat tacaaagttt tgattttatt      6300
     agtatagtaa gttgattttg agttttaatg tagttagttt tggttttctg tattaatgat      6360
     aggataaggt cttagcatag taaaaagttt catttgaatt gttcaaatag gatttgtaaa      6420
     atgaagtttg cttgagtttt gcatagttat tattttagat agactttagt tttttgtaaa      6480
     acataagtta gtttgtaact gtattttatt gtttcaaaag tttttcaaaa gtttgcattt      6540
     tgtattttac attttgaatt tctgtaattg tatgttttgc acttgaattt ctgcaaatat      6600
     gttttcattg attatttgtt ttcattgaaa ttttcttttc tttcatttat atccctagta      6660
     caggttagca tagataaagt gtagcaataa gaataggata agataagcat aagattaaga      6720
     ctatttttag gaaatataat aataataagg ttaggtatag ctttagaatt acatagaata      6780
     gtgagcatat gggagagatt tttcatctct ccatatgctc gaagggggga aat             6833
//
ID   L1_Felid    repbase; DNA   ; MAM   ; 941 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   L1 Non-LTR Retrotransposon from cats.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Felidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia.
XX
RN   [1]
RP   1-941
RA   Smit A.F.;
RT   "L1_Felid - L1 Non-LTR Retrotransposon from cats.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   11% div;  first 266 bp of L1_Fc.
XX
SQ   Sequence 941 BP; 374 A; 169 C; 192 G; 198 T; 8 other;
     ctagtatcca aaatctataa agagctcacc aaactccaca cccgaaaaac aaataaccca        60
     gtgaagaaat gggcagaaaa catgaataga cacttctcta aagaagacat ccggatggcc       120
     aacaggcaca tgaaaagatg ctcaacgtcg ctcctcatca gggaaataca aatcaaaacc       180
     acactcagat accacctcac gccagtcaga gtggccaaaa tgaacaaatc aggagactat       240
     agatgctggc gaggatgtgg agaaaaagga accctcccgc actgttggtg ggaatgcaaa       300
     ctggtgcagc cactgtggaa aacagtatgg aggttcctca aaaaattaaa aatagaacta       360
     ccntatgatc cagnaattcc actactgggt atttacccaa agaatacgaa aacactaatt       420
     cgaaaagata catgcacccc tatgtttatn gcagcattat ttacaatagc caaantatgg       480
     aagcaaccca agtgtccatc gatggatgaa tggataaaga agatgtggta tatacataca       540
     atggaatatt actcagccat aaaaaagaat gaaatcttgc catttgcaac aacatggatg       600
     ganctagagg gtataatgct aagtgaaata agtcagtcag agaaagacaa ataccatatg       660
     atttcactca tatgtggaat ttaagaaaca aaacaaatga acaaagggaa aaagagacaa       720
     accaagaaac agactcttaa ctatagagaa caaactgatg gttaccagag gggaggttgg       780
     tggggggatg ggtgaaatag gtgangggga ttaaggagtg cacttatcgt gatgagcact       840
     gggtaatgta tagaantgtt gaatcactat attgtacacc tgaaactaat ataacactgt       900
     atgttaacta tactggaatt taaataaaaa cttnaaaaaa a                           941
//
ID   CarLTR11b_LTR repbase; DNA   ; MAM   ; 552 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from Canidae.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia.
XX
RN   [1]
RP   1-552
RA   Smit A.F.;
RT   "CarLTR11b_LTR - ERV1 Endogenous Retrovirus from Canidae.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Almost identical to subfamily a, but misses bp 190-284 through
CC   recombinational deletion. Preference for XTAX TSD; 7-8% subst
CC   close to -89.
XX
SQ   Sequence 552 BP; 174 A; 125 C; 111 G; 142 T; 0 other;
     tgatgtagga acgagttagg ggcagacggg gctaggcagg gaaagataag ggaaaggccc        60
     cagagtcagg ctcctaccca tcccaagaaa acagagataa gacagtaaaa acagaaaaaa       120
     taaacctggc tccctagctc caaaatgtta gggagtatcc ccctttaatg gctactaagt       180
     aatcacagaa atcccagatg tagagaaata ttatggagga gatattaacc agagagaagg       240
     gaacaccttg tttgtgctca tgatatttac aaagaaacat cttgtttgtt attatgatag       300
     ttacaagtcc accatgtttg ttctaaatat ccaccctgat attgacaaga aatttaccaa       360
     gttccctggt cagtttccta taaaagacag accataaaag ccctcagtgg caaccctgtc       420
     gggacccctc tcacttttga gagctttctc tgtatctctg cttaataaac ttctatcgct       480
     ttgctcactc tctgttgtcc gcgagattca ttcttcgact ccgtgagaca agaaccaagc       540
     tctcccgtat ca                                                           552
//
ID   L1-3_MD     repbase; DNA   ; MAM   ; 4960 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   L1-3_MD, a LINE1 element from Monodelphis domestica - consensus
DE   sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   L1-3_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-4960
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-4960
RA   Gentles A., Jurka J.;
RT   "L1-3_MD, a subfamily of L1 element from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(10), 312-312 (2005).
XX
CC   [2] (Consensus)
XX
CC   ~127000 copies of this sequence are found in the Monodelphis WGS
CC   assembly, with average similarity to the consensus of ~89%. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           2764..3612
FT                 /product="L1-3_MD_1p"
FT                 /note="Fragment of endonuclease domain."
FT                 /translation="RKKLKELKEEIDSKTILVGDLNLPLSELDKSNQKINK
FT                 KEVREVNEMLEKLELIDIWRKLNRDKKEYTFFSAVHGTYTKIDHVLGHRNI
FT                 ANKCRKAEIINATFSDHNVIKIIINKGPWKGKFKINWKLNNLILQNWWVKK
FT                 EIIETITDFIKENDNEETSYQNLWDTAKAVLRGKFISLSAYSNKIEREEIN
FT                 ELGLQLKKLEKEQIKNPQIKTKLEILKIKGEINKIESKRTIELINKTRSWY
FT                 FEKTNKIDKVLVNLIKKRKKRIKLTVSKMKRVISPLMKRKLR"
XX
SQ   Sequence 4960 BP; 2119 A; 774 C; 991 G; 1073 T; 3 other;
     gacagagtga aacaactttc aagaaaagaa aaacccaaaa ggtaggcaga gatcatctgg        60
     ggaactgagg tgagagggga gcagagctag caggaggcaa agcaacaagt gaagagcaar       120
     ccacataccc caccacacca cacatctgct gtcccaggtt catgaaccta agwccaagcc       180
     aaatcagacc ctgagatcct gctgggcaaa tagtggtcca agccaaccca caccccttga       240
     aatttcaaac ctgtggagaa gtccaaggca atctgggctg aagtggactg atctgtgtgg       300
     gcccagagca aagccaggaa tcccagtctg ggcttgggat gaggacataa tccacaattt       360
     ggggtgagga catagttctc aaggggagcc tccctgggat ctttttgcct aaagctaagg       420
     gtggagctcc aggacagggc aatcaagggt gtgcctgatt ggatcaagta cacagtgaga       480
     ccaaacaact tgagcctaag cctggggcta gaatttgatc agcccctgac ctgatcaagt       540
     tcagactgag atcaaaagct tacacccaag cctgaggaaa gtctttaagc tatcagcatc       600
     tcaagggtca attgaatcag cagggggagg ggactctcag agctctcagc cctcagacca       660
     tcaggtaaac tggtaaaaac ccagaaaata agctragaat aacatcaagg aaggactgaa       720
     gtttaagagg gtaccccaac ttcccagaaa acagagccta cctataatta gataggaaaa       780
     atgagcaaac aatcaaaaaa gcacctaact ctaaagaatt ttttatggag acaaagagca       840
     aggtacagac acagaagggg acagtgaaag caaaggaaac acacgcaaag tccaaaagaa       900
     aaatatggat tggacacaga ttctggaaga gctcaaaaaa gacttcaaaa accaattaag       960
     agaggcagag gaaaagtggg gaagagaaat gaaagtgatg caagaagaaa agaaagtgat      1020
     gcaagaagaa atgaaaagtg atgcaagaag aaatgggcca attgaaaaag gagaaccaaa      1080
     aactgacaga ggaaaatcag gccttaaaaa tcagaattga ccatctagaa actaatgatt      1140
     tcatgagaaa tcaagaaaca ataaagcaga atcaaaggaa tgaaaaaaac agaggaaaac      1200
     atgaaatatc ttattgaaaa aacaactgac ctagaaaata gatctaggag agacaatttg      1260
     agaattattg gactacctga aagccatgat caagaaaaaa accttggaca tcatattaca      1320
     agaaattatc aaagaaaact gcccagagat ccttgaacaa gaaaataaaa ttgaaattga      1380
     aagaattcac agatcacctc cagaaagaaa tcctcaaatg acaacttcca ggaatgtaat      1440
     agctaaattc aagagccacc aagccaagga gaaaatactt caagcagcca gaaagaaacc      1500
     attcaaatac catggagcta caatcaggat cacacaggac ctagcagctt ctacattaaa      1560
     ggattaaaag gcatggaata tgatattcag gaaggcaaaa gatttgggtt tacaacccag      1620
     agtcacctat ccagcaaaac tgagtatatt ctttcagggg aaaaaatgga cattcaataa      1680
     gatagaagat ttccaagcat tcctgaggaa taagccagac ctaaacaaaa aatttgaagt      1740
     ccaaacatga gacacaagag aagcccaaaa aggtaaataa gaaagagaaa atttaaggga      1800
     ctcattaagg tcaaaatgtt tatatgtcta catggaaaga ggatttctgt aattctcaaa      1860
     aattactctt agtagtagag aagatagaag gaatttactc agaaagaggg tggagaagta      1920
     agctgattat gatgatatga tgtatatgat gatatatatg taaatgtgat gatatggaat      1980
     gatatgtatg tatgatatga tatgtatgca tatgaatgat atgtaaaaaa tcaatcaagg      2040
     gctgaaagag agggttgcac tgagagaaaa gggaagggag agatagaatg gggtaaatta      2100
     tataacataa agaggcatga aaaatcatta tagagagggg aggataaggg tggtgatggg      2160
     caatgcttaa actttactct cattgtaact ggctcagaga gggaaaaaca agtatactca      2220
     gtggggtata gaattctatc ttaccctaca gagaagtaga aggggaataa gacaagggaa      2280
     gggggaggta attggaggga ggggaagtgg gggggtgaca aaaagcaaaa tactggtgag      2340
     gaggaacaga gtgaaaggga atagagcagg atctaaaggg gataatatga tggagggcaa      2400
     tacacagtta gtaatcataa cactgaatgt gaatgggatg aactcaccca ttaaatggaa      2460
     gtagatagca gagtggatta aaaaccagaa tcctactata tgttgtttac aagaaacaca      2520
     tttgaggcag ggtgacacac acagattcaa ggtaaaaggc tggagcagaa tttattatgc      2580
     atcatctaaa gtaaaaaaaa gcaggagtag caatcatgat accagacaaa gccaaagtag      2640
     aaattgatct gattaaaaga gataaggaag gaaattacat tttgctaaaa ggtactataa      2700
     acaatgaagt aatatcatta ctaaacattt atgcaccaaa tggtatagca tctagatttc      2760
     taaaggaaaa aattaaagga gctcaaggag gaaatagata gtaagaccat actagtgggg      2820
     gatctcaacc ttcccctttc agaactagat aaatcaaacc aaaaaataaa taagaaagaa      2880
     gtaagggaag tgaatgaaat gctagaaaaa ttagagttaa tagatatctg gagaaaactg      2940
     aacagggata aaaaggaata taccttcttc tcagcagtac atggtacata tacaaagatt      3000
     gaccatgtac tagggcatag aaatattgca aacaaatgca gaaaagcaga aataataaat      3060
     gcaacttttt cagatcataa tgtgataaaa attataatta acaagggtcc atggaaaggc      3120
     aaatttaaaa ttaattggaa actaaataat ctaattcttc aaaactggtg ggtcaaaaaa      3180
     gaaatcatag aaacaattac agacttcatt aaagagaatg acaatgagga gacatcatat      3240
     caaaatctat gggatacagc caaagcagta ctcaggggaa aatttatatc tctgagtgcc      3300
     tatagcaaca aaatagagag ggaggagatc aatgaattgg gcttgcaact taaaaaatta      3360
     gaaaaagaac aaattaaaaa tccccagata aaaactaaat tggaaatcct aaaaattaaa      3420
     ggagaaatta ataaaattga aagtaaaaga actattgaac taataaataa gactaggagc      3480
     tggtactttg aaaaaacaaa taaaatagat aaagtactgg ttaatctaat aaaaaaaaga      3540
     aagaagagaa tcaaattaac agtatcaaag atgaaaaggg tgatctcacc tctaatgaag      3600
     aggaaattaa ggtaattatt aagaactatt ttgctcaatt atatggcaat aaatatgaca      3660
     atctaggtga aatgggtgaa tatttacaaa aatataaatt gcctagatta acaaaagagg      3720
     aaatagaata cttaaataat cccatctcag aaaaaagaaa ttgaacaagc catcaaggaa      3780
     cttcctaaga aaaaatcccc agggccagat ggattcacaa gtgaattcta tcaaacattt      3840
     aaagaacaac taatcccaat actatacaaa ttatttgaca aaataagcaa agaaggagtc      3900
     ttaccaaatt ctttttatga cacaaatatg gtactgattc caaagccagg cagaccaaaa      3960
     acagagaaag aaaactacag accaatctcc ttaatgaaca tagatgcaaa aaatcttaaa      4020
     taaaatacta gcaaaaagac tccagcaagt tatcataagg attattcact atgatcaggt      4080
     gggatttata ccaggaatgc aaggatggtt taatattagg aaaaccatcc acataattga      4140
     ccatatcaat aatcaaacca acagaaatca catgattatc tcaatagatg cagaaaaagc      4200
     ctttgacaaa atacaacacc cattcctatt gaaaacacta gaaagtatag gaatagaagg      4260
     gccattcctc aaaataataa acagtatata tttaaaacca tcagcaagta tcatctgcaa      4320
     tggggacaag ttagaagcct tcccaataag atcaggagtg aagcaaggat gcccattatc      4380
     acctctatta tttaatattg tactagaaat gctagcagta gcaattagag aagaaaaaga      4440
     aattgaaggg attaaagtag gcaatgagga aactaaacta tcactctttg cagatgatat      4500
     gatggtatac ttaaagaatc ctagaaaatc aactaaaagg ctagtggaaa taattaacaa      4560
     ctttagcaaa gttgcagggt acaaaataaa cccacataaa tcatcagcat ttctatatat      4620
     ttccaacaaa actcagcagc aggagttaga aagagaaact ccatttaaaa tcactctaga      4680
     caatataaaa tatttgaatc tatctgccaa gacaaacaca ggaattatat gaacacaact      4740
     acaaaacact tttcacacaa ttaaaactag atctaaataa ttggaaaaac attaattgct      4800
     catgggtagg atgagctaat ataataaaaa tgacaatcct acccaaatta atctacttat      4860
     tcagtgccat acctatcaaa ctaccaaaaa acttttttat agaattagaa aaaaatataa      4920
     caaagttcat ctggaagaac aaaagatcaa gaatatcaag                            4960
//
ID   Ricksha_a   repbase; DNA   ; MAM   ; 1181 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   MuDR DNA transposon from placental mammals.
XX
KW   MuDR; DNA transposon; Interspersed Repeat; RICKSHA_0; Ricksha_a.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1181
RA   Smit A.F.;
RT   "Ricksha_a - MuDR DNA transposon from placental mammals..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   19%.
XX
SQ   Sequence 1181 BP; 338 A; 218 C; 206 G; 418 T; 1 other;
     gggtttggat cataatcccg aaagacacaa tcccgaacgc cataatcccg aatgttgaaa        60
     tcccgaaaga tcaaaatccc taaagtctaa aatccctaaa gtctaaaatc cctaacgtct       120
     aaaatcccga aaatcacgaa tcatagaaga atttcaaaaa gagcagcgcc acgtagaaaa       180
     tgaatgtgaa cgtattctcc gaggagagcc atgtcctaaa agaaaaaaag cagctattca       240
     tcgtgatgca agacttcaaa atatagttaa tgatcgtgaa agtcggccag ctcttatgga       300
     ctacctccgt gcaattgccc ataatctatc cctgtaatac actttttcat atgtcgaatt       360
     ttctttttag tttttttctt ttctttttta gtttttttca ctattttaaa ttgtcagcat       420
     tattttttac aattcgctat gctatgtatt tcatcttcgc atcatttcca atactggagg       480
     tataaattgt gtaaagactt ttagagagtt ctaattcgtt ttatgcattt tttttgcaaa       540
     tttgactcca cgaaagtgca ttatcacaac gttgactttg tgtgtaagca ttgtgcgtgt       600
     acgtaaaaac gttgaaactt cctcaataaa tgaagagatg tcctttttgt acatctgcat       660
     ttgtgaaaga taaaatttct cgagatctcg gctctttggg cgactgcata tgcggtggtg       720
     acccatcgcg gtttttgatc gatctcgtca aaagacttag gttgtccgtc acggtatttc       780
     agatgaccgc agttataaag ctgggtgcac acaattacca accatagtga tatgcattta       840
     tacatttcgc tttttgacct atttctttat gaatacggtt catctgctca taactgttat       900
     acccgtgcga ctgtcgttag tatacctgag tgtttatgct tgcaaaaata tgtatgttat       960
     tattgcctat tttattgtgt aaagtggcct atgaagtgtt ctgtcgtgtt tttatatgtt      1020
     tctcaaataa atcccctttt aaaaatgtaa ataaatgtct tttaaanaat tttaaattat      1080
     tttttccaga attatatttt cgggattttg atctttcggg atttcaacat tcgggattat      1140
     ggcgttcggg attgtgtctt tcgggattat ggcccaaacc c                          1181
//
ID   CfERV1a_LTR repbase; DNA   ; MAM   ; 507 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from dog.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae.
XX
RN   [1]
RP   1-507
RA   Smit A.F.;
RT   "CfERV1a_LTR - ERV1 Endogenous Retrovirus from dog.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   0.5% subst.
XX
SQ   Sequence 507 BP; 113 A; 156 C; 118 G; 119 T; 1 other;
     tgtgggaccc aggaaattta acaaaaatcc cctacccctg gacaagcaga gcaggactga        60
     ctccattttg tgctgcaccc gccacctcct gtatgacccc cacatgacct gcttattgct       120
     taaggcgctg ccccgcccta gtcaagccgc tgggcacacc ctaatcggaa atcggctcat       180
     aacaatgtaa ccctgccttg tgcccgccaa aactgcgcgc cgattctgac caaagtaata       240
     ggccagctca aatggatact atagggtaag ntgtaattca atcggccacc tgcgtgtgga       300
     ccgacatgac tgtgcaactt tctgcgtatc ccatgggcca ctggccccta taaagctgct       360
     acgcctctta gcctcggggt ccaagtccct gctccgctgt gtcgggtaca cttggaccca       420
     agctcgagct tgtaaataaa ccctcgtgtg tttgcatcgg tgtcggctcc ttggtggttt       480
     ctcggattcg caatcttggg cacaaca                                           507
//
ID   Charlie11   repbase; DNA   ; MAM   ; 2196 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   hAT DNA transposon from placental mammals.
XX
KW   hAT; DNA transposon; Interspersed Repeat.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2196
RA   Smit A.F.;
RT   "Charlie11 - hAT DNA transposon from placental mammals..";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Incomplete termini (just too diverged to handle); gave rise to
CC   Buster 3; copies 25% diverged from consensus: average Kimura
CC   substitution level is >=30% (excluding Buster3 which
CC   shows 16% substitution level in the coding region);.
XX
SQ   Sequence 2196 BP; 682 A; 393 C; 415 G; 643 T; 63 other;
     tgtggagccc agctgagcag cagtggcaag ctncatgttg aattntgttt tcatggctta        60
     attcgtaccg ccacgttgct gggtgtntct taacgcnnat gnacgagaca ncatgcgaca       120
     tggccttgtt tnaattcant tagcnactgt tgttaatgcg tcggttatan gttactncca       180
     taacaaaatt ccgtgntatc tctggaatac tatctgagtt tttgtgtgcc atgttgaaga       240
     ancnnaaatg ngatgacaac tatgttcgtt nccgattcnc ttgtacaacg gaggtggatg       300
     gaactcaacg accacagtgt atgctgtgca actcgttatt ttcaagcgcc aanctcangc       360
     catcgangct nccngaatat ttcaacagac agcatggcgg cacagccgga catgacctcg       420
     acannctgaa gtncatgcga gcacaatttg atcanagcgg aaccttgaag acatntggat       480
     ttgtgtcact tgaaaagcct ttgttacaag cattctatca agttgcgnat tcatgtgcca       540
     aggaaaagaa gcctcataca gtagctgaaa aattagtgaa actttatgca ctagaaatgg       600
     caaaaatagt attgggacca gangcacaaa agaagcttcg gcaggtnccc ttgtcaaatg       660
     acgtgatccg ttctagaatt catgagatga gccaggatac cttgcagcaa gttatagaag       720
     atatcaaagc tagtcctctt aaagtgggta ttcagcttga tgagncaact gacattgatg       780
     gctgcagtca gctatcggtg tttgtgcgnt acataaaaga aagagagatc gtagangaat       840
     gcttgttctg tgaaccattg cagttaacta cgaaaggaat cgntgtgttc aatctcatca       900
     gagacttctt tttgaagcgt aagataacac ttgatacatg tggatcaatt tgcaccgatg       960
     gtgcccctgc tatgctagga aaaaattcag gatttgttgc ctacgtaaaa aaagaaatac      1020
     ctcatatcat gattacacat tgtatgttgc accgtcatgc acttgccaca aagactttgc      1080
     ctacaaaatt gaaggatgtt ctgtttnctg cagtgancgc agtaaacttc accaaagaga      1140
     gcgctctaaa tcatcgcctc ttccatgctt tttttaaaga aattggtacc gagcacactg      1200
     tcctcctttt ccatacagaa atgaggtggc tttnntgagg ccagatactt actcgtattt      1260
     ttnaaatgtn taaagaaata aatcagtttc ttcacaacta aagcagtaat ttagttgatg      1320
     actttgaaaa tagagagttt atcntttgcc tagcatacgt agcagataca ttcaaacact      1380
     taaatgaacn caatgtatct atgcagagaa ctaggatgaa catagcgata gccagagaga      1440
     agttatctgc ttttattagg aaacttccan tttggntaaa gnatactgag aaaagaaatt      1500
     ttactaactt tccttttctt gaagaaatag ttgtttcaga aaatgaagga ataactatcg      1560
     caantgaagt gacaacgcat ttgcaacant tgagtgactc tttccatgga tatttttcca      1620
     ctggagatct taatgaggca aagaaatgga tatcggatcc attncttttt aatctggatt      1680
     ctatcaatga tagtnatttg ataaaatgtg atttcactga attacaagct aacggtcaaa      1740
     tccnaatgga atttgagaca ataaagcttg agaatttctg gtgtgcccaa ttgacagcat      1800
     tttcacaact ggcaaagaca gcactggaga tccttgtgnc atttgctact acataccttt      1860
     gtganacagg atttttatca cttttgcata tcaaaacaaa gaccagaaac cgcttaaatg      1920
     tgagtgatga catgcatgtg gctatttcaa naaaagttcc tcatttctcg aanatcattg      1980
     aacaaaagct acagcagaaa tcactgtaag ctaatatact ttctttatgt aacaatttca      2040
     taactttata ncattntaaa tattaagntg taactctatt tctttcattc tatanttatg      2100
     atatagctta ananttgtct aaaaatataa cttnaagaac taacctacta cagcaatttt      2160
     gtttatgaga tgtgagatta cgttttgaga ataaaa                                2196
//
ID   ERV21_MD_LTR repbase; DNA   ; MAM   ; 465 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV21_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV21_MD_I.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-465
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-465
RA   Gentles A., Jurka J.;
RT   "ERV21_MD, an ERV1 class endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 368-368 (2005).
XX
CC   [2] (Consensus)
XX
CC   The 465 LTR of ERV21_MD. Elements are flanked by 4 bp TSDs. This
CC   consensus was reconstructed from the June 2005 release of the
CC   6.8X WGS sequence.
XX
SQ   Sequence 465 BP; 157 A; 104 C; 111 G; 93 T; 0 other;
     tgagggaggc cggaaaatgg ccaaacttga gggcctaaca agctgacctg tcagaacggt        60
     aaatatgcca aatcctagca ggaaggccta atgagctggt cagccttgag aaacttgtca       120
     gaaccataaa catgccaaac caccagctgc agtaggtacc agataaaggc caggaagacc       180
     ccaataaata tgtcaaacaa caggccagga agaccccaat aatatagaat tgtcaaagtt       240
     ccaagaatag taggaagccg ataagggcca tacatgcagg caaaattcca aggatggtaa       300
     ggtacctaca gaaaagtata aaaagcccag cctgtcagaa gcaacttgga actctgatga       360
     tagaggttcc cactgatgcg catcagttca ataaatggcc tttctctgcc tgtttgcatt       420
     gttcgtggac ttccatggtg gtgggtgaaa tcccggacct taaca                       465
//
ID   MER82       repbase; DNA   ; MAM   ; 653 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 3)
XX
DE   MER82 repetitive element - a consensus.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; MER2 family;
KW   MER82; Putative non-autonomous DNA transposon.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-653
RA   Smit A.F.;
RT   "MER82..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   MER82 has 20 bp terminal inverted repeats quite similar to those
CC   of
CC   Tigger2. It is flanked by TA duplication sites.
XX
SQ   Sequence 653 BP; 200 A; 139 C; 132 G; 176 T; 6 other;
     cagttgatcc tcattatcca cagtagttat gttctataaa gtcaccgcga gcactgaatt        60
     agcgaatact gaaccatcgc tcctagagga aatacagagt taggttcctg caagcctctg       120
     gtcacaacat tttcatcaac cgatcaatat ataacyttgt tttatgtgtg tttctgttta       180
     aagacnnctt atttaatata tattgttgat ttattaacac tgaactcaca gccaacagca       240
     ctataactca tgcctgaatg aagcttatct aacacacata ttttctccat aaggtacatc       300
     acagccttct tgtgcttagg aacaccagac agcacttcag cactatgctc ggggccattt       360
     taaacggcga aatcaccaac aaaaagcaca aaaatgtgaa aaacgtggca ctaaatagac       420
     ctcgaaaagg acgcttgttt acggtatgag agctgaaaca agaaggcaga gcgtcgcctt       480
     gttcgacctc agctgggaac gtgcacgtcg ggcgactcga atttttcgct gctctgcgca       540
     tgtntgcaaa tgaccgngaa agtgctncaa gtattgattt tggggttaca aataaatttt       600
     agcgagtagg cgaattcgca aatacggaat ccgtggataa tgaggattga ctg              653
//
ID   NERV2_MD_I  repbase; DNA   ; MAM   ; 2811 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   NERV2_MD, a non-autonomous endogenous class 1 retrovirus-like
DE   element from Monodelphis domestica - consensus of internal
DE   sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; NERV2_MD_I.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-2811
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-2811
RA   Gentles A., Jurka J.;
RT   "NERV2_MD, a non-autonomous ERV1 class retroelement from the
RT   opossum M. domestica.";
RL   Repbase Reports 5(11), 401-401 (2005).
XX
CC   [2] (Consensus)
XX
CC   This non-autonomous element has characteristic internal/LTR
CC   regions of an ERV, but has no coding capacity. The internal
CC   sequence is similar to NERV1_MD, but this element has different
CC   LTRs. Copies are numerous and ~90% similar to the consensus. The
CC   autonomous counterpart is not identified. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 2811 BP; 788 A; 523 C; 486 G; 998 T; 16 other;
     agttggcgac cccatggggr aaaaaaaaaa actctcaatc ttctgatttc ttttctgatc        60
     tttagttcaa cttttaatag ctagtgccta gaattttttt tgagccacat ttctctggct       120
     gaggtttttt taccctcgca aagctgctgc tcrttccagc catttagctc agctttctcc       180
     tgccgccacc atccnctttg gactgcccac ccctgctgcc cgctccactc ggccctgcct       240
     gcctgcgctc tggctcctgc tcctgcccac ccsactggtc tctcgctcac ctggcctacr       300
     cgaccccaat cagctcatca cccagatcct tggagcagat cctcaggact catttctatc       360
     agctggtaac aawattgggg gggggctgct ccactggact ggggcaggag gagggatcag       420
     agcaggggag agagaaaagg gagaggagaa gaaacagatt tttcaaacag aaacttaaaa       480
     gcaatgggct gtttaaaagg ataccttttg actgttctgg taatttcatt gacttcacct       540
     gcgtgtcagg gagaagattc agcccaaaga ttcaactttg gaaaaaccca aggaacttta       600
     aaagactaga ggytatattt taaggcattt cagactccaa tggtttataa aaatctctgt       660
     attctattgc attttctttt tgtttaaggt ttaactttgt gattttaagt tcatatatta       720
     ctggattcaa tattattctg ttacactgaa ggttgattga atttattttg aatgtactga       780
     gttttaaaat tctgttgttt ttcccctata actgtgctga aaaaattatt gtgattaagc       840
     ccatatatga aaaaaaaaat agtttttctw tttttgactt tgtaaattts wcatagagga       900
     tagatggact tcagaactgg ttataattgt ataacaacct ttggaaaatt taatgtgcta       960
     aatatctcaa atgattttaa gggtttttta aatatgattt ttgtaatttt ttttaacaat      1020
     ctctggttat ttttgcctgc ccctaccacg aggtaaggcy tmtagtagct gaagtgaaat      1080
     acattttata acccccaacc ttcccacatt tctaaatatg tgaatggaag ttggggcagt      1140
     taatctcagg gcatttgtat ccctaaaaag cctccaaaaa aggagcaccc ctttatttat      1200
     actcttcagc tcactacttt acttccacca gaatgatata tagatttctt gattatgttc      1260
     ttaacccaag atgagtttta ctttgtttaa aaawatatgt ttattaccaa ggttgaaaga      1320
     ttgctacgtt tgtaaaaatt gtgacaaata tccatcaatt cataggtttt aaaaatgcca      1380
     tacagcaact tatgtgaaat atgawagtgt gtttgtttgc tattgtaatt aattgggcta      1440
     ttgagaattt tggggatatt gataactaca tatttgtact actgtttttt taaaaaaaaa      1500
     ttgttaacct tgttcaattc atttgccttc tactcacagt gagcatggcc agatattaag      1560
     aggaaatgga tctcattttt ggtgagaaag ccttgtattt tatattttct tagctgacac      1620
     agagtgtcaa tgattataag ctatattttt gaatttttaa agctctttta ttattatatt      1680
     tttcttgcat gtgcaatata ctatttsttt tttttttttt ttttctctcc tttttatatt      1740
     tgaagcacat gtcaccagca ttaagatttt ctttaacttt ttgayttttc agtactacaa      1800
     gtttaagata catttgctaa tgcatgccct aaaaagcttg tgactataaa aatgatgcca      1860
     ctaattattt aaataaatta tgggactttg cttaatgatt ctgtctgatt ccaggacaag      1920
     atatacacac aagagccatt gcacagagcc aaagaaaagc caatccagga tggattgatg      1980
     cacttctagg ccaatacaaa ggtcttgaac ctagtgtgaa gactcgaggt tactgtgttt      2040
     aacatgtgtt aagacatagg ctttccttgt gtccacactc actctgaaaa tactcacaga      2100
     cgagtatccc caaaaccttg gctcctataa tctggtcccc ttttctgcct ttcatagtgt      2160
     ggtacctttc tgtagtcctg gctactgact gggtaaatgc atcattgctt agatcatttt      2220
     gattgggccc tgattcaagg acctgttata gatttatttt tcttttactt ggaattttta      2280
     cacataagac tttgatagtc tatattttca tccagaaatt tttctttttt ttttggattt      2340
     ttctgatatc tttttaatat ctcttgccaa ttgattcata tacctcatac ctcagccatg      2400
     catccctaag tgatcctgta tttttcaatc accctcttaa cggggggaat gtaaaaaata      2460
     tcattattta aattgcaaag tttaaattcc ttttgagaag aattttaggt aaagaagatg      2520
     ctacctctct gaatccagaa ctgaactgtt ggagaagcca ccatgaagaa gcctccagac      2580
     cacaagctgc acaaaaatga actttgggtg tagttgattg aacatttatt tgtatgtata      2640
     ctttcatgcc aaaggggact gccccctaac tggctttttg tcaatgcgtc cagcaattat      2700
     tggttttatt ctttttttct cttatcctca aattattgta atctttaaat tgattatgtt      2760
     tttatgatcc tttggggaag gacttcttcc cagaggatca aacgggggga a               2811
//
ID   CfERV1b_LTR repbase; DNA   ; MAM   ; 437 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from dog.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae.
XX
RN   [1]
RP   1-437
RA   Smit A.F.;
RT   "CfERV1b_LTR - ERV1 Endogenous Retrovirus from dog.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   0.5% subst.
XX
SQ   Sequence 437 BP; 95 A; 123 C; 109 G; 110 T; 0 other;
     tgtgggaccc aggaaattta acaaaatccc ctacccctgg acaagcagag caggactgac        60
     tctattttgg gctgcacccg ccttgtgctg acctgcttat tgcttagggc actgccccgc       120
     cctagtcaaa gaccagggca caccctaatc ggaaatccgg ctcagtgata ggccagttca       180
     aatggatact ttagggtaaa atgtaattca atcggccacc tgcgagtgga ccagcatgac       240
     tgtgcaactt tctgcgtatc ccattggcca ctggccccta taaagttgct aagcctctta       300
     gtctcggggt ccaagtccct gctccgctgt gtcgggtata cttggaccca ggctcgagct       360
     tgtaaataaa ccctcgtgtg tttgcatcgg tgtcggctcc tcggtggttt ctcggattcg       420
     cgatcttggg cacaaca                                                      437
//
ID   L1-1_MD     repbase; DNA   ; MAM   ; 6356 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   L1-1_MD, a young LINE1 element from Monodelphis domestica -
DE   consensus sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; L1-1_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-6356
RA   Monodelphis domestica sequencing consortium ;
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-6356
RA   Gentles A., Jurka J.;
RT   "L1-1_MD, a young L1 element from the opossum M. domestica.";
RL   Repbase Reports 5(10), 310-310 (2005).
XX
CC   [2] (Consensus)
XX
CC   A relatively young L1 that has been active recently, and may
CC   continue to be so. Many full-length genomic copies are >99.5%
CC   similar to the consensus. Copies are flanked by 16-17 bp target
CC   site duplications. There are around 88000 copies of the element
CC   in the genome assembly. This consensus was reconstructed from the
CC   June 2005 release of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           752..1672
FT                 /product="L1-1_MD_1p"
FT                 /translation="MTNSTEAQKPQNTKKNKKKGATLDTFYGAKIQNTEQI
FT                 EEDIQENSPKSSKGNRNSPQTHEEFESERTKKMEALWEEKWEMMQKKFTHL
FT                 QNQFDQTVKENQALKQELIKQSQNTKKLEENIKYLTDKVIDLENRGRRENL
FT                 RIIGLPEKPEINTKLDMVIQDIIKENCPEILEQGGNTSTDRAHRTPSTLNP
FT                 QKTTPRNVIAKFQSYQTKEKILQEARKRQFRYKGMPIRVTQDLASSTLNDR
FT                 KAWNMIFRKARELGLQPRISYPAKLTIYFQGKVWAFNKIEDFQLFAKKRPE
FT                 LCGKFDTENQRARNT"
FT   CDS           2207..6010
FT                 /product="L1-1_MD_2p"
FT                 /note="Endonuclease/reverse transcriptase."
FT                 /translation="MPGSPQMTIITLNVNGMNSPIKRRRIAEWIRIQNPTI
FT                 CCLQETHMRRVDTHKVRIKGWSKTFWASTDRKKAGVVIMISDKANAKIDLI
FT                 KRDREGNYILLKGTLDNEEISLINMYAPNNIAPKFLMEKLGELKEEIDNKT
FT                 ILVGDLNQPLSNLDKSNQKINKKEVKEVNEILEKLELIDIWRKINRDKKEY
FT                 TFFSAPHGTFTKIDHTLGHRNIAHKCKKAEIMNAAFSDHKAIKIMISNGTW
FT                 KTKSKTNWKLNNMILQNRLAKEEIIETINNFIKENDNGETSFQTFWDAAKA
FT                 VIRGKFISLKAHINKQGRAEINQLEMQLKKLESDQIKNPQQKTKLEILKIK
FT                 GEINKIESDRTIDLINKTRSWYFEKTNKIDKVLVNLIKKRKEEKQIHSIKD
FT                 EKGDSTSNEEEIKAIIRNYFAQLYGNKYTNLGEMDEYIQKYKLPRLTEEEI
FT                 EFLNNPISEIEIHQAIKELPKKKSPGPDGFTCEFYQTFREQLTPILYKLFD
FT                 IISKEGVLPNSFYDTNMVLIPKPGRSKTEKENYRPISLMNIDAKILNRILA
FT                 KRLQQVIRRIIHHDQVGFIPGMQGWFNIRKTIHIIDHINKQTSKNHMIISI
FT                 DAEKAFDKIQHPFLLKTLESIGIEGSFLKIINSIYLKPTANIICNGDKLDA
FT                 FPIRSGVKQGCPLSPLLFDIVLETLAVAIREDKEIEGIRIGKEETKLSLFA
FT                 DDMMVYLKNPRDSTKKLIEIINNFSKVAGYKINPHKSSAFLYISNTAQQQE
FT                 LEREIPFKITLDKIKYLGIYLPRQTQELYEHNYKTLATQLKLDLNNWKNIN
FT                 CSWIGRANIIKMTILPKLIYLFSAIPIELPKYFFTDLEKTITKFIWKNKRS
FT                 RISREIMKKNTYDGGLAVPDLKLYYKAAVIKTIWYWLRNRKEDQWNRLGEN
FT                 DLSKTVYDKPKDPSFWDKNPLFDKNCWENWKTVWERLGIDQHLTPYTKINS
FT                 KWVSDLNIKKETISKLGKHRIVYMSDLWEGKGFKTKQDIERITKCKINNFD
FT                 YIKLKSFCTNKTNITKIRRETTNWEKIFIETSDKGLITHIYNELNQLYKKS
FT                 SHSPIDKWAREMDRQFSDKEIKTINKHMKKCSTSLIIREMQIKTTLRYHLT
FT                 PSRLANITAKESNECWRGCGKVGTLIHCWWSCELIQPFWRAIWNYAQRATK
FT                 EYLPFDPAIALLGLYPKEIMDTKTCTKIFIAALFVVAQNWKTRGCPSIGEW
FT                 LNKLWYMLVMEYYCAQRNNKVEKFHGDWNNLQEVMQSERSRTRRTLYTETN
FT                 TLWYNRT"
XX
SQ   Sequence 6356 BP; 2574 A; 1215 C; 1309 G; 1258 T; 0 other;
     ggacttccgg ttaagatggc ggcttagaga aagctgaagt tcagatctcc ggaaaaccct        60
     tcccgaccga tctcaaacta gaagctccta aggcgccgaa attcaaaacg atcaacagca       120
     cagaccctgg gaaccctcct cctggacctg gacccggttc aaaaggtacg gctcccctta       180
     aaagccagaa cccgagatcc ctcggacctc aggggtagga gcgcagagtc caaggctccc       240
     ggaagcggca gccgcgccgg gctcagagag cagggtctga ggaacaacaa ccctcagggt       300
     cttctaccca agtcccagtc cgggtgaaag ttactgcctg gggcttccgc tgcagagagc       360
     cggtcggtcc gggtgaaagt tactgcctgg ggcctccgct gcagagagct ggtcaaaaca       420
     acagcaaccc tcagggcggg caagacagcc tcacgggctg gatcctgcta tccaagtctc       480
     agtgaaagtc tgtgctctcg gagcttgggg aagcggcagc ccatcccccc gcaggccgac       540
     gaaacagcct cacggccagg gattctgaag gcaacttccg gaaatcgagc cagggggaga       600
     gtgtggcctc gtggtccgac ccttccattc cagttccagt gaggcatatt cagtttaacc       660
     cagggaacgc tcatagaacc aacatctgcc caggactaaa gcctctgatc accagacaaa       720
     gacaagaaaa gccaatcctc cacgttcaga gatgacaaac tccacagaag cacagaagcc       780
     ccaaaatacc aagaaaaata agaagaaagg ggcgactctg gacacattct atggagccaa       840
     aatacaaaat acagagcaga tagaagaaga tatacaagaa aattctccaa aatcttccaa       900
     aggaaataga aactctccac aaacccatga agaatttgaa tcagaaagga ccaaaaagat       960
     ggaagccctc tgggaggaaa agtgggaaat gatgcaaaag aaattcacgc atctacaaaa      1020
     ccagtttgac caaactgtaa aagaaaacca ggctttaaag caagaactaa taaagcaaag      1080
     ccaaaacacc aagaaattag aagagaacat aaaatatctc accgacaagg tgatagatct      1140
     ggaaaacagg gggagaagag aaaatttaag aataattgga ctcccagaaa agccagaaat      1200
     aaacaccaaa ctggacatgg tgatacaaga tataatcaaa gaaaattgcc cagagattct      1260
     agaacaaggg ggcaatacat ccactgacag agctcacaga acaccttcta cactaaaccc      1320
     ccaaaagaca actcccagga atgtaattgc caaattccaa agctatcaaa caaaagaaaa      1380
     aatcctacag gaagccagaa aaagacaatt tagatataaa ggaatgccaa tcagggtcac      1440
     acaagacctt gcaagttcta cgctgaatga tcgtaaggca tggaacatga tcttcagaaa      1500
     ggcaagagag ctgggtctcc aaccaagaat cagctaccca gcaaaactga ctatatactt      1560
     ccaagggaaa gtatgggcat tcaacaaaat agaagacttc caactttttg caaagaaaag      1620
     accagagctc tgtggaaagt ttgataccga aaatcaaaga gcaaggaata cctgaaaagg      1680
     taaatattaa ggaaagggga aaaatgttat cttcttttac tcaaactctc ttctataagg      1740
     actacattta tatcaaccta tgtatactaa tatgtgggga aaatgtaatg tataaatagg      1800
     gggtaaagaa agaccaaata gaataatggt tctcacacaa agattcacag gggaagggga      1860
     ggggaagaaa actcctataa gaaggagagg aagagagggg ggggggttta cttaaacctc      1920
     aatctcaggg aaatcaactc tgagagggaa aaacatccag atccattggg atcttgaatt      1980
     ctatcttacc caacaagggt aaggagaagg gaaaaccaag ggggggaggg ggagagggag      2040
     aacaaaaagg gagggaaaga gaggggggag ggggagggaa caaaaaggga gggactaaaa      2100
     agggaaacat caagggaggg gacaaggggg actgattcaa agtaaatcac tggactaaaa      2160
     ggtagagccg aagaagaaaa ggttagaatt agggaaggca atcaaaatgc cagggagtcc      2220
     acaaatgaca atcataactt tgaacgtgaa tgggatgaac tcacccataa aacgtagacg      2280
     aatagcagaa tggattagaa tccaaaaccc taccatatgt tgtcttcaag aaacacacat      2340
     gaggcgggtt gacacccaca aggtcagaat taaaggatgg agtaagacct tctgggcctc      2400
     aactgataga aagaaggcag gagtggtaat catgatatct gataaagcca atgcaaaaat      2460
     agacctgatc aaaagggata gggaaggtaa ttatattttg ttaaaaggga ctctagacaa      2520
     tgaggaaata tcattaatca acatgtatgc accaaataat atagcaccca aatttctaat      2580
     ggagaaacta ggagaattga aggaagaaat agacaataaa accatactag tgggagactt      2640
     aaaccaacca ttatcaaatt tagataaatc aaatcaaaaa ataaataaga aagaggtaaa      2700
     agaagtgaat gaaatcttag aaaaattaga attaatagac atatggagaa aaataaatag      2760
     ggataaaaag gaatacacct tcttctcagc accacatggc acattcacaa aaattgacca      2820
     tacattaggt cacagaaaca tagcacacaa atgcaaaaaa gcagaaataa tgaatgcagc      2880
     cttctcagat cacaaggcaa taaaaataat gattagtaat ggtacatgga aaaccaaatc      2940
     taaaaccaat tggaaattaa acaatatgat actccaaaac cgtttagcta aagaagaaat      3000
     catagaaaca attaataatt tcatcaagga aaatgacaat ggcgaaacat cctttcaaac      3060
     cttttgggat gcagccaaag cggtaatcag aggcaaattc atatccctga aagctcatat      3120
     taacaaacaa gggagagcag agatcaatca attggaaatg caattgaaaa aactcgaaag      3180
     cgatcaaatt aaaaaccccc agcagaaaac caaattagaa atcctaaaaa ttaagggaga      3240
     aattaataaa atcgaaagtg atagaactat tgatttaata aataagacaa gaagctggta      3300
     ctttgaaaaa acaaacaaaa tagacaaagt actggtcaat ctaattaaaa aaaggaagga      3360
     agaaaagcaa attcacagca ttaaagatga aaagggggac agcacctcca atgaggagga      3420
     aattaaggca atcattagaa attactttgc ccaattatat ggcaataaat acaccaattt      3480
     aggagaaatg gatgaatata tacaaaaata caaactgcct agactaacag aagaggaaat      3540
     agaattctta aataatccca tatcagaaat tgaaatccat caagccatca aagaacttcc      3600
     taagaaaaaa tccccagggc ctgatggatt cacctgtgaa ttctatcaaa cattcagaga      3660
     acagttaacc ccaatactat acaaactatt tgacataata agcaaagagg gagttctacc      3720
     aaactccttt tacgacacaa acatggtact gattccaaaa ccaggcaggt caaaaacaga      3780
     gaaagaaaac tatagaccaa tctccctaat gaatatagat gcaaaaattt taaataggat      3840
     actagcaaaa agactccagc aagtgatcag aaggatcatt caccatgatc aagtaggatt      3900
     cataccaggg atgcagggct ggttcaacat taggaaaacc atccacataa ttgaccacat      3960
     caacaagcaa actagcaaga accacatgat tatctcaata gatgcagaaa aagcctttga      4020
     taaaatacaa cacccattcc tattaaaaac actagaaagc ataggaatag aagggtcatt      4080
     cctaaaaata ataaacagta tatatctaaa accaacagct aatatcatct gcaatgggga      4140
     taaactagat gcattcccaa taagatcagg agtgaaacaa ggatgcccat tatcacctct      4200
     actatttgac attgtactag aaacactagc agtagcaatt agagaagata aagaaattga      4260
     aggcatcaga ataggcaagg aggagaccaa gttatcactc tttgcggatg acatgatggt      4320
     ctacttaaag aatcctagag attcaaccaa aaagctaatt gaaataatca acaactttag      4380
     caaagttgca ggatacaaaa taaacccaca taaatcatca gcttttctat atatctccaa      4440
     cacagctcag cagcaagaac tagaaagaga aatcccattc aaaatcacct tagacaaaat      4500
     aaaataccta ggaatctatc tcccaagaca aacacaggaa ctatatgaac acaactacaa      4560
     aacactcgcc acacaactaa aactagactt gaacaattgg aaaaacatta actgctcatg      4620
     gataggacga gccaatataa taaaaatgac catcctaccc aaacttattt atctatttag      4680
     tgccataccc attgaactac caaaatactt cttcactgat ttagaaaaaa ccataacaaa      4740
     gttcatttgg aagaacaaaa gatcaaggat atccagggaa ataatgaaaa aaaacacata      4800
     tgatgggggc cttgcagtcc cagacctcaa actatattac aaagcagcag tcatcaaaac      4860
     aatttggtac tggctaagaa acagaaagga agatcagtgg aatagactgg gggaaaacga      4920
     cctcagcaag acagtatacg ataaacccaa agatcccagc ttttgggaca aaaatccact      4980
     attcgataaa aactgctggg aaaattggaa gacagtgtgg gagagactag gaatagatca      5040
     acacctcaca ccctacacca agataaattc aaaatgggtg agtgacttaa acataaagaa      5100
     ggaaaccata agtaaattgg gtaaacacag aatagtatac atgtcagacc tttgggaggg      5160
     gaaaggcttt aaaaccaagc aagatataga aagaatcaca aaatgtaaaa taaataattt      5220
     tgactacatc aaactaaaaa gcttttgtac aaacaaaacc aatataacta aaatcagaag      5280
     ggaaacaaca aattgggaaa aaatcttcat agaaacctct gacaaaggtt taattactca      5340
     tatttataat gagctaaatc aattgtacaa aaaatcaagc cattctccaa ttgataaatg      5400
     ggcaagggaa atggataggc agttctcaga taaagaaatc aaaactatta acaagcacat      5460
     gaagaagtgt tctacatctc ttataatcag agagatgcaa atcaaaacaa ctctgaggta      5520
     tcacctcaca cctagcagat tggctaacat aacagcaaag gaaagtaatg aatgctggag      5580
     gggatgtggc aaagtaggga cattaattca ttgctggtgg agttgtgaac tgatccaacc      5640
     attctggagg gcaatttgga actatgccca aagggcgaca aaagaatatc taccctttga      5700
     cccagccata gcactgctgg gtctgtaccc caaagagata atggacacaa agacttgtac      5760
     aaaaatattc atagctgcgc tctttgtggt ggcccaaaac tggaaaacga ggggatgccc      5820
     atcaattggg gaatggctga acaaactgtg gtatatgttg gtgatggaat actattgtgc      5880
     tcaaaggaat aataaagtgg agaagttcca tggagactgg aacaacctcc aggaagtgat      5940
     gcagagcgag aggagcagaa ccaggagaac attgtacaca gagactaata cactgtggta      6000
     taatcgaacg taatggactt ctccattagg ggcggtgtaa tgtccctgaa caactttcag      6060
     ggatccagga gaaaaaaaac accattcata agcaaaggat aaactatggg agtggaaaca      6120
     ccgagaaaaa gcaactgcct gaatacagag gttgagggga catgacagag gatagacttt      6180
     aaatgaacac tctaatgcaa atactatcaa caaagcaatg ggttcaaatc aagaaaacat      6240
     ctaatgccca gtggacttac gcgtcggcta tggggggtgg gggggaggaa aagaaaatga      6300
     tctatgtctt taacgaataa tgcttggaaa tgatcaaata aaatatattt aaaaaa          6356
//
ID   CfERVF2     repbase; DNA   ; MAM   ; 7205 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   ERV1 Endogenous Retrovirus from dog.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae.
XX
RN   [1]
RP   1-7205
RA   Smit A.F.;
RT   "CfERVF2 - ERV1 Endogenous Retrovirus from dog.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   ORFs LTRs have 5 bp TSDs, ORFs encode ERV1 proteins (best
CC   matches CfERVF1, and outside carnivores HERVFH21, LTR46-int and
CC   HERVFH19), while the env ORF matches the ERVK type SRV_RN env
CC   best (though also some ERV1 env genes). 9% subst.
XX
SQ   Sequence 7205 BP; 1529 A; 2605 C; 1462 G; 1551 T; 58 other;
     tttggtgccg aaacccggga ggagatcgag gccccacgct ggtggggagc ctctctcctc        60
     tcaccaccag gaccttaact gaacccagcg cctggaaacg ccgggtaagt tccccgattc       120
     cgtgcctccg tccgggtggt cctgcctgaa gccgcggccg cgccagggca cctccaccga       180
     gccaccgggt ggctctccgc cggtccctgg ggatcaggag acgtcctcat cctcacggtg       240
     acctccgttt ctgtccgtga ccctgagctg caaacgggga cgcctgtttt cagtctctgg       300
     gttacccggc gggaatcatg ggaactgccc aatccaaatt tgaccccgaa actccgttgg       360
     gttgtctact ggccaatttc gaaactctgg ggctctcnca ggacctcaga aggcgccgcc       420
     ttattcatta ctgtacggtg gcctggcccc aatatcgcct agacaatcag tctcaatggc       480
     cccctgaggg tacttttgac taccaaattc tcacggacct ggacaatctc tgtagacgcc       540
     agggcaagtg gaccgaggtc ccncacgtgc aggctttctg ggacctccgc tctcgcccct       600
     ccctctgctc ccaatgctcc accactcagg tccttttggc gcgggcgccg ctccctccct       660
     cccttccacc tattccctca gctccaaaag cccccgaatc ctttccccct tcccctccct       720
     cggagtctcc tgagaccttg gcccgtccac ctactaaggg gacgccagcc ctcccccctc       780
     cctatccgga accccctgcc ccctctcctt ctcctcctgc ctcccaacca cacacctctt       840
     tacccgtttc tgacccccaa ccttcacccc ctacctcccc tccgatctcc acgcgcacaa       900
     gatcccacaa ggtctcctcc tcccctgacc tggcctgccc cctgcgagag gtggcgggag       960
     ctgaaggggt tgttcgggtc cacgctcctt tctcgctcca ggacctttcc caaattgaaa      1020
     agcggctggg ctcttactct gctaacccgg gaaactatat caaggaattc caatatttgg      1080
     cccaggcatg ggacttgact tggcatgatt tgcatgttgt ccagaccacc acccttacac      1140
     cggaggagag ggagcgtatt caggctgctg cccgagaaca cgccgaccag ggccattnga      1200
     ccgatgccgc tgtgccggtc ggtgctcggg cagttcccgc cgtggatccc ggacgggatt      1260
     atcaggctgg ccaggagggc cgccggcgcc gcgaccgcat ggcccattgt ctcatcgctg      1320
     gcacgcgggc ggcctctaac agggccgtca actatgataa actccgggaa gtcgttcaga      1380
     acccagatga aaaccctgca gttttcctta ataggctcac tgaggcctta acccagtaca      1440
     ctcgcctgga ccctgcctcc ccggccgggg ctactgtctt ggcgacccat tttatctctc      1500
     agtcctcccc cgatatccgt aaaaaattaa agaaggccga ggagggtcct caaactccca      1560
     ttcccgacct ggtgaaaatg gcatttaagg tctttaacac ccgagaggaa gcggctgaac      1620
     ttaagaggca ggctagactc cagcagaagg tccaactcca gacccaagcc ttggtggcag      1680
     ccctgcggcc ggcgggctcc gggagcccac agaaaggggg aaccaaccgc accccgcctg      1740
     gggcttgctt cagatgcggc accgagggac actgggcccg tcaatgtccc aatcccaagg      1800
     agccaacgcg gccatgccct caatgtcgaa tgatgggcca ctggaaatcc gactgccccg      1860
     gtctcggagg atcctcggcg cctccacgcg gaggaaaccc tgagccggta agtccagcct      1920
     tccaactact cggattggac gatgactgac ggggcccaga ctcggacacc cccctaaccc      1980
     aggccgagcc cagggtcctg ctccaggtag cgggtaagtc catctctttc ctgttggaca      2040
     cgggggcgac ctactctgtt ctgccttcct actcgggggc cagtttcccc tctccagtag      2100
     cggtggtggg aattgatggc acctcctcta ttccacggac taccccactc ctctcttgca      2160
     gcctggatgg gttccccttc tcacactcct tccttataat tccttcctgc ccagctcctc      2220
     tcctcggccg ggatatccta cacaaactca aggccaccat tcgtctttct ccctcaccca      2280
     ctgtttctac tcacctcctc ttacccttaa tttctcctga tccctcccca ccaccccatc      2340
     tccctctacc cgttaacccc caagtctggg acacctctaa accaattgtg gccactcacc      2400
     accccccagt aaaaatccag ttaaaagatc aaaccttctt tccttctcgn ccccaatttc      2460
     caatttcaga aactcaccga cggggnctta aacctattaa ttacagaccg acttcgccag      2520
     cagggcctcc ttatccccan cagctccccg ngcancaccc ccattctccc tgccaggaaa      2580
     ccttctggag cctatcgcct ggtacaaggt tnaagactcn tcaacgaggc tgctanccct      2640
     ctccacccgg tggtgcccaa cccatacgcc ccactttcna ntgttccctc caccgctact      2700
     cacttctcag ncttaggcct caaagatgcc ttcttgattc actgcccctc cacacccaga      2760
     ttcatacntt ctcttcgcct tcncatgggg agagcccgac acacatacct caggacaact      2820
     ggcctggacg gtcctgcctc agggactcca gggatagccc ccacctcttt ggccaggccc      2880
     tttctaggga tctccaacaa ngctctttca cagcanagca cactcctcca anangtcgat      2940
     gacctncccc tttgtaggcc ctcccnacct tcctcacagg aagacactgc tctcctcctc      3000
     agcttccttg gctctaaagg gtaccgggtc actccctcca gagcgcaact ttgcaccccc      3060
     acggttacct angctgggta tatccttaac ccctacacct cnaaaacgct cactggagac      3120
     cgcntccggg acctaccgca ncaccaggat ctccggccnc cccnctcccc gccgnagcgc      3180
     cgacggcntt ctctctttct tgggtctcgt gggtttcctc cggcactgga ttcccgactc      3240
     cgctctcctg gcacgacccc tccncagggc agccaaacna accccacggg ggccacngac      3300
     agacccctcc nccgtnaaac acctcgtcnc tccaaacngn gagactgcct tacttcgggg      3360
     cccgtttcag ctcttccaga ccccccaaaa cctccctact tattnactga tgagcgttcc      3420
     ggctcggccn ccggcctccc ggtacagcca acgggaccaa cgnagcggac acnggcgtac      3480
     ctctcnnaac agctagatgt cgccgctcag ggctggcaac catgtctcag agccctggct      3540
     ggggccgcct ccctgacaaa ggaggccctt anactcactc tgggtcaagg cccctcgccg      3600
     ttttctcctc tcaccgcctg ggacacagat ctactgagcc agaaacctgt ttctcatctg      3660
     gncccctcta gactccaact tnatcacctc ctcttcatcg aaaatcctga catctatcta      3720
     tcaacttctc ctcgtctaaa tcctgctacc ctcctaccta ccccctctac taacccagaa      3780
     ccctcccatt cctgccctca actcctggaa gagctgactc ctccacatcc aggactttcc      3840
     gatcaacccc tccctaaccc tgaccgaatn ctctttgtgg atggtagttc tctcatcgcc      3900
     ccggacggcc agagacacgc agcatacgcc gtcgttaccc tagacgccat cctagaggca      3960
     gttcccctcc ccctcgggac aagctctcag aaggcagaac ttanagctct caccagggct      4020
     cttcacctgt ccaaagggca acgagttacc atatacactg actccaaata tgcctccctc      4080
     atcacacata cacattctgt cctctggcaa gagcgagggt ttcttacaac caagggaacc      4140
     cccataatcn atgggcccct catttcaaaa ctactagagg ccctcagcct tcccactgaa      4200
     gtagccattg tccactgtca cggacaccaa tcctccaagg acccggtgtc ccggggcaac      4260
     aacaaagccg actccactgc ccgagccact gccttaggct cctcaccagc tcccctcctc      4320
     ttcctcaaca caccacattc cccctcttac acagacgagg aaactcagac actaaaaagg      4380
     atgggaggaa tagccggggg aaaaggctgg atcttcattc aaaagaaact cgctcttcca      4440
     aaccatttag ctcccatgat catttcagac atacatcaat ccctacacat tggtcccaag      4500
     gccttacacc agttcctaga accccttttc cactatccac atctccgaaa ggtnatcgga      4560
     gaggtgcatc agtcttgcaa aacctgctcc actgtaaacg ctcaaggggg aattcgcagg      4620
     ccgggaccca atcaccagct ccgcggccac caacctggcg aggactggca gcttgacttt      4680
     ncccacatgc cacgccataa atcctttcgc tacctattaa ccttagtgga cacctttaca      4740
     gggtggatag aggctttccc cacagctcgg gagacggcgg atgtggtggc caccatactc      4800
     atcgaacaca tcattccgag attcggcctc ccgcggaccc tacaatctga caacggcccg      4860
     gctttcatct ccagcatcac ccagcaagtc tccgagagcc taaatattac ctggaaactc      4920
     catatcccat atcaccccca gtcttcgggt aaggtagagc gggccaacgg ccttctcaag      4980
     gaacatctca ccaaacttac ccttgaaacc cgcctgtcct ggccaaccct cctcccactg      5040
     gctttaacaa ggctcagagc tacccctaga gggccgtcgg gtctaagtcc ctttgagctt      5100
     ctctacgggc ggcccttcct gctcactcaa aatcttccat catcacctcc tcctctccta      5160
     tcttacctac cttacctaac tcttctaaga gccctcctgc gggcccatgc ggattcagtc      5220
     acccctactc caggagaacc cacaccagat actccccaag ccctggcccc aggggatagt      5280
     gtcctgctaa aagaactaca cccaaaaact ttacagccta agtggactgg tccctatacg      5340
     gtggtcctta cgacccccac ggccgccaaa ctcataggac accacccgtg ggtacacgtc      5400
     tctaaattaa agcgagcccc ctcacaagat gtatggacgg cacaaccttt gggacctact      5460
     caaatacggc tttcgcgcca tcctcctcct cctggtccta cctcctagtc actccaccac      5520
     tgaccctggg tttaggtgga ggttttacat gacagaaacc tgggaccagg gaatcnggtc      5580
     tcgccttatt tctaccactg attgtcaacc actgggttgc caggctctca tcaatttctc      5640
     catcccaaat ttccagtcaa ttcctgtatc cagctctgat cctataatct gtttcaccta      5700
     tgatcagacc catcctacct gccaaaatta ctgggttgaa acctacggag gctgtcctta      5760
     tcgctactgt aatattcatc accttggcca cttctgtcgg gaccctttca ccggcacctt      5820
     tgcaaccagt gacccacgat gccgcttcta cagacaacac aataagtata tcctaactat      5880
     tccggaccct tgggattccc gctgggcgac gggggtaacc gcaaaattnt accgctggcc      5940
     tttttcctcc taccctaccg cctctctccg aatctataga acatacgtgc aggtctcact      6000
     tccacaaatc caanccgccc taagtaacca agctcacacc atacgtgcac aggaacaact      6060
     tctccaaacc cacctacagg ctaacccagc tcaggaccag ggccccttct cctggataaa      6120
     acttatccaa caaggcactt ccctcgccag cctttccggc atgggcaatc tgtcccactg      6180
     ttttatctgt gccgccttgg gcaaagcccc cctggtggcc gttcccctcc ccaatgcatt      6240
     taactgcacc aaccccacac ccacacctcc gggaccttct ccctctctcc atgacattcc      6300
     cttattcact gaccctctca accaccaatt ccctttctgt tattccaccc ctaactcttc      6360
     cctctgcaac gtcaccctgt caaacgttac ctctcatcac gcccctatcg gcggtttctt      6420
     ttggtgcaac ggcaccctnt ctaaatctct caatacctct gcctctctcc tctgtctgcc      6480
     tgtctccctg gttccgcgat taactatcta tagtcaggca gaagtagccc tcctcgccag      6540
     ccccccggaa aagcagaaac gagcgatctt tctcccacta gttatcgggg tctccctggc      6600
     ctcaaccctg gtggccacgg gattggggac gggggcctta atccactctg tagattccac      6660
     cagggaccta tctgaaaggc ttcaaatggc catcgaggcc tcggcagagt ctctggcttc      6720
     cctncaacgc cagataacct cggtggccca ggtggctctc cagaaccgac gcgccttgga      6780
     cctcctcacc gcagacaagg gcggagcctg catgtttctc aacgaagaat gctgttacta      6840
     catcaatgaa acaggtgtag ttgagaccaa tctccacacc ctcgccaaag ttcgtgagtc      6900
     tctccaaanc cggtaccacc ccggcggccc aactacaccc caatggtggc agaccccact      6960
     aaccacatgg ctcctccccc ttctaagccc actcctaatc atcggcatac tattaatggt      7020
     ggccccttgc gttctccgat tcatccagga acgaattcgc gaaatgtctc gggtatctgt      7080
     caaccaactc ctcctacacc cctactcctc gcctgcccac ttccgaggga ccccacgacg      7140
     ccccctacat cagcaggaag tagccagatc tgaaccgacg ccctataaca acaaaaggat      7200
     cggaa                                                                  7205
//
ID   SATIA_MM    repbase; DNA   ; MAM   ; 807 BP.
XX
AC   X02323;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Muntjak satellite IA sequence.
XX
KW   SAT; Satellite; Simple Repeat; MMSATIA; Repetitive sequence;
KW   SATIA_MM; satellite DNA.
XX
OS   Muntiacus muntjak vaginalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Cervidae;
OC   Muntiacinae; Muntiacus; Muntiacus muntjak.
XX
RN   [1]
RP   1-807
RA   Bogenberger M.J., Neumaier S.P., Fittler F.;
RT   "The Muntjak satellite IA sequence is composed of 31-base-pair
RT   internal repeats that are highly homologous to the 31-base-pair
RT   subrepeats of the bovine satellite 1.715.";
RL   Eur. J. Biochem 148, 55-59 (1985).
XX
DR   GenBank; X02323; Positions       1     807.
XX
SQ   Sequence 807 BP; 214 A; 231 C; 196 G; 166 T; 0 other;
     tcccagtggc aaaaggaaag ggaacctgcg tctgccgcct cacctcgaga ggttttccta        60
     tggccctttc aagccaagaa gagactcccg aggcgtccct cgcaaataga caggagtcct       120
     tacgtcactg aagcacaccg tgtttggaag ggccatcccc gccgtaactc gagaatatac       180
     cccaggttcc cgccgcaact cgagaaaaac gatgagactc ccccctcgcc gcgagttgag       240
     gcccgatttc actgcacagc atgcagagca attgcctgct ccccatcaaa cccgaaagga       300
     gccttgattt ccttgatggc atccttagat ggcatcctta gaaaccccag gtacactgtc       360
     tcaagtctag aggtatccta aagtcacttc accaaccaga aacagctcct gtattccgaa       420
     tcatctcgag ctgagagctg atttcctggc ttcaaatcaa gaggaatgcc aactgtccac       480
     aagcaccaca agaggaggct tctcgcagct gtaggtctgg ttgagggaag tttgaatttg       540
     cggcctccag tggaatcgac cccgagatgc cctgactcga aatcaggacg gaattcctgc       600
     agtgacttga gtgcaagctg gatttcatct cacaagatga agggatgtcg gaagcccctt       660
     gggagacact agataatgcc ctagcacaat gccctttctc gacaggcggc ctcccatcca       720
     ttggacagct tgagaggaac acggagttca atgattccaa aggacacgat gcctgactcc       780
     tctggaaaat ggacaggaat cccagga                                           807
//
ID   L2A         repbase; DNA   ; MAM   ; 3314 BP.
XX
AC   .
XX
DT   22-AUG-2000 (Rel. 5.07, Created)
DT   22-AUG-2000 (Rel. 5.07, Last updated, Version 1)
XX
DE   L2A (MIR2/LINE2) non-LTR retrotransposon - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; L2 family; L2A;
KW   LINE; LINE2; MIR2; MIR2/LINE2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   3265-3314
RA   Degen J.S., Davie W.E.;
RT   "Nucleotide sequence of the gene for human prothrombin..";
RL   Biochemistry 26, 6165-6177 (1987).
XX
RN   [2]
RP   3165-3314
RA   Smit A.F., Riggs D.A.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation..";
RL   Nucl. Acids. Res 23, 98-102 (1995).
XX
RN   [3]
RP   565-3314
RA   Smit A.F.;
RT   "L2A..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [4]
RP   1-3314
RA   Smit A.F.;
RT   "L2A..";
RL   Direct Submission to Repbase Update (1999).
XX
CC   [4] (Consensus)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
CC   This is a consensus sequence for LINE2 subfamily A. The MIR SINE
CC   shares the 3' terminal 50 bp and was co-amplified with LINE2. The
CC   5'
CC   end is probably still incomplete. The ORF from bp 189-2691
CC   encodes a
CC   product 59% similar (39% identical) to the
CC   reverse-transcriptase-like
CC   protein of a LINE-like element in pufferfish (GenBank acc#
CC   AAD19348).
CC   Note that, whereas L1 is A- and purine rich in the coding strand,
CC   L2
CC   is C- and pyrimidine (65%) rich.
CC   There may be more than 300,000 copies of LINE2 in our genome.
CC   LINE2
CC   spread before the mammalian radiation, and copies are only 65-75%
CC   similar to this consensus sequence.
XX
SQ   Sequence 3314 BP; 706 A; 1249 C; 420 G; 915 T; 24 other;
     ccctccgcaa gagtaaagag ggagccccaa aactcacccc tcccnnaccc ctcagcactc        60
     acagcctctc caccactatc tgccttgaga ccaccgggac taatctcatc atgcccttta       120
     tccctgttta tgtcagtcac cacaagaagc ccaagactcc caggtcatcc ctcacccccc       180
     acgcttgaat ccccatnagg ctctgtacat ctccttttct gaccccatct cccatccctc       240
     cccanctcct gaaacccttc cactgngccc tctggaactc acggtcmatc atcagcaaaa       300
     tcccccgtat cctcaacctc ttctctgaac gttcccttca ccttcttgct ctaacngaaa       360
     cctggctctc ccctgaggac actgcttccc ctgcagcctt ctcaagtggt ggccgttttc       420
     tctcccacan ccctcgtacc actgggcctg gaggtggggt aggtgtcctc cttgctcctc       480
     attgctgctt ccagaccatt ctccctccct cctccctaaa acaccccagc tttgaatctc       540
     atgtcatcag actacatcac ccgctacccc tccttgttgc agtcatctac ngacctccgg       600
     gtcactcccc ctcattcctt gaagatttta gctcctggct cactgtcact ctctccaaca       660
     ctactcctgt cntaattctt ggtgatttca atatccacat agatgatcct tccaataccc       720
     tggcctctca gttccttgac ctcctctcct ccaatgatct tgtcctccac cctacctcag       780
     ccactcactc ccatggtcat accctagacc ttgtcattac caataactgc aacccctcca       840
     taatctcaat ttcaagcatc ccactctctg accaccacct cctatctttc cagctcactc       900
     cctctagtac cctaactcca acaattcttc gaccccaccg ggacctccaa tccattgatc       960
     ctaccacctt ttcactgtcc ctcacccccc tnatgtcctc acttccctcc ttacccagct      1020
     taaattccat ggtcaatcat tataatcact cccttgcata taccctcaac tcccttgccc      1080
     ctctctcgct tcgtcntact cgcctggcaa aaccacaacc ctggttaaat ccaactctcc      1140
     gcctactccg cgcctgcacc cgtgcagctg aacgtggctg gagaaaaaca cacaaccatg      1200
     ctgactggtc tcgctttaaa ttcatgacca cgaacctcaa gtgggccctt aatgctgccc      1260
     ggcaatcata ctacatttcc ctagtccatt cactctccca ctctcctaga tnactatttc      1320
     acaccttctc ctctctcctc aaacctccaa cacctcctcc cctatcctca ctctcagctg      1380
     atgaccttgc ttcctatttc actgagaaaa twgaagcaat cagaagagaa cttccacana      1440
     ctcccaccac cacatctacc cacctacctg catctgtgcc cacatactct gccttccttc      1500
     ctgttactac ggatgaactg tccgtgctcc tatctaaggc caacccctcc acttgtgcac      1560
     tagatcccat cccctctcgc ctactcaagg acatcgctcc agcaattctc ccctctctct      1620
     cctgcatcat caatttttcc ctctctactg gatcattccc atcagcatac aaacatgctg      1680
     ttatttctcc catctttaaa aaacaaaaat tctcccttga ccccacttcc ccctccagct      1740
     accgccccat ttctctgctc ccctttacag caaaactcct caaaagagtt gtctatactc      1800
     gctgtctcca attcctctcc tcccattctc tcttaaaccc actccaatca ggctttcgtc      1860
     cccaccactc caccgaaact gctcttgtca aggtcaccaa tgacctccat gttgctaaat      1920
     ccaatggtca attctcagtc ctcatcttac ttgacctatc agcagcattt gacacagttg      1980
     atcactccct ccttcttgaa acactttctt cacttggctt ccaggacacc acactctctt      2040
     ggttttcctc ctacctcact ggccgctcct tctcagtctc ctttgctggt tcctcctcat      2100
     ctccccgacc tctnaacgtt ggagtgcccc agggctcagt ccttggacct cttctcttct      2160
     ctatctacac tcactccctt ggtgatctca tccagtctca tggctttaaa taccatctat      2220
     atgctgatga ctcccaaatt tatatctcca gcccagacct ctcccctgaa ctccagactc      2280
     gtatatccaa ctgcctactc gacatctcca cttggatgtc taataggcat ctcaaactta      2340
     acatgtccaa aactgaactc ctgatcttcc ccctcaaacc tgctcctccc acagtcttcc      2400
     ccatctcagt taatggcaac tccatccttc cagttgctca ggccaaaaac cttggagtca      2460
     tccttgactc ctctctttct ctcacacccc acatccaatc catcagcaaa tcctgttggc      2520
     tctaccttca aaatatatcc agaatccgac cacttctcac cacctccact gccaccaccc      2580
     tggtccaagc caccatcatc tctcgcctgg attactgcaa tagcctccta actggtctcc      2640
     ctgcttccac ccttgccccc ctncagtcta ttctcaacac agcagccaga gtgatccttt      2700
     taaaacataa gtcagatcat gtcactcctc tgctcaaaac cctccagtgg cttcccatct      2760
     cactcagagt aaaagccaaa gtccttacag tggcctacaa ggccctacat gatctggtcc      2820
     cccgttacct ctctgacctc atctcctacc actctccccc tcgctcactc cgctccagcc      2880
     acactggcct ccttgctgtt cctcgaacac gccaggcacg ctcctgcctc agggcctttg      2940
     cacttgctgt tccctctgcc tggaacgctc ttcccccaga tatccacgtg gctsgctccy      3000
     tcacctcmtt caggtctcwg ctcaaatgtc acctcctcag agaggccttc cctgaccacc      3060
     ctatctaaaa twgcacaccc tctcccccat catgcccatc tttcttaccc cgctttattt      3120
     ttcttcatag cacttatcac catctgacat actatatwat ttatttgttt gtttgtttat      3180
     tgtctcctcc actagaatgt aagctccatg agggcaggga ctttgtctgt tttgttcact      3240
     gctgtatccc cagcgcctag macagtgcct ggcacatagt aggcgctcaa taaatatttg      3300
     ttgaatgaat gaat                                                        3314
//
ID   SINE1A_SS   repbase; DNA   ; MAM   ; 131 BP.
XX
AC   .
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   SINE-like element from pig - a consensus.
XX
KW   SINE1; SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   SINE retrotransposon; SINE1A_SS; SINE1_SS.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RA   Kohany O., Jurka J.;
RT   "SINE1A_SS consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 84%.
XX
SQ   Sequence 131 BP; 29 A; 34 C; 40 G; 28 T; 0 other;
     gggagttctc ttgtggcaca gcaggttaag gatccagcgt tgtcactgca gtggcttggg        60
     tcgctgctgt ggcacgggtt caatccctgg cccaggaact tccacatgcc acgggcatgg       120
     ccaaaaaaaa a                                                            131
//
ID   CarLTR1A3_LTR repbase; DNA   ; MAM   ; 418 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-418
RA   Smit A.F.;
RT   "CarLTR1A3_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   (4 or 5 bp dups) 12-13% subst;.
XX
SQ   Sequence 418 BP; 119 A; 116 C; 73 G; 110 T; 0 other;
     tgatgtgggg aacaaaggca gaaggaaatg tagataaaat taaatttcct tataacctgc        60
     agcccactga caaatacttg aggcaggcag agtatgacat tcctccagga aactcccaac       120
     tgtcttaatg ttaatgcttt gctagaggga aaaacaacct tagcttgaca atagctaggc       180
     ctccaggatc ctgtgagtct tctttagcat atgaaagtcc ttttggaaac ttccctttgt       240
     ctttacctcc cccaactcca aagtatataa tcagccgctc ctcacaaccc cagtgcagct       300
     ctttctgccc acgggtcctg tccccgtgct ttaataaaac cacctttttg caccaaagac       360
     gtctcaagaa ttctttcttg gccgtcggct ccgaacccca acacttcaaa ccacatca         418
//
ID   CHESHIRE_A  repbase; DNA   ; MAM   ; 224 BP.
XX
AC   .
XX
DT   13-AUG-1998 (Rel. 3.07, Created)
DT   13-AUG-1998 (Rel. 3.07, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon; HAT superfamily - a consensus.
XX
KW   hAT; DNA transposon; Interspersed Repeat; CHESHIRE_A;
KW   DNA transposon fossil; hAT superfamily; MER58A.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1
RA   Kapitonov V.V., Jurka J.;
RT   "CHESHIRE_A..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [2]
RP   1-224
RA   Kapitonov V.V., Jurka J.;
RT   "CHESHIRE_A..";
RL   Direct Submission to Repbase Update (AUG-1998).
XX
CC   [2] (Consensus)
XX
CC   CHESHIRE_A is a nonautonomous derivate of CHASHIRE transposon.
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
CC   Original orientation [1] has been changed accordingly to the
CC   internal sequence [2].
XX
SQ   Sequence 224 BP; 57 A; 56 C; 51 G; 60 T; 0 other;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtaaat        60
     aaagttttat tggaacacag ccacgcccat tcgtttatat attgtctatg gctgcttttg       120
     cgctacaacg gcagagttga gtagttgcga cagagaccgt atggcccgca aagcctaaaa       180
     tatttactat ctggcccttt acagaaaaag tttgccgacc cctg                        224
//
ID   RTE-2_MD    repbase; DNA   ; MAM   ; 3258 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   RTE-2_MD, an RTE-like non-LTR retrotransposon from Monodelphis
DE   domestica - consensus sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-3258
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-3258
RA   Gentles A., Jurka J.;
RT   "RTE-2_MD, an RTE-like non-LTR retrotransposon from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(10), 330-330 (2005).
XX
CC   [2] (Consensus)
XX
CC   Partial consensus of RTE-like element 60% similar to the much
CC   more recently active RTE-1_MD. Copies are 18% diverged from the
CC   consensus.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1348..1848,1852..2322)
FT                 /product="RTE-2_MD_1p"
FT                 /note="partial reverse transcriptase."
FT                 /translation="SWRDGLNTSIVFSTDHHQFNAEAIDHIPQVEVNPSLA
FT                 KLPTEEEVLNAIRLLLCGKVPGADSIPAEIYKAGGPLLIQKLTEIFWVIWQ
FT                 EEVIPQEIKDASIVHLYKGKGNRLSCDNHRGVSLLVIAGKILARVLLNRLI
FT                 LHLEDGHLPESQCGFRKGQGMVDMVFAAQLQEKCQEQNRGLYTIFIDLTKA
FT                 FDTVSHEGLWKIMAKFGCLEKFISIVCQFHDGMLAWVLDNGQCSYAFPVTN
FT                 GVKQGCVLAPMLFSMMFSVMLSDTFNEDENGIKVSYYTDGKLFNLKRLQAK
FT                 TKVEGELVHDFLFTDDCALNAASETEMQQSMD"
XX
SQ   Sequence 3258 BP; 1003 A; 661 C; 746 G; 838 T; 10 other;
     aaacacacaa aaatttttgc aaagatgatt ccactcacca ttggtacatg gaatgtgyac        60
     acacttatgg acaacatgaa atccagtaga cctgaaagat gaacagctct tattgtgaga       120
     gaactcagca ggtatyacat ccaaatagca gccctgagtg aaacaaggct ggcaaatgaa       180
     ggccagctta ctraagttag agctggatac atatttttct ggagtggtca ccatgatgag       240
     gagcacyatg aagctggcat aggttttaca atcaaatcta atctagtcaa caagcttgta       300
     tgcctcccaa aaggagtgaa tgacaggctc atgacaatgt gattgccact tgcaggaaag       360
     tgccatacca ccatcatcag tgcatatgct cccaccatga tgaaccctga tgaggtcaaa       420
     gaaaaatttt atgaagacct ggagaccctc atcatcaatg tgccaaaaga ggacaagctt       480
     gtaattctgg gtgactttaa tgccagagta ggcacagact atcagacatg gcagggagtc       540
     ttgggaggaa tggagttaga aacagcaaya gcaatggtca cttactactg aagacttgtg       600
     tatctcatga ccttctcatc accaacactg tcttccattt acctaaatgc aataaaactt       660
     catggatgca cccttaaagc aaacattggc atttaataga ctatgtcatt gtaaggagaa       720
     gagacagaca ggatgtgaga gtgatgaagg taatgtgtgg tacagagtca tagacttatc       780
     ctctccaagc taaacattta cattcaacaa aagtggcccc aaggcaagat gactaccaga       840
     agacttaatg tcaacagatt agagtrcttc tccatgtgtg aacagtttgt tgctgacttg       900
     gagggaaagc tgagccaaca catagttggc aacagtggag cagaaaagga gtgggcagct       960
     ttcagagatt tggtgtacag cactacattt actcatctgg gccagaatac tcacaaacat      1020
     caggattggt ttgatgaaaa tgatggggaa attcagaagc tactaaatga aaaatgagaa      1080
     ctccacaggg tttaccagca ggatagttca tctatctcta agaaggcagc atttaactcc      1140
     atcaaaagta aagtgcaaat gaagcttaga gagatatgca ggattcttgg ctcagtaaga      1200
     aggcagatga aattcagttt tatactgata gtaacaaccc aaagtacttc tatgatgccc      1260
     tgaaggctat ttatgggcca aagacctatg gtgcatctca actactcagt actgatggag      1320
     ccacactgat cagtgataag gacatgatcc tggagagatg ggctgaacac ttccatagtg      1380
     ttctcaacag accatcatca attcaatgct gaagccattg accatatacc tcaggttgaa      1440
     gtcaatccct ctctagctaa acttccaact gaagaagagg ttttgaatgc cattaggctc      1500
     ctcttatgtg gcaaagtacc tggtgctgat tccattccag cagagattta caaggcaggg      1560
     ggtccactgc tcatacaaaa gctgactgaa atcttctggg ttatatggca agaggaggtt      1620
     atcccccagg agatcaagga tgcctccatt gtccatctct ataaaggaaa aggaaatagg      1680
     ttgtcctgtg acaatcacag gggtgtctct ctcttagtca ttgctggcaa gattcttgcc      1740
     agagtcctcc ttaataggct gatccttcac ctggaagatg gtcatctacc tgagagccag      1800
     tgtggcttca gaaagggcca aggaatggtt gatatggtgt ttgctgcctr acaactccag      1860
     gagaaatgcc aggagcagaa cagaggtctg tacacaatat tcattgatct gaccaaggcc      1920
     tttgatactg tcagtcatga gggcttgtgg aagatcatgg caaaatttgg ttgcctagag      1980
     aagttcatca gtattgtatg ccagttccat gatggcatgc ttgcatgggt tctggataat      2040
     ggacaatgct cttatgcttt cccagtcacc aatggagtga agcagggctg tgtgcttgct      2100
     cccatgcttt ttagcatgat gttttcagtg atgttgtcag ataccttcaa tgaggatgaa      2160
     aatggcatca aggtcagcta ctacactgat ggtaaattat ttaacttgaa aaggctacaa      2220
     gccaagacta aagtggaggg agagttggtg catgactttc tgttcacaga tgattgtgca      2280
     ctcaatgcag cctctgagac tgagatgcaa cagagtatgg attgattctc tgctacttgt      2340
     gctaattttg gcctgacaat taacaccaag aaaacagagg ttctccacca gccagcacta      2400
     caccatccat atatggaacc attggttaca gcaaatggag aaattttgaa tgctgtggat      2460
     aagttcactt accttggcag tatactttcc agggatgtac acatagatga tgaggttgat      2520
     gcatgcattg ccagagctag ctcagtgttt gggaggctct raaggaaagt gtgggagaga      2580
     agaggtatta ggctgcctac caaactgaag gtctacagag ctattgtgct gacctcattg      2640
     ttgtatgcct gtgaaacctg gacagtatac cagtaccatg ccaggaaaat tgaattactt      2700
     ccatttgaat tgtcttagga agattctgaa gatcacctgg caagatacgg tgacactgag      2760
     gtcctttctt aagctgaact gccaagcatt caaactctac tgcagagagc acaactctaa      2820
     tgggctggcc acattgttcg aatgccaaat atatatttgc ctaaaagact attttacaga      2880
     gaactcacac aaggcaagcr ctcacatgga ggtcagaaga agcaatacaa ggacactctc      2940
     aaggtctctc tgaagaactt tggtatcgat tgtgagacat gggagacact ggcacaggac      3000
     catccagcat ggcatgccca tcatcaaaga aggtgctgtg ctctatgagc aaagcagaat      3060
     tgcagtagct caaaagaaat rtgagatgca caaatttaga gacatctcca tcccaaatgt      3120
     tcatatgggc tatttgtgcc tgacctgtgg tagagccttc tgagctcata ttggtctgat      3180
     cagccacagt tagacacact gtacattgac cctaacatag tgatgtcatt ttggtcctct      3240
     ttgagtatga aggacaac                                                    3258
//
ID   ZOMBI_C     repbase; DNA   ; MAM   ; 333 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat, non-autonomous DNA
DE   transposon - a consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Non-autonomous;
KW   MER46; Mariner/Tc1; ZOMBI; ZOMBI_C;
KW   non-autonomous DNA transposon.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-333
RA   Jurka J., Kapitonov V.V.;
RT   "ZOMBI_C..";
RL   Direct Submission to Repbase Update (MAY-1998).
XX
CC   [1] (Consensus)
XX
CC   Subfamily of non-autonomous ZOMBI transposons.
CC   26 bp terminal inverted repeats, TA target site duplication.
CC   ZOMBI_C is 72% identical to ZOMBI_B.
CC   Individual copies are about 81% identical to the consensus.
XX
SQ   Sequence 333 BP; 109 A; 62 C; 52 G; 110 T; 0 other;
     caggtccaca atcccttatc tacaattcta aaatccaaaa agctctgaaa actaaaagtt        60
     tttttataat ttgaaactca tttggcagca aaacctgacc tgaactgata tgaggctatt       120
     tatagtcttt atttatccca cttagtgtga atattcatat atttcactgc agaaatatta       180
     atgtgtttga ttatagggtg ctgccccaga ccccactggg ggtgttatat aatatatagt       240
     atatgcacta tattaccttt ctaaaatcta aaaaattctg aattctgaaa cacatctggc       300
     cccaaggatt tcagataagg gattgtggac ctg                                    333
//
ID   MLT1B       repbase; DNA   ; MAM   ; 390 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1B subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; MER15; MER18;
KW   MLT1B; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1B retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 16%.
CC   Replaces MER15 (acc.# X59019) and MER18 (acc.# X59024).
XX
SQ   Sequence 390 BP; 123 A; 84 C; 92 G; 91 T; 0 other;
     tgttatgggc tgaattgtgt ccccccaaaa ttcatatgtt gaagtcctaa cccccagtac        60
     ctcagaatgt gactgtattt ggagataggg tctttaaaga ggtaattaag ttaaaatgag       120
     gtcattaggg tgggccctaa tccaatatga ctggtgtcct tataagaaga ggagattagg       180
     acacagacac acacagaggg aagaccatgt gaagacacag ggagaagacg gccatctaca       240
     agccaaggag agaggcctca gaagaaacca accctgccga caccttgatc tcggacttcc       300
     agcctccaga actgtgagaa aataaatttc tgttgtttaa gccacccagt ctgtggtact       360
     ttgttatggc agccctagca aactaataca                                        390
//
ID   MER28       repbase; DNA   ; MAM   ; 434 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   DNA transposon; Interspersed Repeat; MER28; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-434
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   Internal deletion product of Tigger2 element.
CC   24 bp terminal inverted repeats, TA target site.
XX
SQ   Sequence 434 BP; 115 A; 96 C; 80 G; 138 T; 5 other;
     cagttgaccc ttgaacaaca tgggtttgaa ctgcgtggrt ccacttatac gcggattttc        60
     ttccatctct gccaccctga gacagcaaga ccaacccctc ctcctcctca gcctactcaa       120
     cntgaagacg angaggatga agacctttat gatgatccac ttccacttaa tgaatagtaa       180
     atatattttc tcttccttat gattttctta ataacatttt cttttctcta gcttacttta       240
     ttgtaagaat acggtatata atacatataa catacaaaat atgtgttaat cgactgttta       300
     tgttatcggt aaggcttcca gtcaacagta ggctattagt agttaagttt tkggggagtc       360
     aaaagttata cgtggatttt tnactgcgcg gggggtcagc gcccctaacc cccgcgttgt       420
     tcaagggtca actg                                                         434
//
ID   L1_BT       repbase; DNA   ; MAM   ; 1161 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   L1 Non-LTR Retrotransposon from Bovidae.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Bovidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora.
XX
RN   [1]
RP   1-1161
RA   Smit A.F.;
RT   "L1_BT - L1 Non-LTR Retrotransposon from Bovidae.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1161 BP; 449 A; 203 C; 269 G; 240 T; 0 other;
     ccagaatatt ggaaataaaa gcaaaaataa acaaatggga cctaattaac cttaaaagct        60
     tctgcacatc aaaggaaact attagcaagg tgaaaagaca gccttcagaa tgggagaaaa       120
     taatagcaaa tgaagcaacc gacaaacaac taatctcaaa aatatacaag caactcctac       180
     agctcaactc cagaaaaata aacgacccaa tcaaaaaatg ggccaaagaa ctaaatagac       240
     atttctccaa aaaagacata cagatggcta acaaacacat gaaaagatgc tcaacatcac       300
     tcattatcag agaaatgcaa atcaaaccac tatgaggtac catttcacac cagtcagatt       360
     ggctgcgatc caaaagtcta caaataataa atgctggaga gggtgtggag aaaagggaac       420
     cctcttacac tgttggtggg aatgcaaact agtacagcca ctatggagaa cagtgtggag       480
     attccttaaa aaactggaaa tagaactgcc ttatgatcca gcaaccccac tgctgggcat       540
     acacactgag gaaaccagaa gggaaagaga cacgtgtacc ccaatgttca tcgcagcact       600
     gtttataata gccaggacat ggaagcaacc tagatgtcca tcagcagatg aatggataag       660
     aaagctgtgg tacatataca caatggagta ttactcagcc attaaaaaga atacatttga       720
     atcagttcta atgaggtgga tgaaactgga gcctattata cagagtgaag taagccagaa       780
     ggaaaaacat aaatacagta tactaacgca tatatatggg atttagaaag atggtaacaa       840
     taacccggtg tacgagacag caaaagagac actcatgtat agaacagtct tatggactct       900
     gtgggagagg gagagggtgg gaagatttgg gagaatggca atgaaacatg tgaaatatca       960
     tgtaggaacg agttgccagt ccaggttcga tgcatgatgc tggatgcttg gggctggagc      1020
     actgggcggc ccagagggat ggtatgggga gggaggaggg aggagggttc gggatgggga      1080
     acacatgtat acctgtggcg gattcatttt gatatttggc aaaactaata caattatgta      1140
     aagtttaaaa ataaaataaa a                                                1161
//
ID   ERE1        repbase; DNA   ; MAM   ; 230 BP.
XX
AC   D26566;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Repetitive element ERE-1.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; ECERE1; ERE-1;
KW   ERE1; short interspersed repetitive element; tRNA-Ser.
XX
OS   Equus caballus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Perissodactyla; Equidae; Equus.
XX
RN   [1]
RP   1-230
RA   Sakagami M., Ohshima K., Mukoyama H., Yasue H., Okada N.;
RT   "A novel tRNA species as an origin of short interspersed
RT   repetitive elements (SINEs):equine SINEs may have originated from
RT   tRNA-Ser.";
RL   J. Mol. Biol 239, 731-735 (1994).
XX
DR   GenBank; D26566; Positions      10     239.
XX
SQ   Sequence 230 BP; 68 A; 51 C; 67 G; 44 T; 0 other;
     gggggctggc ccgtggctga gtggttaagt tcgcgcactc cgctgcaagc ggcccagtgt        60
     ttcgttggtt cgaatcctgg aggtggacat ggcactgctc ggtcagaccc acgctgaggc       120
     agcgtcccac atgccacaac tagaaggacc cacaatgaag aatatacaac tatgtactgg       180
     ggggctttgg ggagaaagag gaaaaaataa aatctttaaa aaaaaaaaaa                  230
//
ID   SATII_OC    repbase; DNA   ; MAM   ; 586 BP.
XX
AC   AF498013; AF498014; AF498015; AY114136; AY114137;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Oryctolagus cuniculus monomeric satellite II - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SATII_OC; satellite DNA.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RA   Ekes C., Hadlaczky G., Cserpan I.;
RT   "Identification of two rabbit satellite DNA families.";
RL   Unpublished.
XX
RN   [2]
RA   Ekes C., Hadlaczky G., Cserpan I.;
RT   "Direct Submission to Genbank.";
RL   Direct Submission to Genbank (04-APR-2002)Institute of Genetics,
RL   Biological Research Center, Temesvari krt. 62., Szeged H-6701,
RL   Hungary.
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "SATII_OC Consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 92%.
XX
SQ   Sequence 586 BP; 194 A; 134 C; 104 G; 143 T; 11 other;
     aagcttcaaa cgcctatttg ttgtgttttt tatttcataa tggctactct gccyaaactc        60
     ttgtttgtat tgcgtcagaa tacaaaattt gggaaggaag aaggcaaaac caactcagac       120
     ccagaaaaca tttaggaaat tgccgctcaa gaaaccacaa atcggctgag gcacccaaaa       180
     caatgacagc aagccagaat tggagcargc caacagctgt gccctgattg aaaaagacca       240
     ttcctccsgt gycctgaact ccatattcca gcctcaaaac caaagctcac atcagaaaat       300
     tcattacaaa ccatgataaa taagaaaaat gagaaaaaag ccaaagaaat gcaagartcc       360
     wtaatgatat tgggcttgat ttagtcgcaa ggaaacmggc tgttyccgga ttcatccacc       420
     cctcccagct gactgcctgt ggaattctga ctgaattaac ctgaaaatcg cwgtgaaact       480
     cggtttggag gcaattaata tctgtcacct cagcmaaagt gttccatttc wttttccaaa       540
     acacaaaaac tcaccttggt cgtgttacct gtagatttct aagctt                      586
//
ID   MARINER1    repbase; DNA   ; MAM   ; 1274 BP.
XX
AC   L36092;
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   19-FEB-1997 (Rel. 2.01, Last updated, Version 1)
XX
DE   Mariner transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MARINER1;
KW   mariner transposon.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RA   Morgan T.G.;
RT   "Identification in the Human Genome of Mobile Elements Spread by
RT   DNA-mediated transposition.";
RL   J.Mol.Biol. 254, (1995).
XX
DR   GenBank; L36092; Positions  495294  497519.
XX
CC   30 bp terminal inverted repeats, TA target site.
XX
SQ   Sequence 1274 BP; 387 A; 264 C; 251 G; 351 T; 21 other;
     ttaggtcggt rcaaaagtaa ttrcggtttt tgcaytgttg gaatttgyca tttgatattg        60
     gaatacattc ttaaataaat gtggttatgt tatacatcat tttaatgggc atttctcgct       120
     ttacgttttt ttgctaatga cttattactt gctgtttatt tkrtgtttat tttagactat       180
     gnaaatgatg ttagacaaaa agcarattcg agcgattttc ttattcaagk tcaaamtgrr       240
     tcgtaaagcg gcggagacaa ctcgcaacat cagcaacgca tttggcccag gaactgctaa       300
     taaacataca gtgcagtggt ggttcaagaa gttttncaaa ggagacgaga gccttgaaga       360
     tgaggagtgt aatgacgggc catcagaagt tgacaacgac cagttgagag caatcatcga       420
     arycgatcct cttacaacta nacgagaagt tgctgaagaa ctcgacgttg accattctac       480
     ggtcgttcgg catttgaagc aaattggraa gnaaaaactc gataagtggg tgcctcataa       540
     agtgagcaaa actttttnaa attgtcattt taaagtgtca tctcttattc tatgcaataa       600
     caacgaacca tttcttgatc agattgtgac gtagaacgaa aagtggattt tatacgacaa       660
     ccggcgacga ccagctcagt ggttggaccg aaagaagctc caaagcactt cccaaagcca       720
     aacttgcacc aaaaaagtcg cggtcgcggt ctggtggtct gctgccagtg tgatccacca       780
     cagctttctg aatcctggca aaaccattac atctgagaag tatcttcagc aaattgatga       840
     gatgcaccaa aaactgcaat gcctgcacct ggcattggtc aacagaaagg gcccaattct       900
     tctccacgac aacgcccgac cgcacgtygc acaaccaacg cttcaaaagt tgaataaatt       960
     gggctacgaa cttttgcctc atccgccata ttcacctgac ctctcgccaa caaactacca      1020
     cttcttcaag catctcgtca actttttgca gggaaaacgc ttccacaacc agcaggatgc      1080
     agaaaatgct ttccaagagt tcgtcgaatc ccaaagcacg gatttttatg ctacaggaat      1140
     aaacaaactt atttctcgtt ggcaaaaatg tgttgattgt aatggttcct attttgatta      1200
     ataaagatgt gyttgagcct agttatgatt atgatttaat ggccaaaacc acaattactt      1260
     ttgcaccaac ctaa                                                        1274
//
ID   SINE_VV     repbase; DNA   ; MAM   ; 128 BP.
XX
AC   .
XX
DT   27-NOV-2001 (Rel. 6.1, Created)
DT   27-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Vicugna vicugna tRNA-derived SINE - a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE_VV.
XX
OS   Vicugna vicugna
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Tylopoda; Camelidae;
OC   Vicugna.
XX
RN   [1]
RA   Lin Z., Nomura O., Hayashi T., Wada Y., Yasue H.;
RT   "Characterization of a SINE species from vicuna and its
RT   distribution in animal species including the family Camelidae.";
RL   Mamm. Genome 12(4), 305-308 (2001).
XX
RN   [2]
RP   1-128
RA   Jurka J.;
RL   Direct Submission to Repbase Update (26-NOV-2001).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 128 BP; 42 A; 32 C; 25 G; 26 T; 3 other;
     ggggagggta tagctcangt ggtagagygc gtgcttagca tgcacgaggt cctgggttca        60
     atccccagta cctccattaa aaaantaaat aaataaataa acctaattac ctcccccccc       120
     cacaaaaa                                                                128
//
ID   CHESHIRE_B  repbase; DNA   ; MAM   ; 338 BP.
XX
AC   .
XX
DT   13-AUG-1998 (Rel. 3.07, Created)
DT   13-AUG-1998 (Rel. 3.07, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon; HAT superfamily - a consensus.
XX
KW   hAT; DNA transposon; Interspersed Repeat; CHESHIRE_B;
KW   DNA transposon fossil; hAT superfamily; MER58B.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1
RA   Kapitonov V.V., Jurka J.;
RT   "CHESHIRE_B..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [2]
RP   1-1
RA   Smit A.F.;
RT   "CHESHIRE_B..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [3]
RP   1-338
RA   Kapitonov V.V., Jurka J.;
RT   "CHESHIRE_B..";
RL   Direct Submission to Repbase Update (AUG-1998).
XX
CC   [3] (Consensus)
XX
CC   CHESHIRE_B is a nonautonomous derivate of CHASHIRE transposon.
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
CC   Original orientation [1] has been changed accordingly to the
CC   internal sequence [3].
XX
SQ   Sequence 338 BP; 101 A; 68 C; 70 G; 98 T; 1 other;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtactg        60
     cccgtaaact aagaatggtt tttacatttt taaatggttg gaagaaaaat caaaagaaga       120
     rtattttgtg acatgtgaaa attatatgaa attcaaattt cagtgtccat aaataaagtt       180
     ttattggaac acagccacgc ccattcgttt atatattgtc tatggctgct tttgcgctac       240
     aacggcagag ttgagtagtt gcgacagaga ccgtatggcc cgcaaagcct aaaatattta       300
     ctatctggcc ctttacagaa aaagtttgcc gacccctg                               338
//
ID   CarLTR2_LTR repbase; DNA   ; MAM   ; 578 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-578
RA   Smit A.F.;
RT   "CarLTR2_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   ( 22 elements ) Similarity to MER41 16-17% div Distant match to
CC   MER41(D).
XX
SQ   Sequence 578 BP; 137 A; 184 C; 115 G; 140 T; 2 other;
     tgagacaggg aaactgaagg actccataaa aatctgcttt ttgctccttt tcctgcttct        60
     attcttgcta ggacctgcac ccccacccca ctttacacat gcctcataat gcaaatagtg       120
     tatgtcctcc ttgtaaggga caaggagtta atgatttctc tagaatagat aacatctaag       180
     gaaggaccag gtgagaatga ccagacgaag ccatcatatg cgtattccag accaccggcg       240
     ctagacatct cgacgccaag accccctggc tccaaggaat aacacctggg ccctcgtctt       300
     tgttctaacc ggttcctgga tgcctgagag gacacgtaca ccagaccacn atcctcaata       360
     aaaaccccag accccgaaca aagacgagac tctctccttt cctttctgag tctcccagac       420
     actccgtctg tacctgcact ctctctatac cttcaataaa ctctgctttc acctcctgct       480
     ggctcgcgtt tgatttccat cctgcgcgna gccagggacc ctcttggctg gtcctgcggg       540
     accccctctg ggtcctcgga cccggcctgc cggcatca                               578
//
ID   BTLTR1      repbase; DNA   ; MAM   ; 1198 BP.
XX
AC   V00116;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Bovine repetitive element isolated from satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; BTLTR1; BTREP2;
KW   Repetitive sequence.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1198
RA   Streeck E.R.;
RT   "A multicopy insertion sequence in the bovine genome with
RT   structural homology to the long terminal repeats of
RT   retroviruses.";
RL   Nature 298, 767-769 (1982).
XX
DR   GenBank; V00116; Positions       1    1198.
XX
SQ   Sequence 1198 BP; 296 A; 280 C; 244 G; 378 T; 0 other;
     tgcgtgagcc ggcatattgc atattgagtg catattgcat attgcatatt gagtgcagca        60
     ctttccacag catcatcttt caggatctgg aatagctcca ctggaattct atcactgctg       120
     ggagccagtg aggaactccg cctatgataa aggttatgag gaaggaggct cggcatacgc       180
     aaaggcggga tcgagcttca ggagtccccc tggaaattct cgagcatata cccccaaaac       240
     cagagtctgc ctactttctg cttgtgcttt cacctaaacc tctgacttta cggggggctc       300
     tcccccacta cctctctctg aaaaaagagt tagcttacag ttccagttaa taattcctgg       360
     gtgtgacagt gtttaaccta caaactcctt tggaaatcct ctagcctgcc tgaataggtt       420
     ttttcggcca catgggattg ttcagagcct cccaactgtg agaggcagga gatgttctaa       480
     actgtctaaa cacagattct tttgagtagt tacaagattg attagaaatt gtattggtga       540
     atggtttttc acttgttggg ccattgtttg ctgctaagtt tccatatccc ttacctgctg       600
     tgtccctggc agtgtattga ttaatataat tggtgtaagt agtagcttta atgtttgtaa       660
     cctgggaccc ttgagttaat tctttttctt gttatagccc accacacctt tgctctgtag       720
     gaatgcaact ttatctaatg cttttttgga gggtggctcc tgaccaacca cctttagaga       780
     aaaataagtt ttctgaagaa aaggtcttaa aatgttaaca ggcctccggg ccagaagatg       840
     atgcaaatca cctaagcttt tgcatatgat aagtttgcag gaagaaagcc tggtttgctg       900
     caagactcga ccccttcccc cattatcctc tatgcataac ttaaggtata aaaactactt       960
     tgaaaaataa agtgcgggcc ttgttcaccg aaacttggtc tcaccatgtc gttctttctc      1020
     ttaccttctg gctgaattat tcagcctctt ttctccactg aatttcctca ctgagctatc      1080
     ctcattctat tactctttat atccttaatt aacatttaat taagcagtgg tttcctgatc      1140
     ttcgcctacg ccgtctctcc ttcgaatacc ctggatcagc cggggctggt ccccggca        1198
//
ID   MER34       repbase; DNA   ; MAM   ; 546 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 5)
XX
DE   Human medium reiteration frequency MER34 repetitive sequence - a
DE   consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR; MER34;
KW   MER4I-group.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Toth G., Jurka J.;
RT   "Repetitive DNA in and around translocation breakpoints of the
RT   Philadelphia chromosome..";
RL   Gene 140, 285-288 (1994).
XX
RN   [2]
RP   1-1
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
RN   [3]
RP   1-546
RA   Kapitonov V.V., Jurka J.;
RT   "MER34..";
RL   Direct Submission to Repbase Update (JUN-1998).
XX
CC   [3] (Consensus)
XX
CC   Putative LTR [3] of retroelement related to the MER4I-group;
CC   it has 4 bp target site duplications [3].
CC   MER34 elements share common fragments with MER39 and LTR29.
CC   Original orientation [1,2] has been changed accordingly to the
CC   internal sequence [3].
XX
SQ   Sequence 546 BP; 152 A; 128 C; 101 G; 157 T; 8 other;
     tawtgaagga gatcagaata tgccacccca aaatatgcca ctttggcata aggattattt        60
     tgagctaaag gcacttgaga aacagcagrt gcaagaagag cactctgacc ttcctctttt       120
     cttcctgaaa gcaggagata aaactcccat gtgaaagacg ttctctctat accaggagga       180
     aggaaacatt cttatcgtca gagacgggga gtcgaggccg agggaaatct gtacgaacaa       240
     accttgttaa actaacycty atcttcctag tcacttctcc acgatgaacc gccctagccc       300
     aaaccccttt gtcttgtcac gttttcacaa tttactactc tttgtccaac ctagtatawa       360
     agcgttcgac tctaaccgct tctttgggtc ttcatttcct tatgagggct cccatgtaca       420
     tgtaaaacat acttaaataa atttgtatgc ttttctcctg ttaatctgtc ttatgtcagt       480
     ttaattatcg ggcccagccg gaaactctaa gagggtagag gwaaaatttt tccttcyctn       540
     ccatgg                                                                  546
//
ID   ERV5_MD_LTR repbase; DNA   ; MAM   ; 507 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV5_MD, a class 2 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERV5_MD_I;
KW   ERV5_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-507
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-507
RA   Gentles A., Jurka J.;
RT   "ERV5_MD, a class 2 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 384-384 (2005).
XX
CC   [2] (Consensus)
XX
CC   The corresponding internal sequence is deposited as ERV5_MD_I.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
SQ   Sequence 507 BP; 128 A; 101 C; 106 G; 172 T; 0 other;
     tgtagtcgag gaatacctcc tcttttcttt atttgtattt gcttaagata aagttgtgga        60
     tttgcttgtc tttgcttcag acaaagatga ggattaacct ttacccatcc tgggaccaag       120
     gatggaacag taaacatgaa ggaagcagga taacatttat gaaaggcaaa ttgtgattag       180
     gtgggcgcct atccccttgt ctgcccctct tccccttgtt tgtatttgca ttaaacgaag       240
     gatgtgggtt aacctttgaa cacctgccta tccctggacc aaggttaggg tttctggaat       300
     gaagaatcat aaattcctgt gggttttgtc taagtagtct ttgcctataa aagttctgtg       360
     tgaagcaaat aaaattggca ctatttctct cttttcatat agtgtccatc tcttcttttg       420
     ttactcttca tttttcgtta ccccaaacag gatgtcacag gactggccga ccctgtggat       480
     gagtcttgta agccatagag tcttaca                                           507
//
ID   MVB2        repbase; DNA   ; MAM   ; 195 BP.
XX
AC   X52381;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Mink DNA containing B2-like repeat.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; MVB2;
KW   Repetitive element; tRNA related SINE.
XX
OS   Mustela vison
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Mustelidae; Mustelinae;
OC   Mustela.
XX
RN   [1]
RP   1-195
RA   Lavrentieva V.M.;
RT   "MVB2.";
RL   Direct Submission to Genbank (02-APR-1990)Lavrentieva M.V.,
RL   Institute of Cytology and Genetics, Pr. Lavrentieva, 10
RL   Novosibirsk 630090, USSR..
XX
RN   [2]
RP   1-195
RA   Lavrentieva V.M., Rivkin I.M., Shilov G.A., Kobetz L.M.,
RA   Rogozin B.I., Serov L.O.;
RT   "B2-like repetitive sequence of American mink genome.";
RL   Dokl. Akad. Nauk SSSR 307, 226-230 (1989).
XX
DR   GenBank; X52381; Positions      33     227.
XX
SQ   Sequence 195 BP; 36 A; 57 C; 47 G; 55 T; 0 other;
     ggtgcctggg tggctcagtg ggttaagccg ctgccttcag ccaggtcatg atctcggggt        60
     actgggatcg agtcccgcat cgggctctct gctcggcggg gagcctgcct tcctcctcct       120
     tctctctctg cctgcctctc tgcctacttg tgatctctct ctgtcaaata aataaaataa       180
     aatctttaaa aaaaa                                                        195
//
ID   BDDF1       repbase; DNA   ; MAM   ; 409 BP.
XX
AC   Z25528;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   5' end of BDDF repeat; repeat region DNA.
XX
KW   BDDF1; BTBDDF1; Repeat region.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-409
RA   Plucienniczak A.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (12-AUG-1993).
RL   PLUCIENNICZAK A., PP TERPOL, LABORATORY OF GENETIC ENGINEERING,
RL   P.O.W. 57, SIERADZ, POLAND, 98-200.
XX
RN   [2]
RP   1-409
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Bovine Alu-like sequences mediate transposition of a new
RT   site-specific retroelement.";
RL   Gene 152(2), 261-264 (1995).
XX
DR   GenBank; Z25528; Positions      61     469.
XX
SQ   Sequence 409 BP; 117 A; 100 C; 106 G; 86 T; 0 other;
     ggagaaggca atggcacccc actccagtac tcttgcctgg aaaatcccat ggacggagga        60
     ggagcctcct aggtcgcagt ccatggggtc gctaagagtc ggacacgact gaggcgactt       120
     gactttcact tttcactttc atgcattagt aaagctcgga ccccacgtat atcacttgga       180
     ggcttgtaaa atatgtaact tggtcacatc cttgcctaat ttcaatgaaa ctaggccatg       240
     ccatgtgggg ccacccagga cggacggaca ggtcatggtg gagaaagact gacagaatgt       300
     ggtccactgc agaggaaatg gcaaaccact gcatcattct tgccttgaga accccatagc       360
     agcgtgaaat gcaaaaagat aggatactga aagaggaact ccccaggta                   409
//
ID   L1A_OC      repbase; DNA   ; MAM   ; 6497 BP.
XX
AC   X15965;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Rabbit L1Oc5 repeat.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 interspersed repeat family; L1 repetitive sequence; L1A_OC;
KW   L1Oc5 repeat; OCL1A; Repetitive sequence.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RP   1-6497
RA   Demers W.G., Matunis J.M., Hardison C.R.;
RT   "The L1 family of long interspersed repetitive DNA in rabbits:
RT   sequence, copy number, conserved open reading frames, and
RT   similarity to keratin.";
RL   J. Mol. Evol 29, 3-19 (1989).
XX
DR   Genbank; X15965; Positions       1    6497.
XX
SQ   Sequence 6497 BP; 2596 A; 1247 C; 1237 G; 1417 T; 0 other;
     ggccgcaccc atctcaagcc tccaaggctc ctccaacagc aggcagtcca cttaacatgg        60
     acacagtata aaaaaaaaaa aaaaagaaaa aaaaaaaacg cacagtgaca caagaagaat       120
     taactatgcc gagtaacaaa cacagaaata gagggagcaa gatcaacgat gacactatga       180
     tgcctccaaa taagcaaaac accccaagcc aagagtatga agatgatgag atagaagaaa       240
     tgcaagatac ggatttcaaa aaatttatga taagaacatt tagaagtttt caaaagcaaa       300
     tccttgaact acagaaatcc ttaatggaca agattgaaaa tctctctcgt gaaaatgaaa       360
     ttttaaggaa gagtcaaaat gaaactcaga aactagtaga acaggaaagt gtaatagtga       420
     agagaaatca aaatgaaatg aagagctcaa tagatcaaat ggcaaacaca ttagaaagcc       480
     ttaaaaacag aatgggtgaa gcagaagaca gaatattgga cttagaagac agagcacagg       540
     aaagtataca gtcaaaccaa agaaaagaag aggaaattag aaatctaaaa aatattgttg       600
     ggaatctaca ggatactatt aaaaaaacca acattcgagt tctaggagtt cctgaaggca       660
     tggagagaga gaaaggattg gaaggccttt ttagtgagat actagcagag aactttccag       720
     gtttggagaa ggacagagat atcctagtac aggaagctca tagaaccccc aataaacatg       780
     accaaaagag atcctcacac gacacgtggt aattaaactt accacagtga aacataaaga       840
     aaagatccta aaatgtgcaa gagagaaaca tcagattact ctcagaggat ctccaatcag       900
     actcacagca gacttctcat cagaaaccct acaagctagg agggaatggc gagacatagc       960
     acaggtgcta agagagaaaa attgccagcc cagaatatta tatcctgcca agctctcatt      1020
     tgtgaatgaa ggtgaaataa agacctttca tagcaaacag aaattgaaag actttgtggc      1080
     cacttgtccg gccctgcaaa agatacttaa agatgtgcta cactcagaaa cacagaaaca      1140
     cggccatcaa tatgaaagaa gggaaaggaa gaacacctac cagtaaaaga gcatgggaag      1200
     ctcaaagcat atactagaaa atatttccgg gaaaatggca gggcaaagtc actacgtatc      1260
     aattgtcaca ttgaacatta atggtctgaa ttcttcagtt aaaagacacc gtttggatga      1320
     ctggctcaca gaacacaacc caactatttg ttgcctacaa gaaacacatc tctctaacaa      1380
     agaggcatgc agactgaaag tgaaaggttg gaaaaagata ttccatgcca acagaaacca      1440
     aaaaaagcag gtgtagccat attaatatca gacaaaataa actttaatac aaaaactgtt      1500
     aagagagaca aagagggaca ctatataatg attaagggtt caattcaaca ggaagatgta      1560
     actattataa atgtatatgc acctaattac agggcaccgg tctatttaaa agatatgtta      1620
     agggacttaa agggagactt agattccaat acaatagtac tgggggactt caatactcca      1680
     ctctcagaaa tagacagatc atccggacag aagatcaaca aggaaacagc agatttaatt      1740
     gacactattg cccaaatgga tctaacagat atctacagaa ctttcaaccc tacatctaca      1800
     gacttcacat tcttctcagc agcgcatggg accttctcta ggattgatca catactaggc      1860
     cataaagcaa gtctcagcaa atttaaaaga attagaatca taccatgcag cttctcagac      1920
     cacagtggga tgaagctgga aattagcaac tcaggaaacc caagaaagta tgcaaacaca      1980
     tggagactga acaacatgct cctgaatgaa cactgggtca ttcaagaaat caaaagagaa      2040
     atcaaaaact ttctggaagt aaatgaagac aacaacacaa catatcaaaa cttatgggat      2100
     acagcaaaag cagtattgag aggcaaattt atagcaatag gtgcctatat caagaaattg      2160
     gaaaggcacc aaataaatga gctttcagtg cacctcaagg acctagaaaa actgcagcaa      2220
     accaaaccca aatctagtag gagaagagaa ataattaaaa ccagagaaga aattaacagg      2280
     attgaatcaa aaaaaaaaaa aacattacaa aaaatcagcc aagcgagaag ctggtttttt      2340
     gaaaaaataa acaaaattga caccccattg gcccaactaa ctaaaaaaag aagagaaaag      2400
     acccaaatca ataaaatcag agatgaaaaa gtaaacgtaa caacagacac cacagaaata      2460
     aaaagaatca tcagaaatta ctacaaggac ctgtatgcca gcaaacagga aaacctatca      2520
     gaaatggata gattcctgga cacatgcaat ctaccaaaat tgaaccatga agacatcgaa      2580
     aacctaaata gacccataac tgaaacagaa attgaaacag taataaaggc cctcccaaca      2640
     aagaaaagcc caggaccaga tggattcact gctgaattct accagacatt taaagaagaa      2700
     ctaatcccat tattctcaaa ctattcagaa caatcgaaaa agagggaatc ctcccaaatt      2760
     ctttctatga agccagcatc accttaatcc ctaagccaga gaaagatgca ggactgaaag      2820
     aaaattacag accaatatcc ctgatgaaca tagatgcaaa aatcctcaat aaaattctgg      2880
     ccaatagaat acaacaacac atcaggaaaa tcatccaccc agaccaagtg ggattcatcc      2940
     ctggtatgca gggatggttc aatgttcgca aatcaatcaa tgtgattcac cacattaaca      3000
     gactgcagaa gaaaaaccat atggttatct caattgatgc agagaaagca tttgataaaa      3060
     ttcaacaccc tttcatgatg aaaactctaa gcaaattggg tatagaagga acattcctca      3120
     atataatcaa agcaatttat aaaaaaccca cagccagcat cctattgaat ggggaaaagt      3180
     tggaagcatt tccactaaaa tctggcacca ggcagggatg cccactctca ccactgctat      3240
     ttaacatagt tctggatgtt ttagccagag ccatcagaca agaaaaagaa atcaaaggaa      3300
     tacaaatcaa gaaggaagaa gtcaaactat ccctctttgc agacgatatg attctgtact      3360
     tagaggatcc aaagaactct actaagagac tattggaact catagaggag tttggcaaag      3420
     tggcaggata taaaatcaat gcacaaaaat caacagcctt tgtatacaca agcaatgcca      3480
     tggctgagaa agaactgcta agatcaatcc cattcacaat agctacaaaa acaatcaaat      3540
     accttggaat aaacttaacc aaggacgtta aagatctcta cgatgaaaat tacaaaacct      3600
     taaagaaaga aatagaagag gataccaaaa aatggaaaaa tcttccatgc tcatggattg      3660
     gaagatcaac atcatcaaaa tgtccattct cccaaaagca atttatagat tcaatgcaat      3720
     accaatcaag ataccaaaga cattcttcta tgatctagaa aaaatgatgc tgaaattcat      3780
     atggaggcac aagagacctc gaatagctaa agcaatcttg tacaacaaaa acaaagccgg      3840
     aggcatcaca ataccagact tcaggacata ctacagggca gtagttatca aaacagcatg      3900
     gtactggtac agaaacagat ggatagacca atggaacaga attgaaacac cagaaatcaa      3960
     tccaaacatc tacagccaac ttttatttga tcaaggatct aaaactaatt cctggagcaa      4020
     ggacagtcta ttcaataaat ggtgttggga aaactggatt tccacgtgca gaagcatgaa      4080
     gcaagacccc taccttacat ctcacacaaa aatccactca acatggatta aagacctaaa      4140
     tccacgacct gacaccatta agttattaga gaacattgga gaaacccttc aagatattgg      4200
     cacaggcaaa gaatttctgg aaaagacccg ggaggcacag gcagtcaaag ccaaaatcaa      4260
     ctattgggat tgcatcaaat tgagaagttt ctgtactgca aaagaaacag tcaggagagt      4320
     gaagagacaa ccaacagaat gggaaaaaat atttgcaaac tatgcaacag ataaagggtt      4380
     aataaccaga atctacaaag aaatcaagaa actccacaac atcaaaacaa acaacccact      4440
     taagagatgg accaaggacc tcaatagaca tttttcaaaa gaggaaatcc aaatggccaa      4500
     caggcacatg aaaaaatgtt caaggtcact agcaatcagg gaaatgcaaa tcaaaaccac      4560
     aatgaggttt cacctcaccc cggttagaat ggttcacatg cagaaatcta ccaacaacag      4620
     atgctggtga ggatgtgggg aaaaagggac actaacccac tgttggtggg aatgcaaact      4680
     ggtcaagccc ctatggaaat cagtctggag attcctcaga aacctgaata taaccctacc      4740
     gttcgaccca gccatcccac tccttggaat ttacccaaag gagtttaaat tgataaagaa      4800
     aaaagcggtc tgcaccctaa tgtttgttgc agcacaattc acaatagcca acacctggaa      4860
     ccaacctaaa tgcccatcaa tggtagactg gataaagaaa ttatgggata tgtattcttt      4920
     agaatactat accgcagtaa gaaacaacga aatccagtca tttgcaacaa aatggaggaa      4980
     tctggaacac atcatgctga gtgaagtaag ccagtcccaa agggacaaat accatatgtt      5040
     ctccctgatc ggtgacaact gactgaacac caaaaaggaa acctcctgaa gtgaaatgga      5100
     cactatgaga aatggtgact tgatcagcat agccctgact gctaatggac aacttaatac      5160
     attatccctc atagtatttt ttttgtctgt tctacttaat atgactggtt taattctgta      5220
     attatcacac agttattctt aagtgttgaa aattaactga aatgtgatcc ctgttaaaca      5280
     taagagtggc aataagagag ggaagagatg tataatttgg gacatgctca ggctgacttg      5340
     ccccaattgg tagagttgga aacataccag gggattccaa ttcaatccca tcaaggtggc      5400
     atgtgccaat gccatctcac tattccaagt gatcaatttc agttcacaat tgatcataat      5460
     gaaaggacta agagtcaaag ggagcacata aacaagtcta gtatctgcta acactaaccg      5520
     atagaataaa taaaggggag agtgatccaa catgggaagt gagatactca gcagactcat      5580
     agaatggcgg agtgtcctaa atagcactct ggcctcagaa tcagccctaa aggcactcgg      5640
     atctggctga aaagcccatg agagtatttc aggcatggaa agccaagaca ctctggcaaa      5700
     aagatctctg tgaatgagat cccagtggaa agaacaggtc ttcaaagagg gaggtgcctt      5760
     tctctgaagg gaggagagaa cctccacttt gactatgacc gtgtctaaac aagataagag      5820
     tcggagaact caaggggctt ccatagcctt ggaaactcat gactggtgca tagggagatt      5880
     actgatgcca taaacaggag tgtcaatttg taaagtcaac aacaggagtc actgtgcact      5940
     tactcctcat gtaggatctc tgtccttaat gtgctgtaca ctgaagctta atgctataac      6000
     gagtactcaa acagtatatt tcactttgtg tttctatggg ggtgcaaacg attgaaatct      6060
     ttacttaatg tacactaaac tgatcttctg taaaaaaaaa aagaaaagaa aaaaaaaaga      6120
     aattatcaat tcccaacttg actctcactg ggattaaaca tgacaatagg tctcatctga      6180
     tttcatcatc atttaaaaaa aaatcatcta ttatttttca ctttatgttt ctgtgtggga      6240
     gcaaactgtt gaaatcctta cttaaggtat actaagctga tcttctgcat attaagataa      6300
     taaaaatgaa tcttgatgtg aatggaaggg gagagggagt gggaaagggg agggttgtgg      6360
     gtgggaggga cggtatgggg gggaagccat tgtaacccat gagtcgtact ttggaaattt      6420
     atattcatta aataaaagat aaaaaaaaag aataaatgta aaataaatac aattttggag      6480
     aaaaaaaata tatcttt                                                     6497
//
ID   ERV9_MD_I   repbase; DNA   ; MAM   ; 7670 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV9_MD, class 1 ERV from Monodelphis domestica - consensus of
DE   internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV9_MD_I;
KW   RNaseH; integrase; reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-7670
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-7670
RA   Gentles A., Jurka J.;
RT   "ERV9_MD, a class 1 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 391-391 (2005).
XX
CC   [2] (Consensus)
XX
CC   This endogenous retroviral element has 793 bp LTRs that are
CC   deposited as ERV9_MD_LTR. Copies are ~90% similar to the
CC   consensus, and reconstruction of a 1460 aa ORF was possible,
CC   encoding a putative gag-pol. This consensus was reconstructed
CC   from the June 2005 release of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV9_MD_I_2p"
FT                 /translation="SQAHKIYSVTNGDRRNSENEAAVKNXRKXLGNGENSV
FT                 QESESVNDSHCNKARERQRQIKETEXEIKEIXSQIVNEIRDFDKXCIVTKQ
FT                 EKXVKEIKSFLENFFQCRVDNGIELCKRKRKKKSQELKQKFVTDTETHNFN
FT                 SLKVTVAKXENALKPFTDDLPPNLVNSVNSFMAQVPLENTSNLNPEADTFH
FT                 PAMSDIDKEKLTENEAXITFEHNNXIQSXGGDMTVKFEXGDGMAVLVTTKD
FT                 SVGANVLRGKGESSQSNXXDLGSCSNVVENTTSNVDFIGNESNQEELTXXH
FT                 IQLAEGSKDMSSNSVAINSLATHRPEPYVWIKVGKKNYKALLDTGASKSVL
FT                 KTCPGDTDIGGMVSVAGATGQIQQVPELKSTMVKLGPLTIDHTFLLIPSCP
FT                 DNLLGRDFLCKIQATLQCEKSGEIYLHLPKNSLKHYPLLYLEQLEEEPEKI
FT                 QVVTSMYDIPTDIPQGVFAKHQNDVGQIKSITPVRIEVREGIPPKIPQYKL
FT                 SREAREGITPIINSLLEQGILRPMVSEYNSPILAIKKNKLNEDGTPAWRFV
FT                 MDLRAVNNFIRKRHTVTPSPNDIITQIPAEARWYTVLDLSNAYFTIXLHPD
FT                 SQNIFAFQWGQTQLCYTRLVQGCCESASIFCQLLQRDLATITFKXSRLIHY
FT                 VDDLLLASPDPKTCLEDSKKLLIELYKRGHKVSKKKIQWVLPTVEYLGFVL
FT                 EGGTRKISNKRIADIQKLGIPRTKKELRAFLGVAGFSRQYIVGYSHISKCL
FT                 TDLTKKDIKEPLQLNKEHLHALSQLKGAILSAPALGIPDYKKEFHLYVHEA
FT                 KGIASGMLAQYFGLNLRAIAFYSSILDTVAQGMVHCLRSVVATALMVKKSY
FT                 DIVLGCKLHVYSAHQIEKLLXSQNMHSFTNARISQYEVILLGNDNITIHRC
FT                 APLNPATLIPDLPMGGEVLHDCDQIVELMHRPNEHLKDTPLIDPEIELYTD
FT                 GSSYVXDGRKFTGAAVVDNDKTLWHASLPSHVSTQGAELKALLMALELARG
FT                 KRANIFLDSQYAFSTVHWSSYIWKNRGYKTSAGKPIAYGNLIDHIISAVDF
FT                 PKEVAIIHCKAHTHGKDRISLGNDRADITSKYAARFGPHHVLNFSLIERHN
FT                 LTEAYDGEEIQSWKEQLGAKLIKGIWIAQGGKPILPKKLYQHLCTVIHAKG
FT                 HYRVQGILDTIQRYWTAPGITTNAIRTCQACETCRRYNQGHFKSVALGGRP
FT                 LSYMPFQCIQIDYINMPKDKGYKYALVIVDRLTRWVEACPSKKSDTATVVR
FT                 FLLKEIIPRHGIPDTIDSDKGSHFTSQVLQEIYKNLGIKCNYHSVYQPQSS
FT                 GQVEXMNKELKTQIGKLCSETHLKWTDVLPLALFNIRTRPRTDLHISPFEM
FT                 LYGQPLWHGRTVKPPYLSMLRGECVLHEYLKQIQRRIEELRKLGLLVQRIP
FT                 LDFSLHKIKPGDKVYVKNFNRESPTEPRWIGPTTVVMTTPTSIKVDQRDPW
FT                 FHASHVKLHHTHNIE"
XX
SQ   Sequence 7670 BP; 2735 A; 1306 C; 1530 G; 2021 T; 78 other;
     attacaattg gcacctcaaa gtctgactga accccacaat ccttttacag gcagagtagt        60
     aaaggaagaa agaaaaaatg ttcaracaag ttgtttgtgg agtggtggtc attgcagcca       120
     ttgcytgttt ttgggtctac cacatattgt atagcaraat gacccatatg rtagtggaaa       180
     ctattgatta tatwggcaac atracaatgt ctgttttgca gttgccattc caaaawgaac       240
     tggtactctg gcaagtcctg gctcaagtgt atgtgctctt tatggctgtc cttcagactc       300
     taacccaast gaagaagata tttagatttg tggttcccct taaggcagag aagattatgg       360
     ctgttgataa caacctagaa agcatgatta aggctgtgtt tgagcaattg attaaggaaa       420
     aagggctaga tctggttatg ggcaaggaca atgggcaaac agagaatgta cctcaggaaa       480
     atgaaggtga caatgagaac aagcctgttw gtgaacctga gaaaatctgt ccactaaaag       540
     aggtcactaa attatccagt aatgctggtg tgatacactc caaagcccat agacaattca       600
     ctccacagga acttgaatcc ataaagtgcc atttcccwaa atttgtagaa aatcctttca       660
     aatctcaaaa ggagttgaaa ygngctttca ggatctttga tccggatttt gaagatgttg       720
     agttcctatt gtcagaactg ttcagccccc atgaacagag gcaattcctg gagaagacaa       780
     gatctgayag caatttaact agctggccaa ctgtagaaca aagggtagat atggactttg       840
     ctaatcctac ttgcatgtcc tacctaagaa aatgcaggga ggatttgctt caggccataa       900
     aacaatgctg ttcaaaacct aatgcatggg ctaagtttga caagatcttg cagaataaag       960
     gggaacatcc tgccacatac atagactgtc tgtcagagat ggcagattca atcttaggtc      1020
     tagaagctga tagtgaagag tcwgctagcc atgtccatag gcaatttcta aggggttgca      1080
     cacctaattt gaaaactttt ttcaaacact atttccccaa gtatgattca gttactctga      1140
     ttgaattgag tgaggcagca acttacttac atgataataa ttcagaacaa agtaaacaag      1200
     ttcaggatct aaaagaaaag ttggaaagga cagagaataa tytkaaacaa aaggagattg      1260
     aagaaatcaa gaatctgaac acagttagga cttacacaac atctagttac aagaaaccta      1320
     gttacaagga aaaaccagtg cagagagaaa ctagggaatg tttcttttgy cacaggaaag      1380
     gtcacttgat tagaaattgc tttttaaaga agaaacatga gattaataac aagaacacac      1440
     aaaatgcaca aactaggtac aagaagtcca cttgttgttc acattgcaaa ttaaagtcct      1500
     camagcaagc tcnkgacttg catgaaatgc aaaatgcaat taactctgga gctaagccta      1560
     agtactctga tatggttagg aaagagttat gaagccaggc ccataagata tatagtgtga      1620
     caaatggaga tagaagaaat agtgagaatg aggctgcagt taaaaatart agaaaaaast      1680
     tgggaaatgg tgaaaattca gtgcaagaaa gtgaatctgt gaatgatagc cattgcaata      1740
     aagcaagaga aaggcagaga cagattaaag agacagaaay agaaataaaa gaaattayat      1800
     cacaaattgt aaatgagata agagactttg ataagarctg yatagtaacc aaacaggaaa      1860
     agantgtaaa ggaaatcaaa tcattcttag agaacttttt ccagtgtaga gtggataatg      1920
     ggattgaatt atgcaaaaga aaaagaaaga aaaagtcaca agaactcaag caaaagtttg      1980
     tgacagatac agagacacat aatttcaatt ccctaaaggt tactgttgct aaagawgaaa      2040
     atgctttaaa accattcaca gatgacctcc caccaaactt agttaattct gtaaatagct      2100
     ttatggcaca ggtaccctta gaaaatacat ctaatttgaa tccagaagct gataccttcc      2160
     atccagcaat gagtgatata gataaggaaa aattaactga aaatgaagct gamattactt      2220
     ttgaacacaa taatcmtatt caaagtartg gaggtgacat gacagttaaa tttgaawagg      2280
     gggatggaat ggcagtctta gtaacaacca aggattcagt tggtgccaac gttctaaggg      2340
     gcaaagggga atctagccaa agcaacwgct rtgatttagg ttcatgttcc aatgtagtag      2400
     agaatacaac ctcaaatgta gacttcatag gaaatgaatc aaatcaagaa gaattaactg      2460
     rgtyacacat acaactggca gagggtagca aagacatgag tagtaattca gtggcaataa      2520
     actctttagc tacacacagg ccagaaccat atgtatggat taaggtggga aagaaaaact      2580
     acaaggctct cttagatact ggtgcttcaa aatctgtcct aaagacatgt ccaggggata      2640
     ccgacatagg gggtatggtt tctgtagctg gagcaacggg acaaattcaa caggtccctg      2700
     agctcaaaag cactatggtt aaattgggtc ctctcaccat agatcatacc ttcttgttga      2760
     ttccatcatg cccagacaac cttttaggac gwgatttttt gtgyaagatt caggcaacat      2820
     tacaatgtga aaaatctggg gaaatttatt tgcatttacc caagaattca ctgaagcact      2880
     atccattgtt atacttagaa caacttgaag aagaacctga aaagattcaa gttgtaactt      2940
     ctatgtatga catacccaca gatataccac agggggtgtt tgcaaaacat caaaatgatg      3000
     tgggtcagat taaatcratt actcctgtta ggattgaggt cagggaagga ataccaccta      3060
     agataccaca atacaarttg agtagagaag caagagaagg gataacacct atcataaata      3120
     gtttgcttga gcaaggtata ttgagaccta tggtatctga atacaatagc ccaatattag      3180
     ctattaaaaa gaataagcta aatgaagatg gcactcctgc ctggagattt gtgatggatt      3240
     tgagggctgt gaataatttt ataaggaaaa gacacactgt aacaccatct ccaaatgata      3300
     ttataactca gatacctgca gaagctaggt ggtacacagt gttagacctg agcaatgctt      3360
     actttactat acygttgcac cctgattctc aaaatatttt tgctttccaa tggggacaaa      3420
     ctcagctgtg ctatactaga ttagtgcaag gatgttgcga gtctgcttca atattttgtc      3480
     aactgttgca aagagatcta gccaccataa ctttcaaayr tagcagattg atacactacg      3540
     tggatgattt gctgctagca tctcctgacc ctaaaacatg tttggaagat tcaaagaaat      3600
     tattgataga actttataag aggggacata aagtttctaa aaagaagatt caatgggtcc      3660
     ttccaacagt ggaatattta ggatttgtcc tggagggggg caccaggaaa atctctaata      3720
     aaaggatagc agacatacag aagctaggca tccctagaac taagaaagaa cttagagctt      3780
     ttctaggggt tgctggtttc tcraggcagt acatagtggg atattctcat atttccaagt      3840
     gcttaactga tttgacaaag aaagacatta aagaaccatt acaattgaat aaagaacatt      3900
     tacatgcttt gtcacagttg aaaggagcta ttctatcagc tccagctttg ggaatacctg      3960
     attataagaa ggaattccac ttgtatgtcc atgaagcaaa aggcatcgct tctggaatgt      4020
     tagcacagta ttttgggtta aatctgaggg ctattgcatt ttacagttct atccttgaca      4080
     cggttgcaca aggaatggtg cattgcctca ggagcgtagt agctacagct ctaatggtca      4140
     agaagtcata tgatatagta ctgggatgta aattgcatgt gtattctgca caccaaattg      4200
     aaaaactgtt acrgtcgcag aatatgcatt cattcaccaa tgcaagaata tcccagtatg      4260
     aagtcatttt gttaggcaat gataacatca caattcatag atgtgcacca ttgaacccag      4320
     caactctgat tcctgatttg ccaatgggtg gagaagtatt gcatgattgt gatcaaatag      4380
     tggaactcat gcataggcca aatgaacacc ttaaagatac acctcttaty gatccagaaa      4440
     tagagttata cacagatgga tcctcctatg ttygygatgg gagaaaattc acaggggcag      4500
     cggtagttga caatgacaaa acgctttggc atgcatcatt gccaagtcat gtcagcaccc      4560
     agggagccga gctcaaggct ctgctcatgg ccctagaatt agctagaggg aaaagagcta      4620
     atatttttct ggattcacaa tatgctttct ccactgtaca ttggtcatca tacatatgga      4680
     aaaacagagg gtataaaact tcagctggga aaccaattgc atatggcaat ctgatagatc      4740
     atattataag tgctgtagac tttcctaaag aggtggccat aatccattgt aaggcacaca      4800
     ctcatggaaa ggacagaata tccctaggga atgacagagc agacataaca tcaaagtacg      4860
     ctgctaggtt cggtccccac catgtgctga atttctctct gatcgaaagg cataatctca      4920
     ctgaagccta tgayggagaa gaaatacagt catggaaaga gcagctaggt gctaaactaa      4980
     tcaaaggcat ctggattgct caagggggta aacctattct ccctaaaaag ttatatcaac      5040
     atctatgcac cgtaattcat gcaaagggac attacagagt gcaagggatt ctggatacca      5100
     tacagagata ttggacagca ccaggaatta caacaaatgc cattagaact tgtcaggcat      5160
     gtgaaacatg cagaagatat aatcaaggac attttaagag tgttgcattg ggaggcagac      5220
     cactcagcta tatgcctttc cagtgtattc aaattgatta tatcaacatg cctaaagaca      5280
     agggatacaa atatgcattg gtgattgtgg atagactgac tagatgggtt gaagcatgtc      5340
     cgtccaagaa aagtgayact gctacrgtag tgagatttct attaaaggag attataccaa      5400
     gacatggcat tcccgatacc atagattcgg acaaggggtc ccacttcact tcccaggttc      5460
     tacaagaaat ctacaagaac ttggggatta agtgcaatta ccattcagtt tatcaacccc      5520
     aaagttccgg gcaggtcgag ygtatgaaca aagaattgaa aacacaaata ggtaaactct      5580
     gttcagaaac acacttaaaa tggacagatg ttttgcctct tgctttgttc aacattagaa      5640
     ccaggcctag gactgacctg catatatcac cttttgaaat gctatatggt cagcctcttt      5700
     ggcatggtag gacagtaaag ccaccttact tgtccatgtt aagaggggaa tgtgttcttc      5760
     atgaatactt aaaacagata caacgtagga ttgaagaact aaggaaactg ggtttgcttg      5820
     tgcaaagaat accactagat ttttcrttgc ataagataaa accaggtgat aaggtatatg      5880
     tcaagaactt taatagagaa tctcctacag aaccaagatg gattggacca actacggtcg      5940
     taatgacaac cccaacrtct ataaaggttg atcaaagaga tccatggttc catgcttcac      6000
     atgtgaaatt gcatcacacc cataatattg agtagcccta ggaaaataat tgataagcaa      6060
     taacagtccc tactgaaaac acaggaaagc acatgagagt acttgccacc agaatacaga      6120
     caagagagca ctgcacatgt traaatgata aaaggatagc acccctgaag taataagaaa      6180
     tacagccagt aaaacaaaaa gaaaaatgca tttgaaagat tagcagccat aaaaaaaaaa      6240
     attttataya aagtctctgc cagccacaca gtaacwgaac agaaagaaac aatgttatta      6300
     yaaatgaata cataattttc taaattctat ctccaagaaa taagtacagt aactatccaa      6360
     gaaaaattac agtaaccata taataaatct yctagtaaaa ggtgaaacaa caagaattag      6420
     caaacttnaa atcactattc ttaacaaaat cttgagaacc tatgcataat gctcacaccc      6480
     atccatgaaa aacacatgta cagcttactt gcaggcayga agatgtacat atgcaaatct      6540
     taccctcatg catgaagaaa acacatgtaa ttcttacttk cacacatgaa gattgataaa      6600
     ttmtgactra cattcatgaa gatttcawct tacttccatg caaatgtaaa tttcactctt      6660
     acatgcatgc acacataaaa acctsacttg catacatgtt cttcatgtgt tcctggttcc      6720
     tgattattcc agtggatcct gatttgaaga acacrtcttc aatcaagact ggaagatgaa      6780
     gamtggcatg ctgaccagac gaaggaccag agaggaagam agagtttcta caagcaacat      6840
     aaaaggacat ggaaggactt tggaactttg aaattttgga acttttgatc atgaggatat      6900
     gtaagartgy gtcatacatg ttaacatcac atatatgcat gcacattcta catagaatta      6960
     cattttagga agatatctca tggaatgggt aagtatacaa catgcatagt tgcataacaa      7020
     aaagacacac tgataaaaat ttctgtggaa aattcaaaca gaaaagatat ttcttttctg      7080
     catgagtttg cacagaaatt tagaatgatg tacatatgta aatctgtact aagtacaacc      7140
     tatgtacaca tgtaaatact aatttactaa caagctaact ttattagagt aatttattaa      7200
     tatattctaa ykactaacaa tagtgacagc ctagtgaatt tgttcaagtc ttaagaaagt      7260
     agagacatag aagttctkaa rtatagaagt tagattgcat tatgattgta ggttagcatt      7320
     tgttagtggt agaagaattt tcttagtgaa tttatagaca ttaggaaata ggacaattgc      7380
     atattctgaa tgttagtgaa attgttggaa tgatttgaaa aattgttaca ggatttgtta      7440
     tgtaaaacta tgttcatgta aatcccttac ctaaaccatt ttcctatacc caytcttagc      7500
     ttagcatcta ggtagayaga atagctaaga taagttagga ttttgttatt ttgggagggt      7560
     aagagaatat ttaagatagt acagagttaa gaatagatag atagaattat aataaaggta      7620
     agtatcattt aaaaatgcaa ggtgcatttt tttaraagaa aaggggggaa                 7670
//
ID   ERV10_MD_I  repbase; DNA   ; MAM   ; 9021 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV10_MD, a class 1 ERV from Monodelphis domestica - consensus of
DE   internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV10_MD_I;
KW   RNaseH; integrase; reverse transcriptase.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-9021
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-9021
RA   Gentles A., Jurka J.;
RT   "ERV10_MD class 1 endogenous retrovirus from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 345-345 (2005).
XX
CC   [2] (Consensus)
XX
CC   There are only two complete copies of this sequence in the
CC   genome, along with a number fragments that are 3 kb shorter, but
CC   >94% similar. The coding regions are fragmented. A 337 bp LTR is
CC   reported as ERV10_MD_LTR. This consensus was reconstructed from
CC   the June 2005 release of the 6.8X WGS sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV10_MD_I_1p"
FT                 /note="gag fragment."
FT                 /translation="ESNTCPPKTEGPTHAHPDLQGSHVVSVCQLLVHGDRY
FT                 GRHQKPYGALHPALCRILVGVKPKAPQDTGQMDARRPPPHMGPLPPPPRST
FT                 ATDIGSLPPLLLAAIPFLVITRTWFPIILILPLPLTLAAGNLNPRLDPYLN
FT                 LLDGTFLALNNTRPNLTSSCWLCLTPSSYLSGYGQNLAPSNLTILDPKSSN
FT                 QDSNCNWMDTTVGVTVEVEGRGLCVGQSNPTDQGTYTSLCATNMALGSLPA
FT                 NSFLRPPNGTRWVCYYSGLQQCVSVAYLSTGQDFCVAVVIIPRVLYHPEDE
FT                 IPGALEHATHRQKRAAVGLTIAAILGATGAATGIGALVYQQVGLQPVLASM
FT                 DSDIKRLEDSIKFLEQSHSSLAEVVLQNRRGLDLLFFKEGGLCAALGEECC
FT                 FYVNHSGVIRGNLATIRKNLEKRQRDRESNPWATLSSLGWFEFSPWLTSLI
FT                 VTIGGILLVILLLLIGGPPLVTLILNLLRRQVPLLLTQALPKGSQAQPPPA
FT                 MVITQQPRAPGTPSR"
XX
SQ   Sequence 9021 BP; 2068 A; 3026 C; 2156 G; 1755 T; 16 other;
     tatgggggct cgtccccagg gagtccagga accacagacg gagagcagga gacctacgcc        60
     gagcaggtaa gcctccggga cccctattgg cttttttgaa accgaaactg cggggttctg       120
     ggattgagtg tgtgagtgaa tgagagagcg tggcatactt tatggctgga ggaaaacccc       180
     gtgaaacgca tacaggcaaa gggtggcaca ctgtgctcct ggtcggggtt tatacgacac       240
     acctgtccta agcgtcacgg gtccatcccg ttccggggtg agggcttgcc cgcgactcgg       300
     ttgaactcca gacctgtttc tgagtgtgga cttggcggta ccgcggttct gtctccccag       360
     caggggccca gccgggaaac cgaggaagcg aatgccatcc cattcacccc tcccgctacc       420
     cctccccaac cctacccgct agtttcggtt tctaccaaat cttggttcga gtcctttcat       480
     agtgtcctga gttcgagtct cagctcgaca ctacgataaa cggggtgttg gatacgggaa       540
     gaggcgccct tccctcccaa cgcatacccc acaaaatcct gcaggtactg gccccaggtt       600
     cgagtcctgt tttggttgtg rggccacagt tttaggttca agtccttcag tgggtttgag       660
     tcccactcgt tgtggtacgc cggcgcaccg actgagggac gcctcactcg accgccggca       720
     catgggaaag cccaatttta accttaattt gtttgggcta ttcccccgcc gcaggaacac       780
     taactcggct gacggtcccc ttgaattctt tctcaccacg cgtggcctta tatctcttac       840
     cttcctttct ctccttatct gtcttctcat ctttcttctt actttcacta macaagaatg       900
     ggaaactctc aaagccagcc tatccccctg gacctggtcc tccamcattt tggggatttt       960
     aaaaataggg cggmaagcat aggmttagaa gtgaagaaag ggaaactcca aaccttcgtt      1020
     aatgtggaat ggcccacatt tggagtaggc tggccctttg ggggtacttg ggatagrgcc      1080
     gtatcatctc agccgtgagg gcaaggatcc tcctccctgg aaaggagggg caccctgacc      1140
     aaatgcctta catcctcaca tggcaatccc tagcccaaga tcccccgcct tggctccagc      1200
     cctacacgga cctgattcag gcctagtggc actcacccta gaccatacga gccggtccag      1260
     gccaccgctg gaggcaaacc ggatccggac accctcggca cccccagtcc tcccagcccc      1320
     tgaagagcct ctcttggatc ttcccctacc accccctccc tataatccac cagccccctt      1380
     tttcccccat cccccagggg aagcccaagc accacccctg ggaccaggct taccctctcc      1440
     tcccccagcc caccggacaa ggggacgcac tcccccgcag gaggaagccg cacaaccatc      1500
     ctccacggtg gccctccctg tccgggcagt gggacccatg gtcccgggag gaccattaat      1560
     gcaccaatac tggcccttca cctcctctga cttatataat tggaaacatc agaacccccc      1620
     tttttcggaa caccctcaga aacttataga cctcttggag tctgtcttct taacccacag      1680
     ccccacttgg gatgactgtc agcagctcct tcgcaccctt tttaccggcg aggagcgcga      1740
     cagaatccta gtagaagggc gtaagctgat tttgggagat gatggccgcc ccaccactga      1800
     caacgtgcgg cttgaggccg ccttcccctc taaccgacct gactgggact tctccacgga      1860
     acaaggtagg gagcgtcttc agtcctatcg ccagaatctc ctagcgggcc tccgtgcagc      1920
     agcacggaag cctactaatt tgaccaaaat tggggcagtt agacaagggc cagaggagac      1980
     cccggcagcc tttctagaac gattgcagaa agccttccgg atctactccc ccatggatcc      2040
     caccgccccc agcaatcaaa ccgccatttt actagccttt gttaaccagt cagcccctga      2100
     catccggaaa aagctccaaa gggtagatgc cttcacagca caatccctgg aggagctact      2160
     taaaggtggc agaaaaggtc tataactcta gggaaacccc cgaagagagg gctgaacggc      2220
     tcaggcagga agatattgct taggcaggaa cagagacaga aagagaccga agaacgggaa      2280
     ctcaagcatc tgcagcaacg ccagtccaga gaagaccggg cacatagaca aatgcttaag      2340
     gcccaacaag ataccacccg ggtcatattg gcagcagtaa cctaattcca gcccccacca      2400
     acccaggcaa acacctgact ccaggggayt cttgctatmt ctgtgggagg ccaggtcact      2460
     ggcaacgtga gtgccctcac aaaacctccg gcaccatgag gcaaggcgga ggaggccccc      2520
     acctatgaac aaccgacctg gtaggcaggc cctgtccttt agcgataggg actgatgggg      2580
     acgggactcg ggccccctcc ccgagccctg ggtaactgct catattgagg ggactgccgt      2640
     tcccatactt gtagacacgg gggcagaaca ctcagttctc aagcagacct tcggggatgt      2700
     cacctccaag tcctccttgg ttcaaggggt agccggctcc cgcccatacc cctggaccac      2760
     tgaacggact gtggaccttg gatcccacac cgtttcccat tcctttctgg tcatccctga      2820
     tagccccgck ccccttctgg gccgggacct cctacacaaa ctcggcgcct gtatacactt      2880
     ccaccaggac tcagtatcga tcacagatgc cgaagggact cccctcacca tccttacaat      2940
     ggccctccaa gatgagcacc gccttttctc cgcccccatc tcgatagaca ttcctccaca      3000
     catcagaccc tgggtagaag ccatacccag gagtctgggc agaagtttcc ggtgtggggc      3060
     tagcaatcca ccacgccccg gttgtgatcc ccttgaaggc cgggtccacm ccagtgcggg      3120
     ttaagcagta tcccatgccg ctagcagcac gacagggcat ccaaccacat attgagagcc      3180
     ttatgaaagc cgggatactt attccctgca agtccccatg gaataccccc ctcctgccag      3240
     tcaggaaacc mggatccggg gactaccgcc cagttcagga ccttcgggag gtcaacaagc      3300
     gagtggagga catccacccc actgtcccca acccctatac cctactcagc aatctacacc      3360
     cctcactcac ctggtatacc actctggact tgaaggatgc ctttttcaca ctgcccctgg      3420
     cccctgtaag ccaacccatt tttgcctttg agtggcgctc gcctgaaacc tcccaggtcg      3480
     tctcacagct gacctggacc agactccccc agggactgaa actcagcccg acactcttca      3540
     gcgacgcact agcgcacgat ctggaagaat tccgctccag ctacatccgg acgtgaccct      3600
     cttgcagtac gtagatgacc tcctcatcgc atcaccgtcc gaagagcaat gtaaagaagc      3660
     cactcgtgmg ctcttgcagt gcctccagga tgccggatac cgggtcagtg ccaagaaagc      3720
     ccacatagcg cggactgagg taacgtttct ggggtatcgc ctcaaggggg gcttccggtg      3780
     gctcacacca gcaatgaccc aatccatcct ggcaatcccc accccctcct ctccaaggaa      3840
     agtccgggaa ttcctcggca cggtaggata ttgccgccta tgggttcccg actttgccac      3900
     catagcgaac cccctctacc aggctgctag ggaatccaga gaatggacct ggacaccaga      3960
     aatggactca gcctttcgga rcctccgaac ggccatgctg aaggcaccag ccttagcctt      4020
     acccgaccct gagaagccct tcctcctctt tgtggatgaa aggcaagggg tggccaaagg      4080
     agtcctcacc cagaggctag gaccatggga caggccggtc gcttacttgt ccaaaaagat      4140
     ggacccggtt gcgtcagggt ggccagcgtg cctccgcata attgcggcag ttgccttact      4200
     ggtcaaagac gcagacaagc tgacccacgg ccaggcactg acgatagcca cgacccacgc      4260
     catagagacg gtcctacgac agcctccggt cagatggctc tcccattcca gactcaccca      4320
     ttaccagtcc ctgctcctca atgaacccca aatcaccttc aaggttacaa cagccctaaa      4380
     cccagccacc ctgctaccct cgggggatgg caacaccaag cctccactcc tgccaggaga      4440
     tactggtgga ggcgatctcg gccaggccag acctcaagga cacacctcta cccaacccag      4500
     aacttgttta ttttactgat gggagcagct tcatcactcc ctccggggcc agggtagcag      4560
     gggcagcagt agtcgatgat gaaggaaccg ttgtttgggc ggccaagctc ccggaaggga      4620
     cgtcagctca gcgagccgaa cttctcgcct tagaagcagc cttacgggcg gcaagaggga      4680
     aacgtgtaaa catttacaca gacagccgct atgcatttgc caccttgcac gttcatgccc      4740
     ccatttaccg cgagagggga tacgtaacat ccaccgggaa gccgatagca cacctacatg      4800
     acatccagga actgttaggg gccgtctggg aaccccgcca ggtctccgtt atacacacac      4860
     cwggccacca gaagggagac tcccacccgg cactgggaaa tagatgggcg gatgaggccg      4920
     ccaggaaggc agcaatgcgg gatcaagccc caatgccctc agtcctcacc ctaacctcat      4980
     cccccgatga cctcccgatc ccgacccctc cctcggaacc ggcccagtac tcagaggaag      5040
     accggatatg ggtaaaaggg aaacaagagg gggcagctcc gagggaccac gagrcattct      5100
     cccgggacaa ggagggcaac ctcctcttgc cccacttagc atcgctggct gcctgttggc      5160
     tacccacctc cactgcctca cccacttagg acaccgcaac ctccgggagc ttctccgcaa      5220
     ggggcggata aggttccgcg gcatggactc cttcctcgag gaacttgtcc acaagtgcac      5280
     cacctgccag cttgtacagc ctgggaaacc aaccccagcc cccggaaccc gcctgcgagg      5340
     aacgcgaccc tgcgagcatt gggagctcga cttcacagag gtaaaaccag ggaaattcgg      5400
     gtaccggtac ctccttgtca tgatcgacac cttcacagga tggccagaag ccttccctac      5460
     aaaaactgaa accgcccagg tagtggccaa acacttccta gaagacatca tccccaggta      5520
     cgggttgccc gcttccctag gatcggacaa cggtccggcc tttgtcagcc gaaccattca      5580
     gctcttggcg aaaggcttgg gggtaaattg gaaattgcat tgtgagtata ggccccaaag      5640
     ttcagggcaa gtggagagaa tgaatcggac cctaaaagag tttcttacta aactcacctg      5700
     ggagactggc cgggactggg tgaccctcct tccccttgcc ctttttaaag cccgtaatac      5760
     accaggcccc ctatccctca ccccttacga aatcctttat ggctccctac cccctatact      5820
     cccctccaca ccgtcccccg agaagacacc tccccacctt cgagaatttg ttctctccct      5880
     gtcccagata catacggacc tgtggccacg tcttcgcgcc aggttccagc cgccccctgc      5940
     tgagccacac aaactccagc caggcgactg ggtgctggtc aagagacatc ggaaggaaac      6000
     cctccaaccc aggtggaagg gaccgtatgt gatcttgctg actaccccct cagctatcaa      6060
     ggtagacggg ataggcccct ggatccacca ctcgcacgct agaccaaccg cagcaccgaa      6120
     cccagactgg caagccaaga tccaccctca caatcccctg aagctgacgc ttagccgaac      6180
     ctaatggctg ggaggctcta cctcctctcg ttaaccatag ccctcctcct ccgtaacatt      6240
     gcattcacct ccccatccct gacgcagtgc ccagagggat acactctcat acgcagtcga      6300
     gaccacggct caagttgcgc attgtggtgc agcatccgga actccgtaaa acttgttcgc      6360
     tacccagaag tatgcccccc cttaatcccc tggaccccct tccccaatgc ttcctgcttg      6420
     gcctgggaca cgggaggttg cgtctcctgg gtggggcctg ccgagaccac cgttcctgcc      6480
     gagaccaccg ttcctgcgag accaccggtc gagaccaccg ttcctgccga gaccaccgtt      6540
     cctgccgaga ccaccgttcc tgccgagacc accgttcctg ccgagaccac cgttcctgcc      6600
     gagaccaccg ttcctgccga gaccaccgct cctgccgaga ccaccgttcc tgtcgagacc      6660
     accgttcctg ccgagaccac cgttcctgtc gagaccaccg ttcctgccga gaccaccgtt      6720
     cctgycgaga ccaccgttcc tgcctgttca actggtcggc gccattatcc ccattgaggt      6780
     caacacccct gcccttggaa ccgtcaccgc gcctaccatc gcgacctacg gcacccccgt      6840
     acccgaacct tccacccgaa ccagaccacg gagggacgcg aacccccaca ggctggtcac      6900
     ttggacctta acgtgcctat atgtttatta ccggccagcc gggtggacca ccacccatac      6960
     caagtgggtc acccttgcca ccatcaccac accactgacc ccgaccttta caatcgaggt      7020
     gtgcaaacta ttcccctatg gaatcagcgg acccaagggc cccccggccc aagggccccc      7080
     catgtaacca gtggggcgcc ggcgggtcat tttacgtatg ccctagttac aacccggaaa      7140
     agccttattg caattcccct ggccagtttt actgtcatca ctggggctgc gaaactgcag      7200
     tagcgggcga tagtacctcc tgggccccac cagaacagga cccctttatc agacttgcct      7260
     gtcacccctc accccaccag tgtacccacc tcaactttac ggtcctccaa ccgacgtccg      7320
     ggacctggtt gcatggacga acttggggca tcaggaaata tgcaaagtgg ggaagagaca      7380
     ttgggaccac cttcaggatt acaaaaagac cggtcaccac ctctcacagc atagggccac      7440
     tgcagagtca gccccggcaa ccaaagccca agattaggct taggaaagca acacctgccc      7500
     ccccaaaacg gagggaccta cccacgccca ccccgacctg cagggtagtc acgtggtatc      7560
     agtatgccag ctcctcgtgc acggggaccg ctatggccgt catcagaaac cttacggggc      7620
     attacatcca gccctatgca ggatcctcgt cggagtcaag ccaaaggctc ctcaagatac      7680
     tggccaaatg gatgcccgac gccccccccc ccatatggga cccctacccc cccccccgag      7740
     gtccaccgcc acggatattg ggtccctacc ccctctgctc ctcgcggcta tccccttcct      7800
     tgtcataacc aggacctggt ttccgatcat cctgatactt cccttacccc tcaccctcgc      7860
     ggctggtaat ttgaacccca gactggaccc gtacctcaat ttactcgatg gtaccttcct      7920
     agccctgaat aacacccggc caaatctcac ttcctcctgc tggctgtgcc ttaccccatc      7980
     ctcgtacctc tcggggtatg gccaaaacct ggccccctcc aacctaacca tactcgaccc      8040
     aaaaagctcc aatcaagatt ctaattgcaa ttggatggac accaccgtcg gggtaactgt      8100
     ggaagtggaa ggaagaggac tctgtgtggg ccaatccaac cccaccgacc aggggaccta      8160
     cacctccctc tgcgccacca acatggcctt gggttcttta cctgccaact catttctccg      8220
     acctcccaac ggtacgcgat gggtatgtta ttattccgga ctacaacaat gtgtctccgt      8280
     cgcatacctg agcacgggcc aggatttctg cgtagcagtc gttattatcc ctagagtcct      8340
     ttaccaccca gaggacgaga tccccggggc cctggaacat gcaacccacc gccagaaaag      8400
     ggcagccgta ggcctgacta tagcagctat cttaggggca acaggagcgg ccacaggaat      8460
     aggggccctc gtctaccaac aagttgggtt acaacccgtc ctggcctcaa tggatagcga      8520
     cattaagcgc cttgaggact ccattaagtt tctagaacag tcacacagct ccctagccga      8580
     agtagtgctg cagaatagac ggggactgga cctcctcttc tttaaggaag gaggcctctg      8640
     tgccgcattg ggggaagaat gctgttttta tgttaatcac tctggagtga ttcgtggtaa      8700
     cttagccacc atcaggaaga accttgaaaa gaggcagaga gatagagagt ctaacccgtg      8760
     ggctacactg tcttcccttg gatggttcga gttctcccca tggctaacca gcctcattgt      8820
     cacgatcgga ggcatcctac tcgtcatcct actcctactt attgggggtc cacccctggt      8880
     caccctgata ctcaacctcc ttagaagaca ggtaccacta ctcctaacgc aggcactgcc      8940
     caaaggttca caggcccaac cacccccagc catggtaatc acccaacaac cacgggcccc      9000
     agggactcca agccgctgaa g                                                9021
//
ID   MER112      repbase; DNA   ; MAM   ; 281 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Interspersed repetitive element MER112.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER112.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-281
RA   Jurka J.;
RT   "MER112..";
RL   Direct Submission to Repbase Update (FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   Unclassified. Putative non-autonomous DNA transposon.
CC   Present in human & other mammals; approximately 1000 copies
CC   per haploid genome.
XX
SQ   Sequence 281 BP; 98 A; 56 C; 27 G; 98 T; 2 other;
     tccagaccag tggctttcaa actttttttg actatgaccc acagtaagaa atacatttta        60
     catnatgacc cagtacacac atacatatat ataactgaaa caaaagtttc ataaaacaat       120
     acttaccctt actatatgta atgcactctg atattttcta ttctattcta ttctatttta       180
     ttttttttaa aaaaaaatgc tggttataac ccactaaatt gatttcataa cccactaatt       240
     tttgggtcac racctgcagt ttgaaaaaca ctgctctaga a                           281
//
ID   MER68_I     repbase; DNA   ; MAM   ; 2990 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Internal portion of ERV3 Endogenous Retrovirus from placental
DE   mammals.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; HERVL68;
KW   LTR retrotransposon; MER68_I.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2990
RA   Smit A.F.;
RT   "MER68_I - ERV3 Endogenous Retrovirus from placental mammals..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   first 230 bp and MER68 LTRs are ERV1ish.
XX
SQ   Sequence 2990 BP; 770 A; 635 C; 761 G; 792 T; 32 other;
     gttggtgtca gaagtgggat tcgctagaac gaccctgact cactgaaata tggcnaaagc        60
     actgtttggg aaaaaggaag aatgagggag agtggatgac aaaaccttga tgcctgggtg       120
     gctatggagt tatccatggt atgaaacagc agctgagctg ctgtctgttg tgagaggtaa       180
     aagttacccg tggaatttna aaatgataga tccaaccccg ggagagttgg ctcnctggat       240
     cccctggctg ctttcggcnn tgctggctaa agtgaggggg aaaagcacag cccgggtgat       300
     gcctttggtt tttgttctct cctccaggtg ggaggagaaa gggcccaaac attcccaaag       360
     gtgagctttg ggtgggccaa aaatgntaaa agtttgtgtt gctctctcct ccaagtggga       420
     ggaaaaaggt taaatcagtt cccagggctg gagcaaagct ttggataaan cagaggagga       480
     gaaaaagtgg ggaggggcgg ccaaaaccac tccagccttt cttcagccca gctgctgctg       540
     cagctgctca accccctcct ttccctncaa ccttcatctc cgacagcngt aatgttaacc       600
     ctgtaaatgc tgaatttact gctaggggtt tgagtaaact tgcaatgaga aaaaaaaagg       660
     aaatttaaaa tggctttgtg ttttgtggct attgcatctg gatgtatgat aaaaattgat       720
     gtaaaatgtt atatgcttgt aatttcataa atgctagagg gatcatcccg atcgggaaag       780
     ctgcaaagaa aaantgttag tgggaacaca actcccttgc tttttgccgc cggtgggcgg       840
     attggaattt aaactctttg agtattggaa acagaacaag tctccgtaan tgatgatttt       900
     tgctatgatt tttgcctatt ggagcctctg gaaaaaggga gacaacatga aaagagaggc       960
     aatctccaga tggagataca cttttggagt tttaaaaagc agtttttagt ttgctaatga      1020
     gctcttgctg aaatcggatg tctgaccctt agaggctgat gattttccgg cctgatgtgc      1080
     atgatttttg agngggtcag tttggactct aagactgaca aggtaaaaag gccttaggaa      1140
     agccttgctt gtcacttgga cttggaacac agctgtctgg ccctgcagca tctcagcttt      1200
     nctgctgccg aagaaaagcc tctggctttt ttggaatcct gaantcacag atcctaattg      1260
     cctggacctg actctaagct aaaacctgat actgtctgct ntgggctgtt tcagcctcag      1320
     nacgagctgt gctgaactga aagcaggcat agctcgactc aatgaacagg acttngactc      1380
     tgggaccgtt gcagatttag gacacccctc tgtggggcca taaactatga aaacatcatg      1440
     gatgctggct ggaccgtctg ggtcacntgc agatgcccac gggaaagggc ttgttctctg      1500
     atgggaccat ctaaaattga gctgctnatn ggctctgtat ttctgataca gagactgatt      1560
     gcattcctaa cttgtgattn ctgccaaaag ctgcangttg ggggagggca catcacaggg      1620
     antgtgaccc ctctacccac tcctgacaga tcagactctn gaccccctct cggggatgtc      1680
     tcactgctgt tgacttgttg ttcggctttc tggattagtt gcagtttgca acagtggact      1740
     gacagcctga ntctacttcc ctcgcctttc tcctggtaca cacancttag taaggcagtt      1800
     tgattattaa atgcagctgt ccccagaaag ggattgatct ttttttctag gctgctcact      1860
     ggataaatga tcaggacgaa aagggtggga aggttatgta aactcatttt gaaaantttt      1920
     gaaaattcag gatttcgtcc tgaccaattc ctgaacatga tgtgtctttc tggttaagtt      1980
     gtataaaaat gtttttctgt gaaaatgctt ttgtccctct tgcatacaac ccttccggat      2040
     aaaaggtctg ggtgagagta agagatgatt gaaaaaatgt aaagttatga ttactgaatg      2100
     ggacacactg attttgtaac aacggagaaa aaacaaaanc ctggcacctg gggaggcacg      2160
     gggagnggga gagggcatta atgatctttg tttttcagaa ctgctcctgg aagctttccc      2220
     ctcttcccga agaaaaactc cccgtgctgc ctttccaagc tgctgcgagc gctttgaatt      2280
     caaactgact gctgagccta ngatcacacc tgacagcgct gactatgaga cagcaggggg      2340
     tggccccagc tcctgcactt tccacgnaga acacctccag atgtcgtcca cactcatgag      2400
     gcggatgaac tggtgtcacg gacaagcaaa actgtttgga actgactgcc tcaggcagtc      2460
     cctctgaaac caaggactga actgaattat ttggactgga ctgggaaccc tagggcagga      2520
     ggccccacgg tgggaggcca cactgggggc cctgttaacc tgtactgcct gactaatgta      2580
     tgtcctgctt ggggtgccct aacaattgta aactctttgt ttccaggggt accacgtgtg      2640
     ccctctggga ttgtacttct tgtgtgtgta ccctgactat catgacactg cctcagccct      2700
     ggaaggcttt caggtcagct tcaacttact ggccagagtt gtgctgtgcc tgaattgatg      2760
     cctcgggcca gaaaaaaaaa ggttaataca gaaacttaag gaggaagcca cctggctttc      2820
     taagatagac ctttatggtt aatgggattt gttttaactg gctaaatcca ggacccctaa      2880
     agggcataac tgagatcaat actgcagntt ggtctcaccc tgctgcgtgg ggtcctactg      2940
     ataataattt tgctgtaaag atgccttggc caagggccaa gggggtggac                 2990
//
ID   L1_Fc_orf2  repbase; DNA   ; MAM   ; 3292 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   L1 Non-LTR Retrotransposon from Felis.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Felis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Felidae.
XX
RN   [1]
RP   1-3292
RA   Smit A.F.;
RT   "L1_Fc_orf2 - L1 Non-LTR Retrotransposon from Felis.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4% div.
XX
SQ   Sequence 3292 BP; 1377 A; 661 C; 583 G; 669 T; 2 other;
     atgactctaa acccatatct ttctataata acactgaacg taaatggact aaatgcgcca        60
     accaaaagac atagggtatc agaatggata aaaaaaacaa gacccatcta tttgctgtct       120
     acaagagact cattttagac ctgaggacac cttcagattg aaagtgaggg gatggagaac       180
     tatctatcat gctactggaa gtcaaaagaa agctggacta gccatactta gatcagacaa       240
     actagacttt aaattaaagg ctgtaacaag agatgaagaa gggcattata taacaattac       300
     agggtctatc catcaggaag agctaacaat tataaatgtc tatgcgccaa atacaggagc       360
     ccccaaatac gtaaaactgt taatcacaaa cataagcaac cttattgata agaatgtggt       420
     aattgcaggg gactttaaca ctccacttac aacaatggat agatcatcta gacacacggt       480
     caataaagaa acaagggccc tgaatgatac attggatcag atggacttga cagatatatt       540
     tagaactctg catcccaaag caacagaata tactttcttc tcgagtgcac atggaacatt       600
     ctccaagata gatcacatac tgggtcacaa aacagccctt cataagtata aaagaattga       660
     gatcatacca tgcatacttt cagaccacaa tgctatgaag cttgaaatca accacaggaa       720
     aaagtctgga aaacctccaa aagcatggag gttaaagaac accctactaa agaatgagtg       780
     ggtcaaccag gcaattagag aagaaattaa aaaatatatg gaaacaaacg aaaatgaaaa       840
     tacaacaatc caaacgcttt gggatgcagc gaaggcagtc ctgagaggaa aatacattgc       900
     aatccaggcc tatctcaaga aacaagaaaa atccccaata caaaatctaa cagcacacct       960
     aaaggaaata gaagcagaac agcaaagaca gcctaaaccc agcagaagaa gagaaataat      1020
     aaagatcaga gcagaaataa acaatataga atctaaaaaa actgtagagc agatcaatga      1080
     aaccaagagt tggttttttg aaaaaataaa caaaattgat aaacctctag ccaggcttct      1140
     caaaaagaaa agggagatga cccaaataga taaaatcatg aatgaaaatg gaattattac      1200
     aaccaatccc tcagagatac aagcaattat cagggaatac tatgaaaaat tatatgccaa      1260
     caaactggac aacctggaag aaatggacaa attcctaagc acccacacac ttccaaaact      1320
     caatcaggag gaaatagaaa gcttgaacag acccataacc agcgaagaaa ttgaatcagt      1380
     tatcaaaaat ctcccaacaa ataagagtcc aggaccagat ggcttcccag gggaattcta      1440
     ccagacattt aaagcagaga taatacctat ccttctcaag ctattccaaa aaatagaaag      1500
     ggaaggaaaa cttccagact cattctatga agccagtatt actttgattc ctaaaccaga      1560
     cagagaccca gtaaaaaaag agaactacag gccaatatcc ctgatgaata tggatgcaaa      1620
     aattctcaat aagatactag caaatcgaat tcaacagcat ataaaaagaa ttattcacca      1680
     tgatcaagtg ggattcattc ctgggatgca gggctggttc aacattcgca aatcaatcaa      1740
     cgtgatacat cacattaata aaagaaaaga taagaaccat atgatcctgt caatcgatgc      1800
     agaaaaggca tttgacaaaa ttcagcatcc tttcttaata aaaaccctcg agaaagtcgg      1860
     gatagaagga acatacttaa acatcataaa agccatttat gaaaagccca cagctaacat      1920
     catcctcaat ggggaaaaac tgagagcttt ttccctgaga tcaggaacac gacagggatg      1980
     tccactctca ccgctgttgt ttaacatagt gttggaagtt ctagcatcag caatcagaca      2040
     acaaaaggaa atcaaaggca tcaaaattgg caaagatgaa gttaagcttt cactttttgc      2100
     agatgacatg atattataca tggaaaatcc gatagactcc accaaaagtc tgctagaact      2160
     gatacatgaa ttcagcaaag ttgcaggata caaaatcaat gtacagaaat cagttgcatt      2220
     cttatacact aataangaag caacagaaag acaaataaag aaactgatcc cattcacgat      2280
     tgcaccaaga agcataaaat acctagggat aaatctaacc aaagatgtaa nagatctgta      2340
     tgctgaaaac tatagaaagc tgatgaagga aattgaagaa gatataaaga aatggaaaac      2400
     cattccgtgc tcatggattg gaagaataaa tattgtcaaa atgtcaatac tagccaaagc      2460
     tatctacaca ttcaatgcga tcccaatcaa aattgcacca gcattcttct cgaagctaga      2520
     acaagcaatc ctaaaattca tatggaacca caaaaggccc cgaatagcca aagtaatttt      2580
     gaagaagaag accaaagcag gaggcatcac aatcccagac tttagcctct actacaaagc      2640
     tgtaatcatc aagacagcat ggtattggca caaaaacaga cacatagacc aatggaatag      2700
     aatagaaacc ccagaactag acccacaaac gtatggccaa ctaatctttg acaaagcagg      2760
     aaagaatatc caatggaaaa aagacagtct ctttaacaaa tggtgctggg agaactggac      2820
     agcaacatgc agaaggttga aactagacca ctttctcaca ccattcacaa aaataaactc      2880
     aaaatggata aaggacctga atgtgagaca ggaaaccatc aaaaccctag aggagaaagc      2940
     aggaaaagac ctctctgacc tcagccgtag caatttctta cttgacacat ccccaaaggc      3000
     aagggaatta aaagcaaaaa tgaactactg ggacctcatg aagataaaaa gcttctgcac      3060
     agcaaaggaa acaaccaaca aaactaaaag gcaaccaacg gaatgggaaa agatatttgc      3120
     aaatgacata tcggacaaag ggctagtatc caaaatctat aaagagctca ccaaactcca      3180
     cacccgaaaa acaaataacc cagtgaagaa atgggcagaa aacatgaata gacacttctc      3240
     taaagaagac atccggatgg ccaacaggca catgaaaaga tgctcaacgt cg              3292
//
ID   ERV18_MD_I  repbase; DNA   ; MAM   ; 6250 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV18_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV18_MD_I.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-6250
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-6250
RA   Gentles A., Jurka J.;
RT   "ERV18_MD, a prolific ERV1 class retroelement from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(11), 359-359 (2005).
XX
CC   [2] (Consensus)
XX
CC   One of the more prolific ERVs in Monodelphis, there are several
CC   thousand large (>2kb) fragments of the internal region in the
CC   genome, with similarity to the consensus above 85%. The
CC   corresponding LTR is ERV18_MD_LTR. This consensus was
CC   reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="ERV18_MD_I_1p"
FT                 /translation="XFSNTQTSLNRTYRLDNMGNTATHQRKSGNIPPDSAL
FT                 HKFLNSWSDPNLPKENWMTKKEARKLCKAWMDISFTWPKYGSFDFKILKDL
FT                 KLAIKNKDSKDYKYWYLWAYHVDKSTIPSSEETFLSLEPNHSSLTPSVKSS
FT                 KKHALSSHLACEEVSPHTDPNQDLNPSAPLPVRPHSSPTPPIPFPPNLPLY
FT                 PPLPTHLPYPHPYHPYFNPFPYPPSYPPYYDPSRPHPSYSSPPHPQPLPHS
FT                 SPPHPQPHPRSFHSASPPADQLHSTTPPPSPTSLTTTHSIELQNTGQAAVA
FT                 TDDSNKGLFPLRVVPTYNRHGDLVNIRHHTPFSPQDIERFKEKTPSYEAEP
FT                 VVVINKFESIFRTYNPTWLDVEDLLQALLTERERNKILSLVNQAQGEGTAH
FT                 WPTEDPKWDPNSEQDYLQLCQARNALIKAMRACSDRPGTWTKFENLKQEDS
FT                 ENPTQFMDRLIELGGRYIELDLDRERDLRQIRIQFVKNSCKVVRNYFMTSC
FT                 PNWPTMDLEELKRVAVYAFEGHKEKEKRTLI"
XX
SQ   Sequence 6250 BP; 1859 A; 1228 C; 1152 G; 2003 T; 8 other;
     gatggcaacc attggttttt tttagaacct taattttctt ctgagagaag ttttgagtct        60
     taggtaaagc ttaagtaaga tagaagctgc ttcattgctg cctgccttca tatataaaag       120
     aaccttggtg gagagaggaa acaggctcct ctttttccag atcttggatt ggtgagaaaa       180
     actccttccc tkgtggcacc ccaccccttt ttttctttta gcttaagggg tgaaatagaa       240
     tgtgggtttt aggacccaac aggaactcct gctcttttat tttccacagc aggaaaggtc       300
     ctagtgttcc ttctttcagc ctagtgcagt gcagrggggg ggaacccctt gaataatcgt       360
     ggagtagagt taggggctcc ctggggcagt agagaaggga aaggagcttt ttcccaaaac       420
     agaactgggg acccaggcag gggagcggct gctttatatt aaagggcagg atcccatggc       480
     aaaatgcaga cttgggaatg gttccctcac agcataccct tgggacagag gtggccaccc       540
     cccattccaa acsggaccga gttttttttt taaaccaagg ggcactagga cccaacagat       600
     ctttaccagc ccagtgtctg cctgactttc cccacagcca ctgcgcaggg acctgctcag       660
     gacacccatt aaattaatcc tgggggtcct tccaggctgt gactagggtt aggagctccc       720
     tgcccccccc aactttgaaa aaacgtggcc actcctaaac ctggggggag gggaaactgc       780
     atttttctct ctccctcccc caccctcaaa ctttgcttgt agactgcctg ccttctttag       840
     catatctaaa gccacatttt ccttgggagt gcctgccttc attagcattt taaaaagctt       900
     tcctggaaga ctgcctgcct tctttagcat attaaaagac aatttttttt tgctttctct       960
     ttatctgact gcttgcttag ataggtctac ccacaggtgc cttccactct acatgcattt      1020
     atagcgccac ctactgtcga gaattaaaac tgcaggaaaa taaaaagaat tcctttgcta      1080
     ctgctactag tgatctaaaa taatgctatt aaattgaata catttaaata aaaggattat      1140
     taataggaaa tattaataat attgaattta aattaaaacc aaatttctaa aattgaacaa      1200
     agccaacatt aaatcaaatt aattacatgc aatattaagg aataatttta gaacacaata      1260
     gtattaataa tactatcaat aacaataatt attaattttc aataactatt attagtcatt      1320
     attattaatt actaatggtt attattgatt attgatactt gtttatggtt tatggttgtt      1380
     aattattaat aacaataatt ataataaatg catattatta attattgata acatcattaa      1440
     taattataat aaatgcatat tgttattaat tattaataac aacaattatt aaactaaata      1500
     cacattcatt attgatacta ttgctgtgca acaattactg tttccttaca ttagcttttt      1560
     gttttaaacc tcctcttatt gccttccaca ataacattga agaactttgt gtctccattt      1620
     tttttatgtt ttaggaactt ttcattgttt aagctgayca tttagcaata ctcaaactag      1680
     cttaaatagg acatacagac tagacaatat gggaaatact gcaacacatc aaaggaaatc      1740
     aggaaatatt cctcctgatt cagccctgca taaattttta aattcctgga gtgatccaaa      1800
     tttgcctaag gagaattgga tgacaaagaa agaagctaga aagctttgta aggcatggat      1860
     ggacatatct tttacctggc caaaatatgg ctcttttgac ttcaagatct taaaagattt      1920
     gaagttagcc attaaaaaca aagattccaa agattataaa tactggtact tatgggcata      1980
     tcatgttgat aaatcaacca ttccctccag tgaggaaacc tttctttctt tggaaccaaa      2040
     ccattctagc ttaactcctt cagtgaaatc tagcaagaaa catgctctat catcccacct      2100
     ggcctgtgag gaggtttctc ctcatactga cccaaaccag gacttgaacc cctcagctcc      2160
     tctccctgtc agacctcact catcccctac tcctcccatc ccctttcctc ccaatctacc      2220
     tctctaccct cctttgccca cccatctccc ctatccccac ccataccatc cctacttcaa      2280
     tccttttcca taccctcctt cctacccacc ttactatgac ccctctagac ctcacccatc      2340
     ctactcctct ccaccccacc cccagcccct cccccattcc tctccacccc acccccagcc      2400
     ccacccccga tcctttcact ctgcctcccc acctgctgac cagctccatt ccaccacccc      2460
     acccccttcc cctaccagcc tcactacaac ccactccatt gaactccaga acacaggcca      2520
     agcagcagtt gccacagatg attcaaataa aggtcttttc cctctaagag ttgtccctac      2580
     atataacaga catggagatt tagtaaacat tagacatcat acaccttttt ctccacagga      2640
     cattgagaga ttcaaagaaa aaacaccttc atatgaagct gagcctgtgg tggtgataaa      2700
     taagtttgaa agcatttttc gcacatataa tcccacatgg cttgatgtag aagatttgct      2760
     ccaggccttg ctaacagaaa gggaaaggaa taagattctt tctcttgtta atcaggccca      2820
     aggagaggga acagctcatt ggccaactga agatcccaaa tgggacccaa attcagagca      2880
     agattactta caactatgcc aggctagaaa tgcattgata aaagctatga gagcctgttc      2940
     tgataggcct ggtacatgga ctaaatttga aaatcttaag caagaagata gtgaaaatcc      3000
     cacccaattt atggatagac ttattgagct gggaggaaga tatattgagc ttgatctgga      3060
     tagggaacgg gaccttagac aaatcagaat acaatttgtg aaaaacagtt gtaaggtagt      3120
     taggaattat tttatgacta gctgtccaaa ttggcctact atggaccttg aagaattgaa      3180
     aagagtggca gtttatgctt ttgagggaca taaggaaaag gagaagagaa cactgattta      3240
     gtggaagcat taaggaagga aataaaggaa ttgacttcta aacagggtga gaaggataag      3300
     gagaatgcta ctttagtaga gacattgagg aaggaaataa aagaattaac tgaaacagtt      3360
     gtaaaggtaa agcaaggaga gatcatagct cccttacaag aatccacaaa acaaccacta      3420
     acatgttatt tttgtggaaa agttggtcat gtaattatga attgtaagaa gaggaatcag      3480
     gaaaatagga atagaagttt caggaatagt aatattgata ggaggaatag ttattcgaat      3540
     gaggaaaatc aaaactcaca cccaaacacc tgtactcaat gtgggaactc ccctcagcat      3600
     gggagacccc agaggtgtgg acaaagggat tgtgatgaat gatggtactt gggaggggaa      3660
     ggaacctcaa agagtctgga ggtgaatttt aagccttttc agacctcatt gccttattga      3720
     tgttaactgt ttcagtttgt tcccctcccc agaatgaaga agtctctgta actcaattct      3780
     aaatacaaga tgtatgtaat ttactgttaa ccacttcata agttatcaaa attgaaatat      3840
     tctgttacat tgtctttatt tgtacctccc ctatgactat gattgtactg aagaatatct      3900
     ttgtaaaagc ccataaacag cattttgttc cttttttgcc tttgttaatt gtcacacaga      3960
     gctgatggat ggactccatc acattggttt caacctgtat acaagttttg gagaatttaa      4020
     ttgtctaata atttaaattg attttaatga gtattcagac atgattttca gatatctggg      4080
     agcatcccta cctctgatca tttatttgcc tgcctcttga gttgtttgta acaagaggta      4140
     agggtctatt tgtagttgaa gtaaagtgca atggcattgt tgtattttcc catctctgca      4200
     tttattgtaa atgtaatgga tgacatatct gaagtgattt tcacttttta gtcctcggct      4260
     ccacgtgaaa atggttggga catattggag acagttctgt tacactgtta cagtctcata      4320
     ccaagaggga gggaggtgcc caagtggctt agttaacctg tgatgtgtta taatctcatc      4380
     cagtaggtgg gaatgatttt tcctgtgaag ccttgtagct ttgaaatgga tttattatat      4440
     ttgtaattct tcatcaactg tacagaggtt tttctgggtt ttctctccca ccaaattttg      4500
     gaatgatggt aataatagac tttgttaaaa atatctttgc caaagttgaa agattggcta      4560
     aatctgtaga acttgtgaca agtattcatg atttcaaagg tttttacatg tcacacagca      4620
     agtcatgtga atcctaatga tagtgggttt gtttgcwatt gtcattaaat gggctcttat      4680
     aattttgggg attttggtac tttttagaat ctgtattagt tgttgtacta ctgtttttaa      4740
     aaggttttta cctggtgaaa aaattatgta cactcacact gtggatcctg gccaagttaa      4800
     gagtgatata catttcattt ttgagtgagc accttttgtg ttgtgcctct gcttggctaa      4860
     cacattgtca catggaatgt gaactgtgaa attatgattt tttaattatt tttttctctt      4920
     tatgtttgta ataggatatt tgattttttt ttctttyttt tttcctaacc ttggtgatac      4980
     ttgaagtaca tgaaatcagt attaatgttt tttttttact tgaaggataa agtttacagt      5040
     ataagtttac agtatctatt agccctagta atatgcatac ccaaaaggct ttcgactatg      5100
     gaaacctgcc atttattgat aaatgttatg ggactttgtt taatgattat gtctgattcc      5160
     aggagaaggg aacaaaagag ccaatataca gtgccaagta gcacgaggtc aaaacagacc      5220
     aaatccaatc cagggaggat tgttgaactt ctatgccaat acaaaaggac ttgaacctag      5280
     tgtggaatcg aggttgcggc rcttgacata tgttaagatg caggacttcc ttgaaccaca      5340
     ctccatgtgc aatactttga gtcaagtacc tcaggttggc tatcatcctg gctcccccta      5400
     tctctgacag tgatggtaaa atcagaccag ggaatgattt ttcccatttg ctgctgaaac      5460
     ttagtccttt ctctcttata gtttggcaat tttctgtagt cctggctgca aatgggtaaa      5520
     gtgctgtatt gctgctattg tcctacaggc ttgtgggaca taagtcactt taattggtcc      5580
     ttgctgtgat tcaagaacct gttacaggtt tttttatttt ttactcagaa ttttatacat      5640
     gtaagatttt tatttatttt ttatcatttc tgtatttctt atttttatac agaatttaat      5700
     ttttactctt ttatttggga ttttttgggt ggtttgtttt tgtttttttt tcttttgaca      5760
     attgtttcat atacctcata actcagtcat gtatcccagt gtgattctgg tgttggtcaa      5820
     caccctcctc aggggggatt gtgtaattat cctaaaattc aaggtttaaa attttttgga      5880
     gaaatttcag gaaaagaaac ttgccaacac ccaaaatcaa gaaagtggat ccttttggag      5940
     aaggtgctgt aaagatgcct gaagaagcta cacactgcat caaaagatcc agaatgaact      6000
     ttgggatata atgaactgaa ttgaaggggt tgaacatact tattctgaat gtaaactctt      6060
     atgccaaagg ggactgcccc ctaattggca ttttgtcaat gygtctatca atcagttttt      6120
     gtattttact cccatctcta actattgtaa ctccctctta gaaaaatgca atattgtatg      6180
     tacttttagc tagaaggtat ttagagttat aagatagtta tatttaaatg atccattggg      6240
     gagatgggtc                                                             6250
//
ID   L1-2_MD     repbase; DNA   ; MAM   ; 6750 BP.
XX
AC   .
XX
DT   19-OCT-2005 (Rel. 10.1, Created)
DT   19-OCT-2005 (Rel. 10.1, Last updated, Version 1)
XX
DE   L1-2_MD, a relatively young LINE1 element from Monodelphis
DE   domestica - consensus sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; L1-2_MD.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-6750
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-6750
RA   Gentles A., Jurka J.;
RT   "L1-2_MD, a relatively young L1 element from the opossum M.
RT   domestica.";
RL   Repbase Reports 5(10), 311-311 (2005).
XX
CC   [2] (Consensus)
XX
CC   This L1 element appears to have been highly successful in
CC   Monodelphis, with >185000 hits in the current assembly. L1-2_MD
CC   is 84% similar to L1-1_MD over 5kb of its sequence. However,
CC   several thousand copies average >96% similarity to this
CC   consensus. Copies of L1-1_MD with similarity to that consensus of
CC   >99.5% are also high in number. This suggests that L1-1_MD and
CC   L1-2_MD may have been simultaneously active in the Monodelphis
CC   genome. L1 was probably the autonomous element responsible for
CC   mobilization of the very frequent SINE element MAR1_MD. Copies
CC   are flanked by 16-17 bp target site duplications. This consensus
CC   was reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           744..1871
FT                 /product="L1-2_MD_1p"
FT                 /translation="MRGARAQPNTGSKEGVNSSKQQKKKKEITIDSFCTGN
FT                 EQRANETEGEDPAKEKSEIPANWIQALEELKMQFKTQLREAEDNWEKNLKT
FT                 KISHLETENSVLKAKINQLENEAKEMKDEAKQMKDEVKKMKDDLQRKSDQK
FT                 EKDDQKTKDEIQSLRTRIQQLESSDLTRQQDTIKQNQKNEKIEENMKHLIH
FT                 KTEDLENRSRRDNLRIIGLPEDHDKRKSLDIILQEIIKENCPEILEQEGKV
FT                 EIDRIHRSPPVLNPQLTTPRNVIAKFKNYQTKEKILQAAKKKSFRYQGTTV
FT                 RITQDLAASTLKKRKAWNTIFRKARELGLQPRINYPAKLTIFLQGKVWSFN
FT                 KIEEFQEFVKKRPDLNRKFDVQAQNSRESSKGN"
FT   CDS           2594..6397
FT                 /product="L1-2_MD_2p"
FT                 /translation="MLGNTQLVIITLNVNGMNSPIKRKRIAEWIRVQNPTI
FT                 CCLQETHMRKVDTHRVKVRGWSQIYWASTDKKKAGVAIMISDKAKVKINLV
FT                 KRDREGNYILIKGSIDSEEISVLNMYAPNGIASKFLKEKLEELKDEIDRKT
FT                 ILVGDLNLPLSELDKSNQKINKKEVREVNEILEKLELVDMWRKINRDKKEY
FT                 TFFSAAHGTFTKIDHVLGHKNIANKCKRAEIINATFSDHNAMKIIISKGTW
FT                 RGKSKINWKLNNTILQNQLVKEQIIETINNFIEENDNDETSFQNLWDAAKA
FT                 VLRGKFISLSSYINKLRRAEVNELGMQIKKLESEQIKNPQMKTKLEILKLK
FT                 GEINKIESQRTIDLINKTRSWYFEKTNKIDKVLVSLIKKRKEINQIDSIQD
FT                 EKGDLTSNEEEIKAIIKNYYAQLYGNKYGNLGDMDEYLQKYKLPRLKEEEI
FT                 NYLNNPISEKEIEQAIKELPKKKSPGPDGFTNEFYQTFKEQLIPILNKLFD
FT                 RIGQEGVLPNSFYDTNMVLIPKPGRSKTEKENYRPISLMNIDAKILNRILA
FT                 KRLQQVITRVIHYDQAGFIPGMQGWFNIRKTIHIIDHINKQTDKNHMIISI
FT                 DAEKAFDKIQHPFLLKTLESIGIEGPFLKIINSIYLKPSANIICNGDKLEA
FT                 FPIRSGVKQGCPLSPLLFNIVLETLAVAIREEKEIEGIKIGNEETKLSLFA
FT                 DDMMVYLRNPRESTKKLLEIINNFSKVAGYKINPHKSSAFLYISNPFQQQE
FT                 LESEIPFKITLDNIKYLGIYLPRQTQELYEHNYKTLSTQLKLDLNNWKNID
FT                 CSWVGRANIIKMTILPKLIYLFSAIPIELPKNFFTELEKTITKFIWKNKRS
FT                 RISREIMKKNAKEGGLAVPDLKLYYKAVVIKTIWYWLRDRKEDQWNRLGVN
FT                 DLSKTVYDKPKDPSFWDKNPLFDKNCWENWKTVWERLGLDQHLTPYTKINS
FT                 EWVNDLNIKKETISKLGEHRIVYLLDLWEGKDFKTKQDLERVTKCKINNFD
FT                 YIKLKSFCTNKTNVTKIRRVATNWETIFIKTSDKGLITQIYKELNQLYKKS
FT                 SHSPIDKWARDMNRQFSAKEIKTINKHMKKCSTSLIIREMQIKTTLRYHLT
FT                 PSRLANITAMESNECWRGCGKVGTLIHCWWSCELIQPFWRAIWNYAQRAIK
FT                 DCLPFDPAIALLGLYPKEIIRKKTCTRIFIAALFVVAKNWKMRGCPSIGEW
FT                 LNKLWYMLVMEYYCAKRNNKVEEFHGDWNNLQEVMQSERSRTRKTLYTETD
FT                 TLWYNRR"
XX
SQ   Sequence 6750 BP; 2781 A; 1182 C; 1428 G; 1358 T; 1 other;
     ggggggcgga gtcaagatgg cagcttagca agcagcaaaa gttcagacct cgtggaagac        60
     ccttccttac cgatacagac tgaatgctcc tagggcaccg aaattcaatc tgaacaacag       120
     gacagaagcg gggaaccctc cttctggact caaatcaaaa ggtacgcccc ccaaaagccg       180
     gaatccgaga atactcaggg ctaaggggaa ggcagagcga aggtcccagg acccctcccc       240
     cacaacccag agggctgagc ccccagcagc agcgggaacc tctgagcggg caaaggtgct       300
     ggtttgcagg gtctaccttg tgagcagcgg ggcgccgggc tcggagcatc cagcttggac       360
     agcggggagg aagccaggga gaaacgggcc gtggctgggt ccctccatcg ggctccagtc       420
     tcacccttgc ctcgggcaca tccagaccaa tccagttgaa ctaatcccat cagaactcct       480
     cagagtttag ggaggcgggc aaaggcactt gcggacagcg gagaagcagc tggagagaac       540
     tggagagagc ctgggcggcc cagccttcca ggagtcttca gagcctcagt gcttcatacc       600
     acatacagcc caacccaatt gaactcaatc caatcaaaag cctccagagg acagggaagc       660
     taacattcct cccctagaga ctgtaccaag agatctgaca aagctccaag aggggagact       720
     gacagcccca aaaccaaaac aaaatgagag gagcaagagc acagccaaat acggggagca       780
     aagaaggggt aaactcgagc aaacaacaga aaaagaagaa agaaattaca atagacagct       840
     tctgcacagg taatgagcaa agagcgaatg aaacagaggg ggaggaccca gcaaaggaaa       900
     aatcagaaat cccagcgaat tggatacagg ctttggaaga actcaaaatg caattcaaaa       960
     cacaattaag agaggctgaa gacaattggg aaaagaactt aaaaactaag ataagtcatc      1020
     tggaaacaga aaatagtgtc ttgaaagcca aaatcaacca gctggaaaat gaggcaaagg      1080
     agatgaaaga tgaggcaaag cagatgaaag atgaggtgaa gaagatgaaa gatgacctcc      1140
     aaagaaaatc cgaccaaaag gaaaaggacg accaaaaaac taaggatgaa atccagtctt      1200
     taagaaccag aatacaacaa cttgaatcga gcgacctcac aaggcagcaa gacactataa      1260
     aacaaaacca aaagaatgaa aaaattgagg aaaatatgaa gcatctcatt cacaaaacag      1320
     aggatttaga aaatcgttca aggagagaca atttaagaat tattggccta ccagaagacc      1380
     atgacaaaag aaaaagcctg gacattatat tacaggaaat tattaaagaa aactgccccg      1440
     aaatccttga acaagaggga aaagtggaga ttgatagaat ccacagatca cctcctgtac      1500
     ttaatcccca actgacaaca cccaggaatg ttatagccaa attcaagaac tatcagacca      1560
     aagaaaagat attacaagct gccaagaaga agtcattcag ataccaagga accacagtga      1620
     ggataactca ggatctggct gcatccacac tgaaaaaaag aaaggcatgg aatacgatat      1680
     tccggaaagc aagggaacta ggtctacaac caagaatcaa ctacccagca aaactgacta      1740
     tattcttaca ggggaaagta tggtcattca acaaaataga agaatttcaa gaattcgtaa      1800
     agaaaagacc agacctgaac agaaaatttg atgtccaagc acagaactca agagaatcat      1860
     caaaaggtaa ttaaaaaaga ggggaaaaaa gaaaaacaaa aaaaaaattt ttaagagact      1920
     caataagtta aaatgatatg tatccctata agaaaagagg tcattggtaa ctcttaaaaa      1980
     ctgttgttat tagctgggca gcaaaaagaa gtatacttag agggaacagc aacaaactgt      2040
     ataggatgaa aggacaagac ataaataggt atatagatat atgcatgcaa aaatacatac      2100
     gcatgagtat gcatatatat atatataact agagcttaaa aataggttaa tattaaaaga      2160
     aatgggaaaa gaaacaaatg ggggtaaatt tatatgtcat aaagaagctc atggtgggag      2220
     gggggagaac atcaatacac tggaagggta aagaggtcag agacaggaaa tactcaactt      2280
     ttacgtgctt tgaaagtgac tcaaagaggg aaaaacaatc caatccattg ggggcagaga      2340
     atagatttgc accctatagg ggagtagaag ggtaacaaac ggtctggtgg ggagggaagc      2400
     agtacaagag agggagggag aggggggtta attttagaaa gactacaggg aaaataaggg      2460
     ggggataaat agggaggggg gtagaaaggg aagtaaaata agggtgggaa caagggggac      2520
     tgttcaaaag caaacattgg tgtagaagga aatagtgaaa gaagaaaagg caggtaaagg      2580
     agcagaaatc aaaatgctgg gaaatacaca gctagtaatc ataactctga atgtgaatgg      2640
     aatgaactca cccataaaac gcaagcgaat agcagagtgg attagagtcc aaaaccctac      2700
     catatgctgt ctacaagaaa cacatatgag aaaggtagat acacataggg tgaaagtaag      2760
     agggtggagc caaatctatt gggcatcaac tgacaaaaag aaggcaggag tcgcaatcat      2820
     gatatccgac aaagccaaag taaaaataaa tctagttaaa agagataggg aaggtaatta      2880
     catcctgata aaaggcagta tagacagtga ggaaatatct gtactcaaca tgtatgcacc      2940
     aaatggcata gcatccaaat ttctaaagga gaaactagag gaactcaagg acgaaataga      3000
     tagaaaaact atactagtgg gagatctgaa ccttcctcta tctgaactag ataaatcaaa      3060
     ccaaaaaata aataagaaag aggtaagaga agtgaatgaa atcttagaaa aattagagtt      3120
     agtagacatg tggagaaaaa taaataggga caaaaaggaa tataccttct tttctgcagc      3180
     acatggtaca tttacaaaaa ttgaccatgt attagggcat aaaaacattg caaacaagtg      3240
     caaaagagca gaaataataa atgcaacttt ctcagatcac aatgcaatga aaataataat      3300
     tagtaaggga acatggagag gtaaatcgaa aattaattgg aaattaaaca atacgattct      3360
     ccaaaaccag ttagttaaag aacaaatcat agaaacaatt aataacttca ttgaagaaaa      3420
     tgacaatgat gagacatcct ttcaaaacct atgggatgca gccaaagcag tactcagggg      3480
     gaaatttata tccttgagtt catatattaa caaattaaga agggcagagg tcaatgaatt      3540
     gggcatgcaa attaaaaaat tagaaagtga acaaattaaa aatcctcaga tgaagactaa      3600
     attagagatc ctaaaactca aaggagaaat taataaaatt gaaagtcaaa gaactattga      3660
     tttaataaat aagactagaa gctggtactt tgaaaaaaca aataaaatag acaaagtact      3720
     agtcagtcta attaaaaaaa ggaaagaaat aaaccaaatt gacagtatcc aagatgaaaa      3780
     aggagacctc acctctaatg aagaggaaat taaggcaatc attaaaaact actatgccca      3840
     attatatggc aacaaatatg gcaatctagg tgatatggat gaatacttac aaaaatataa      3900
     attgcctaga ctaaaagagg aagaaataaa ttaccttaac aaccccattt cagaaaaaga      3960
     aattgaacaa gccatcaaag aactccctaa gaaaaaatcc ccaggtccag atggattcac      4020
     aaatgaattc tatcaaacat tcaaagaaca actaatccca atattaaaca aactatttga      4080
     cagaataggc caagaaggag ttctaccaaa ttcattctac gacacaaaca tggtactgat      4140
     cccaaagcca ggcaggtcaa aaacagagaa agaaaactat agaccaatct ccctaatgaa      4200
     tatagacgca aaaatcctaa ataggatact agcaaaaaga ctccagcaag tcatcacaag      4260
     ggtcatccac tatgaccagg caggattcat accaggaatg caaggatggt tcaatattag      4320
     gaaaaccatc cacataattg accatattaa caagcaaact gacaaaaatc acatgattat      4380
     ctcaatagat gcagaaaaag cctttgataa aatacaacac ccattcctat tgaaaacact      4440
     agaaagtata ggaatagaag ggcctttcct aaaaataata aacagtatat atctaaaacc      4500
     atcagcaaac atcatctgca atggggataa actagaagcc tttccaataa gatcaggagt      4560
     aaaacaagga tgcccattat cacctctatt atttaacatt gtactagaaa cactagcagt      4620
     agcaattaga gaagaaaaag aaattgaagg tattaaaatt ggcaatgagg agaccaagct      4680
     atcactcttt gcagatgata tgatggttta cttaaggaat cctagagaat caaccaaaaa      4740
     gttactcgaa ataatcaaca actttagcaa agttgcagga tacaaaataa acccgcataa      4800
     gtcatcagca tttctatata tctctaaccc atttcagcag caagaattag aaagcgaaat      4860
     accattcaaa atcaccctag acaatataaa atacttagga atctatctgc cgagacaaac      4920
     acaggaacta tatgaacaca actacaaaac actttccaca cagctaaaac tagatctaaa      4980
     caattggaaa aacattgatt gctcatgggt gggacgagct aacataataa aaatgacaat      5040
     cctacccaaa ttaatttact tatttagtgc catacccatt gaactaccaa aaaacttctt      5100
     tactgaatta gaaaaaacca taactaagtt catttggaag aacaaaagat caaggatatc      5160
     cagggaaatc atgaaaaaaa atgcaaagga aggaggactt gcagtcccag atctcaaact      5220
     atactataaa gcagtggtta tcaaaacaat ttggtactgg ctaagagaca gaaaggagga      5280
     tcagtggaat agacttggcg taaatgatct cagcaagaca gtttatgaca aacccaaaga      5340
     ccccagcttt tgggacaaaa atccattatt tgataaaaac tgctgggaaa attggaagac      5400
     agtgtgggag agattaggtt tggatcaaca cctcacaccc tacaccaaga taaattcaga      5460
     atgggtgaat gacttgaaca taaagaagga aactataagt aaattaggtg aacacagaat      5520
     agtatacctg ttagaccttt gggaagggaa agattttaaa accaagcaag acttagaaag      5580
     agtcacaaaa tgtaaaataa ataattttga ctacatcaaa ttaaaaagtt tttgtacaaa      5640
     caaaaccaat gtaactaaaa tcagaagggt agcaacaaat tgggaaacaa tcttcataaa      5700
     aacctctgac aaaggtttaa ttactcaaat ttacaaagag ctaaatcaat tgtacaaaaa      5760
     atcaagccat tctccaattg ataaatgggc aagggacatg aacaggcagt tctcagccaa      5820
     agaaatcaaa actattaata agcacatgaa aaagtgttct acatctctta taatcagaga      5880
     gatgcaaatc aaaacaactc tgaggtatca cctcacacct agcagattgg ctaacataac      5940
     agctatggaa agtaatgaat gctggagggg atgtggcaaa gtagggacac taattcattg      6000
     ctggtggagt tgtgaattaa tccaaccatt ctggagggca atttggaact atgcccaaag      6060
     ggcgataaaa gactgtctgc cctttgatcc agccatagca ctactgggct tgtaccccaa      6120
     agagataata aggaaaaaga cttgtacaag aatattcata gctgcactct ttgtggtggc      6180
     caaaaattgg aaaatgaggg gatgcccttc aattggggaa tggctgaaca aattgtggta      6240
     tatgttggtg atggaatact attgtgctaa aaggaataat aaagtggagg aattccatgg      6300
     agactggaac aacctccagg aagtgatgca gagcgaaagg agcagaacca ggaaaacatt      6360
     gtacacagag actgatacat tgtggtacaa tcgaaggtaa tggacttctc cattagtgkc      6420
     aatgcaatgt ccctgaacaa tctgcaggga tctaaaaaac actatccaca agcagaagat      6480
     aaactgtggg agtaaaaaca ccgatgaaaa gcaactgctt gactacaggg gtggagggga      6540
     tatgactgag gagagactct aaatgaacac tctaatgcaa ataccaacaa catggaaatg      6600
     ggtttgaatc aagaacacat gtgataccca gtggaattgc gcgtgggcta tgggagaggt      6660
     ggtgggaggg aggggaggga agaaaagaaa atgatctttg tttccaatga ataatgtttg      6720
     gaaatgacca aataaaaatt aaaaaaaaaa                                       6750
//
ID   GOLEM       repbase; DNA   ; MAM   ; 3029 BP.
XX
AC   .
XX
DT   13-JAN-1998 (Rel. 3, Created)
DT   01-OCT-2005 (Rel. 5.09, Last updated, Version 7)
XX
DE   Autonomous DNA transposon; MARINER/POGO superfamily.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; 35S; GOLEM; MER17;
KW   MER29; MER7; MER7B; TIGGER3.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2724
RA   Drinkwater D.R., Burgoyne A.L., Skinner D.J.;
RT   "Two human repetitive DNA elements: A new interspersed repeat
RT   found in the factor IX gene, and a satellite 11 tandem repeat
RT   sequence..";
RL   Nucleic Acids Res 14, 9541-9541 (1986).
XX
RN   [2]
RP   1-2724
RA   Kaplan J.D., Duncan H.C.;
RT   "Novel short interspersed repeat in human DNA..";
RL   Nucleic Acids Res 18, 192-192 (1990).
XX
RN   [3]
RP   2713-2608
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [4]
RP   2327-2128
RA   Skalnik G.D., Strauss C.E., Orkin H.S.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter..";
RL   J. Biol. Chem 266, 16736-16744 (1991).
XX
RN   [5]
RP   2787-2607
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat..";
RL   Genomics 18, 322-328 (1993).
XX
RN   [6]
RP   2327-2128
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium
RT   reiteration frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [7]
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [8]
RP   1-3029
RA   Kapitonov V.V., Jurka J.;
RT   "GOLEM..";
RL   Direct Submission to Repbase Update (JAN-1998).
XX
RN   [9]
RP   1-3029
RA   Smit A.F.;
RT   "GOLEM..";
RL   Direct Submission to Repbase Update (JAN-1998).
XX
CC   [9] (Consensus)
XX
CC   23 bp terminal inverted repeats and TA target site [7].
CC   GOLEM's non-autonomous elements are GOLEM_A (MER7A) and GOLEM_B
CC   (MER7B) repeats.
CC   Orientation of the repeat has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [8].
CC   The ORF from pos 442-2307 encodes a protein 39% identical (57%
CC   similar) over the full-length to the Tigger1 product.
XX
FH   Key           Location/Qualifiers
FT   CDS           463..2304
FT                 /product="GOLEM_1p"
FT                 /translation="MAPKRTKSTANVASKRPHRVTDLETKLKVIKDYEGGK
FT                 SVMVIARQSGMSHSTIATILKNKNKVTEAVKGSASLKATRLTKIREGPISD
FT                 MEKLLMTWIEDQTQKHIPLSTMTITAKAKSLFAMLKEKAGPDYDVEFTASS
FT                 GWFKRFKNRYSLHNVKVSGESASADVKAAEEFLETLDKLIVEENYLPEQIF
FT                 NMDETSLFWKRMPERTFIHKEAKSMPGFKAFKDRITVLLGGNVAGYKLKPF
FT                 VIWHSENPRAFKHINKHTLPVYYRSNKKSWMTQLLFQDALLNCYASEMEKY
FT                 CLENNIPFKILLIVDNAPAHPPFIGDLHPNIKVVFLPPNTTSLIQPMDQGV
FT                 IAAFKAYYLRRTFAQAIAATEEDTEKTLMQFWKDYNIYDCIKNLAWAWGDV
FT                 TKECMNGIWKKTLKRFVRDFKGFAKDEEVAKINKAVVEMANNFNLGVDEDD
FT                 IEELLEVVPEELTNEELLELEQERIAEEEAREKETAGEEKEEPPRKFTVKG
FT                 LAEAFADLNKLLKKFENMDPNTERFSLIERNVHGALSAYKQIYDEKKKQTK
FT                 QTTMDIFLKRVTPPQEEPQAGPSGGIPEEGIVIIGDDSSMRVIAPEDLPVG
FT                 QDVEVEDSDIDDPDPV"
XX
SQ   Sequence 3029 BP; 968 A; 580 C; 659 G; 820 T; 2 other;
     cagtcatgcg ccgcataacg acgtttcggt caacgacgga ccgcatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgtcgt agctgtcgta       120
     acgtcatagc gcaacgcatt actcacgtgt ttgtggtgat gctggtgtaa acaaacctac       180
     tgcgctgcca gtcgtataaa agtatagcac atacaattat gtacagtaca taatacttga       240
     taatgataat aaatgactat gttactggtt tatgtattta ctatactata ctttttatcg       300
     ttattttaga gtgtactcct tctacttatt aaaaaaaagt ttactgtaaa acagtatgcc       360
     gtgttacacc ggcagcagcc tcatacatct cgtgtttacc gcgtctcttg attgcatcat       420
     tttctcttgt gcttgattta atctcgtgtt gttttgttca tcatggcccc taagcgtaca       480
     aaatccacgg ctaatgttgc cagtaagagg ccacatcgag tgactgacct ggaaacgaaa       540
     ttaaaagtga ttaaggacta cgaaggtgga aaatcagtga tggttattgc tcgccagtca       600
     ggcatgtccc attccaccat agctacgatc ttgaagaaca agaacaaagt gacagaagct       660
     gttaaaggat ctgcttcatt gaaggcaacg agactaacaa aaattcgaga agggcctata       720
     tcagatatgg agaaacttct aatgacctgg attgaagacc agacacagaa gcatatccct       780
     ctcagcacca tgacgatcac ggccaaagca aaaagtttgt ttgcgatgtt gaaagaaaag       840
     gctggacccg actacgatgt tgaatttact gctagctctg ggtggtttaa acgattcaag       900
     aatcgttatt cattacataa tgtgaaagtg agtggtgagt ctgcgagtgc tgatgtgaag       960
     gcagctgaag aatttttgga aactctagat aagctgattg tggaggaaaa ttacttgcca      1020
     gagcaaatct tcaatatgga tgaaacctcc ctattctgga aacggatgcc tgaaaggact      1080
     ttcatccata aggaggccaa gtcaatgcca ggtttcaagg cttttaagga caggataaca      1140
     gtcttgcttg ggggcaatgt tgcaggctac aaattgaaac cctttgtgat ctggcacagt      1200
     gagaacccca gggccttcaa gcatatcaat aagcacacac tgccagtgta ctacaggagc      1260
     aataagaagt catggatgac ccagctcctc ttccaagatg ccctcctgaa ttgctatgcc      1320
     agcgaaatgg agaagtactg tttggagaat aacatacctt tcaagatttt gcttattgtt      1380
     gataatgctc ccgcacatcc tccttttatt ggtgatcttc atcccaatat caaagtggtg      1440
     tttctccctc caaacaccac ctctttgatc caaccaatgg atcaaggagt tatagcagct      1500
     tttaaggcct actacctgag gaggaccttt gcccaggcta ttgctgcaac tgaggaagac      1560
     actgagaaga cactgatgca attctggaag gattacaaca tctatgactg catcaagaac      1620
     cttgcttggg cttggggtga tgtcaccaag gagtgtatga atggcatctg gaagaagaca      1680
     ctcaagaggt tcgtccgtga cttcaaagga tttgccaagg atgaggaggt tgcaaaaatc      1740
     aacaaggctg tggttgagat ggcaaacaac tttaacctgg gtgtggatga ggatgacatt      1800
     gaggagctcc tagaggtggt tcctgaggaa ttgactaatg aggagttgtt ggaactggaa      1860
     caggaacgca tagctgaaga agaggcaaga gaaaaggaaa ctgcaggaga agaaaaagaa      1920
     gaacccccaa gaaaattcac agtgaagggt ttagcagaag cttttgcaga cctcaacaag      1980
     ctccttaaaa agtttgaaaa catggacccc aacaccgaaa ggttttcatt aatagagagg      2040
     aatgttcatg gtgcattatc tgcttacaag caaatctatg atgaaaaaaa gaaacaaacc      2100
     aagcaaacca ccatggacat atttctgaaa agagtgacac ctcctcaaga agagcctcag      2160
     gcaggtcctt caggaggtat tccagaagaa ggcattgtta tcataggaga tgacagctcc      2220
     atgcgtgtta ttgcccctga agaccttcca gtgggacaag atgtggaggt ggaagacagt      2280
     gatattgatg atcctgaccc tgtgtaggcc taggctaatg tgtgtgtttg tgtcttagtt      2340
     tttaacaaaa aagtttaaaa agtaaaaaaa aaataawttt aaaaatagaa aaaagcttat      2400
     agaataagga tataaagaaa gaaaatattt ttgtacagct gtacaatgtg tttgtgtttt      2460
     aagctaagtg ttattacaaa agagtcaaaa agttwaaaaa attaaaaagt ttataaagta      2520
     aaaaagttac agtaagctaa ggttaattta ttattgaaga aagaaaaata ttttaaataa      2580
     atttagtgta gcctaagtgt acagtgttta taaagtctac agtagtgtac agtaatgtcc      2640
     taggccttca cattcactca ccactcactc actgactcac ccagagcaac ttccagtcct      2700
     gcaagctcca ttcatggtaa gtgccctata caggtgtacc attttttatc ttttataccg      2760
     tatttttact gtaccttttc tatgtttaga tatgtttaga tacacaaata cttaccattg      2820
     tgttacaatt gcctacagta ttcagtacag taacatgctg tacaggtttg tagcctagga      2880
     gcaataggct ataccatata gcctaggtgt gtagtaggct ataccatcta ggtttgtgta      2940
     agtacactct atgatgttcg cacaacgacg aaatcgccta acgacgcatt tctcagaacg      3000
     tatccccgtc gttaagcgac gcatgactg                                        3029
//
ID   CarLTR11a_LTR repbase; DNA   ; MAM   ; 662 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from Canidae.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Canidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia.
XX
RN   [1]
RP   1-662
RA   Smit A.F.;
RT   "CarLTR11a_LTR - ERV1 Endogenous Retrovirus from Canidae.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   ( 11 elements ) Some have the last 6 bp repeated; preference for
CC   XTAX TSD. related to "family-89"; 7-8% subst. close to -89.
XX
SQ   Sequence 662 BP; 213 A; 156 C; 132 G; 161 T; 0 other;
     tgatgtagga acgagttagg ggcagacggg gctaggcagg gaaagataag ggaaaggccc        60
     cagagtcagg ctcctaccca tcccaagaaa acagagataa gacagtaaaa acagaaaaaa       120
     taaacctggc tccctagctc caaaatgtta gggagtatcc ccctttaatg gctactaagt       180
     aatcacagaa actcaccaga ccacaaagaa atatgtcatt aaggtgttat caatagtccc       240
     tgctcaaacc aagacggcac aagaatctca aggccatggg ctacctgact aggctcacag       300
     aaatcccaga tgtagagaaa tattatggag gagatattaa ccagagagaa gggaacacct       360
     tgtttgggct catgatattt acaaaaacat cttgtttgtt attatgatag ttacaagtcc       420
     accatgtttg ttctaaatat ccaccctgat attgacaaga aatttaccaa gttccctggt       480
     cagtttccta taaaagacag accataaaag ccctcagtgg caaccctgtc gggacccctc       540
     tcacttctga gagctttctc tgtatctctg cttaataaac ttctatcgct ttgctcactc       600
     tctgttgtcc gcgagattca ttcttcgact ccgtgagaca agaaccaagc tctcccgtat       660
     ca                                                                      662
//
ID   CarERV2d2_LTR repbase; DNA   ; MAM   ; 726 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from
DE   carnivores.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Carnivora
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-726
RA   Smit A.F.;
RT   "CarERV2d2_LTR - ERV1 Endogenous Retrovirus from carnivores.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   4 bp TSD 11-12% subst.
XX
SQ   Sequence 726 BP; 215 A; 201 C; 133 G; 172 T; 5 other;
     tgatgaggga gcagaaggca agctgaggac aaagcacaag ctgacacccc gcaaccacct        60
     ccccactccc aggtgggata tgtgtgacat tcctcaggca ctcctggctg ccctaaaact       120
     aagggaaggg aaaaacaaat ggttaactga tagagatcac agtcctgcaa gacangagtc       180
     tccatcagtt taccaatgtc ttagtgattt acaaggaaaa agcattctta tcaatagcct       240
     aacttccaga gacccataac tcaatttcct ggagccctaa catcaccctc ccttccatga       300
     gtgatgtggg aaacagaggc agaagggaan gtaaacaaaa ttaaatttct ttatgacctg       360
     cagcccattg acaaggacct gngataggna gagtataaca ttcctccagg aagctcccaa       420
     ctgtcttaat gttaatgcct tactagaagg aaaaacaacc ttagcttgac aatagccagg       480
     cctccagtat cctgngagtc ttctttagca tatgaaagtc cttttggaca cctccctttt       540
     tccttacctc ccccaactcc caagtatata atcagccatt cctcacaacc ccagtgcagc       600
     agctctttct gcccacgggt cctgtccccg tgctttaata aaatcacctt tttgcaccaa       660
     agacgtctca agaattcttt cttggccgtc ggctccggac ctcaccaaca ttccaaaact       720
     acatca                                                                  726
//
ID   SINEC2A1_CF repbase; DNA   ; MAM   ; 196 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Young dog SINE element SINEC2A1_CF.
XX
KW   SINE; Non-LTR Retrotransposon; Interspersed Repeat; SINE element;
KW   SINEC2A1_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-196
RA   Jurka J., Gentles A.;
RT   "Young dog SINE element SINEC2A1_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 94%. This sequence, and
CC   SINEC2A2, supersede previous SINEC2_CF.
XX
SQ   Sequence 196 BP; 42 A; 57 C; 48 G; 49 T; 0 other;
     gggatccctg ggtggcgcag cggtttggcg cctgcctttg gcccagggcg cgatcctgga        60
     gacccgggat cgaatcccac gtcgggctcc cggtgcatgg agcctgcttc tccctctgcc       120
     tgtgtctctg cctctctctc tctctctctc tgtgtgacta tcataaataa ataaaaattt       180
     aaaaaaaaaa aaaaaa                                                       196
//
ID   ERV21_MD_I  repbase; DNA   ; MAM   ; 5707 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   02-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV21_MD, an endogenous class 1 retrovirus from Monodelphis
DE   domestica - consensus of internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-5707
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL   Initial data release, version 2.
XX
RN   [2]
RP   1-5707
RA   Gentles A., Jurka J.;
RT   "ERV21_MD, an ERV1 class endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 367-367 (2005).
XX
CC   [2] (Consensus)
XX
CC   Around 20 full length copies of this internal region in the
CC   genome have average similarity to consensus of ~95-96%. Despite
CC   this, no intact ORFs were reconstructed. The 465 LTR is
CC   ERV21_MD_LTR. Elements are flanked by 4 bp TSDs. This consensus
CC   was reconstructed from the June 2005 release of the 6.8X WGS
CC   sequence.
XX
SQ   Sequence 5707 BP; 1563 A; 1099 C; 1395 G; 1649 T; 1 other;
     tttgggggct cgccggtacc cctccacctt ggaacccccc ggacaggagg gcctaaggca        60
     ctgccttgga ccggaccttc aggtgagctg agtgttgtgt ggctgtgggt gcgaatggtg       120
     accgaatgtg tatgggggag acgacggacc cctgatgggc atatggctca gtggggcatt       180
     cgttcttgcg gtttaaacaa gagcccctat gctaagcccc agggcccgcc tttttctaag       240
     gcgagaggct tagcctcgag gcattggtct gaccctccca cctgtttctg agtgcggact       300
     ctacatggct acatttctga gctctcgaga gagccagtca gctcctggag gaagcgtttg       360
     tggtcagggg tggggaaagg ataaggtcca gggcaggtgc cgagatcaga actttcaggt       420
     ggttagaggc ccctgagaac agaggtctgt ctctgtcgca cggagttcga gtctccatct       480
     agttgtcagg ccctgagcac gagattccgc gtctctgtca ggtaccctgg cacttttggg       540
     acagggttcg agtccctgtc tagtgtgggg aaaggggttt ttcagtcccc tttttgggaa       600
     gatattgcac ccctaggaga gactggggga cgccccatga tctctaggtg atttttagac       660
     acactgaggt ttttttgcca cacggaggga tcgggtggcc agccgccggc tgcttgcccc       720
     tgacagatag ccggagatag ccgaaggact ccggaggcag ccgaagggag ctggccactg       780
     atgagtaatt gcgggtatca ggtttctttc tttactgcga aggaagccaa agcagcgggg       840
     aaaaaaaaaa agccgaaggt caggctgctt tgggcagtgg ttaacccttt ccttgcaact       900
     tcttggtctc aataatagaa aaccagtctg tttgtcaaac agcttgctta agggttttac       960
     ggtccttaca agtacatgcc aagaaatgag atcttaagat aagctcctag gatcggagca      1020
     gtttacgtgt ctgtgtctct gttatttgtc ttctggcttt tgctgtttgt ctcgtgtgtc      1080
     tttctgtatt tggatgcagg tatgtggatg tgtgggagag ggtgtcctat agggttcttt      1140
     gagtctttgt tgtggctgga ttaaaaaaaa gagggggggg agtttgggat gcagggtcac      1200
     aaaggagaat agattttgta cccctgctcc ctctgcctgc gttccaacca ggcaggctat      1260
     gatgaagtaa caacactgtg cctgctcctg caagcaggct tcagggcggg agagagagtg      1320
     caattgtccg ttcaatgatt tttccctcct tctccctttg gatgggcccc caaaggagcg      1380
     gaagagagaa aattctgagc agaaaaggga gattcttact ccacagttag aaactttctc      1440
     ttaaaattaa ttctcaaact gggaggattg ataatgattt tgatatggta caaatgtaat      1500
     ttcatgtatt actgtttgcc agttaaatgt gaaatgttgc cagattttta ttgagcacaa      1560
     aaactcatgg ttaggggttt gttttgttag gtcttgcaat gcataatgat ttcagtgaat      1620
     ttgagaattg tgtaaatgtg attgatagca agtctgatgc agagaggaaa gtttattctg      1680
     tatggacaga aattgtactg actactttat agatgtaaaa gtcattcaga gaaacttgtg      1740
     ttgttgaaaa gaacttattc tagaatttga atttgggaat ccttcaaatc acatttattt      1800
     taatggcagc aagaaattat attacacaca caagaagttt tttttttaaa gtggttaatc      1860
     tgtgcatggg attaatgaga taagtgctaa gaatttatgt tttacaaaag aggaaatttt      1920
     taaatgatgt tgtttttaat caaggttata tgtattgttt ttaaacgtgc aaaatgcata      1980
     ggaaggaatt tgtaatctag aaatgaacat gtatgtattc agatgccaaa tgctggaaat      2040
     gagtaatgct gagtgaatgc taaatatgta tgcattatat tatgaagagg attaagtttt      2100
     ccacctaaat aggttaaggg tatatgacat acaacctgta tgcccttaac aagataaatt      2160
     caaccagccc tgtaatcgag agggcttttc atgaggatta aatacagtct agcttcagat      2220
     atatcagaga ggtcaggctg gaacgccagg taacatgtag ctaactaggg aaaggtgatt      2280
     aagtacatgt gaaaggaaat aacttcatat cttataacct agctagataa gttaataatt      2340
     ggattttggg gtgtctggat tcattttatg aagtgctcca tttcaatgag agtaatgaat      2400
     agagatacta gttgatatta agatacaaca aattataaat tggaatttaa tcaagtatgt      2460
     agcaatattt tgagctacaa gaaaactaaa caggaggatc taaatgcttt gtacttcagt      2520
     ttggttacac actgaaagat tgctagagaa cttaatcaca gttatttgga agttgggaag      2580
     ttcaaactga aaatttactg agagtaaatt attatgaaag aggtttgata aattcaaaat      2640
     tttaaattga agtaagctca cttgttaaag aaggatggga caaggctgtt aagtaataaa      2700
     tctaaattga gccaaggagc cttrggataa attgctcaga agctattaac cccttccttg      2760
     cacacaggaa ggagaaggaa gtgcttataa ttattctaca ctgatactta tgaactgaca      2820
     taggggcttc aaagagttaa caaccgctgt gtgatagaac ttaaagatga gtatatctta      2880
     attgtagaaa cggaggtttt aaggtgctca agcaagcaaa tattgccagc cctgtctgac      2940
     caaaaaaagc ttgtttgcag ctgtggaatc tcactacaaa cattccaggt ccagaatgat      3000
     aaaatgagtt aagtgatatg taattgataa agttacctca tacgagttct ggggattgtt      3060
     ggttgatatt ttggttacat ttttaatctg tataaggata tatgtggcaa acaatagcca      3120
     aagaataggt agggtgttaa aaatgacata tatgtgaaaa tgcttgctca gaaatttatg      3180
     attattatgt gaatggctgc taaaatgtgt ttaagtatta tttggatgta aacaaaacct      3240
     tattgtaaac ctgactctac catatagttt gttacctcag tctaccaatt tgtgctatga      3300
     actgaaattt ataatggttg agctctatgc taaagactgt tcaatgatgt aatcctttaa      3360
     atcagaattc ttttgggtta ccgattagca gttgaagtga taccaggggg ctggttgttt      3420
     gacttatgat ggtaaaagca tgttagagaa agtggggagg tatgttgggt ttgaatttgg      3480
     aagaagggga ctttgattta gagtccataa agctttagta tgtgggtttg taaaggaagg      3540
     atggacggtg tgttctgctt ttaagcagag ggttttgaag gaacagaaag ggagagagaa      3600
     ggtgaaaggg aacagatgaa tgttctgctc tcacaattgg ctctttaact tagggataat      3660
     atataaagta atgtatgtgg gaaaatcaca cacgattctt taatttctct ggacagttac      3720
     cctgaagtga ttcctgcatg accttgtctt agtctttcag atggcctagg tccaggagat      3780
     gatacagccc tgatttatag ggaaccactt aattcagcac tcatgtgact acacctgatg      3840
     tgtaaataca tgaaaataat tgagtgatca gccttgtagg gatattaaag gcttgtttgg      3900
     gggtgtggag atttgttcct ggattgctga taagcaaatt tctctcagct gaaatggggg      3960
     aaaacttgtc ttttaaggaa aaagaaggct tctgggaccc agtggcaagg gctctaagga      4020
     gagaaaaagt cctaggatgg ttatagagaa ggcagcccaa ggctcacttt ggactgaatt      4080
     ttcctgacca tcctcaagtg gaacaacaat ggcaagtgac agccttgctt ggggtgtctt      4140
     ttgtgacttg gagatatttc cctttcaggg ccttcttcct tcgtgacaat tcccatgatc      4200
     agcacataat gcaaattgtg atattaaagt ttccatttcc tcaaacaacc ctaataattg      4260
     ggaattccca aattgttagg aacatgcttt gagaaataga tggagtttat tcctagatgg      4320
     cttgtatttg tagccttaat ttaccacagt tgaggtttgg ttcttgagct tgggaatata      4380
     gctcacagcc ttcttggttt ccccagcctc tggggtaagg aaatacatct gtaagatatt      4440
     gttactccag tgtttataga tgttatagtt aatgtgtatt ttgcaatggg atattcttta      4500
     acagaaacgt cacataccaa ctctgcaaac aactcaggaa gggatctgtt cctgtcagaa      4560
     gatgatttct gaggatgaag tctgttggtt aagataccca aatgcaaatg tgtgatgttc      4620
     attgctattg tattaatgtc ctgttcctat ctgctatttg ccccagtacc cttctctctt      4680
     aggggctgac ttccccttgt gaccagtctg ccaatcgagg gaaggagtga caggacaccc      4740
     ttcagatctc caggcagttc tccactgacc tgggaccctg gaatccactg aggacgcacc      4800
     cctaaagaca ctgtctgcag ccttccctcc ccctcgtatt cccctccctc tctctcctac      4860
     acataggtag ggacagctct acacccatgc tcagcactga agaaactaca gaagatctgg      4920
     acctccgccc tttttccctt agacatttgg agaggggagg ggatgggatg gcagggggca      4980
     ctgaaccagg tggggcctga gattctggcc ctccgggagg ctgtgtggtt cccctatgga      5040
     tggctgggct ggccagatgg cacgactcac cagaagcagt gggaagacag ctagcaaaag      5100
     gaatacatga cccactcgct tccattactt cactttctcc cccgcctctt ggtttccccc      5160
     tcccttgtca caaagtatcc ctcaactggg aaatacctta tcccacccgc aggagtgcac      5220
     tggctgtgcc cccgttctgg cctacagccc tgtgtctccc ctagctccct cactgcccgc      5280
     tgcaccccct cacaatagta ccccgagtga cctgctatgc caagcaggac ctcctcttcc      5340
     ttaaggaggg ggcctctgtg cagccttggg tgaggagtgc tgcttctatg ttaaccactc      5400
     agggattatt agggactccc tgagcaagct acagaaggtc tagaagccct gactgaagga      5460
     gggggaaact gccggcccct ggtacgcgac cttttctccc tagtcacgtt ccttatagga      5520
     tcccttataa tcttaaccct acttttgaca tttggcccct gtatctttaa cctccttatt      5580
     cggttcataa aagactgact agatgccatc caggtgttgg cccttcgaca acagtacagc      5640
     caagagccac gagctgcccc agtgggtggg ccttcccact gccccctaaa agaaaaagga      5700
     gttggga                                                                5707
//
ID   ERV15_MD_LTR repbase; DNA   ; MAM   ; 398 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV15_MD, a class 1 endogenous retrovirus from Monodelphis
DE   domestica - consensus of LTR sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV15_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-398
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-398
RA   Gentles A., Jurka J.;
RT   "ERV15_MD, a family of class 1 endogenous retrovirus from the
RT   opossum M. domestica.";
RL   Repbase Reports 5(11), 354-354 (2005).
XX
CC   [2] (Consensus)
XX
CC   LTR corresponding to ERV15_MD_I. This consensus was reconstructed
CC   from the June 2005 release of the 6.8X WGS sequence.
XX
SQ   Sequence 398 BP; 118 A; 86 C; 108 G; 84 T; 2 other;
     tgagggaggc ctgagcagga aactgcctgg ccttggaagt tcagaaccat aaatatgcca        60
     agatcccagc agcagtgggt accagataag aacttagagg ccaagcagac cccagtaaca       120
     taaaaatgtc aaggttccaa gaatagtatg taacagataa gggctgaggg gagccataca       180
     tgccggcaac gttccaacaa tggtatgtaa cagataaagg actggaaggg gggccataca       240
     tgctggaggg tatataagac tctgcattca cgagkgaagt cggaactctt gtgctgagct       300
     tcccctggtg crtaccagat caataaagcg acccttttgc ttgattgcat tgtctatggg       360
     tctttccttg gtggtgggcg aaaacccgga ccctaaca                               398
//
ID   MTV9LTR1_SM repbase; DNA   ; MAM   ; 773 BP.
XX
AC   M19965;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Suncus murinus endogenous mammary tumor provirus 5' LTR mRNA.
XX
KW   LTR Retrotransposon; Interspersed Repeat; endogenous retrovirus;
KW   MTV9LTR1_SM; SMLTR1; Long terminal repeat (LTR).
XX
OS   Suncus murinus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Soricidae; Crocidurinae; Suncus.
XX
RN   [1]
RP   1-773
RA   Yanagawa I.S., Murakami A., Hoshino M., Tanaka H.;
RT   "Structural and functional analysis of long terminal repeats of
RT   Suncus murinus mammary tumor virus.";
RL   J. Virol 62, 1235-1242 (1988).
XX
DR   GenBank; M19965; Positions       1     773.
XX
SQ   Sequence 773 BP; 187 A; 213 C; 169 G; 204 T; 0 other;
     cgtcaagatc cgtcaagatt gtgcttgttg tgtgggaagc cgctggataa gtactagcct        60
     ttcccccaca ttgctgacct ttgactggct gcttaactgc ttgaaagctt gcagcttgtg       120
     cttaatggga acagaaacca gacatccgcg aagcccaggc caacaggaaa ccagcagctc       180
     caaaaatatc actagggaat gtacagctct tgcccaccac tcactctgat caatgcaaac       240
     atggccatga gatttatgag tactctgagt ctttaggtta gcattttcca gacaaagaaa       300
     taatgggttt ccaatattaa ccagaacaaa cggtgtgcgc aaatgtttga tgtataacat       360
     gtttatgtaa aaggagcttg cattccatcc aagtgtgtac gtgacttccg cgttctgtgc       420
     tgcgaccatt tccccctctc ctattaaggt catgaattgt gctgttcatc cccaattgga       480
     tgcctcgaaa gaacaacctg agctgggatt tccccattgg ttcccggacc taagcccctc       540
     acccctttgt tataagacta cttatacccc tggcttatgc tgaataaacg ctcttgatcc       600
     ttcacggtgt catgagtcat tactaacctt ttgcctccac aggtactcaa gagagcccga       660
     cccaccacgt tgtgcgaacg cttgtaggaa cactcctcgg ccgctggccg gcttggagct       720
     gcttcggagg cccccccctc agcgtttcgc atctggcgcc caacgtgcgt gtc              773
//
ID   ERV1_MD_LTR repbase; DNA   ; MAM   ; 752 BP.
XX
AC   .
XX
DT   17-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   ERV1_MD, a young endogenous retrovirus from Monodelphis domestica
DE   - consensus of LTR sequence.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; ERV1_MD_LTR.
XX
OS   Monodelphis domestica
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
XX
RN   [1]
RP   1-752
RG   The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
RG   Monodelphis domestica sequencing consortium;
RT   "Monodelphis domestica WGS sequence.";
RL    Initial data release, version 2.
XX
RN   [2]
RP   1-752
RA   Gentles A., Jurka J.;
RT   "ERV1_MD, a young class 2 endogenous retrovirus from the opossum
RT   M. domestica.";
RL   Repbase Reports 5(11), 364-364 (2005).
XX
CC   [2] (Consensus)
XX
CC   The corresponding internal sequence is deposited as ERV1_MD_LTR.
CC   This consensus was reconstructed from the June 2005 release of
CC   the 6.8X WGS sequence.
XX
SQ   Sequence 752 BP; 167 A; 209 C; 150 G; 225 T; 1 other;
     tgtagcagcc cagcccatag acgttgtggg gaagcaagga atgtgagtga gcacatggcc        60
     attatgtgca tggcaatgaa ctttattgcc agcatggctg aagtttaggc gcgaaacctt       120
     gctttcctgt gtcccactca cctgaggagt aaaaccccac cttcaccttg tcataggttg       180
     tattatccaa taggggtacc ccagataact catccatatg tattgaggta tcatataact       240
     gttcaatatg tattgagctg gcatgactat aaataaacca gctccactaa gctccgccca       300
     ctggttcagg attcccgggt ctggcaagta gcaacttctc ccctgtccct ctctctctat       360
     ctttcttact aaggcctggt ccttagacca ggcctgcctt actaaggcct ggtcattagt       420
     ccaggcctgc cttacttcct ctctttctcc taatgctatc tagcattatc tacctcttgt       480
     agttcctagt ctcctttcca tctgcactag ctttatcctc tgaccrgtac ggtgttaaaa       540
     gaggatcatt gggtggtttc agcctgaata ttcacaccca gtggtcggag cttagctgtg       600
     gctcatacaa ataatattcg tctactgact cggttactca catctctaaa gtcggctcgt       660
     tcacgccctt cgcgggataa aaacttcttc tctatctcta tcctctcaaa ttcttccccc       720
     ccttgcagcc tcttgcaggc cgggaggttg ca                                     752
//
