ID   Tigger3c    repbase; DNA   ; PRI   ; 602 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner DNA transposon from primates.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; GOLEM; Tigger3c.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-602
RA   Smit A.F.;
RT   "Tigger3c - Mariner DNA transposon from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   (MER7C)  15% div.
XX
SQ   Sequence 602 BP; 166 A; 139 C; 114 G; 183 T; 0 other;
     cagtcatgcg ccacataacg acgtttcggt caacgacgga ccgcatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgtcgt agccgtcgta       120
     acgtcgtagc gcaattactt tatttttaaa taaatttagt gtagcctaag tgtacagtgt       180
     ttataaagtc tacagtagtg tacagtaatg tcctaggcct tcacattcac tcaccactca       240
     ctcactgact cacccagagc aacttccagt cctgcaagct ccattcatgg taagtgccct       300
     atacaggtgt accatttttt atcttttata ccgtattttt actgtacctt ttctatgttt       360
     agatatgttt agatacacaa atacttacca ttgtgttaca attgcctaca gtattcagta       420
     cagtaacatg ctgtacaggt ttgtagccta ggagcaatag gctataccat atagcctagg       480
     tgtgtagtag gctataccat ctaggtttgt gtaagtacac tctatgatgt tcgcacaacg       540
     acgaaatcgc ctaacgacgc atttctcaga acgtatcccc gtcgttaagc gacgcatgac       600
     tg                                                                      602
//
ID   LTR7Y_LTR   repbase; DNA   ; PRI   ; 472 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from primates.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon; LTR7B; LTR7Y_LTR.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-472
RA   Smit A.F.;
RT   "LTR7Y_LTR - ERV1 Endogenous Retrovirus from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   2% div; 5 bp TSD, but HERV-H internal. Notice TG...AA like LTR7A.
XX
SQ   Sequence 472 BP; 119 A; 153 C; 79 G; 121 T; 0 other;
     tgtcaggcct ctgagcccag gccaggccat cgcatcccct gtgacttgca cgtatacatc        60
     cagatggcct gaagtaactg aagatccaca aaagaagtaa aaacagcctt aactgatgac       120
     attccaccat tgtgatttgt tcctgcccca ccctaactga tcaatgtact ttgtaatctc       180
     ccccaccctt aagaaggtac tttgtagtct cccccaccct taagaaggtt ctttgtaatt       240
     ctccccaccc ttgagaatgt actttgtgag atccacccct gcccaccaga gaacaacccc       300
     ctttgactgt aattttccat taccttccca aatcctataa aacggcccca cccctatctc       360
     ccttcgctga ctctcttttc ggactcagcc cgcctgcacc caggtgaaat aaacagccat       420
     gttgctcaca caaagcctgt ttggtggtct cttcacacgg acgcgcatga aa               472
//
ID   Tigger3b    repbase; DNA   ; PRI   ; 1231 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner DNA transposon from primates.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; GOLEM_B; Tigger3b.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-1231
RA   Smit A.F.;
RT   "Tigger3b - Mariner DNA transposon from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   (MER7B)	 15% div.
XX
SQ   Sequence 1231 BP; 399 A; 218 C; 235 G; 375 T; 4 other;
     cagtcatgcg ccgcataacg acgtttcggt caacgacgga ccgcatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgtcgt agccatcgta       120
     acgtcgtagc gcaacgcatt actcacgtgt ttgtggtgat gctggtgtaa acaaacctac       180
     tgcgctgcca gtcgtataaa agtatagcac atacaattat gtacagtaca taatacttga       240
     taatgataat aaacgactat gttactggtt tatgtattta ctatactata ctttttatcg       300
     ttattttaga gtgtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagcctc       360
     aggcaggtcc ttcaggaggt attccagaag aaggcattgt tatcatagga gatgacagct       420
     ccatgcgtgt tattgcccct gaagaccttc cagtgggaca agatgtggag gtggaagaca       480
     gtgatattga tgatcctgac cctgtgtagg cctaggctaa tgtgtgtgtt tgtgtcttag       540
     tttttaacaa aaaagtttaa aaagtaaaaa aaaaataawt ttaaaaatag aaaaaagctt       600
     atagaataag gatataaaga aagaaaatat ttttgtacag ctgtacaatg tgtttgtgtt       660
     ttaagctaag tgttattaca aaagagtcaa aaagttwaaa aaattwaaaa gtttataaag       720
     taaaaaagtt acagtaagct aaggttaatt tattattgaa gaaagaaaaa tattttwaat       780
     aaatttagtg tagcctaagt gtacagtgtt tataaagtct acagtagtgt acagtaatgt       840
     cctaggcctt cacattcact caccactcac tcactgactc acccagagca acttccagtc       900
     ctgcaagctc cattcatggt aagtgcccta tacaggtgta ccatttttta tcttttatac       960
     cgtattttta ctgtaccttt tctatgttta gatatgttta gatacacaaa tacttaccat      1020
     tgtgttacaa ttgcctacag tattcagtac agtaacatgc tgtacaggtt tgtagcctag      1080
     gagcaatagg ctataccata tagcctaggt gtgtagtagg ctataccatc taggtttgtg      1140
     taagtacact ctatgatgtt cgcacaacga cgaaatcgcc taacgacgca tttctcagaa      1200
     cgtatccccg tcgttaagcg acgcatgact g                                     1231
//
ID   HERV70_LTR  repbase; DNA   ; PRI   ; 4 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   07-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from primates.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-4
RA   Smit A.F.;
RT   "HERV70_LTR - ERV1 Endogenous Retrovirus from primates..";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Entry deleted Jun 2004; it contains a BNIP3 processed
CC   pseudogene, thus masking this gene in human. The element is also
CC   not autonomous and doesn't deserve the name HERV and the
CC   consensus was created mostly from a segmental duplication
CC   expanse on chromosome 19.
XX
SQ   Sequence 4 BP; 4 A; 0 C; 0 G; 0 T; 0 other;
     aaaa                                                                      4
//
ID   L1Pt        repbase; DNA   ; PRI   ; 902 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   L1 Non-LTR Retrotransposon from Pan troglodytes.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-902
RA   Smit A.F.;
RT   "L1Pt - L1 Non-LTR Retrotransposon from Pan troglodytes.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   lib20040702.
XX
SQ   Sequence 902 BP; 346 A; 174 C; 187 G; 195 T; 0 other;
     ctaatatcca gaatctacag tgaactcaaa caaatttaca agaaaaaaac aaacaacccc        60
     atcaaaaagt gggcgaagga catgaacagg cacttctcaa aagaagacat ttatgcagcc       120
     aaaaaacaca tgaaaaaatg ctcatcatca ctggccatca gagaaatgca aatcaaaacc       180
     actatgagat atcatctcac accagttaga atggcaatca ttaaaaagtc aggaaacaac       240
     aggtgctgga gaggatgtgg agaaatagga acacttttac actgttggtg ggactgtaaa       300
     ctagttcaac cattgtggaa gtcagtgtgg cgattcctca gggatctaga actagaaata       360
     ccatttgacc cagccatccc attactgggt atatacccaa atgactataa atcatgctgc       420
     tataaagaca catgcacacg tatgtttatt gcggcattat tcacaatagc aaagacttgg       480
     aaccaaccca aatgtccaac aatgatagac tggattaaga aaatgtggca catatacacc       540
     atggaatact atgcagccat aaaaaatgat gagttcatat cctttgtagg gacatggatg       600
     aaattggaaa ccatcattct cagtaaacta tcgcaagaac aaaaaaccaa acaccgcata       660
     ttctcactca taggtgggaa ttgaacaatg agatcacatg gacacaggaa ggggaatatc       720
     atactctggg gactgtggtg gggagggggg aggggggagg gatagcattg ggagatatac       780
     ctaatgctag atgacgagtt agtgggtgca gcgcaccagc atggcacatg tatacatatg       840
     taactaacct gcacaatgtg cacatgtacc ctaaaactta aagtataata aaaaaaaaaa       900
     aa                                                                      902
//
ID   CERV1_INT   repbase; DNA   ; PRI   ; 7337 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   10-OCT-2005 (Rel. 9.07, Last updated, Version 2)
XX
DE   Chimpanzee endogenous retrovirus CERV1 - a consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; CERV1_INT;
KW   Internal sequence of chimpanzee endogenous; LTR; PtERV1.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-7337
RA   Skaletsky H., Hughes F.J., Page C.D.;
RT   "Consensus sequence of an endogenous retrovirus CERV1.";
RL   Repbase Reports 4(7), 189-189 (2004).
XX
RN   [2]
RP   1-7337
RA   Yohn C.T., Jiang Z., McGrath S.D., Hayden K.E., Khaitovich P.,
RA   Johnson M.E., Eichler M.Y., McPherson J.D., Zhao S., Pääbo S.,
RA   Eichler E.E.;
RT   "Lineage-specific expansions of retroviral insertions within the
RT   genomes of African great apes but not humans and orangutans.";
RL   PLoS Biol 3(4),  (2005).
XX
CC   [1] (Consensus)
XX
CC   Internal sequence of an endogenous retrovirus with ORFs
CC   for gag (961-2370), pol (3042-5624) and env (5618-7288). CERV1
CC   is absent from the human genome. It is similar to an
CC   uncharacterized interspersed repeat mulatta and Papio anubis
CC   genomes. CERV1, first published in Repbase Reports, also exists
CC   under
CC   another name PtERV1 reported by another group in 2005 (ref. 2).
XX
SQ   Sequence 7337 BP; 1892 A; 2103 C; 1788 G; 1546 T; 8 other;
     tctgggggcc cgtccgggat tccccaagcc caccagaccc ctggtcaacg gatctgctag        60
     gatcgatcta ctgataggtg agctggctcg tctccgtttg tctgtctgtg tctgttctga       120
     atccgaatct gtgactcgcg aggtctgaaa ctggagctgg cacagtcctg gcggacgcgc       180
     tataggacgg ccagcggaga ccggtgggag acgtcccctg gctctcatct gatctatatt       240
     gcgatctgag ctgccccggt ttggcgggca gcagccgtat ctgagctgcc cggttgatcg       300
     ggcagcatct gtctctgatc tgagctgccc cggttgcggc agcagcctat ctgactgccc       360
     ggttgggcgg gcagcagctg tctctgatct gagctgcccc agcagctgtc tctgatctga       420
     gctgccagta nctgtctctg atctgagctg ccccggtttg gcgggcagca gctgttcatc       480
     tgagctgccc ngttnggcng gcagcanctg tctctgatct gagctgcccg gcgggcagca       540
     gctgtctctg atctgagctg ccccggtttg gcgggcagca gctgtctctg atctgagctg       600
     ccccagtgca gccgtatctg agggcagctg tctctgatct gagctgcccg gcgggcagca       660
     gctgagctgc cccggtttgg cgggcagcag ctgtctctga tctgcccggt tnggcgggca       720
     gcagctgtct ctatctgagc tgccccggtt tggcgggcag cagctgtctc tgatctgagc       780
     tgccccggtt tggcgggggc tgccccagtg cgntcggctg ccccggggcg cagctgcctc       840
     tgaccagggc tgccaaagtg cgcctgcgat tagatatcat taataagttc agatcagatt       900
     tcctttacag ggattcaaac ccacattcct ttacaggaag agactacaaa ttattacagg       960
     atgggtaata cccagagcac tcctctatct ctccttacga gtaatttcaa agaagttaga      1020
     gcaaggggcc atgatcttgg tatagaaatc aggaaaggaa agctaattac tctgtgtcgc      1080
     tccgaatggc ctgcctttga tgtggggtgg ccgcccgaag ggaccttccg acttgctgtc      1140
     atcactaggg taaagtccaa gattttccta cctgggcgtg cgggccactt agatcaaatc      1200
     ccatatatcc tcatatggca ggaccttgtt gagaacccgc ctccttggct gtcccctttc      1260
     caattggcct ctgaaccctg taaggcacta gttgctcgac cactaaaatc caagcaacca      1320
     actgcccccc ccatcctgtt ctacctgaca gcggggaccc actgttcaca gaaccccctc      1380
     cgtacccctc cgggccccag gccccagccc ccctggctga gctgcgggag ggagcaggcg      1440
     gacgggaggc ggccggcaca cacgggcccg ctgaaaggga aagtaacttt gaagggccgg      1500
     cggggaggac gcgagggcgc acttcgcgga ctagcccccc ctcagccgcc tgactccacg      1560
     gtggctttac cccttcggga aataggaccc ccagatgaca caggaatccc caggctccag      1620
     tactggccat tctccaccag tgatctgtat aactggaaaa ctcagagtgc tcggttttca      1680
     gacaacccca aagatttact ggctttacta gatagtgtca tgttcaccca ccagcccact      1740
     tgggatgatt gtcagcagct cctccgaatt ttgttcacca cggaagagcg agagagaata      1800
     cagatagaag ctagaaagct ggtcccgggg gacgacggtc aaccgactgc caaccccgac      1860
     ctcataaacg caacctttcc tctgaccagg ccggcgtggg actacaacac ggcagaaggt      1920
     aggggacggc tacaccttta tcgccagact ctaatggcag gtctccgggc agctgctcgc      1980
     aagcccacta atttggctaa agtatattct attctgcagg gaaagacaga gagcccagct      2040
     acctacttag aaagattaat ggaagctttt agacagtaca cccccataga tccagaggct      2100
     ccaggaagtc aggcagctgt tgtaatgtct ttcgtaaatc aggcagcccc agatattaag      2160
     agaaaactcc agaaattaga agacttggag ggaaagcgga ttcaggacct ccttcagata      2220
     gcccagcggg tttacaataa cagagatact ccagaggaaa agcaatttaa ggccactgaa      2280
     aaaatgacca aggtcctggc agcagtggta cagaaagagc atctacagcc agagtacacc      2340
     caacctaggc ggccccccgg catgataatc tgagcaaaga ccaatgtgcc tattgtaagg      2400
     gggctggcca ctaggtaaga gactgcccca aaaagaaacc acgaggacag ggacccgcct      2460
     aggtctacac ccgtactagt cactcaagac gaagactagg gaagacgggg ttcggacccc      2520
     ctccccgaac ctagggtaac tttgcaagtg gaggggtccc cagtccagtt cttggtcgat      2580
     acnggagcac agcactcggt cttagttaaa actaatggga aattatcctc caaatcctcg      2640
     tgggtacaag gggccacagg agttaagaaa tacccatgga caacacaaag aacagtaaac      2700
     ctcggagcca agaatgtaac ccattctttc ctggtcatcc ctgagagccc ctgtccccta      2760
     ttggggagag acctgctaac taaaatggag cacagatcca tttcctccct gaggggcccg      2820
     tcgtgaccaa ctcccacaat cgaccgtgtc ctcctgacta taaacctaga agatgagtac      2880
     cggctccacc aggagaaagc ggcccctgac caggacatag caactggctc cagcatatcc      2940
     agaagcgtgg gcggaaacgg ggggcttagg tctagcaaaa cacctcctgc cttatttatt      3000
     gaacttaagc ctggacagac ccctgcggta cgccataccc gatgccccta gagccaagaa      3060
     gttcctccag cccccacccg agagacacaa gaagacagac accctactca catcaatggt      3120
     acgttactct gaccgaggaa gaacctaacc gccaactgct taagggaggg cagcgctggc      3180
     taacagacgc ccggaaacaa actgttctgc agatccccag gccacaatcc acccgacaag      3240
     tgagagaatt cctggggtcg gcaggatttt gcagactatg gatacctggg ttcgcagaac      3300
     tggctaaacc cttgtatcag gcaacacggg ggcaacagcc atttaattgg acagacgaag      3360
     ccgagttggc cttccaacag attaaaaccg ccctactctc cgcgcctgca ctaggactac      3420
     ctgatgttac caagcccttc cacttatacg tggatgagaa taagggtgtc gccaaggcgg      3480
     taataactca gaacttaggc ccctggcgga ggccagttgc ctacctgtca aagaagttag      3540
     acccagtagc tgccgggtgg cccccttgtc tccgaatgat tgcggccacg gctctgatgg      3600
     tgcaagatgc tgataaactt gtcatggggc aagaattgcg ggtcgttact ccacatgcca      3660
     tcgaaggtgt actcaaacag ccacctaatc gatggatgag taacgcccgg ctcacccact      3720
     accaaggact actactaaat cctctcagga taattttcct gcccccaacg accttaaacc      3780
     ctgcctcgct gctgcccaac ccggacctgg acgccccact ccatgactgc accaagatac      3840
     tagctcaggt gcacggagtt cgagaagacc tgcaggaccg cccacttcct gacgccgacc      3900
     tcgtctggtt cactgatggg agcagcttca tgcatcaagg ccagaggtac gctggagcgg      3960
     cagtaacttc agagactgag gtaatctggg cggaacccct gcccccgggg acatcggccc      4020
     agaaggccga actgatagcg ctcacccaag ctcttacctt aggggcgggg aaaaagctga      4080
     cagtatatac agacagccga tatgcttttg caacggcgca tatacatggg gccatttaca      4140
     gggagcgagg gttactgacg gctgaaggaa aagagataaa aaacaagcaa gagatcctag      4200
     ccctgctaac agccctatgg aggccagaaa aattagccat tgtacattgc ccagggcatc      4260
     agaaactaac tactccaact gctcaaggca actttctggc agaccaaact gcaaggaatg      4320
     tggcgaaggc tcccagccaa ctccttgcac tccagctccc tgacccgggc ccccgggact      4380
     tgccatattt ccctgaatat tcagaacaag atctccagtg gattgacaaa cttcccctga      4440
     aacaaatcca gaatgggtgg tggactgata ctaatgacca aaccatccta ccagaaaaat      4500
     taggacaaca ggtgttagaa cacatccacc gaaccaccca cctgggggcc cggcggatga      4560
     tagacctgat cagacgctcc aagctcaaaa tcagacatat agctgagacg gccagcagta      4620
     tcgtgacaag ttgcaaagtc tgccagctta acaacgcata cccccaatct caagctgcaa      4680
     caggaacaag gctcagggga accaggcccg gtatctactg ggaagtagat tttactgaaa      4740
     taaagccagg aaagtacggg taccggtact tacttgtctt tgtagatact ttttcagggt      4800
     ggactgaagc attcccaacc aaaagagaaa ctgctcaggt cgtagcaaag aaaattctgg      4860
     aagatatcct tcccaggtat ggcttcccca tccagatagg gtcagataat gggcccgctt      4920
     tcgtcgctaa ggtaagtcag gacttggctt ccatccttgg ggcaaattgg aaactacatt      4980
     gcgcttacag gccccagagt tcaggacagg tagaaaggat gaatcggacc ttaaaagaga      5040
     ccttaactaa attgactata gagactggcg ctaattgggt agtccttctc ccctatgctc      5100
     tgttccgggc ccgtaatacc ccttacaaac tgggcctcac cccttacgaa atcatgtatg      5160
     gcagacctcc acccctggtt cctagcttaa aagatgacct gcttaagtct gaaacagaaa      5220
     atgtctctga attcttattt tccttacaag ccttacagaa aattcaccaa gaaatctggc      5280
     ccaagctgaa agagctatat gagaccagtc ccccaccgac accccatccg taccagccgg      5340
     gagactgggt cctggttaag cgacaccgac aagagaccct agagcccagg tggaaaggac      5400
     cactccaagt actcctgacc acacccaccg ccctgaaggt agaaggcatt gcgtcgtgga      5460
     tccactacac ccacgtcaag ccagtggacc caacctccga ccttctgggg ccaatcacgg      5520
     cggcggcggc tgaagcaccg gacacgtgga ctgtggacag agctaagaac aaccccttaa      5580
     aactcaccct gcgccggcag cataactcac tgcaaacatg cagttaggta gtctaactct      5640
     aacattagtc gccctagtgg ccgctgggga aaacataaag ccagctccta atccctttgt      5700
     ctggagattc tggctttatg aaaaccaaac ccaccctggg caacctcata agcccgggaa      5760
     attagtggcc agtgcagatt gcccctcctc agggtgcaat agcccaattt tactaaattt      5820
     taccgatttc ccagtagcca aaccagtggc accaataata tgcttcgagt atgatcagac      5880
     tgaatacaat tgtaagcact attggtggca ccaaagtgcc ggctgccctt ataactattg      5940
     taacatccat aaataccaat ggtggggtgg agaagaacag atagatccca gatggccctt      6000
     ccatcgcaga cgagatagag acctttcata tacatggata gttagagacc cctggaactc      6060
     ccgctggacc acgcctcaac acggggctgt atactactcc tccgcctcca catggcctag      6120
     cagtcacctc tatctgtggc ggggtctagt gcaggtacgg cccctggtcc atggaaatat      6180
     ccagcgacaa gaaaaccgcc tgacacaaga tttacgtcct ttttcctggt taaaattatt      6240
     gcaagaagga ttagaacttg ccaaccttac aggacttcac agcctgtctg gctgctttct      6300
     atgtgccact ctagggcgtc caccgctaac cgctgtcccc ctgccatggg gatcatccac      6360
     ctctgcccaa gctaacaacc accaaaacct ctcatatgcc cctatcccta acgtgccact      6420
     atacctaaac cccagtcaag agaagtttcc ctactgtttc tcaggaacta attccagcct      6480
     ctgcaacatc actgcaacgc cccctaacat caccttaagg gctccgtcag gcatattctt      6540
     ctggtgtaat ggaacattat ctaaaaacct atcaagcccc tctgttacca acctactgtg      6600
     tcttcctgtc acattagttc cccggttaac tctacttact gccggcgagt tcctagggta      6660
     taccggtaac tggactagtg ctgttattca cccagaccct agaccgagac ctgcacgagc      6720
     catatttctc cccctcattg caggaatctc cctcaccgca tccttcatgg cggccggact      6780
     ggctggggga gccctaggtc acacccttat agaaagtaac aagctgtacc aacaatttgc      6840
     cgttgctatg gaggagtcag ctgagtccct tgcctccctc cagcggcagc tcacgtccct      6900
     agcacaggta accttgcaga accggagggc cttagaccta ctcactgctg aaaaaggggg      6960
     aacgtgtatg tttctaaagg aagactgttg tttctacata aatgaatcag gactcgtgga      7020
     agaccgagtc caacagttac gcaagttaag cacagaagta agaacacggc agtttgcttc      7080
     agctgcagac caatggtgga actcatctat gttttctctg ttagccccct tccttggacc      7140
     cctgctgagt ctactatttc tgcttaccgt aggaccttgt gttgttaaca gaattttgcg      7200
     gttcgttaaa gaaaggttta acactgtaca actcatggtc ctcagagccc aataccaacc      7260
     tgtaaacgct gaaacagaat cagacttata agacccaaga ttggctctaa aaaatacctg      7320
     aaaagaaagg gggggaa                                                     7337
//
ID   Tigger3d    repbase; DNA   ; PRI   ; 321 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner DNA transposon from primates.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; GOLEM_C; Tigger3d.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-321
RA   Smit A.F.;
RT   "Tigger3d - Mariner DNA transposon from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 321 BP; 105 A; 63 C; 67 G; 86 T; 0 other;
     cagtcatgcg ccgcataacg acgtttcggt caacgacgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc atatatagaa acctgatata tggcacttga tattggcatt       120
     gcagatcaag taggggaaat gactgatatt cagtaatggt gctgggacat ttggttttcc       180
     atatgaaaaa atatatataa ataaaaatat atataccatc taggtttgtg taagtacact       240
     ctatgatgtt cgcacaacga caaaatcgcc taacgacgca tttctcagaa cgtatccccg       300
     tcgttaagcg acgcatgact g                                                 321
//
ID   L1Pt_5end   repbase; DNA   ; PRI   ; 2137 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   L1 Non-LTR Retrotransposon from Pan troglodytes.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-2137
RA   Smit A.F.;
RT   "L1Pt_5end - L1 Non-LTR Retrotransposon from Pan troglodytes.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2137 BP; 733 A; 512 C; 532 G; 360 T; 0 other;
     gggggaggag ccaagatggc cgaataggaa cagctccggt ctacagctcc cagcgtgagc        60
     gacgcagaag acgggtgatt tctgcatttc catctgaggt accgggttca tctcactagg       120
     gagtgccaga cagtgggcgc aggccagtgg gtgcgcgcac cgtgcgcgag ccgaagcagg       180
     gcgaggcatt gcctcacctg ggaagcgcaa ggggtcaggg agttcccttt ccgagtcaaa       240
     gaaaggggtg acggacgcac ctggaaaact cgggtcactc ccacccgaat attgcgcgtt       300
     tcagaccggc ttaaaaaacg gcgcaccacg agactatatc ccacacctgg ctcggagggt       360
     cctacgccct cggaatctcg ctgattgcta gcacagcagt ctgagatcaa actgcaaggc       420
     ggcagcgagg ctgggggagg ggcgcccgcc attgcccagg cttgcttagg taaacaaagc       480
     agccgggaag ctcgaactgg gtggagccca ccacagctca aggaggcctg cctgcctctg       540
     taggctccac ctctgggggc agggcacaga caaacaaaaa gacagcagta acctctgcag       600
     acttaaatgt ccctgtctga cagctttgaa gagagcagtg gttctcccag cacgcagctg       660
     gagatctgag aacgggcaga ctgcctcctc aagtgggtcc ctgacccctg acccccgagc       720
     agcctaactg ggaggcaccc cccagcaggg gcacactgac acctcacacg gcagggtatt       780
     ccaacagacc tgcagctgag ggtcctgtct gttagaagga aaactaacaa acagaaagga       840
     catccacacc gaaaacccat ctgtacatca ccatcatcaa agaccaaaag tagataaaac       900
     cacaaagatg gggaaaaaac agaacagaaa aacaggaaac tctaaaatgc agagcgcctc       960
     tcctcctcca aaggaacgca gttcctcacc agcaacggaa caaagctgga tggagaatga      1020
     ttttgacgag ctgagagaag aaggcttcag acgatcaaat tactctgagc tacgggagga      1080
     cattcaaacc aaaggcaaag aagttgaaaa ctttgaaaaa aatttagaag aatgtataac      1140
     tagaataacc aatacagaga agtgcttaaa ggagctgatg gagctgaaaa ccaaggctcg      1200
     agaactacgt gaagaatgca gaagcctcag gagccgatgc gatcaactgg aagaaagggt      1260
     atcagcaatg gaagatgaaa tgaatgaaac gaagcgagaa gggaagtcta gagaaaaaag      1320
     aataaaaaga aatgagcaaa gcctccaaga aatatgggac tatgtgaaaa gaccaaatct      1380
     acgtctgatt ggtgtacctg aaagtgatgc ggagaatgaa accaagttgg aaaacactct      1440
     gcaggatatt atccaggaga acttccccaa tctagcaagg caggccaacg ttcagattca      1500
     ggaaatacag agaacgccac aaagatactc ctcgagaaga gcaactccaa gacacataat      1560
     tgtcagattc accaaagttg aaatgaagga aaaaatgtta agggcagcca gacagaaagg      1620
     tcgggttacc ctcaaaggga agcccatcag actaacagcg gatctctcgg cagaaaccct      1680
     acaagccaga agagagtggg ggccaatatt caacattctt aaagaaaaga attttcaacc      1740
     cagaatttca tatccagcca aactaagctt cataagtgaa ggagaaataa aatactttac      1800
     agacaagcaa atgctgaccg attttgtcac caccaggcct gccctaaaag agctcctgaa      1860
     ggaagcgcta aacatggaaa ggaacaaccg gtaccagccg ctgcaaaatc atgccaaaat      1920
     gtaaagacca tcaagactag gaagaaactg catcaactaa cgagcaaaat caccagctaa      1980
     catcataatg acaggatcaa attcacacat aacaatatta actttaaatg taaatggact      2040
     aaattctcca attaaaagac acagactggc aagttggata aagagtcaag acccatcagt      2100
     gtgctgtatt caggaaaccc atctcacgtg cagagac                               2137
//
ID   Charlie12   repbase; DNA   ; PRI   ; 2873 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   hAT DNA transposon from primates.
XX
KW   hAT; DNA transposon; Interspersed Repeat.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-2873
RA   Smit A.F.;
RT   "Charlie12 - hAT DNA transposon from primates..";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
CC   Autonomous elements that gave rise to MER30
CC   elements. Only two copies in genome (on 2q37.3 and 7q22.1).
CC   Reconstructed from these; only MER30-like sequences are
CC   consensus. Product =>55% similar to Charlie8. See
CC   Charlie12_GG in chicken.lib (March 2002).
XX
SQ   Sequence 2873 BP; 957 A; 478 C; 550 G; 888 T; 0 other;
     caagcttgtc caacccgcgg cccgcgggcc gcatgcggcc caggacggct ttgaatgcgg        60
     cccaacacaa attcgtaaac tttcttaaaa cattatgaga tttttttgcg attttttttg       120
     taattttgta atttgactat gtgattctca agtgtgaact tcgtagacaa caatggaatg       180
     gaaaggggta atcagagtat gtcacatcca caaataatgg actagtatcc ataatttgca       240
     ttataattgc aaacagttca gcaagaagaa attaaaagcc attaaaatta actaacaaag       300
     agcgagagga cgctattgca gtgccacgtg aagtgaattg tgacaaagaa ttcaagtgtg       360
     tattctggac aaggcagagc gctgctgtac accagacact gtcgccattt gtacgcatgt       420
     gtggcttcag ttttatggtg gtgtgcgact tccagtgtgt tatcttctaa tcacggacag       480
     ttgaattgac accttcaggc gttatatgtg cttctggcga cttgagcaat gatatttgat       540
     aatatttcaa cctacctttg taaatgatag gtgtttaata ttagttagaa gacctataag       600
     tattagtctt cttatttggt tattaaacct tgctttctat tttcctgtct attaattttc       660
     ataataaatg taaatcgagt tgcttatcta ttattatttt ttaaaattcc agcatatggc       720
     ttctacaatg tctcaaaaga aaacaaaccc cccccaaaat aaaaaataca gatgagggaa       780
     gattgctcaa cgaaaagtgg acagatgact acttttttgt caaggcaaat agtaaggcac       840
     tctgcttgat ttgtagggaa tttgtgccag tttcaaagac tataatttga aaaggcatta       900
     tatgcaaaga cgtgctgcca aatttggtgc gtatcaagga atgtgtcgta aggacaaaaa       960
     tagcagaact gaaaaaatgt ctgtcttcac aaaaaaaatt ttttttaaag ttgcaactca      1020
     aacagtctat tgtaaaagct agttatatga tagcaaattt aatagcaaaa agcaaaacta      1080
     tttacagatg gtgagtttat taagcaacgt atgggaggca tggcatatat catttgccct      1140
     gataaaaaag aagatatctc taaaatcagt ttgtcttgcc ggaatatagc caggtgaatt      1200
     ggagaaattg gaaagtctat gaaaagagcg taaaactgct aattttaaat tttgtgcttt      1260
     ggcgatggat gaaagcactg atgctacaca tatggcacaa cttgccattt ttattagagg      1320
     cattgatgac gaatagaatg tcatcattat ataaagccat ataatgaaga aataataaac      1380
     ccatataatg aagaaatggc ttttttagtg ccattaaaaa acagagtaaa tcaagagatt      1440
     tatacgaagt agtaaaagat gcattaaagc aattttcttt gtgcgttgtg aacatacctg      1500
     gtatagttac tgatgatgcc cctgcgatgg tacgtaaaag agagggagtt gtaaaattaa      1560
     tagaaaatga tgcagttgcc gcctgaaact cacttttgat gatgtgtcat tgtatagtac      1620
     atcaagaaaa tttatgcaca aaagctttaa aaatggataa catcatgcaa attgtcatca      1680
     aggctgtgaa tttcataggg gccaagagat tgaatcattg ccaattccag gaattcctta      1740
     aaagtatgga tgctgactat agcaacatca tttacttttc ggaagtaaag tcgagacaga      1800
     tgttgaaaag attttatgat ttgcgacatg aaatcgagtt atttatggta tcaaaaacaa      1860
     aatttgtgcc agaacttgat gacgaaaact ggcttacaga tttagcattt ttagtggatt      1920
     tgaccactca tttaaatgag ttaaacatga atcttcaagg tgaaaaccaa cttctcaata      1980
     caatgtttca aaccataaca gtgttccaaa tacaattgaa attatggcaa gctaaaatta      2040
     aggcaaacag ttttacggat ttcaacacat ttgctaaaca cgggcttgtc aacagcaaaa      2100
     agtattctgc cttgcttttt gatttgataa aggaatttga aaacaggttt taagatttct      2160
     ggaaaaataa tcaatatttt ggtatagttg caactccatt ttcagccaac ataaatatgt      2220
     tacctgcgaa tgcatacagc tgcaatgtga cattcaactt aaagaaaaat ctcatcaggc      2280
     ttctttcctg gactttgtaa gacctatctt cccagagaca aatatccctc gcttcacagt      2340
     catgccttac tcatgtcgtc ggtttttggc agcacctgcg tttgtgagca actgttttca      2400
     aggatgaagc acacgaagag taaaattaga accaaaatat ctgaggagca ccttgagaac      2460
     tcgctgagaa ttgcaactac ttccatcgaa ccagatattg atgcattagt ttctcaaaaa      2520
     caatgtcaaa tatcccacta gttttatgtt gtcctctttt acttttataa taaaaattat      2580
     caaaaaatta atgacgtttt attacttaga tacgtacatt ttctatgtca gtgattgcaa      2640
     agttgggacc tgcttgacga ttttaaaaga ccctctgaaa ggggcagcac atggttagat      2700
     tatgatgcga ggactttttt gcttatctgt ggtggtggat atcacgaaaa ttatgcacag      2760
     accttttttt tttagctcat cagctatcgt tagtgttagt gtattttatg tgtggcccaa      2820
     gacaattctt cttccaatgt ggcccaggga agccaaaaga ttggacaccc gtg             2873
//
ID   BSRb        repbase; DNA   ; PRI   ; 152 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Satellite from primates.
XX
KW   Satellite; Simple Repeat.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-152
RA   Smit A.F.;
RT   "BSRb - Satellite from primates..";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 152 BP; 40 A; 28 C; 44 G; 40 T; 0 other;
     gctgggttca gcaatatgtc acaatttctt ctgtggggca ggttcaggca gaagagaaga        60
     gtcacattac ctaggtgctg ggttcagcaa tatgtcacaa tttcttctgt ggggcaggtt       120
     caggcagaag agaagagtca cattacctag gt                                     152
//
ID   Tigger4a    repbase; DNA   ; PRI   ; 236 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Mariner DNA transposon from primates.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Tigger4a; ZOMBI_A.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-236
RA   Smit A.F.;
RT   "Tigger4a - Mariner DNA transposon from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   (MER46A)  14% div.
XX
SQ   Sequence 236 BP; 78 A; 55 C; 47 G; 56 T; 0 other;
     caggttgagc atccctaatc cgaaaatccg aaatccgaaa tgctccaaaa tccgaaactt        60
     tttgagcgcc gacatgacgc tcaaaggaaa tgctcattgg agcatttcgg atttcggatt       120
     ttcggattag ggatgctcaa ccggtaagta taatgcaaat attccaaaat ccgaaaaaat       180
     ccgaaatccg aaacacttct ggtcccaagc atttcggata agggatactc aacctg           236
//
ID   BSRa        repbase; DNA   ; PRI   ; 142 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Satellite from primates.
XX
KW   Satellite; Simple Repeat; BSRa; BSRb.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-142
RA   Smit A.F.;
RT   "BSRa - Satellite from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 142 BP; 30 A; 44 C; 46 G; 22 T; 0 other;
     gctgggccca gcgatatgtc acaatgcccc ctgtgggcag ggcccaggca gaagagtcac        60
     atcacctggg tgctgggccc agcgatatgt cacaatgccc cctgtgggca gggcccaggc       120
     agaagagtca catcacctgg gt                                                142
//
ID   BSRd        repbase; DNA   ; PRI   ; 152 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Satellite from primates.
XX
KW   Satellite; Simple Repeat.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-152
RA   Smit A.F.;
RT   "BSRd - Satellite from primates..";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 152 BP; 30 A; 38 C; 46 G; 36 T; 2 other;
     gctgggtccg catatgagag tcacaatctc acctgtgggc tgggtccagg tatgagagtc        60
     acmatctcac ctgtgggctg ggtccgcata tgagagtcac aatctcacct gtgggctggg       120
     tccaggtatg agagtcacma tctcacctgt gg                                     152
//
ID   ALRa        repbase; DNA   ; PRI   ; 172 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   SAT Satellite from primates.
XX
KW   SAT; Satellite; Simple Repeat; ALR2; ALRa.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-172
RA   Smit A.F.;
RT   "ALRa - SAT Satellite from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 172 BP; 53 A; 29 C; 39 G; 51 T; 0 other;
     ctatctgaga aactgctttg tgatgtgtgc attcatctca cagagttaaa cctttctttt        60
     gattcagcag tttggaaaca ctgtttttgt agaatctgcg aagggacatt tgggagctca       120
     ttgaggccta tggtgaaaaa gcgaatatcc ccagataaaa actagaaaga ag               172
//
ID   SUBTEL2_sat repbase; DNA   ; PRI   ; 87 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   SAT Satellite from primates.
XX
KW   SAT; Satellite; Simple Repeat.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-87
RA   Smit A.F.;
RT   "SUBTEL2_sat - SAT Satellite from primates..";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 87 BP; 0 A; 42 C; 27 G; 12 T; 6 other;
     gcgcctctct gcgcctgcgc cggcgcsscg cgcctctctg cgcctgcgcc ggcgcsscgc        60
     gcctctctgc gcctgcgccg gcgcssc                                            87
//
ID   CERV2_LTR   repbase; DNA   ; PRI   ; 544 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   A DNA sequence of chimpanzee endogenous retrovirus CERV2 - long
DE   terminal repeat.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; CERV2;
KW   CERV2_LTR; Chimpanzee endogenous retrovirus;
KW   Long terminal repeat.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-544
RA   Skaletsky H., Hughes F.J., Page C.D.;
RT   "Original sequence of an endogenous retrovirus CERV2.";
RL   Repbase Reports 4(7), 192-192 (2004).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 544 BP; 150 A; 150 C; 120 G; 124 T; 0 other;
     tgagagaccc cagagaaaaa caccagatgg tcactagaaa aacaccggat ggccactaga        60
     aaaacaccag atggccagga gtcagggtgt gtcaatggct atcaaagaca ccagatgccc       120
     agggtagggc aaggagcccc tctccccccc agtgttccca gaactaaagc aggaaaacat       180
     ttccaggaaa tacctcctgc cacctataag ccccctgacc aaccagcgtg agacagctag       240
     ctcaggccat aattagaacc aaccagttac ttccaaacct cacgccctaa gacttttcaa       300
     atgtgtgacc caatcagctt attgtaacct ccccctgttt gaatttgtaa cctccccctg       360
     tttgaatttg tagtttttgc ctttataagc agtgtgtaac agtcattcgg ggtctcctgg       420
     cctcatacgc tggggaccct agcgcgctag taataaagag tgtctctttg ctgtaatctc       480
     cgtgtcgagt ggtctctggc ggcggcccta tcccgaagta agaatcttga gagaggttct       540
     aaca                                                                    544
//
ID   BSRf        repbase; DNA   ; PRI   ; 379 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Satellite from primates.
XX
KW   Satellite; Simple Repeat.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-379
RA   Smit A.F.;
RT   "BSRf - Satellite from primates..";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 379 BP; 82 A; 98 C; 96 G; 98 T; 5 other;
     tgtgagattc agaacctcam cagtgggctn tgtccatgtg tgagggtgac aatcctaact        60
     gtcggctggg tgtgcatacg agagtcacaa tctcacctgt gtgctgggcc ctgttatgac       120
     actctctgta ccacccgagg gctttataca atatgcgtga gtgtcataat cctctgtgac       180
     ctttntacaa gtaggagacc caggacctta cccgttgccc taagcctagc tatgagagtc       240
     aamatctctc ctattggctg ggtccaggta tgagagtcat catcgtgcct gtgagctggg       300
     tccagatatg wgtcaccatc ccacctgtgg gcagatccac gtatgacagt cacaattcca       360
     actgtggact gcgtccgcg                                                    379
//
ID   SUBTEL_sat  repbase; DNA   ; PRI   ; 174 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Satellite from primates.
XX
KW   Satellite; Simple Repeat; SUBTEL_sat; TAR1.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-174
RA   Smit A.F.;
RT   "SUBTEL_sat - Satellite from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 174 BP; 0 A; 84 C; 54 G; 24 T; 12 other;
     gcgcctctct gcgcctgcgc cggcgcsscg cgcctctctg cgcctgcgcc ggcgcsscgc        60
     gcctctctgc gcctgcgccg gcgcsscgcg cctctctgcg cctgcgccgg cgcsscgcgc       120
     ctctctgcgc ctgcgccggc gcsscgcgcc tctctgcgcc tgcgccggcg cssc             174
//
ID   CERV1_LTR   repbase; DNA   ; PRI   ; 409 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   Long terminal repeat of chimpanzee endogenous retrovirus CERV1 -
DE   a consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; CERV1;
KW   CERV1_LTR; Chimpanzee endogenous retrovirus;
KW   Long terminal repeat.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-409
RA   Skaletsky H., Hughes F.J., Page C.D.;
RT   "Consensus sequence of an endogenous retrovirus CERV1.";
RL   Repbase Reports 4(7), 190-190 (2004).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 409 BP; 122 A; 112 C; 88 G; 87 T; 0 other;
     tgaaaagagc cgggcacatt cctcagcccc gggctcaaaa caaacaagcc cagtacaaac        60
     acatcccatc ctcccatccc accacatatc accatatatc tcttaaactt cccccgggct       120
     caaaacaaac aagcccagta caaacaccac caggaaagtc tccgataagg ggacagatga       180
     ggggacagcc gttcaaagtt ttactgaaag agcgggaacc aaaagaattc ctttgttccc       240
     ctgtaacttt caggctataa aaaagcaaac actcgcattg ttcagggccc tcttgtatgc       300
     ggtggaatgg agggaccagg ttcgaacttg tagtaaagat ccttgccgct tggctttgac       360
     tctggactct ggtggtcttc tttggggaac aaacggtctg ggcataaca                   409
//
ID   AluYc5      repbase; DNA   ; PRI   ; 299 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   17-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   SINE1 SINE from primates.
XX
KW   SINE1; SINE; Non-LTR Retrotransposon; Interspersed Repeat;
KW   AluMacYb2; AluYc5.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-299
RA   Smit A.F.;
RT   "AluYc5 - SINE1 SINE from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 299 BP; 90 A; 77 C; 94 G; 37 T; 1 other;
     rgccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccacggtg aaaccccgtc tctactaaaa atacaaaaaa       120
     ttagccgggc gcagtggcgg gcgcctgtag tcccagctac tcgggaggct gaggcaggag       180
     aatggcgtga acccggaagg cggagcttgc agtgagcgga gatcgcgcca cagcactccc       240
     gcctgggcga cagagcgaga ctccgtctca aaaaaaaaaa aaaaaaaaaa aaaaaaaaa        299
//
ID   ALRY-MINOR_PT repbase; DNA   ; PRI   ; 171 BP.
XX
AC   .
XX
DT   07-JAN-2005 (Rel. 10, Created)
DT   07-JAN-2005 (Rel. 10, Last updated, Version 1)
XX
DE   Minor repeat unit of chimpanzee alpha repetitive DNA from the Y
DE   chromosome centromere - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; ALRY-MAJOR_PT; ALRY-MINOR_PT;
KW   Repetitive sequence; satellite DNA.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-171
RA   Hughes F.J., Skaletsky H., Page C.D.;
RT   "ALRY-MINOR_PT.";
RL   Repbase Reports 4(12), 310-310 (2004).
XX
CC   [1] (Consensus)
XX
CC   The major repeat unit found in the chimpanzee Y chromosome
CC   centromere
CC   consists of 28 copies of the minor 171 bp unit.
XX
SQ   Sequence 171 BP; 50 A; 29 C; 36 G; 56 T; 0 other;
     cattctgaca aacttctttg tgatgtgtgc attcatctca cagagttgaa cctttctttt        60
     gattgagcag ttttgaaaca ctctttttgt agaatctgca agtggacatt tggagcgctt       120
     tgaggcctat ggtggaaaag gaaatatctt cacataaaaa ctagacagaa g                171
//
ID   RTVL-Ib_I   repbase; DNA   ; PRI   ; 6649 BP.
XX
AC   .
XX
DT   06-SEP-2005 (Rel. 10.08, Created)
DT   06-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Internal portion of ERV1 Endogenous Retrovirus from Pan
DE   troglodytes.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-6649
RA   Smit A.F.;
RT   "RTVL-Ib_I - ERV1 Endogenous Retrovirus from Pan troglodytes.";
RL   Direct Submission to Repbase Update (06-SEP-2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6649 BP; 2120 A; 1482 C; 1374 G; 1673 T; 0 other;
     aaaaatttgg gggcccacct ggattcccat tctcctccga ggaagggtct ctctggtcct        60
     cttccgtgag gagcgcactg cgctgcctcg ttgtggtggc ctcaggggta aggaatcgag       120
     acccacccaa tgtgacaaat aaacctggac tttcagcaac gcaggaagaa acagaccaac       180
     aacttgggga gaaaagatcg tcacatactg caatgaccag gtaactctgg ttacagacca       240
     aggtaagaaa tgttgttaag agcgacaaag tatttccttg gtggttaggg tatcttggag       300
     gttgaaagtg tgtgaatgag atgcaccatt gagtgcaaag tgagtggtga gttcagatct       360
     gcagttctgt ggtcacctca tctggcctag ggtggccctc ctgttaagag tctggattgg       420
     gggtttatac caacccgcca atgctaagag ggatgtaaca ttcccgtgag agaagcagcc       480
     agagaaggat gaagcaaaag gagaagagtg cgagaagcct ccagcagggg gctcgagcct       540
     ctaggaaagg aaggcgagaa atctccagta tgggggattg agcctcatac acacatccag       600
     tagtagggaa ggcaagaaat ttccagtaga ggaaattgag cctcaccctg aaaggtgaga       660
     aatctccagt aggggagatt gagccttacc ccaaaaccat caagatggga aataccccaa       720
     gtaaggtagg ggataaaagg gataaagcta gcaacactaa tattcccctg atagtccatt       780
     aggcctaatg ttaaaatatt agaaggataa tgaaaggacc aaaaacaaga aaaagcagtt       840
     gctgacccag acccttctcc tacccctgtt gtcccctcct tataaccctg cctctttgga       900
     atcatcccaa gagctcactt actaccagcc taagtaccct tccctgaaag gacttcaaca       960
     caagataaag caatgtaaaa agaatattca gaacttccct ttcccctcta cttcggggga      1020
     atcagctcca gctctcttcc cctgaagggg gtgcccccta ggaggagggg gcattggctt      1080
     tgtaaatgct cctttaacca gcttggaggt ctgaaaccaa aaaagagagc ttaagccagt      1140
     attagacgac cctcatggag aagcagatca aattgaccaa tttctgggac ctcagttata      1200
     tacttggggt gagttaatgt ccatcctagg catcctcttc ttgcagggaa aaaagaggca      1260
     tgatccacag agctgctaca atagcctgga atgtgaacac cctcctgcca aaatgttcct      1320
     acagcagatc aaaaaaattt cctgcccaag atccctggtg ggacaataac aacacaaccc      1380
     accaagaaaa tatgcaggac cttaggaaat tgataataaa cgggattaaa gaatcagtac      1440
     cccgagccct gaatcttacc caagcacttg atatacagca agggaaagat gtagggcctt      1500
     taaaattttt aaacagacta aaggaacaaa cgagaaaata tgctgatcta gatcttgagg      1560
     atcctctttg gcagggaatg ttaaaatttc attttgtcac taacagttgg ccagatatta      1620
     acaagaaatt acaaaagata gagaactgga aagatagacc tatagaagag cttctgagag      1680
     aagcccaaaa agcaaatgca agaagagatg aagaaaaaca aaagcagaag gcaaaaattc      1740
     tgctgtctac catacaacaa agtacccagg gggccagaac ctataaagaa cccagacccc      1800
     cactctccag gcaatataaa gggtacaaaa gagtaaagcc agcagactca aaggtagaaa      1860
     aaaaaagagg acagaacaaa tgttttaaac gtggaaaatt aggttacttt aaaagacaat      1920
     gtcccaaatg agaaaagaaa gaaacccagt tatggctttt gaagaagact aaggaagtca      1980
     ggggctctac tttctacttg agtcccacca agagcccttg ataaatttag aagtgggacc      2040
     caatgttgag cttattatct ttttaatcaa ctcaggagta gctcgctcct cagtttgtta      2100
     tcttccatct agtgtaactt gctcacaaga agaacttttt atctcaaagg taaaaggaga      2160
     agggtttaca gcaaaaaaaa aaaaaaaaaa acttagagga gacagaagta aaatacaaaa      2220
     accaatcagc tagtatcaaa tttctgttaa tcccaggaac agggacaaat ctattgagaa      2280
     gagatttaat gctaaaatta agcttaggcc tccaaatcaa tcatggaaaa ttcctcccct      2340
     ccctaaactt gttcaccacc acagacaaag aacacattca tcctcgggta tggtcaaaag      2400
     acgggaatcg aggaaagtta cagattcctc ccattcatgt taaattataa acccttaggg      2460
     aagttgtaaa gagaaagcaa taccgtattt attcctttaa aagccagggt aaatttaaaa      2520
     cctgtaattg ataatttaag gtcttctccg tgatgggctt cttgagcctt gtatgtctcc      2580
     ctataacact ccaatactgc ctgtaaagag gccagacatg tcatactgct tagtgcaaaa      2640
     tcttagagct attaatgaga tagtccaaac caaccactct gttgttacta gtaactgccc      2700
     ctgtcctagc tttacgctcc ctagaactgc cctttcatct ctccaccaat gtaaacaaag      2760
     gagtagcctt aagagtactc actcagaaac acgggggcca tcggcgccca tagccttttg      2820
     gtcaaaaatt cttggccctg taatccgagg gtagcagcaa cagccctact aacagaagaa      2880
     ggcaggaagg ttaattttta gaagggactt cgttgtcagt acacctcatc catttaggac      2940
     tacccttaat caggaggcag gaagggggct tactgactca agaattttaa agtatgaagc      3000
     tatcccatta gaaagagatg atttaacact aaccactgaa aattcactta gcccagcagg      3060
     tttcctgcct ggggacccaa atttaaagag acttgagcat gagtgtttag atttaattga      3120
     ttatcatgct aaagtcaggc ccaatttaag agagacctct ttcaaaacgg ggcagcactt      3180
     atttatagat ggctcttcct gggtaattga aggaaaaaga cataatgggt actcagtggt      3240
     cgatggggaa gcccttgcag aagtagagtc aggaagacta cccaataatc ggtctgccca      3300
     aacatgtgag ttgtttggat taaatcaagc cttagagcac ttgcaaaacc aagaagggac      3360
     tatctatact gattccaagt acgcctttgg aatagctcac atctttggaa aaatttggac      3420
     tgaatgaggt cttattagta gcaagggtca agacctgatc cataaagaat taatcaccca      3480
     agtattagag aacctccaac tgccagaaga aatagttgtt gtctgtgtcc caggacatca      3540
     gacaagtatc tcttctgaaa gcgcgccatg ggaataatcc tgcagatcat atagccaaac      3600
     aagccgccgt ttcctctgaa atgcctgttt ttcacttaac ttcttgcctt tcccccctga      3660
     tcgcagtccc catcctttcc tccaccgaaa aggaaaaatt aggggtcaag gaaaatccag      3720
     aagggaaata ggtgttacca gaccaaagag aaatgttacc caaacccctc atgggagata      3780
     ttccctctca tccgcacaag ggattcattg ggggcctcaa gccatgtgtg atgcagttct      3840
     tagggtttat ggatgtatag gaatttatac tttggcaaga caggttacag atagttgcct      3900
     agtatgtaaa aagactaata aacagaccct cagaaaacca cctcttggga gaagaaatcc      3960
     aggattaagg ccattccaaa gtatccaagc tgattacacc aagatgcccc aattggtcat      4020
     ctaaagtatt tattagcagt agtagatcac cttactcatt aggtactcat ttcactgcac      4080
     atgtccttaa gaaattagcc caactactgg atataacatg ggagtatcat actccttggc      4140
     acccaccttc accagaaaga gtggaaaaga atgaacgaaa ctctaaaaag tcacctaacc      4200
     aaattagtct tagagacttg gttgccttcc cattgccctg ttaagaatcc aaactgcttc      4260
     ttagagagat gttggcttat ccccttatga aatgttgtat aggttgccct atttgcactc      4320
     cactgctgac attcccacgt tcgaaacaaa agatcagttt ctcggaaact atatacttgg      4380
     tttatcttcc actttctctt ccctcagaac taaaagtctt ttagcacagg caccacccct      4440
     agagtttcca gtacagcaat atcaggctgg ggaccacgtc ctagtcaaaa gttggagaga      4500
     aggaaaaccc gaactggctt gggaaggacc ctacctagtg cttctaacca ccaagaccgc      4560
     agttcgaaaa gcagaaagag gatggactca tcacacccgg gtcaaaagag caccaccctc      4620
     tccagaatca tggacagcta ttccagggcc aaccccaaac aagttaaagc taaaacgggt      4680
     ttgatcctct tatattgcat ctctttcttt tccctttcta ttgctaatcc tctcgttatt      4740
     aatgtgacta ggttgagttt accccaaact attacttttg atgcttgcct tgtgatgccc      4800
     tgtggagatt tgccaaacca gaggcaactc tccacttcag aaaagtatct ttgtctttcc      4860
     tggctctcct cagactggaa atctgttaac tgagatgagt tagtctagga agattttgat      4920
     gatgatccca gtatgaactg ggaatcttgc cctcctagaa tagaattttt atgctgtagc      4980
     tggtctaatg tcttatggac tatcaaggaa caaggatgga ccaccccaac cagtggttgc      5040
     agtttcctga aaccatatat tcattttact aaaggaatta cccccatcaa ctgtcagcta      5100
     aaccaatgta atccagtaca aattaccatc tcagcttccc aaaattcctc cttcattaaa      5160
     tcgtttttat ggcacaagag cagaagtctc aggaacagac cctataggat tctttgaaat      5220
     gtgctgtatt gctcccctac ccccttcacg tccttctaat acatcttcca atcaaaccgt      5280
     tactcttcct ctacccaatg ataaaactaa ggtagccatt gtagaagtta aaagatttaa      5340
     agcagaccat agcaattgag acagggtacc gagatgcgaa tgcttgggtg aaatggatta      5400
     aatattccat ctgcactcta aacaaaagtg actgttacac ttgtatgcac ggtgccacag      5460
     gcccaggctg tccccttttt actcagatgg tcttccagct gacctggcat gagctgtatg      5520
     gtagctcttt tccaagacct cacagtctga ggtaatgaat tcgccaagct ctctctctct      5580
     ctgctattcc ctgaagtcca acaccctgca ggtcaggccc ctggggggca tccagcctcc      5640
     gtatcctggc accaattttt cctcatgtct ctcatgacaa ggggaaaaat tggcgtatct      5700
     tggaaactaa aggggtgcag tcagcttaag cccttccaag agcttaccag tcagtctgcc      5760
     cttgttcacc cttgaacaaa tgtatggtgg tactgcggtg gacccttact aggcactctg      5820
     ccaagtaact ggagcagcac ttgtgctcta gtccagctgg ccatcccttt tacctgagca      5880
     ttccatcagc atggtagaaa agaaaattgt aaagaaggag tggcttacgt gggtcctttg      5940
     accctcatgt ttatacaggc gctattagag ttccaagagg ggcaccagat gaatttaaca      6000
     cccaaaatca aatagctgta ggatttgaat ctgtgctgtt ttagtggtga agtataaaca      6060
     aaaatgtaga ttggataaat tatatttact ataatcaaca aaagtttgtt aactacacaa      6120
     gagatgccat taaaggaaca gctgaacaat tagaccccgc cagccagatg gtttagaaaa      6180
     atagaatagc tcttaacaca atgttagcag agaaaggcgg ggtctgtgtc atgattagag      6240
     tccaatgttg tatttttatc cctaataaca cagtccccga cagaacagtt aacaaaagct      6300
     ttgcaaggcc taaccttatc cagtaagtta gcaagaattc tagaataaat gaccccttta      6360
     ccagttggat agagagatgg tttagaaaat ggaggggact aatgtcctca atatttactt      6420
     ctcttgcaac tgttataagc gtgctgattc ttgttagatg ctttatcgta ccatgcattc      6480
     gtgaactggt acaaagactc atagaaacag cactcaccaa aacctctctt agccctcctc      6540
     caccttactc agataagctt ttccttttag aaaaccaatc aaaacagcaa agccaagata      6600
     tgatggaaag gtttgaagag gaaaatttgt aaaatcaaga gggggaaat                  6649
//
ID   LTR5A_LTR   repbase; DNA   ; PRI   ; 1033 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV2 Endogenous Retrovirus from primates.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon; LTR5A_LTR; LTR5B; HERVK.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-1033
RA   Smit A.F.;
RT   "LTR5A_LTR - ERV2 Endogenous Retrovirus from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   HERVK LTR  5-10%.
XX
SQ   Sequence 1033 BP; 257 A; 242 C; 243 G; 280 T; 11 other;
     tgtagggaaa agaaagagag atcagactgt cactgtgtct atgtagaaag ggaagacata        60
     agagactcca ttttgaaaaa gatctgtact cngaacaatt gctttgcctg agatgctgtt       120
     catttgtagc tttgccccag ccactttgcc ccaaccactt tgacccaact tggagctcac       180
     agaaacatgt gttgtataaa atcaaggttt aagggatcta gggctgtgca ggatgtgcct       240
     tgttaacaaa atgtttacag gcagtatgct tggtaaaagt catcgccatt ctccagtctc       300
     aatnaaccag gggcacaatg cactgtggaa agccgcaggg acctctgccc tngaaagcag       360
     ggtattgtcc aaggtttctc cccatgtgat agtctgaaat atggcctcgt gggatgagaa       420
     agacctgacc gtcccccagc ccgacacccg taaagggtct gtgctgaggn ggattagtaa       480
     aagaggaaag cctcttgcag ttgagatgag aggaaggcca ctgtctcctg cctgcccctg       540
     ggaactsaaw gtctcggtgt aaaacccgat tgtacatttg ttcaagtctg agataggaga       600
     aaagctgccc tgtggcggga ggcgagacat gttngcagca atgctgcctt gttattcttt       660
     actccactga gatgtttggg tggagagaaa cataaatctg gcctacgtgc acgtccaggc       720
     atagtacctt cccttgaact tanttatgat atagattctt ttgctcacat gttttcttgt       780
     tgaccttctc cttattatca ccctgctctc ctantacatt cctttttgct gaaataatga       840
     aaatcgtaat caataaaaac tgagggaact cagaggccgg tgccngtgca ngtcctcggt       900
     gtgctgagcg ccggtcccct ggacccactg ttgtttctct atactttgtc tctgtgtctt       960
     atttcttttc tccgtctctc atcccacccg actagaaata cccacaggtg tggaggggca      1020
     ggccacccct tca                                                         1033
//
ID   CERV2_INT   repbase; DNA   ; PRI   ; 7584 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   A DNA sequence of chimpanzee endogenous retrovirus CERV2 -
DE   internal portion.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; CERV2;
KW   CERV2_INT; Chimpanzee endogenous retrovirus.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-7584
RA   Skaletsky H., Hughes F.J., Page C.D.;
RT   "Original sequence of an endogenous retrovirus CERV2.";
RL   Repbase Reports 4(7), 191-191 (2004).
XX
CC   [1] (Consensus)
XX
CC   Internal sequence of an endogenous retrovirus with ORFs
CC   for gag (1671-2153), pol (2370-4154) and env (5670-6233).
CC   CERV2 is absent from the human genome. It is similar to
CC   Baboon endogenous retrovirus strain.
XX
SQ   Sequence 7584 BP; 1971 A; 2229 C; 1774 G; 1610 T; 0 other;
     tttgggggct cgtccgggat tgctcgccgc ctgacgaccc ccgacccgca cggcgaagac        60
     acactcggcc cgggccatcg actgactgac gaccaggtgc cctcaggtac tttcgttttg       120
     ttttgttcgt ctatttgtgt tgccagctaa atcagaagag tactcaatct gtataagtgt       180
     ggaagggggg cagacgtgct cggcaccttc ccacttacgc cccgggggac gccctggcgg       240
     ttgtctggag gaaaattgac gattccgtca atctcttcac ctctgaaggc aggttctccc       300
     tgccatctga atccttcgtg gaaccgaagc accgccctgg cggttgtctg gaggaaaact       360
     gacgattccg tcagtctcct cacctctgaa ggcaggttct ccctgccatc tgaatctttt       420
     gtagaactgt ggcgccgatc tcttgccgcg cggcttctct gtgtgtgtgc agtctctgtt       480
     tttactattg tcttgtttgc ctgtgcgttg gaatctgtag acacgactat aggacagaca       540
     ctgacgactc ctctatcatt gaccctgact cacttccctg acatacgagc gcgagcccac       600
     aatctctctg tggaaattcg caaagggcga tggcaagcct tctgctcttc tgaatggccc       660
     accctcggcg ttgggtggcc ccaaggcggg acctttgacc tctccattat cttacaggtt       720
     aagacaaaag taatagatcc agggccacgc ggccatcctg accaggtggc ctatatcatc       780
     aactaggaag acctggttcg ggatcccccc ccttaggtga agcccttcct gccctcggct       840
     tccccttccc agtcgaccct cctcgccttg gaggcccccc gagaccagac cccggtcccc       900
     ctgaaacctg tcctcccgga tgagagtcag aaggacctcc tcctcctaga ctccctccct       960
     cctccgcctc acaatcccct cctttacccc cctccttacg ccacgccctc accccctgcg      1020
     ttgtctcctg ccccttcttc caccccctcg gctcctactc tttctccaac ctcttcttcc      1080
     accccctctc agatcccatc cccctctccg gccccacccg aactcgcccc tcagacccgc      1140
     ctcagacacc tcgcctccgc ttacggcggg ccgaggaccc tggcgaccag tccgcctggc      1200
     agtcctccct ttttcccctc cgcaccgtga accgcacggt ccagtattgg cccttctcgg      1260
     cctcagatct ctacaattgg aagacccata accccccctt ctcccaagac ccgcaggccc      1320
     tgacctctct gatagagtct attctcctca ctcaccaacc cacctgggat gactgccaac      1380
     agctcttaca ggttcttctg accacagaag agaggcaacg ggtcctcctc gaggctcgga      1440
     aaaatgtgcc agggccagga ggattcccga cccagctccc caacgagata gatgagggat      1500
     ttcccctcac ccgcccggat taggactatg aaacagcaac aggtagggag agtctccgaa      1560
     tctatcgcca ggctctgttg gcaggtctca aaggggctgg aaagcgcccc accaatttgg      1620
     ctaaggtaag aactattact cagggaaaga acgaaagccc agcagccttc atggaaaggc      1680
     tcctagaggg gtttcgaatg tacactccgt tcaatcccga ggccccagag cacaaggcca      1740
     ccgtggcaat gtcattcata gaccaagcgg cgctagacat aaagggaaag ctccaaagat      1800
     tggacgggat ccagacctat gggctgcagg aactagtgag ggaagcagaa aaggtttata      1860
     acaaaagaga gactactgaa gaaaaagaag ctaggctagc aaaggaacag gaggagcggg      1920
     aagatcgacg agatcgtaag agagacaggc atttgactaa aatcctggca gcagtagtga      1980
     cagggaaagg gccagggcca gggagagagg ggggagaacg aaggcgcccg aaggtggata      2040
     aagaccaatg tgcctattgc aaggaacgag gacattgggt caaggaatgt cctaaacgtc      2100
     ctaaggaccg gaagaagccc actcctgtcc tgaccctggg agaggacagt gattaggggc      2160
     gtcagggctc cgaagccccc cccgagcccc ggctaaccct ttctataggg gggcgcccca      2220
     ccacctttct agtggacacc agggcccagc attcagttct gacaaaagca gacgggcctc      2280
     tttcatcccg cacctcttgg gtccaaggag caacaggagg aaagctgcac aagtggacga      2340
     cccaccgaac agtaaacctt ggaaaaggta tggtgactca ttctttctta gtagtacctg      2400
     aatgcccata tccccttctg gggcaggatc tgttgaccaa gctcggagcc cagatacatt      2460
     tctcagagag aggggcccag gtactgggtg aggatggtca gcctatccaa attctgaccg      2520
     tttccttgca agatgagtac cggctttttg agactcccaa cttcaccagc cctcccgata      2580
     attggctgca agaatttccc caggcttggg cagagacagg gggacttgga ctggcaaaat      2640
     ttcaagcccc gattatagtt gacctcaaac ccaccgcagt gcccgtgtcc attaagcaat      2700
     accccatgag ccgagaagcc cgtatgggca tccaacagca tgttaacaaa tttctggaat      2760
     taggagtctt acggccatgc cgctcacctt ggaatacgcc actccttccg gtaaagaaac      2820
     ctggtaccca agattatagg cccgtccagg acttaagaga aattaataag agaaccatgg      2880
     acatacatcc tacagtccct aacccttaca acctgctcag taccttgaga ccagaccaca      2940
     actggtatac agtactagac ctaacagatg cattcttttg cttacccctg gctccccaaa      3000
     gccaagagct ttttgccttt gaatggaagg acactgagag gggaatctca ggccaattac      3060
     cttggactcg gcttccccaa gggttcaaga actctcctac cctctttgac gaggctcttc      3120
     accgggactt ggctgatttt cacaccccgc acccagattt aactctgctc cagtatgtag      3180
     atgacctcct cctggcagcc cccactaaag aagcctgcct acagggcacc aggcaactgc      3240
     tccaggagct cggagaaaaa ggataccaag catctgccaa gaaagcacaa atctgccagg      3300
     ctaaggtaac ctacctagga tacatcttga gtgaagtaaa aaggtggctc acccctgggc      3360
     ggatagagac tatagcccgc attccgccac cccggagccc caaggaggtg cgtgagtttc      3420
     tgaggactgc cgggttctgc cgtctgtggc tacccggttt tgctgagtta gcggccccca      3480
     tttatgccct caccaaaggg agcaacccct ttacctggct ggaagaacac caacaggcct      3540
     tcgaaacttt aaagaaggca ctcctctctg cccccgccct cgggctacct gacacatcca      3600
     agccttttac cctctatgta gacaagagac gggggatagc caaaggggtt ttaacccaaa      3660
     aactggggcc ctggaaaaga ccagtagcct acttatctaa gaaactggac cctgtggcgg      3720
     ctgggtggcc cccttgcctc cacattatgg cagccaccgc tatgctagtc aaagactctg      3780
     ctaagttaac ccttgggcaa ccattgactg tcattacccc gcatgccttg gaggccatag      3840
     tgcagcagcc cccggaccgt tgggtcacca atgctcgtct aacccactac caagccctcc      3900
     tactagacac ggaccgcgtc cgctttggcc ctccggtcac tctgaatcct gccaccttgc      3960
     tacccgtacc ggaagtcccg ctgagccccc acgactgtcg acaagtgctg gcggagaccc      4020
     acgggactcg agaagacctc caggaccaca aactcccaga cgcagaccat acttggtaca      4080
     cagacggtag cagcttcatg gacgcaggta cccggagggc gggggcggcg gtagtggatg      4140
     gatatgccac gatataggca caggcactgc ctcccggaac gtctgctcag aaggctgaac      4200
     taactgctct aacaaaggcc ttggagctat cgcaggggaa aaaggctaac atctacacag      4260
     acagtcggta tgcctttgca acagcccaca cccatgggag catttacaag aggcgagggc      4320
     tcctaacatc agaaggaaaa tcaaaaataa ggctgaaata atcgccttat tgaaggccct      4380
     cttcctccct aaaaaggtgg ccataattca ttgtcctgga catcaaaaag gacctgatcc      4440
     cgtcgcccaa ggtaacaggc aagctgacca cgcggccaag caggctgcta gaatagagac      4500
     attgacctta gtttcggaaa ccagagaggc tgaccggata tcccctccca caagttatat      4560
     ctatacacca gaggaccagg aagaggcagt agccttagga gccatagaaa accaagagac      4620
     taaaaattag gaaaaagacg ggaaaacagt tctcccacga aaagaggcca cggccatggt      4680
     gcagcagatg cacgcctgga cacatctaag tagtagaaaa ctaaaacttc tcattgaaaa      4740
     gactgacttc ctaatcccca gggtcggcac cctcctggaa caagtaacgc tcgcttgcaa      4800
     ggcctgccaa cgagtaaagg ccggggccac gcgagtcccg gcggggataa ggacacgggg      4860
     caaccgccct gggacctatt aggaagtaga ttttactgaa agtctcacca tgcgggatat      4920
     aaatatttat tagtatttgt agacaccttt tcaggatagg tagaagccta ccccacccag      4980
     caagaaacgg cccacatagt ggccaagaag atattggaag aaattttccc caggttcgga      5040
     ctccccaagg taattaggtc agacaatagg ccagccttcg tctcccaggt aagtcaagga      5100
     cttgccaaaa tactggggat taattggaaa cttcattgtg cttataggcc ccagagttca      5160
     ggacaggtag aacggataaa cagaactatt aaagagacct gaacaaaatt gaccttagag      5220
     actggcttaa aagattggag acgtctccta tccctagctc tcttgagggc ccgaaataca      5280
     cctaatcgct ttaggctcac cccttatgaa atcctctacg ggggaccacc tcccttgtca      5340
     accttgcttg attctttctc cccctctgac cctaagactg acttgcaggc tcggctaaaa      5400
     ggactacagg cggtgcaagc ccaaatttag gctcctttgg cggaactgta ccagcctgga      5460
     cacccacaaa ccagtcatcc tttccaagtg ggagactccg tctatgtcag acgacatcgc      5520
     tcccaaggat tagaaccccg gtggaaagga ccatgcatcg ttctcctcac cacacccact      5580
     gccgtgaaag ttgacggggt cgccgcctgg atccacacat cccacgtgaa agctgctccg      5640
     aaggcgccag aatcagcatc gcctgagaaa tggagacttc gtcgctccag ggaccccctc      5700
     aagataagac tctcccgtgt ctaacccccc acctactgtt agcccttttc cttccctggg      5760
     ttatcggaag cagcaacccc catcaaccct atcgattgac ttggcaaata actaattttg      5820
     aaacccatga agtcctcaac gagacttcac atatagcccc tttaaacacc tggttccccg      5880
     acctctactt taatcttgac aaaatagcca tgataaatga aatggaaggt ggtgagtgga      5940
     gaaagcaagc gagaaaggtc tcccttagtc gaaacgggtt ttatgtttgc cctggatttc      6000
     ggacaggacc gatgaaaaag acctgtggtg aaataatgtc cctatactgt gcaagttggt      6060
     catgtgtaac aactaatgat ggagaatgga aatggaaaac ccaactctgg tatgtgacca      6120
     tgtcctatgt ccagccatgc actaggacac ggtattcggc cacctgtaac ttaatctgtg      6180
     tcaaatttga ggaggccgca aaaactgacc cccgttggac aaccggacta atttgaggcc      6240
     taaatttata ccaatctccg gcatttggac tccctatcca aattaggcta ctagtcaacc      6300
     cggtctcagc ctcggtccca gtaaggccaa acccggttct aacagggagg gcaccttctc      6360
     agtcagagag ccggcaaaaa gtcccaacca ccgtttcccc atctcctccg ccatccgaat      6420
     ccccattggc actcccaagg gccccctcgg tgctcccggg gaccacccgc ctgcctcccg      6480
     acctggaagc aaccagtaga ctcttcaacc tcatcagagg cgcttacctc gccctgaacc      6540
     agacaaggcc taaatccacc acctcctgct ggctctgcct ggccacaggc cccccttact      6600
     atgaaggtat tgcctctgtt agtaatttta ctaattccac tagtcatttt ggatgtgcat      6660
     ggcaccagca caagaaactt accctagcag aagtgtcagg gtcgggaacc tgtataggcc      6720
     aggtgccccc cagtcaccaa catctctgta ataaaaccct ggcagtaccc agaactagcc      6780
     actatctaat accctccggg ccagactggt aggcttgcaa aaccggactt acccgttgtg      6840
     tatccacagc tgtcttcaac gacagtgagg attactgtat attagtacaa gttgtgcccc      6900
     aagtttatta ccaaactgga gagtctttta aatcccagtt tgagcaaaaa tacctcacta      6960
     gaatgaagag agaacctgtt tccctcaccc tcgctgttat gctaagatga ggagtagcgg      7020
     ctgaggtcag gacaggaacc gcggcattag tgcgtggcag ctaccaccta caacaactca      7080
     gggcagccgt agatgaagac ctcagggcca tagaacactc cattaccaaa cttgaagaat      7140
     ctctaacctc cctgtccgaa gtagtactcc aaaatcgacg gggactagat ataatttttc      7200
     taaaagaggg cgggctctgt gctgccctta aagagcagtg ttgcttttac gctgatcatt      7260
     ccggagtagt taaagactct atggccaaac ttagaaaaag actagatgat agacagaaag      7320
     aaagagaatc ccaacaaaac tggtttgaaa cttggtacaa ccaatccccc tggtttagta      7380
     ctctcatctc cactatccta gggcccctga ttctgtttat gcttatttta actttcaggc      7440
     cctgcatttt taaccgcttg cttgctctaa ttaaagacag attaaatata gtgcatgcta      7500
     tggtcctgac tcagcggtac caggcagtca agactaacga agagactcaa gattgagcct      7560
     ctaagtcaca aaaagaggag ggaa                                             7584
//
ID   ALRb        repbase; DNA   ; PRI   ; 171 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   14-NOV-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   SAT Satellite from primates.
XX
KW   SAT; Satellite; Simple Repeat; ALRY-MAJOR_PT; ALRb; ALRa.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-171
RA   Smit A.F.;
RT   "ALRb_ - SAT Satellite from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   75% identical to ALRa.
XX
SQ   Sequence 171 BP; 54 A; 27 C; 33 G; 54 T; 3 other;
     ttgtggaatt tgcaagtgga gatttcaagc gctttgaggc caawnktaga aaaggaaata        60
     tcttcgtata aaaactagac agaataattc tcagtaactt ctttgtgttg tgtgtattca       120
     actcacagag ttgaaccttc ctttagacag agcagatttg aaacactctt t                171
//
ID   ALRY-MAJOR_PT repbase; DNA   ; PRI   ; 4896 BP.
XX
AC   .
XX
DT   07-JAN-2005 (Rel. 10, Created)
DT   07-JAN-2005 (Rel. 10, Last updated, Version 1)
XX
DE   Major repeat unit of chimpanzee alpha repetitive DNA from the Y
DE   chromosome centromere - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; ALRY-MAJOR_PT; ALRY-MINOR_PT;
KW   Repetitive sequence; satellite DNA.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-4896
RA   Hughes F.J., Skaletsky H., Page C.D.;
RT   "ALRY-MAJOR_PT.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   The major repeat unit found in the chimpanzee Y chromosome
CC   centromere
CC   consists of 28 copies of the minor 171 bp unit.
XX
SQ   Sequence 4896 BP; 1451 A; 856 C; 1024 G; 1565 T; 0 other;
     gtggaggaaa aggaaatatc tccacctaaa aactagacag aagcattctg gcaaacttct        60
     ttgtgatgtg tgcattcatc tcacagagtt gatccttact tttcattgag cagttttgaa       120
     acactctttt tgtagaatct gcaggtggat atttggaggg ctttgaggcc tctggtggat       180
     aacgaaatat cttcacataa taactagaca gaagaattct cacaaacttc tttgtaatgt       240
     gagcattcgt ctcacagagt tgaactgttc ttttgactga gcagctttga aacagtattt       300
     ttataaaatc tgcaagtgga catttggatc gctttgaggc ctctggtgga aaaggaaata       360
     gcttcacaat aaaactggag agaagcgttc tgacaaactt ctttgtgatg tgtacattca       420
     tctcacagag ttgaaccttg cttttgattg agcagttttg aaacacactt tttgtagaat       480
     ttgaaagtgg acctttggat tgctttgagg cctatggtgg aaaaggaaat atcttcacat       540
     aaagactaga cagaagcatt gtgacaaact cctttgggat gtgtgcattc aactcacaga       600
     gttgaacctt tcttttgact gagcaacttt gaaacactct atctgtagaa tctcccagtg       660
     gatatttgca gtggcttgag gcctctgacg gaaaaggaaa tatcttcaca taacaactag       720
     acagaagcac tctgacaaac tattttgtga tgtgtgcatt cttctcacag agttgaacct       780
     tacttttcat tgaggaattt ttaaatactc tttttgtaga atctgcaaga tgacatttgg       840
     agcgcttcaa ggcctatggt ggataacgaa acgtcttcat gtaataacta ggcagaagca       900
     ttatgagaaa ctccaatgtg atgtgtgctt tcgtatcaca cagagtttca cttttctttt       960
     gattgagcag ctttgaaaca ttctttttgt agaatctgaa agtggatatt tggagctctt      1020
     ggaggcctat ggtggataac gaaatgtctt cgtataataa taactagaga gaagcattct      1080
     gagaagcttc tttgtgacgt gagaattcat ctcacagatt tgaaccttcg tttgattgag      1140
     tagctttgaa gcactctttt tgtagaatct gcaaatggac atttggagcg gtttgaggcc      1200
     tatagtggaa aaggaatcgt cttcacataa aaaggagaca gaagcattct cacaacattc      1260
     tttgtgacat atgcattcat ctcacaaagc tgaaccttac ttttgattga gcagtttgga      1320
     aacccccttt ttctactatc tgcaagtgga cctttggagt gctttgaggc ctatggtgga      1380
     aaaggaaata tcttcactta agaagtagac agaaggattc tgataaattt ctttgtgatg      1440
     tgtgcattca tctcacagag ttgaaccttc ctctggttga acagttttga aacactgttt      1500
     tcgtagaatc tgcaagtgga cattttgagc gcttggaggg ctatggtgtt aaaggaaata      1560
     tcttcccata agaactagac acaagcattc tgacaagctt ctttgtgatg tgtgcattcg      1620
     tctcacagag ttgaaactat cttttgattg agcagctttg aaacactctt tctgtagaat      1680
     ctgcaagtag gcatttggaa ggtttggggc ctgtggtgga aaaggaaata tcttcacaca      1740
     aaaattagac agaagccctc ggacaacctt ctttgtgata tgtgcactta tcacacagag      1800
     tgaaacctta gtgtttattg agcagttttg aaacaccctt tttgaatgat ctgcatgtgg      1860
     acatttggag tgctttgagg tctattgtgg caaaggaaat atcttcacct aagcactaga      1920
     cagaagcatt ctgagaattt tcttgtgata tgtgtattca tctcacagag ttgaacctta      1980
     ctttggattg accagttttg aaacacgaaa aggaaatatc ttcacattaa aactagacag      2040
     aaggattttg acaaactact ttgtgatgtg tacattcatc tcacagagtt gaaccttact      2100
     ttccattgag cagttttgaa accttcctct ggggaatctg caagtggatt tttggagcac      2160
     tttgaggcct ttgctggaaa ggaaatacat tcacaaaaaa cctagacaga agcattctca      2220
     caaactactt tgggatgcat gcattcatct cacggggctg aaccttgctt tacattgagt      2280
     agttttgaaa cactcttttg tagcatctgc aagtggacat ttcgagtgct ctgaggccta      2340
     cggtggataa cgaaatatct tcatatcaca gctagacaga agctatctga gaagctttct      2400
     atgtgatgtg tgcattcatc tcacagagtt gaaccttact tttcattgaa cagttttgaa      2460
     acactctttt ggcagaatct acaagtggac ctttggaacg ctttgaggcc tacggtggaa      2520
     aaggaaatat cttcacataa gaactagaca gaagcatact gacaaatttc tttttcgtgt      2580
     gcgcattcat ctcacagagt tgaaagttaa ttttcattga gcagttatga aacatacttt      2640
     ttgttgaatc tggatgacga catttggagc actttgaggc ctatcacgga aagggaaata      2700
     tcttcatata aaaattagat ggaggcattc tgaaaaacat ctttgtgatg tgtgcattcc      2760
     tctcacagag ttgaaccttt cttttgattg accagcttcg aaatgctctt ttagtagaac      2820
     ctggaagtgg acatttggag ccttttgtgg cctaatgcgg aaaaggaaat atcttcacgt      2880
     aaaaagtaga tagaagcatt ctgacaaatt actttatgct gtgtgcattc atctcacaga      2940
     gttgaacatt tcttttcatt gaccagtttt gaaacactgt tttagtagaa tctggaagtg      3000
     gacatttgga gcaccttgag gcctgtggtg gaaaaggaaa tcccttcaca taaaaactag      3060
     acagaagcat tttgacaaac tcctttggat gtgtgcatgc atctcatggc gtggaatatt      3120
     tctgttgatt gagcagcttt gaaacactct ttttctagaa tcttcaaggg gacatttgga      3180
     gcaatttcag gcctatggtt caataggaaa tatcttcaca taaaaactag acagaagcat      3240
     actgacaaac ttctctgtga tgtgtgcata catctcagag agttgaacat ttcttttgat      3300
     agaccagctt tgaaacactc catttgtaga atgtgggagt ggacatttgg agtgctttga      3360
     ggcttatggt agaaagggaa atatcttcat ataaaaacta gacagaagca ttctgaaaaa      3420
     cttctttgtg atatgtgcat tcatgtcaaa gagttgaact tttcttttga ttgaacagtc      3480
     atgaaactct ctgtagaatc tgcaaacgga cattggttgt gctttgaggc ctatggtgga      3540
     aaagataata tcttcacata aatactagtc agaagcattc tgaaaactgt ctttgtgata      3600
     cgtgcattca tctcacagag ttgaacctca cttttgattg agcagtttga aagacttttt      3660
     ttgtactata ggaaagtgga taattggagt gctttgaggc cgatcatgga aaattaaata      3720
     tcttcacata agaacaagac agaagcattc tgacaaattt ctttgtgata tgtgcattca      3780
     tctcacagag ttgaacctta attttcattg agcagttttg aaacactctt tttgtagaat      3840
     ctgcaagtag tcatttggag cgctttgagg cctttgttgg aaaacgaaat gtcttcatat      3900
     aataactaga cagaagcatt ctgagaaact tatttgtgat atctgcactc atctcacaga      3960
     gttgaatctt tcctttgatg gagcagcttt gaaacactct tttcgtagaa tctgctagtg      4020
     gacctttgca gcgctttgag gcctatggtg gaaaaggcaa tatcttcaca taaaaactag      4080
     acagaagcat tctgacaaac ttctttgtga tgtgtgaatt tacttcatag atttcaactt      4140
     tcttgtgatt gagcagtttt gaaacactct ttttgtggaa tctgcaagtg gacatttgga      4200
     acgctatgaa gcctaaggtg gaaaaggaaa tatcttcaca taaaaattag acggacgcat      4260
     tttgacaaac ttcttcgaga tgtgtgcatt catctcacag agttgaacct ttcttttgat      4320
     taagcaatct tgaaacactc tatttgtaga atctgcaagt ggatatttgt tgtgctttga      4380
     ggcctacggt ggaaaaggaa atatcttcac ataaaaactt gacagaagca ctctgagagc      4440
     cacctttggg atgtgtgcat ttatctctca gacttgaccc ttacttttga ttgagcatct      4500
     ttgaaagacc acttttgtaa taaatgcaag tggacattcg aagtgctttg aggcctacgg      4560
     tggaaaagaa aatatcttca catcagaagg agacagaagc attctgacca atttctttgt      4620
     ggtgtgtgca ttaatctcac agagttaaac cttactttca attgagccat tttgaaacac      4680
     ttttcgtaga atctgcaagt ggacatttga agcgctttga ggcctagggt cgaaaaagaa      4740
     atatattcac ataaaaacta gatggaagcc ttctgacaaa cttctttctg atgtgtgcat      4800
     tcatctcaca gagttgaacc tttcttttga ttgagcagct ttgaaaccct ctttttgtag      4860
     aatttgcatg tgaacatttg aagcgctttg aggcct                                4896
//
ID   MER4D_LTR   repbase; DNA   ; PRI   ; 903 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from primates.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon; MER4D1; MER4D_LTR.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-903
RA   Smit A.F.;
RT   "MER4D_LTR - ERV1 Endogenous Retrovirus from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   mer4 group.
XX
SQ   Sequence 903 BP; 259 A; 238 C; 156 G; 249 T; 1 other;
     tgtaaaccaa aaataaaatt ctaagccccc caaccgactg aatggacccc tcctctcggc        60
     caaggggatc ccaaagaaac ctgaaaaact agttcaggcc atgatgggaa ggggggtcgg       120
     acatgcctcg ttataccctc ctccctttgg agttcaggca caactgacca gcattaacat       180
     taaaacagag atcntaagac tgacaaaaca gactctttgt agcaataaga taccaaattc       240
     caacctgact ctagtatagc atcacatgac agatagcagg ccctgaagga aatcaaagta       300
     ttttacccca aaatatattt ctttgacata ttttgaaatg gccctgcaaa gccgtctctt       360
     gtgggggaaa tctacattct gtagagaatc cccttccctt tccaggtctt ttcctgatcc       420
     aggagagatt taactaagag tctggcacct tttaaggtct gataagagac atttaccatc       480
     tattctctct gaagcctgct acctggaggc ttcatctaca taacaagaac cttggcttcc       540
     acaactcccc ttatcttaac ccaagcattt ctttctgctg acttcaactc tttaggcaaa       600
     gcttaactct ttcaaccaat tgccaatcag aaaatctttg aatccaccta tgacctggaa       660
     gcccccgctt cgagatgtcc cgcctttccg ggccgaacca atgtatacct tacatgtatt       720
     gatttatgtc tttgcctgta acttctgtct ccctaaaatg tataaaacca agctgtaacc       780
     caaccacctt gggcacatgt tctcaggacc tcctgaggct gtgtcacggg ccatggtcac       840
     tcatatttgg ctcagaataa acctcttcaa atattttaca gagtttggct tttttcgtca       900
     aca                                                                     903
//
ID   LTR26B_LTR  repbase; DNA   ; PRI   ; 531 BP.
XX
AC   .
XX
DT   14-NOV-2005 (Rel. 10.11, Created)
DT   09-2005 (Rel. 10.11, Last updated, Version 1)
XX
DE   Long terminal repeat of ERV1 Endogenous Retrovirus from primates.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   LTR retrotransposon; LTR26B_LTR; LTR26E.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-531
RA   Smit A.F.;
RT   "LTR26B_LTR - ERV1 Endogenous Retrovirus from primates..";
RL   Direct Submission to Repbase Update (11-NOV-2005).
XX
CC   [1] (Consensus)
XX
CC   <15% div.
XX
SQ   Sequence 531 BP; 146 A; 148 C; 94 G; 143 T; 0 other;
     tgaagccatc ctcacagggt taacaagaat tctggacaga aatatagtta taattaagca        60
     ttaatcaggc tgcactttga cccacttcct tgtaaccaaa agtcacataa cactagatac       120
     tgaccatttg catccccatt gttcctatag ataggatttc tgacgttaga atcataaggc       180
     ttttgtttaa gaattgctta agcagatcct gaattccagt ggaacagctg acgccaacca       240
     gtttgaagac ccccacagag gaaccgaatc agcatgagaa tacagtttct tcatctccct       300
     gtcccatgac ttcaccctgc actcttcgac caatcaatga tctccacact tcggcccact       360
     ccaaaacctt taaaaaccct agccccaaac tcctcgggga gatggatttg aggtttcctc       420
     ccatctcctc attcggcggc cctacgatta aacctctttc tctgctgcaa cctggtgtct       480
     cggcgtattg acttgccgtg tgcatcgggc aacgaaccta ttacggttac a                531
//
