ID   RETRO19_AG_LTR repbase; DNA   ; ANG   ; 404 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae gypsy-type long terminal repeat from RETRO19_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; GYPSY superfamily;
KW   RETRO19_AG_I; RETRO19_AG_LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-404
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO19_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 4-4 (2002).
XX
CC   [1] (Consensus)
XX
CC   Related to MDG1, TABOR, DM412, STALKER2, and BLOOD
CC   retrotransposons
CC   from Drosophila melanogaster. 4 bp target site duplication.
XX
SQ   Sequence 404 BP; 166 A; 40 C; 88 G; 110 T; 0 other;
     tgtggcgcat acacataggc gtaatgaata taattatagt aagctatata gcagaaatta        60
     tagtaagcta tctttatagg aatagttgtg attggtagaa gcgtgttagt ataggttaga       120
     ataggatagc taatacgaaa agataaggat agaataggta gcataggaaa ttaggcataa       180
     gacggaatta aggatacata ggaagtaaat gaattaagct aggattagat agggaaattt       240
     tagtataaat agcgggatag gatttaggat agtcagataa aagttagact tcataagggg       300
     aaactctgtc caattataga gaaaattata gagagtataa ataaaagtta cagttccaac       360
     aaaacacccc tttttcaatt gtacactaaa agtgatatac caca                        404
//
ID   GYPSY34-I_AG repbase; DNA   ; ANG   ; 4442 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY34-I_AG is an internal portion of retrotransposon GYPSY34_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; AP protease; Gypsy clade; 4-bp TSD gag;
KW   RNase-H; MDG3 lineage; GYPSY34-I_AG; GYPSY34-LTR_AG;
KW   integrase GYPSY34_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4442
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY34_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 60-60 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY34_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the MDG3
CC   lineage of other organisms.
CC   GYPSY29_AG, GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY33_AG,
CC   GYPSY35_AG,
CC   GYPSY36_AG, GYPSY37_AG and GYPSY38_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY34-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies.
CC   The consensus encodes the 1428-aa GYPSY34_AGp gag-pol like
CC   poliprotein
CC   (pos. 119-4402).
CC   The sequence of the LTRs flanking GYPSY34-I_AG is deposited as
CC   GYPSY34-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           119..4402
FT                 /product="GYPSY34_AGp"
FT                 /translation="MLRKKVLRRALIETGVDVPDSATVTQFRQLYASHEPV
FT                 ARSPRAAPPTTSATTPAPACANHQDAAILCLPHYNGDDDFAHHENVANAAA
FT                 SMQNTTDAVSALPSAHGMAAALPRGPDDIEAQFEKLRQQQQLAELRQKVHQ
FT                 LETPQPVALCVKDFEAFIEPLDVDKNPNVIRWFRDLERLFALYRVRDADKF
FT                 FFTLRLLTGTAANVAKELVVTTYDELKKELIDNLHVVATPESVYRQLRNRR
FT                 LRPQESALHYLFDMQRIADQASIADSELIPIVIDGLGSPSITSSLHFMPLT
FT                 MNDFRKKLKLFESCRHLCTTQPPSADARATTNSCMERPRPSQEPIRCFNCS
FT                 RFGHLQNACPRPKRPPGGCFRCFQTGHVYRNCPERRANATVEGNTSSDEAL
FT                 ATNQEVSLTFFHPSAKRTTLPCVRSLLDTGSPVSFISDTIVPVKMLGPLSA
FT                 TEYCTMIKGPLYSRGKIDCTIRFKNHSVRHSFIILPGIAWPVIIGRDLLNS
FT                 LNIFLTYSSPTTSCITKPLSTELKEVDTILPEKLDDAIRSICALDVAEADN
FT                 ELDLGKTLSLEQRSIVNSIVENSYLNYTSDVIPLKHPMKINLTHDTPIFTK
FT                 PRRLSYGERQQVKQIVDKLLAENIIRPSNSPYASALVLVRKKSGEVRMCVD
FT                 YRPLNKITVRDNYPLPLIETCLEHLCGKKFFSLLDLKSGFHQVPMSEESIP
FT                 YTSFVTPDGQFEYLKMPFGLRNAPSEFQRFINSILREFIDDGRIVVYLDDI
FT                 IIASTDLSSHFSTLRSVLEKIKQNNLELRLDKCKFVHEEIEYLGYKANFSG
FT                 IQPSDRHIKALTNYPMPTNLKQLRRCLGLFSYFRRFVPSFSCIAKPMTKLL
FT                 QKDEVFNFDSNCVHAFETLRDKLVHSPILSIFDPKRETELHCDASSFGFGA
FT                 ILLQKQDDNKLHPVAYFSKTTSKDESKLHSYELETLSIIYALKRFHTYVHG
FT                 LPIKIVTDCNSLVETLKNRNASAKIARWSLFLENYDYTICHRSGTSMPHVD
FT                 ALSRTEAVGAIGEIDLDFQLQVAQTRDPSIEALKHRLESEEVDGFLLQDGL
FT                 VYRDIPDGQPQLYVPSEMVDNVIRHTHERIGHLGINKTFSKISQHYWFPHM
FT                 KPTIDKFIKNCLKCIVYSAPHHTNARNMYSIPKEPLPFDTIHIDHLGPLPS
FT                 SPLRKKYILVVIDAFTKLTKLYPTSSTNAKEVCSALSQYMSYYSRPRRIVS
FT                 DRATCFTSTLFEDFLESHNISHVLNATGSPQANGQVERVNRVLRPILSKLS
FT                 DAPDQTDWVSKLRSAEYALNNTVHTSTNFCPSVLLFGVEQRGKVPDELAEY
FT                 LDEKFDRASRDLEAIRAKALENIEESQRKNEEYFSKKHKPPQCYKEGDLVA
FT                 IRYSDTTDSGNKKLNPKFRGPYVIHKVLPHDRYVVRDVEGCQLTQLPYDGV
FT                 LEANKLRRWTESSD"
XX
SQ   Sequence 4442 BP; 1178 A; 1178 C; 898 G; 1188 T; 0 other;
     tctcagaagt gggattacca acaaaaatcg cctgcaaaac cgcctgcaag ccgcctaacc        60
     agcctgtatc cgtgtgtacc tgtgtacgtg tgtgtatgac acaacgccat tttccatcat       120
     gctgaggaaa aaagtacttc gtcgggcgct tattgagacc ggtgtcgacg tgccggattc       180
     cgctaccgtc acacaattcc gacagcttta tgcctcccac gagccggtcg ctcgttcccc       240
     ccgtgcggcg ccgcccacta cctcagcgac gacaccggct cccgcttgtg caaaccacca       300
     agatgccgcc attttgtgcc ttccacatta caatggcgac gacgattttg cgcatcacga       360
     aaatgttgcg aacgctgctg cttcgatgca aaataccact gatgccgttt ccgcccttcc       420
     ttctgcccat ggtatggccg ccgcccttcc ccgcggccct gacgacatcg aggcccaatt       480
     tgagaagctg cgacagcagc agcagctagc tgaattacgc caaaaggtgc accaacttga       540
     aacgccgcag ccagtcgccc tttgcgtaaa ggactttgaa gcttttatcg agccactcga       600
     cgtcgataag aaccccaatg tcatccgatg gttccgcgat ttggagcgtc tctttgcact       660
     ttaccgagtg cgcgatgcag ataaattttt cttcaccctt cggctcctca ccggcacagc       720
     cgctaacgtc gcaaaagaac ttgttgtaac cacttatgat gagttgaaga aagagttgat       780
     cgacaatctt cacgtcgttg ctacgcccga atctgtttat cgccaactcc gtaaccgtcg       840
     attgcggccc caggaatccg ccctgcacta cttgtttgac atgcagcgca tcgcagacca       900
     agccagtatc gccgattcag aactgatccc gatcgtcatc gacggcttgg gaagcccgtc       960
     aattacgtcg agtctgcatt tcatgcctct tacgatgaac gacttccgga agaaattgaa      1020
     acttttcgaa tcttgccgtc atctttgcac cacccagccc ccttccgctg atgcccgggc      1080
     cacaacgaac agctgtatgg aacggccccg cccatcgcag gaacccatcc gctgcttcaa      1140
     ctgctcccga ttcggacacc ttcagaacgc gtgcccgcga cctaagcgcc cacccggcgg      1200
     atgttttcgt tgtttccaga ctggacacgt ctaccgtaac tgccctgaac gtcgggccaa      1260
     cgccactgtc gagggcaata ctagttcgga cgaagctctc gccacaaatc aagaggtgag      1320
     tttgacattt ttccaccctt ctgctaagcg taccaccctt ccctgcgttc gttcccttct      1380
     cgacacagga agtcctgtga gcttcattag cgacacgata gtaccagtta agatgctagg      1440
     acctctttcc gctaccgaat actgcactat gattaaggga ccactttact ctcgaggaaa      1500
     aatcgattgt actatccgat ttaagaatca ttccgttcga cactctttta ttatattacc      1560
     tggaattgcg tggccagtca ttatcggtcg cgatttactg aactcactta atatttttct      1620
     tacgtattca tctcctacaa cttcatgtat tactaaacct ctatcgacgg aacttaaaga      1680
     agtagatacg attcttccag aaaaattaga cgatgctatt aggagtattt gtgcgctcga      1740
     tgtggctgaa gccgataatg aattggattt aggaaaaaca ctatctttgg aacaacgttc      1800
     aatagtcaat tctattgttg aaaactcata cctcaactat acttcagatg ttataccgct      1860
     caaacaccct atgaaaatca atctgactca tgatacacca atatttacta agccgcgaag      1920
     actctcttat ggtgaaagac agcaggttaa gcaaattgtt gataaactgt tagcagaaaa      1980
     catcatccgg cccagtaatt ctccttatgc ttctgcgctt gtcctcgtta ggaaaaagag      2040
     tggcgaggtt cgtatgtgtg tggattaccg gcccctcaac aaaattacag ttcgggacaa      2100
     ttacccccta ccccttatcg aaacttgttt ggagcatctg tgtggaaaaa aattcttcag      2160
     tttgctggat ttgaaaagcg gattccatca agtcccaatg agtgaggagt ctatccccta      2220
     cacttctttt gtgaccccag atggtcaatt tgaatatctg aaaatgccat tcggtcttcg      2280
     taacgcccct tccgaattcc aacgttttat taattctatc ttaagggaat tcattgatga      2340
     tggcagaata gtagtgtacc tcgatgacat catcatcgct tctaccgatc ttagctctca      2400
     cttcagtacc cttcggtccg tattagaaaa gattaagcag aataatttag aacttcgtct      2460
     tgacaagtgc aaatttgtcc atgaagaaat agaatacttg ggctacaaag ctaacttttc      2520
     tggaattcag cctagtgata ggcacattaa agcacttact aattacccta tgcccactaa      2580
     tttaaagcaa ctcagacgtt gtcttggtct gttttcatac ttccgacggt ttgttccatc      2640
     tttctcttgc atcgctaaac ctatgacaaa acttcttcag aaggacgaag tatttaactt      2700
     cgattcaaat tgcgtgcatg cttttgaaac cttacgtgac aaacttgtgc attctcctat      2760
     cctttccata ttcgacccaa aacgggaaac cgaattacac tgtgacgcaa gttcctttgg      2820
     ttttggcgct attctccttc agaaacagga tgacaataaa ttgcaccctg ttgcttactt      2880
     ttccaaaacc acttcaaaag acgagtccaa gttacacagt tatgagcttg aaactctttc      2940
     catcatttac gctcttaagc gcttccacac ttatgttcat gggctcccca ttaagatagt      3000
     tactgactgc aactctctgg tcgagaccct taagaaccgt aatgcttccg ctaagattgc      3060
     caggtggtcc ttgtttctgg aaaattacga ttataccatc tgtcatcgct caggcacttc      3120
     tatgcctcat gtcgacgcac tgagtcgcac cgaagctgtg ggtgccatcg gtgagattga      3180
     ccttgacttc cagcttcaag tagctcagac gcgtgaccca tctatcgaag ctcttaaaca      3240
     tcggttagaa tcagaagaag ttgacggatt cttacttcaa gatgggcttg tctatcgcga      3300
     catacctgat ggtcaacctc aattgtatgt cccttcggaa atggtcgaca acgtaattag      3360
     acacactcac gagcgaattg gccacctggg cataaacaaa accttcagca aaatcagtca      3420
     gcattactgg ttcccccaca tgaagcccac tatcgacaaa ttcattaaga actgcctcaa      3480
     gtgcattgtt tattctgcac ctcatcatac taatgcccgg aatatgtaca gcatccctaa      3540
     agagccctta cccttcgata ccatccatat tgaccattta ggtccgctcc ctagttctcc      3600
     cttacgcaag aagtatatac ttgttgttat cgatgctttc actaaattaa ccaaacttta      3660
     cccaacctcc tcaactaatg cgaaggaagt gtgttctgcc ctttcccaat atatgtctta      3720
     ctatagccgc cctaggcgga ttgttagcga tcgagctact tgtttcacct caaccttgtt      3780
     tgaggacttc ttggaatcgc ataacattag ccatgtcctc aacgccaccg gatccccaca      3840
     agccaatgga caggtagaac gggtgaaccg tgtgttgcgt cctatcctta gcaaactatc      3900
     tgatgctcca gaccagaccg attgggtatc caagttgcgg tcagccgaat acgctttaaa      3960
     caataccgtc cacacatcta cgaacttctg cccctctgtc ctactctttg gtgtcgagca      4020
     acgcggtaaa gttccagacg agttagccga atacctggat gagaaatttg atcgagcctc      4080
     tagggactta gaagccattc gggctaaagc gttagaaaac atagaagagt ctcaacggaa      4140
     gaatgaggaa tactttagca aaaagcacaa accaccacag tgctataagg aaggtgactt      4200
     agtggctata cgttactctg atacgaccga tagcggtaat aagaagctca atcctaaatt      4260
     caggggacct tacgtcatcc ataaagtgtt gccccatgat aggtacgtgg tacgcgatgt      4320
     agaaggatgt caactcacac aactacccta cgatggggtt ctagaagcga ataagttgcg      4380
     acgttggacc gagtccagtg attaggaaat tgagggcaat ttattgttca ggatagccga      4440
     gc                                                                     4442
//
ID   CR1-1_AG    repbase; DNA   ; ANG   ; 5401 BP.
XX
AC   .
XX
DT   13-2002 (Rel. 7.11, Created)
DT   13-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   CR1-1_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   Non-LTR retrotransposon; reverse transcriptase; CR1 clade;
KW   endonuclease; DNA/RNA-binding; CR1-1_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5401
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-1_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2(11), 1-1 (2002).
XX
CC   [1] (Consensus)
XX
CC   CR1-1_AG is a family of CR1-like non-LTR retrotransposons.
CC   The CR1-1_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~20 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-1_AG occurred less than 1 million years ago.
CC   Integrations of CR1-1_AG have not produced target site
CC   duplications.
CC   The consensus sequence encodes two proteins: a 440-aa
CC   CR1-1_AG-ORF1p
CC   (positions 425 1745) and 941-aa CR1-1_AG-ORF2p (positions
CC   1746-4568). CR1-1_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (aa positions 3-57) and gag-like zinc knuckle
CC   regions (aa positions 334-442). CR1-1_AG-ORF2p is composed
CC   the AP endonuclease and reverse transcriptase domains. The 3'
CC   terminus
CC   is composed of the CAT microsatellite.
XX
SQ   Sequence 5401 BP; 1641 A; 926 C; 1288 G; 1546 T; 0 other;
     tgatgagtga ctgttgacaa gtgcagttcg ttgacaagtg tgactgttta gctctgtgtt        60
     gtgacgtgaa ataagttgtg taaaatagag ctaagtgctc aaatttttag atacgtgtgt       120
     agataaatgt tcgtggatgc tctcggtgtc agtgtgtttt gcaaaggtaa aagtgacctt       180
     gttaaaaaaa caaaagattg gtgcggtcaa cagcgttccg ccgttggtgg cagtaaccga       240
     tccttgttgt gtagataagt gtttgtaccg tttttttatc catgtatgtg tgacaccggg       300
     agatacgtag agtagcatat tagtatagta gtgtttgtgt cgcttttggc cggcgtttga       360
     aaccaggtaa gcgaaaaaaa acacactttt ataagacttc gcccgtattt gttttttaca       420
     cggcatggag tgtttaaaat gctccgccgt ggtgggaacc agcgatgacc cgataatttg       480
     ttcagggagt tgtgggttta tttttcaccg tcggtgtatt acacccacac tcaacaagcc       540
     tgcggtcaaa ctaattaatg agaaccgcaa tgtcgtatat atgtgtgaca tttgtttaga       600
     tcaaagcgcg ggcttggttc atatggatac tgatgcaact aaatcaaatg atttgcttgc       660
     acaaacactg agggatttgg aagccaatgt gagcgtgtgg atttctagcg ctttagagag       720
     aggaatcgag actctcaaaa ctgagctttg cgcgcaagtg gagcgtaagt tggaaacaac       780
     tttgcgcgaa acattaagcg ctatagaagc ctcgaaaatg tcgaaggcgg ccttgcgtgc       840
     aacttctgac actccgcaaa ccagcaaaac agtgcaggat gtaaatttag aaacatgggc       900
     tacagtaacg aaaaaaagaa aaaggacaaa tagtggagac agcaatgttc aaactattat       960
     taatagattt gacgagggaa acaataaagt tactcccaaa attaagaaaa ttaacgatgt      1020
     gaaggagcct atgggaaaaa ataaagaaaa taataaaaca ctggttattg ttcctaaggt      1080
     ggtgcagtct tgcgatagac caagagctga ccttagcgcc agattggatc cgaggaagca      1140
     gcaattgtcg gaattccgca acggcagaga cggacaagta tatgcacaat gtcctgctct      1200
     ggcgaattta gatagcatta gaaaagaagt agaagacatt ttaggagacg attattcgac      1260
     atccttacct atggcacgcg ttaaaataat tggaatgagt gaaaaatatt cttcttctga      1320
     cttagtagat cttttgaaat ctcaaaatga gggaattccc tggaaacagg agaatgtaat      1380
     tggaatgttt gagagtaaga tctacaagta ccagatacat aatgtggttt tggaaatcga      1440
     ccatgaaact gataagtgtc tggcaaaact tgataaaatc aatattggat ttgatcggtg      1500
     taaaatttct agatccattc acgttatgcg ctgctttaaa tgtggtcaat ttagccataa      1560
     aagcactgac tgccaaaata aggaagcgtg ttcaaagtgc agtggcgagc accgaacgtc      1620
     ggattgcacc tcgtccatcc tcaaatgtgt aaattgtgtt ttggctaaca catccaggaa      1680
     cctgaaacta caggtacaac atgcggccaa tagctatgaa tgcccgctgt ttaaaaaaca      1740
     ggtagagaga cgaatgcaac tttctcaata gcaggggagg ggtggaatta gggcggttca      1800
     gagagatttt atatttcaat gttgccggtc tttcatctaa ctatgctatg tttcgtgaga      1860
     cagtagaaaa agttcaaccc ttgttggtct tgatctctga aacccacgta accgagaagg      1920
     aggcattcga gcaattttat ttaaaaggat atagggtagt gtcgtgttta tctcattcac      1980
     gtcacacagg aggtgttgca gcttatgcca gaagtgacgt tgtccttaaa gtgattttaa      2040
     acgagtcatt ggaaggcaat tggtttctcg gtgtagcggt ttctcggggt atgacggtag      2100
     gcaattatag catattgtat cactcaccta gtgcgagtga ttcgaggttc gtagatattt      2160
     tggaagaatg gttagacagg tttttggatc ttagtaagtt gaacattatc gtcggtgact      2220
     ttaatattga ctggttaaat gttgaaaaat ctgcgaaact gaaaagttta atggattcag      2280
     taaacatgaa ccaaaaagtc aatgaattca cacgaattgc taggcagagc aggacattga      2340
     ttgatcaggt ttacagtagt attgactcaa tcaaagtcac tactgatccg ttattgaaaa      2400
     tatcggatca cgaaacactt gttttgaaca taaacgatga acgttgtaaa acgattcaac      2460
     ggaaagttaa atgctggaat aggtattcga aacatgctct ttgcaataat gtgtcacaag      2520
     gcttgcagtg tggtgcatct gattttgatg aggctgctga cttgttatgg aacacattga      2580
     aacatgcaat gagcaccttg gtggaagaaa aaacaattgt ttctagagaa actagtaggt      2640
     ggtatacttt ggatctcgca cgtgctaaac ggaaaagaga caaagtgtat aaaaaattta      2700
     ttagaacgaa tagagataat gattggtctg agtatactaa acttagaaac agttatagta      2760
     gggatctcaa aaatagacga agcgatttct ttagcaatga aataaacaag cacaagaaaa      2820
     atagcaaaga gttatggaaa gtcctcaaaa gcatgttaca acctgatgaa tcatgcgttt      2880
     cagttgtaaa atttaacggt gtgattgagg ctgacgactc catcatttgc aacaagttta      2940
     actcgttctt tgtgaacagt gttttagata ttaatcaaaa cattgcttct gtcagtgaac      3000
     ctagctatta cgtagatagt gctactccac gatgccattt cagatttcag aaaattactc      3060
     ttgaacaact aaaaaccatt tgtttcaacc tgacaaaaac ggcaggtata gggaatgtaa      3120
     gttcaacaac catacaggat tgctatcatg tgatcggaga ggaccttctt atggtgatta      3180
     atcaatcact agagagggga tgttttccga aatcatggaa agaatcattg attataccta      3240
     ttcctaaagt gaacggagct gccaatgcgg aagattttcg ccccataaac atgttgcatg      3300
     tgctcgaaaa ggtgctggag acagtagtta aggagcaatt ggttcagttt ctgaacagaa      3360
     acgagctgtt gatccgagag caatcaggat atcggcaagg acactcttgt gagactgctt      3420
     tgaatcttgt actggcgagg tggagggtgt tgatggatcg gagggaatcg atagttgctg      3480
     ttttcttgga tctaaaacgg gcatttgaaa caatatctag gccattgttg ctttctacct      3540
     taaggcgttt tggtattgtg gggagggagc tcagttggtt cgaaagttat ttaaaagaaa      3600
     gaactcagag aactttattt ggtagctctg tatcagagcc tatagaaaac acccttggtg      3660
     ttccgcaagg tagtgttctt ggaccaattt tgtttatcat gtacatcaat gacatgaaac      3720
     aggttttgaa ggcttgtgag atcaatcttt ttgccgacga tactgttttg ttcatctcgc      3780
     acaaagaaat caagcaagca gagtctctga tgaatatcga tttaaacgct ctggatggat      3840
     ggctgaagta caaaaagctg gcattaaaca ttaacaagac ttgttacatg gtgatgtctg      3900
     cgggtgtatt ggaagaacct ccatctatcg taataaattc ggaactaatc gaaagagtta      3960
     gacaggctaa atacctggga gttatcctag acgacaggtt gaagttccac gctcacattg      4020
     actgggtcat cgctaaagtg gcaaagaagt gtggagtgat aagtagattg gcgaaggatc      4080
     tcgatttttt tgggaaagtt catctctaca aatcattgat ctcgccacac tttgacttct      4140
     gctcatccat tttgtttctt ggcaacaaag gtcaaattaa aagacttcaa aggttgcaaa      4200
     accggattat gaggttaatt ctggggtgcg gtcgacgtac gccgtccgcg gttatgctga      4260
     atattcttca atggatgtca gtagagcagc ggattgtgta ccagaccatg acttttatat      4320
     ataaaatgtt aaagggcctg ttgcctgggt acctggggga gagcatagtt cgggggtccg      4380
     atatccatcg gcaccacaca cgcagggcaa atgagccgag ggtacctaac ttgcattccc      4440
     aaagtgccag aaactctttg tttttcaaag ggattcaacg gtacaacagt ctaccagatg      4500
     aaattaagaa tgcgagaaac ttgccggatt tcaaacgtaa gtgcgtcata tatgttgaac      4560
     aaactgtata atgtgaaata tgtgtagatg tcccatgtca ttatgtaatg tgtaactgca      4620
     gttgtcatca cgatctttat gatgatgata agatttttct ttatatacta taattaaaat      4680
     tagaaaaaat ataagaaaga gtcaacatag gtttgagaca cgcgcgcgta caagtggata      4740
     ttcgggatct atttggggga atttacggtt tgcacacggt ctgggaggtc acaacaggat      4800
     tcactcattg atgattgtaa gtggccaatt ccagatacat taggttcacc tgcttcggaa      4860
     ggtagtgccc tagagccaat cattggcact agtggaactg gccatatgca tgttgcagtt      4920
     gtgttctgat aagtagtgcg ccggatccat tagttggttc ttggcgagct acgtaaggga      4980
     tacattagat tctcctgctt cggaaggtag tgccctggag cctgccattg gtgccagaga      5040
     ccctggggcc agcggttggc actagtggaa ctggccatat gcatgtcgca gttgtgtcct      5100
     gataagtggt gcgccagatc catttattgg ttcttggcgg gctacgtaaa ggatgctagg      5160
     gaataccatt gtattcgatg gagtatgacc cgttttttct tgatgaaact atgttggtca      5220
     tcttgggtgt gtgtatgact cggacagttc ctctgagagt tttccgatgc caccacttgc      5280
     tcgtacaaaa tattttaata tacctatcag agtaatatta tcgtaaagat acttccgtcc      5340
     ttctcaaacc tatgttgggg aaagaggtgg gacttatcat catcatcatc atcatcatca      5400
     t                                                                      5401
//
ID   GYPSY9-I_AG repbase; DNA   ; ANG   ; 5973 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY9-I_AG is an internal portion of retrotransposon GYPSY9_AG -
DE   a consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; AP protease;
KW   Gypsy clade; 4-bp TSD gag; RNase-H; mdg1 lineage; GYPSY9-I_AG;
KW   GYPSY9-LTR_AG; integrase GYPSY9_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5973
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY9_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 177-177 (2003).
XX
CC   [1] (Consensus)
XX
CC   GYPSY9_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG,
CC   GYPSY14_AG,
CC   GYPSY15_AG, GYPSY16_AG, and GYPSY17_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY9-I_AG consensus was reconstructed after multiple
CC   alignment of 12 copies.
CC   The consensus encodes the 458-aa GYPSY9_AG1P gag-like protein
CC   (pos. 890-2263) and the 1175-aa GYPSY9_AG2P (pos. 2215-5739).
CC   The sequence of the LTRs flanking GYPSY9-I_AG is deposited as
CC   GYPSY9-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           890..2263
FT                 /product="GYPSY9_AG1p"
FT                 /translation="KQYEKGMITISDKIEILKYIFKKIQDPNQRTCTRTQL
FT                 RIKAEETFKEIQNDIEKNRYKYTFNKLLEFSKISNALIQNIIAMSTSKTND
FT                 DSRNKSSDFSTNSSEDKNINLTLLTTSRLSFKLLAQIIFVLLKLHKKIKMA
FT                 NFDIKTATGLVPTYDGSPDTFNAFEDASTLLFELNPNHEEMLVKFIRTRLT
FT                 GKARIGLPSNITTFNELISDIKRRCEEKTTPDKVIAKLKSIKTRDAQSICN
FT                 EVELLSEKLKVIYLKQGIPEKIANDMAIKTGIDTLKEKVANSETKILLKAG
FT                 TFATITDATQKVMENESEETNRTTNVLNINTQRYNRNYPRNQGNQNRNNQN
FT                 NYGPNTNQPYRNYYNNRNNNNFNNRNNNNSSYNNNLRNNIRYNNRFIQGYN
FT                 NERYNSNFNGNQNRPNKNLRAITNGETGQQQRNIYHTTAQIQEVEENNFLD
FT                 QQESTQTLDQFTH"
FT   CDS           0..0
FT                 /product="GYPSY9_AG2p"
FT                 /translation="FFRPTGVNSNPRSIYSLELNGVDYIKIRLSIANNETS
FT                 ILLVDTGASISLXKASKLKKNHGPIRSDSISLTGISNTPIYSKGSTTCTIY
FT                 FNNLELEHDFVLVPDEFNIGADGILGRDFYKLYRCSINYHLEMLTFTCQGE
FT                 EIQHNIEEDDGKGFILPIRSEVVRKVYLPNITEDTIVFAQEIQPGVFCGST
FT                 IISKDNQLIKFINTRQRNIYITNAEFKPITEPLANYEVKQVNNKVGEINND
FT                 RLQKLLQKIKVDKIPTTEIYNLKKIVTEYNDIFCVEDDPITTNNFYPQKIE
FT                 LKDNIPTYIPNYKQIYSQADEIQNQVDKMLKNDIIEHSVSPYNSPILLVPK
FT                 KSTDDNKKWRLVVDFRQLNKKVIPDKFPLPRIDTILDQLGRAKYFSTLDLM
FT                 SGFHQIPLENDSRKFTAFSTGSGHYQFKRMPFGLNISPNSFQRMMAIAMAG
FT                 LTPELAFVYIDDIIVTGCSARQHISNIVKVFDRLRSYNLKLNPEKCSFFKT
FT                 EVTYLGHKITDKGIYPDDSKFETIRNFPLPKNADEVRRFVAFCNYYRKFVQ
FT                 NFAKIAKPLNNLIKKNVKFIWTDECQKAFNSLKESLLSPAVLKYPDFTKEF
FT                 ILTTDASDVACGAVISQITDGKDHPIAYASKSFTQGEKNKPIIEKELTAIH
FT                 WAINYFKPYLYGRKFTVKTDHRPLVYLFGMKNPTSKLTRMRLDLEEFDFKI
FT                 EFLAGKTNVVADALSRIITDSDELKASIPKNKSDISNPILMVNTRAMIKKN
FT                 NVVENKENKKKKEDIIEEYNPTNMYETDRPSDTTKMLKMKSNINEKDEFIE
FT                 LVIYNHNYYKALGKFKIPITSAKQSQTLEFVLHESCLIARKYHKNLAIASN
FT                 DRLFEFYSMSTIKEIINKMITDVHIVVFTPPRLVEDTEEQIKIMSNFHTTP
FT                 SGGHIGQFKLYSKIKDKFKWKNMKADIIKYVKSCKACATNKILKHTKEKTV
FT                 VTTTPSKPFNIITIDTVGPLPKTANNNRYAVTIQCALSKYIVIIPIQNKEA
FT                 NTIAKALVENFILTFGNFLEMRSDQGLEYNNEILAQISKILEIKQTFAAAY
FT                 HPQTIGSLERNHRSLNEYLRSYTNEHHDDWDQWTKFYEFVYNTSVHSTTNF
FT                 TPFELIFGRQANLPQELYKTKVELLYNIEQYYNEMKFKLQKSHEIAKQKLI
FT                 QAKLQRQAKLNENINK"
XX
SQ   Sequence 5973 BP; 2513 A; 996 C; 950 G; 1514 T; 0 other;
     tggcgaccgt gaccttaatc tgcaatcgac aggcagaagt gtaagcaaat tatttcaagt        60
     aaaatgtgat acgtacaacg gtaacgtaaa gcttaagtgt cgtgtgacga accaaaagta       120
     ttgtgaccat aaccggcatt cggcggaaag tgaaaaaaaa agtgtcaaat gtgcaatttt       180
     tttttacgga acattcatca acgcagctgg cgcaagtaac ccatatgtaa acaaaagcaa       240
     taacgatgaa agaacagcta caagcaagtt tcgtacagtg cagaatgaaa aataaaaaca       300
     tttagtgcag tgtaagtgcg aaatgaatgt ttaattgatg aacaaacatt aaccgtacac       360
     agtgttgtga gaacctacct aaatgtgtaa aaacgtatta acgctcatgc gatcggttta       420
     cctagtagag taaccttgaa atgggtaaac tatagaaaaa agcacacttt gttaaaaagg       480
     gttgttgtta cccaagttca gcacagtaca gtatagcaat ctatacgatt cttggagcaa       540
     gtgatatgga atgataaagt gcagtgcaaa acaagctgtg gtcagtgtga ttgaatggaa       600
     caaccgttcc caccgtggaa gacgaaaaga aaaaccgagc ccactgccta atctggattg       660
     gcagacgaga atgaacaagt gtcccaaccc cgacaagaca tcgagcgaca actgatgaca       720
     tcgtggaaat tcacaccaag caccgattaa actgcaagca ccggtataaa tacagcgtag       780
     aatcagcagc aacaaaatgc acgtcgcata ttccattaag gtactgtaac tttaaaatat       840
     ggtcaaatgg gttttcaaag ctaggaaata ggaaatagga agtaattgaa aacaatatga       900
     aaaaggaatg attactataa gcgataaaat cgaaattttg aaatatatat ttaaaaaaat       960
     acaggatcct aatcaaagaa cttgtacaag aacacaacta agaattaaag ctgaagaaac      1020
     atttaaagaa attcaaaatg acatcgaaaa aaatagatac aaatatactt ttaacaaact      1080
     attagaattt agcaaaattt ctaatgcatt aatacaaaat atcattgcta tgagcacatc      1140
     aaaaaccaac gacgattcac gtaacaagtc atctgatttt tctacaaata gctcagagga      1200
     taaaaatatc aatttaacac tgttaacaac tagtagatta tcatttaaac tcttagctca      1260
     gatcatattt gtcttactaa agctgcataa aaaaattaaa atggctaatt ttgatattaa      1320
     aacagccaca ggtcttgtac ccacatatga cgggtcaccc gataccttta atgcatttga      1380
     ggacgcttca acgctattgt tcgagttaaa tccaaaccat gaagaaatgc tcgtaaaatt      1440
     cataagaacc agactgactg gtaaggctag aatagggtta cctagcaata taacgacttt      1500
     taatgaatta atcagtgata taaagagaag atgtgaagaa aaaacaacac ctgataaagt      1560
     aatagcaaaa ctaaaatcca taaaaacaag ggatgcacaa tcaatttgca atgaggtcga      1620
     actactttca gagaaactga aggtaattta tcttaaacaa ggaattccag aaaaaatagc      1680
     taacgatatg gcaataaaaa caggtatcga cacacttaaa gaaaaggtag caaactctga      1740
     aactaaaata ctgttgaagg caggtacttt tgcgacaata accgatgcaa cacagaaagt      1800
     aatggagaat gaaagtgaag aaacaaacag aactactaat gtccttaaca taaatacaca      1860
     acgctacaat agaaactatc ctagaaacca aggtaaccag aataggaaca atcaaaacaa      1920
     ctatggtcca aatacaaacc aaccataccg aaactactat aataacagaa ataataacaa      1980
     cttcaacaat cgaaataata acaatagcag ctacaacaac aatctgcgaa acaatattcg      2040
     ctataacaac agatttattc agggatacaa taatgaaaga tacaactcca acttcaatgg      2100
     taatcagaac agaccaaaca aaaacctaag ggcaataaca aatggagaaa cagggcaaca      2160
     acaacgaaac atataccata ctacagctca gatacaggaa gtagaggaaa ataatttttt      2220
     agaccaacag gagtcaactc aaaccctaga tcaatttact cattagagct aaatggagtt      2280
     gattatataa agattagatt gagcattgca aataatgaaa catcaatatt actagttgat      2340
     acaggagcat caatttcttt attcaaagca agcaagttaa agaaaaatca tggcccaata      2400
     cgttcagact caatatcatt aacagggata tctaacacac caatttattc aaaaggaagt      2460
     acaacatgca ctatatattt caacaatcta gaattggaac acgattttgt attagttcca      2520
     gatgaattca acataggagc agatggtata ttaggcagag acttttacaa actatacaga      2580
     tgttcaatta attatcattt ggaaatgctt acattcacgt gtcagggaga agaaattcag      2640
     cataacattg aagaagatga tggaaaagga tttattttac caatcagaag tgaagtggta      2700
     cgtaaagtat atcttccaaa cattacagag gataccatag tcttcgcaca agaaattcaa      2760
     ccaggagtat tctgtggcag cactattatt tcaaaggata atcagttaat taaattcatc      2820
     aatacaaggc agagaaatat ttacataaca aacgcagaat ttaaacccat tacagaacca      2880
     ttagcaaatt atgaagtgaa acaagtgaat aacaaagtag gagaaattaa taatgataga      2940
     ttacaaaaac tattacaaaa aattaaagta gataaaatcc ccactacgga aatttataat      3000
     ttgaagaaaa tcgtaactga atataacgat atattttgcg tagaggatga tcccattact      3060
     acaaataact tttaccctca gaaaattgaa ttaaaggata atattcctac gtatataccg      3120
     aattataaac aaatatactc acaggctgat gaaatacaaa atcaggtaga caaaatgctt      3180
     aagaatgaca taattgaaca ctcagtctcc ccatataact cacctatatt attggttcca      3240
     aagaaatcaa cggatgataa taaaaaatgg agacttgtag tagatttcag gcagctaaac      3300
     aaaaaggtta taccagataa atttccatta ccaagaatag atacaatatt agatcagcta      3360
     gggagagcaa aatattttag cacccttgat ctcatgtcag gattccatca aataccttta      3420
     gaaaatgatt caagaaaatt tacagctttt tcaaccggat cagggcatta ccaatttaaa      3480
     cgtatgccgt tcggtttaaa cattagcccc aacagctttc aacgcatgat ggctatcgct      3540
     atggcaggat taactcctga gctagcattt gtatatatag acgatataat cgttactggc      3600
     tgcagtgcac ggcagcacat cagtaacata gttaaggttt ttgataggtt aaggtcttac      3660
     aatttaaaat taaatccaga aaaatgttca tttttcaaaa cagaagttac ttatttaggt      3720
     cataagataa cagataaggg tatataccca gacgattcta agtttgaaac aattagaaac      3780
     ttccctttac ctaaaaatgc agatgaagta cgaagatttg ttgcattttg taattattat      3840
     cgtaaatttg tacagaattt tgcaaaaatt gctaaacctt taaataacct aattaagaaa      3900
     aatgtcaagt ttatttggac agatgaatgc caaaaagcat ttaatagttt aaaagaaagc      3960
     cttttgtctc cagcagtctt gaagtatccg gattttacta aagaattcat actaacaact      4020
     gatgcttcag atgtagcatg tggagcagtt atttctcaaa tcacagatgg aaaagatcac      4080
     ccaatcgcgt atgcaagcaa aagcttcacg caaggagaaa agaataagcc tatcatagaa      4140
     aaggaactta cagcaattca ctgggcaatc aattatttca aaccatatct atacggcaga      4200
     aaattcaccg taaaaacaga tcatagacca ttagtatacc tgtttggtat gaaaaaccca      4260
     acatctaaac taacaagaat gagactagat ttagaagaat ttgattttaa aatagaattt      4320
     ttagcaggta aaaccaacgt agtagcagat gctttatcca gaattataac tgattctgat      4380
     gagcttaaag catcaattcc aaaaaataaa tcagatatat caaatcctat tttaatggta      4440
     aatactagag ctatgataaa gaaaaacaac gttgtagaaa acaaagaaaa caaaaagaaa      4500
     aaggaagata taatagaaga atataatcca acaaacatgt atgaaacaga caggccatct      4560
     gatacaacta aaatgttgaa aatgaaatca aacattaacg aaaaagatga atttattgag      4620
     ctcgtgatat acaatcacaa ttattataaa gcgctgggaa aatttaaaat acccataact      4680
     tctgcgaagc aaagtcaaac actagagttt gtactgcatg aatcatgcct aatcgctaga      4740
     aaataccaca agaatttagc aattgcatcg aatgacagat tattcgaatt ttactcaatg      4800
     tcgaccataa aagaaataat taacaaaatg ataacagacg ttcacatcgt cgtatttaca      4860
     ccacctagac tggtagaaga tacagaagaa cagatcaaaa taatgtccaa tttccacaca      4920
     acaccatcag gaggtcatat aggacaattc aagctgtata gtaagataaa ggataaattc      4980
     aaatggaaaa atatgaaagc ggatatcatc aagtatgtaa aaagttgtaa agcatgcgca      5040
     actaataaga tcttaaaaca tactaaagag aaaactgttg tgacgacaac accctctaaa      5100
     ccttttaaca tcataacgat tgataccgta ggtcctttac caaaaacagc aaataataat      5160
     cgatacgcag ttacgatcca atgcgcatta tcgaaatata tcgtaatcat cccgattcaa      5220
     aacaaagaag caaatacaat agcaaaagca ttagtagaaa attttattct tacatttgga      5280
     aactttttag aaatgagatc agatcaagga cttgaatata acaatgaaat tttggcacaa      5340
     atatcaaaaa tattagaaat caaacaaaca tttgcagcag catatcatcc acaaacaata      5400
     ggatctttag agcgaaacca tagaagttta aatgaatatt tacgaagtta caccaatgag      5460
     catcatgatg actgggatca atggactaaa ttttatgaat tcgtttataa cacatcagta      5520
     catagcacaa ctaatttcac acctttcgaa ttaatatttg gcagacaagc taatttacca      5580
     caagaattat ataaaacaaa agtagagcta ttatacaata tagaacaata ttacaatgaa      5640
     atgaagttta aattacaaaa atcacatgaa attgcaaaac aaaaacttat tcaagcaaaa      5700
     ttacaacgtc aagcaaaatt gaatgaaaat ataaacaaat gaaacatacg aataggagat      5760
     tatgtctatt taacaaacga aaatagaagg aaattagatc cagcttatat aggaccattt      5820
     acagtcttag aaattacaaa tacaaactgc gttataaaac acaatcaaac aggaaaaacc      5880
     acaacagtac ataaaaacag attaaaacat ttttagtgaa taatgcactc tttcgtataa      5940
     actcaatcgt acattattca aaaagggtgg agg                                   5973
//
ID   GYPSY2-I_AG repbase; DNA   ; ANG   ; 5178 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY2-I_AG is an internal portion of the GYPSY2_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   gag; LTR retrotransposon; reverse transcriptase; integrase;
KW   4-bp TSD; AP protease; GYPSY2-I_AG; GYPSY2-LTR_AG; GYPSY2_AG;
KW   Gypsy clade.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5178
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "GYPSY2_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 75-75 (2003).
XX
CC   [1] (Consensus)
XX
CC   GYPSY2_AG is a family of gypsy-like LTR retrotransposons.
CC   GYPSY2-I_AG, an internal portion of GYPSY2_AG, is flanked by
CC   GYPSY2-LTR_AG LTRs. The GYPSY2-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 20 copies; they are
CC   ~1% divergent from the consensus sequence.
CC   The consensus sequence encodes the 1408-aa Gypsy1_AGp poliprotein
CC   (exons 846-1789 and 1874-5156, predicted by FGENESH)
CC   composed of the putative gag-like (pos. 1-300), AP protease
CC   (pos. 325-410), reverse transcriptase (pos. 514-681),
CC   and integrase (pos. 1030-1200) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="GYPSY2_AGp"
FT                 /translation="MLHSPPVRDVSTPDGVTPSADPAASGSKSPHVPTPPV
FT                 PNTPRVPGPSACDAMFMPPESQIDTLNAMQLKPPEMDTTDIQTFFFALENW
FT                 FDAWNITTNQHIRRFNILRTRIPLRVLPELRPLLENIRQYATDRYEVAKRA
FT                 IIEHFEESQRSRLHRLLAEMNLGDRKPSQLLAEMRRAANGAMTDSMLVDLW
FT                 IGRLPPYVQSAVIATNTDTNDRAKVADSVMDSFALYHRTGPYQTIHEVRNE
FT                 DFERLSRHVTELGQRLDAVLSKLNERERARPRSRTRQRQPNQDAVTPSGHC
FT                 YYHTQYGQAARNCRAPCSFNNRRYRLVITDPKTNIKFLIDTGADVSVIPRQ
FT                 HSSVPSKPSTMKLFAANSTPIQVYGESLYTLDLGLRRSFLWNFIIADVGTA
FT                 IIGADFLQHFHLLVDLRKKCLVDALTNVRSTGVPSQNPSEPTVKVCDSTSP
FT                 IATLLKEFPGLTALSTPGTLLQSEVTHRIETTGQPTFARPRRLPPEKYAAA
FT                 RKEFESLVQLGVCRPSNSSWASPLHMTKKADGTWRPCGDYRALNAKTVPDR
FT                 YPLPFLQDFTMHLQDKIIFSKVDLHKAYHQIPIHPDDIAKTAITTPFGLYE
FT                 FTTMPFGLRNAAQTFQRLIHDVLRGLEFVFPYIDDMIVASTSEAEHHEHLR
FT                 QLFERLEKHQLAINPAKCEFYRNEISFLGHLVNASGIRPLPDRVQAISELP
FT                 QPTTIMELKKFLAMINYYRRFLPHALETQGILLEMTPGNKKKDRTPLTWSL
FT                 EASEAFAQCKEQLKRATLLAHPVKNAELSLWTDASDFAAGAVLHQRTNEDL
FT                 QPLGFFSKRLEKAQQKYSTYDRELTAIYLAIRHFRYQLEGREFCIYTDHKP
FT                 LTFAFRQTHDNASPRRARQLDFIGQFSTDIRHIAGKDNVTADLLSRIETVH
FT                 ATPTIDYERLAEEQERDPELSDILSGKIQTDLFLQKTPIPGSPKSLYADCP
FT                 GGIIRPYITRSFRTQLLHAVHDLSHPGARATARLITERFVWLNARKESQDF
FT                 ARNCLACQRAKVGRHVKSPLIPYPATTARFSHINVDIIGPFPISNGNRYCL
FT                 TIIDRFTRWPEAIPISDITASTVVSALLFHWIARFGVPAHVTTDQGRQFES
FT                 SLFKELTKALGTKHIRTTAYHPQANGIIERWHRTLKAAITCKDTARWSEHL
FT                 PLILLGLRTTFKNDINASPAELVYGTTLTIPAEFFIAKPQNALADQSDFAK
FT                 TLEETMSSIRPQSTAWHTNRTPFVHSDLNKCTHVFIRDDTVRPALTTPYHG
FT                 PYKVLTRNPKSFQILLRGQPTLVSIDRLKPAYGAEEEATPAPQCSWEGLTT
FT                 NLLPPTTDHSETLPLPDVQANSDRRDATAASKPTSREQPVRNQTTPAPPSH
FT                 PTTSRQTDRAAVDAPPPSILRRNDQTVSTGVTRSQRKVIIPLRYR"
XX
SQ   Sequence 5178 BP; 1352 A; 1631 C; 1174 G; 1021 T; 0 other;
     actggtgacc ccgacgtgat cgcgtgcgcg agtgagtgag tggtaacctg acgaacaccg        60
     tgtccagccg agaaaaaacg tgtttccatt gttccacggt ccggaccgac ggcaacgttc       120
     ccccccatca tcgaggagcg gccgaccacg aaggaggcac cacgcaagcg cagccagcga       180
     aaaaaaaccc cgtgcacaaa ccccgaaccc acgtgagtgc aaatcgacac cgaaggtggc       240
     cgacagtgag gaacactgtt caggaacatt tttacccgac ggagcgaccg atcctagcgg       300
     aaaagtttcc tctcggtgct gagcgatcgc cgaacatttt gctgacacac cccgcgccgt       360
     gtcgcacacc cgccgagcat tttggtaccc gtacgtgttt gcgcacccgc cgatcataac       420
     ctcacacgta ccgccgagcg cgctccagac ccacgcggtt tttgtgtgtg caccgtgtgt       480
     gtgtgtgtgt gtgtgggtga atgtgcgcag gccgacgccg agcggattgc gtcagaattt       540
     tgctcgagct acgttcgtca tttttttcga ccgtgcaccg aagacgtcgt cagcgcacgc       600
     agccatcgtt ctcttctcgc cgacaccacc gaccgaacgc caccgaagat catcgcccct       660
     cgtttctcac accaccggcg tcatcgacga acgcagccaa cgagcgacta atcctaacac       720
     gatcgaccgc gtgtgcggat ttttcgtcgc cgaaggatcg acctagccaa cctccagctg       780
     gacttgcttg cgcccccgcc actaaggtaa gatccaccct tttttaacta accttagtcg       840
     taaggatgtt gcacagtccg ccggtccgcg acgtatcgac tcccgatggc gtaaccccga       900
     gtgccgatcc agccgcgagt ggatccaaat cgcctcacgt accaacaccg cccgttccga       960
     ataccccgcg cgtaccaggg ccgtccgcct gcgacgccat gtttatgccg cccgaatcgc      1020
     agattgacac tttgaatgcc atgcagctga aaccaccgga gatggacacc actgacattc      1080
     aaaccttttt cttcgcattg gaaaactggt tcgatgcgtg gaatatcacc acgaaccaac      1140
     atattcgccg ttttaacatt cttagaacgc gtataccgct tcgtgtcctt cctgagcttc      1200
     gccccctgtt ggagaacatt cgacagtacg ctacggaccg ttacgaggta gcaaagcgtg      1260
     caataattga gcactttgaa gagtcgcaac gaagccgctt gcatcgtctg cttgccgaaa      1320
     tgaacctcgg ggaccgaaaa ccatcgcagc tattagcgga gatgcgccgc gccgcaaatg      1380
     gagcaatgac ggactctatg ctggtagatt tgtggatcgg ccgtctcccg ccatacgtcc      1440
     agtccgccgt tattgccact aacacggata ccaacgatcg agctaaagta gcagactctg      1500
     ttatggattc gttcgcgtta taccaccgaa cgggcccgta ccaaaccatc cacgaagtac      1560
     gcaacgagga cttcgaacgt ctttctcggc acgtaacgga attaggtcag cgcttggacg      1620
     ccgtactgag caagctcaac gaacgagaac gcgcgcgacc acgctcacgt acccggcaac      1680
     gtcaaccgaa ccaggatgcg gtaacaccca gcggacactg ctattaccac acgcagtacg      1740
     ggcaagcagc gcggaactgt cgtgccccct gctccttcaa caatcggcgg cagggtagta      1800
     actcggccac tgcttccgat tgacgcttaa ccagaggcca acctcaacag atacacgtac      1860
     tttcgaccca tagctatcgt ctcgtaataa ccgatccaaa aactaacatc aaattcttaa      1920
     tcgataccgg tgcagacgtt tcagtaatcc ctcgacaaca cagttccgtc ccgagtaaac      1980
     cctccaccat gaagctgttc gccgctaatt ctacaccaat ccaggtttac ggagagtcgc      2040
     tctatactct cgatttggga cttcgccgat ctttcctttg gaacttcatc atcgcagacg      2100
     tggggacagc gattattgga gccgattttc tccaacattt ccatctgctc gtggacttgc      2160
     gcaaaaaatg tcttgtcgac gccttaacga acgtacgttc taccggagtg ccgagccaaa      2220
     acccgtcgga accaaccgta aaagtatgtg attccacctc accgatcgcc actctcctaa      2280
     aggaatttcc cgggttaact gcactatcca ctcctggcac cttactgcag tccgaagtga      2340
     cgcaccgaat cgaaacgacg gggcaaccaa cattcgcaag acctcgccga ttaccacccg      2400
     aaaagtacgc agctgcccgc aaagagttcg aatcactcgt ccagctcgga gtgtgccgcc      2460
     cctcgaatag cagctgggcc agcccgctac atatgacaaa aaaggccgac ggcacctggc      2520
     gcccttgtgg tgattaccgc gccctaaatg caaaaaccgt acccgaccgt tatccactac      2580
     cgtttttaca ggacttcacg atgcatttgc aagacaagat catattttcc aaggtcgatt      2640
     tgcacaaagc ataccaccag ataccaattc atccggatga tatagcgaag acagccatca      2700
     cgacaccctt tggactttac gagttcacta ccatgccttt cggattgagg aacgcagcgc      2760
     aaacattcca acgccttatc catgatgtcc tacgaggact cgagtttgtt ttcccgtata      2820
     tcgacgatat gatcgtagca tcaacgtccg aggcagaaca ccacgaacac ttacgccaac      2880
     ttttcgaacg attggagaag caccaactag ccatcaatcc agccaagtgc gagttctacc      2940
     ggaacgagat ttcctttctg ggccatctgg tcaacgcttc tggtattcgt cctctccccg      3000
     atcgagtcca agccatcagc gagctgccac agccaacgac gattatggag ttgaagaagt      3060
     tcctcgccat gataaactac taccgacgtt ttctgccgca cgccctggaa acgcaaggta      3120
     tacttctcga gatgactcca ggtaacaaaa agaaggacag aacgccatta acctggtcgc      3180
     tagaagcttc cgaagcattc gcccaatgca aagagcaact gaaacgtgca acgttattgg      3240
     cacatcccgt gaagaacgcc gaactttctc tatggaccga cgcttcagat ttcgcagccg      3300
     gagccgtact tcaccaacgc accaacgaag acctgcaacc actaggcttc ttctcgaaac      3360
     gtctcgaaaa ggcacagcaa aagtactcga cctatgaccg agaacttacc gccatctatc      3420
     tcgccatacg acacttccga taccagctag agggtcggga attctgtatt tatacagacc      3480
     acaagcctct aaccttcgcc ttccgacaaa cgcacgacaa tgcctcacct cgacgagccc      3540
     ggcagttaga cttcattggc cagttttcca ccgacatccg tcacatcgcc ggaaaagaca      3600
     acgttacagc cgatctgctc tcccgcatag agacagtgca cgcgacaccg accatcgatt      3660
     atgagcgatt agcagaagaa caagagcgcg accctgaact ttccgacatt ctcagtggga      3720
     aaattcagac ggacttgttc ctgcagaaga caccaatacc gggaagcccc aagtcactct      3780
     acgccgactg ccctggaggt atcatcagac cgtacatcac ccgatcgttt cgaacacaac      3840
     ttctccacgc cgtacatgat ctcagtcatc ccggagcccg cgccacagct agactaataa      3900
     cagagcgttt cgtgtggctc aatgcaagga aggaatccca ggacttcgct cggaactgct      3960
     tagcctgcca gcgcgctaag gtaggaaggc acgtcaaaag ccccttgata ccgtaccctg      4020
     caacaacagc gaggttcagt catatcaacg tagacatcat tggaccattt cccatcagta      4080
     acggtaaccg atactgcctt acgataatcg accgatttac tcgctggcca gaagcaatac      4140
     cgatctcgga tatcaccgca tctaccgtcg tatcagcact actattccac tggatcgccc      4200
     gattcggagt tccggcgcac gtaacaacgg accaagggag acaattcgaa tcctccttgt      4260
     tcaaagagtt gacgaaagcc ctaggaacga aacacatccg tacgacagcc tatcacccgc      4320
     aggcaaatgg aataatcgag aggtggcacc gcactcttaa agcagcaatc acctgcaaag      4380
     acaccgcaag atggagcgaa cacctaccgc taatactgct tgggctacga accacgttca      4440
     aaaatgacat caacgcctcg ccagccgaac ttgtgtatgg aacgacgttg accatcccgg      4500
     cagaattctt catcgcgaaa ccgcaaaatg ccctcgccga ccaatccgac ttcgccaaaa      4560
     cgttagagga gacgatgagc agcattcgac cacagagcac cgcttggcat accaaccgca      4620
     caccgttcgt gcattccgat ctgaacaagt gtactcacgt gttcatacgc gacgacaccg      4680
     tccgacctgc actaactaca ccttaccacg gtccatataa ggttcttaca cgcaatccta      4740
     agtcttttca gatactccta cgtggacagc caacgctggt ttcgatcgac cgcttaaaac      4800
     cagcgtatgg cgcagaagag gaagccaccc cggccccgca gtgctcgtgg gaagggctaa      4860
     cgacaaacct gctgccgcca acaaccgacc actcggaaac tctgccgtta ccggacgtcc      4920
     aggcaaattc ggaccgcaga gacgccaccg cagcctccaa accgacgtcg cgcgaacaac      4980
     cagtgcgtaa tcagacgaca cccgcaccac catcgcaccc gacgacatcg agacaaaccg      5040
     accgagccgc cgtcgacgcc ccaccaccct ccatcctacg ccgcaacgac cagacggtat      5100
     cgaccggcgt caccaggtct cagcggaagg tcatcatacc tctacgttac cggtgacacc      5160
     gctctaggag gggagtac                                                    5178
//
ID   COPIA2-I_AG repbase; DNA   ; ANG   ; 4232 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   COPIA2-I_AG is an internal portion of the COPIA2_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; reverse transcriptase;
KW   integrase; 5-bp TSD; Copia clade; COPIA2-I_AG; COPIA2-LTR_AG;
KW   COPIA2_AG; Salto 7.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   578-2937
RA   Parkes J.R., Warren M.A., Crampton M.J.;
RT   "Salto, a Ty1-copia group retrotransposon from the malaria vector
RT   Anopholes gambiae.";
RL   Direct Submission to Genbankac. AF93,.
XX
RN   [2]
RP   1-4232
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "COPIA2_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Direct Submission to Repbase Update (31-MAR-2003).
XX
CC   [2] (Consensus)
XX
CC   COPIA2_AG is a young family of autonomous copia-like LTR
CC   retrotransposons.
CC   COPIA2-I_AG, an internal portion of COPIA2_AG is flanked by 99%
CC   identical COPIA2-LTR_AG LTRs. The COPIA2-I_AG consensus sequence
CC   was reconstructed based on multiple alignment of 3 copies.
CC   The consensus sequence encodes the 1348-aa COPIA2-I_AGp protein
CC   (positions 189-4232). Partial protein (ac AAL55241.1) previously
CC   submitted to GenBank by [1].
CC   MDFSKVGVIRRNNRNYRSWAFKVQMLMMREGTWTYVDPGVAPTPVTPEWTEGDSKARATIALLVEDNQHN
CC   LIMTKNTAKETWDALKAHHHKATLTGKVSLLKEICNANYREGENMEDFLYGMEDHYSRLENSGEKLSANM
CC   QVAMILRSLPKAFDALTTALESRSDKELTMDLERAKLIDESEKLYGGKVQEERVLKAKSEAKPGACFFCG
CC   QPGHKKRECKEFLNRKSSGEGEKKKKIKPNKEQQVKTVRENDASSFTFMVRQPEIRGNDRSWLIDSGASS
CC   HMCSDKSAFTVMEQSLRSNVTVADGSENRVEGVGDCLIKCAVEYGEIIEITLRGVLYVPTLEGNMISIGK
CC   LAEKGVRAVFDNTGCKLVYGNTVVAVADKVSDMYWLRIAQDRVMKSVVKEHTKNCQHTWHRRLGHRDPAV
CC   IGEMKRRDLVSGLEVVDCGIRWTCECCIECKMARSPFPPVAEKTSTEVLDIIHSDVCGPMEETTLGGCRY
CC   YMTLIDDHSRYTFVYFLKKKSEAEDKFREHVKLVQNQFGRKPRIIRSDQGGEYSNKALRKFCADEGIKME
CC   FTAAYSPQQNGVAERKNRSLTEMGRCMLRDAGMHKRFWAEAINTTCYLQNRLPSAAVERTPFEIWFGRKP
CC   DLTNLRLFGCVGYVLIPSVKRKKLDVKAERMTFVGYSGEHKAYRMLNTQTGEIQISRDVRFLEIDDGSKE
CC   QTYGDPKIEDNPTESVEIEWSLDETKREAKTNVANDTISESEFYGWDCSDDGWPRGFWNDNDNNWLRGLW
CC   DDDDAEAGAAMPEAVLDAVPEAMPAAVPEVSNTPVRRLQRVTAGVPPARYDEEVYLVKESVAEPKTYKEA
CC   VSGPQSAEWKIAMAEEMQSHQENGTWELAELPPHRKAIGSKWIFKCKADEDGHFVRYKARLVAQGFCQKF
CC   GTDYDLVFVPVVKQITFRTMLVLASKRKMLTKHVDIKTAYLHGLLKKEIFMRQPQGFESDNPNEVCRLHR
CC   SIYGLKQAARVWNTKIDDVLKTMGFIQSTADPCLYIREKAGKSIFVLIYVDDVIVICNTEEEFSEVVHVL
CC   TLNFTISVMGNLRFFLGIRIRRNDGRYCMDQRAYLERVLERFGMLDAKPSKFPMDPGFLKRKEENGRKLD
CC   SPKAYQSLIGALLYAAEISRPDIAIATAILGRRVQDPSEADWNEAKRILRYLKGTLDSVLYLGSGGQKLE
CC   CFVDADWAGDESDRKSNSGFVFKFGGGLIGWGCHKQKCVALSSTEAEYVSLAECLQEVKWILKLMADVGE
CC   QLDGPVLVNEDNQSCIALTKGDRAERKAKHIDTKFNFVEDMVRDGIVKLQYCPTEHMQADLLTKPLQAVK
CC   LRQLREAIGIKPFSVEEE.
XX
SQ   Sequence 4232 BP; 1188 A; 859 C; 1239 G; 946 T; 0 other;
     ggttatgggc ccagctctgt gtggccagtt caattgaaaa gtgcgcgacg cggttcggaa        60
     agacagttat tttttcggtg tgaaaaaatt aggacatttc cggaaggtac gcagtgcggt       120
     taaggaatcg tgtgtttttt cgtggtgaaa gaaaaaaccc aaccgggaag gtttttgcac       180
     gggcaaaaat ggatttttcg aaagtgggcg tcatccggcg gaacaaccga aactatcggt       240
     cgtgggcttt caaagtgcag atgttgatga tgcgggaggg tacgtggacg tacgttgacc       300
     cgggtgtcgc gccgacaccg gtaactccgg agtggacgga gggtgattcg aaggcgcggg       360
     cgaccattgc tttgttggtt gaggataacc aacacaatct catcatgaca aagaacacag       420
     cgaaagagac atgggatgcg ctcaaggcac accaccacaa agccactctt accgggaaag       480
     tttcgttgct gaaagagatt tgcaacgcaa actatcgtga aggtgagaat atggaagatt       540
     ttttatacgg catggaggat cattattctc ggctggagaa ttcgggtgaa aaactctcgg       600
     cgaacatgca ggtggccatg attttgcgga gccttccaaa agcatttgac gcacttacca       660
     cagctttgga aagtcgttca gataaagagc taacgatgga tcttgagcgg gcaaagctga       720
     tcgacgaaag tgagaagctg tacggcggaa aggtgcagga ggagcgagtg ctgaaggcga       780
     aaagtgaagc aaaaccaggc gcgtgtttct tttgtggtca acctggccat aagaaacgag       840
     aatgcaaaga gttcctgaat cggaagagca gcggggaagg tgaaaagaag aaaaagatta       900
     agccgaataa agaacaacaa gtgaaaacag tgcgcgaaaa cgacgcaagt tcgttcacgt       960
     tcatggttcg tcagcctgaa attcgcggta acgatcggtc gtggctaatc gactcgggtg      1020
     caagttcgca catgtgtagt gacaaaagcg cgttcacggt aatggaacaa agcttgcgtt      1080
     caaatgttac cgtcgcggat ggcagcgaaa atcgcgttga aggcgttggc gattgcctga      1140
     tcaagtgtgc ggttgaatac ggtgaaataa ttgaaatcac gctacggggt gtgttgtatg      1200
     ttcctacgct ggaaggaaac atgatttcaa tcggtaaact cgcggaaaaa ggtgtgcgtg      1260
     cggtttttga caacaccggg tgcaagctcg tttacggaaa tacggtcgtc gcggtcgcgg      1320
     ataaagtgag cgatatgtat tggttgcgaa ttgcacagga tcgagtgatg aaatcagtgg      1380
     taaaggagca cacgaaaaac tgccaacaca cttggcatcg tcgtcttggg cacagggatc      1440
     cagctgtcat cggtgaaatg aagcggcgcg atttggtgtc ggggctagaa gtggtcgact      1500
     gcggtatccg ctggacctgc gaatgctgca tcgaatgcaa aatggcacgc tcgccatttc      1560
     caccagttgc ggaaaaaacc tcgacagaag tgctggatat aatccatagt gatgtgtgcg      1620
     gcccaatgga ggaaacgacc ttagggggat gccgttacta tatgacccta atagacgatc      1680
     atagtcggta tactttcgtc tattttctca aaaagaaatc ggaggccgag gataagtttc      1740
     gcgagcatgt aaaattggtt caaaaccaat ttggccggaa accgcgaatc attcgctccg      1800
     atcagggagg agaatactcc aataaggcgc ttcggaagtt ctgtgcggac gaagggataa      1860
     agatggagtt tactgcagca tattcacccc agcaaaatgg agttgcggag cggaagaacc      1920
     gatcgctaac ggagatgggt cggtgtatgc ttcgggatgc aggtatgcat aagcgatttt      1980
     gggcggaagc aatcaacacc acttgctact tgcaaaatcg attgccgtct gctgcagtag      2040
     agcgtacgcc attcgagatc tggttcggca gaaaaccaga tttgaccaac ctgcgactgt      2100
     ttggatgtgt tgggtacgta ctgattccgt cggtgaaacg aaaaaagtta gacgtcaagg      2160
     cggagcgtat gacttttgtc ggctattccg gcgagcataa ggcgtatcgg atgctaaaca      2220
     ctcaaacggg agaaattcaa attagtcggg atgtccgttt tcttgagatt gatgacggat      2280
     ccaaggagca gacatacggt gatcccaaaa tagaggataa tccgactgaa agcgttgaaa      2340
     tcgagtggtc tctcgatgaa acgaaacggg aagctaaaac taacgtggcc aatgatacaa      2400
     tctccgaatc tgaattttac ggttgggatt gttcagacga tggctggcca cgaggttttt      2460
     ggaacgacaa tgataacaat tggcttcgcg gactgtggga cgatgacgac gctgaagctg      2520
     gagctgcgat gccggaggcg gtgctggatg ctgtaccgga ggcgatgcca gcagctgtgc      2580
     cagaggtgtc gaatactccc gttcgtcgtt tacagagggt gacagctggc gttccaccgg      2640
     caagatatga cgaagaagta tatctggtga aggaaagtgt agcagaacca aaaacgtata      2700
     aggaagctgt gtccggtcct cagagtgctg aatggaaaat agcgatggca gaagaaatgc      2760
     agtcccatca ggaaaatgga acgtgggagc tagcggagct gccgccacac cggaaggcta      2820
     tcgggtcgaa atggatcttc aagtgtaagg cagatgaaga cggtcatttc gttcggtata      2880
     aagcacggct ggtggcgcag ggtttctgcc agaaattcgg gacggattac gacctggtgt      2940
     ttgtccccgt cgtaaagcag attactttcc ggacgatgct ggttctggcg agtaaaagga      3000
     agatgttaac gaagcacgtt gacataaaga cggcgtatct acatggtctt ctcaagaagg      3060
     agatttttat gcgccagcca cagggattcg aaagcgataa cccgaacgaa gtatgcaggc      3120
     tgcatcgcag catttacggg ctcaagcagg cagctcgtgt ctggaatacg aagatcgacg      3180
     acgtactgaa aactatgggt ttcatccaat caacggcgga cccatgtttg tacatacgcg      3240
     aaaaagcggg taagtccatc tttgttctca tttacgttga cgatgtgatc gtcatatgta      3300
     acacggagga agaattttct gaggtggtcc acgtcttgac actgaatttc acgatcagcg      3360
     tcatgggtaa cctaagattt tttctcggca tacgaattcg gcgtaacgat gggcgttact      3420
     gtatggacca acgagcttat ttggaacgag ttctggagcg tttcggcatg ctggatgcta      3480
     aaccgtccaa attcccgatg gatcccggct tcttaaaacg aaaggaggag aatggcagga      3540
     agttggattc gccaaaagcg tatcaaagtc tcataggagc tctgttgtac gctgcagaga      3600
     tcagcagacc cgatattgca atcgccacag ccattctggg caggagagtg caagatccat      3660
     cagaagcaga ttggaacgag gccaaacgga tactacgtta cctcaagggt acactggata      3720
     gtgtattgta ccttggaagc ggcggacaaa agctggagtg ttttgtggac gccgattggg      3780
     caggcgacga gagcgaccgc aaatccaact cggggttcgt gtttaagttc ggcggcgggc      3840
     tcatcggatg gggctgtcat aagcagaagt gtgtggcact atctagtacc gaggccgaat      3900
     atgtttccct tgccgagtgt ctacaggagg taaagtggat actgaaactg atggcggatg      3960
     ttggcgagca actggatggt ccagttctgg tcaacgaaga caatcaaagc tgcattgcgc      4020
     tgactaaagg agaccgagcc gaacgcaaag caaagcacat cgatacgaaa tttaatttcg      4080
     tggaggatat ggttcgggac ggcatcgtga aactgcagta ctgcccaacc gaacacatgc      4140
     aagctgattt gcttaccaaa ccgttgcaag cagtgaaact tcgacaactt agggaagcga      4200
     tcggaataaa accattcagt gttgaggagg ag                                    4232
//
ID   GYPSY51-I_AG repbase; DNA   ; ANG   ; 5176 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY51-I_AG is an internal portion of retrotransposon GYPSY51_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; AP protease; Gypsy clade; 4-bp TSD gag;
KW   RNase-H; CsRn1 lineage; GYPSY51-I_AG; GYPSY51-LTR_AG;
KW   integrase GYPSY51_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5176
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY51_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 94-94 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY51_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the CsRn1
CC   lineage of other organisms.
CC   GYPSY48_AG, GYPSY49_AG, GYPSY50_AG, GYPSY52_AG and GYPSY53_AG
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY51-I_AG consensus was reconstructed after multiple
CC   alignment of 3 copies.
CC   The consensus encodes the 325-aa GYPSY51_AG1p gag-like
CC   poliprotein (pos. 844-1818) and the 1110?aa GYPSY51_AG2p
CC   pol-like poliprotein (pos. 1822-5151).
CC   The sequence of the LTRs flanking GYPSY51-I_AG is deposited as
CC   GYPSY51-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           844..1818
FT                 /product="GYPSY51_AG1p"
FT                 /translation="MLHSPPVRDVSTPDGVTPSADPAASGSKSPHVPTPPV
FT                 PNTPRVPGPSACDAMFMPPESQIDTLNAMQLKPPEMDTTDIQTFFFALENW
FT                 FDAWNITTNQHIRRFNILRTRIPLRVLPELRPLLENIRQYATDRYEVAKRA
FT                 IIEHFEESQRSRLHRLLAEMNLGDRKPSQLLAEMRRAANGAMTDSMLVDLW
FT                 IGRLPPYVQSAVIATNTDTNDRAKVADSVMDSFALYHRTGPYQTIHEVRNE
FT                 DFERLSRHVTELGQRLDAVLSKLNERERARPRSRTRQRQPNQDAVTPSGHC
FT                 YYHTQYGQAARNCRAPCSFNNRRQGSNSATASD"
FT   CDS           1822..5151
FT                 /product="GYPSY51_AG2p"
FT                 /translation="RLTRGQPQQIHVLSTHSYRLVITDPKTNIKFLIDTGA
FT                 DVSVIPRQHSSVPSKPSTMKLFAANSTPIQVYGESLYTLDLGLRRSFLWNF
FT                 IIADVGTAIIGADFLQHFHLLVDLRKKCLVDALTNVRSTGVPSQNPSEPTV
FT                 KVCDSTSPIATLLKEFPGLTALSTPGTLLQSEVTHRIETTGQPTFARPRRL
FT                 PPEKYAAARKEFESLVQLGVCRPSNSSWASPLHMTKKADGTWRPCGDYRAL
FT                 NAKTVPDRYPLPFLQDFTMHLQDKIIFSKVDLHKAYHQIPIHPDDIAKTAI
FT                 TTPFGLYEFTTMPFGLRNAAQTFQRLIHDVLRGLEFVFPYIDDMIVASTSE
FT                 AEHHEHLRQLFERLEKHQLAINPAKCEFYRNEISFLGHLVNASGIRPLPDR
FT                 VQAISELPQPTTIMELKKFLAMINYYRRFLPHALETQGILLEMTPGNKKKD
FT                 RTPLTWSLEASEAFAQCKEQLKRATLLAHPVKNAELSLWTDASDFAAGAVL
FT                 HQRTNEDLQPLGFFSKRLEKAQQKYSTYDRELTAIYLAIRHFRYQLEGREF
FT                 CIYTDHKPLTFAFRQTHDNASPRRARQLDFIGQFSTDIRHIAGKDNVTADL
FT                 LSRIETVHATPTIDYERLAEEQERDPELSDILSGKIQTDLFLQKTPIPGSP
FT                 KSLYADCPGGIIRPYITRSFRTQLLHAVHDLSHPGARATARLITERFVWLN
FT                 ARKESQDFARNCLACQRAKVGRHVKSPLIPYPATTARFSHINVDIIGPFPI
FT                 SNGNRYCLTIIDRFTRWPEAIPISDITASTVVSALLFHWIARFGVPAHVTT
FT                 DQGRQFESSLFKELTKALGTKHIRTTAYHPQANGIIERWHRTLKAAITCKD
FT                 TARWSEHLPLILLGLRTTFKNDINASPAELVYGTTLTIPAEFFIAKPQNAL
FT                 ADQSDFAKTLEETMSSIRPQSTAWHTNRTPFVHSDLNKCTHVFIRDDTVRP
FT                 ALTTPYHGPYKVLTRNPKSFQILLRGQPTLVSIDRLKPAYGAEEEATPAPQ
FT                 CSWEGLTTNLLPPTTDHSETLPLPDVQANSDRRDATAASKPTSREQPVRNQ
FT                 TTPAPPSHPTTSRQTDRAAVDAPPPSILRRNDQTVSTGVTRSQRKVIIPLR
FT                 YR"
XX
SQ   Sequence 5176 BP; 1353 A; 1630 C; 1169 G; 1024 T; 0 other;
     actggtgacc ccgacgtgat cgcgtgcgcg agtgagtgag tggtaacctg acgaacatcg        60
     tgtccagccg gaaaaaacgt gtttccattg ttccacggtc cggaccgacg gcaacgttcc       120
     cccccatcat cgaggagcgg ccgaccacga aggaggcacc acgcaagcgc agccagcgaa       180
     aaaaaccccc gtgcacaaac cccgaaccca cgtgagtgca aatcgacacc gaaggtggcc       240
     gacagtgagg aacactgttc aggaacattt ttccccgacg gagcgaccga tcctagcgga       300
     aaagttcctt ttcggtgctg agcgatcgcc gaacattttg ctgacacacc ccgcgccgtg       360
     tcgcacaccc gccgatcatt ttggtacccg tacgtgtttg cgcacccgcc gatcataacc       420
     tcacacgtac cgccgagcgc gctccagacc cacgcggttt ttgtgtgtgc accgtgtgtg       480
     tgtgtgtgtg tgtgggtgaa tgtgcgcagg ccgacaccga gcggattgcg tcagaatttt       540
     gctcgagcta cgttcgtcat ttttttcgac cgtgcaccga agacgtcgtc agcgcacgca       600
     gccatcgttc tcttctcgcc gacaccaccg accgaacgcc accgaagatc atcgcccctc       660
     gtttctcaca ccaccggcgt catcgacgaa cgcagccaac gagcgactaa tcctaacacg       720
     atcgaccgcg tgtgcggatt tttcgtcgcc gaaggatcga cctagccaac ctcagctgga       780
     cttgcttgcg cccccgccac taaggtaaga tccacccttt tttaactaac cttagtcgta       840
     aggatgttgc acagtccgcc ggtccgcgac gtatcgactc ccgatggcgt aaccccgagt       900
     gccgatccag ccgcgagtgg atccaaatcg cctcacgtac caacaccgcc cgttccgaat       960
     accccgcgcg taccagggcc gtccgcctgc gacgccatgt ttatgccgcc cgaatcgcag      1020
     attgacactt tgaatgccat gcagctgaaa ccaccggaga tggacaccac tgacattcaa      1080
     acctttttct tcgcattgga aaactggttc gatgcgtgga atatcaccac gaaccaacat      1140
     attcgccgtt ttaacattct tagaacgcgt ataccgcttc gtgtccttcc tgagcttcgc      1200
     cccctgttgg agaacattcg acagtacgct acggaccgtt acgaggtagc aaagcgtgca      1260
     ataattgagc actttgaaga gtcgcaacga agccgcttgc atcgtctgct tgccgaaatg      1320
     aacctcgggg accgaaaacc atcgcagcta ttagcggaga tgcgccgcgc cgcaaatgga      1380
     gcaatgacgg actctatgct ggtagatttg tggatcggcc gtctcccgcc atacgtccag      1440
     tccgccgtta ttgccactaa cacggatacc aacgatcgag ctaaagtagc agactctgtt      1500
     atggattcgt tcgcgttata ccaccgaacg ggcccgtacc aaaccatcca cgaagtacgc      1560
     aacgaggact tcgaacgtct ttctcggcac gtaacggaat taggtcagcg cttggacgcc      1620
     gtactgagca agctcaacga acgagaacgc gcgcgaccac gctcacgtac ccggcaacgt      1680
     caaccgaacc aggatgcggt aacacccagc ggacactgct attaccacac gcagtacggg      1740
     caagcagcgc ggaactgtcg tgccccctgc tctttcaaca accgacggca gggtagtaac      1800
     tcagccactg cttccgattg acgcttaacc agaggccaac ctcaacagat acacgtactt      1860
     tcgacccata gctatcgtct cgtaataacc gatccaaaaa ctaacatcaa attcttaatc      1920
     gataccggtg cagacgtttc agtaatccct cgacaacaca gttccgtccc gagtaaaccc      1980
     tccaccatga agctgttcgc cgctaattct acaccaatcc aggtttacgg agagtcgctc      2040
     tatactctcg atttgggact tcgccgatct ttcctttgga acttcatcat cgcagacgtg      2100
     gggacagcga ttattggagc cgattttctc caacatttcc atctgctcgt ggacttgcgc      2160
     aaaaaatgtc ttgtcgacgc cttaacgaac gtacgttcta ccggagtgcc gagccaaaac      2220
     ccgtcggaac caaccgtaaa agtatgtgat tccacctcac cgatcgccac tctcctaaag      2280
     gaatttcccg ggttaactgc actatccact cctggcacct tactgcagtc cgaagtgaca      2340
     caccgaatcg aaacgacggg gcaaccaaca ttcgcaagac ctcgccgatt accacccgaa      2400
     aagtacgcag ctgcccgcaa agagttcgaa tcactcgtcc agctcggagt gtgccgcccc      2460
     tcgaatagca gctgggccag cccgctacat atgacaaaaa aggccgacgg cacctggcgc      2520
     ccttgtggtg attaccgcgc cctaaatgca aaaaccgtac ccgaccgtta tccactaccg      2580
     tttttacagg acttcacgat gcatttgcaa gacaagatca tattttccaa ggtcgatttg      2640
     cacaaagcat accaccagat accaattcat ccggatgata tagcgaagac agccatcacg      2700
     acaccctttg gactttacga gttcactacc atgcctttcg gattgaggaa cgcagcgcaa      2760
     acattccaac gccttatcca tgatgtccta cgaggactcg agtttgtttt cccgtatatc      2820
     gacgatatga tcgtagcatc aacgtccgag gcagaacacc acgaacactt acgccaactt      2880
     ttcgaacgat tggagaagca ccaactagcc atcaatccag ccaagtgcga gttctaccgg      2940
     aacgagattt cctttctggg ccatctggtc aacgcttctg gtattcgtcc tctccccgat      3000
     cgagtccaag ccatcagcga gctgccacag ccaacgacga ttatggagtt gaagaagttc      3060
     ctcgccatga taaactacta ccgacgtttt ctgccgcacg ccctggaaac gcaaggtata      3120
     cttctcgaga tgactccagg taacaaaaag aaggacagaa cgccattaac ctggtcgcta      3180
     gaagcttccg aagcattcgc ccaatgcaaa gagcaactga aacgtgcaac gttattggca      3240
     catcccgtga agaacgccga actttctcta tggaccgacg cttcagattt cgcagccgga      3300
     gccgtacttc accaacgcac caacgaagac ctgcaaccac taggcttctt ctcgaaacgt      3360
     ctcgaaaagg cacagcaaaa gtactcgacc tatgaccgag aacttaccgc catctatctc      3420
     gccatacgac acttccgata ccagctagag ggtcgggaat tctgtattta tacagaccac      3480
     aagcctctaa ccttcgcctt ccgacaaacg cacgacaatg cctcacctcg acgagcccgg      3540
     cagttagact tcattggcca gttttccacc gacatccgtc acatcgccgg aaaagacaac      3600
     gttacagccg atctgctctc ccgcatagag acagtgcacg cgacaccgac catcgattat      3660
     gagcgattag cagaagaaca agagcgcgac cctgaacttt ccgacattct cagtgggaaa      3720
     attcagacgg acttgttcct gcagaagaca ccaataccgg gaagccccaa gtcactctac      3780
     gccgactgcc ctggaggtat catcagaccg tacatcaccc gatcgtttcg aacacaactt      3840
     ctccacgccg tacatgatct cagtcatccc ggagcccgcg ccacagctag actaataaca      3900
     gagcgtttcg tgtggctcaa tgcaaggaag gaatcccagg acttcgctcg gaactgctta      3960
     gcctgccagc gcgctaaggt aggaaggcac gtcaaaagcc ccttgatacc gtaccctgca      4020
     acaacagcga ggttcagtca tatcaacgta gacatcattg gaccatttcc catcagtaac      4080
     ggtaaccgat actgccttac gataatcgac cgatttactc gctggccaga agcaataccg      4140
     atctcggata tcaccgcatc taccgtcgta tcagcactac tattccactg gatcgcccga      4200
     ttcggagttc cggcgcacgt aacaacggac caagggagac aattcgaatc ctccttgttc      4260
     aaagagttga cgaaagccct aggaacgaaa cacatccgta cgacagccta tcacccgcag      4320
     gcaaatggaa taatcgagag gtggcaccgc actcttaaag cagcaatcac ctgcaaagac      4380
     accgcaagat ggagcgaaca cctaccgcta atactgcttg ggctacgaac cacgttcaaa      4440
     aatgacatca acgcctcgcc agccgaactt gtgtatggaa cgacgttgac catcccggca      4500
     gaattcttca tcgcgaaacc gcaaaatgcc ctcgccgacc aatccgactt cgccaaaacg      4560
     ttagaggaga cgatgagcag cattcgacca cagagcaccg cttggcatac caaccgcaca      4620
     ccgttcgtgc attccgatct gaacaagtgt actcacgtgt tcatacgcga cgacaccgtc      4680
     cgacctgcac taactacacc ttaccacggt ccatataagg ttcttacacg caatcctaag      4740
     tcttttcaga tactcctacg tggacagcca acgctggttt cgatcgaccg cttaaaacca      4800
     gcgtatggcg cagaagagga agccaccccg gccccgcagt gctcgtggga agggctaacg      4860
     acaaacctgc tgccgccaac aaccgaccac tcggaaactc tgccgttacc ggacgtccag      4920
     gcaaattcgg accgcagaga cgccaccgca gcctccaaac cgacgtcgcg cgaacaacca      4980
     gtgcgtaatc agacgacacc cgcaccacca tcgcacccga cgacatcgag acaaaccgac      5040
     cgagccgccg tcgacgcccc accaccctcc atcctacgcc gcaacgacca gacggtatcg      5100
     accggcgtca ccaggtctca gcggaaggtc atcatacctc tacgttaccg gtgacaccgc      5160
     tctaggaggg gagtac                                                      5176
//
ID   QUETZAL     repbase; DNA   ; ANG   ; 1680 BP.
XX
AC   L76231;
XX
DT   21-AUG-1997 (Rel. 2.07, Created)
DT   21-AUG-1997 (Rel. 2.07, Last updated, Version 1)
XX
DE   Quetzal, a DNA transposon of the Tc1 superfamily.
XX
KW   Harbinger; DNA transposon; Interspersed Repeat; TIR; Quetzal;
KW   Tc1 superfamily.
XX
OS   Anopheles albimanus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1680
RA   Ke Z., Grossman L.G., Cornel J.A., Collins H.F.;
RT   "Quetzal: a transposon of the Tc1 family in the mosquito
RT   Anopheles albimanus.";
RL   Genetica (1996)In press.
XX
DR   GenBank; L76231; Positions       1    1680.
XX
CC   TA target-site duplication.
CC   The closest known element to the Quetzal is the Uhu transposon
CC   from D.heteroneura.
CC   It has 236 bp TIRs (position 1-236 and 1445-1680).
CC   The transposase is ecoded by the sequence 373-1398.
XX
SQ   Sequence 1680 BP; 561 A; 320 C; 355 G; 444 T; 0 other;
     cacttctcca caaaagtgaa tacacagcaa acagttttag gaataaatgc ctctagttgt        60
     gcatagaccg aattaaaaat atgggaaaat tatcaattat gctttgacct atttgcaatc       120
     gattgacgct tggtacgatg tccgtccgat gttgaagttc cgagaaattc tcggaaaact       180
     gctgggatgc ctcaaaatcg ttccacaaaa gtaagtacac agcacaggtg ttcgttttgt       240
     tttgaatcgt agataaactt ttaattgatg cgttaatgat cgattgggtg caatatgctc       300
     agtcgttcag atagtttcga ggtgaacagt ttttagcttc caaatcgact gcagtttacc       360
     ataattccaa aaatgaccag agaagaactt tctgtctcta aaagacaaga tattataaga       420
     ttgcacggcg ctcagggcaa aagctacaca gaaattgcaa tgttaacaaa cattaataga       480
     aatactgtcg ctagggtcat ccagcggtac aaatacgagg gccgtgtatc taatttacct       540
     agaaagggtc ggccctcggt gtgcactgat cgtatgcgac gggcgataaa acgattggtg       600
     gatgctgaac cagaaatcag tgctcaatct gtagctatag tacttaacga aaggcacggt       660
     attgccattt catgtgagac agtgcggcgg tacattcata aatttggcta caaggcttac       720
     aacaggcgca aaaaacctca gatcagccct atcaatcgga aacggcgatt agaatttgcg       780
     aaaaaatacg ttaaccaccc acccgagttt tggaaaaaag ttttatttac agacgagagt       840
     aaatttaaca ttttcgggtg ggatggcaca ataaaggttt ggcggccacc cggagaaggc       900
     ctgaacccta aatacacagc caagacggta aaacataacg gagggggtgt gctagtttgg       960
     gggtgtatgg cggcaaatgg tgttggaaat ttgcaagtta tagatggaat tatggaccaa      1020
     tatgtttata tcaacatttt aaagcaaaat ttaggaccaa gtttggaaaa attagggatg      1080
     tctcaagatt attggttcca acaagacaat gatccaaaac acacggcatt caattcacgg      1140
     ctatttttgt tgtacaacac tccccaccag ctaaaatcac cgccccaaag tcccgacttg      1200
     aacccaatag aacatgcttg ggaattactt gaacgaaaaa ttcgtcaaac acgaattaaa      1260
     aaccgtgtcg atctagaaaa caaattaaaa gaagcgtgga tcacaatttc tgaagattat      1320
     acgcaaaatt tggtaaattc aatgccacga aggttggcag aagttataaa aatgaaaggg      1380
     tatgctaccc gatattgaaa acgttacaaa atgtcgaagg acacgaaata aaaacgaaat      1440
     acccaacgaa cacctgcgct gtgtacttac ttttgtggaa cgattttgag gcatctcagc      1500
     agttttccaa gaatttctcg gaacttcaac atcggacggc atcgtaccaa gcgtcaatcg      1560
     attgcaaata ggtcaaagca taattgataa ttttcccata tttttaattc ggttctatgc      1620
     acaactagag gcatttattc ctaaaactgt ttgctgtgta ttcacttttg tggagaagtg      1680
//
ID   GYPSY71-LTR_AG repbase; DNA   ; ANG   ; 205 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY71-LTR_AG is an LTR of retrotransposon GYPSY71_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; Gypsy clade;
KW   MDG3 lineage; GYPSY71-I_AG; GYPSY71-LTR_AG; 4-bp TSD GYPSY71_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-205
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY71_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 182-182 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY71-LTR is a long terminal repeat of GYPSY71_AG (its
CC   internal portion is deposited as GYPSY71-I_AG).
XX
SQ   Sequence 205 BP; 62 A; 34 C; 64 G; 45 T; 0 other;
     tgtgaagtag ggaaaagaga tagcgatatc gtggcgagcg ccgagtgagc gaaggagggt        60
     atttaagcgg cgcgcgctgc tgggtcgaga ggtcagttga acgcgaaatg tcgaaggtga       120
     aggacgtgcg aattggagaa taaataaagt gaactaaacg aaagccaccc atcttcttct       180
     tttgatgttt aactgaattc tcaca                                             205
//
ID   TRANSIB2_AG repbase; DNA   ; ANG   ; 2542 BP.
XX
AC   .
XX
DT   29-JAN-2002 (Rel. 7, Created)
DT   29-JAN-2002 (Rel. 7, Last updated, Version 1)
XX
DE   TRANSIB2_AG is a TRANSIB-like DNA transposon - a partial
DE   consensus.
XX
KW   Transib; DNA transposon; Interspersed Repeat; transposase;
KW   TRANSIB superfamily; TRANSIB2_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-2542
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB2_AG.";
RL   Direct Submission to Repbase Update (27-2002).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB2_AG is a young Transib-like DNA transposon.
CC   Its copies are only ~1% divergent from the consensus sequence.
CC   The consensus is incomplete at its termini and encodes a 662-aa
CC   TRANSIB2_AGp transposase.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="TRANSIB2_AGp"
FT                 /translation="TFYYKDDFLQIQRYRKTIRIQKPTDYNVNKVLQYISS
FT                 VININEIEKQRLVGNLKYLYYRFRTLFAKSSRNMLRFENKNRPWLALELKV
FT                 SNVNLSDSSRGRPKKPFAELSIRNKRRFVANEQKSSVDIEQELYRVRLLAY
FT                 REKNCNLMAVIDKLLSHPENVFESIKNCGKSVSLEESLALFIDNRWSKAQY
FT                 INMYQKTKNMFPSYTALSNFKKTCSPCEDFINVSETKASVGLQAVLNHTAS
FT                 RIINMKKDKIIQNFDSENVSFKNINLLCSWGIDGSTGHSNYQQKFDGVNES
FT                 MVTDSELLVTAFSPIRLAQSENDGNIFWLNLLPQSTRFCRPLAIEYVKESK
FT                 EKVLESINFIKTEISNLIPFKIDLSETKYVIITYSFYMSMIDGKVLAYVTN
FT                 TSSMQCCCICGAAPNEMNSKDNLENGFLAREESLHYGISPLHCWMRFFECL
FT                 LHISYRLEFKQWKVTKNFKDIFTQRKKSIQQKIYEEFGLRVDEPRPMGANS
FT                 TTGNVCRRAFSDVTKLSRILEIDEQLISRXKNILIAINCSQPIKPHALSLY
FT                 CKDTYSIYLNNYSWFKMPSTVHRVLAHIGEVILRAPAPIGALGEEAAEGRH
FT                 KLYRQDREIHARKNSRINNLKDIFMQALYSSDPYISSISLDKRLQKTSKNQ
FT                 YPDEVKQFFPEFL"
XX
SQ   Sequence 2542 BP; 926 A; 397 C; 463 G; 756 T; 0 other;
     gaatgtcaac aaatgataat tagtaaatat tttaattatg aatgaacatg aacttcatta        60
     aatttatgaa ttatatacgt ttaaaatggt tatctaaaca ccaaaacaaa tatttgctgc       120
     aaatttattg attcattaac tgccgattta aactccataa tgattggaat cgggactgac       180
     attatgacag atcaaatgtc agactggtgt atcccacgag accccccccc cctccgaaga       240
     ggggaacaga aaccgccatg tttacagttt ggtatgtgca agcttatcta gtagtttgtt       300
     ggtgcataat ataaactttt tattataaag atgacttcct tcaaatacaa cgatatcgta       360
     aaacaattcg aatacaaaaa cctactgatt ataacgtcaa taaagtgcta cagtatatat       420
     caagtgtgat taacattaat gaaattgaaa aacaacgact agtgggcaat ttaaaatatc       480
     tttactatcg gtttcgtact ctttttgcca aaagctctag aaatatgtta cgttttgaga       540
     ataagaatag gccgtggctc gctttagaac ttaaggtatc caatgtaaat ttaagtgata       600
     gttctcgagg tagaccaaaa aaaccattcg ctgaactttc catacgaaat aagcgacgtt       660
     ttgttgctaa tgagcaaaaa agcagtgtag atatagaaca agagctgtat cgtgtccgtc       720
     ttttagcata tagggaaaag aattgcaatt tgatggccgt tattgataag ttactcagtc       780
     atccagaaaa tgtttttgag agcattaaga attgtggcaa aagtgtatct ctagaagaaa       840
     gtttagcgtt attcatagat aatagatggt caaaggcaca atacataaat atgtaccaaa       900
     aaacaaaaaa tatgttccct tcttacacgg ctttaagcaa ttttaagaaa acttgttcac       960
     catgtgaaga ctttattaat gttagtgaaa ccaaagccag cgtaggactg caagcagttt      1020
     tgaaccatac ggcatctaga attatcaaca tgaaaaaaga taaaattatt caaaattttg      1080
     atagtgaaaa cgtaagcttc aaaaacataa atttattatg ttcttgggga atcgacgggt      1140
     caactggtca cagtaattat cagcagaaat ttgacggggt gaacgaaagc atggtaacgg      1200
     acagtgaact gctagtaact gctttcagtc caataagact agcacaaagt gaaaatgatg      1260
     gaaatatttt ttggttaaat ttgctgccac agagcactag attttgcagg ccgttagcga      1320
     tagagtatgt aaaggaatct aaagaaaaag tattagaaag tattaacttc ataaaaaccg      1380
     aaatttcgaa tttgattcca ttcaaaattg atttgagtga aacaaaatat gtaattatta      1440
     catattcttt ttatatgagc atgatagatg gaaaagtatt ggcctatgta acaaatacaa      1500
     gttcgatgca atgttgttgt atttgtggag ctgctcctaa cgagatgaat agtaaggata      1560
     acttagaaaa cggattttta gctagggaag aatcgcttca ttacggaata tcacctttgc      1620
     attgttggat gcgctttttt gaatgcctat tacacatttc gtacagactt gaatttaagc      1680
     aatggaaagt aacaaaaaat ttcaaagata tatttactca gcgtaagaaa agcatccaac      1740
     agaagatata tgaagagttt ggtttgcgag tggatgaacc aaggcctatg ggtgctaaca      1800
     gcacaactgg aaatgtatgc cgtcgtgcat tttctgacgt gactaaactt agtcgtatat      1860
     tagaaattga tgaacaactt atcagtagat aaaaaaatat tttgattgcc atcaattgtt      1920
     cgcagccaat aaaaccgcac gccttaagtt tatactgcaa agacacatat tcaatttatt      1980
     taaacaatta cagttggttt aaaatgcctt caacagtgca ccgcgtactt gcacatattg      2040
     gagaagttat attacgagcc ccagcaccaa taggcgctct aggagaagaa gctgctgagg      2100
     gtcgacataa actgtataga caagatcgtg aaattcacgc gagaaaaaac tcaagaatca      2160
     ataatctaaa agatattttt atgcaagccc tttattcttc agatccctac attagttcca      2220
     tttccttaga taaacgcttg caaaaaacat caaaaaatca atatccagat gaagtaaaac      2280
     agttttttcc agagttttta taacactagt tggtctagtt ggcacatatt gagtatgcaa      2340
     atgatgtttt agagtgatat caatgaagga gaagaagaga atcaagaatt tcaaaatact      2400
     agcactacta aatactactg cacgacaatg ttgaagaatt atgaaagctt ttaaactatg      2460
     cagaactatt actattaatt taaagaccct gaagtacttg ttgaattgtt gaattgagaa      2520
     agtctaccga tgttgtgcat tg                                               2542
//
ID   COPIA1-I_AG repbase; DNA   ; ANG   ; 4129 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   COPIA1-I_AG is an internal portion of the COPIA1_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; reverse transcriptase;
KW   5-bp TSD; Copia clade; COPIA1-I_AG; COPIA1-LTR_AG; COPIA1_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4129
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "COPIA1_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 49-49 (2003).
XX
CC   [1] (Consensus)
XX
CC   COPIA1_AG is a young family of copia-like LTR retrotransposons.
CC   COPIA1-I_AG, an internal portion of COPIA1_AG is flanked by 99%
CC   identical COPIA1-LTR_AG LTRs. The COPIA1-I_AG consensus sequence
CC   was reconstructed based on multiple alignment of 4 copies.
CC   The consensus sequence encodes the 1323-aa COPIA1-I_AGp protein
CC   (positions 151-4119).
CC   MSESHVTIEKLNDQNYAIWKFKMELLLAREKVLTVVKDSKPASPDAAWIANDERARALIGLSLDDSQLIH
CC   VMQTSSSKDMWDALKGYHERSSLSSKIHVMRKMFATKMTEGGDISNHLKELCSLRLRLIALGEEMKDPSF
CC   VALMLSSLPKSFDGLIVALESRPDEDLTVDYVKGKLLDEGRRRADGADEDKALLSGGKNxTKFWKDRKLT
CC   TNKEKQCHYCKKNGHIRKDCRKWAADKRSKLDGESVNVANEDNREEVCLFIGExNETGPWCFDSGATSHM
CC   TNDTSILKLIDKSKQSSISLANGDSIKSAGVGxCKLFSMDGNGKRKKVSLDxVCHVPSLTTNLLSVSKIT
CC   DNGFExxFDRxGCRVLKGKQVLLIGERKGGLYYLKQTEQAMLVDKNHEASCIHLWHRRFGHRDIEAIMKI
CC   ARNNLGSGLNINRCHVKSICGSCCEGKMSRDPFPNSSSSRTSGVGELIHTDLGGPFEVSTARGSRYFMTM
CC   VDDFSRYTIIYLxQNKCETENRIREYCxMMKTQFGHYPKVIRSDGGGEYRSNSLKEFFVDHGIVHQQTAP
CC   YSPQQNGVAERKNRYLVEMMRCMLAESNMDKVFWGEAITTANYLQNRLPSSLLESTPYEMWHGKNPSYEH
CC   LRVFGSEAFVHIPKEKRRKLDKKAEKLVFVGYADNQKAYRFVNLETKTITISRDAKFLEQCEIEKIGTKP
CC   KPTTSGGVVVLPLGSTPSLCRAEETTTRENIVQMEASAESSCIRESNMNDTVDxLDVTPYNSASDGELSD
CC   EPGAIEMHQSVRRSxRTTKGIAPVRFREESYMAGSSEQNEEPRNLKEVFVCAAREKWISAMENELKSHEE
CC   NGTWDALVELPAGRKVVGCRWIFKLKRNAAGQVIKHKARLVAQGYSQQFGEDYDQVFAPVTSHTTFRLML
CC   AIASKTQMKLRHLDIKTAYLYGDLDQELFMRQPPGYExKGKEHLVCRLKKSIYGLKQSARCWNQKLHGVL
CC   LEIGFQQSAADQCLYIKTEDGKRVYILVYVDDMIVGCVDETLIDSVYHALTEHFEMTDLGPVSYFLGMEV
CC   KxEKGNYSVSLEGYIEKLIRKFGLSEAKTAKTPMDEGFLKQQDSSSILKDSTQYRSLVGALLYISVCTRP
CC   DIAVSTGILGRNVSNPTESCWVAAKRVVRYLKATKHFKLTFNKAGSDLIGYSDADWAGDTITRKSTSGYV
CC   FFYASGAVSWASRKQTSIALSSMESEYISLSEATQEQMWLTRLMKDLGEHIENPVKIFEDNQSCICFVNS
CC   DRTNRRSKHIETKEHFVKQQCESRKMMLEYCPTEEMVADILTKPLGATKQRKFTEMLGLHGTR.
XX
SQ   Sequence 4129 BP; 1357 A; 731 C; 960 G; 1064 T; 17 other;
     ggttatgggc ccagaagtac tgtcgaacaa gtgttaagtt tgtgttatat tgaagtaata        60
     atctatcgaa aattttaatc ttgaagaaat actgaaaact tatcgaaaat tttaatcttg       120
     aagaaacact gaaaacttaa atctagaaac atgtctgaat cacacgtcac cattgaaaaa       180
     ttaaacgatc aaaattacgc aatatggaaa ttcaagatgg aacttttgtt agcaagggaa       240
     aaggtgctga ctgtcgtgaa agattcgaaa ccagcaagtc ccgacgctgc atggattgcg       300
     aatgatgaac gtgctagggc actgatcggt ctgtcgttgg acgacagcca actcatccat       360
     gtcatgcaaa cgagttcatc gaaagatatg tgggatgccc taaaaggcta tcatgagcgt       420
     tcatctttgt ccagcaaaat acacgtcatg cgaaaaatgt ttgccacaaa aatgactgaa       480
     ggtggagaca tttctaacca tctcaaagaa ctatgttctc tgcgacttcg tttaattgcg       540
     ctgggagaag aaatgaaaga tccatccttt gtcgcgttaa tgttgtccag tttgccaaaa       600
     tcctttgatg gtttgatcgt ggctttggaa agtaggcctg atgaagatct tacggtggat       660
     tatgtaaaag gcaaattgtt ggatgaagga agacgtcgag cagatggtgc agatgaagat       720
     aaagcgttac tatctggagg aaagaayawc acgaaatttt ggaaggacag gaaactaaca       780
     accaacaagg aaaaacagtg ccattattgc aagaagaatg ggcacataag aaaagactgt       840
     agaaaatggg ctgcagacaa aagaagtaaa ctagatggtg aaagcgtcaa cgttgctaat       900
     gaagacaatc gagaggaagt atgtttgttc attggagaar gaaacgaaac tggaccatgg       960
     tgtttcgatt ctggtgcaac ttctcatatg acgaacgata cgtctatttt gaaattaata      1020
     gataaatcga agcaatcctc gatttcatta gcgaacggag attccatcaa gtcagctggt      1080
     gtcggaarct gcaaattgtt ttccatggat ggaaacggaa aacgcaagaa agtttccttg      1140
     gacaakgtgt gtcatgtacc atctttgacg acaaacctat tatctgtaag taaaattacc      1200
     gataatggat tcgaartgyt tttcgatagg twtggatgtc gtgtcctgaa aggaaaacaa      1260
     gtattgctga ttggtgaacg taaaggtggt ctgtattatc taaaacagac tgaacaagcc      1320
     atgttggtag ataaaaacca tgaagcttcc tgtatacacc tatggcatcg tcgatttggc      1380
     catcgtgaca tagaagccat aatgaagatt gcgcggaaca atttgggaag cggcttgaac      1440
     atcaaccgat gtcatgtgaa atccatttgt ggatcatgct gtgaagggaa gatgagccgt      1500
     gatcctttcc caaattcttc atcttcaagg acatctggtg ttggcgaact gatacatacg      1560
     gacttgggag gaccgtttga agtatcaaca gcccgaggaa gccgatattt tatgactatg      1620
     gttgatgatt ttagtcggta tacaattatc tacctgktgc aaaacaagtg tgagacagaa      1680
     aaccggatca gagaatattg crccatgatg aaaacacagt ttggacacta tccgaaagtc      1740
     atcagatcgg atggtggtgg tgaatacagg agcaattctt taaaggaatt ttttgtagat      1800
     cacggsatcg tgcatcaaca aactgcccca tattctccac aacaaaacgg cgtggctgaa      1860
     cgtaagaacc ggtacctcgt tgaaatgatg agatgcatgt tggcagaatc gaacatggac      1920
     aaggtgttct ggggtgaagc gatcaccact gccaattatt tacaaaatcg cttgccatcc      1980
     tccttactgg aatcgacacc ttacgaaatg tggcacggaa agaatccttc gtatgaacat      2040
     cttcgagtat ttggttcaga agctttcgta cacattccta aagaaaaacg gcgtaagttg      2100
     gataaaaagg ctgaaaagtt ggtattcgtc ggatacgcgg acaatcagaa ggcctatcga      2160
     ttcgtaaacc tggagacgaa aacaattacc attagtcgtg acgcaaaatt tttagaacaa      2220
     tgcgagattg agaaaattgg aacaaaaccg aaaccaacga catcaggagg agtagtggta      2280
     ctgccacttg gatcaactcc ttcattatgt cgcgcagaag aaactaccac gagagaaaac      2340
     atcgttcaaa tggaggcttc tgctgaatcc tcctgcatta gggaatcgaa catgaacgat      2400
     acygtagatg awcttgatgt tacaccatac aacagtgcat ctgatggcga actatcagat      2460
     gaaccagggg ctattgaaat gcatcaaagt gtacgtaggt ccaygcgaac aacaaaaggc      2520
     atcgcacctg ttcgattcag ggaggaaagt tatatggcgg gatcttctga acaaaacgaa      2580
     gaacccagaa atttgaaaga agttttygtc tgtgcagcgc gcgaaaaatg gatatcggca      2640
     atggaaaatg aactgaaatc acacgaagaa aacggaacat gggatgcatt ggtagagcta      2700
     cctgctggca gaaaggttgt tggttgccgc tggattttta agttgaaaag aaatgcagct      2760
     ggacaagtaa tcaaacacaa agctcgtcta gtggcgcaag gctattccca gcaatttggc      2820
     gaagactatg atcaagtatt tgctccggtc acaagccata caacatttcg tttgatgctc      2880
     gctatagctt ctaaaacaca gatgaaatta cggcatttag atattaaaac ggcctattta      2940
     tatggtgatc tagatcagga gctttttatg cgacaaccac ctggatacga gayaaaaggc      3000
     aaagagcatt tggtttgtcg attgaaaaag agtatttatg gtctgaaaca atcagctcga      3060
     tgttggaacc agaaactgca cggtgttctg ctagagattg gcttccaaca aagtgctgct      3120
     gatcagtgtc tgtacattaa aactgaagat ggaaaaagag tctacatttt agtgtacgtg      3180
     gatgatatga tagtcggttg tgtggacgag actctcattg attctgtgta tcacgcttta      3240
     accgaacatt tcgaaatgac ggacctggga ccagttagtt actttctggg aatggaggtt      3300
     aaatrtgaaa aaggtaacta cagcgttagc ctcgaaggtt acattgaaaa attgattcgt      3360
     aagttcggat tgagcgaagc aaaaactgcg aaaacaccga tggatgaagg atttttgaag      3420
     cagcaagact caagctctat tttgaaagac tctactcaat atagaagtct agttggtgct      3480
     cttctataca tatcggtgtg tacgcgacca gatattgctg taagtacggg aatacttggt      3540
     cgtaatgtta gtaatcctac tgaatcatgc tgggttgcgg ctaagcgtgt tgtaagatat      3600
     ttaaaagcaa ctaaacattt taagctcact ttcaacaaag ctggtagcga tttgattggt      3660
     tattctgatg ctgactgggc aggtgatact ataacaagaa aatcgacttc cggatatgtg      3720
     tttttctatg ctagtggagc tgtgtcatgg gccagtcgca aacaaaccag cattgcatta      3780
     tcatcgatgg aatcagaata tatttcctta agtgaagcta ctcaagaaca aatgtggctt      3840
     actcgattga tgaaagactt aggagaacat attgaaaacc ccgttaaaat ctttgaggat      3900
     aaccagagtt gcatttgttt cgtcaactct gatagaacca atcgtcgatc gaaacacatt      3960
     gaaacaaaag aacactttgt caaacaacag tgtgaatcta gaaaaatgat gcttgaatat      4020
     tgtcccacgg aagagatggt tgcggacatt ctaacgaaac cactaggagc aacaaaacaa      4080
     agaaaattta cggagatgtt agggcttcat ggcacacgtt gaggaggag                  4129
//
ID   GYPSY46-I_AG repbase; DNA   ; ANG   ; 6534 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY46-I_AG is an internal portion of retrotransposon GYPSY46_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; AP protease; Gypsy clade; 4-bp TSD gag;
KW   RNase-H; GYPSY lineage; GYPSY46-I_AG; GYPSY46-LTR_AG;
KW   integrase GYPSY46_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-6534
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY46_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 84-84 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY46_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its Reverse
CC   Transcriptase,
CC   RNase and Integrase is
CC   phylogenetically grouped with representatives of the GYPSY
CC   lineage of other organisms.
CC   GYPSY39_AG, GYPSY40_AG, GYPSY41_AG, GYPSY42_AG, GYPSY43_AG,
CC   GYPSY44_AG,
CC   GYPSY45_AG and GYPSY47_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY46-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies.
CC   The consensus encodes the 434-aa GYPSY46_AG1p gag-like
CC   poliprotein (pos. 507-1808), the 1061?aa GYPSY46_AG2p
CC   pol-like poliprotein (pos. 1757-4939) and the 515-aa GYPSY46_AG3p
CC   env-like poliprotein (pos. 4962-6506).
CC   The sequence of the LTRs flanking GYPSY46-I_AG is deposited as
CC   GYPSY46-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           507..1808
FT                 /product="GYPSY46_AG1p"
FT                 /translation="MEALAGRIAALEARFSESNVTDDFQDPPLFFTKQDGS
FT                 AVDPESFEKIPGVVKDLPIFCGDPSELNSWINDVDGIIRLYQTISSHSLEK
FT                 QNKFHMICKFIRRKIRGEANDALVASNVGINWNMMRKTLITYYGEKRDLET
FT                 LDFQLMSVYQKGRTLEVYYDEVNRLLSLIANQIQTDDRFNHPEASKAMIGT
FT                 YNKKAIDAFIRGLDGDVYKFIRNYEPTSLAAAYSYCISFQNLECRKMLTKP
FT                 KHFNTPPSAPRNQIPLPTPHLPPRVFQHQQRPMTANNVRPHFAHHPPIQNF
FT                 AGNFTQRPVWNQPNQQRPIFQRTNFNQPNQMKNFTQQRNNFRQNGPEPMEI
FT                 DPSIRSHQVNYANRPNSSNIRPLKRQRAFNIEAVPRREIEPTSYEDNLYDD
FT                 DVESQASYERYMRNVEKQEKLNENSHYDEISREAELNFLG"
XX
SQ   Sequence 6534 BP; 2504 A; 1266 C; 1070 G; 1694 T; 0 other;
     ggcgcccgaa tagggacctc tagtgaagtg aaaatcaagt gacgagtagt gatcgcgaaa        60
     gagcgtaatc acaccgtgct tagaacatct cccgatcgca gattgcagcc gtgtgtatga       120
     gcacctaagt agccggtagc agccaataac tcgttgccgg aggaaaggga caacgccgac       180
     acaccgagaa ggaaaaattc accggaggcc cgagcaacag aaaccaaccc cgtcagagga       240
     ggcgaagcaa ccagccccgt aagaagggtg aagcatgaat ttattaatgt aagtaaaact       300
     ttcaatcata gtaagtataa acatttatta aagcgacaaa aaatattaaa acattataat       360
     cagtgttaaa gtgagtgatt agtgagtgaa aagaaaatca ttatcacaaa agttaagtca       420
     aactggagga attagttcaa tcattacgac aattctcagt cacagtaaaa tctatagata       480
     acgaagaaaa actaacaaac aaagatatgg aggcactagc tggcagaatt gcagctttag       540
     aagcacgttt tagtgaaagc aatgttacag atgattttca agacccacca ctttttttta       600
     caaaacaaga tggtagtgca gtagatcccg aatctttcga aaaaatccct ggagttgtaa       660
     aagatctccc aattttctgc ggtgacccaa gtgaacttaa tagctggatc aatgacgtag       720
     atgggataat ccgactatac caaactatat ctagccatag tttggaaaag caaaataaat       780
     tccacatgat ttgtaaattc atacgtagaa aaattagagg tgaagccaac gatgctttag       840
     tagcatctaa cgtagggata aattggaata tgatgagaaa aactctcata acttattatg       900
     gagagaagcg agatttggaa actctcgatt ttcaacttat gagtgtctac caaaaaggtc       960
     gaactttgga agtttattac gacgaggtta atagacttct ttcacttatt gcaaatcaga      1020
     tacagacaga cgatagattt aaccatccgg aagcttcgaa agctatgatt ggaacataca      1080
     acaagaaagc gatcgatgct tttatcagag gtctcgatgg ggacgtttat aaatttattc      1140
     gtaactacga accaacatcc ttagcagcag cctacagcta ttgcatttct tttcaaaacc      1200
     tagagtgccg taagatgcta acaaaaccaa aacattttaa cacacccccg tcagccccca      1260
     gaaaccaaat accattgccc acacctcatc taccaccaag agtgttccaa caccaacaaa      1320
     gaccaatgac agcgaacaac gtaagacctc attttgcgca ccacccaccg attcaaaatt      1380
     ttgcaggaaa ttttacacaa cgtcctgttt ggaatcaacc aaatcagcaa agaccaattt      1440
     ttcagcgcac aaattttaat caaccaaatc agatgaaaaa ttttacacag cagagaaaca      1500
     attttcgcca aaatggacct gaaccgatgg aaatagaccc atcaattagg tcacatcaag      1560
     ttaattatgc gaacaggccg aactcctcaa acattcgtcc attgaaaaga caaagagctt      1620
     tcaatattga agcagttccg cgacgtgaaa tagaaccgac ttcatatgaa gataatctct      1680
     acgatgatga tgtcgaaagt caggcgtcat acgaacgata tatgagaaat gtagaaaagc      1740
     aagaaaaact aaatgaaaat tctcattacg acgaaatttc tcgcgaagca gaattaaatt      1800
     ttttaggtta aaatcagctt taccatattt tatataccat ggtaaggcag gtcaacaaat      1860
     taaaattcta atcgacactg gatctaataa aaatttcatc aaccctttac atgcgaaaat      1920
     ttctcacgac gttataaaac cattttttgt atcatctgtg ggaggagatt tactcatcac      1980
     aaaatattca caagctcaaa tatttgcccc ttattccgat gtaaatgtca aattttatca      2040
     tttgcaggga ctaaaatcat ttgacgccat aataggttat gataccatca aagaaatggg      2100
     agcatttgta gacgctaaaa gagacaatct agttcttgaa aattttataa tacctctctc      2160
     acttcatcca ttacaggaag ttaacagaat tgaaataaga gacacacatc ttaaccacca      2220
     agaaaaagaa aaattacatt tatttcttaa caagtttcaa gatttattcc agccacccga      2280
     cgaaaagttg ccctttacaa caaaggtaga agcaaccata gccacgaatg atacggaacc      2340
     aatttactgt aagtcatacc catacccttt gtccctcaaa caggaagtgg aaacacagat      2400
     aaaaaaatta ttaaataatg gtataattcg accatctagg tcaccatata attcacctgt      2460
     gtggatagtt cccaaaaagg ttgacgcatc taacgaaaaa aaatatcgac ttgtgatcga      2520
     ttacagaaaa ataaacctga aaactaaaag cgatagatat cccattcccg atacttcaac      2580
     agtacttgcc aatctaggaa ataataaata ttttacaaca ctcgatctag catcgggatt      2640
     tcaccagatt cgtttagcag aaaaagatat cgaaaaaacc gccttttcca tcaataatgg      2700
     aaaatacgaa tttttaagat tacctttcgg tctgaaaaat gcaccttcga tttttcagag      2760
     agtcatggac gatgttctta gagaacatat tggaaaaatt tgtcacgtat acatagacga      2820
     tataatagtc tttggaaaaa cattcgacga acatctgaaa aacttggaaa ttgttttgaa      2880
     tacattacga gaagccaatt ttaaaataca gccagacaaa tcagagtttt taagaacaga      2940
     agttgaattc ttaggattca ttgtttcaga atatggcttg aaaccaaatg agaaaaagat      3000
     agaaagtatc ttaaaatacc ccgaacctca aactattcga gaacttagat catttttagg      3060
     actgtctgga tattacagaa gatttgttaa aaattatgca gctttagcaa aacctttaac      3120
     aaaactttta agaggggagg atggccaagg ccactgcaaa attacaaaaa atcaatctaa      3180
     aaattttccg ataaaattag atgatgatgc caaacgcgct ttcaaaactc ttaaggaagt      3240
     tttatcatcc gatgatgttt tagcataccc cgattttgat catgatttta ttttaactac      3300
     cgacgcttct gacaaagcaa tcggagctgt tctttcccag aacgttaatg gtgttgaaaa      3360
     accaataaca ttcatatcta gaacactatc aaaaacagaa gagaattatg ctacaaacga      3420
     aaaagaaatg cttgctatag tttgggcttt acattctcta cgtaattaca tttacggtgc      3480
     aaaaataata atattaacag atcaccaacc tttaacatat gcaatgtcac caaaaaataa      3540
     caatgcaaaa ttaaagcgat ggaaagcatt catagaggaa cataactatg agctaagtta      3600
     caaacctgga aaaaccaacg tggtagctga tgctctttca cgcatacaaa ttaactcact      3660
     aactcctaca caacactctg ccgaagaaga tgatctttct tttatccctt ctaccgaagc      3720
     tccaattaat gttttccgaa accaattaat ttttcaaaaa ggtactatta gttcctacga      3780
     gtttgtaaac ccctttccta agtttaaaag gcacactttc atagaaccac aattttcaat      3840
     cgattttata aaagacaaac ttaagagatt catgatacct ggtataataa atggcatatt      3900
     cactgatgag ccaactatgg ggatcattca agaaaccttt aaaaatctat tcaatatatc      3960
     aaccatgaaa gcaagatttt cacaaactca agttcaagac atttgtgatc aagaacaaca      4020
     gatagaagaa attcgtaaaa tacataactt tgctcataga aacgctaagg aaaattcatt      4080
     acaagctata aaaaaatttt atttcccttc catgagaaac aagatagaac aatatgttaa      4140
     aaactgcgaa acttgcaaag tagaaaaata cgaaagaaga ccccctgaat acataccagt      4200
     taaaacacca atcccaaaat atccaggaga aattgttcat gttgatatat ttgcgtataa      4260
     tgcaaatttt ttattcatct cgtcaatgga caaattttcg aaatatttga aattaaaacc      4320
     aattaaatca aaatccatag cagacgttaa ggaagtactg ctacaattat tatacgattg      4380
     gaatttgcct agacaaatta tatttgataa cgaatgtaca tttgtatcga acgtcataga      4440
     gcagtccata ctaaatttag gtgtatcaat ttttaagaca ccagtgaata gatcagagtc      4500
     aaatggacaa gtggaacgtt gtcactccac gatcagagaa atcgcaagat gtacaaaagg      4560
     tttgaatcca gacatgagct taattacctt aatacaacaa gccgtgtata agtataataa      4620
     tactattcat tcttttacaa aagagactcc cagaaaagta tatattggag agcaatcaga      4680
     agaactttca tttagagata gatcaaaatt aaaagaaaaa attgagagta aaattataaa      4740
     aatatttgaa gaaaaaaatg aaaagattaa agatgataag taccaagatt acgaaccgaa      4800
     tcaatttgcg tatgaaaaaa ataaaactat gaataagcgt gacagtcgtt ataagacagt      4860
     ggtagttaag gaaaatcatc caacgtatat aatagattcg aacaatcgaa aaatccacaa      4920
     aataaattta agaaaaaatt aatgatataa ttatgattta attaattttc tattacagaa      4980
     tcgcgttttt cacactatat ggtgttctac aagctagcat aaacattttc gacttaacaa      5040
     acaacccatt ggctattgtt ccgttaggac aagcaaaaat taggatcgga tacttgagga      5100
     cgattcatcc aattgatctt accgagctag aagagataat ttctcgagtt tttgaaaata      5160
     gcacaaacag tacaggaaaa tccccattgc aaagtttaat taatttgaag ctcgaaaaac      5220
     ttaacgccac aatttctaag attaggccac gtagacttcg aacgaaaaga tggaacagta      5280
     taggtaccgc ctggaagtgg atagctggca gtcccgacgc agaagatcta acgataatca      5340
     acaccaccct gaattcgctc atcctacaaa acaacgagca gctattaatc aataatggtc      5400
     tcagcagaag attccaagaa acaaccaata ttgctaatca tgttatcgac cttcagaata      5460
     ggatccaaag ggaacatcaa actgagatac aacagatcat taagatagca aacctagacg      5520
     cattacaagc ccatataaaa acactccaag aagccatact agccgctaag catgggatac      5580
     cgaatagcga gctactatca atagaagact taaacaccgt tgcagaattt ctggcacaaa      5640
     atggcattta ctatacatca gttgaagaaa tgttaacaca agccacagca caagttacca      5700
     tgaattcaac acacgtgata tttatgctaa agtttccacg tctatcctat gaaacttatg      5760
     agtacaacta tatcgactct atcatacaaa atgataagag aatcttaatc aagcataact      5820
     acataatccg gaatctaacc catatgttcg aattaccgca gccctgtatc gatcagagca      5880
     gccaccagct ttgcgaaagt aaagatctgg aagagccttc acgctgcata cgacaactcg      5940
     tacaagggga gcatacagaa tgtatgtacg aaaaggtgta ttcaacggga ttagttaaac      6000
     acattaacaa tgcgaatatt ctattgaatg atgccactgc cgaaatttca tccaactgca      6060
     gcaatataaa ccacattctt aatggatcat atctcataca atttcacaac tgcaatatct      6120
     ttattaacgg agaactcttt cccagcaccg aagtttcgat aaccggtaaa ccatatatat      6180
     caacccttgg cctcatcgct aaagaagacg gcatcagaga cgaaccttca attgaacatc      6240
     ttcgaaacat aacattgcag cacagagaga aactacatac catcagcctg gttaataatt      6300
     ccctcacatg gaaacttcat atctttgggt caattgggct aacgacaatt gttctgataa      6360
     caatagcaat tttatatttc attaccagta taagaagaac gaaaataagc ctcaacattc      6420
     caacgaacaa caccaaccga caggatgtcc accacataga aaccttcgtg aaaaaaccca      6480
     caacattcca tgctctcggc agactttgag ggcaaagtca tctaagaagg gagg            6534
//
ID   CR1-5_AG    repbase; DNA   ; ANG   ; 4525 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   CR1-5_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   Non-LTR retrotransposon; reverse transcriptase; CR1 clade;
KW   AP endonuclease; DNA/RNA-binding; PHD finger; CR1-5_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4525
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-5_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 16-16 (2003).
XX
CC   [1] (Consensus)
XX
CC   CR1-5_AG is a young family of CR1-like non-LTR retrotransposons.
CC   The CR1-5_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~50 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-5_AG occurred less than 1 million years ago.
CC   The 3' terminus of CR1-5_AG is composed of the ATAAAC
CC   microsatellite.
CC   CR1-5_AG encodes two protein sequences: a 378-aa CR1-5_AG-ORF1p
CC   (positions 228-1361) and 968-aa CR1-5_AG-ORF2p (positions
CC   1492-4395). CR1-5_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (aa positions 5-60). CR1-5_AG-ORF2p is composed
CC   of
CC   the AP endonuclease (aa positions 1-250) and reverse
CC   transcriptase
CC   (aa positions 520-750) domains.
XX
SQ   Sequence 4525 BP; 1158 A; 1175 C; 947 G; 1245 T; 0 other;
     tcagctttga cagttgtcaa catagcgtgt ctactgctat cgctccgcat ttatccgcta        60
     ttttattggt gtaatctggt tttgctataa tcaacacaag ttttagtgtg tccataagtg       120
     tagtctcgtg accctgccat cgtgttcctg acgaaaacca ccgtgttcgc gatatatttg       180
     gcttttattt gtggctcctt cgacgttcat ctgcagcggc atctaaaatg gaggatgtgt       240
     gttatgcatg ttctgaagca ctgggcccgg ttgaagggtc aattacgtgc ctatattgtg       300
     agggtacata ccatctggcg tgcactaagg tgcctatatc ggtcatcgac gaagtgaaac       360
     ggatggcttc cctgcactgg agttgcattg ggtgtactaa cgccatcggg aatccgcgta       420
     gcaaggcgat caagggcatg ggtatgcagg ttgggtttca ggcagccctc acagctgctg       480
     ttgatgccat gaaggctagc ttggtcccac cggtaataca ggagattcgg gatggctttg       540
     ccggaatcgc cacggcccat tcggcatcct tgcaacatag caatcaattg ctcccagatg       600
     cactaccaaa cggaaaaaga cgaagattat ttcgtgatgc agttgcatcc tcagatgccg       660
     tgtttgttga cagtgcagca atctcaaacg tcacaaatac aaacaacact caccggatcg       720
     atcgtccttc actaccacca ataatcacag gtactaatac aacctccgct tcaataccaa       780
     ctgtttcaca gacaccaaga accgattatt tatggctgca tctttcaagg ttggctgcgt       840
     ccgtcaccat agagcaagtt gtctcgttgg tgtgtttgca gttggacact gcagacgcaa       900
     ttgcttttag tctgctaaaa gcaggaacgg ttcctagccc attgagtgct gtatcgttca       960
     aggtcagaat ccctgctgcc cttcgtagta aggcacttaa cgcagcctcc tggccggtcg      1020
     ggctcggtgt gcgtgagttc atctcgctcc cgccgcgatc tctacattca cgaacacaac      1080
     acacgaacac ttacacaccg ataccgcaac aaccccgtac tcagcagaca ccggcaccac      1140
     tacagcctcg cactcaacac tcaccggcac cacagcagcc ttgtacccaa cacaataatc      1200
     cccacaataa tccatactca cctgcacata tccatgaacc cgcacgaaca caaaccgaac      1260
     aatcaccaac cgatatgaac tgcactctcc cttcacccac tcttccgtcc acgtcacgtt      1320
     caaaaacact tcaaactaca ctggttcaat tttttccgaa gtaaccgcac tacagcagcg      1380
     cacccatatt ttgcgcatac ggctcgagca aatccttcga caacaaacac aatacactca      1440
     ccttctacga taagctcgct caattgcaac accacagcgc ctactaacac tatgcaacaa      1500
     gcacccactg atcgagcggc ttgtatcact gtgtactatc agaatgtgcg tggcctgcgt      1560
     tctaaagccg atgagttccg tttgtcggtt cttgagacgg aatacgatgt attggtactc      1620
     actgaaactt ggctcgatcc ctgtattccc accgctctcc ttctaggaga tgagtatcgt      1680
     gtttaccgat gcgaccggga tgccactaac agctctcact ctcgtggggg tggtgtttta      1740
     attgcatgca acgtttctct tctctcttat gtgcttccta cgttgccgca actgttagaa      1800
     ctcacttgcg tatgtattca gttatgcgac caccgtttgt ttattgccgc tgcctacctg      1860
     cctcctaacc atagcatgaa tgaggagaaa ataagtgcat tgatcgactt cgttgctaat      1920
     atctgcacta ctcttggtcc gagagacagg ttcatgctta ttggtgattt caaccagtct      1980
     acgctatcct ggacatcggc gtcagaggaa aatggagctg cttttgattt ctatgagcct      2040
     catgcacgct ccgcgcgcag tgtccagttc gttgatggtt tgcatcagag tggactatac      2100
     cagcttaact tcaatactaa ctcatcgggg cgaatacttg acctaattta cgcaaattgg      2160
     ccagctgcat ctacatgttc ttcaatacgt gtctgtgaat atccccttac tactatcgac      2220
     gaacaccacc ctccgcttga ctttgatttg gacaacgtag ccccagttac gatcgctaca      2280
     gccattgatg ctgataaaag gctgaattat gctcgtgttg accttccaaa attggagcga      2340
     ttgattttat cttttgacaa ttcttttaac tgttcggact attcaaccat tgacgatgcc      2400
     acagaggctt tttgtgagtt catgagatct gctatatgtg aatgcactcc tgttaaaatt      2460
     cctcgtcgtg gaccaccatg ggctgatcgc acactaaatg cattaaaaaa agaaaaaaga      2520
     aaagcctatt ctgatcaacg agcagaacga aacagcacgt cacgtcttta ttacaacaga      2580
     gttcattctc tctatcgccg atataataga tcctgtcacc gaagttattt gaaacaaact      2640
     gcacgttccc tctgcaagta ccctaggcgc ttttggagtt atatggacaa aaaacgaaaa      2700
     tctgctgggc taccaagcat tatacgttat gacggtgaca gtgcctgttc cctgccagaa      2760
     atgtgtaaat tgtttgcctt gcgcttcaag gacaacttcg cttctcaaac tactggtcca      2820
     gaagatgtgg ccgatgctct ctctaacaca cctgttggtg cactgctccc tatgctacca      2880
     gtcatcactg tcgatacgat cacctctgcc atcaaacgtg tcaaatcctc atatacccct      2940
     ggcccagatg gtataccggc cgttatccta aagtggtgtg cttctgcgct tgctccctcg      3000
     ctgatgaaga tttttaagga gtccctgaga tgtggaacct ttcctgccac ttggaaatct      3060
     tcctggatga cacccatcta caagaagggc tgtaagaatg atgctgtaaa ctatcgtggc      3120
     ataacctcac tcagcgtgtg tgcaaaggtg ttcgaaatgc taatctacga gccattgttg      3180
     gcctcggcct gcaactatat tagtgtgaat caacatggtt ttgtacccag gcgatctaca      3240
     acgactaatc tactagaatt tgttagcaaa tgccataaat ctatcgataa cggtttacaa      3300
     ctagatgcta tttatacgga tatcaaggca gcattcgaca gtgtatcgca ctccatcttg      3360
     ctagcgaaac tcgacttact tggtctccca aaccctatga taatgtggct tagatcgtac      3420
     cttacagatc gtcaatattc tgtgaagtta ggcccgtaca tgtcaagtcc agtgcatgca      3480
     tcttctggag tcccgcaggg cagcaacctg ggtcctttgc tgttccttct tttcatcaac      3540
     gacgcgacat tgatccttcc ggctgataat catctactgt acgcagatga cgcgaaaatt      3600
     tttcgtgtta ttcgtgaacc agaagaccac gcccgactgc aaacttcctt gcatgagttc      3660
     cagtgttggt gcaaccgtaa tgctttatcc ctatgcacac ataaatgtga agtcatcact      3720
     ttcagtcgtt ctcgctgccc atcattgtat gaatatgcgc ttgatggaca gtccttggcg      3780
     cgaaaacaat gtgttaagga tctaggtgtt ttgctcgata caaaactatc atttaaggat      3840
     cagctggatc acgtagtagc caccagcaat agaatgctag gactagttat caatatgact      3900
     cgcgagctta atgatatacc ttgcaccaag gcgctctatt gctcacttat ccggtcgttg      3960
     atggaatatg caaatatcgt atggtggcca actgcagcgc gtccgttagc tcgattggaa      4020
     tcaatccagc gcaaaatttc acgatttgca cttcgctcat ggaaccaaag gctcgattac      4080
     cggactaggt gtttactact cgggctaccc accctaagtg agcgaatacg aaaagccagg      4140
     ttgtcgttca tcacgggact tctcgacggc cgtattgact ctccgtcact actggctgcc      4200
     atcaacctgt acgttccggc caggccgctc cggactcggg caatgttggc cctcgacgac      4260
     cgtagaacgc aatttggctc ctctgacccg ttcctactca tgtgccgtgc tttcaacgca      4320
     gtcagcgacg cttttgagcc gaggatttcg ccaactgagt ttaatgatcg tgtttctgtg      4380
     ttaaatttgg ttccatagtg cacattttta tgttctatgt tattgtaatc cattgtaaag      4440
     aactcattgt aaaacattgc taaaatggtt cgagagggca ttattgtcca tcgatagaca      4500
     aataaacata aacataaaca taaac                                            4525
//
ID   BEL14-I_AG  repbase; DNA   ; ANG   ; 5776 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL14-I_AG is an internal portion of the BEL14_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; integrase; protease;
KW   5-bp TSD; Bel clade; BEL14-I_AG; BEL14-LTR_AG; BEL14_AG;
KW   PHD domain.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5776
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL14_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 35-35 (2003).
XX
CC   [1] (Consensus)
XX
CC   BEL14_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL14-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL14-LTR_AG
CC   LTRs. The BEL14-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 16 copies; they are ~1.5% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1898-aa BEL14_AGp Bel-like
CC   protein
CC   (pos. 57-5750).
CC   BEL14_AGp is composed of the PHD (pos. 9-55), protease (pos.
CC   277-400),
CC   reverse transcriptase (pos. 900-1060) and integrase (pos.
CC   1600-1765)
CC   domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="BEL14_AGp"
FT                 /translation="MGPKKARGCKACGNQVDDTLYVQCDECDAWWHFSCAG
FT                 ITASVEAVEKCAWLCEECARKTLREQSSPREGNKEPKEGTSKHVDGDLVRN
FT                 LSLEAATDGGARPVTNPQRRPLLSLDEANDEIAPGTSTHVAGGPVHNLNQD
FT                 AATEGGVRPVMTPKRRPLSSLDEADRGKTSVSSNIVHRGSCPNLNLDAASD
FT                 DVARQLAVLKRRQEVEKRRMELELQLKFVQEEEALLGFGENKSFSISPQLN
FT                 SFQTEKRTVKRSEEEKEEPDLTPRQEAARHMVSKELPVFSGDPAEWPIFIS
FT                 HYEYTTRRCGYSNWENMLRLQKCLKGPALEAVRSRLVLPDVVPQVIEKLRS
FT                 KYGRPVHLIKTFIEKVRKIPAPQTDKLDSLVEYGEAVQCMVDHMVAAGERA
FT                 HITNPLLLQEVVGKLPTDQQLRWSHHIRGMTSVDLSTFSDYMEDLAEDAAR
FT                 LTTIDSPSVRGTSKGRPTKGYVHAHVDPDGATTSSAAERQCVSCNVAGHVL
FT                 STCTNFRGLPVKDRWRRARELSVCFSCLEKHNWRSCKNRSRCGINDCAFRH
FT                 HALLHDPDAIESPSTADRERRHFPRTSGSQTHQVINNYHQSNPMSALFRIV
FT                 PVTAYGPGVMIKTFAFLDEGSSMTLMDEDLAKQLGVKGDRRPLCIKWTGDT
FT                 TRVEPASMMIDLQIGPVTSTKRFTLKAVRTVTSLSLPQQTFTMDDKRWDHL
FT                 KQLPLPEYRDARPQLLIGLDNLRLAVPLKTREGLAGEPVAVKTRLGWCVYG
FT                 KTAGSQIGRVLHMCECGASDENSTIQGALRKFYELEQLGTVSSDVPDPDER
FT                 RALTILETTTVRIGNRFESGLLWKTDNVELPSSLGMARRRLECLERRMERD
FT                 PKLKTVVHHHIADMMEKGYIHKATSAELAECNSKRIWYLPLGVVTNPKKPG
FT                 KVRIIWDAAAKVQGTSLNDMLLKGPDELISLPGVLFRFRMYGIAVCADVKE
FT                 MFLQIRMRDEDKHAQRFLWREDPADDIATYFVDVVTFGSACSPATAQYVKN
FT                 RNAKEHAEKYPRAVRGILTSTYVDDYLDSFGTFEEASRVSREVRGIFSNGG
FT                 FVLRNWVSNNPVVLERLGGESSSPGMKSLTSTADDGERVLGLRWNPSSDQL
FT                 SFYTQACVGMAEIFETECTPTKREVLKCVMSLFDPLGLLANFTIHGRILIQ
FT                 DLWRAGTGWDEAISPSQMRDWRRWVDVFPLIAQLRIPRCYFPEAREKVYEN
FT                 AELHLFVDASQLAYACVLYLRVVDSEGEPHCTMLCGKAKVAPLKPLTIPKM
FT                 ELQACLLGARLLKSTEQHHPISVKKRVLWTDSTVALSWIHADPRNYRPFVA
FT                 NRVAEIQENTNVNEWRWVPTQDNPADEATKWKGRANFNWDGIWFQGPSFLL
FT                 QDEESWPTRRLVSTTPEEEIRRVNLHREKLNPGLLPLKAERFSRLERMIRT
FT                 LAWIVRYVDNLMRKVGGAPLHLGILSQDELERAETIAWKQAQGEYFQDEVR
FT                 VLSVGEGTGRSTVPKESPIYGLLPYADERGVLRMRGRIGAAPELPYAARYP
FT                 IVLPRDAWITHLLVDKFHRRFRHANNETVVNELRQYFQIPKMRRLVSKVVR
FT                 QCVFCHIRRTLPQIPPMAPLPKQRLTAFVRPFTFVGLDYFGPLLVRRGRAQ
FT                 EKRWVALFTCLTIRAIHLEVVSSLSTDSCILAVRRFVARRGAPVEVFSDNG
FT                 TNFVGASQQLRKEIDERNDALAATFTNANTRWTFNPPGAPHMGGVWERMVR
FT                 SVKAAMSTMTELQRTPDDETLLTVIVEAEGMINTRPLTYIPLESADQESLT
FT                 PNHFLLGSSSGVKQRPVAPTSLQTGLRSNWKMVQHILDGFWRRWIKEYLPV
FT                 LARQSKWFETVREIEVGDIVLIVDGGARNQWKRGIVERVVSGADGRIRQAW
FT                 VRTNTGTLRRPAAKLALLEIRKGDK"
XX
SQ   Sequence 5776 BP; 1463 A; 1325 C; 1755 G; 1233 T; 0 other;
     ctcttttgcc tacaaaaaag ggttcttcag tgcgttaagt gtaatagtga agaacaatgg        60
     gaccgaagaa agcacgtggt tgcaaggctt gcggtaatca ggtcgacgac actttgtacg       120
     tgcagtgcga tgaatgtgat gcgtggtggc atttctcgtg tgccggtata acggcatccg       180
     tagaagccgt ggagaaatgt gcgtggttgt gcgaggagtg tgccaggaag acgctgagag       240
     agcaatcatc gccacgcgag ggcaataagg agcccaagga aggaacctcg aaacacgtgg       300
     atggggatct cgttcgtaac ctcagtttgg aagcagcgac ggatggcggg gcgcgcccgg       360
     ttacaaaccc acagaggcgg ccgcttttat cgctcgatga ggccaacgac gagatagcgc       420
     caggaacatc gacccacgtg gcagggggac ccgtacataa cctcaaccag gatgctgcga       480
     cggaaggcgg ggtgcgcccg gtcatgacac caaagaggcg gccgctttca tcgctcgatg       540
     aggccgacag aggtaaaacg tctgtctcat cgaacatcgt gcacagagga tcgtgtccta       600
     acctcaacct ggatgcggca agtgatgacg tggcacgtca actcgccgtg ctgaagcggc       660
     gacaggaggt ggagaaacgg cgcatggagc ttgaactgca gctgaagttc gtgcaggagg       720
     aagaggcact tctcgggttt ggggaaaata agtctttttc aatttcacca caacttaact       780
     cttttcagac tgaaaagaga acagtgaaac gcagcgaaga agaaaaagag gaaccagacc       840
     taactccacg acaagaggct gcgcggcaca tggtttctaa agagctccca gttttctccg       900
     gtgatcccgc tgagtggcca atttttatat cgcactacga gtatactacc aggcgatgtg       960
     gatactcgaa ttgggagaat atgctgcgcc tgcaaaagtg cctgaaagga cctgccctcg      1020
     aagctgttcg gagtcgattg gtgttaccgg acgtagttcc gcaggttatc gagaagctac      1080
     gttccaaata tgggcggccg gtgcacttaa ttaaaacatt catcgagaag gtgcggaaga      1140
     ttccggcacc ccaaactgac aagctggaca gtttagtcga gtatggggaa gcagtgcagt      1200
     gtatggtgga ccatatggtt gcggctggtg aacgtgcgca tatcaccaac ccgctcttgc      1260
     tgcaagaggt ggtcggcaag ttaccaacgg atcaacagtt acgttggtcg catcacatcc      1320
     gcggaatgac ctcggtagat ctgtccacat tcagcgacta catggaggat ttggctgaag      1380
     acgctgcgag gctgacgaca attgactctc cttcagtgcg cgggaccagc aagggaaggc      1440
     ctacgaaggg ctacgtccac gcgcacgtgg atccagatgg agcgacaacg tccagcgcgg      1500
     ctgagaggca gtgtgtatcc tgtaacgtcg cggggcatgt attgtcgaca tgcactaatt      1560
     ttcgaggact gccggtaaag gatcgatgga ggcgagcgcg tgagctatcg gtgtgcttta      1620
     gctgcctgga gaagcacaat tggcgatcgt gcaaaaatcg ctctcgttgt ggaatcaacg      1680
     attgtgcatt ccgacatcac gcgcttctac acgacccgga tgcaatagag tcgccttcta      1740
     ctgcagaccg agaacggcgg cacttcccga gaaccagtgg aagtcagacg caccaggtaa      1800
     taaataatta tcatcagtcg aatccgatgt cggcgctttt tagaatcgtt ccagtaacag      1860
     cgtatggacc cggagttatg ataaaaacct tcgcgttcct ggacgaaggt tcgtcaatga      1920
     cgctgatgga cgaagacctg gcaaagcagt taggggtgaa gggagataga cgacctctat      1980
     gtatcaagtg gacaggtgat acgactaggg tcgagccggc gtcgatgatg atcgatttac      2040
     agatcggacc tgtgacgtcg acaaaaaggt tcaccctgaa agctgtgcgg actgtcacca      2100
     gccttagcct cccacagcaa actttcacga tggatgacaa gagatgggac catcttaagc      2160
     agctgccatt accggagtac cgtgatgctc ggcctcagtt gttgatcggg ctggacaacc      2220
     ttcgattggc ggtgccgctg aagacgcgtg aaggccttgc aggggaaccg gttgccgtaa      2280
     agactcggct tggatggtgc gtgtacggaa agacggctgg aagccaaatc ggaagggtgc      2340
     tgcatatgtg cgagtgtgga gcatcggacg aaaactccac catccagggg gccttacgca      2400
     agttttatga gttggagcaa ctcgggactg tctccagtga cgtgcctgat ccagatgaac      2460
     gaagggcact gacgatcctg gaaacaacga cggtgcggat tggtaatcgg tttgaaagcg      2520
     gtctgttgtg gaagacagac aacgtggagc ttccttcgag cttgggtatg gcgcgtcgca      2580
     ggctggaatg cttggaaaga agaatggaac gtgaccctaa gctgaaaacc gtggtgcacc      2640
     atcacatagc cgatatgatg gaaaagggtt atatccacaa ggcgacgtct gctgagcttg      2700
     cagagtgtaa ttcgaagcga atttggtacc tgccgttggg agtggttacc aatccgaaga      2760
     agccagggaa ggtgcgcatc atctgggacg ccgctgctaa ggtacaaggt acgtccctaa      2820
     atgacatgtt gctgaagggg ccggacgagt taatttcttt gccaggggtg ttgttccggt      2880
     ttcgaatgta cgggatagcg gtgtgcgctg atgtcaagga aatgttcctg cagatacgca      2940
     tgcgcgacga agacaagcat gcgcagcggt tcctgtggcg ggaagatcct gctgacgata      3000
     tcgcaacgta tttcgtggac gtcgttacct ttgggtcagc ctgctcccca gccaccgcac      3060
     aatacgtgaa aaaccggaac gccaaggaac atgccgaaaa ataccctcgt gccgtacgtg      3120
     gcatcttgac cagcacgtat gtcgacgact atttggatag tttcggaaca ttcgaagaag      3180
     ccagtcgagt atccagagaa gtcaggggaa tcttctcgaa cggcgggttc gtactccgga      3240
     actgggtttc caacaatccg gttgttttgg aacggctggg cggcgaaagc tccagtcccg      3300
     gtatgaagag tttgacatct acggcggatg atggagaacg ggtgctcgga ttgcggtgga      3360
     acccgagctc ggaccaattg tccttttaca cgcaggcgtg tgtgggaatg gcggagatat      3420
     ttgagacgga gtgtacccct accaagcgag aagtgctcaa atgcgtgatg tcactttttg      3480
     atccgcttgg actgttggca aactttacca tccatggaag gatcttgatt caagaccttt      3540
     ggcgagctgg taccggttgg gatgaggcca tcagtcccag tcaaatgcga gattggcgta      3600
     gatgggtgga tgtttttcct ctgatagccc agcttaggat tccgaggtgc tacttcccgg      3660
     aggcacgaga gaaagtgtac gagaatgcgg agctacactt gtttgtggat gccagccagc      3720
     tagcgtacgc ttgcgtgctg tatttacggg tcgtcgattc tgaaggagaa ccgcattgta      3780
     ccatgctatg cggaaaggca aaggttgctc ctctgaagcc tttgacgata ccaaagatgg      3840
     agttacaagc ctgcttgtta ggtgcacggc ttctgaagtc cacggaacag catcacccga      3900
     tttctgttaa aaaacgggtg ctctggacgg acagcacggt ggcgctatca tggatacatg      3960
     ccgaccctag gaattacagg ccatttgtcg cgaatagagt ggcggagatt caggagaaca      4020
     ccaacgtgaa tgagtggcga tgggtgccca ctcaggacaa tccagcagac gaagctacca      4080
     aatggaaagg gcgtgcgaac ttcaactggg atggcatttg gttccagggt ccatcatttc      4140
     tgctgcagga tgaagagtct tggccgacga gaagactcgt ttcaactact ccggaggaag      4200
     agatacggcg ggtcaacctt caccgtgaga agttgaatcc tggacttctc cctctaaaag      4260
     ctgaacgctt cagccgcctg gaaagaatga tcaggacgtt ggcgtggatt gtcaggtacg      4320
     tggacaattt gatgagaaag gtgggaggag cccctctaca ccttgggatc ctctctcaag      4380
     acgaattgga gagagcggag acgatcgcgt ggaagcaagc gcaaggggaa tattttcagg      4440
     atgaagtacg agtcctgagt gtcggtgagg gaacaggaag gagtaccgtg cctaaggaaa      4500
     gtcctatcta tggtctctta ccctacgcgg atgagcgtgg tgttttgcgc atgcggggac      4560
     ggattggagc agctccggaa ctgccatatg ctgccaggta cccaatcgta ttgccacgtg      4620
     acgcatggat aacccacctg ctggtggaca aatttcatcg ccggtttcga cacgccaata      4680
     acgaaaccgt ggtgaacgag ctgaggcagt atttccaaat cccaaagatg agacggttgg      4740
     tttcaaaagt ggttcggcaa tgcgtgttct gccatattcg acgaacattg ccacagatcc      4800
     ccccgatggc tccattaccg aaacagcggc tcactgcatt cgtgaggccg ttcacatttg      4860
     tgggactgga ctactttgga ccgctgttgg tgaggagagg aagagcacag gagaaacgat      4920
     gggtggcgct tttcacatgc ctaaccataa gagcaattca tttagaagtt gtgagtagtc      4980
     tttccacaga ttcctgtatt ttggcagtga gacgctttgt ggccaggaga ggcgctcccg      5040
     ttgaggtgtt cagcgacaac gggacgaatt tcgtgggagc cagccagcag ctaaggaagg      5100
     aaatcgacga gcgcaacgat gccttagctg cgacctttac caacgcgaac acccgatgga      5160
     cgttcaaccc ccctggcgca ccccatatgg gaggggtatg ggaacgcatg gtgcgatcgg      5220
     tgaaggctgc gatgagtacg atgacggaac tacagcgtac acctgatgac gagacgctgc      5280
     ttacggtgat agtggaagcg gagggaatga tcaacacacg cccactgacg tacatcccgc      5340
     tggaatcggc ggatcaggag tctcttactc ctaaccactt cttgctgggc agttcatcgg      5400
     gagtgaagca gagaccggtg gcaccgacta gccttcagac ggggttacgg agcaactgga      5460
     aaatggtgca acatatcctg gacgggtttt ggagacggtg gataaaagag tatcttccgg      5520
     tgttggcacg gcaaagcaaa tggtttgaga ctgtgagaga gattgaggtt ggagacattg      5580
     ttctgatagt cgacggtggc gctaggaatc agtggaagag agggatagta gaacgagtgg      5640
     tttcgggagc cgacgggcgg atacgacaag cttgggtgcg aacaaacaca gggaccctca      5700
     gaaggccggc ggctaaactt gccttattag agataagaaa gggtgacaaa tagcgtattg      5760
     gtcacgggct ggggga                                                      5776
//
ID   RETRO23_AG_LTR repbase; DNA   ; ANG   ; 720 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO23_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RETRO23_AG_I;
KW   RETRO23_AG_LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-720
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO23_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 7-7 (2002).
XX
CC   [1] (Consensus)
XX
CC   4 bp target site duplication.
XX
SQ   Sequence 720 BP; 172 A; 112 C; 179 G; 257 T; 0 other;
     tgtaatgtga tgatcgtaca actgtacttc gagtaccgtc gcggtaggtc agtgttttac        60
     tgacatgagc cgaggtggaa taaaacttcg ttcgaagcgg acttttcgac acttgatcgt       120
     ccaggcgatc atagaaacct ttaggaggtt tcccttactg gaaacgttgg agtttagagg       180
     ccttaccttg ggtaggggga cataactaaa ctctttaaat gagaagtcga tagatgtagg       240
     atgggcatag tcctatcctg acagtccgaa cgaatctgac ttgccatgat cggagttggt       300
     tttatttata ctcaaaagaa gttaagggtt tctcacattt ggttccgggt tgtatgttgg       360
     aaagttattg ttttcactca gctagttacg tttgtctttt gttgacaaga acgatggttc       420
     ttgtcactaa gttcctgttt tgggtttaat gcatatactg ttcctgcttt gggttataat       480
     gcataaactg ttcctgctta tgttgtacgt ttcggttggt tctgataagt gtgtcacaat       540
     tgtttttata tgaacggtgt ggcctgagct cttccgggtg tgtatggtat gatctgattt       600
     actgaatgtg ttataatgaa tgtgttacaa tggtgtggtt tggctttcca aagtgtgtta       660
     caatgtgtct atagctgata gtgtgtatta taataagttc tgtatagcag atatgctaca       720
//
ID   INVADER1-I_AG repbase; DNA   ; ANG   ; 4626 BP.
XX
AC   .
XX
DT   13-2002 (Rel. 7.11, Created)
DT   13-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   INVADER1-I_AG, an internal portion of the INVADER1_AG Gypsy-like
DE   LTR retrotransposon - a consensus sequence.
XX
KW   gag; LTR retrotransposon; GYPSY superfamily;
KW   reverse transcriptase; endogenous retrovirus; integrase; protease;
KW   INVADER group; INVADER1-I_AG; INVADER1-LTR_AG; INVADER1_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4626
RA   Kapitonov V.V., Jurka J.;
RT   "INVADER1_AG: a family of Gypsy-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2(11), 15-14 (2002).
XX
CC   [1] (Consensus)
XX
CC   INVADER1_AG is a member of Gypsy-like retroviruses that belong
CC   to the INVADER group originally identified in Drosophila (see
CC   description of INVADER1_DM in drorep.ref).
CC   Members of this group encode one long polyprotein composed of
CC   the gag, protease, reverse transcriptase and integrase domains.
CC   A similar 1363-aa polyprotein, called INVADER1_AGp is encoded
CC   by INVADER1-I_AG (positions 488-4576).
CC   Positions of domains in INVADER1-I_AGp:
CC   gag: 1-350; protease: 360-540; reverse transcriptase: 550-1050;
CC   integrase: 1085-1363.
CC   INVADER1-I_AG is flanked by long terminal repeats,
CC   INVADER1-LTR_AG.
CC   Solo LTRs or proviral copies are flanked by 4-bp target site
CC   duplications.
CC   INVADER1_AG has been integrated into the mosquito genome during
CC   the
CC   last one million years. There is 99% identity of INVADER1-I_AG
CC   copies
CC   with the consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="INVADER1-I_AGp"
FT                 /translation="MATVKQLCEDFTKIGLVRECERLGLETTGGKVEIANR
FT                 IVKYRATVASGDNAGPSGSGHRAEPANATDDVENYAGNQPYESCDDDSEEK
FT                 ADLDLPEEEHGDSFVAEDDDETEEDPFQTAVRISTPKRPQRVYAFRDVEDS
FT                 IETFGAEDGHDVRIWLAHLDSVSKSAGWNDEQKLIMLRKKMTGIARKFVSS
FT                 LRNVQTYAILKKELIAEFAPFVRSSDVHRILANRKKETAETMREYVYEMQR
FT                 IAAQIDLDEPSLCEYIVNGVTDDDFFKSLLYEAQTIRVLKEKLLNFEKVRM
FT                 ARKKKTTDKEENKRVLSSSSRVDKRAEQRCYNCGNKGHQARACAQTQGGPK
FT                 CFSCREYGHKASECARNKSVVPAKINVTEESVGMVDVVLNKTSVKALFDSG
FT                 SNQNLVTIGCYKRIEGSPLIDTSMWFQGFGGMRTKAIGMFTVDVTVDDNVF
FT                 SGVRFFVVPNESMSYDAVLGRDSLNYFEVTMTTAGVKVRPYGSTDEMFSIV
FT                 CDNEDNLDVSPRFSERVKAVISGYKPAGNVNSRVETKIILHDETPVRSSPR
FT                 RFAPGEKAVLEKTIDEWLAAGIIRESESDFASPVTLARKKDGSLRVCVDYR
FT                 ELNRKMVKDCFPMRNIEDQIDRLKSARVFTTLDLKNSFFHVPVEKSSQRYT
FT                 GFVTHTGQYEFLRTPFGLVNSPASFSRFVADVFREFIKSERVLVYVDDLII
FT                 PSLDEESNFQTLKELLNVASENGVQFNWKKSQFLKDEVEYLGYVIRGGCYR
FT                 IAPSKLRSVQLFPEPKNVKQLQRFLGLTSYFRKFIAGYATISKPLTSLLQK
FT                 GVEFVFGEEERSSFDELKRCLVTDPVLKIYDESAETELHTDASKYGYGAAL
FT                 MQKSDDDKFHPVAFMSQQTSNAEKNYSAYHLEVLAVVRAVEKFRVYLLGIK
FT                 FKIVTDCAAFGHTLKSKELSARIARWALMLEEYEYEVVHRPGSSMKHVDAL
FT                 SRAPVMIVKSDPMIEAIRKMQQSDERAKAIIELLKTQSFEDFVMCDGLLMK
FT                 VVKGREVIVVPSGMQSDLIRRIHEKGHLGARKIEGIIEQEFYIPNASEKIK
FT                 QTIECCVKCILAERKRGKVDGLLYPIAKGDVPLDTYHVDHLGPMDITEKRY
FT                 KYLFVVVDAFSKFTWIYPTKTTNSFEVIQRLTTQSEVFGNPRRIISDKGAA
FT                 FTSNDFKRYCEDQDIERVEVTTGVPRGNGQVERVNQVIIAMLRKMSVNDPA
FT                 KWYKHVANIQRWINSSPHQSIGVTPFEAMFGVPMRHEGDLRLGELMEEIRV
FT                 AQHHDQREQTRAGARVSIEKAQEEQRRSYDLRARSATTYREGDLVVIKRTQ
FT                 FGPGRKYAAEYLGPYKVTSVRPHDRYDVEKINGEGPKVTSTASSHMKPYRF
FT                 "
XX
SQ   Sequence 4626 BP; 1323 A; 804 C; 1339 G; 1159 T; 1 other;
     tgggggctca accgggatac ttttttccca aacgagtgag gcttttgcga tgaaagcaat        60
     cggtgcgata ttgtgtgatg tttcgtgagg ctattttgtg attaaatagc aaaaaactgt       120
     gaggcttttt tataagcaaa tagtgagacg ttttgtgaaa gagaagaaca gtgaggctta       180
     tgtagcaacg cgtgcggatc agtgaggctt tcgtagcaat ccgtgcgaat cagtgaggct       240
     tgtgaagcaa ttagtgaggc tttattttta gcaaccagtg agaatccgtg agtgatagcg       300
     aggcttttcg aagcacaccg agtgaagaaa ttaagcgagg cttcacagca atctgtgtgt       360
     gaaaattctg tgtgaatttt acgggtcaac tagtgtgaca ttttgtgcgt gagtgcggga       420
     agtcgcgaat tgcctggtag tgtgtgtcgg ctttgtgagt gaaagtaccg cgagagagag       480
     agatagaatg gcaacggtca agcagctttg tgaagatttc acgaagattg ggttggtgcg       540
     cgagtgtgag aggcttggcc tagaaaccac tggaggaaaa gtggaaatcg cgaatcgaat       600
     tgtgaaatac cgagcgacgg ttgcgtcagg ggacaacgcc ggtccgtccg ggagtggaca       660
     cagagcagaa ccagctaacg ccacagacga cgtcgaaaac tacgcgggta accaaccgta       720
     cgagagctgc gatgatgatt ccgaggaaaa agcggatctg gatcttccgg aagaagaaca       780
     cggtgatagc tttgttgccg aggatgacga tgaaacggaa gaagaccctt ttcaaactgc       840
     tgtgcgaatc tcgacgccta aacgaccgca acgcgtttac gcatttcgag atgtggaaga       900
     tagcattgag acgtttggag cagaggatgg gcacgatgtg cgtatttggc tggcacacct       960
     cgattccgta tcaaagtcag caggatggaa tgacgaacaa aagctaatca tgttacgtaa      1020
     aaagatgacg ggaatcgcaa gaaagttcgt gtcgtctttg cgtaatgtgc aaacttatgc      1080
     gatattgaaa aaagagctga tcgcggaatt tgctccattt gtgaggtcga gtgatgtgca      1140
     tcggattctc gcgaatcgga agaaggaaac ggccgagacg atgcgagagt acgtttacga      1200
     aatgcaacga attgctgccc aaatcgattt ggacgaacca agcttgtgtg agtacatcgt      1260
     taacggtgtg accgacgatg attttttcaa atcattgctg tacgaggcgc aaacaattcg      1320
     agtattaaaa gaaaagttgc tcaactttga aaaagtgcgc atggctcgaa agaagaaaac      1380
     gacggataaa gaagaaaaca aacgagtttt gtcatccagt agccgcgttg acaaacgggc      1440
     ggagcagcga tgctacaatt gcggaaacaa aggacaccaa gctcgcgcgt gcgcgcagac      1500
     acagggtggt ccgaaatgtt tctcgtgtcg tgagtacggt cataaggcga gcgagtgtgc      1560
     gcggaacaaa agcgtcgttc ctgcgaaaat caacgtgacg gaagaatcgg tgggaatggt      1620
     tgatgtcgtg ttgaacaaaa catcggtcaa ggcattgttt gacagtggaa gcaaccaaaa      1680
     cttggtgaca ataggttgtt acaaaagaat cgagggatca ccgctgatcg atacttcgat      1740
     gtggttccag ggctttggtg gcatgagaac aaaggcgatc ggcatgttca cggtggacgt      1800
     tacggtggat gataacgttt ttagtggtgt gcgatttttt gtggtgccaa atgaaagcat      1860
     gtcttacgat gcagtattgg gcagagattc cttgaactat tttgaagtta cgatgacaac      1920
     ggcgggtgtc aaagtcaggc catatggttc aacggatgaa atgttttcta ttgtgtgtga      1980
     caatgaagac aatttggatg tgtctcctcg attttcggaa agagtaaagg cggttatttc      2040
     ggggtacaaa cctgcgggaa acgtgaatag tcgtgttgag acgaaaatta ttttgcatga      2100
     cgagacgcct gtgcgttcgt cgccaaggcg ttttgctccg ggtgaaaagg cggtgctgga      2160
     gaaaacaatc gacgagtggt tagccgcggg aataattcga gaaagtgaga gtgattttgc      2220
     gagtccggta acgttagcga gaaaaaagga cggttcctta cgcgtttgtg ttgattatcg      2280
     cgaacttaat cgaaaaatgg ttaaggattg ttttcccatg aggaacatag aagatcaaat      2340
     cgatcgcttg aagtcagcca gagtttttac cacacttgac ttgaaaaatt cgttttttca      2400
     tgttcctgtg gaaaagtcga gccagcggta cacaggcttt gttacccaca caggccagta      2460
     cgagtttctt agaacgcctt tcgggttggt caatagtcca gcgagtttca gccggtttgt      2520
     agcggatgtg tttcgggaat tcatcaagag tgagcgtgtg ttggtgtatg tggatgattt      2580
     aataattcct tcattagatg aggaaagtaa ttttcaaacg ttgaaggaat tgttaaatgt      2640
     cgcgagtgag aacggtgtgc agttcaattg gaaaaaatcg caatttttaa aggatgaagt      2700
     ggagtatctc gggtatgtga ttcgcggcgg gtgttatcgc atagcgccga gtaagttgcg      2760
     atcggttcag ctttttccgg aaccgaaaaa tgtgaagcag ctgcaaagat ttttgggact      2820
     tacgagttac ttccgaaaat ttattgctgg ttacgcgaca atttcgaagc ctttgacaag      2880
     tttgcttcag aaaggtgttg agtttgtgtt tggtgaagag gagcgttcga gttttgatga      2940
     gttgaaacgg tgtttggtga ccgatccggt gttaaagatc tacgacgaaa gtgccgaaac      3000
     cgagctccat acggacgcgt caaagtacgg ttatggtgct gcgcttatgc agaagagcga      3060
     cgacgacaag tttcatcctg ttgccttcat gagtcaacaa acatcaaacg cggagaagaa      3120
     ttatagtgcg tatcatttgg aagtgctagc ggtggttcgc gctgttgaga agtttcgtgt      3180
     gtatctctta ggcatcaagt ttaagatcgt tacagattgt gcagcgtttg ggcatacttt      3240
     aaaatcgaaa gaactgtcgg ctagaatcgc gagatgggct ttgatgctcg aagagtatga      3300
     atatgaagtg gtgcataggc caggttcatc gatgaagcat gtggatgcgt tgagcagggc      3360
     accggtgatg attgtgaaaa gcgaccctat gatagaagcg atcagaaaaa tgcaacaaag      3420
     tgacgagcgt gcgaaggcaa ttattgaatt gttaaaaacr caatcttttg aagattttgt      3480
     catgtgcgat gggctgctga tgaaagtagt gaaaggtagg gaagtgattg tggtaccatc      3540
     ggggatgcaa agcgatttga tacgtaggat acacgaaaag ggtcacttag gagctcgtaa      3600
     gatagagggt attatcgaac aggagtttta cattccaaac gcgagtgaga aaataaaaca      3660
     aacgattgag tgttgtgtga aatgtatcct cgcagagcgt aaaaggggaa aagttgacgg      3720
     tttattatac ccaatcgcga aaggtgacgt tccgttagac acgtatcacg tagaccattt      3780
     gggtccaatg gacattacag agaaaaggta taaatatttg tttgtagtag ttgatgcgtt      3840
     tagtaagttt acttggatat atcctactaa aacgacgaat tcatttgaag taattcagcg      3900
     attaacgaca cagagcgagg tatttggtaa tccaaggcgt attataagcg ataaaggggc      3960
     tgcgtttacg tcaaacgatt ttaagcggta ttgtgaggat caggatatcg agcgtgtgga      4020
     agttacgaca ggtgttccgc gcgggaacgg gcaggtagag agggtaaatc aagtgattat      4080
     tgctatgttg cgaaagatga gtgtaaacga tcccgcaaag tggtataagc acgttgccaa      4140
     tattcagcgg tggattaatt ctagcccaca tcagagcatc ggtgttaccc cttttgaagc      4200
     gatgtttggg gtaccgatga gacacgaagg agatttacga ctaggtgagc tgatggaaga      4260
     aattcgagtg gcccagcatc acgatcaacg agagcagact cgagctggtg ccagggtttc      4320
     tatcgagaaa gcccaagaag aacaacggag atcgtacgac ttacgagcgc ggtcggctac      4380
     aacttaccgc gaaggcgacc tggtggtgat taagcggacg cagttcgggc ctggaaggaa      4440
     gtacgcggct gagtaccttg gaccatataa ggtaaccagt gttcgtcctc atgatcgcta      4500
     tgacgtggaa aagatcaatg gcgaagggcc aaaagtgacg tcgacggctt cgtcacatat      4560
     gaaaccctat cggttttaat gcggtgagga tccttcgggg cgaaaggatc ggtcgaggaa      4620
     aggccg                                                                 4626
//
ID   P4_AG       repbase; DNA   ; ANG   ; 7669 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   P4_AG, a P-like DNA transposon - a consensus sequence.
XX
KW   hAT; DNA transposon; Interspersed Repeat; P superfamily; HATN2_AG;
KW   P4_AG; composite transposon.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-7669
RA   Kapitonov V.V., Jurka J.;
RT   "P4_AG: a family of P-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(2), 26-26 (2003).
XX
CC   [1] (Consensus)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of those families is P4_AG.
CC   P4_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 27 bp long (4 mismatches).
CC   Subterminal inverted repeats are 28 bp long (4 mismatches), their
CC   positions are 64-91 and 7606-7580.
CC   The P4_AG consensus sequence was reconstructed from
CC   6 copies that are only ~2% divergent from each other.
CC   Presumably, P4_AG copies have multiplied in the genome
CC   during last 2 million years. P4_AG elements carry a copy of the
CC   hAT-like HATN2_AG transposon, that was inserted into an ancestral
CC   form of P4_AG.
CC   The P4_AG encodes a 877-aa P-like DNA transposase called P4_AGp.
CC   Putative exons (based on FGENESH): 310-570, 2573-4146, 4211-5011.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="P4_AGp"
FT                 /translation="MSTCAASFCQHSRYIVKKMGLDVIFHKFPTDPTLLRK
FT                 WVEFCQREEAWVPSISSILCSAHFNKTDYQLINSPSKANRKILKKLKPSAF
FT                 PSVIKSQAREPSNNVVQQCSTNNVVQQIETDEGRIDTSVEHHDDDLPSDNI
FT                 THAKCQNCVQNETEIELLNQTLKKTQDKCNNLLEVNTFLSKQLEIVSKELT
FT                 QSQKEIELLKTNHNKFKDVAISPNEFTTRMKNVLKDTLTSNQIDLITEERK
FT                 RVRWTKAELSKFFTLRYLGKRAYQYLRDDLNFPAASISTLQRYGRTLNLKQ
FT                 GILDDVINLLKNITVDLPECHRECVLSFDEMKVNRILEYDPASDEVLGPHN
FT                 YLQVVMARGLFKNWKQPVFIGFDQQMTKEILFELIKRLYAIKINVVAIVSD
FT                 NCQSNIGCWKDLGAHDYCHPFFSHPITKCNIYVFPDAPHLLKLIRNWLIDT
FT                 GFEYNNKLIKADKLFELVAYRNAAELTPVHKLTQNHLVMTPQERQNVRRAA
FT                 EVLSRTTAIALQRYFPDDCDAQELASFIEKVDMWFSVANSYSPCAKLHYKK
FT                 SFNANENQLAALSDMFELMSNITALGKKSMQVFQKSLLMHITSLKMLYEDM
FT                 RKKHSIVYISTYKLNQDVLENFFSQLRQIGGVHDHPSPLHCMYRIRMMILG
FT                 KSPTTLKNHTELKNDDVENSHEHHEEFLSATVFSVADIPQSVPDISVMEKT
FT                 NQICQAIEECSQESDLISTVSSTCNVQSAQESDGLQYVMGYIANKYNTKYP
FT                 ELDLGVQTFKLTTDHCYSQPPTFVQHLSAGGLFEPSPTFLLLGNRMEKIFL
FT                 KMHPDGTFSKTKKIVAKIAKNIQNQISELPVEIIRTFAKQRMIVRMRFLNL
FT                 KSSTENLMKSKRKHVNQHGKGAKK"
XX
SQ   Sequence 7669 BP; 2520 A; 1306 C; 1374 G; 2469 T; 0 other;
     caaggttagt tgaggataga ggttgaagca tccagtgtaa attgacaagc agctgtggga        60
     aaattttgac agttcggtaa gaggttgttt atgttctcag acctacggca tgtggatgtg       120
     gactcgtgta gaaacaaaca ttgtaaatct gtgtcgcgca atagagttgt gaaaaatcac       180
     taaatttgta caaagcatat cgtttatatt gatctaagta catcacacgg ctttctaaaa       240
     aggtaaattt ttgattatta tgtgttttac tgcaacaagc ctaatttatg tttgctattt       300
     cagtgtgcat catgtcaacc tgcgctgcat ccttttgcca acacagccgc tacatagtga       360
     aaaaaatggg tctggatgta atttttcata aatttccaac agacccaacg ctgttacgca       420
     aatgggtaga attttgtcaa cgagaggaag cttgggtgcc atcgataagc agcattttat       480
     gttcagcaca tttcaacaaa actgactacc agctaatcaa ttcgccttcg aaggctaata       540
     gaaaaatttt aaaaaagctt aagccgtctg gtaagttttc atgtaatgtc ccacactaat       600
     ctatactaat ataagcatac atttgataaa gttactaaat ttgaagggtt catacatgta       660
     gctgctgttt cttcgacgtt tcgcccaacg tcgatgtttt actccgaatc gagttcatgt       720
     tttccttcgt agaccataag gttactccga cttttaagta ttgaacgagt tattaggaac       780
     gcaatgataa gcaaccagaa agtaaataat caagttcatt attaaaacca ggactaatta       840
     tcgtgaacga ttcgcaaaga ctaatatgat ctgcatacat catctacatc agtggtctcc       900
     aacctgtggt ccgttgcgtt aacagacgtg gtccacgaaa gaattatttt tgaaaaagaa       960
     aagcttaata ctatggatta tagtacacaa tcattataaa attttcaaca agcatatcta      1020
     aaatgagatt taaacgtatt tttgatcaaa aacattaagt aaagttaaaa aaaagtatgc      1080
     actcattaga tgtgagccgc ggcaaatgta ttttcaagcc aagtggtccg cgatcctaaa      1140
     aaggttggag agcactgatc tacatcattg cacacatctt gctttctcaa acttcctcct      1200
     caaattgtgc cattaaccct taccgtttta aattttgttt gcttcgttgt tcccagttgc      1260
     ttcattagaa tgtgcgcaac atatattctt acaggtcatc caccacatcc gaagttttgt      1320
     tttactttat gtgattttag tactattttc agttccaaca tccgttcaac gcaggtttta      1380
     caggaaagag cttcttttga aaatcctgcg attgatttgt tcgtaaaatc ctaccgtgta      1440
     tgcttccgcc gtgaatcgct ccggtgcgat acttttcgat gttcatatag atctgcacat      1500
     acattcattt atttttggta atcgatggtt tgtccgccag ttcaccatcg aatgaattgt      1560
     cttatgcagt aatacaacat acatgacggt atcgttgctg ttcgattcca ttgtagcaga      1620
     aggcttagca gaaggtccat ttgaaacgtt gttttcgttt ttgttcgatt tttctgcaag      1680
     agaaaatgtg gaagttgatt caagtggcag tcccactact cctcgcgaag ccgttggctt      1740
     tgggtttgat tcaattttct tgtcttcttt tggtacttga ttcagttttc ctgtgtgtat      1800
     cagattattt attgactcat tatgaagcac actttgttac gcaccattgt gtagtatatt      1860
     tgcaaataaa aaaatcatat ttaaactaca taaattcttg cctttcctaa tgccatcgaa      1920
     gtaactttga ttttggatac tgtcgccatg tagtagctgt gaactcgtgc tcgccagagt      1980
     ggccttcaaa catagttaaa gaaggtaatc gttgcgaaag aaggttacaa gttacaagtt      2040
     ataaacagtc gctttttgcg tgattagttg ctatgcattc tcgattcacc tacttttcta      2100
     taagtgtgta tcaattgctt ttgtatgaat ggtgtggcct gctttattcc ttaactggta      2160
     ctatacaaat tattatacaa ataataataa taataataat aataataata ataataataa      2220
     taataataag ttattataag tcaaatataa ggtaaaaatt ataataattt aagactcttt      2280
     tcttcaatga tgcactaaac aaaagcttag attgaaatat tactattcta agctcgaaag      2340
     tgataaataa cggatgggaa ttaacgtaga taagtgaaac ggtaatattt tgctgaatca      2400
     tctatttgtc tgcaaagact attatacata actttaagcg cttaattgta acaataacag      2460
     ttattcacat ataataaaat gtaacaaata tttcttaaat aaaaaataca taaatatgag      2520
     gcaaatctat ttcaattcgt taattatttc attcttacct ttttctattt agctttcccg      2580
     tcagtgataa aatcacaagc tcgtgagcct tctaacaatg tagtacaaca atgtagtact      2640
     aacaatgtag tacaacaaat tgaaacggac gagggtcgca tcgatacatc tgtagaacat      2700
     catgatgacg atctaccatc agataatatc acacatgcga aatgccaaaa ttgtgtacaa      2760
     aatgaaacag aaattgaact tttaaatcaa actcttaaaa aaacacaaga taaatgtaac      2820
     aacttattag aggttaatac atttttatca aaacagcttg aaatcgtcag caaagaactt      2880
     acacaatccc aaaaagaaat tgaactttta aagactaatc ataataaatt taaagatgtt      2940
     gctatatcac caaacgaatt cacaaccaga atgaaaaatg ttttaaaaga tacgcttaca      3000
     tcaaatcaaa tagatctgat tactgaggaa cgtaaaagag ttagatggac taaagcagaa      3060
     ttaagtaaat tttttacact tcgttattta ggaaaaagag catatcagta tttaagagat      3120
     gatttaaatt tccctgcagc atcaatttca acactacaac gatacggaag aacattgaac      3180
     ctcaagcaag gaattttaga tgatgtaatt aatttgctaa aaaacattac cgttgatctg      3240
     ccggagtgtc atcgggaatg tgttttgtca ttcgatgaaa tgaaagtgaa tagaatttta      3300
     gagtatgatc cggcctctga tgaagttctc ggtcctcaca attatttaca agtagtaatg      3360
     gcaagaggat tgttcaaaaa ttggaagcag ccagttttta ttggttttga ccaacaaatg      3420
     accaaagaaa ttttatttga attaatcaaa cgtctttatg ctataaagat aaacgttgtt      3480
     gcaatagtta gtgacaattg ccaatctaat attggatgct ggaaagattt aggtgctcat      3540
     gactactgtc atcctttttt cagtcatcca ataacgaagt gcaatatata tgtttttcct      3600
     gatgctcctc atctgttaaa actaataaga aattggttga tagatactgg ttttgaatat      3660
     aacaataagt tgataaaggc agataaattg tttgagctgg tagcttatag aaatgcagct      3720
     gaattaactc ccgttcataa actaacacaa aatcatttgg ttatgactcc tcaagaacgt      3780
     caaaatgttc gaagagcggc cgaagtttta tccagaacca ctgctattgc attacaaagg      3840
     tactttcctg atgattgtga tgcacaagag ttagcctcat ttatagagaa agtcgatatg      3900
     tggtttagtg tagctaactc atattctcca tgtgctaaac ttcattacaa aaaatctttt      3960
     aatgcaaatg aaaaccaatt agcagcatta agtgacatgt ttgaactgat gtcaaacatt      4020
     acagcattgg ggaaaaaatc tatgcaagtt tttcaaaagt ctcttttgat gcacataaca      4080
     tcgctaaaaa tgttgtacga agatatgaga aaaaaacaca gcatcgtata tatctctact      4140
     tataaggtta gtattgaaca atagtgaaag atttcagtca actaatgtta tgttttattt      4200
     ttgtttacag cttaatcagg atgttttgga gaacttcttc tctcaacttc gccaaatcgg      4260
     aggcgtacac gaccatccat ctccattaca ttgcatgtat agaatccgaa tgatgattct      4320
     tggtaagtca ccgactacat tgaaaaatca tacagagcta aaaaatgatg atgtagagaa      4380
     tagtcatgag catcacgagg agtttctatc tgcaacagtt ttttctgtag cggatatccc      4440
     tcaatctgtt ccagatattt cggtcatgga aaaaacaaat caaatctgcc aagcaattga      4500
     agagtgtagt caagagtcgg acttaataag tacagtcagt agtacctgca atgtgcaatc      4560
     agctcaagaa agtgatggac tgcaatatgt aatgggatac atagctaata aatataatac      4620
     taagtatcca gaattagatt taggcgtcca aacttttaaa ttaacaactg accattgtta      4680
     tagtcaacct cctacctttg tgcaacattt gtccgcagga ggattgtttg aaccatcgcc      4740
     tacattttta ttattaggta atcgaatgga aaaaattttc ttaaaaatgc atccggatgg      4800
     tacctttagt aagactaaaa aaattgttgc caaaattgcg aaaaatattc aaaaccagat      4860
     aagcgaacta ccagtcgaaa taatacggac ctttgccaaa caaagaatga ttgttagaat      4920
     gcgcttcctt aatttaaaaa gtagtaccga aaatctcatg aaaagcaagc gaaaacatgt      4980
     aaatcaacat ggaaaaggcg caaaaaaatg agaaaaatat tgaactagtc tatacattat      5040
     ctattctcat gtaaatcaat taatgagaca tgtaattaat ttgttttatt tttgttgtgt      5100
     taatgccgat agtatttatt taattattta ttggactatt tactaagata tttgctagtt      5160
     agtttatgta aattatcttt ttatctatta ttttatttat ttattcattt atttatttat      5220
     ttatttattt atttatttat ttgtttgtta gtataatcaa attgttggta gtcgtataca      5280
     tagattttcc ttgtgtttta tccattaaac agacttcatt tttttattct gaaggctacc      5340
     atatgtgatg cttatttatt aatctgtgtt atgtagtaat ctgcatccat ttataatatt      5400
     ttctttggtt atttgtaatt ggctaccggt ttttgattca atgtttcagt cctaatactt      5460
     gtaaatgttt gaatgagtga tttatcgtgc attttttggg acagtctggt ggtacagtca      5520
     agaacatacc cgtcatgtgt ttaagcccgt atctatcgta ctccccaaaa gattagaaga      5580
     tgtacaagaa gattcataac gccgaataga tctagtttgc tttcatttca tcgtctgcaa      5640
     tgccccagaa ttaattacat cacactacaa tggtcttcat ggggttctca attaggtata      5700
     tttaaataga tcatgatgaa tcgttgtagt aagaaaatac tgatatgctc ttttatattt      5760
     aataagaacg gacctgccgt attccacgta ttattttttt ttattctgta ttattgtaat      5820
     gaactattga ttttttgctt taataacccg taatattttg aaatgtatta tagcaaatat      5880
     gtaaaatagt ccacattacc tcattttcat gtataaataa ccattttgta acaacaatat      5940
     gatctataat cgtaaatcac ttgttaaggt ttgtcagtat attttaggat ttcacactga      6000
     tgtaaaacac tgaattaaaa catgcaaaaa cgctagcacg taaggtattc cgctgtatta      6060
     gaaattattt agaataatac ggtaataaaa catgagaact ttttaaattg ttatttaatg      6120
     catgaaagtg cattgtgtta ccaatacact gaaatgtaca aataaagcaa aaacaatcaa      6180
     gaaactttac ccgttcacca actgtatttt ctcactcact catccgaaaa attaccattt      6240
     tgttaaagag taagtaagta agtaatggaa gatccaaaat taaggtgtta cgatcagtgg      6300
     ctcggattaa gggtgtcggg ggccctaggc ggtaagacta gttgaggccc cctgtcaatt      6360
     gtaaatggtg ttctaggggg tcagtcgata atcagtcaca ggctctaaaa tttgctggca      6420
     gtggaggggg gggggggggg ggagggtgaa aatgatttgc cagccttggg gccacaacgt      6480
     ccatccttcc gggggccatt gccgctatta ctctgtccat acggcatact atagacttca      6540
     gaactacggg tcccctaaat cggcggggcc ccaggcgacc gcctagtccg tctaccggta      6600
     gatccgccac tggttacgat gagtatctca tagaaatgca ttattttgca tacttcttgt      6660
     ttcctattct caagatgagc taaaacgcac cagtttttgc caatatatct aagcagtttg      6720
     ttccttcctg ggcaaatctt cctaacgtgg ccacgtatgg aatcataaat tagaaaataa      6780
     ttaaaaccgg tataaactta cagctacgcg cagttgttaa ccattatacg ctgtcagtaa      6840
     aattttcgag gttaatgata agcatatggc acaattcacc gcttgactgt aagtggttcc      6900
     tgacactctt gcggaaggta aaccattatc ctgattacaa actgcttcca atttttaggt      6960
     ataactaatg ccatacaaat caacaatgct aagctttctg aggtgtacgg tgaatcggat      7020
     atcctaacgg tagtcagggc ctatgatacg atggctgggg catgtaatga aaatgccgta      7080
     gtaatgccct ccaagaaagt ggtcggtcct gtgtttggta ctaggtggat ccggaatcag      7140
     gctaagcagg gtctgtcggt gatcggatgc ctgcattgat ggacgctgaa ggcatcgagc      7200
     ctcctgataa aataatagta gtcccggcca ttcaacggcg ctgggctcaa tcgtaagcag      7260
     gccaatgaga aagaaaaagt gagataagag caggatttga ggattggagc ttttggaagt      7320
     tattggagtt agtttccgtg acctgtgatt acatggagct agatatgtac acgaagctgc      7380
     atatgaagtt atcagcacga gtaacaagga actggaaaga ttgcgataaa taaaagttta      7440
     gtttgtaaca cctaaagcaa taaaccacat agtcagtttt acatatacgc acgatttgta      7500
     ttatttcaca tgttttttct gtatttgaac taaaaaatgc gagctaaaag aacagcaccc      7560
     atctgctgca attatttgta aacactttct tactgaactg tcaaaacagg attcaaaatg      7620
     tcagaccaga aacaagctat aattcgacct ctatcctcaa tagaccttg                  7669
//
ID   P3_AG       repbase; DNA   ; ANG   ; 4394 BP.
XX
AC   .
XX
DT   13-2002 (Rel. 7.11, Created)
DT   13-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   P3_AG, a P-like DNA transposon - a consensus sequence.
XX
KW   P; DNA transposon; Interspersed Repeat; P superfamily; P3_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4394
RA   Kapitonov V.V., Jurka J.;
RT   "P3_AG, a young family of P-like DNA transposons from African
RT   malaria mosquito.";
RL   Repbase Reports 2(11), 23-22 (2002).
XX
CC   [1] (Consensus)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of the youngest families is P3_AG.
CC   Some P3_AG copies are identical to each other. It's possible,
CC   that P3_AG is an active DNA transposon.
CC   P3_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 29 bp long.
CC   The P3_AG encodes a 879-aa P-like DNA transposase, called P3_AGp.
CC   Predicted exon/intron structure (based on FGENESH and GENSCAN):
CC   356-614, 679-2198, 2260-3120). The P3_AGp transposase is
CC   43% identical to the P1_AGp transposase encoded by P1_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="P3_AGp"
FT                 /translation="MPRSCAAAFCKNNAENVKKRGLNITFHSFPSDDSLPK
FT                 WIDFCKRDEHWKPTKISTVCSLHFKPDDYQMAKSSLPQTLPVLKRLKPYAI
FT                 PSLIQPADFIQNEPSNMTAPLKECNQPNVEFQTDSEYFSDVENVPSQTIID
FT                 MKRELDQVKEDNRKLIEVNTNLRDKLHSYFNENKRLKAEIDNLQKHISKKD
FT                 AGIDEAALVTAMKERLKPTLSENQIDIILKKKKRVVWTKEEIGSALTLKYF
FT                 GLRCYKYLAKDRKFPLPADATLKRYTKNLVVKEGILDDVLKLISNLTSTFT
FT                 EKDRLCALSFDEMKVNRIIELDKASDEIIGPHNYLQVVMARGLCNKWKQPV
FT                 YIGFDKKMTKEILLKIIEKLSEININVVAIISDNCSTNVSCWKELGAKDYE
FT                 RPYFQHPTTLNNVYVIPDAPHLLKLLRNWFLDSGFTYNGKHIKADLLFDMI
FT                 ASRNETEITPLYKLSKTHLVMTPQERQNVRRAAQLLSHTTAISLRRYFKNN
FT                 AEATDLANFIEKVDLWFSISNSYSPFAKLDYKKSYTASDDQIKALDEMFEI
FT                 VSNMTVIGKHSLQIFQKSLLMQITSLKLLYDDLHKRHNISFISTHKLNQDV
FT                 LENFFSQLRQIGGVYDHPSPMSCIHRIKMIILGKAPTFLKNQTDLEPSTFS
FT                 CTDEYISSQIRTSIEIENEGSEQANDGDIISASIITSALNQPPVKQSIQSD
FT                 TLSSRSSEMLSSVSSSAIELPEQDSDGLEYIMGYIGRQCFEKFPHLNLGNL
FT                 SLNLNSDHSYSHPPSFVKHLSVAGLFVPSEAFLKQGYKMEKIFQKLHPNGN
FT                 FNKKRYISKRLVKRLQKEFPELPLIVVQQFAKHRINIRIKFLNMKIANEKR
FT                 VNNKRKAPSHSKTAKKCEKLQISCFV"
XX
SQ   Sequence 4394 BP; 1513 A; 768 C; 847 G; 1266 T; 0 other;
     caaagtgaat gaaagggagg tgagcttatg tagaacattt ggcttgcggg attttagaaa        60
     aatgaaataa agtttgacag tttgtaaccg ggtcggctgg acggtttgtt tacatttgat       120
     agctattgga ctggtccatg ttgttgatgc aacggcgaga agtgtgtgac taaaattcgt       180
     gtaaaagaaa atagtacgct ttcgggtgtt aatattttat tataccaggt aaaatataaa       240
     ttgtacaagt tgcagggaat gtattaaatg gatttatttt ctatttttag agaaaaagca       300
     aatctggaag cagcgttgtt tgtagctgtg tccacagaag tttgtaggaa gcaacatgcc       360
     tcgctcatgt gcagctgcat tctgcaaaaa taatgcagaa aatgtaaaga agcggggttt       420
     gaacattact ttccactcgt ttccatcaga cgattctttg cctaagtgga ttgatttctg       480
     taagcgggat gaacattgga aaccaaccaa aatatctact gtgtgctctc tccatttcaa       540
     acccgacgac tatcaaatgg caaaatcatc tttaccacaa accttgccag tactgaagag       600
     attgaaacca tatggtaagg aaagatatga gctttatgca gtaattatca tttcatcaca       660
     ttctcatctc tttattagct attccatcat tgatacaacc agccgatttt attcaaaacg       720
     agccatcgaa tatgacagcc ccattgaaag agtgtaacca gccaaatgta gaatttcaaa       780
     cagattcaga atatttcagc gatgtagaga acgtgcccag ccaaacaatt atagacatga       840
     aaagggaact tgatcaagtg aaagaagata atcgaaaact gatcgaagtg aatacaaatt       900
     taagagataa actgcattca tacttcaatg aaaataagcg actaaaggca gaaattgata       960
     acttacagaa acatatttca aaaaaggatg caggtataga tgaagctgca cttgtcacag      1020
     caatgaaaga aagattgaag ccaacattat ctgaaaacca gatagatatt attttgaaaa      1080
     agaaaaaacg tgtagtttgg acgaaagagg aaattggctc cgctttgaca ctcaaatatt      1140
     ttggattgcg atgctacaaa tatttggcta aagatagaaa gtttccttta cctgcagacg      1200
     caactttaaa acgatacaca aagaacctcg ttgtaaagga aggaattttg gatgacgttc      1260
     ttaaattaat aagcaattta accagcactt ttactgaaaa agatcgcctt tgtgctctgt      1320
     ctttcgatga aatgaaagtt aacagaataa ttgaactgga caaagcatcg gatgagataa      1380
     ttggaccaca taactatctg caggtcgtga tggctcgagg actgtgtaac aaatggaaac      1440
     aacctgtgta cataggattt gataagaaaa tgacaaaaga aatactcttg aagataattg      1500
     aaaaactaag tgaaataaat attaacgttg tagctatcat cagtgacaac tgctctacaa      1560
     atgtaagttg ctggaaagaa ctgggagcta aagactacga aaggccatat ttccaacatc      1620
     ccacaacttt aaataacgtg tacgtaatcc ctgatgcacc tcatttatta aagctactaa      1680
     ggaattggtt tttggatagt ggatttacgt acaacggaaa acatataaag gcagacctac      1740
     tttttgacat gatagccagt agaaatgaaa cagagattac acctttatat aagttgagta      1800
     aaactcattt agttatgacg ccacaagagc gtcagaatgt tcgacgtgcc gcacagctgc      1860
     tctcacatac tactgctatt tccttgcgtc gttattttaa aaataatgct gaagctacgg      1920
     acttggcgaa tttcattgaa aaagttgact tatggttcag catatcgaac tcctatagtc      1980
     ctttcgccaa attagactat aaaaaatctt atacagcaag cgacgatcag ataaaagcat      2040
     tagatgaaat gttcgaaata gtttcaaata tgaccgtgat tggtaagcat agcttgcaaa      2100
     tttttcaaaa gtcgttgctg atgcagataa cgtctcttaa attgctttat gatgatcttc      2160
     ataaaagaca caacatttcc ttcatatcca ctcacaaggt aattaatgac ataaaaaaca      2220
     tcatatattc atattgatct atcatccttt ttaatttagc tcaatcaaga tgtactggag      2280
     aattttttct cacagctaag gcagatagga ggggtatatg atcatccctc accaatgagc      2340
     tgcattcatc gtattaagat gattatatta ggaaaagcac ctacgttcct taaaaatcaa      2400
     acagacttgg agccatctac attttcttgt acagatgaat atatctcatc gcaaattcgg      2460
     acatcgattg agattgaaaa tgaaggttct gaacaggcta atgacggtga tataatttca      2520
     gcatcaatca ttacctcggc cttaaatcaa cccccagtta aacaaagcat acaatccgat      2580
     accctgagtt caagaagcag tgaaatgtta agctccgtca gtagttccgc tatcgagctt      2640
     cctgaacaag acagcgatgg actcgagtat attatgggtt atattgggcg tcaatgcttt      2700
     gaaaagtttc cgcatttaaa tttgggtaat cttagtctga atttgaatag cgaccattcg      2760
     tatagccatc caccttcatt tgtaaagcat ttgtcggttg ctggtttgtt tgttccttca      2820
     gaagcttttt tgaaacaagg atacaaaatg gagaaaatct tccaaaaatt gcacccaaat      2880
     ggaaatttta acaaaaaacg ttacatatca aaaagattag ttaagcgact tcaaaaagaa      2940
     ttccccgagt taccgctaat agttgtacaa caatttgcta aacatcgcat aaatatacgt      3000
     atcaaatttc ttaatatgaa aatagcgaat gaaaaaaggg ttaataacaa acgaaaagca      3060
     ccatcacatt ccaaaactgc gaaaaaatgc gaaaaattac aaattagttg cttcgtttaa      3120
     cggatttata aaacagacag aaatatgaat tacataaatt tacttataaa ttttgattat      3180
     gtataaatta taaatgtata tattagtgaa taagcatttt ttttaataat atcatgatgt      3240
     attataaacg gtgaaattaa ccaggttgat tctaatgata atattcattt agagactaac      3300
     tattccgact agaacatata aatgaaataa atgaagttgt tcgcaatgtt gtttgtttcc      3360
     ctagcaaaat accaatagca ggctccaggg cctgccaccg gcatgcggga aagttaactg      3420
     gcaggccctg ggacctgcca tcgggctgaa cgtgttaaac gattggcacg gcgaccaatt      3480
     cagaaaaaaa gatgttgagt atatttgtaa cagtcatgca tactgttgag catactattt      3540
     tgcttctgat gattcttttg agtagcgcta gcatgtacct atgcacttgt tttttcaaca      3600
     aataacgtat gtaatttcag ccgtcgtctg gtatcgtagc attctaagag tttggttagg      3660
     ctatcttatt cggttctaat gctccagtgt tagatttcgc taatatttac gttgcctaag      3720
     ctgtttagtt gtaaattgtt ggcctggaaa aataccaaaa atgagttata tagaaatgta      3780
     gcaaatgaag aacttcaagt atcatcaagc tcgtaagatt acagtcaagc ttctgtgctg      3840
     catatgagcc ggaatatttc atcgcctttg atgcgggact tcctttctgc agccgaggtg      3900
     gaatgtaccg tcaccgtgat gcgatgcaga cgggaccata tacgccgagg ccgatgcaga      3960
     aggtgatgcg cttaagggag ggagaatgac ttcctccctt gatgtgcggc tggtgtgaag      4020
     cctggccaat ggagtcgcca acgatgaaac ggcagcaggg gccaatctct ttagggttca      4080
     caaagcagca cgttcaactg taacgtaagc acgtaatccg aattccgtaa tgaattgttt      4140
     ccaatatctg aaaataatac aaatcagtaa ctattccatg aagataagga attacattga      4200
     tgagggactt acattagaat actgaaataa tgaaacaatc catacaatgc ctgttgaaga      4260
     aataaaactg attgtgcgac gatgttatgc acaggaagaa aaggtaaaca ataccggtta      4320
     tatagtgtca aatttgacaa tcgtcatggc gacctaaatc tttcgataag ctcacctccc      4380
     tttcattcac tttg                                                        4394
//
ID   CR1-4_AG    repbase; DNA   ; ANG   ; 4411 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   CR1-4_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   Non-LTR retrotransposon; reverse transcriptase; CR1 clade;
KW   AP endonuclease; DNA/RNA-binding; PHD finger; CR1-4_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4411
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-4_AG, a subfamily of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 15-15 (2003).
XX
CC   [1] (Consensus)
XX
CC   CR1-4_AG is a young family of CR1-like non-LTR retrotransposons.
CC   The CR1-4_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~50 copies identified in the
CC   sequenced portion of the genome. Given the ~1% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-4_AG occurred less than 1 million years ago.
CC   The 3' terminus of CR1-4_AG is composed of the TAAA
CC   microsatellite.
CC   CR1-4_AG encodes two proteins: a 349-aa CR1-4_AG-ORF1p
CC   (positions 363-1409) and 965-aa CR1-4_AG-ORF2p (positions
CC   1430-4324). CR1-4_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (positions 3-40). CR1-4_AG-ORF2p is composed of
CC   the AP endonuclease and reverse transcriptase domains.
XX
SQ   Sequence 4411 BP; 1287 A; 967 C; 779 G; 1377 T; 1 other;
     cggggagaga gttggccact gaagcgtttg gacgtgtttc tgcgttgctc ctgtgtactg        60
     tctgtttttg gtgtgatttt ggtttgaaat cgttcgtttt tgagtttgtg aagctgttcc       120
     tgtcgcaagt tttgctgtgt tgctgtgttg aagcattttg ttcctgcatc gtacgagaat       180
     ttctacgaga acgcgtgcct gaatttgtat tttctgcgtg atttgtgttt catcggcgac       240
     agcggttcag tgttattgac cctgcttaat acactcagag agtaattcgc accagctcat       300
     caataagtgt cctctccgtt cactctcact gctcacctaa gtgatcgata ctctctctca       360
     taatggactg tgcaatctgc tctactacta tcaacaaaga tccggttgtt tgtattggca       420
     atcttccttt ttcggagtgc aattctgcct ttcatccgga atgcattaaa cttgccgcca       480
     cttgtgttaa ggaggtggca cgcaatcgtg gtctctgctg gatgtgcgag aaatgccgtg       540
     actcgagatc agatttattc tcatcaattt cgtgcttgat gaatacactg aaagatgagt       600
     tgaaaaatgc aatacggagt gagcttgatc aaaggatatc tcagctggat ccaaatagag       660
     tgatgccgca agagcgtgag aaaatcgctc cgactgtgag taccatctct ctcaccgata       720
     aaacattcca cacatccacc gatactccta tgtcaccaac accaactccc gtcaaacaga       780
     actcactacc acactctcaa tcgcgtatgc tctctgataa tgaacacata aatccaacac       840
     aagcaattct tcacaccggc actgccaatg atcacatcaa cacagacacc atacaattca       900
     ttcctgcacc tgagccaaaa gtttggatgt ttgtaactag gattgcaccc actgtaactg       960
     aggagaacat gaaaatgttc attctaggaa ggttaaaatg cactgactgt tcggtgaagt      1020
     gtgtcatacc aagaggtcgc gttacaagct cactaaagta tgtgtccttt aagatcggca      1080
     ttccatcgga gtttggcgag ctcgctttct ctccttcaac ttggccatgc ggatttgttt      1140
     accgccagtt tgaatttcac caacgtacac agaaacaatt cacaccaaca ctcccggtat      1200
     cttgctttcc tgcttcaaac aattcaactg ccagaagttt ctcaactact aattttatgc      1260
     ataatgatgt caactgcata aatgtgatcc caccaacaca cacaacacaa catagtccat      1320
     caccgagcca tcatcttaaa aatgcaaact cacctgaaac tcacctgact caaaayaatt      1380
     cctccggttc gactttttta agccaacatt aagtcattca actgtaccta tggagccagt      1440
     actaaacaca ttcaatatat tttatcaaaa cgtgagaggc ttacgtacta aaacctctga      1500
     atgttttgct aatactgcaa tcgccgactg ggatgttatc gttcttacgg aaacgtggct      1560
     agatgacagc tttccatctg agcttttgtt tgataacaac cgctttaata cattccgtac      1620
     ggatcgttct gcagcaaaca gtaacaaatg tagaggtggt ggtgtcctcg ttgcgatcaa      1680
     tgcaaattat gcttcctctc tgtgctcgac aaacacatct acaattgaat gcctttgggt      1740
     tcgagtaaaa gttcttaatg tttcgctaat catcggatca ttttatttgc ctcctgatca      1800
     atcagccaac atggacacca taaatgcatt ctgtaattca ttgcacttaa cgagagagaa      1860
     atataagaat gactttttta ttctgttcgg ggacttcaat caacctaatc ttaagtggga      1920
     tatcaacggc aaatttccga cactgaatct tatgcttacc cgactatccc ctaccagtca      1980
     agctctactc gatgaactaa gctttgaagg tcttcgccaa cttaacactg ttctaaacca      2040
     caataacaac atgttagatc tagtgtttgc gaacgacaaa gttactgatt acatgaggcc      2100
     aatcgaatta tgcatcgaaa gtattgttga acctgatgga catcatccag ctttacttac      2160
     atacttcacg ctcccgcaat acagtgtgcc gtcatctaaa cccccacgtc aagcagattt      2220
     caattttaga cgaactaatt tcactgatct cgtttctgca cttaaccaaa tcaactggga      2280
     ctctatcgct gaccatgacg acatcaacga cagtgtggct gaattttctt ctcaaatgaa      2340
     tgaactgtat gaacaattca tcccacggtt taatgttcgt gctcatccac catggaccaa      2400
     ttctgcacta cgtttggcta aacgtcgaag atcacgggcc cttaaaaaac tgcatcgact      2460
     aaaaaacagc actaatcaaa taaattttgc tcgcgcctca aaaatatata agcagctgaa      2520
     ccgaaccgcc tacgccaact acgtcaggaa aattgaaatc aatatcaaaa gacatcccac      2580
     atcattctgg aaatttgcta aagataagga atcctgtgga cgacttcctt cctcgatgca      2640
     gtttgaggga aacaccatta ccggagatga agagttttgc aatgcatttg cctcatattt      2700
     ctcttctgtg tacaccaaca attcctcggt accgtctaac tcaacatcgg ctttatcctt      2760
     cataaatgat gaggttaatt tatgcacacc actaatcaac gatgatgagg tggaatctgc      2820
     tatttcgttg ttgaagcttt cctacgcacc tgggcctgac aatattccca gcgcaattct      2880
     cattaactgc aaggctgctc tcattcccat actgaccaaa ctattcaaca aatccttgca      2940
     atcgaaatgc ttcccgcgtc tttggaaatc atcgtggatg tttcctgttt ataaaaaatc      3000
     tgacaaaagt aatgtgtgca attatagagg aatttcaatg ttatgtgcgt gcagtaaact      3060
     gtttgaaaag ataatgtctc gtcatatgct ccaagccttt tcaccattaa tttctaatgt      3120
     tcaacatggc tttatgccga aacgatcgat tgagaccaat ctaatatact tacttaactt      3180
     ttgccactcc tatattgaca agggcttaca ggttgacgtc atttatactg acttctgcgc      3240
     tgcttttgac aaggtcaacc actttctatt gctatctaaa ttatcaaagt atggtgttca      3300
     cacaaatgtt gttgagtggt taagaagtta tttaactgat cgttgcatta acgttaagat      3360
     aggaactagt ttatctgcca cattccataa tttatctggt gttcctcaag ggagtatatt      3420
     aggaccttta ctatttatta tatttattaa cgatgtcgtg tttgctattc ctcatgttaa      3480
     attgttatta tatgctgacg atctaaaaat gttcctacct gttaaatatt ctgacgactg      3540
     tgaaatgtta caagactcgt taaactattt ttctgcatgg tgttttaata atgaaatgtt      3600
     acttaatgtt agcaaatgta gttgtataac attctcaaag aaaaaaaatc ctattattta      3660
     taactacaaa atcaatgaag acagcgttcc acgtttttct caggttcggg acttaggagt      3720
     tattttagac agtaagctta gtttatctag ccattatcaa actatcgtca ctaaagctct      3780
     taaactgtta ggatttgtct tacgtgtctc ggccgacttt aaagatcctt tcagtttaaa      3840
     aacattatac tgttctttag tccgtcccat cctggaattt gccagtgtag tttggtgtcc      3900
     ccatcaaatc acatacatag ataaaattga aaaaattcag aaaaaaatca cacgtgttat      3960
     gtttcatcgt cttccctggt caaaccaaat tccacgtcct tcgtataatg ttcggtgttt      4020
     actatttggc ttagagactt tacagcatag gagaactacg gctcagataa cttttatgca      4080
     taaattatta attggagatt ttgatgcacc tgacatttta aattttattt gcttttctac      4140
     tccctctaga ggtcttagaa gtagagagct actaagaagc ccttttagat cgactggttt      4200
     tggtgccaat gatccactgc tcaaaatgat tgatgtgtat aataggttag ggttatcagc      4260
     agatttcaat caatccgtta gtcagctgcg tcagcatatt caagttagtt ctagggccat      4320
     aatttaaact tgtactctgt aagcattaag ttatttaggc atactgcccg ataactttga      4380
     tttaaataaa taaataaata aataaataaa t                                     4411
//
ID   GYPSY46-LTR_AG repbase; DNA   ; ANG   ; 328 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY46-LTR_AG is an LTR of retrotransposon GYPSY46_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; Gypsy clade;
KW   GYPSY lineage; GYPSY46-I_AG; GYPSY46-LTR_AG; 4-bp TSD GYPSY46_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-328
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY46_AG, a member of the Gypsy lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 85-85 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY46-LTR is a long terminal repeat of GYPSY46_AG (its internal
CC   portion is deposited as GYPSY46-I_AG).
XX
SQ   Sequence 328 BP; 101 A; 79 C; 79 G; 69 T; 0 other;
     agttagaccg acccgctaga aaccagactg caagctggca ttccacaccg gctacgagca        60
     gacgaagatg taacgctaca ccggccacga gcggacaacg gcgacatgcg caagtaatgc       120
     gacacgcaga ccgatcgtga gaacggacca atgcagccag caaccagcgg cctcgttaga       180
     acattagctc gttaggttta gtcagtcgaa gtcgaagtct agagtcagcc agatatagat       240
     catagtttag ctttagtcag gagtaatcct gtttgtgtaa aataaaaatc ttttttttat       300
     ggccaaccgg cctagataaa gattaact                                          328
//
ID   GYPSY31-LTR_AG repbase; DNA   ; ANG   ; 181 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY31-LTR_AG is an LTR of retrotransposon GYPSY31_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; Gypsy clade;
KW   4-bp TSD GYPSY31_AG; GYPSY31-I_AG; GYPSY31-LTR_AG; MDG3 lineage.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-181
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY31_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 55-55 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY31-LTR is a long terminal repeat of GYPSY31_AG (its internal
CC   portion is deposited as GYPSY31-I_AG).
XX
SQ   Sequence 181 BP; 77 A; 33 C; 30 G; 41 T; 0 other;
     tgtaaacaat ttaaaattag gttacttata cttatctcgg gtgcaataat ctaatctaca        60
     agaactgcaa taaaatagga atgacagcga gcagaacggc acttcctacg acacacgaaa       120
     aaacgataga aagccctcgt gtacgaaaaa agcaacaatt gtaaaaataa agctgtttac       180
     a                                                                       181
//
ID   TRANSIB3_AG repbase; DNA   ; ANG   ; 2070 BP.
XX
AC   AAAB01008960;
XX
DT   29-JAN-2002 (Rel. 7, Created)
DT   29-JAN-2002 (Rel. 7, Last updated, Version 1)
XX
DE   TRANSIB3_AG is a coding portion of a TRANSIB-like DNA transposon.
XX
KW   Transib; DNA transposon; Interspersed Repeat; transposase;
KW   TRANSIB superfamily; TRANSIB1_AG; TRANSIB3_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-2070
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB3_AG.";
RL   Direct Submission to Repbase Update (27-2002).
XX
DR   Genbank; AAAB01008960; Positions   16423   14354.
XX
CC   TRANSIB3_AG is a copy of a young Transib-like DNA transposon.
CC   The copy encodes a 709-aa TRANSIB3_AGp transposase.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="TRANSIB3_AGp"
FT                 /translation="TGKFNFLNHTIHYNRVSNMVSLQVREIVDQFNFGDSQ
FT                 ITNINKALAYVDTKARNRELDIEAARSEVENIYLTRAQLQWDQCNRVRGTF
FT                 EANNAEWLASKFPTQLLSNGASTSNTNSCSLPANYEQSSELAERMKIRFME
FT                 HSETESANERTSPTRIARRKAYRLKEYNIMKQISLLLQSPRDLLISTDHSD
FT                 MLSDEEVLAFYIDLGLTEAQYKSTMSSLVPSRFPSFNAIRRAEALCVPFHE
FT                 QIVTTECAVKMEMQCLVEYTVRRILEMQKKVLRDFLTEKQLNVTLKLRCVF
FT                 TYGIDATSGHGTDVLISVLSPIKLHLDDASHHIFWLNVTPQSYRFCRPISL
FT                 QLAKPSKALVLQTTKHSVDEQISNLKPMHIVLEDDKAVDVEFEFVLSMIEG
FT                 KVLSYMLDDSSTTCCLICCAAPSEMMDASILATSGFIGQEEPLVYSISPIH
FT                 CWLTFFELLLQLSYRMDFKEWQVPEVQRTTFNERMKTVQQRLYEAFGVRVA
FT                 ETADAGSSSSTNTMGYISRRVLADPALASTTLNIDQDLIERFRNILIAINS
FT                 RHPLHPAKVQQYCSDTYRKYLTELYSWSRVPAAVQKVLAHAGQLIVRSPLR
FT                 LGYVGKKSGEIEHNYFTSDRELCARTTSKQDALKDPFVEALTICSDPKISS
FT                 ISLSNRIKRKKRAAYPDVVASFFIFDESYCETDDDDDSNSGDDDEDDLDSL
FT                 DEFWTELDWLTNEDIAHVKG"
XX
SQ   Sequence 2070 BP; 614 A; 461 C; 470 G; 525 T; 0 other;
     tttaatttct taaatcacac gatacactac aaccgagtga gcaacatggt ttcattacaa        60
     gtgcgagaga ttgtggacca atttaacttt ggcgattccc aaatcacaaa cataaacaaa       120
     gcgttagcct atgttgatac gaaggctcgg aaccgggagc tagacatcga ggctgcccgt       180
     tccgaagtgg aaaacatcta cctacgtgct caactacagt gggatcagtg taatcgcgtc       240
     cgaggcactt tcgaagcaaa taatgcagaa tggttggctt ccaaattccc gacccagtta       300
     ctgtccaatg gtgcttctac atcgaataca aatagctgta gtctgccagc taactacgaa       360
     cagtccagtg agcttgctga acgaatgaaa atacggttta tggagcattc agaagagtcg       420
     gcgaacgaaa gaacatcacc tacacgaatc gctcgccgga aagcatatcg gctcaaagaa       480
     tataacatca tgaaacagat cagcttgttg ctgcaatcgc cacgcgatct tctcatatca       540
     acggatcatt ctgatatgct gtccgatgaa gaagtattag cattctacat agacctgggt       600
     ctgaccgaag cccagtacaa atcaatgagc agccttgtgc cttcccgctt tccatcgttt       660
     aatgccatta gaagagcaga agctttatgt gtgccgtttc atgaacaaat tgtgactaca       720
     gagtgtgcag tgaaaatgga aatgcaatgt ctggttgagt atacggtgcg aagaatattg       780
     gagatgcaga agaaggtgtt gagggatttt ttaacggaga agcagttgaa cgtactcaag       840
     ttacgatgtg ttttcaccta cggcatagat gccacatcgg gccatggtac tgacgttttg       900
     atcagtgtcc tatccccaat taaacttcac ctggacgatg cgtcacatca cattttttgg       960
     ctcaacgtta ctccgcagag ttatcgtttt tgtagaccaa tttcattgca gctagcgaag      1020
     ccatcaaaag cattagtcct tcaaaccaag cacagtgttg atgaacaaat ttccaaccta      1080
     aaaccaatgc acattgtttt ggaggatgat aaagcagtcg atgtggagtt tgaatttgtg      1140
     ttaagcatga tcgagggtaa agttttatca tacatgctgg atgattcgtc gaccacttgc      1200
     tgtctgattt gctgcgcagc cccatcagaa atgatggacg cttcaatcct ggcatcgggt      1260
     tttatagggc aagaggaacc gttggtgtat agtatttcac ccatccattg ttggctaaca      1320
     tttttcgagc tgctgctaca actgtcatat aggatggact tcaaagaatg gcaagtcccg      1380
     gaagtgcaac gaaccacatt taacgaaaga atgaaaaccg tgcaacagcg tctctacgaa      1440
     gcgtttggcg taagagtagc agaagcagat gcagggtctt cctccagcac aaacacaatg      1500
     ggatacatca gccgacgagt gttggccgat cccgctcttg caagtaccac gctcaacatc      1560
     gaccaagatc ttatcgaacg cttcagaaac attctaatcg caatcaatag tcgtcatccg      1620
     ctgcaccccg caaaggtaca acagtactgc agcgacacct atcgcaaata tctggagctc      1680
     tacagctggt cccgagttcc ggcagcagtg cagaaagtct tagcacacgc cggtcaactg      1740
     atagtacgct cacctctgcg tttaggctat gttggcaaga agtctggtga gatcgagcat      1800
     aactatttca catcagatag ggagctctgt gcaagaacaa cttcaaaaca agatgctttg      1860
     aaggatccat ttgtggaagc acttatctgc agcgatccta aaataagttc tatatcgctt      1920
     agtaatagaa tcaagcgtaa aaaacgagct gcttatccgg atgtagtagc gagctttttc      1980
     atatttgatg aaagctattg tgaaaccgat gacgacgatg attctaatag cggcgacgac      2040
     gatgaggacg atttggactc gctcgatgaa                                       2070
//
ID   BEL13-I_AG  repbase; DNA   ; ANG   ; 5752 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL13-I_AG is an internal portion of the BEL13_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; integrase; 5-bp TSD;
KW   Bel clade; RING Zn-finger; peptidase; BEL13-I_AG; BEL13-LTR_AG;
KW   BEL13_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5752
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL13_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 33-33 (2003).
XX
CC   [1] (Consensus)
XX
CC   BEL13_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL13-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL13-LTR_AG
CC   LTRs. The BEL13-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 6 copies; they are less than ~1% divergent
CC   from
CC   the consensus sequence.
CC   The consensus sequence encodes one 1762-aa BEL13_AGp Bel-like
CC   protein
CC   (pos. 429 5714).
CC   BEL13_AGp is composed of the peptidase A16 (pos. 150-290), RING
CC   Zn-finger (pos. 385-422, reverse transcriptase (pos. 800-930) and
CC   integrase (pos. 1480-1620) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="BEL13_AGp"
FT                 /translation="MSVRRSDVHKTPAESEEWKIAPIDMEEAGPSSEIPAG
FT                 LDEAKEVHRPIDKNQCIRKHFLNKLQRIEEALSGTSLGDTTFLKGCANRLT
FT                 SLASEYEKWHQTVLETADMENFEDGEEEYARFEKRHFNLLLRIERGMSITT
FT                 NVSQSRVKLPELRLPTFDGSLEAWLPFRDSFSSLIDANASLSDVDKLRYLK
FT                 GALTKEANKLIADIEITSANYIVAWELLKARYENKKLAVKRHIDALFLIPV
FT                 MKKDSYESLIHILDSFERSVNITKQLGVATEGWSVLLAHMLHSRLDSATQM
FT                 HWEAHHRSTDVPEYYELLTFLKSHALVLQAMLSPGQKKEQYTSSWKQRSKS
FT                 EVHVVNSSMEICSFCKKGSHSPFKCDMFSGWTVQERYDKVKEKKLCINCLL
FT                 PGHIMKNCTSSVCRVCNKKHHTMLHKPVQTSNSAEASPNDREIVTQPDPPA
FT                 DQNVVTYCGNALLTNSIETPSTILLPTALVKIELPDGSLHWARALLDGGSQ
FT                 INLVTERLCQRLQVIKKRENHPIGGVGQSKHVSSHSTQLTIKSHCTSFKAN
FT                 WKFHVMRYITWNLPAEKVNKTRYCIPNTCTLADPKFYEPSSIDLLIGRESY
FT                 DELMLEGILKLVPEKVMLQNTELGWIVSGRVELERRPTSSIVNLVCTNQDL
FT                 ENQLTKFWEIESCNTNSTMSIEETSCEKVFSETTTRDDQGRFIVTLPTKKD
FT                 IVPQLGNSFEIAKRRLNSLNRRLASNKDLKAAYIAFLEEYVQLGHMEEITE
FT                 QHTNIDTPIYYLPHHCILRPDSLTTKLRVVFDASCATDSGLSLNDALMVGP
FT                 VVQDDLVAIMIRFRLPKFAIVADIEKMYRQVWIKKEDRSLQRILWQNCPEN
FT                 KLRIYELKTITYGTASAPYLATKCLQMLSVHGTSTHPEASRVLANEFYMDD
FT                 LLTGVETQTEGEELCHQLTDLLSSAGFTLRKWASNSSQILQSIPVDQRDTS
FT                 GLCSLDINSSIKTLGLKWIPATDELGFCVPIWTEDEQITKRIALSDASRLY
FT                 DPLGLIGPTIMIAKCFMQNLWALQKAWDEPLEKELHKQWNQFRQQLSIVKD
FT                 MRIPRRVVGSTHRIEIHGFSDASMKAYGACLYMKSVSEDGKVSVNLLCSKS
FT                 RVAPLANSKRQKNVTLPRLELSAALLLCHLWQKVKDSLKHEYSCFYWVDST
FT                 IVLHWINSSPSRWKPFVANRVSEIQHLTEPRHWNHVPGDQNPADIISRGMM
FT                 PSQLQESCLWWHGPEWLSQPSNTWKLHHPILDCPPSEFEERKTVLIINKQS
FT                 NIHHPIFSLKSTFSGLVRLMAYMQRFSYNCKPVNRNNRRQGYLQTFELHAA
FT                 RENLVRIAQNESFADDIRSLETAGEVKTSSSLRSLTPMLVNGVLRIGGRLR
FT                 NAPVAYDRKHPMILPYKHPLTRLVMDFYHLKTLHAGQQLLIASVREKYWPL
FT                 RVRNLARQVVHECIQCFRCKPSTMEQIMGDLPAERVTPTFPFLNTGVDFCG
FT                 PLFYRSASRKSAPVKCYVAVFVCLATKAIHLELVADLSSDAFISTLKRFVA
FT                 RRGKPSLLQCDNAKNFRGAERKLKVFHQQLQQQQFQQSISSYCGPEGIEFR
FT                 FIPPRSPHFGGIWEAAVKSFKHHFRATIGTSILRRDDLETIIAQVESCLNS
FT                 RPLTPISTEPEDLEVLTPGHFLIHRPLVAVPEPSYEEVPSNRLDRYQQNQE
FT                 FVRRIWNRWSTDYLSGLQPRTKWTKQRDNIHIGTLVLMKEDNLPPLKWSYG
FT                 RVTQIYRGDDGNIRVVTVKTKDGEYKRAITKICVLPIHSNTE"
XX
SQ   Sequence 5752 BP; 1667 A; 1200 C; 1313 G; 1572 T; 0 other;
     ttttggtcct tcaaatccgg atatcgtttg aaaatcgtga tctatggtga tctttcgtga        60
     acattcgtac gcctttgtga acagtcgagc attatcgtat gcgttgttca taggtgttcc       120
     tttcgttgta tgcgccttgt tcgtgtggag ttttatcttg ttgttattat ctatggtgat       180
     aatttgaaga cagttcctgt tagaggatac tttgttgaat atcatacaat tgagtgtgat       240
     attgtgcaaa ttcagcttgc tatcgggtat gctgtattag acgcggacaa tttttaggaa       300
     aagatacatt ggtgtgcgtg tacgtgtcgt caggctgtac ctgtttggaa gtgttggtga       360
     gatcgcttcg cagccatttt gaagagcagc atcttaaaaa gtattgtcgg cgcaaatagc       420
     tcaacaaaat gtcggtcagg agaagtgatg tgcacaaaac gccagcggaa tccgaggaat       480
     ggaaaattgc acccattgac atggaagaag ctggaccgtc atcggaaatc cctgcgggtt       540
     tggatgaagc aaaggaagtg catcggccta ttgataaaaa ccaatgtata cgcaagcatt       600
     ttcttaacaa attacagcga atcgaagaag cattgagtgg tacatcgttg ggtgacacga       660
     cgtttctgaa gggatgtgca aatcggctta cctcactggc gtcggagtat gaaaaatggc       720
     atcaaaccgt cttggaaacg gccgatatgg agaattttga ggacggtgag gaggaatatg       780
     cacgattcga aaaacgtcac ttcaacttat tgctacggat tgaacgtggt atgtcgatca       840
     ctacaaatgt ttcgcaatct cgtgtaaagc ttcccgaatt acggctgcca acgtttgatg       900
     gctctctcga agcttggctg ccttttcgcg attcttttag tagcctgatt gatgctaatg       960
     caagcctgtc agatgtggac aaattgcggt atttgaaggg agcattgaca aaggaagcaa      1020
     acaagctaat tgcggacatt gagattactt cggctaatta catagtggca tgggagcttc      1080
     ttaaggctcg ttatgaaaac aaaaagctag cggtgaagcg acatattgat gctttgtttt      1140
     tgataccggt aatgaagaag gattcgtacg agtcgctcat tcacatttta gatagtttcg      1200
     agagaagcgt caacataacg aagcagcttg gtgtggcaac agagggttgg agtgtgcttc      1260
     tggcgcacat gctacattct cggcttgatt cggctactca aatgcattgg gaggctcacc      1320
     atcgcagtac tgacgttcca gaatactatg aacttctaac gttcttgaag agtcatgcgt      1380
     tagtgttgca ggcaatgctg tctccaggcc aaaagaaaga acaatataca tcgtcgtgga      1440
     agcagcgatc gaaaagtgag gtgcacgtgg taaattcttc tatggagata tgctcgtttt      1500
     gtaaaaaagg ttcacattcg ccctttaagt gtgacatgtt tagtggctgg acagtacaag      1560
     agcgctatga caaggtcaaa gaaaagaagc tttgtatcaa ctgtttgttg cctgggcata      1620
     ttatgaagaa ctgtacatct agtgtatgcc gagtttgcaa caaaaaacat cacactatgt      1680
     tgcacaaacc agtacaaacc agtaattcag ctgaagcatc tcctaatgac cgggagatag      1740
     tgacgcaacc ggatccacct gcggatcaga acgtggtcac atactgtggc aatgctttgc      1800
     tgacaaattc gatagaaaca ccatctacta tcctattacc cacagctttg gtgaaaatag      1860
     agttaccaga cggatcgttg cattgggcac gagctctttt agatggagga tcgcagatta      1920
     atcttgtaac tgagcgtttg tgtcagcgat tgcaggtcat taaaaagaga gagaaccatc      1980
     caattggcgg agttggacaa agcaagcatg tatcatcgca ctcgacacag cttaccataa      2040
     aatctcattg cactagcttc aaggcaaatt ggaaatttca tgtaatgcgt tacattactt      2100
     ggaatttacc tgcagagaaa gtgaacaaaa cacgttactg cattcccaac acttgtactc      2160
     tagcagatcc caaattctat gaaccatcat ccatcgattt attgatcggc agagagagct      2220
     atgatgagct gatgctagaa ggtattctta aactggtacc cgagaaagta atgctacaga      2280
     acaccgagtt aggctggatc gtttctggca gggttgagct cgaacgtcgt cctacatcct      2340
     ctatagtaaa tctggtatgt actaatcaag acctagaaaa tcaactaact aaattttggg      2400
     aaatcgaatc ttgtaataca aatagcacca tgtctattga agaaacatca tgtgagaagg      2460
     ttttctctga aacaaccacg cgtgatgatc aaggaaggtt tattgtaacg cttcctacga      2520
     aaaaggatat cgttccacaa ctcggaaact cgtttgaaat cgccaaacgt agattgaact      2580
     cgctaaatcg tcgtcttgca tcaaacaaag accttaaggc tgcttatata gcctttttgg      2640
     aggaatatgt tcaattggga catatggaag aaatcacgga acaacatacg aacattgaca      2700
     cacccattta ttacttaccg catcactgta ttttacgccc tgacagttta actacaaagc      2760
     ttagagtcgt gttcgatgcg tcttgtgcta ccgactccgg cctctcgttg aatgatgcgt      2820
     taatggtggg tccagttgtt caggatgatt tggtcgcaat tatgattcgt tttcgtctgc      2880
     ccaaatttgc aatcgtagcg gacatcgaaa agatgtaccg acaagtatgg attaaaaaag      2940
     aggatcgctc gttacaaaga atcctttggc agaattgtcc cgaaaataag cttcgaatat      3000
     atgagctaaa aacaattacg tatggcactg catctgctcc ttacttagca accaaatgtt      3060
     tgcaaatgct ttccgttcat ggaacttcta ctcatccgga agcctctaga gtactggcaa      3120
     atgaatttta tatggacgac ttgcttaccg gagtagaaac tcaaacagaa ggagaagaat      3180
     tatgccatca actaactgac ttgttgtcga gtgctggttt tactttgaga aaatgggcgt      3240
     ctaactcttc ccaaattctg caaagtattc ccgtagacca acgcgatact tctggattgt      3300
     gcagccttga cataaatagt tccattaaga cattgggtct taaatggatc ccagcgaccg      3360
     atgagttggg attctgcgta ccgatttgga cagaagatga acaaataaca aagcggatag      3420
     ccttatcaga tgcatcgcgt ctatacgatc cattgggact cataggtcca acaataatga      3480
     tagccaaatg ctttatgcaa aatctttggg cactacaaaa ggcatgggat gagccgctag      3540
     aaaaagaatt gcataaacaa tggaatcagt ttcgccaaca gctctcaatt gtgaaagaca      3600
     tgcgtatccc acgtagagtg gtaggaagta cccatcgcat cgaaatccat gggtttagtg      3660
     atgcgtctat gaaggcttat ggagcctgtt tatatatgaa atcggtctct gaggatggaa      3720
     aagtttctgt taaccttttg tgctctaaat ccagagttgc tccactcgca aatagcaaac      3780
     gacagaagaa cgtcacttta cctcggctgg aattatctgc agctttattg ttatgccatc      3840
     tctggcaaaa ggttaaagat agtcttaaac acgagtattc gtgtttctac tgggtggatt      3900
     cgaccatcgt gcttcactgg ataaacagta gcccgtcacg ctggaagcca tttgttgcta      3960
     atcgggtgtc tgaaatccag catctgacgg aacctagaca ttggaatcat gttcctgggg      4020
     atcaaaatcc agctgatatc atctctagag gaatgatgcc gagtcaattg caagaatcat      4080
     gcctatggtg gcatggacca gagtggttaa gccaaccatc caatacttgg aagctacatc      4140
     atccaatact cgattgccca ccctctgagt ttgaagaacg gaagactgtt ctgatcatta      4200
     acaaacagtc taatattcat catccaatat ttagcttaaa atcgacattc tccggactcg      4260
     ttagactgat ggcatatatg caacggttta gctacaactg taaacctgtt aatagaaaca      4320
     atcgtcgtca aggctacctt caaacatttg aactacatgc agcaagagag aatttggtac      4380
     gcattgcaca gaacgaatct tttgctgatg atattcggtc tctcgaaact gctggagaag      4440
     tcaaaacatc gtcatcttta agatcattga caccaatgct tgtaaacggt gtactacgca      4500
     ttgggggacg tcttcgaaat gctcctgttg cttacgatcg gaaacaccca atgatactgc      4560
     cctacaaaca tccattgaca cgtcttgtca tggatttcta tcatcttaaa accttacatg      4620
     ctggacaaca actgttgatt gcttctgttc gagagaaata ctggccttta cgcgttcgaa      4680
     accttgctcg gcaagtagta cacgagtgta tccagtgctt ccgttgtaaa ccatcgacaa      4740
     tggaacagat aatgggagat ttacccgcag aacgagttac tccaactttt ccgttcctga      4800
     acactggtgt cgatttctgt ggaccgctgt tttatcgttc ggcgtccagg aaatctgctc      4860
     cggtgaagtg ctacgttgca gtatttgtgt gcctggccac gaaggctatc catctagaat      4920
     tggtagctga tttgtcgtcg gatgcgttca tatcaacact gaaacgattt gtcgctcgtc      4980
     ggggaaaacc atctcttctt cagtgtgata acgctaaaaa ttttcgtgga gcggaacgaa      5040
     aattgaaagt gtttcatcaa caactgcagc aacaacaatt tcaacaatca atttcgtcgt      5100
     attgcggtcc agaaggtata gagtttcgtt ttatccctcc taggtctccc cactttggtg      5160
     gaatctggga ggccgccgtc aagtctttta agcatcattt tagagctact attggaactt      5220
     cgatcctgcg tcgagacgac ttagaaacga tcatcgccca ggtggaaagc tgcttgaatt      5280
     cgcgcccttt gaccccaatc agcacggaac ccgaggattt ggaggtgctt actccagggc      5340
     atttcctgat ccatcgtcct ctggttgctg ttcctgaacc ttcatacgag gaagtgccat      5400
     ctaatcgcct ggatagatat caacagaatc aggaattcgt gagacgcatt tggaaccgat      5460
     ggagtacaga ctacctgtct ggcttgcagc cccgcacgaa gtggacgaaa caacgggaca      5520
     acattcatat cggaactctc gtgttgatga aggaagacaa cttgccaccg ttgaaatgga      5580
     gttatggacg agtaactcaa atctaccgag gagacgacgg caacatccgc gtggtcacgg      5640
     tgaagacaaa ggacggcgaa tacaaacgag caattacgaa gatctgcgtt ttgcccatcc      5700
     attccaacac ggaataagtg gtggaaattt caatttccac gggggccggc ta              5752
//
ID   TransibN2_AG repbase; DNA   ; ANG   ; 1750 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   12-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   TransibN2_AG is a family of nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; Non-autonomous.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-1750
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology (2005).
XX
CC   [1] (Consensus)
XX
CC   TransibN2_AG is a family of nonautonomous DNA transposons that
CC   belongs to the Transib superfamily. TransibN2_AG elements are
CC   characterized by 14-bp terminal inverted repeats (1 mismatch) and
CC   5-bp target site duplications. This family was active less than 1
CC   million years ago (some copies are less than 1% divergent from
CC   the consensus sequence).
XX
SQ   Sequence 1750 BP; 633 A; 266 C; 261 G; 589 T; 1 other;
     cacaatgggc atttgccggg atgaaattca aaaaatcaac tttgtaatag cgcaattcca        60
     aataataggt tttaatacta agggttaaac taagaaaaat accaaatatg agctctttat       120
     ctgttctggt tctctagaaa acacctctca aagtcgagat ttgttaaaaa aacgcagaaa       180
     aatcttcact tttttggaaa actttaaacc tttgtaactt tttcaaatat gaaccgattt       240
     tgataaattt agacatttta taaaggatat ttagtcagct ttataaacac atgaaaaatt       300
     ttgagctaag ttaattttat gcaaaaatat acgataataa ctgaagaaac ctcctgaaaa       360
     ttttcatmat tttaattttt gacttgatgc cattataaaa gtggcgtaga gtggcgttgt       420
     ctcatatatg tcacatcata gtgtaatata tatactatca atctgtgaag aaatattctg       480
     cgaaagtttg cgaacgcgaa ttttattgaa gttttttcac atcaactttt tctaaaaaca       540
     gacacatgcg taactaggcg gctccatagg tgcctagtgt agcgtatttc gtgtattcta       600
     caaaaatata ttctacgtgc ttttgatcaa ctttcatttc aattacgaag ctgtgtatct       660
     tagtttcagc tcatgtactt atcttatatg taaatttcta ttctaaccta actttatcat       720
     taaatataat gaagcaaatc agaaccaaat accttttggt cctactgcag attatagaag       780
     gatataagga aagtaattct taaattatac gcataacagg aaaacgttat gaatgcagta       840
     gcatctattg gcgttttggg agaagaaact cccaaaactc atgacaaact aaatataagg       900
     atagagggga gatgctacaa agaatatttt gcaagaaaga aaatgcatcc agaaggacat       960
     tttgtataat gagctgtatt cctctgattc gttaaccagt tcaatatcag tagctacacg      1020
     cactaaaaca aagacagggt ttaactttac aaatgaagta aatacttagt ttgtagctat      1080
     cgtgcaattt tgattttttc agatagttgt aaaaccaaga aggattttta gttttattac      1140
     cccttctgaa ggcagtacag cacttggaaa ggtattggat gaatattcaa agacaaacaa      1200
     tatgtgctgc ttttcattac gaatttggga agtactttat ttcaatgcac ctgctctatc      1260
     taattattta aatgccttta ttcatgtctt tagaaaagtg aactagacgt caggagcttg      1320
     taatagcatc cacctaagtt gtgtatgtaa atttttaata tttgtactac ctgtgagtaa      1380
     aagtgacgag aattagctac aattgtccta tacaaagcag aaaaaattat cttattcaaa      1440
     attattatgt tttgtttata tattattatt attattattt atttaatctt cattatggaa      1500
     cattacagta tattttaaaa tggtttatac tattagcaac aaataataca agaaaaaaaa      1560
     cacacaaaat taataaaact aagcaaagat cccttaaaac actattttat gtagcgccac      1620
     ctggtggtat ggatgcgaac tacaaataaa atgttattta ctatcataat actttactac      1680
     aaacgataaa aactaacaat ttctgcaaaa ataattttat cccgcaattt gttctaaact      1740
     gcccattgtg                                                             1750
//
ID   GYPSY67-I_AG repbase; DNA   ; ANG   ; 4715 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY67-I_AG is an internal portion of retrotransposon GYPSY67_AG
DE   - a consensus sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; reverse transcriptase;
KW   AP protease; Gypsy clade; RNase-H; 5-bp TSD gag; mag lineage;
KW   GYPSY67-I_AG; GYPSY67-LTR_AG; integrase GYPSY67_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4715
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY67_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 173-173 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY67_AG is a family of gypsy-like LTR retrotransposons that,
CC   according to the aminoacid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG,
CC   GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY67-I_AG consensus was reconstructed after multiple
CC   alignment of 5 copies. The consensus encodes the 1529-aa
CC   GYPSY67_AGP gag-pol like poliprotein (pos. 117-4703). The
CC   sequence of the LTRs flanking GYPSY67-I is deposited as
CC   GYPSY67-LTR_AG.
CC   GYPSY67_AGP:
CC   MNSGDGAMEVPMDEDQRRSSLGRIDYRAMTAQQTGEVPSVYDPPGHVQPGSRGYVSQQGQLTPR
CC   PVQLGPSPSQPAPSQSAPLPSVQNGQMGQQPLDNAVLQQTLHLLQQQLKQQQQLISQMLQQQQS
CC   APPAQLQPAQQYQPAGPSNPELILDALANSIAEFRYEAESGVTFEAWFTRYEDLFAKDASRLGD
CC   EAKVRLLVRKLGTPEHARYISYILPRSPRDLSFEETVDKLTALFGCRESLLSKRYRCLQICKKR
CC   TEDLIAFSCRVNRACVEFQFASMNEETFKCLMLVCGLKDEADNDLRTRLLARIEERNDVTLEQL
CC   SAECQRITSVKGDSAMIAGETSERVFAVHSGEKRSHEKAAQQTNYKRFTPYRTKRPFRAKYAVC
CC   SSTSKPAKPCWLCGDMHWVRECTYRSHKCLDCARYGHREGHCNTASRKKRFNVRQRNINTRVVT
CC   VNVRSIRERRRFVSIALNGTAVRLQLDTASDISVIDRRTWRKIGSPPLTPSSVTAKTASGATLV
CC   LDGEFSCAVSVGSQTRQATLSVCGAANLLLLGADLIDVFSLWSVPMDAFCNHVTVAGQQSFQQL
CC   FPKVFTGTGLCTKASIKFTLRDNVRPVFRPSRPVAYAMEETVSRELDRLEELNVITPVTTAEWA
CC   APVVVVRKANGLVRICGDYSTGLNAALFPHDYPLPVPEDIFARLANCKVFSKIDLSDAFLQVEI
CC   DPEYRHFLTINTHRGLYTYNRLPPGIKIAPTAFQQLMDIMLSGIQGVSVYLDDIIIGGPSEAEH
CC   DATVVEVLNRIQNYGFTLRAEKCHFRVNQIKYLGHIIDSHGLRPDAQKVEAIRKLPEPTNLTEV
CC   RSFLGAINYYGRFVPNMRNLRYPLDDLLKAGVEFRWTSECRKAFESFKTILASDLLLTHYDPKQ
CC   AIIVSADASSVGLGATISHKYPDGSIRVVQHASRALTAAEKAYSQIDREGLAIIFAIKKFHKMI
CC   FGRKFLLQTDHRPLLRIFGSKKGIPNFTANRLQRFALTLLAYDFEIEYVRTDQFGNADLLSRLI
CC   HTHAKPDEDSVIACVTLEAEVKSLVTSAIQHVPVNFIDISRETIADRLLSKVLQYVQHGWPNNA
CC   AYEGELSRFHDRKDSLTAIDGCLLFRERVVIPKVLQRTCLKQVHLGHPGINRMKAMARSYFYWP
CC   SMDHDIVDWVNSCHSCQIAAKSPTHIKSTSWPEAPGPWYRIHVDYAGPLNGEWYLVIVDSFSKW
CC   PEVIPTSSTTTTATISILRNIFARFGNPVTLVSDNGPQFTSTDFESFCRQNGVEHIRTAPYHPQ
CC   SNGLAERFVDTFKCALRKMSADGLTLREALDTFLQTYRATPNAQLNNSKTPAEIMLGRRPRTLL
CC   ELLLPPRQASQPSAGLRVRELNPGESIYAKEYRLNDWKWVTATVVDRQGRYMYLVRTAEGKTFR
CC   RHINQLRRRISDGSFKDTTRAHSPLPLDLLFDAWHFNPSPVPASSGQLEADKPSSPPAPVSSCV
CC   VPSSNFNIESSRPTLIKCPRRRATSRRTDQTIDSVHEPRRSSRNRRPPSRFDVYRTF.
XX
SQ   Sequence 4715 BP; 1280 A; 1152 C; 1170 G; 1113 T; 0 other;
     gtggcgacga gaatttgttt taaaagttta gtgtctgtaa agtaaaagtc tgtgttttaa        60
     cgtgtaagag tgtttaaaaa aaaaaaaact ccagcatcac gtcgaagcgg cgcaggatga       120
     acagcggaga tggagcgatg gaagtcccga tggatgaaga ccagcgacga tcatcgttag       180
     gccgtatcga ttaccgtgca atgacggccc aacaaaccgg tgaggttcct tccgtgtacg       240
     acccgccggg ccatgttcaa cctggatcgc gcggctacgt gagtcagcaa gggcagttaa       300
     caccgaggcc agtgcagcta ggaccatcgc catcgcaacc agcgccatca cagtcagcac       360
     cattgccatc cgtacaaaat ggccagatgg gtcaacaacc tctggataac gccgtcctgc       420
     agcaaacctt gcacttgctg caacagcaat tgaagcaaca gcaacagtta atttcgcaaa       480
     tgttgcaaca gcagcaatcc gcgccgccag cccagctaca acccgcacag cagtaccagc       540
     ccgccggtcc tagtaaccca gaacttatac tcgatgcttt ggccaatagc atagcagagt       600
     tccggtatga agctgaatct ggtgttacgt tcgaagcttg gttcacacgc tacgaggacc       660
     tgtttgccaa agacgcttcg cggctaggcg atgaggctaa ggtaaggctt ttagtgcgta       720
     agttgggaac accagaacac gcccgttata taagctatat tttaccccgc tcaccacgtg       780
     atttatcgtt tgaggaaacc gtcgataagc tgacagcact ttttgggtgt agagaatctc       840
     tccttagtaa gcgctacaga tgcctccaga tttgtaaaaa gcgcacggaa gatttgatcg       900
     cgttctcttg tcgggtaaac cgagcatgcg tcgagttcca gtttgcgagc atgaacgaag       960
     agaccttcaa gtgcctaatg ctggtgtgtg ggctcaaaga tgaggctgac aatgacctgc      1020
     gaactagact ccttgcgcgc atagaggagc ggaacgacgt tacgcttgaa caattatccg      1080
     cagagtgtca gcgtattaca agtgtgaaag gagacagcgc tatgattgcc ggagagacga      1140
     gtgaacgtgt tttcgcagta cacagcggag agaagagatc gcacgagaaa gcagcgcagc      1200
     aaactaatta caagcggttc acgccgtacc gtaccaaacg accgttccgt gcaaagtatg      1260
     ctgtgtgttc atcaacaagc aagccagcga agccctgttg gttgtgtggt gacatgcact      1320
     gggtgcgtga gtgcacttac cgttcgcaca agtgtctcga ctgtgcaaga tatggtcatc      1380
     gtgagggaca ctgcaacaca gcgagcagga agaagcggtt caatgttcgg caacggaata      1440
     tcaacactcg tgtagtaacg gtcaacgtcc gaagcatacg agagcgccgc agattcgtgt      1500
     ccatcgctct caacggaaca gctgttcgat tgcagctaga cacagcttcg gatatcagtg      1560
     tcatcgaccg ccgtacgtgg agaaaaattg gcagcccgcc tttaacaccg tcatccgtca      1620
     cagctaaaac tgcatcggga gctacactgg tattggatgg tgaattcagc tgtgctgtta      1680
     gtgttggtag ccagacgagg caggcgacac tcagcgtatg cggagcagca aacctactac      1740
     tactgggagc cgatttgatt gatgttttct ccctctggtc ggtgccgatg gatgcgttct      1800
     gcaatcacgt tacagtagca ggacagcaat cgttccagca gctttttccc aaggtgttta      1860
     cgggaacagg actctgtaca aaggcgagta taaaatttac cttgcgagat aatgttcgtc      1920
     ctgtttttag acctagccgc ccagtagctt acgcgatgga ggaaaccgtg agtcgtgagc      1980
     tcgaccgtct tgaggagttg aatgtcatca ctcctgtaac tactgcagaa tgggcagctc      2040
     cagtggtcgt cgtgcgcaaa gccaacggac ttgttcgtat ttgcggcgac tattcgacgg      2100
     gacttaatgc tgcgttattc ccccacgact acccgttacc tgtaccagag gacatttttg      2160
     caaggctggc aaattgcaag gtctttagca aaatagacct gtcagatgca tttttgcaag      2220
     tggaaattga tccagaatac cgtcatttct tgaccataaa tacgcatcga gggctctata      2280
     cgtacaaccg acttccacct ggcattaaga tagctcctac agcctttcag caattgatgg      2340
     acataatgct atccggtatc caaggcgttt cagtgtactt ggatgacatc atcatcggag      2400
     gtccatccga agcggagcac gacgcaaccg tagtagaagt tttgaatcga attcagaact      2460
     acgggttcac actgcgagcg gaaaaatgcc acttcagggt taaccaaatt aaatatttgg      2520
     gccacattat cgacagccat ggattacggc ctgatgcgca gaaggttgaa gctattcgca      2580
     agttaccgga gccaaccaat ttaaccgaag taagatcgtt tttaggggcc ataaactatt      2640
     acggtcggtt tgtacccaac atgagaaatt tgcgctatcc attggacgat ttgttaaagg      2700
     ccggagtcga atttcgctgg acgtcggaat gcagaaaagc ttttgagagc ttcaagacga      2760
     tattggcttc cgatttacta ctaacccatt acgatcctaa acaagcaatc atcgtatctg      2820
     ccgacgcatc atcagttggc ctcggggcga caataagcca taagtatcct gacggatcta      2880
     ttcgggtggt ccagcatgcc tcgcgcgccc tcacagcggc agaaaaagca tacagccaga      2940
     ttgatcgcga gggcttggcc ataatttttg cgataaaaaa atttcataag atgatattcg      3000
     gcagaaagtt tttattacaa acagatcatc ggccgctttt gcgaatattt gggtcgaaaa      3060
     aagggatccc caattttaca gccaatcggt tgcaacgttt cgctcttacc ctactggcat      3120
     atgattttga aatagaatac gttcgcaccg atcagtttgg caacgctgac cttctttccc      3180
     gcctgataca cacacacgcc aagccagacg aagattcagt gatagcatgt gttacattag      3240
     aggcggaagt aaaatcattg gtaactagcg ctattcagca tgttccagtt aattttatcg      3300
     acataagtag agaaaccata gccgacagat tattatccaa agtccttcaa tacgttcaac      3360
     atggatggcc aaataatgca gcttatgaag gagaactgtc gcgcttccat gacagaaaag      3420
     attcgcttac agcaatcgac gggtgtctcc tatttagaga gagggtggta atccccaaag      3480
     tattgcaacg cacctgcttg aaacaggttc atctcgggca cccaggaata aataggatga      3540
     aagccatggc cagaagttat ttttattggc catcaatgga ccatgacatt gtcgattggg      3600
     tgaactcgtg tcattcatgc cagatagcag ctaagtctcc aactcacatc aagtcgacca      3660
     gctggccaga agcaccaggt ccgtggtacc gcattcatgt cgactacgcg ggaccactca      3720
     acggggaatg gtacctggtg attgtcgatt cgttctccaa gtggccagaa gtgattccaa      3780
     cgagcagtac aacaacaacg gcaacgataa gtatactgcg taacatattt gctcgttttg      3840
     gcaacccagt aacacttgtg tcggataatg gtccacaatt cactagcaca gattttgaat      3900
     ctttttgtag gcaaaatggg gttgagcaca tcaggacagc gccgtatcac ccgcaatcca      3960
     acgggctggc tgaaaggttt gtcgacacct ttaagtgcgc tttgaggaag atgtcagccg      4020
     atggtctcac gttacgagaa gctctggaca ccttcttgca gacctatcgg gccaccccga      4080
     acgctcagct gaataattcg aaaactcctg ccgagattat gctaggcagg cgtcccagga      4140
     ccttgctaga gctgttattg ccgccacgtc aagcttcaca accgagtgct ggtctacgag      4200
     ttcgtgagct gaatcccggt gagtcgatct acgctaagga gtaccgcctg aacgattgga      4260
     aatgggtcac tgctacggtg gtcgatcggc aaggcagata catgtacctg gttcggactg      4320
     ctgaggggaa gacgttccgt cgacacatta atcagctacg tcggcgtatc agcgacggtt      4380
     cgtttaagga cacaacacgg gcccattcac cactaccttt ggatctgtta ttcgatgctt      4440
     ggcactttaa tccgtcacca gtacctgcat catcgggcca gctagaagct gataaaccgt      4500
     cctcaccgcc agcgcctgtg tcgtcctgtg ttgtaccatc tagtaatttt aatattgaga      4560
     gcagccgtcc aacactcatc aaatgtccac gaagaagagc tacatcccgc agaacggatc      4620
     aaacaatcga ttcggtacat gaaccacgtc gctcttctcg caacagaaga ccgcccagtc      4680
     ggttcgatgt gtaccgaacg ttttaaggag ggaga                                 4715
//
ID   HELITRON1_AG repbase; DNA   ; ANG   ; 6666 BP.
XX
AC   .
XX
DT   11-NOV-2002 (Rel. 7.1, Created)
DT   11-NOV-2002 (Rel. 7.1, Last updated, Version 1)
XX
DE   HELITRON1_AG, a rolling-circle DNA transposon - a consensus
DE   sequence.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; HELITRON class;
KW   HELITRON1_AG; Rep/helicase.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-6666
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON1_AG, a rolling-circle DNA transposon from African
RT   malaria mosquito.";
RL   Repbase Reports 2(10), 8-8 (2002).
XX
CC   [1] (Consensus)
XX
CC   HELITRON1_AG is a first example of HELITRONs (a rolling-circle
CC   DNA transposons) present in insects. The A. gambiae genome
CC   contains many families of HELITRONs. HELITRON1_AF is one of them.
CC   A defective copy of a HELITRON-like element is also present
CC   in the D. melanogaster genome (AE002840, positions 9827-9264).
CC   HELITRON1_AG has all basic hallmarks of HELITRONs: it is
CC   flanked by 5'-TC and CTAG-3', is inserted into the AT target
CC   site and encodes a 1792-aa HELITRON-like Rep/Helicase protein,
CC   called AGHEL1p.
CC   AGHEL1p (positions 820-6195):
CC   MQPSVSDIVSQNLTPPEETPNEKKARLQRKRQALYRAKKRLPGAAPTLAAVQDDQQAVPSTLAGSSLSAA
CC   SAILQQQQRRNTDDELLNEIAGRYSTPPDETPPEKKARLARKRQALYRAKKRLAGAAPTVAAVQDDQQAV
CC   PSTSAGTSLSGAPAILQQQQLRRNIDDDLLNEIAGRYSTPPDETPPEKKARLARKRQALYNARKRMVQTP
CC   NVATVVNRAPAPASAPVPAPAPAPTPALVDPTAAVAIRVPIHQQLQTYVRHLRDHEADQQRQFIARRRMT
CC   GHLRVAHGNHESYSCPSLHTLAPRVPCNFCSALKWPGEPPSVCCNSGQVVLPPFPEPPAELRQLFDVPQF
CC   LLNIRRYNNAFAFTSIGASIRGNDPVRQDLRVGHGGIYNYRIQGALCHRIGSLAVLPGRPPCYAQLYFYD
CC   SSSEGQYDEMLNARAKAYGSELNREILAILQRVFSTHNPIAEMFKHAYERMSVRDDLRLCIHSRIPGIDQ
CC   RRYNAPTADEVGGVFVCDDTTGATEHTRDIVLQHRATGYLQPVFDTNQLADALQYPILFPRGETGWTYGM
CC   PKVQRRTRQQQQPSRPTSSSNGAAHIDENDDAAEDPNPELDGAERSANQITPREYAAYRIAWRENAQTLM
CC   HRAGRLFQQYCVDQYCKIEMQRLKYLREHQAQLRTEAYTGFMDLAGAEGTIADLHPDNLPNVAVEIPVVQ
CC   EPPVAPRRSIIDPPSNLSRTGTRVILGPSFVGSNRYMRAQYQDAMAIVRALGKPDLFITVTCNPKWPEIT
CC   QCLLPRQQAPDRPDVIVRVFRLKLKAILNDLTMGALGIEVARIHVIEFQKRGLPHAHILVILAEEDKPQT
CC   PADYDKIVSAELPNPATSSQLFETVQSCMMHGPCGAANPAAPCMKDGTCEKGFPKSFCEQTRSMDNGYPQ
CC   YRRRNNGRSVTVKGIELDNRYVVPYNPWFTHKYNCHINVEVCTSISSVKYLYKYVYKGHDRLSVTLAVGN
CC   DEIQQHIDARYLSPTDSCWRIMRFELQAKTHTVVTLPIHLENQQNVFFRANETVSCVLNRGNHTMLTRFF
CC   QLAAHDNFARALLYHDVPTYYRYAKPTANQRLPWQEPGTKHWIRRIRTGHKTVIGRMVSCSMQLMERYCL
CC   RLLLCYRKGPTSYEDLRTVNGSVCETFQQAAINEGLLEDDSEWDRALEEAATYRMPAQLRHFFALILSSG
CC   MPQNPRTLWESYASEMSEDFHHRNRDRYTTEESDLNKLLRDVEHFRALSDIDRYLRGTTPSKVLTSSPGM
CC   PQLSEYEHVQAHIMDDDDVNEFIIAERSYLITDLDATLATVHQLNDEQRMVYETVTAAIDRQLATAASQA
CC   NAGDQRLFFLDGPGGTGKSFLVEKILAHVRRCGEIALATAASGIAALLLTGGKTVHSTFKLPLDLNNHST
CC   CSITVQSKRAEMLRQTALIVWDEASMSSRFALEAVDRTLQDITGVQLPFGGKVVLLSGDFRQILPIVPKG
CC   TDAQIINECIKKSTLWPLFRSLQLRDNMRVRTAPNANQASELRDFANLLLRIGEGRHDTFAGLDPSLAKI
CC   PHDMIVPHTANPTNDLNTLIDKIYPDMQRHFQHPSFFSDRAILSPLNVDVASVNNLVLDRIPGPEQEYRS
CC   VDTLVNPEEHEHLQLPSEYLNTLNVSGIPVHRLRLKRFAPVLLLRNLNSDMGLCNGTRLQIVGLKRNCLH
CC   AKILTGTRRGEDVLLPRIFCDSNDKGHPFQIRRKQFPVQVCFAMTINKSQGQSLHHLGLYLPQDVFAHGQ
CC   LYVALSRVTSRANIAVLIPNPKRADEEGVSTSNIVYREVVDR.
XX
SQ   Sequence 6666 BP; 1706 A; 1761 C; 1639 G; 1560 T; 0 other;
     tctatatata aattttcgtt aacgctgacg ctcgatgtca cactttgcgt tacgctgttt        60
     ctatctcgcc cgttctgcct tcgctgccgt ataacaccat cacgctcgca cgaccgcacg       120
     acgaataccc ctaccatcgt gagcacgacc aacgctgcag gggtgctcaa ccgtttcctc       180
     gctttccgaa ctcgaccgag cagtgcgcac actatcgact cgcccttgcg agcccctgcc       240
     agcgcatgcg cgtacgagca agcgagcgag cgagcgaacg atcgagttgg ctacgcgata       300
     tgatatattt tttgacaaaa cgaatatcgt ttattaatac ggttataggt gcgatttaca       360
     cttttttaag ttgatttcca gtttttttag tttagtttga gtattaggtt aatttcttta       420
     ggtgcgcatg gtgaagtata gtgtagtgta gtttagaaaa gtgttgtgta ttgtagtgta       480
     gtttagtacg cagggcagtg tagatttagt gtaaggagat tattttcgta acgtacgttt       540
     cgtgtacgtt ttgtggttca atttgttgtt cctgcgtgga acgtgtgttc ctgtgttcct       600
     gtgttcctgt gtttctgtgt tccggcgttt tcttgcaatt ctgtttttgc tacgatatgg       660
     agcataatga ggaaagtgtg ggcaacggtt gccctatgat tgacatcatg tcaggtataa       720
     tatttcctac tttcttttat tcacagcact tatctaaaat tctttttttt tgttttacaa       780
     ttttcaacag ccccagttac agaaccctat ccacaaacca tgcagccctc cgtaagtgat       840
     atcgtctcac agaatctcac tccaccggaa gaaactccga acgaaaagaa agcaaggctt       900
     caaaggaagc gacaggcgtt gtacagggcc aagaagcgcc tcccgggtgc agctcctacg       960
     ctggcagctg tacaggacga ccaacaggct gtaccttcaa ctttggccgg gtcatcctta      1020
     tcagcagctt ctgcaatcct gcaacaacaa caacgaagga atacggacga cgaattgctc      1080
     aatgaaatcg ctggacgata ctccacccca ccggatgaaa caccacccga gaagaaggca      1140
     aggctcgcca gaaagcgaca agcgctgtac agggccaaga agcgcctcgc gggagcagct      1200
     cctacggtgg cagctgtaca ggacgaccaa caggctgtac cgtctacttc ggccgggaca      1260
     tccttatcag gagctccagc aatcttgcaa caacaacaac tacgaaggaa tattgacgat      1320
     gatttgctca atgaaatcgc tggacggtac tccaccccac cggatgaaac accacccgag      1380
     aagaaggcaa ggctcgccag aaagcgacag gcactgtaca atgccaggaa gcgcatggtg      1440
     caaactccga atgtcgcaac tgtggtcaac cgcgccccag caccagcatc agcaccagta      1500
     ccagcaccag caccagcacc aacaccagca ttggtagacc caactgcagc agttgctatc      1560
     cgagtgccaa tacatcagca gctacaaaca tacgtgcgcc atcttcgcga ccatgaagca      1620
     gatcagcagc gacaattcat agcccggcgt cgtatgaccg gccatctgag agtagcacat      1680
     gggaaccatg agtcgtacag ttgtccctcg cttcatacgc ttgcaccacg cgtaccttgc      1740
     aatttctgtt ccgctctcaa gtggcctgga gagccgccca gtgtgtgctg caacagtgga      1800
     caagttgtgc ttccaccgtt tcccgaaccg ccagcagagt tgcgccaact atttgacgtg      1860
     ccgcaatttc tgctcaacat ccggcgatac aataatgcgt ttgccttcac ctctatcggt      1920
     gcctcaatac gaggaaatga cccagtacgc caggatctac gagtcggtca cggtggaatt      1980
     tacaactatc gcatacaagg tgcgctttgc catcgaatcg gttcgctcgc tgtgcttcca      2040
     ggacgtccac catgctacgc acagctgtac ttttatgatt caagctcgga gggtcagtac      2100
     gacgaaatgc tgaacgctcg ggccaaagca tatggtagtg agctgaatcg tgaaatattg      2160
     gccattttgc aacgtgtttt ttcgactcac aatccgattg cagagatgtt taagcatgcg      2220
     tacgaacgga tgtctgttcg agatgatctg cggctttgca tccactcgcg tataccaggc      2280
     atcgatcaac ggcgttacaa tgcaccgact gcagatgaag ttggtggcgt gttcgtgtgc      2340
     gatgatacta ccggagccac ggaacataca cgcgatattg tgctgcagca tcgtgccaca      2400
     ggatacttgc agcctgtgtt tgataccaac cagttggcag atgcactcca atacccgatt      2460
     ctgtttccgc ggggtgaaac cggttggact tacggtatgc caaaggtaca gcgccgaacc      2520
     agacagcagc aacaaccaag cagaccaaca agttcgagca acggagcggc gcacatagat      2580
     gaaaatgatg atgctgctga ggatcctaat cctgagttgg atggagcaga gcgttcagca      2640
     aatcaaataa cgccacgcga atatgccgca tatcgcatag cctggcggga aaacgctcaa      2700
     acgcttatgc atcgtgccgg acgattgttt cagcagtact gtgtagacca gtactgtaag      2760
     atagagatgc agcggttgaa atatttgcga gagcaccagg cacaacttcg cactgaggcg      2820
     tacacgggct ttatggatct tgccggcgct gaaggtacca tcgcggatct tcatcccgat      2880
     aatttgccta atgtggctgt ggaaatccct gtagtgcaag aaccacctgt tgcaccccgt      2940
     cgttccatca tcgatccgcc ctcgaacctg tcgcgtacgg gcacgcgtgt tattctcgga      3000
     ccatcatttg tcggtagcaa tcgatatatg cgagcgcaat atcaagacgc aatggctatt      3060
     gttcgagctt tgggtaaacc ggacctgttt atcaccgtca cgtgcaatcc gaagtggccg      3120
     gaaatcacac agtgcctact tccacgtcag caggccccgg atcgacccga tgttatcgta      3180
     cgtgtctttc ggttaaagct gaaagccata ctgaatgacc taaccatggg agctctcggg      3240
     attgaggtag ctcgcattca cgtgatcgag ttccaaaaac gtggccttcc ccatgcacac      3300
     atactcgtga ttctcgccga ggaagacaaa ccgcagaccc cggcagacta cgacaagatc      3360
     gtgtctgccg aacttcctaa tcctgcaacg tcgtcgcaac tgttcgagac ggtacagagc      3420
     tgtatgatgc atggaccgtg tggggctgcc aatcctgccg caccttgcat gaaggatggt      3480
     acatgcgaaa aagggttccc aaagtcattc tgcgaacaga cgcgcagcat ggataatggc      3540
     tatccacagt accgtcgtcg taacaatggg cgcagtgtga cggtgaaagg aatcgagctg      3600
     gacaaccggt acgtcgtgcc ctacaaccca tggttcacgc ataagtacaa ttgccacatc      3660
     aacgttgagg tgtgtacttc gatcagcagc gtgaaatatt tgtacaaata cgtgtacaag      3720
     gggcacgacc gtctgagcgt taccctggcg gtaggcaacg atgaaattca gcagcatatc      3780
     gatgcacgct acctttcacc gacggacagc tgctggcgaa taatgcgctt tgagttgcaa      3840
     gcaaaaacgc acaccgttgt tacactgcct atccatctgg aaaatcaaca gaacgtgttt      3900
     ttccgggcaa acgaaaccgt ttcgtgcgtg ttaaaccgtg gtaaccatac catgttgaca      3960
     cgattcttcc agctggcggc acatgacaac tttgccagag cgctgctgta ccacgatgtc      4020
     ccgacgtact accggtacgc gaaaccaact gcgaaccagc gactaccgtg gcaggaaccg      4080
     ggaacaaagc actggatccg tcgcatacgt accgggcaca agacagtgat cggccgaatg      4140
     gtgtcctgta gcatgcagct tatggaacgc tactgcttgc ggttgcttct ttgctaccgc      4200
     aagggtccaa catcgtacga ggatctgcgt actgttaacg gttcggtgtg cgaaacgttt      4260
     cagcaggctg ccatcaacga agggctgctt gaggatgatt ccgagtggga tcgtgctcta      4320
     gaagaagcgg ccacttatcg tatgcccgcc cagttgcgcc atttcttcgc actcatcctt      4380
     tcgtctggga tgccacaaaa cccgcgcacc ctgtgggaaa gctatgcgag tgaaatgagt      4440
     gaagattttc accaccgcaa tcgcgaccgg tacacgacgg aggaatccga cctgaataag      4500
     ctgctacgtg atgttgaaca cttccgggcg ctgagtgaca tcgatcgcta cctgcgcggt      4560
     acgacgccat cgaaggtttt gaccagttcc ccaggaatgc ctcagctttc ggagtatgaa      4620
     cacgttcagg cacacatcat ggacgatgat gatgtcaacg agttcattat cgctgaacga      4680
     tcgtatctga tcacggatct cgatgctacc cttgccaccg tacatcagct caacgacgaa      4740
     caacgcatgg tgtacgaaac ggtcacggcg gcaatcgatc gtcaattagc gacggcggca      4800
     agccaagcga acgctggtga ccaacggtta ttcttcctgg atggccctgg tggaacgggt      4860
     aaatcttttt tggtagaaaa gatactggca cacgtccgtc gctgcggaga aattgcgctc      4920
     gcaactgcag caagcggcat agcagcactg ttgcttacag gagggaaaac agtacactcc      4980
     acgtttaagt tgccgctgga cttaaacaat cattccacct gtagcattac ggttcagtcg      5040
     aaacgggccg aaatgcttcg acaaacagca ctgatcgttt gggatgaggc gtcgatgagc      5100
     agtcggtttg ctctcgaagc agtcgatcgg accctgcagg acataacggg tgtgcagctt      5160
     cctttcggcg gtaaggtggt gctgctgtcc ggtgactttc ggcaaatttt accgatcgta      5220
     ccgaagggca cggatgcaca aatcatcaac gagtgcatca agaagagcac attatggccc      5280
     ctgtttaggt cgctacaatt gcgcgataac atgcgggtac gcacggcacc aaacgcgaac      5340
     caagccagtg agttgcgaga ttttgccaac cttctgcttc gtatcggtga aggacggcac      5400
     gatacgtttg caggactgga tccatcgttg gcaaaaatac cgcacgatat gattgtgccc      5460
     catactgcga atccgacaaa cgaccttaac accctgatcg acaaaatcta cccggacatg      5520
     caacggcact tccaacatcc gtcattcttt tcggatcggg ctattctgtc gccgcttaac      5580
     gtggatgttg ccagcgtgaa caacctggtc ctagaccgaa ttcctggacc ggaacaggag      5640
     taccgttcgg tcgatacatt ggtcaacccg gaggaacacg agcatctgca acttccttcc      5700
     gaatacttga acacactcaa tgtcagcggc atcccagtgc atcgcttgcg gctgaaacga      5760
     tttgcaccag tacttttatt gcgcaatctt aattccgaca tgggattgtg taacggtacg      5820
     cgtttgcaaa ttgtaggcct aaagcgaaac tgtttacacg ctaaaattct gacaggcacg      5880
     cggagaggcg aagacgtcct gcttccacgg atcttctgtg acagcaacga taagggtcac      5940
     ccgttccaga tccgccgtaa acagtttccg gtgcaagtgt gctttgcgat gaccatcaac      6000
     aagtcgcaag ggcaatcgct tcaccatttg ggcctatatc tgccgcaaga tgttttcgcc      6060
     catggccagc tatacgttgc actctcgcgg gtgacatcac gagcgaacat tgctgtgctg      6120
     ataccgaacc cgaaacgcgc tgacgaggaa ggtgtctcca caagcaacat cgtctaccga      6180
     gaggtcgttg acagatgatt cttctactga accagagtgt gacgtaatta ctgaaaacag      6240
     aaaattagac attacataaa tataaatatc cattctttca gtttgaaccg gctattcact      6300
     aacaatacat ctaccagaac ctagaacaag acggcagcaa aatacaaaca atacatgtgt      6360
     acatcttcct tggctatcct tactgcattt tcgtttcatg cagcgcctgc aaccaaaacg      6420
     atcacgtaaa cgacgggaca atcaattgaa cttccatgct ggaaggtgga gctttacttc      6480
     atgcaccacg ttccatgcgc acctgacttt gactgaacac cccacatttc caggctctcc      6540
     agcaatcttt ccttggaatg ccatgagact tccaatttcc acgaggaacg aggtggcatg      6600
     ctccagttgt ttctgtgcag cctggagttt ccgtgcgtag cactgtaacc gggcctctta      6660
     agctag                                                                 6666
//
ID   T1_AG       repbase; DNA   ; ANG   ; 4634 BP.
XX
AC   M93689;
XX
DT   22-1995 (Rel. 2, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Anopheles gambiae T1 retroposon.
XX
KW   reverse transcriptase; retroposon; Transpsoson; AGT1; T1_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4634
RA   Besansky J.N.;
RT   "A retrotransposable element from the mosquito Anopheles
RT   gambiae.";
RL   Mol. Cell. Biol 10, 863-871 (1990).
XX
DR   GenBank; M93689; Positions       1    4634.
XX
SQ   Sequence 4634 BP; 1059 A; 1101 C; 880 G; 1593 T; 1 other;
     agagagagat cgactgtcaa accgagtggt tgtgccttcc ttgtgctcct gatttttgat        60
     gctgttttgc cgtgttactg cctgattttc aacatttgca acattggtgc tgctgagttg       120
     cttgtactgg ctagtgcgtg ccttcgattg ttatcaagtt gcacttgaat tcttgcacct       180
     agtctcctgt tatttcgtca gttttgccga gatattgttt ggcttcgttc ctgctcctgt       240
     cactcgtcag tttgtgctgt gtcattcgtt atgcagtgct caacctgcaa tgcacccacc       300
     gatagtgcaa attcggtgtc ctgcgccggt gtgtgtggct ccaagcatca tacccattgc       360
     acgggtttgt cccgtgattc tactcgagag cttgggcgga ataatcaatt gttgtggttg       420
     tgcaaaaatt gtaacgagtt tcgcaatggc acaaactcac ttctcacaag tgagatagca       480
     gccctactcg agttggtgaa agcagaaatt ctcaccacga ttgactcatc tctctcttct       540
     cttagatcgg ctatcaagag cgatttgctt gctgagatcc tcgctctcgc tgataagcta       600
     acacccgtat tagctaagcc gtctgtttct cagccatcgc gaacgcacac gtccactaat       660
     gcatcgtcac tcaacgccac taataccaga acgactaaaa cagcatccac tcgccgtaca       720
     tttaccaact caatggagct cactgcagat atccaacaag cagcgaacga taccaacact       780
     gtggaagctt ctgatagctg caaccactac actcatcgta ctaaggtgac tagtgatatt       840
     agtgctgggc catgccgaac aaatacaaaa tcatcttctg atcctgtttt gaaccatgat       900
     accacgaaca ctggcatagc agaaaaagta tggttatact tcacgaacat caaatcgcat       960
     gtctccgctg atgatatgcg tgtgtggctt aaagctgtgc tgccaaccga caacatagat      1020
     gtttaccgtc tcacgaaaaa gggtgcaaac cttgatttga tgtcctttat atcgtttaaa      1080
     gtgagtattc ctaaatcact taaggatctg gcgcttcaat ctactatttg gccagtttca      1140
     cttactgttc gtgagtttgt tgatcgtggc ctaccaaagc aacgtataca tgaaagggcc      1200
     cgatttgacc cttctgcgct tacttcgcat cgttcaagca gtgcaaattg ctcttcagct      1260
     gcgccaaaaa gcaccgctca tccggatcat tttttggatc atcgatcgcc atccccacag      1320
     cgcgggaatc aatcactatc ccagatgacc gagatcctag aggctatcca accggagttt      1380
     cctcccacac cccctcagtt atcaccgggg gtggggcttc aatcacagaa caatctcagc      1440
     aacacgaatc gctcaccaca gatcagcccg tttgccaaac ggatagctca caattaatag      1500
     acccttcgtg atctattacc aaaatgttcg aggccttcgc accaaatata atgaattgcg      1560
     cctttctgcg aatgaatcag ggtttgaaat gcttgccctt actgaaacct ggttaaatga      1620
     atcgattcca tccaatatgg tcctggatag tgattcttac aatatatacc gttgcgatcg      1680
     cagcaggtta aacaatgaac gatcgcgtgg gggtggtgtg ctgcttgcat gttccagtcg      1740
     ttatccgtct gtggcactta acatgaatca acctacgctt gaagctttat gtattcgtgt      1800
     ttcttttcct aagtttcgtc tttatgtggg gattgtttat gtgccaccgt atttgagcag      1860
     cgaccgcaac tatttcgaat ccctttctgc tttcatcagn gatgcataca tgcatatgaa      1920
     accgaatgat catcttatcc ttcttggcga cttcaatcaa ccggcgttag ggtggtcgcc      1980
     tgcagccgca gtaaggtcag attcatcttt acctatgaga cattatgtgc cacatatctc      2040
     tttgaattca tccagttcct gctttttgga tgtgttaaat ttgcatgaac tctatcagct      2100
     gaacggggtg cataaccatt caaatcatta tctggacctg gtgctctcta actctgctgc      2160
     tgctgcttgt tcttctgtgt atcctgcttc gtcactgctc ctgccccagg atgcccatca      2220
     tcctgctctg gaaattgcgt taccgtcttc tttatttagg gctagtaggg ttaggaatga      2280
     attgccttct gctcctaatt cattgagtgt tcgttataat tttcgtctta cagactatcg      2340
     taaacttaat tctattctat ctcgtgccga ctggtctttt ttttatcaat gtacatcggt      2400
     cgacgaggct gtccaatcgt ttaatgcttt gttaacctct gcactccttt catgtacacc      2460
     tatttttcgt tcccctccta atcctccctg gtccaatcgt actcttcgca acctgaaaaa      2520
     ggatagaatg aaatatctta ggaggtatcg tctgaaccga tctgctttca actttcgttt      2580
     atttaagtac gctgcctctg cgcatcgact atacaacagg gctcgttttg aggcctattc      2640
     gagtagactg caatcgcgtt tccgttctga tccagcatcc ttctggcaat ttgttaggat      2700
     tcgaagaggg tgcaatacgt tacctaatga aatggtactt gattctcgaa ctgcctctac      2760
     gcctgttgag atctgtgagc tattctctgc acatttttcc caaatgtttg agccaccggt      2820
     tagtgaccct aaccttattg agggtgggct actctacacg ccagagaact taattaatct      2880
     ctccgatatt tcggttagct ctgaaacagt tgtacaggtg ttatttgggt tgaaacgttc      2940
     ttttactcct ggtccagatg gcattcctgc ctcagtttta ataaactgta aggacgtgct      3000
     tgctccacac cttgctaaaa ttttcaacct ttcactttct ctcggggtct ttcctgctct      3060
     ttggaaatcc tgttggcttt ttccggtaca caaaaaggga tgccgtagca ttgtctctaa      3120
     ttatcgtggg ataactcaaa catgtgccac agccaaaact tttgagctat gtatctttcc      3180
     aaccatactt catagttgta gttccgctat tagccctaaa cagcatgggt ttatgcctgg      3240
     taggtctact tctactaatc tcatgtcttt tgttaccaat attttcagat cttttgaggc      3300
     aggtacccaa cttgatgcaa tatacactga ctttcatgct gcatttgata gtttgcccca      3360
     ctctttacta ttagctaaac tatctaaact tggttttggt gatggcatta ttagctggct      3420
     gtcctcatac ttaagtaatc gatcttgcag ggttaaaacc gggtcgtact tatctgagga      3480
     gtttttttgt acgtcaggtg tccctcaggg ttgtgtgcta agtccacttc tgttttcttt      3540
     gttcatcaat gatgtctgta atgttttacc tcctgatggt catctccttt atgcggatga      3600
     tatcaaaatc tttttacctg tgtcctcttc ttctgattgt atgagtcttc agcattacct      3660
     taatgcattt gttcattggt gttcatccaa cttacttcgc ttgtgccctg ataaatgttc      3720
     tgttatttct ttctctcact ctctttctcc tatttcattt aactatactc tctctaactc      3780
     gtctctctct cgtgttttgt ccatccgtga ccttggtatt atactcgaca gtcgtcttaa      3840
     ctttaaactg cagcttgatg aggttctact aaaagctaat cgaactcttg ggtttatttt      3900
     acgttttacc tctattttta gagatcaaag cttcttaaga aacctttatt atgctctggt      3960
     aaggcctctt cttgaatatg ctagcatcat ctggaatcct cctactattg atggctgttc      4020
     gagaattgaa agcattcagc gcctttttac cagggttgct tttcgtcgtt tgttcggtgc      4080
     tgcctcacta cctccctatg aaacgcgatt gcagttattc aatcttcact ctttaagctt      4140
     ccgccgccaa gtgtctcagg catgttttat tggtggctta ttactttctg atactgatgc      4200
     tcctgattta ctctcgtcca tctcgttgta tgttccctct cgttcccttc gtcctcgtga      4260
     tcctctgtca attgaaacac gtcatactct ttatactttc aatgatccta ttctatcctg      4320
     tttcaggttg tttaaccact tttactatct ctttgatttc gactcctctc tcaactcttt      4380
     ccgtaaccgt attttttctt ctaattctct ttaattattc ttctaagttt cattaagttt      4440
     tgatagtctc tacgctctac ctatgttttt ttttctttaa tttttttgct aggtctagac      4500
     tagtttagtt aggcttagtt tttcatgaat tattttgttt atttgttagg gtttatttag      4560
     ttttaagtct gccttattta gccttgatgg cggatattgt attaataaat gaaatgaaat      4620
     gaaatgaaat gaaa                                                        4634
//
ID   GYPSY4-LTR_AG repbase; DNA   ; ANG   ; 270 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY4-LTR_AG is an LTR of the GYPSY4_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; 4-bp TSD;
KW   Gyspy clade; GYPSY4-I_AG; GYPSY4-LTR_AG; GYPSY4_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-270
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "GYPSY4_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 78-78 (2003).
XX
CC   [1] (Consensus)
XX
CC   GYPSY4-LTR is a long terminal repeat of GYPSY4_AG (its internal
CC   portion is deposited as GYPSY4-I_AG).
XX
SQ   Sequence 270 BP; 74 A; 73 C; 53 G; 70 T; 0 other;
     tgtaacgtcc ggactaatat cgcccactgt cactcaaccc gaaccccgaa cgcagcggta        60
     taaacgcatt ataccttgac cgctggagca cccggtgtgc tagatgaact gtcatagaat       120
     aaagctctct tcttggcgcg acattgaact gaacagacgt aagccactga cttctgcgta       180
     taattatttg tgtgctcttc cgaattgtgc taaatcttat taaaacggcc aattaacctt       240
     ccgccaaccg taaaacgctt ggtcgttaca                                        270
//
ID   BEL1-I_AG   repbase; DNA   ; ANG   ; 7959 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   BEL1-I_AG is an internal portion of the BEL1_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; env; integrase;
KW   5-bp TSD; BEL1-I_AG; BEL1-LTR_AG; BEL1_AG; Bel clade;
KW   PHD zinc finger.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-7959
RA   Kapitonov V.V., Jurka J.;
RT   "BEL1_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 8-8 (2003).
XX
CC   [1] (Consensus)
XX
CC   BEL1_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL1-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL1-LTR_AG
CC   LTRs. The BEL1-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~20 copies.
CC   The consensus sequence encodes two proteins: a 1771-aa
CC   BEL1-I_AG-ORF1p
CC   (positions 1204-6516) and 502-aa BEL1-I_AG-ORF2p (positions
CC   6452-7957). BEL1-I_AG_ORF1p is composed of the PDH domain (aa
CC   positions
CC   13-54), reverse transcriptase (aa positions 745-900) and
CC   integrase
CC   (aa positions 1421-1569).
CC   BEL1-I_AG-ORF2p is a putative env-like protein. It is distantly
CC   similar to the env-like proteins encoded by Tom and Ted
CC   retrotransposons
CC   from Drosophila ananassae and Trichoplusia ni, respectively.
CC   Some copies of BEL1_AG are nearly identical to each other.
CC   Therefore,
CC   BEL1_AG can be still active.
XX
SQ   Sequence 7959 BP; 2873 A; 1648 C; 1673 G; 1764 T; 1 other;
     tggtggctcc agagaggact agtagagacc tcgcaacgta caagtcggag gttaacttcc        60
     gatcttgaaa cccagagtcg gcaggaacat acaagtcgga ggttagcttc cgatcttgac       120
     gaacgtattc ctgaccgata gagaaaaaca accagcgctc caacggagga aggttcgtaa       180
     aagcggaaaa catcgcgaat gtataatagt atccaaaaac gtaaagtgca acaaaccaaa       240
     cgagtgcaaa aaacgcctga aacagtgctt aagaagtcca aggtacagag acagaattca       300
     gtaaggcgcc gtacgatcac cgatatattg tgattgaata aagacaccgg tggcaaaaaa       360
     aaaaaacgac gttcgctata tcgtttcggt cgtaccacag gtttgtaaac aaaacaaaaa       420
     gggtgtgtgt gtgcagtgaa aaaaaaaaaa aaaaaaaaaa aacgacgttc gctatatcgt       480
     ttcggtcgta ccacaggttt gtaaacaaaa caaaaagggt gtgtgtgtgc agtgaaacgc       540
     aacctcagaa agggcgttta aaacggacga cctgagaaca tctgatcgaa aatcattacg       600
     tagcgtacta gtaacaaagt gcagtgtaaa caattacgcg tgtggcacac attcgcagtg       660
     agaacgtaat aaaacccaca agacgctaac gaccgcggtt tacggacgtt cccgtaaagc       720
     accggcagtg tactccaatt acaacaacac aagtaaatgt gcggatcaag aaaagatcaa       780
     cagttgggga gtgtaacaat acgggacgtg catacaaaaa agaaatcttc gagctaaacc       840
     gtatccggct ttagcatttc cgggaaacca caaacataaa ggtgttgata agagtgcgaa       900
     ctagtggagt agtacgtgtc cagcttattg acgtgtgttg atacggtgat cggtagccaa       960
     tggtcatcgc cccggaagac ccgattatcc aacgaaaaag cgtggcggca atactaccca      1020
     agcagcggat ctgaaggcga ccagaagaca ggggtactga cgacaccgcg ggggatcacc      1080
     tgaagacgac ctcgaggagg acaagcaggg gcgttgtaag agcagcaacg gcacgacgac      1140
     acccatccag atcggcagcg acagcccagt tactttatcc accggttacg caaagtgagt      1200
     agtatggata tcatatttaa aagcaacccg aaaggcaatt gcaagctatg caagaacccc      1260
     gatgagtggg acacacaagt taattgtatt gagtgtgaca gatggttaca tctcaaatgt      1320
     ctgaagctag aaggtcccgt taaaaaatat gtgtgtccaa aatgctacac aatagctgag      1380
     gaacgcaagg gaaataggga ggccttaatg caaacagaga ggctactaaa agaaaaaact      1440
     gaagcggaaa aaagaactag agaagaaaac gaaaggtgtg agaaggaaat cgaaagacta      1500
     gaagacatat taagaaatga agaaatacat aaccaatccg acacaactca cctacaagac      1560
     gacctacaga cacttacaac aaacgtaaat aaaatggcaa acttgggttt tgctccacac      1620
     aagaagacag ttttaaaact tccggatttc tatggcaatt atagaacatg gcctcgtttt      1680
     aaactactgt tcgaagaaac cactcgaaca gaaaaatttt cgaatttgga aaaccttaca      1740
     cggctccaaa ttcaccttaa gggagatgca ttgcgatccg ttagcgggtt gatgttgaac      1800
     ccaagtaacg tggatgcaat cttggaaaga ttggggaggt tatatggcaa cccagttagc      1860
     atttttaacg ccttactaaa agaccttatg gtggttaaac gggcatcttt ggaaaatcca      1920
     tcttcgatta ttgagttctg taacgcactg aataacatgg tggaaaatat gaccatgttg      1980
     aaccaaacgg agtacttgat ggaccaaagg ctccttacag atctggtcgc aaaactctct      2040
     ccggacctta aaaccaggtg gctcagagat tcacttaacg aggaaggtga caaaatcaaa      2100
     accttgaaag atttcagcaa atggttgaaa ccaacagaag acgtggcgat cacacttctt      2160
     gctatggaag gtggtcaaag agacagaccg gcgaggctga atactcacta ttcagccagc      2220
     catcaaattt caaataaagg ctgtctaatt tgcagccgtc ctcatgaaac catatcttgt      2280
     tacaagctaa agaatgcctc agtaaacgaa agatggaaaa tgctgaagga gaaaaacgtt      2340
     tgcactaact gctgcaaatt ctctaaccat gcggccatta actgtcgctc aaggccgcag      2400
     tgtacagtgg atggttgtgg acgacgacac aacaccatat tgcatgaaga aaaattyaac      2460
     tcaatgggcg cggcgtcaaa agcacattta aattttcatc aaaactcgga acaataccta      2520
     tttcaagttc tgccaataac tgtctataac gaaaacaact ccatcgaaac atttgcattg      2580
     atagacccag gatcctcaac gagcctcatg acagaaagcc taagacagaa actaaatctg      2640
     catggcccaa ggaagccgtt aacactctcg tggacaaatg gatgcaacca ggtagaggat      2700
     acaagcacgt cggtatctct gaaactcaga ggtccaaacg gcaggctgct ttatgtcaag      2760
     gacattagga cagtaaaaga actggaccta cccactcaaa gcatcaatgc aaacgtgttg      2820
     aagagaaaat tttcccactt aaagacggta aatatttcaa gctacaaaaa tgctaaaccc      2880
     accattctgt taggacttcc acatgcttat tacacgcaag ctgtggagtc caaatcagga      2940
     gcgcccaatg aaccagtggc acacaaaaca cgcattggtt gggtcgtatt tggaaagtgc      3000
     agagatggtg atgcaaaaga aaatcaacat cttttcacaa tacaggataa gaaagaggag      3060
     gaagaaaagt caatgaggga cctgatgaaa aggttttttt caacagaaga atttggcgta      3120
     agggaaacca aattcacccc aaaatcaaag gaccatgaaa gagccctaag tgtaatgaat      3180
     gacacactga aatatacaaa taatcagtat gagattggcc tactttggaa agatcccaat      3240
     gtatccttac caagcagcta cgcacaggcg ctaagaaggc tcgaaagtca agaacggaaa      3300
     atgaaaggta atgacgagat gaaaacctgg tataaaaatc aaattactga ttatgttcag      3360
     aaaggttacg ctcgtaaact aacaccattt gaattgctga atagagatcc aaagatcaat      3420
     tacattcccc attttatggt catcaatcca aataagccaa ctccaaaacc aagactggtt      3480
     ttcgatgcag ctgcaaagaa cgaagggatt tcacttaact ctactctctt gtccggacca      3540
     gacgccacta cgtcaatttt tggagtatta atccgctttc gcgaataccc tatcgcctgt      3600
     tcaggggaca tcaaggagat gttccatcag atacggatcc gcaaagaaga tcaagtggct      3660
     caacgatttt tattcaggga taatccacgc aacgaacccc aagtatacgt tatgaacgtc      3720
     atgaccttcg gtgccacatg ctctcctgct tgtgcccagt tcgttaaaaa tgaaaacgcc      3780
     ttaaaatata aagacaaata ccccactgca gtggaagcaa tagtaaaaaa ccactatgtt      3840
     gatgattatc ttgatagttt tcggactatc aatgatgcaa tcaagactat taacgaggtt      3900
     tgcctcatac atgatagagc gcatttcttt atgagaaatt tcgtttctaa ctgtcaggag      3960
     gtaataagaa gcatcccaga tgatagatcc tcacaacaag agctgctgca catctctaat      4020
     aaagatatga attttgagaa aattttgggg caatactggg acaaaacaaa cgatgtgtta      4080
     aggtataagc ttaagcatac cccgtgttcc ataatttcaa aaagagaaat gctagcctac      4140
     ttgatgaaaa tatatgatcc attggggcta gcggcaaact atactacgca agcgaaggtc      4200
     atcatccaag aaatttggaa aacagaactg gattgggata gcccagtacc agaacgcata      4260
     atggaacaat ggcaaagatg gaaggaaaga ataaaggaac tagaacacat acaaatacct      4320
     agatgctact cggtggctag caatatcgaa gtaactgagt tacacacttt cgttgacgct      4380
     tcggagaaag cgttcgcagc agtagtgtac ttaagaacat taacagaaaa ggggattgac      4440
     gtaaacatag tggcggcaaa aacgagagtg gcaccaataa aaccactctc aattcctaag      4500
     ctggaacttc aagcagcagt actcggagtc agactcgccg agactgttaa agaggaatta      4560
     agaattacca ctgataggga ctattattgg tcagattcca aaaccgtcct aggatggatc      4620
     aatgccgatc cacaaaagta caaacaattt gtggcggtaa gaattggaga gattttagat      4680
     actaccaatg ctagtcaatg gaagtgggtc tcctccgaaa gtaatcctgc agacgaagca      4740
     accaaggtag ttacaagaaa atctatatgg ctgaatggcc cagtatttct taaacaaagg      4800
     gaaattgaat atagggaccc caagctaatc attactcatg aagaaatccg tccaaatctt      4860
     atgattaaaa ccatagagaa gagaacattc aactttataa aaaccgaatg gtgttcaaat      4920
     tggctaagac tgaagagatc actggcaatc aatttaaaat atatagaatt tttgaaaagc      4980
     aaggtcaagc gattagcatt ttccccgata gtagaaaagg aaaacctgga taaagcagaa      5040
     aaactcctat tgcaaaaggc acaatgggag atatacgaag atgatttagt tcagctttca      5100
     ctcaatggac aagtctctaa aaacagcaca ataaagaatc tcaatccaca agtaatagaa      5160
     ggactactac gagcaagggg acgattagca aatatatgct acctctccga tgacgtgaaa      5220
     caacccataa tattacctaa gaggcatcac gtgacagaat tgatcataca gcattatcat      5280
     gaacgctata tgcataaaaa aatggaagca gttattgcgg caatccggca aaggttttgg      5340
     gtaatcgacc ttagggccgt ggtaagaagc gtgatcagca aatgccagcg ttgcaaaaat      5400
     gaacgcgcac gtcccattgc cccgatgatg gccccccttc cagaaagccg agccgctgtg      5460
     ttcaaaaaac ccttcaccca tacaggtgta gattactttg gacccatgac agtgtcaatc      5520
     ggaagaaggg tagaaaaaag atggggagcg atattcacgt gtatgacaac gcgcgctata      5580
     catttagaaa tcgctaaaga cttaagtaca aattccttca taatgtgcct aaaaaatgtg      5640
     cagcataggc gtggaaagat ttgtcacata tacagtgaca atggtacaaa cttcgttggg      5700
     gcaaacaggc aaataacgga actcgtcgaa agatgtgcaa ccaacggtat caaatggcac      5760
     ttcaatcccc cggccgcgcc tcactttgga ggtgtatggg agagaatggt ccgagaggtc      5820
     aagagcttgc tgccaaataa tgataatatg ccagaagaag tattaagatc ggcctttatc      5880
     gagatcgaat ttattctcaa taatagacct cttactcaca tccccctcga aactgaagac      5940
     gacgaacctc tcacaccgtt tcacttcttg atagggtgtt ccggagaggc cgaacctacg      6000
     ccagccggga tttcagcagc tgaagctagc agaaacaact ggaagaaggc acaagttatc      6060
     acccaaaact attgggaacg ttggttgaag gagtacctcc caacattagc caaacgagaa      6120
     aagtggatag aacgctcaga cccaatacaa cctgatgaca tagtcgtctt cccagacgaa      6180
     caacgcgtgg gtaggtggtt aaagggccgg gtagtagaag tttatcccgc taaagacggg      6240
     caagttagat ccgcaaagat taaagttgaa aacggcgaat acaaacgccc tgttatcaac      6300
     ttatcagtac tagaagtaaa gggcaagaaa attgcagacg taccttcgtg gggagttaaa      6360
     agaccggtca acatcgccta cgtcaagaaa ttagctgaac aattaaaaac tcctcctgca      6420
     aaaaggagga agcatctcgt aaaaccttat aatggcccgg tatctatgca ttataagcct      6480
     gttagccgca tggaaactaa cagacaatct ttcagttaaa ccagttgaag aagctggtat      6540
     attcttcgac cacgaaggaa cgcttctctt gaaaaggggt gtgtgggaaa caaccttcca      6600
     cacgaaaata caccccgaaa atgacacaga gactttactg acaatggaga aagaggtgac      6660
     cacagtattc aaggcactga gtgacatgga cactaatctt ctaaatttga aattgacatt      6720
     acaacaaaac attcgacacg cacttcaact ctcacagact gcagtaaaaa gacgaaccaa      6780
     acgatctagc ggcatatttg gatttttgaa aggtattcta tttggagaag acgatattga      6840
     tgaacagtta gccctcttta gagcttctga agaccagaaa ttgaaacata tatcggaaga      6900
     catgactcat aaaatcaagc agggtgacag acttagaaac aaactaaata tgaaaataga      6960
     ccacatgaac gaaggtatta agagtcttaa taaaagcttc aatgaaaaca aaaaaaacgt      7020
     acttataaag catgtcacag aaacaatcat gctagctgaa gacatagtac aatacattac      7080
     gacaaggtat ctagagttag aaatccagcc ccttagcata ttcgactcga cgaaaatttc      7140
     cgagaagata caatcaaggt tacccgatgg gtatacaatt ctagaccacc cccgaatttc      7200
     tagcaaagag ttatttaggg gagaaataat agtacatatt gaaaacgtca tcgtttcgca      7260
     agagagattc gaaatattcc atatcactgt aataccaaac ctaaaaaact ttacaactct      7320
     ggacttagat gaaaatgtaa tagctataaa cgatatacac tatatatacc ctacagatat      7380
     tacgcgatac aatagcactc atcacgtgtc ctccgatgta gccgttagaa gagatttgga      7440
     ttgtatatcc tcatctttca gacatataaa aacagaatgc ttgtgtggta taaaaccaat      7500
     taaaaactca ataaccaaat ttgtaaagct ctcccagccg aacaaaatcc tatactactc      7560
     ttctcatcct aacgaaatat acctcaaatg taacaaaaca ctgacacatc ccgcgtatca      7620
     agctggggta ataacactta gccaagactg taaaatacag accaagaaca tagaaatcca      7680
     gccaaccatg aaaattgaag ctgtagaaac aaaaatgtat ttcaagccgc tggccaaaat      7740
     actgaattta agcgcagagc aaaaagaaga aacaaatatg gatcagctct acctcataat      7800
     aattacaagt acaatagcct gcgtcgccac tttaatatta ggaataacca tagcatttat      7860
     tatcaaacaa gtacgagcta aaatgtacac tttacgcccc ccgccgttta aaccgtcacc      7920
     aaatagtaac ccctctacga ggaattacgg gggtcagga                             7959
//
ID   GYPSY2-LTR_AG repbase; DNA   ; ANG   ; 368 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY2-LTR_AG is an LTR of the GYPSY2_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; 4-bp TSD;
KW   GYPSY2-I_AG; GYPSY2-LTR_AG; GYPSY2_AG; Gypsy clade.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-368
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "GYPSY2_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 76-76 (2003).
XX
CC   [1] (Consensus)
XX
CC   GYPSY2-LTR is a long terminal repeat of GYPSY2_AG (it internal
CC   portion is deposited as GYPSY2-I_AG).
XX
SQ   Sequence 368 BP; 97 A; 115 C; 81 G; 75 T; 0 other;
     tgtagcgacc agaccgccat ctggcgtgag aatcgtgagc gatcgtgaca tccagggaca        60
     aagacacgga tctccgtgga gcgcactcac caggcacacg aatgtgtcaa agtgacgtgc       120
     gccgcgtgtc cagcgctaca cttcctgctg tcagcgagca cattctctct cttgcgaccc       180
     aacctcgaaa gcgaacagac ctcttccttc gctccgcgct cgaaacttcc tcaacgtgaa       240
     accctctcgc acgaacgtgc gcaaccgttc ataatatagt gtaaaataaa gttccgtatt       300
     acctactcac gaaacccaac gcgttcgcga cataaaaaat tagggaccac ttttgtggcg       360
     cccctaaa                                                                368
//
ID   GYPSY59-I_AG repbase; DNA   ; ANG   ; 4552 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY59-I_AG is an internal portion of retrotransposon GYPSY59_AG
DE   - a consensus sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; reverse transcriptase;
KW   AP protease; Gypsy clade; RNase-H; 5-bp TSD gag; GYPSY59-I_AG;
KW   GYPSY59-LTR_AG; integrase GYPSY59_AG; mag lineage.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4552
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY59_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 157-157 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY59_AG is a family of gypsy-like LTR retrotransposons that,
CC   according to the aminoacid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY59-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1482-aa
CC   GYPSY59_AGP gag-pol like poliprotein (pos. 93-4538). The
CC   sequence of the LTRs flanking GYPSY59-I is deposited as
CC   GYPSY59-LTR_AG.
CC   GYPSY59_AGP:
CC   MEQADANQMDIFADVDPRRLSQNRASVPGVSMPNFAHREGASVVPPMIIQPPSQPTSTPSQSTS
CC   TPSLNNASPAIISSADSATMLQMMNLLQQQMTQQQQLLKDFLHARMPSQCAPPTTLQPEQIIDT
CC   LSHHISEFQYNKETGITFKSWFSRYLDLFQKDAARIDDAAKVRLLLRKLGPSEHDRYLSFIMPS
CC   RPPDFSLEQTVEKLTCLFDTQESLLSKRFKCLQIMKTRTEDHLSYACRINKACVEFELKKLNEE
CC   EFKCLLYVCGLKDEIDADIRTRLLARIEDKACVTLQQLSSECHRLINLKKDSAMIEAPVPERVL
CC   AVNTKMHRAPRQFQPKRDNPTTPCWSCGGLHWSRDCPYKQHRCTTCSRTGHKEGYCNTIRSRKP
CC   GKRPWKQRKTQLRMVTVNVQSVQQRRRFVSLTMNGTPVRMQLDTASDITVIDHTTWKLIGSPQL
CC   AAPSVIARTASGANLSLEGEFPCTVEVNGQAKQTVIRVSKSRLLLLGADVIDAFALWSVPMDSF
CC   CCHVTGTSTTPKQWQERFPTVFQGIGLCKKAGVTLTLKDNCRPVFRPKRPVAYAMQEPVNLELD
CC   RLEKLGIITPVKFSEWAAPVVVVKKANGKIRLCGDYSTGLNEALRPHDYPLPLPEDIFSRLSNC
CC   TMFSKIDLTDAFLQVEIDPQYRPLLTINTHRGLYHYNRLPPGIKVAPAAFQQLMDTMLAGLKGV
CC   SGYLDDIIVGGSSEHEHDTNLAEVLHRLQEYGFTIRADKCAFKQQKITYLGHVIDSHGLRPDPS
CC   KIELIKKLPEPKDISGVRSFLGAINYYGKFIPNMRKLRYPLDNLLKANNSFCWTPECKKSFATF
CC   KSLLSSDLLLTHYDPRQKIIVSADASSIGLGATISHVYPGGAMRVIQHASRALSEAERHYSQID
CC   REGLAIIFAVKKFHKMIFGRRFVLQTDHRPLLHIFGSKKGIPTVTANRLQRFALTLLAYDFSIE
CC   YVRTDDFGNADLLSRLINTQAKPEEDTVIACIETDIKAMVVSALHNTPLHFADLIRETRKDPLL
CC   QKLVHYIREGWPSNATYTGELSRFFARKDALSTVDGCILFGERVVIPRVLQQQCLQQIHHGHPG
CC   IQRMKALARSYLYWPSLDADITEWVKTCNACQAVARSPPHSSPVPWPKAAGPWQRIHVDYAGPL
CC   DGDFYLIVVDSFTKWPEVFRTSSTTSAATIGILRGIFARFGVPTTLVSDNGTQFTSEDFKFFCF
CC   QNGIEHITTAPYHPQSNGQAERFVDTFKRTVKKISADGRTMQEALDAFLLSYRSTPSSVLEGLK
CC   SPAEIMFGRPMRTTLDLLRPPLAGGLTDSPVAAKRREFRPSDLVYVKCYSRNGWSWTAGTIVSR
CC   IGNVMYTVRTVDRKTIRSHVNQLRERRERHHHRHRESSESDGLPLDILLDSYHLTPQPTTSTAE
CC   PSSASLQHTTSTHTSVSSASHPQTSAVIDPRTASNAEPLHPTNSPIPVQAPTREPRRFSRHRRP
CC   PSRFDPYRRF.
XX
SQ   Sequence 4552 BP; 1264 A; 1186 C; 1071 G; 1031 T; 0 other;
     gtggcgacga ggacaattta ctttaacgtg tgttcagttt aacgtgtgca agtgtatcaa        60
     acataggacc accgtgtcgc aagcgtcgta agatggagca agccgacgca aaccagatgg       120
     atatttttgc ggacgttgac ccacgccgat tatcccaaaa tcgtgccagc gtaccaggcg       180
     tgtctatgcc aaatttcgcg catcgagaag gagcatcagt agtaccgccg atgataatcc       240
     agccgccatc gcagcctacg tcgacgccat cgcagtctac gtcgacgcca tcgctaaaca       300
     atgcgtcacc agccatcatt agcagcgcgg atagtgcaac gatgctgcaa atgatgaatt       360
     tgcttcaaca gcaaatgaca cagcagcagc agctgcttaa agattttctt cacgcgcgca       420
     tgccgagcca atgcgcccca cccaccacct tgcagcctga acaaataatt gatactctgt       480
     ctcaccacat ttcagagttt caatacaaca aggagactgg tataaccttc aaaagctggt       540
     tttcacgcta tctcgacctg ttccagaagg acgcggcaag gatcgacgac gcagccaaag       600
     tgcgattgtt gctgcgcaaa ctgggaccat ccgagcacga tcgctactta agcttcatca       660
     tgccgagccg cccgccggat ttttcactcg agcagactgt ggaaaaactt acatgcctgt       720
     tcgacaccca agaatcgctg ctgagcaagc ggttcaaatg cttgcagatc atgaagacgc       780
     ggaccgagga tcatctcagc tatgcgtgtc gaattaacaa ggcgtgtgtc gagttcgagc       840
     tgaagaagtt gaacgaggaa gagttcaagt gtttgctgta cgtgtgcggg ttgaaagacg       900
     agatcgacgc agacatcagg acgcgactgc tagcccgcat tgaggataag gcctgcgtga       960
     ccttgcaaca gctttcttca gagtgccatc ggttaatcaa cctgaaaaag gatagcgcaa      1020
     tgatcgaggc accggtacca gagcgtgttc tagcagtaaa cacaaaaatg catcgcgcac      1080
     cacgtcagtt ccaacccaag cgcgacaatc ctactacccc gtgttggtcg tgcggaggac      1140
     tgcattggag ccgcgattgc ccgtacaagc aacaccgatg cacaacttgt tcccggacgg      1200
     gccacaaaga aggctattgc aacaccataa gatcccgtaa gcccggcaaa cgcccctgga      1260
     agcagcgtaa aacacaatta aggatggtga cagtgaacgt ccagagtgta cagcaacggc      1320
     gcagattcgt gtcacttacg atgaatggta caccggttcg tatgcagttg gacacggctt      1380
     ccgacattac tgtgatagat cacacaacgt ggaagctcat tggcagtccc cagttagcag      1440
     caccatccgt aatcgctaga accgcctcag gtgctaacct atccctggaa ggagagttcc      1500
     cgtgcactgt cgaagtgaat ggacaggcaa agcaaaccgt gattcgcgtc tctaaatcgc      1560
     gtttgttact tttaggtgct gatgttatcg acgcgtttgc tctatggtcg gttccgatgg      1620
     acagtttttg ctgccacgtt acaggtacgt ctaccacgcc gaagcaatgg caagaacggt      1680
     tcccaacagt ctttcaagga ataggcctat gtaaaaaggc aggggttacc ttgacgctga      1740
     aagacaactg ccgtccagtc tttcgtccaa aaagacccgt tgcatacgct atgcaagagc      1800
     ctgtaaatct agagcttgat aggctagaaa agttgggtat aataacacct gtaaagtttt      1860
     ctgaatgggc agcaccggta gtagtggtta agaaggcaaa cgggaaaatt cggctatgtg      1920
     gcgattattc cactgggttg aacgaagcgc taagaccaca tgattacccg ttaccacttc      1980
     cagaggacat attttcaagg ctgtccaact gcaccatgtt cagcaaaatc gacttaacgg      2040
     acgcctttct ccaagtcgaa atcgatcctc aatacagacc gctacttacc ataaatacgc      2100
     atagaggctt gtaccactac aaccgcctac cgcccggcat caaagttgct cctgctgcct      2160
     tccagcaact tatggataca atgctcgcag ggcttaaggg cgtatcagga tatcttgacg      2220
     atatcatcgt aggaggaagt agcgaacatg agcatgacac aaatttggca gaagtattac      2280
     acaggcttca agaatatgga tttacgatac gagccgataa atgtgctttt aaacagcaga      2340
     aaatcacgta ccttggacac gtgatcgata gccacgggtt acgaccagat ccgtcaaaaa      2400
     tcgagcttat aaagaagctc cctgaaccga aagacatatc cggtgtgaga tcatttctgg      2460
     gagcaattaa ctattacggg aagttcatcc cgaatatgag gaagctgcga tatccgttag      2520
     acaatttgct taaggcaaat aattcattct gctggacgcc agaatgcaaa aagtcgttcg      2580
     caacgttcaa gtctctccta tcgtccgacc tacttctaac gcactatgat ccacggcaga      2640
     agataatcgt ttctgcagat gcttcgtcca tcggccttgg cgcaacgatt agccacgtgt      2700
     atcctggagg tgcaatgcgc gtaattcaac atgcttcccg cgccctcagt gaagcagagc      2760
     gtcattacag ccaaatcgat cgcgaaggct tggctatcat cttcgctgta aaaaagtttc      2820
     ataaaatgat cttcggcagg cgttttgttc ttcaaacgga ccatcgacct cttcttcata      2880
     ttttcggctc gaagaagggt atcccgaccg tcaccgcaaa ccgtttgcag cgtttcgcac      2940
     tcactcttct agcgtatgat ttcagcatag agtatgtacg caccgatgac ttcggaaacg      3000
     ctgacttgct ttcgcgcctg atcaacacac aagccaaacc tgaagaagac accgtgatcg      3060
     catgcataga aacagacatc aaagcaatgg tggtaagtgc gcttcataac actccacttc      3120
     attttgcaga ccttatcaga gaaacacgga aagaccccct actgcaaaag ctcgtgcatt      3180
     acatacgtga aggatggccc agtaatgcaa cctacacagg ggaattgtct cgtttctttg      3240
     cacgtaagga tgctttatca accgttgatg gttgtatttt gttcggggag agggtggtga      3300
     ttcctcgagt tctacaacag caatgtctgc aacaaataca ccacggtcat cctggcatac      3360
     aacggatgaa agcattggcc agaagctacc tttattggcc atccttggac gctgacatca      3420
     cagaatgggt caaaacatgt aacgcgtgcc aagcagttgc acgatcaccc cctcactcaa      3480
     gccccgttcc ttggccaaaa gctgcaggtc catggcagcg cattcatgtg gactatgctg      3540
     gtccactaga tggagatttc tacctcatcg tagtagattc gttcacgaaa tggcctgaag      3600
     tatttcgaac gagcagcact acatccgcag caaccatcgg catcttacgc ggaatattcg      3660
     cccggttcgg tgttccaacc actctagtat ctgataacgg tacgcagttt acgagcgaag      3720
     attttaagtt tttttgcttc cagaacggca tcgagcacat aacgacggca ccctatcatc      3780
     cgcagtctaa cgggcaggct gaaaggttcg ttgatacttt caagcggacc gttaagaaaa      3840
     tatcagccga tgggagaacg atgcaagagg cgctggatgc attcctactg tcctaccgaa      3900
     gtactccgag ctccgtgtta gaagggctaa aatcaccagc ggagataatg tttggcagac      3960
     caatgcgtac aaccttagac ctattacgtc caccactcgc aggagggtta acagacagtc      4020
     cagtagcagc taaacgcagg gaatttcgcc cgtccgacct ggtatatgtt aagtgttact      4080
     ctcgcaacgg ttggagttgg acagctggga ccattgttag ccgcattgga aacgtaatgt      4140
     acaccgtcag gacagtcgat agaaagacca taagaagcca cgtgaaccag ctgcgcgagc      4200
     gccgtgaacg tcatcatcat cgtcatcgtg aatcatcgga gtctgacggt ttaccgctag      4260
     atattctttt ggattcctac caccttactc cgcaaccgac gacatcaaca gccgaaccat      4320
     catcagcatc gctacagcat actacatcta cacacacgag cgtatcgtct gcatcacacc      4380
     cacaaacgtc agcagtcatc gatccgcgta cggcctcaaa cgcggaaccg ctgcatccaa      4440
     cgaattcccc aattccggta caagctccaa cccgagaacc acgtcgcttt tctaggcata      4500
     gaagaccgcc cagtaggttc gacccgtaca ggcgttttta aaagagggga ga              4552
//
ID   BEL15-I_AG  repbase; DNA   ; ANG   ; 5669 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL15-I_AG is an internal portion of the BEL15_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; integrase; 5-bp TSD;
KW   Bel clade; RING Zn-finger; peptidase; BEL15-I_AG; BEL15-LTR_AG;
KW   BEL15_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5669
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL15_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 37-37 (2003).
XX
CC   [1] (Consensus)
XX
CC   BEL15_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL15-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL15-LTR_AG
CC   LTRs. The BEL15-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 6 copies; they are less than ~1% divergent
CC   from
CC   the consensus sequence.
CC   The consensus sequence encodes one 1741-aa BEL15_AGp Bel-like
CC   protein
CC   (pos. 311-5533).
CC   BEL15_AGp is composed of the peptidase A16 (pos. 120-290),
CC   reverse transcriptase (pos. 770-900) and
CC   integrase (pos. 1450-1600) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="BEL15_AGp"
FT                 /translation="MANAVNLLSRRRTLEEKIQRVIAFADNFVPERDEFRL
FT                 GLFISDTERVAAEFDTVQQLIEDGAAPEAREMESHFRATTEDALMAARASL
FT                 QALSRPSHNVIPASSTIATSGVRLPTISLPEFDGNEMQWATFRDTFEALIH
FT                 CNEEVLTIQKFHYLRAALKGEAAKLLESIPLCASNYNIAWKSLVDRYANEY
FT                 LQKKRHLQAMFNIGKVTKESNASLHRLVDDFDRHVKMLHQLGEPTAQWSTV
FT                 LEYVLCTKLPDETLRTWEDYASTLSSPNYSMLIEFLQRKMRTLESISMNHP
FT                 ATREATHPSFVRRAPQHLSSCSTMASSSKGCPHCQHDHALSSCYKFCRLPL
FT                 SERFQIAIEKKVCHNCLRKGHLARNCASSSRCKHCGERHHSLLHRSSAVGT
FT                 EPKLVYAEGQESTGRNDRYQAQSLNVTKHPIRSEEVFLLTVRLSIVDADGK
FT                 EHSVRALLDCASQPNLMTEKLVKLLQLQRCPSNVKISGAGKISRDVRGSVF
FT                 AEIRSKRQPFSCGVQFLVMDKLTSNLPSETVSVGHWCIPKGLELADPEFNT
FT                 SQPVDLVIGVKHYYSFFPSAARVHLGDELPLLIDSVFGWIVAGSATLQCPE
FT                 PQVTSSNAICMMSLEESIERFWKTDSLVMKDGYSPEERRCEQIFRDTTARN
FT                 ETGRYIVRLPRHPDFGIRLGASKVSAVRRYDLLERRFAKNSKLKEEYHAFM
FT                 KEYLELGHMSLVRDGDAVPAESYYLPHHPVFKESSTTTKIRVVFDGSSKTT
FT                 SGYSLNDALCVGPVVQDDLLDQLLRFRTYKVALVGDIAKMYRQILLHPDDR
FT                 PLVRILFRFEPQQPVQTYQLNTVTYGLAPSSFLATRALIQLADDEGNAYPR
FT                 AGPALRKNFYVDDFIGGAQSVEEATCLRTELAELLQKGGFELRKWTSNCVD
FT                 VLHGLDEAQVGTTTKMSFDSHEAVKTLGISWVPQGDWLVFEGVCQPDDDVI
FT                 TKRSVLSAIAKMYDPLGMIAPIIIRAKMIMQEIWVSSRDWDESLPEDIVCK
FT                 WKQFQKEIRSLSQYRMDRFILLPEARNIELHTFADASSAAYGACTYVRCED
FT                 AGRVRVMLLASKSKVAPLKNLTIARLELCACVLAAHLHHRIKGAIDVAVNA
FT                 SYFWTDSAICMHWIKAPPSTWKTFVANRVAEIQHFTSGAKWRHVAGVENPA
FT                 DLVSRGMEVSEFNNSRAWRHGPAWLEHSQDAWPMPNPQSIPEVAEQERKEL
FT                 ISAVTVCHNELFLYWSSYTRLVNVVSYCMRFIAMLPHLRQLRGRRVLRSSE
FT                 GNAQLKDVSSRKVLSARERAAAVNALTRLAQRESFAEELRDLQGGKRVKKQ
FT                 SELKRLTPFVDEKGIIRVGGRLNLSQLPYQSKHPALLPKGHPLARLIAEHD
FT                 HKMLLHGGGRLLLSVIREKFWPLNGRMLVKSVVRSCIKCIRYQPTLAEQHT
FT                 GQLPAARIIPSRPFAVTGVDYAGPLYLKPAHRRAASLKAYLCVFVCFATKA
FT                 VHLELVGDLSTDGFLAALRRFTARRGVPDHLHSDNGKNFEGARNELRELFA
FT                 TLTSEAAQSTIASSCADQGISWHMIPPRAPHFGGLWEAAVKTAKRHLFRHL
FT                 GSTRLSFEGYYTVLHQIEAAMNSRPLLPLTDDPNDLAALTPSHFLIGSSLT
FT                 ALPDPDMTMAHTNAHEHLAKLQLLVQKFWKHWQKEYLQELQKDPRVARQAD
FT                 QIQPGRMVILMDELLPSTRWPLARVIEVHPGPDGLVRVVTLRTIKGLIKRP
FT                 IAKICPLPVEERGNNTLPAAT"
XX
SQ   Sequence 5669 BP; 1408 A; 1286 C; 1506 G; 1469 T; 0 other;
     tttggtgccg tgaccaggat tggtgtattg tgaagtgaaa ttgttgctcg ttttttgtga        60
     ttttgctgcg tgtaaaaatc tgttgacttt acgttttttc gtcaccgacc atagacaacg       120
     aacagtttct ttcgaaattc gttgtccagt gcttgttgcg tgttgtgact tgattgttga       180
     acattgtgta attgtttgat tggtgtgata attgatcata cgcacggaca gaacatttgt       240
     gaatttgtgt ttcgtgttca gtgtcctgtg tttttagcgc catcgttcca tctgccatta       300
     cgagactgat atggctaacg ctgtaaattt gctgtccaga cggcgaaccc tggaagaaaa       360
     aattcagcga gttatagcat ttgctgataa ttttgtgcct gagcgggatg aatttaggct       420
     tggcttgttc atctccgaca ccgaacgtgt tgcagcagag ttcgatacag tgcagcagtt       480
     gatcgaggat ggagcagcac ccgaagcgcg cgaaatggag agccattttc gcgctacgac       540
     tgaggacgcc ttaatggccg cgagggccag cctacaagcg ttgtcgcggc catcgcataa       600
     tgttattccc gcctcatcga ccattgctac atctggagtg aggctgccaa ccatttctct       660
     tccagaattt gacggcaatg agatgcaatg ggcgacattt cgggacactt ttgaagcact       720
     aatccactgc aacgaagagg tgctaactat ccaaaagttc cattatcttc gagctgcgct       780
     caaaggtgaa gctgcaaagt tgctggaatc gattccgttg tgtgcatcta actacaacat       840
     tgcctggaaa tcgttggtgg acagatacgc caacgagtat ctacaaaaga agcgtcatct       900
     acaggcaatg ttcaacatcg gcaaggtgac caaggaatcg aacgcatcgt tgcacaggct       960
     ggttgacgat tttgatcgtc acgttaagat gctgcatcag cttggcgaac caacagcgca      1020
     atggagcacc gtgctagaat atgtgttgtg caccaagctt cccgatgaga cgctacggac      1080
     gtgggaagat tatgcttcca ccctcagcag cccgaactac agcatgctaa ttgagttcct      1140
     gcaaagaaaa atgagaacat tagaatcgat ttctatgaac catccggcaa cgagagaagc      1200
     tactcatcct agttttgtac ggcgagcccc acagcacctt tcttcctgct caaccatggc      1260
     gagcagttca aaagggtgcc cgcattgcca gcatgatcat gccttaagca gttgctataa      1320
     gttttgccgt cttcctctgt ctgagcgttt tcagatagct attgagaaga aagtttgcca      1380
     taattgctta agaaaaggtc atttggcaag gaactgcgct tcatcgtccc ggtgcaaaca      1440
     ctgtggtgag agacatcact ctcttttgca tcgttcgtct gcagtcggta cggaaccgaa      1500
     actcgtgtat gcggaaggac aagaatctac aggaaggaat gatcgttacc aagcacagtc      1560
     gctcaacgtt actaagcatc ctattcgatc ggaggaagtg tttttgctca ctgttcgttt      1620
     gagcatagtt gatgctgatg gtaaagagca ttcggtacgc gctttgctag actgtgcttc      1680
     tcaacccaac ctcatgacag agaaacttgt caaattgctg cagctacaac ggtgtccttc      1740
     taacgttaaa atatcgggag ctggaaagat atctcgtgac gttcggggat cagtgtttgc      1800
     tgagatacgc tccaagaggc aaccattcag ctgtggtgtt cagttcctgg taatggacaa      1860
     gctgacatcc aatttgcctt ctgagactgt aagtgtcggt cactggtgta tcccaaaagg      1920
     cctcgagcta gctgatcccg aattcaacac atcgcagccg gttgatttgg tgataggtgt      1980
     caagcactac tattcattct tccccagtgc agccagagtt catttgggtg atgagttgcc      2040
     gctattgatt gatagtgtgt ttggttggat tgttgctggt tcggctacgt tacaatgccc      2100
     ggaaccacag gtaacaagtt caaacgctat ctgtatgatg tcgctggaag agagcatcga      2160
     acgattctgg aagacagatt cattagtgat gaaggatggc tactcgcctg aggaacgaag      2220
     atgcgagcag atattccgtg atacaacggc gagaaatgag actgggcgtt atatcgtacg      2280
     cttaccccgt catcccgatt tcggcatcag actgggtgct tccaaggtaa gcgcagtacg      2340
     aagatatgat ctgttggaga ggaggttcgc taaaaattcc aagttgaagg aagagtacca      2400
     tgcgtttatg aaggagtatc ttgagctcgg gcacatgagt ttagttcggg atggagatgc      2460
     agtacctgct gagtcgtatt atttgccaca tcatcctgtg ttcaaggagt ctagcaccac      2520
     aacgaaaatc agggtcgtgt tcgacggttc ttctaaaacc accagcgggt actcgttgaa      2580
     tgatgctttg tgcgtgggac cagtggtgca ggacgacttg ctagatcagc ttttgcggtt      2640
     ccgcacgtat aaggtggcat tagttggcga tatagcaaaa atgtaccgcc aaatacttct      2700
     tcatcctgac gatcgaccgt tggtgcgaat cttgtttcgc ttcgagccgc agcagccggt      2760
     gcagacctac cagctgaata ctgtaacgta tggtctcgca ccttcctcct ttctcgctac      2820
     gcgcgctctt attcagctgg ctgatgatga gggtaatgca tacccacgag cgggccccgc      2880
     tctacgaaag aatttttacg tcgacgactt catcggtgga gcccaatcag ttgaggaagc      2940
     cacctgccta cgaactgaat tggctgagct actacaaaag ggcggatttg agctgcggaa      3000
     atggacgtcg aactgtgttg atgtgctgca tgggctggat gaggcacagg ttggaaccac      3060
     aaccaaaatg agcttcgatt ctcacgaagc cgtgaagaca cttggcatca gttgggttcc      3120
     acaaggtgat tggctggtgt ttgaaggtgt gtgccagcca gacgacgatg tgatcaccaa      3180
     gcgatctgtg ttatctgcca tcgcaaaaat gtacgatcct ttggggatga tagcgccgat      3240
     aatcatccgt gctaagatga ttatgcagga gatatgggtg tcgtcacgtg attgggatga      3300
     atcgttgcca gaagacatcg tatgcaagtg gaagcaattt cagaaggaga tacgatctct      3360
     atcacaatat cgaatggaca gattcatact gcttcctgag gcgcgaaaca tcgagctgca      3420
     cacttttgct gatgcatctt ctgcagccta tggtgcttgc acatatgtgc ggtgtgaaga      3480
     cgctgggcga gttcgagtca tgcttttagc gtcgaagagt aaagttgctc cgttgaaaaa      3540
     tctgactatt gctcggttgg agctgtgcgc ctgcgttcta gccgcgcact tgcatcaccg      3600
     cataaaaggt gccattgatg tggccgtaaa tgcatcatat ttttggaccg actcagctat      3660
     ctgcatgcat tggatcaagg cgccaccgag cacatggaaa acgtttgtgg caaaccgtgt      3720
     agcggaaatc cagcatttca ctagtggtgc caagtggagg cacgtagctg gagttgaaaa      3780
     ccctgctgat ttggtatcgc gtgggatgga ggtgtccgag ttcaacaaca gtcgagcgtg      3840
     gaggcatgga ccagcttggc ttgagcattc gcaggatgct tggcccatgc ccaatccaca      3900
     aagcattcct gaagtggcag agcaagagag gaaggagtta atttcggcag ttaccgtatg      3960
     ccacaacgaa ttgtttctgt attggtcatc ttatactcgc ctggtgaacg ttgtcagcta      4020
     ttgcatgcga ttcattgcca tgctccctca tctaaggcaa ttaagaggaa gaagagtttt      4080
     acgatcctcc gaggggaatg cgcaactgaa ggacgtttca tctcgtaaag ttctcagcgc      4140
     tcgggagcga gcagcagcag ttaatgcctt aacacgcctt gcccaacgtg agtcttttgc      4200
     tgaggagcta cgcgatctgc aaggaggaaa gagggtcaaa aaacaatcag agctgaaaag      4260
     actcaccccg tttgtggacg aaaagggtat catccgggtt ggtggacgac tgaatttgtc      4320
     acagctgccg tatcagtcga aacatcccgc actgctgccg aagggtcatc cattggctcg      4380
     attgattgct gagcatgatc acaagatgct tcttcatgga ggaggacggt tgctgctgtc      4440
     agtcatacga gagaagtttt ggcctttgaa cggaagaatg ttggtcaaaa gcgtagttcg      4500
     gagctgcata aaatgtattc ggtaccagcc tactcttgca gagcagcata ctggccagct      4560
     gcccgctgcc cgaattatac caagccggcc ctttgctgtt accggggtcg attatgcagg      4620
     tcccctgtac ctaaaacctg cgcataggcg cgcagcatcg ttgaaagcgt acctgtgtgt      4680
     cttcgtgtgc tttgcaacaa aggcggtgca tttggagcta gtgggagacc tgtcaactga      4740
     cggttttctc gcggctctac ggaggtttac ggcgaggaga ggtgttccgg atcatctcca      4800
     ttcggacaat gggaaaaact tcgagggagc gaggaatgag ctacgagagc tttttgcgac      4860
     tttgacgagt gaagctgcgc agagtaccat cgcttcatcg tgcgcggacc agggaatctc      4920
     ttggcacatg attccaccga gagctcctca ctttggcggc ctttgggaag ccgcggtgaa      4980
     aacggccaaa cgtcatctgt tccgtcacct cggaagtact cggctctcct tcgagggtta      5040
     ctacaccgta ctgcaccaga tcgaggcagc tatgaactct cgtcctctct taccgcttac      5100
     ggatgatccc aatgatttag ccgcactaac accttctcat tttttgatag gctcctcatt      5160
     aacggcactt ccggaccctg atatgacgat ggcacacact aatgcacatg agcacttggc      5220
     gaagctgcag ctattggtgc agaagttttg gaaacactgg caaaaggagt acttgcagga      5280
     gttgcaaaag gacccgcgcg ttgccaggca ggcagatcaa atccaacccg gtcgaatggt      5340
     tatcctgatg gacgagttgc tgcctagtac ccgttggccg ttagcgcgtg tgatagaggt      5400
     gcaccccggt ccggacgggc tggtgcgagt agttaccttg cgtacgataa aaggtttaat      5460
     taagcgtccg atagccaaaa tatgtccttt gccagtagaa gagagaggaa ataacacttt      5520
     gccagcagct acgtaaccga aatgtccgta tttgtcgatt taatgtttgt gcaccgcgct      5580
     tcgtcgttgt ataaagaaaa ccacgcggtt tatgtcaggt ctgagttagt gttagtgtta      5640
     gtgttgatgg tacatcaagg cgaggagta                                        5669
//
ID   GYPSY11-I_AG repbase; DNA   ; ANG   ; 5781 BP.
XX
AC   .
XX
DT   03-OCT-2003 (Rel. 8.09, Created)
DT   03-OCT-2003 (Rel. 8.09, Last updated, Version 1)
XX
DE   GYPSY11-I_AG is an internal portion of retrotransposon GYPSY11_AG
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; AP protease;
KW   Gypsy clade; 4-bp TSD gag; GYPSY11-I_AG; GYPSY11-LTR_AG; RNase-H;
KW   integrase GYPSY11_AG; mdg1 lineage.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5781
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY11_AG, a member of the mdg1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons.";
RL   Repbase Reports 3(9), 164-164 (2003).
XX
CC   [1] (Consensus)
XX
CC   GYPSY11_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives
CC   of the mdg1 lineage.
CC   GYPSY9_AG, GYPSY10_AG, GYPSY12_AG, GYPSY13_AG, GYPSY14_AG,
CC   GYPSY15_AG, GYPSY16_AG, GYPSY17_AG, and GYPSY8_AG are other
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY11-I_AG consensus was reconstructed after multiple
CC   alignment of 7 copies.
CC   The consensus encodes the 445-aa GYPSY11_AG1p gag-like protein
CC   (pos. 772-2106) and the 2122-aa GYPSY11_AG2p (pos. 2067-5732).
CC   The sequence of the LTRs flanking GYPSY11-I_AG is deposited as
CC   GYPSY11-LTR_AG.
XX
FH   Key           Location/Qualifiers
FT   CDS           772..2106
FT                 /product="GYPSY11_AG1p"
FT                 /translation="AATTTNVFKKVPYTCNFYGRSCINMQKLLEKIEILDR
FT                 TYDQVRQLNKCYRLCALTTLRNNTKELYDEIQELLRKHESSIKDEILTTLV
FT                 KKSRHLYYEINKCIKIHFERHPDSLNTTLSENQFDITIETKSDKMADIIEL
FT                 IKITTSLISKYDGNEKDLKGVVSNLNVLKKIVKPENRETIIELVLGRLTGK
FT                 ARIVVGEAPKSIEDIVNKLQDRCSIKVTPEIVVSKMDNTKQTGTIEDFGSI
FT                 IEKLTQQLEEAYIAEEITPEVARKKATKSGISALSYGLKDGETKIIMRSSK
FT                 FETLHEAIEQAVKLELEDRTKKGKNEQTKILYSNATRNNRGYGNNYQGRNN
FT                 YNRFTNNNNNRYQTQNPPRFPPARYGHNNNRNNNNYRNNNFNNTRNQHANR
FT                 QNNSNRNQYVQSNQRNNSNLQNNRAPIHNTVTAEEQNNFLGQPQASENTQY
FT                 "
FT   CDS           0..0
FT                 /product="GYPSY11_AG2p"
FT                 /translation="FFRATSSIGKYPILTINPDADNFVKVKIEITKEIYST
FT                 LIIDTGATVSVLKASKLKPGCKINTSKKLTLISSSDHESETLGTAMTTIHF
FT                 GDYSIMHEFHIIEDVESIFSDGLLGKDFIKHRCIVDYVNWMIYFSSDNGLI
FT                 SHPIEDNVNGNYILPKRSEVVRKISIPNLTEDSIILSQEIQPGVFCGNTIV
FT                 SKRNQYIKFINTTDKDVSFNIKSYTPEVEPLREYEQLQKKLDTSKERIQKI
FT                 HNKIHIENIPQIAREELENLITKFSDIFCLEDEPVSTNNFYTQEISLKDNI
FT                 PSYIPNYKQIHSQTEEMQSQVEKMLKNNIIEHSVSSYNSPILLVPKKSGEG
FT                 KKKWRLVVDFRQLNKKILPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQ
FT                 IKLDKNSRKYTAFSTPTGHYQFTRMPFGLNISPNSFQRMMAIAMAGLTPEL
FT                 AFVYIDDIIVTGCSARHHISNLGKVFDRLRKYNLKLNAEKCCFFKTEVTYL
FT                 GHKITDKGIYXDDAKFDTIKNFPIPTNADEARRFVAFCNYXRKFVQNFAKI
FT                 AKXINNLIKKDVKFAWTSECQAAFDTLKQSLLSPTILQYPDFKKQFIITTD
FT                 ASDMACGAVLSQITDGNDLPVAFASKSFTPGEKNKPIIEKELTAIHWAINY
FT                 FKPYVYGQKFIVRTDHRPLAYLFGMKNPTSKLTRMRLDLEEFDFEIEYLAG
FT                 KANVAADALSRIILNSDDLKASIPKSKTILMVNTRAMVKKNNEKTDINKDE
FT                 PIATTGTDHPAMWKTDRPLEVRKVLKIGTQRIKNNVEFIIYNHSYSKALGK
FT                 FLLRNDVNGSQALEFALLEMCKIAKQYGRNKLAWSEEDHLFEEYSQQTIKE
FT                 IANRAITKFEIILFTPTRWITTEKDRLRIISDYHMTPSGGHIGQYRLYQKI
FT                 REKYKWKNMKDDIKKYVRNCKACIVNKTTRHTKEKTVVTTTPTKPFNIISI
FT                 DTVGPLTKTNKNNRYAITIQCDLTKYIVVIPIHNKEANTIAKALVENFILT
FT                 FGTFIELKSDQGLEYNNEILHKISEILKIKQTFSTAYHPQTIGSLERNHRC
FT                 LNEYLRSYTNEHHDDWDDWTKFYEFVYNTTEHSDTNYTPYELVFGRKANLP
FT                 QDIFKTKIEPVYNIDQYYFEMKYKLQKSNEIARENLIKAKIKRQQTLNKDT
FT                 VPLIINLGDQVYLENENRKKLDPVYIGPFTVVSDQGPNCVIQNNTTKKIST
FT                 VHKNRLIKYTGE"
XX
SQ   Sequence 5781 BP; 2420 A; 980 C; 980 G; 1401 T; 0 other;
     tggcgaccgt gacttttaaa ctgtaatctt cggatgtgca aaaaaaaagt gacgaatgaa        60
     acctcaaaca cggacaaaaa gtgcaaagtg gaaacgtttt ataaaaatcg caagtgcttc       120
     tgaaatgact tggaaagtga ttaattacca acaatagtga actacgagtg aaaaccaatc       180
     attttcaaaa tgggaggcaa ggctgcaaaa cctgaaacaa atataaaagg agaccatgat       240
     ctcacaatag ttcaaactca gaatattcat acagaatatc atctgactca ggatttaaaa       300
     ctaaacatta ttttagggct gctaatcacc ctgtgcattg ttaaaatagc gaaaacttgt       360
     tacaaacacc ttcgtaacca agcgcaaaaa cacgctttaa aagtgcttac gctaccaaag       420
     tagcaacgta aacattgaat cgagaacagt gaatgaatga tatacgaaaa aggtgatatg       480
     ctatttgacc cacaaaaata ggtaaaggct gtgggaaagt accgtaagtt caccaatgca       540
     gctatggacc gcgattatga aaaacaatta tgcgcgtatg agaacctacc tcaacgtgta       600
     aaaacactgt gaccagcggt atggtttgga acagccgttc ccaacgcgga agacgagaag       660
     aataaggcaa gaatggacgg ttgctcactg tcggacagac aggtgaaaga agagatccct       720
     gggccaaggg acagcagttc accgagcacc gggaacaacg tagcaccgtg agcagcaaca       780
     acaacaaatg tatttaaaaa ggtaccgtac acatgcaatt tttacggacg aagctgcata       840
     aatatgcaaa agctgttaga aaaaatagaa atactagata gaacgtatga tcaggttaga       900
     cagctaaaca aatgctatag gctctgcgcg ttaaccacac taagaaataa cactaaggaa       960
     ttatatgacg aaatacaaga gcttctacga aagcacgaat catccattaa agacgaaata      1020
     ttaacaacct tagttaaaaa aagtagacac ctatattacg aaataaataa gtgcattaaa      1080
     atacatttcg aaagacatcc agattcgtta aatacaacat tatcagaaaa ccagttcgac      1140
     ataacgatag aaactaaatc tgacaaaatg gctgacatta tagaactaat taaaatcacc      1200
     acttctctca tatcaaagta tgatggtaat gagaaagatt taaaaggtgt ggtgtcaaat      1260
     ttaaatgtat taaagaaaat agtgaagccg gagaataggg aaacaataat agagctagta      1320
     ttaggacgtc tgacaggtaa agcgcgaatt gttgtaggag aagccccaaa atcaatagaa      1380
     gatatagtta acaaactaca agacagatgc agcataaagg taacaccaga aatagtagta      1440
     tccaaaatgg ataatacgaa acagacagga acaatagaag atttcggaag cattatagaa      1500
     aaactaacgc agcaacttga agaagcatac atagcggaag aaataacacc agaagtagcc      1560
     aggaaaaaag caactaagtc tggaattagc gcattgagtt atggacttaa ggatggcgaa      1620
     accaaaataa taatgagatc aagcaaattt gaaaccctgc atgaagcaat agaacaagca      1680
     gtaaaattgg aactagaaga cagaacgaaa aagggaaaga atgaacagac aaaaatttta      1740
     tattcaaacg ctactaggaa caatagaggg tatggtaaca actaccaggg aaggaacaat      1800
     tacaatagat tcacaaataa taataataat aggtatcaga cacaaaaccc acccaggttc      1860
     ccacccgcaa gatatggaca taacaataac cgaaacaata ataactacag aaataacaac      1920
     tttaacaaca ctagaaatca gcacgcaaat cgacaaaata attccaacag aaatcagtac      1980
     gtacaatcca atcagagaaa taatagcaat ttgcaaaata atcgagcgcc tattcataac      2040
     acagtaacag ccgaagaaca gaataatttt ttagggcaac ctcaagcatc ggaaaatacc      2100
     caatactaac cataaatcct gatgcagata attttgttaa agtaaaaata gaaattacaa      2160
     aggaaatcta tagcacactc atcatagata ccggagcaac cgtatccgta cttaaagcta      2220
     gtaaattaaa accaggttgt aaaatcaata catcaaaaaa attaaccttg ataagctcta      2280
     gtgatcatga atcagagact ttaggaactg ctatgacaac aattcacttt ggcgattatt      2340
     ccattatgca cgaatttcat ataatagaag atgtagaatc cattttttcc gacggactat      2400
     taggaaaaga ctttataaag cacagatgta ttgttgatta tgttaattgg atgatatact      2460
     tctcatctga taacggattg atttcacacc caatagaaga caatgtaaac ggaaattata      2520
     ttttaccaaa acgaagtgaa gtagtacgaa aaataagtat accaaacttg acagaagatt      2580
     caatcatctt atcacaagaa atccaaccag gggtattttg cggaaacaca atagtctcaa      2640
     aacgtaatca gtatatcaaa ttcattaata ccacagataa agatgtttct tttaacataa      2700
     aatcttatac accagaagtt gaaccattaa gagagtatga gcaattacag aagaaacttg      2760
     acacatctaa ggaacgaatt cagaaaattc ataacaaaat ccatatagaa aatattccac      2820
     aaatagcaag agaagagtta gaaaatctta tcacaaaatt ctcggatata ttttgtttag      2880
     aagatgaacc ggtctctact aacaattttt atacccagga aatttcatta aaagataata      2940
     ttccttctta tataccaaat tataaacaaa tacattcaca aacagaggaa atgcaatcac      3000
     aggtagaaaa gatgttgaaa aataacatta tagaacattc tgtttcatca tataattcac      3060
     cgatactatt agtaccgaag aagtcaggtg aaggaaaaaa gaaatggcgt ttagtagtgg      3120
     attttcggca attgaacaag aaaattttac cagacaaatt ccctttacct cgcatagaca      3180
     cgatactaga tcagctagga agagccaaat atttcagcac attggatttg atgtcagggt      3240
     ttcatcaaat caaacttgat aaaaattcga gaaaatacac agctttttcg acacctacag      3300
     gccactatca gtttacaaga atgccatttg gactcaacat tagcccaaac agctttcaaa      3360
     gaatgatggc tatcgctatg gctggtttaa caccagagct agcatttgta tatatagatg      3420
     atattatagt tactggatgc agtgcacggc atcatatcag taatttaggt aaagtttttg      3480
     ataggctaag aaaatataac cttaaactaa atgcagaaaa atgttgtttc ttcaaaacag      3540
     aagtaacgta cttaggtcat aaaataacag ataaaggaat ttatccggac gacgcgaagt      3600
     ttgacacaat taaaaacttc ccgattccta ctaatgctga tgaagcaaga cgttttgtcg      3660
     cattttgtaa ttattaccgt aaatttgtac agaattttgc taagatagct aaacctatta      3720
     ataatttgat taagaaagac gttaagtttg catggacttc agaatgtcaa gcagcttttg      3780
     atacattgaa acaaagctta ctctcaccca caattttaca atatccagat tttaaaaaac      3840
     aattcattat tacgacagat gcatcggata tggcatgtgg tgcagtgtta tcacaaataa      3900
     cagatggaaa cgatttgcca gtcgcatttg cgagtaaaag ttttacacca ggggaaaaga      3960
     ataagccaat tatcgagaaa gagcttacag ctatacattg ggcaattaat tattttaaac      4020
     cttatgtata tggacaaaaa tttatagtta gaacagatca tagaccatta gcatacttat      4080
     ttggtatgaa aaatcctact tctaagctta ctagaatgag actagattta gaagaatttg      4140
     actttgaaat agaatattta gcaggtaaag ctaatgttgc ggcagacgca ctatcaagaa      4200
     taatccttaa ctcagatgac ctaaaagcat caataccaaa atccaaaacg attttaatgg      4260
     ttaatacaag agccatggtt aagaaaaata acgagaaaac tgatataaac aaagacgaac      4320
     caatcgcaac aacagggact gatcaccccg cgatgtggaa aacagataga cctttagaag      4380
     tgagaaaggt actaaaaata ggtacgcaga gaattaagaa caacgttgaa ttcataatat      4440
     acaaccattc atacagtaaa gcactaggaa aatttctttt gagaaatgat gtaaatggaa      4500
     gtcaagcatt agagtttgct cttctagaaa tgtgcaaaat cgcgaaacaa tatggaagaa      4560
     ataagctagc atggtcagaa gaagatcatt tattcgaaga atattcccaa caaactatta      4620
     aggaaatagc caacagagcc attaccaagt ttgaaataat cctgtttact ccaactagat      4680
     ggataacaac agaaaaagat aggctgagaa taatttcaga ttatcatatg accccttcgg      4740
     gaggacatat aggccagtac agactgtacc agaaaataag ggaaaaatat aaatggaaaa      4800
     atatgaaaga tgatatcaag aaatacgtac gaaattgtaa agcatgcata gttaataaga      4860
     cgactagaca tactaaagaa aaaacagttg taactacaac accgacaaaa ccatttaaca      4920
     taatttcaat cgacacagta ggacctctaa caaaaactaa caaaaacaac aggtatgcaa      4980
     taaccataca atgtgactta acgaaatata tcgtagtaat acctatccat aacaaagaag      5040
     caaacactat agccaaggca ttggtagaaa acttcatcct tacattcgga acatttatag      5100
     aattaaaatc agatcaagga ctagaatata acaatgaaat attacacaaa atctcagaaa      5160
     ttttaaaaat caaacaaact tttagcacag cttaccaccc acagacaata ggatcattag      5220
     agagaaatca tagatgtcta aacgaatacc taagaagcta tacaaacgaa catcatgatg      5280
     actgggacga ttggacaaaa ttttacgaat ttgtttacaa tacaacagaa cactcagaca      5340
     caaactacac accatacgaa ctagtatttg gtagaaaagc gaatttacca caagatatat      5400
     ttaaaacaaa aattgaacca gtttataata ttgaccaata ttatttcgaa atgaaatata      5460
     aactccaaaa atcaaacgaa attgccagag aaaatttgat aaaagcaaaa attaaaagac      5520
     agcaaacctt aaataaagat acagtaccac ttattataaa cttaggagat caggtatatt      5580
     tggaaaatga aaataggaaa aaattagatc cagtctacat tggacctttc acagtagtaa      5640
     gtgaccaagg gcctaattgc gtaatacaaa ataatacaac aaagaaaatc tctacagtac      5700
     acaaaaatag attaattaag tacacaggag aataacttca atcattgtaa ttcattacgt      5760
     tattctatta aaggggggag g                                                5781
//
ID   GYPSY55-I_AG repbase; DNA   ; ANG   ; 4545 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY55-I_AG is an internal portion of retrotransposon GYPSY55_AG
DE   - a consensus sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; reverse transcriptase;
KW   AP protease; Gypsy clade; RNase-H; 5-bp TSD gag; mag lineage;
KW   GYPSY55-I_AG; GYPSY55-LTR_AG; integrase GYPSY55_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4545
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY55_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 149-149 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY55_AG is a family of gypsy-like LTR retrotransposons that,
CC   according to the aminoacid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG,
CC   GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG, and GYPSY69_AG
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY55-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1478-aa
CC   GYPSY55_AGP gag-pol like poliprotein (pos. 98-4531). The
CC   sequence of the LTRs flanking GYPSY55-I is deposited as
CC   GYPSY55-LTR_AG.
CC   GYPSY55_AGP:
CC   MSQEEDERRSSQGWQNVMAPVTVHAPQDTGQRPQVPLTQFVQQNGSVPPFSASSVQNVPESDNS
CC   ATAQILKLMQQQMAQQQQILLQLMQQTKAPIEQTPLEQILDSLCGHIKEFRYDEENGSTFAAWY
CC   TRYEDLFLKDAARLKDEAKVRLLMRKLGTSEHDRYTSYILPKHPRDYSLQETVAKLTSLFGTKE
CC   SLLHRRYKCLKLTKLRTEDFITFACRVNRGIVDFELGRLTEEQLKCLVFVCGMKGEEDIEFRTR
CC   LLHRIEENQDVTLDQLSAECQRMTNLRQDSAMIERDRSEQVFSVQRNANRNQRTNTGPSHYTNE
CC   QRTGKPSRPCWLCGSLHWTRECTYKTHTCTQCGSVGHREGFCKQQRTKKQPHRKKTFRKRANMQ
CC   SVTVNVNSLHHRRKFLSCSVNGSQIRLQLDTASDITVISRRLWKRIGSPQLFPSSVIAKSASGD
CC   KLEMDGEFRATVGINGQEKQAVIFVAKGELALLGIDLAEAFSLWSVPIDQLCNNVTSTATTPEG
CC   IVRKFPGLFKSTMGFCAKAEVTLHLKPNCSPVFCAKRPVAYAMRDAVDAELDRLERLNIITPVQ
CC   HSEWAAPIVVVRKSNGQLRICGDYSTGLNASLHPHDYPLPLPQDIYTKLGNSTIFSQIDLSDAF
CC   LQVPIAEQSRRLLTINTHKGLYLYNRLPPGIKVAPGAFQQLMDQMLAGMERVASYMDDVIVGGR
CC   TQREHDDVLNETLRRIQEYGFTIRPEKCSFNKRQVRYLGHILDNHGIRPDPAKIAAIKDLSAPT
CC   DVSGVRSFLGAVNYYGRFIPNMRKLRYPLDNLLKEGSSFKWSPECQKAFEQFKSILSSELLLTH
CC   YDPRREIVVSADASSVGLGATIGHKFPDGTFKVVQHASRALTKAEKNYSQIDREGLAIIFAVTK
CC   FHNFIFGRHFTLQTDHKPLLRIFGSKKGIPVYTANRLQRFALTLQLYDFDINYVSTDNFGNADI
CC   LSRLIRNHEKLEEDYVIASIGLEEDIRSVVVNSLSSVALNATDVATATKSDPIMSKVIQFVRQD
CC   WPRNSTFSGELACFYARKEALSEMGGCLLFGERVIIPKALRQRCLRQLHHGHPGVQRMKSIARS
CC   YVYWPKIDTDIAELVASCNACASAAKSPPHASPVSWPEITAPWQRIHIDYAGPIDGFSYLIVVD
CC   AFSKWPEVIRTASTTSKATIRILNTMFARYGMPVTLVSDNGRQFISSEFEDFCICNGIEHLTSA
CC   PFHPQSNGQAERFVDTFKRAITKITSDGTAIEDALDTFLQTYRATPNPQVPNNEAPATVMFGRQ
CC   IRTCLELIRPVPKPQETNNDEQRRNFVPNDLVFAKIYSQNGWKWKPGRILRKCGNVMYRVMTED
CC   HKIIRSHINQLRRRVPSNQQSSKRDQHLLPLHILLDEWNLTPPSSSPDSSSSSSSSSPSSSSLS
CC   PPSDSAPCNLSPSSAESSSYRTVSQSSASPPPERDCIPEESHRGAQPVPPPRRSFRDRKAPRWF
CC   DPYLLY.
XX
SQ   Sequence 4545 BP; 1272 A; 1154 C; 1051 G; 1068 T; 0 other;
     gttggcgacg aggattttta aagtttgtga cgaattttta tcggaagtga atttcgcgta        60
     gtgcaaagct attccaccga caaggaaacg ccgcaggatg agccaagaag aagatgaacg       120
     tcgatcatcg caaggttggc aaaacgtgat ggccccggtt acagtgcacg caccgcaaga       180
     tacaggtcaa cgtccccaag tgccactgac ccagttcgta cagcaaaatg gttcggtccc       240
     accattttct gcatcgtcag tacagaatgt tccggaaagt gataattctg caacggcaca       300
     aattttgaaa ctaatgcaac agcagatggc gcaacagcag caaattttgt tgcaattaat       360
     gcagcaaacg aaagcgccta tcgaacaaac gccccttgag caaatactcg attccttatg       420
     cggtcacatt aaggaattca ggtatgacga agaaaacggt tcaactttcg ctgcatggta       480
     cacgagatac gaggatcttt tccttaaaga cgctgcacgc ttgaaagacg aggcaaaagt       540
     gcgtttattg atgagaaagt tgggaacctc tgaacacgac cgttacacca gctacatact       600
     gccaaagcat ccgcgtgatt acagtttgca ggaaacagtt gctaaattga ccagcttatt       660
     tggcacgaaa gaatccttgc ttcatcgacg atacaagtgt ttgaagctaa ccaaacttcg       720
     caccgaggat tttatcactt tcgcgtgccg ggtcaatcgt ggcatcgtcg attttgagct       780
     gggaaggcta acggaagagc agttaaagtg tttagtgttc gtttgcggta tgaagggcga       840
     agaagacatc gagtttcgta cacgtctttt acatcgcatc gaggagaacc aggatgtaac       900
     ccttgaccaa ctttctgcag agtgtcagcg tatgacgaat ttgcgtcagg atagtgcgat       960
     gattgaacgt gaccgcagtg aacaagtatt ttccgttcaa cgtaacgcaa atcggaatca      1020
     gcgcaccaac acaggcccgt ctcattacac caacgaacag cgtacaggta aacctagtcg      1080
     accatgctgg ttatgtggat ccctgcattg gactcgcgag tgcacttaca agacgcacac      1140
     atgcacacaa tgcggatcgg tcggccatcg cgaaggtttc tgtaagcagc aacgtaccaa      1200
     gaagcagccc catcgaaaga agacttttcg taaacgagcc aatatgcaaa gtgtcaccgt      1260
     gaatgtgaac agcctacatc atcggaggaa atttttatcg tgttcggtca acggttcaca      1320
     aattcggctc caactggata cagcatcgga catcaccgtg attagtcgtc ggctttggaa      1380
     acgcatcggt agcccgcaat tattcccatc atctgtaatc gcgaaatcgg catctggtga      1440
     caaactcgaa atggatggcg aatttcgagc aacggttgga atcaacgggc aggagaagca      1500
     agctgtaatt ttcgtggcaa aaggagaatt ggccttgctg ggaatcgacc ttgctgaagc      1560
     tttctcctta tggtctgtgc ctatagacca gctgtgtaac aatgttacca gcacagctac      1620
     tactccggag ggaatcgttc gaaaatttcc cggcctgttt aaatcaacga tgggtttttg      1680
     tgcgaaagct gaggttacac tacacctgaa gccgaattgc agtccagttt tctgcgcaaa      1740
     acgtcccgta gcttatgcca tgcgcgatgc agtggacgcc gaacttgata gactggagcg      1800
     gctcaatatc atcacaccag tccagcactc cgagtgggca gcaccgattg tagtggtacg      1860
     caagtcgaat ggacaactga gaatatgcgg agactattcg acgggactca acgcatcact      1920
     ccacccccat gactatccgc tgccactgcc acaggacatc tacaccaaac tgggtaactc      1980
     gacaattttt agccaaattg acttatctga tgctttctta caggtcccca ttgccgagca      2040
     aagtcgccgc ttgctcacca taaacacgca taaagggttg tacctgtata atcgcctgcc      2100
     accagggatt aaagtagcac caggcgcatt tcagcagctt atggaccaaa tgcttgctgg      2160
     aatggaacgt gtcgcgagtt acatggacga cgttatcgtt ggtggacgaa cacaacggga      2220
     acacgacgac gtactaaacg aaaccctgag acgcattcag gagtatggtt tcaccatccg      2280
     cccggagaaa tgttcgttca acaaacgcca agttcgctac cttggtcaca tcctcgataa      2340
     ccacggcatt cgtccagacc cagccaaaat agctgcgata aaggatcttt cagcgccaac      2400
     cgacgttagt ggtgtacgtt cctttcttgg cgccgttaac tattatggaa gattcatccc      2460
     gaacatgcgc aagcttcgat acccgttgga caacctactg aaagaaggca gttcgtttaa      2520
     gtggtcccct gaatgccaaa aagccttcga gcagttcaaa agtatccttt catcggaact      2580
     gctcctgacg cactacgatc caaggcgtga gatcgttgta tccgcggacg cgtcatccgt      2640
     cggattaggc gcaacaatcg gtcacaagtt ccccgatgga acttttaaag ttgtgcagca      2700
     tgcgtcccgt gcacttacaa aggcagagaa aaactacagc cagatagatc gggaaggctt      2760
     ggcaattatc ttcgctgtga cgaaattcca taattttata tttggacggc attttactct      2820
     acaaacagac cacaagccac ttttgagaat tttcggcagc aagaaaggca tccccgttta      2880
     caccgccaat cgcttgcaga gattcgcgct caccttacag ctgtatgatt tcgacatcaa      2940
     ttacgtatcg accgacaatt ttgggaacgc cgacatcctt tcgcgactga ttcgaaatca      3000
     cgaaaagtta gaggaggatt acgtgattgc tagcatcggc ctagaggagg acatacgatc      3060
     agtcgtcgtt aactcattga gttcagttgc attaaatgca acggatgtcg caacggctac      3120
     taaatccgat cccattatga gcaaagtcat acagtttgta cgacaagact ggccacgtaa      3180
     cagtacgttc agcggtgagc tggcatgctt ctacgctagg aaggaagctt tatcagagat      3240
     gggaggctgt ctcttattcg gggagagagt catcatacca aaggctctcc ggcaacgatg      3300
     cctgcgtcaa ctacatcacg gccatccagg tgtacaaagg atgaagtcga tcgcacgaag      3360
     ctacgtctac tggccgaaga tagacactga tatcgctgaa cttgtagcat cttgtaacgc      3420
     ttgtgcatcc gcagcgaaat cacccccaca cgctagcccg gtatcatggc ctgagataac      3480
     tgcaccgtgg caacgtatcc acatcgatta tgctggcccc atcgacggtt tctcctactt      3540
     aatcgtagtc gatgctttct ctaaatggcc agaggtaata aggactgcca gcacaacttc      3600
     caaagcgacc atacgaatcc ttaataccat gtttgcgcga tacggtatgc cagtaaccct      3660
     tgttagcgat aatggtcgcc aattcatcag ttccgaattt gaggattttt gtatttgtaa      3720
     cggcatagag cacctcacat ccgccccgtt ccaccctcag tctaacgggc aagcggaacg      3780
     cttcgtggat acattcaagc gcgccataac caaaatcacg agcgatggaa ctgcaataga      3840
     agatgcactt gacacgtttt tacaaacata tcgcgccacg ccaaatcctc aagtgccaaa      3900
     taacgaagcg ccagcgacag taatgttcgg acgacaaatt cgcacttgtt tagagcttat      3960
     acgccctgtg cctaaaccgc aagaaaccaa taacgatgag caacgacgca atttcgtccc      4020
     aaatgatcta gtcttcgcta agatttactc gcagaacgga tggaaatgga agccaggaag      4080
     aatattgcgg aaatgcggca atgtaatgta ccgtgttatg actgaggacc ataagattat      4140
     acgaagccat atcaaccaac tacgtcgtcg ggtcccttct aaccagcaat ccagtaagcg      4200
     tgatcaacac cttttgccgc tacatattct cttggatgag tggaacctta cgcctccgtc      4260
     gtcgtcacct gattcatcgt catcatcgtc ctcatcgtct ccatcgtcat cgtcgttgtc      4320
     gccaccgtcc gattcagctc cgtgtaatct atcaccgtcg tccgctgaat catcatctta      4380
     caggaccgtg tcccaatcat cagcatcacc acctcctgaa cgtgattgca tccctgaaga      4440
     gtcgcatcga ggagcacagc cggtaccacc accacgccgc tcttttagag atagaaaagc      4500
     accgcgttgg ttcgacccgt acctgctgta ttaaaagaag ggaga                      4545
//
ID   GYPSY63-I_AG repbase; DNA   ; ANG   ; 4342 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY63-I_AG is an internal portion of retrotransposon GYPSY63_AG
DE   - a consensus sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; reverse transcriptase;
KW   AP protease; Gypsy clade; RNase-H; 5-bp TSD gag; mag lineage;
KW   GYPSY63-I_AG; GYPSY63-LTR_AG; integrase GYPSY63_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4342
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY63_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 165-165 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY63_AG is a family of gypsy-like LTR retrotransposons that,
CC   according to the aminoacid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY64_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY63-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1432-aa
CC   GYPSY63_AGP gag-pol like poliprotein (pos. 35-4330). The
CC   sequence of the LTRs flanking GYPSY63-I is deposited as
CC   GYPSY63-LTR_AG.
CC   GYPSY63_AGP:
CC   MSLENQNIQLEILKALQKLSETSTGTNNTERFVAMNMTEFTFDPENGGTFQKWFRRYEDLFESD
CC   AKELEDVAKVRLLLRKLDAQAHNQYTNYILPKLPKELTFKETVQTLSKIFGSQSSLFSRRYRCL
CC   QLVKTEADDIISYAAKVNRACEDSEFHNMKADHFKCLVFICGLKGQTYADIRARLLSRIDAETA
CC   DAPITLQNLVDDFQKLVNLKADTSIVEQQPNSSTTVNALHEKTEHHHHEQYRQRYQESKTSEQP
CC   RRPCWRCGQMHFVRDCQYSTHQCRKCNRVGHKEGYCGCFSKFKPAGEEKTNTKPSTSDQGKLNA
CC   RGVYIVNHITQHSSKRKFVPATINGVTINLQLDTASDITVISQQTWQKLGSPNIQPVTIQAINA
CC   SGKPLHLSGEFQCTININGQTQQGRCFVTTAVNLNLLGIEWIELFELWSIPIDTICNQLTTESI
CC   DQQMREIQAKHADVFKDTLGHCKKTKVKLYLKSNAKPVFCQKRPVPFNTIPLVDAELTRLQNLG
CC   IIETVDFSEWAAPIVAVRKPNGRVRICADYSTGLNAALEANHYPLPTPEEIFSQLNGSTIFSII
CC   DLSDAYLQLEVDDDSKHLLTINTHRGLFRFNRLAPGVKSAPGAFQRLVDGMIADIPGVRSFIDD
CC   VIVFGKDMKSHKDSLNTLFARLKEYGFHVKAEKCHFCKTQLVYLGHVVDKHGIRPDSEKIKTIA
CC   SIPPPSNVSELRSYLGAVNFYGRFVRNLHELRYPMDQLLKKESKWKWTPECQEAFVKFKEALQS
CC   HLLLTHYDPKLPIIVAADASNTGIGAVIFHQFTDGKMKAIQHASRTLTPAEQNYGQPEKEALAL
CC   VYAVCKFHKYLLGRHFTLLTDHKPLLSIFGSKKGIPLHTANRLQRWALTMLNYDFEIQYVSTQD
CC   FGCADLLSRLIDRNKQPEEEYVIATLTLEDDLSSILSDTSQKVPISFQALRKATASSSTLQAVC
CC   KFIREGWPNCSTNLPTAIQPYYARRESLSIVQGCVMFGDRVVVPNIFQKKILQQFHRGHPGIVR
CC   MKSIARSYVYWPGIDKEIEDFVKCCSPCAITAKTPTKTTLEFWPIPSKPWSRVHIDYAGPVDGF
CC   YFLVIVDPHSKWPEVYATRSITARTTIRILKQIFATFGVPEVLVSDNGTQFTSYEFKEFCVSQG
CC   INHLRIAPYHPQSNGLAERFVDTLKRSIQKIRKGGESLEDALTTFLQVYRTTPSGDLDGKAPAD
CC   IMFSRPLRTISSLLKPSEHGNVEPRNRMKEAEFFNKKHGAVKRCYQQGDAVYVKIYRRNSWQWE
CC   AATVIDKIGNVNYNVFLKEKQQLVRSHTNQLKSRLANGQNMAEFSTPLSVLLDDFGLKTPLPSD
CC   QQSTSSQFVSCDEPVTTSSDTELASQTLCSTPDHSELGNISSENDNAEESEGEEPVVQQQEQQS
CC   SILERSRRVIKLPERFKSYWMPNP.
XX
SQ   Sequence 4342 BP; 1395 A; 968 C; 894 G; 1085 T; 0 other;
     attggcgacg aggatagttg aactaaaagc aagaatgtct ctcgaaaatc agaacattca        60
     attagagatt ttgaaggctc tgcagaagct atcagaaaca tcaacgggta caaataatac       120
     ggaacgattc gtggcaatga acatgaccga gtttactttc gatccagaga acggaggaac       180
     ttttcaaaaa tggtttcgac gttatgaaga tttgttcgag tcggatgcca aagaactcga       240
     agatgtcgct aaggtcaggc ttttactgag gaagttggat gcacaagcac acaaccagta       300
     caccaattac atcctcccga aacttccgaa ggagctaact ttcaaggaaa ctgtgcaaac       360
     attatcgaaa attttcgggt cgcagagttc actttttagc agacgttacc gttgtcttca       420
     gctcgtcaaa accgaagcag atgacattat tagttacgcg gcgaaagtga accgggcttg       480
     tgaagattca gaattccaca acatgaaggc tgaccatttc aagtgtttag tatttatttg       540
     tggattgaaa ggtcaaacct acgcagacat acgagccaga ctactctctc gcattgatgc       600
     cgaaactgca gatgcgccca ttacactgca aaatttggtt gacgatttcc aaaaactcgt       660
     caatttgaaa gcagatactt ccatagttga gcaacagcca aactcatcta caacggtaaa       720
     cgctctacat gagaagacag aacatcacca tcacgaacag tatcgacagc ggtatcaaga       780
     atcaaaaaca tcagagcaac ctcgcagacc atgctggcgt tgcggtcaaa tgcactttgt       840
     tcgagattgc caatactcga cacaccagtg tagaaaatgc aatcgtgttg gtcacaaaga       900
     aggctactgt ggatgttttt caaaattcaa acctgccggg gaggagaaga ctaacacgaa       960
     accatcaaca agtgatcaag gaaaactgaa tgccagaggt gtctatattg tcaatcacat      1020
     cactcaacac tccagcaaaa gaaaatttgt tcctgcaacc atcaacggcg ttacaatcaa      1080
     tctgcagctc gacacagcaa gtgatattac ggtgatttca caacaaacat ggcaaaagtt      1140
     gggctcaccg aacatccaac cagtgacgat tcaggccatc aatgcatctg gtaagccact      1200
     ccatttatcg ggcgaattcc agtgcaccat caacatcaac ggccagaccc aacaaggcag      1260
     gtgtttcgtc actacagcag ttaacctaaa cttgctaggg atagaatgga ttgaactatt      1320
     cgagctttgg tccattccaa ttgatacgat ttgtaatcaa ctaacaacag aatcgatcga      1380
     ccagcagatg cgagaaattc aagcgaagca tgcggatgtt tttaaggata cattggggca      1440
     ttgcaagaaa actaaggtta agctttacct caaatcaaac gcaaagcctg ttttctgcca      1500
     aaagcgtcct gtacctttta acacaatacc tttggttgat gccgaactta ctcgattgca      1560
     aaacttgggc ataattgaaa ctgtcgattt ctccgagtgg gcagctccaa ttgtggcggt      1620
     gaggaaaccg aatggacgtg ttcgaatatg tgccgattat tcaacaggat tgaatgctgc      1680
     gttggaggca aaccattatc cattgccaac accagaagaa attttctcgc aacttaacgg      1740
     cagcaccatc tttagcatca tagacctgtc cgatgcctat cttcagctcg aagttgacga      1800
     cgattcaaag catttactaa ccatcaatac acatcgtgga ttattccgat tcaaccgtct      1860
     cgcaccaggg gtaaaatcag caccaggagc attccaacgc ctcgtagatg gaatgatagc      1920
     tgatattcct ggggtgcgat cattcattga tgatgttatt gttttcggca aggatatgaa      1980
     atcacacaag gattcactca acaccttgtt cgcacgtctt aaggagtacg gatttcacgt      2040
     aaaagccgaa aaatgccatt tttgcaagac tcaacttgtg tacttgggac acgttgtaga      2100
     taagcatggt attcgtccag attccgaaaa gatcaagaca attgcttcga ttccaccacc      2160
     aagcaatgtg tccgagctac gatcttatct tggagcagtg aatttttacg gaagattcgt      2220
     tcgtaacctg cacgaattac gttaccctat ggatcagctg cttaagaagg aatcgaaatg      2280
     gaaatggacg ccagagtgtc aggaagcttt cgtcaagttt aaggaagcac ttcagtcaca      2340
     tttgctccta acgcactacg atccaaaact tccgatcatc gttgctgcgg acgcatcaaa      2400
     cacaggaatt ggtgcagtca tttttcatca atttactgat ggaaaaatga aagcaattca      2460
     acacgcgtca cgaacactta cacccgctga acagaactat ggacaaccag aaaaagaagc      2520
     tctcgcatta gtttacgcag tatgcaagtt tcacaaatac ttgcttggac gtcatttcac      2580
     tttgctcacg gatcacaaac cattactttc aatttttggt tcaaaaaaag gtataccact      2640
     tcataccgct aaccgtttgc aaaggtgggc acttaccatg ttgaattacg atttcgaaat      2700
     tcaatacgtg tccacacaag atttcggatg cgcagatctt ttatcacgat tgattgaccg      2760
     aaacaagcag ccggaagaag agtacgtaat tgcaacactg actttagaag atgacctttc      2820
     gagcattctg tccgatacat cacagaaggt tccgatttca tttcaagcac tccgtaaagc      2880
     aaccgcttca agctcaacac tacaagcagt ctgcaaattc attcgtgaag gttggccgaa      2940
     ttgttccact aatcttccaa ctgcaatcca accttactac gcgaggcgcg aatcattatc      3000
     aatagtccaa ggatgcgtta tgtttggtga cagagttgtt gtaccaaata tatttcaaaa      3060
     aaagattcta caacaatttc atcgaggaca cccagggata gttcgaatga agtcaatcgc      3120
     tcgaagctat gtttactggc ctggtattga taaagaaatc gaggattttg ttaaatgttg      3180
     tagtccgtgt gcaattacag cgaaaacacc gacaaagaca actttggaat tttggcccat      3240
     accatcaaaa ccatggtcca gagtacacat tgactatgca ggcccagtag acggattcta      3300
     cttccttgta atcgtggatc cacactcgaa atggccggaa gtttacgcta ccagatcaat      3360
     aactgcgaga acaacaataa gaattttgaa acaaattttc gcaactttcg gagtgccaga      3420
     agttctcgtg tctgataacg gtactcaatt taccagttac gagtttaagg agttttgcgt      3480
     tagtcaaggc atcaaccact tgcgcattgc tccatatcat ccgcaatcca acgggttagc      3540
     tgaacgattt gtggatacac tgaaacgaag tattcaaaaa attcgcaagg gaggggaatc      3600
     tctcgaagat gcactaacca ctttccttca agtatatcga accacaccat ctggagattt      3660
     ggatggaaaa gctcctgctg acattatgtt ctctagacca ttacgaacta tatcgtcgct      3720
     cctcaaacca agcgagcacg gaaatgttga gccgaggaac agaatgaagg aagccgaatt      3780
     tttcaacaaa aagcacgggg cagtgaaacg atgttatcaa cagggcgatg ctgtttatgt      3840
     caagatatat cgtagaaact cctggcagtg ggaagcagca accgtaatcg acaaaatcgg      3900
     caacgttaat tataacgttt tccttaaaga aaaacagcag ttagtacgat cacacaccaa      3960
     ccagctgaaa tctcgattgg caaacgggca aaacatggca gaattttcaa caccactatc      4020
     tgtactgctt gatgattttg gtttgaaaac acctttaccg tcagaccaac aatcaacgtc      4080
     gtcacagttt gtttcctgtg atgaacctgt aacaacatca agcgatactg aactagcatc      4140
     tcagacactc tgttcaactc cagatcattc tgaattgggt aacattagtt ccgaaaatga      4200
     caacgcagaa gaatccgagg gagaagaacc agttgttcaa cagcaagagc agcaatcatc      4260
     aattttggaa agaagtcgaa gagttatcaa attaccagaa cggttcaaat cttactggat      4320
     gccgaatcca taagggggga ga                                               4342
//
ID   GYPSY51-LTR_AG repbase; DNA   ; ANG   ; 368 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY51-LTR_AG is an LTR of retrotransposon GYPSY51_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; Gypsy clade;
KW   CsRn1 lineage; GYPSY51-I_AG; GYPSY51-LTR_AG; 4-bp TSD GYPSY51_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-368
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY51_AG, a member of the CsRn1 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 95-95 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY51-LTR is a long terminal repeat of GYPSY51_AG (its internal
CC   portion is deposited as GYPSY51-I_AG).
XX
SQ   Sequence 368 BP; 97 A; 115 C; 81 G; 75 T; 0 other;
     tgtagcgacc agaccgccat ctggcgtgag aatcgtgagc gatcgtgaca tccagggaca        60
     aggacacgga tctccgtgaa gcgcactcac caggcacacg aatgtgtcaa agtgacgtgc       120
     gccgcgtgtc cagcgctaca cttcctgctg tcagcgagca cattctctct cttgcgaccc       180
     aacctcgaaa gcgaacagac ctcttccttc gctccgcgct cgaaacttcc tcaacgtgaa       240
     accctctcgc acgaacgtgc gcaaccgttc ataatatagt gtaaaataaa gttccgtatt       300
     acctactcac gaaacccaac gcgttcgcga cataaaaaat tagggaccac ttttgtggcg       360
     cccctaaa                                                                368
//
ID   P1_AG       repbase; DNA   ; ANG   ; 4946 BP.
XX
AC   .
XX
DT   13-2002 (Rel. 7.11, Created)
DT   13-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   P1_AG, a P-like DNA transposon - a consensus sequence.
XX
KW   P; DNA transposon; Interspersed Repeat; P superfamily; P1_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4946
RA   Kapitonov V.V., Jurka J.;
RT   "P1_AG: a family of P-like DNA transposons from African malaria
RT   mosquito.";
RL   Repbase Reports 2(11), 21-20 (2002).
XX
CC   [1] (Consensus)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of those families is P1_AG.
CC   P1_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 11bp long.
CC   The P1_AG consensus sequence was reconstructed from
CC   several copies that are only ~1% divergent from each other.
CC   Presumably, P1_AG copies have multiplied in the genome
CC   during last 1 million years.
CC   The P1_AG encodes a 895-aa P-like DNA transposase called P1_AGp.
CC   Putative exon/intron structure (based on FGENESH):
CC   302-563, 624-734, 797-2262, 2433-3281.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="P1_AGp"
FT                 /translation="MSSNYKCCVAFCKNNRYNVKKVGVNVCFHKFPEGKET
FT                 KQKWIAFCQREISWIPSSSNVVCSQHFLPSDYQLSSSHNTKRGANWLNPEA
FT                 VPSILLPQDTGLNLSQFNEHQQNNNNDESSRAELQGATSSHLLPDENDLIL
FT                 IGKENVCKKCKGLQQKIFNLEAKLNELEERNKQLVTINNKLSDTLKEVNEK
FT                 EKEHLKKLEELDKATKKIKEEWPRANFVQNMKDSLKGSLSSNQIDLILGIK
FT                 KTVRWTKEELSLAFTLRYFSQRAYRYIGDDMKIPVPVPRTLQRYSSKIDLK
FT                 QGILEDILKFIGSYSQTLKPMDRECVLSFDEMKVSRVLEYDPSADEIVGPF
FT                 NYLQVVMMRGLFKQWKQPIFIGFDTKMTKDIIIEIISRLSEKDINVVAIIS
FT                 DNCQTNIGCWKELGARDDVEKPYFPHPKTNKNVYVIPDTPHLLKLLRNWLL
FT                 DHGFEYNGQLIETTNLLRMVAKRMESEMTPLFKLTTSHIDMTPQERQNVRR
FT                 AAELLSRTTAVALRTYFPDDDNAKILANFIEKVDVWFSISNSYTPFAKLDF
FT                 KKAYTASDDQVRALTDMYDIISNMTIPGKNGLQIFQRSIMMQIKSLQMVFA
FT                 DMKLKHDAKFICTHKLNQDVLENFFSQLRQIGGVYDHPSPLSCIYRIRLMI
FT                 LGKTPTILHNQTTTVEAANCEQDEFITTTESNVAGARSNDVFISASMFEKA
FT                 EITPELPDVKAMEEANNFVSQDVSSLSSVSDTSIELPHQEADGLSYILGYL
FT                 AKKHHSQFSHLNLGEHTFKTRIDHNYCQPPTFVHHLSCGGLIEPSDEFLNL
FT                 GKKMEKIFLKMNPDGGLLKGERIVDRITNKIKRHLTELPVEIIRSFAKQRV
FT                 IVRMRYLNLKATAEQLNKMKHKKRKFVTENTKAAKKMKKIIN"
XX
SQ   Sequence 4946 BP; 1701 A; 839 C; 944 G; 1462 T; 0 other;
     caaggttatt agactgtata caggttacga caaaaccccg ttttgacaca tcttcaataa        60
     aaaaatgaat taaaattttg acagacaaat tggaaagttt gtttacctac aaattgcaat       120
     ccttccgaac atacagcttt cgcaattgat gagtgcttaa atactaccgt ttttctgcgt       180
     ttcaattttc gtttttgtgc ttttttagtt tacggctagt taagtttatt taaggaatta       240
     ggtttatcta agctaagtaa ttcattaaat agctataaat tacgaaacaa agcagcgaaa       300
     tatgtcgtcc aactacaagt gttgtgtagc attttgtaaa aataatagat ataatgtaaa       360
     gaaagttggt gtcaatgtat gcttccataa attcccagaa gggaaagaaa ccaaacaaaa       420
     atggatagcc ttttgccaaa gggaaatatc gtggatacct tcctcaagta atgtggtgtg       480
     ttcgcaacat ttcttgccat ctgattacca attgagcagc tcgcacaata ccaagcgtgg       540
     ggctaattgg ctaaaccctg aaggtgagac gttatcaaac caaacgatgt tgtttcttta       600
     taccgatata aactctattt tagctgtccc atctatcctg ttaccacaag acactggttt       660
     gaatttgtcg cagtttaatg aacatcagca gaataataac aatgatgaat cttcccgggc       720
     ggaactgcaa ggtggtatgt taatgaattg gcgatgttta tttgatccat tctaaaattt       780
     atgaatatga tttcagccac ttcatctcat ctcttgccgg acgaaaatga tttaatattg       840
     attggaaaag agaacgtttg caagaaatgt aagggattac aacaaaaaat atttaattta       900
     gaagcaaaac ttaatgaatt agaagagcgc aacaagcaac tggtcactat aaataacaaa       960
     ttaagtgata cactgaagga agtaaacgaa aaagaaaagg aacatctgaa aaagctagaa      1020
     gaacttgata aagctacaaa aaaaattaaa gaagaatggc cacgcgctaa ttttgtgcag      1080
     aacatgaaag attcgcttaa gggttcgcta tcatcaaatc aaattgacct tattttagga      1140
     attaagaaga ctgttcgatg gactaaagaa gaactttcct tagcatttac tcttagatat      1200
     tttagtcaaa gggcataccg ttacataggc gatgatatga agataccagt accggtacca      1260
     agaactttac aacgatattc ttccaagatt gatctaaaac aaggcattct ggaagatata      1320
     ttgaaattca ttggatcata ttcacaaaca ttaaagccta tggatcgaga atgtgtttta      1380
     tcgttcgacg agatgaaggt gtctcgagta ttagaatacg atccatcggc agatgaaata      1440
     gtgggcccat ttaattatct gcaagtagtc atgatgcgag gattgtttaa acaatggaaa      1500
     cagccgatat ttatcggctt tgataccaaa atgacaaagg atatcattat cgaaataatt      1560
     tcacgattga gcgaaaaaga tataaatgta gtcgctatca tcagtgataa ttgccaaaca      1620
     aacattggat gctggaagga gctaggcgcg cgggatgacg tagaaaagcc gtattttcca      1680
     catccaaaaa ctaataagaa tgtgtatgtg atccctgata cacctcattt gctgaagttg      1740
     ttaaggaatt ggcttctaga tcatggtttt gagtacaacg gccaacttat cgaaaccacc      1800
     aatctgttgc gtatggtagc caaaagaatg gagtcagaaa tgactccttt atttaaactc      1860
     acaacatccc atatagacat gactccccaa gaacgacaaa atgttcgaag ggcagcagag      1920
     ttattgtctc gtacaaccgc tgtagctctc cgtacatatt ttccggacga tgataatgct      1980
     aaaattttgg ctaattttat agagaaggtg gatgtgtggt ttagcatatc taattcttac      2040
     acacctttcg caaaattgga ttttaaaaaa gcatatactg ctagcgatga ccaagttaga      2100
     gctttaacag atatgtatga cataatatca aacatgacta tcccaggtaa aaatggttta      2160
     caaatttttc aacgttctat aatgatgcag attaagtcac tgcaaatggt gtttgcagat      2220
     atgaagttaa aacacgatgc caaattcatc tgtacccata aggtaagcaa catgataatt      2280
     caattgcaat taattcattg aacattcaat accatatgac tatacaggaa aatctcagct      2340
     agagctggtg aattcattgt tacaaaatta atcattttaa ctaatacatt tattgttgtg      2400
     tttctttttc tttttttttt ttcattttac agttaaacca agacgtatta gagaattttt      2460
     tctctcagct taggcaaatt ggtggtgtat atgaccatcc ctcacctcta agttgcattt      2520
     atcgaattcg tcttatgatt ttggggaaaa caccaaccat tttgcacaat caaacaacta      2580
     ctgttgaggc tgcaaattgt gagcaagatg aattcattac aacaactgag agcaatgttg      2640
     ctggtgctag gagtaatgat gttttcatct cagcttctat gtttgaaaag gccgaaatca      2700
     ctcccgaatt accggatgtc aaggcaatgg aagaagcaaa caatttcgta tcacaagatg      2760
     taagttcact tagttccgtt agtgatacaa gcattgaact acctcaccaa gaagctgatg      2820
     gattgtctta catacttgga tatcttgcaa agaagcatca ctctcagttt tcccatctta      2880
     atctgggaga acacacattt aagactagga ttgaccataa ctattgccaa cctcctacat      2940
     ttgtacacca tttgtcctgt ggtggactga ttgaaccgtc ggatgaattt ttgaatttag      3000
     ggaaaaaaat ggaaaaaata ttcttgaaaa tgaatccaga cggaggatta ttaaaaggag      3060
     aacgaatcgt agatcgaatc acaaacaaga taaagcgaca tctaacagaa cttccggttg      3120
     agataattcg ttcttttgca aaacagcgtg taattgttcg tatgcgctat ttgaacttaa      3180
     aagcaacagc tgagcagcta aacaaaatga aacataagaa aagaaaattc gtgacagaaa      3240
     atacaaaagc tgccaaaaag atgaaaaaaa ttattaatta aagtttatgg taatgtaaga      3300
     ggtagcatat agcactcatt aataacgatt aagcatatat ataatacata ggactttatt      3360
     ataggaataa aaatgacaat gtgataaaaa tttcatactc ctctaaattt aagttttcat      3420
     tgtattgtag tattaagaag agattattaa atggattgtt aaatagaaaa taaaaaagta      3480
     caatttgtgc aaaatataga gtaatttgac agtagagatt cgttgtacaa tgtaatcact      3540
     cggaccacat catttttagt ttttatcttc cgtcaataac accaaccttg atatagaatg      3600
     ttaatacgat gaaccaacaa aaacacccta actagccatt gctgtgtgac agtactttcc      3660
     aaactacagg ccgcatgcag tcccgagtgc ctataatgtg ccccacgatg atttggcaat      3720
     ttttcatcca acagattgat cattgttcat atagcagagc ggcctaccaa acagaaagat      3780
     caaaagaaaa atgttgaaag ttctactaaa tatatgaacg gttaagagcc gcaatctcaa      3840
     aaataaagag ctgcatgcga gccgcacttt gccgttcgct ggtctacaag ttacaaagca      3900
     tttatagtac atcgttgctt tcgaaaacat aatggtgtaa tttatcatta tctgtatcat      3960
     gaaaatagaa tgcaactata atcaaattaa aggaaacgtt attgatgtgt tctattccta      4020
     cacgacacct tttcaacgat agtcgctacc gaaattttgt ataaagcgta accacatgtt      4080
     ttttttatat gaagtttccc tgaagaaacg tcgttcgacc ggtgcatcct agagattaat      4140
     catgggttag gtgttgttga attcaagctt agggtgttga agcaaagaat taatctgtat      4200
     gaaggaaggt gaaggatgta gcttgtggag cagtacggtc aatgggatat tctcgaggtg      4260
     taggcttgca gtataaattg gctggggatt gtttttaaaa agaactgctg tcccaccgag      4320
     caggtgcttg taagatgact ctgatttatc gttgtctggc tgatgtaggt tgtccggcat      4380
     tggtcacata acacagtgag ctcgatggtt catggatcaa ctagtcaatc tgtcggatga      4440
     tggatgcaga cgagaggtag gaggcagtca tgaaccgacg ttaggtgcta atggagcagg      4500
     acgtgctcag cagtgattgg agataaaaca aagagagggt gaaattataa aactttgcca      4560
     cagtatgagt agtattgatg gtttgaaagc aacatacaac ttgcattatg ccttaattct      4620
     cctatacacc tgattgtgct ctgcgatgtt cgatgtcgat ggaccttgca gaataggtca      4680
     acaatttggg gatgtttttc acctggaatc agctcactca ctagaattac ctggagtctt      4740
     tcagctgcag aaaaaaaatc gagaaattta ttatgcttac tacatttgtt tcgtatttta      4800
     aattctaatc ttcgtcattc gtgaacagca taagctgatc aaaacaaagc cggcgtgatt      4860
     tgacagacaa attgtaaaca atataaccaa catggttcca gcaaaaacga agtgtcttaa      4920
     cctcagtaga atatataata accttg                                           4946
//
ID   T1          repbase; DNA   ; ANG   ; 4634 BP.
XX
AC   M93689;
XX
DT   03-2002 (Rel. 7.11, Created)
DT   03-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   T1 is a non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; ORF2; AGT1; T1_AG; ORF1; CR1 clade; T1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4634
RA   Besansky J.N., Bedell A.J., Mukabayire O.;
RT   "Evolution of the T1 retroposon family in the Anopheles gambiae
RT   complex.";
RL   Mol. Biol. Evol 7(3), 229-246 (1990).
XX
RN   [2]
RP   1-4634
RA   Besansky J.N., Bedell A.J., Mukabayire O.;
RT   "A retrotransposable element from the mosquito Anopheles
RT   gambiae.";
RL   Mol. Cell. Biol 10(3), 863-871 (1990).
XX
DR   Genbank; M93689; Positions       1    4634.
XX
CC   T1 is a CR1-like non-LTR retrotransposon. It encodes a
CC   DNA/RNA-binding
CC   protein (T1-ORF1p) and the reverse transcriptase (T2-ORF2p).
CC   T1-ORF1p (positions 169-1497):
CC   ILAPSLLLFRQFCRDIVWLRSCSCHSSVCAVSFVMQCSTCNAPTDSANSVSCAGVCGSKHHTHCTGLSRD
CC   STRELGRNNQLLWLCKNCNEFRNGTNSLLTSEIAALLELVKAEILTTIDSSLSSLRSAIKSDLLAEILAL
CC   ADKLTPVLAKPSVSQPSRTHTSTNASSLNATNTRTTKTASTRRTFTNSMELTADIQQAANDTNTVEASDS
CC   CNHYTHRTKVTSDISAGPCRTNTKSSSDPVLNHDTTNTGIAEKVWLYFTNIKSHVSADDMRVWLKAVLPT
CC   DNIDVYRLTKKGANLDLMSFISFKVSIPKSLKDLALQSTIWPVSLTVREFVDRGLPKQRIHERARFDPSA
CC   LTSHRSSSANCSSAAPKSTAHPDHFLDHRSPSPQRGNQSLSQMTEILEAIQPEFPPTPPQLSPGVGLQSQ
CC   NNLSNTNRSPQISPFAKRIAHN
CC   T2-ORF2p (positions 1487-4414):
CC   LTINRPFVIYYQNVRGLRTKYNELRLSANESGFEMLALTETWLNESIPSNMVLDSDSYNIYRCDRSRLNN
CC   ERSRGGGVLLACSSRYPSVALNMNQPTLEALCIRVSFPKFRLYVGIVYVPPYLSSDRNYFESLSAFIXDA
CC   YMHMKPNDHLILLGDFNQPALGWSPAAAVRSDSSLPMRHYVPHISLNSSSSCFLDVLNLHELYQLNGVHN
CC   HSNHYLDLVLSNSAAAACSSVYPASSLLLPQDAHHPALEIALPSSLFRASRVRNELPSAPNSLSVRYNFR
CC   LTDYRKLNSILSRADWSFFYQCTSVDEAVQSFNALLTSALLSCTPIFRSPPNPPWSNRTLRNLKKDRMKY
CC   LRRYRLNRSAFNFRLFKYAASAHRLYNRARFEAYSSRLQSRFRSDPASFWQFVRIRRGCNTLPNEMVLDS
CC   RTASTPVEICELFSAHFSQMFEPPVSDPNLIEGGLLYTPENLINLSDISVSSETVVQVLFGLKRSFTPGP
CC   DGIPASVLINCKDVLAPHLAKIFNLSLSLGVFPALWKSCWLFPVHKKGCRSIVSNYRGITQTCATAKTFE
CC   LCIFPTILHSCSSAISPKQHGFMPGRSTSTNLMSFVTNIFRSFEAGTQLDAIYTDFHAAFDSLPHSLLLA
CC   KLSKLGFGDGIISWLSSYLSNRSCRVKTGSYLSEEFFCTSGVPQGCVLSPLLFSLFINDVCNVLPPDGHL
CC   LYADDIKIFLPVSSSSDCMSLQHYLNAFVHWCSSNLLRLCPDKCSVISFSHSLSPISFNYTLSNSSLSRV
CC   LSIRDLGIILDSRLNFKLQLDEVLLKANRTLGFILRFTSIFRDQSFLRNLYYALVRPLLEYASIIWNPPT
CC   IDGCSRIESIQRLFTRVAFRRLFGAASLPPYETRLQLFNLHSLSFRRQVSQACFIGGLLLSDTDAPDLLS
CC   SISLYVPSRSLRPRDPLSIETRHTLYTFNDPILSCFRLFNHFYYLFDFDSSLNSFRNRIFSSNSL.
XX
SQ   Sequence 4634 BP; 1059 A; 1101 C; 880 G; 1593 T; 1 other;
     agagagagat cgactgtcaa accgagtggt tgtgccttcc ttgtgctcct gatttttgat        60
     gctgttttgc cgtgttactg cctgattttc aacatttgca acattggtgc tgctgagttg       120
     cttgtactgg ctagtgcgtg ccttcgattg ttatcaagtt gcacttgaat tcttgcacct       180
     agtctcctgt tatttcgtca gttttgccga gatattgttt ggcttcgttc ctgctcctgt       240
     cactcgtcag tttgtgctgt gtcattcgtt atgcagtgct caacctgcaa tgcacccacc       300
     gatagtgcaa attcggtgtc ctgcgccggt gtgtgtggct ccaagcatca tacccattgc       360
     acgggtttgt cccgtgattc tactcgagag cttgggcgga ataatcaatt gttgtggttg       420
     tgcaaaaatt gtaacgagtt tcgcaatggc acaaactcac ttctcacaag tgagatagca       480
     gccctactcg agttggtgaa agcagaaatt ctcaccacga ttgactcatc tctctcttct       540
     cttagatcgg ctatcaagag cgatttgctt gctgagatcc tcgctctcgc tgataagcta       600
     acacccgtat tagctaagcc gtctgtttct cagccatcgc gaacgcacac gtccactaat       660
     gcatcgtcac tcaacgccac taataccaga acgactaaaa cagcatccac tcgccgtaca       720
     tttaccaact caatggagct cactgcagat atccaacaag cagcgaacga taccaacact       780
     gtggaagctt ctgatagctg caaccactac actcatcgta ctaaggtgac tagtgatatt       840
     agtgctgggc catgccgaac aaatacaaaa tcatcttctg atcctgtttt gaaccatgat       900
     accacgaaca ctggcatagc agaaaaagta tggttatact tcacgaacat caaatcgcat       960
     gtctccgctg atgatatgcg tgtgtggctt aaagctgtgc tgccaaccga caacatagat      1020
     gtttaccgtc tcacgaaaaa gggtgcaaac cttgatttga tgtcctttat atcgtttaaa      1080
     gtgagtattc ctaaatcact taaggatctg gcgcttcaat ctactatttg gccagtttca      1140
     cttactgttc gtgagtttgt tgatcgtggc ctaccaaagc aacgtataca tgaaagggcc      1200
     cgatttgacc cttctgcgct tacttcgcat cgttcaagca gtgcaaattg ctcttcagct      1260
     gcgccaaaaa gcaccgctca tccggatcat tttttggatc atcgatcgcc atccccacag      1320
     cgcgggaatc aatcactatc ccagatgacc gagatcctag aggctatcca accggagttt      1380
     cctcccacac cccctcagtt atcaccgggg gtggggcttc aatcacagaa caatctcagc      1440
     aacacgaatc gctcaccaca gatcagcccg tttgccaaac ggatagctca caattaatag      1500
     acccttcgtg atctattacc aaaatgttcg aggccttcgc accaaatata atgaattgcg      1560
     cctttctgcg aatgaatcag ggtttgaaat gcttgccctt actgaaacct ggttaaatga      1620
     atcgattcca tccaatatgg tcctggatag tgattcttac aatatatacc gttgcgatcg      1680
     cagcaggtta aacaatgaac gatcgcgtgg gggtggtgtg ctgcttgcat gttccagtcg      1740
     ttatccgtct gtggcactta acatgaatca acctacgctt gaagctttat gtattcgtgt      1800
     ttcttttcct aagtttcgtc tttatgtggg gattgtttat gtgccaccgt atttgagcag      1860
     cgaccgcaac tatttcgaat ccctttctgc tttcatcagn gatgcataca tgcatatgaa      1920
     accgaatgat catcttatcc ttcttggcga cttcaatcaa ccggcgttag ggtggtcgcc      1980
     tgcagccgca gtaaggtcag attcatcttt acctatgaga cattatgtgc cacatatctc      2040
     tttgaattca tccagttcct gctttttgga tgtgttaaat ttgcatgaac tctatcagct      2100
     gaacggggtg cataaccatt caaatcatta tctggacctg gtgctctcta actctgctgc      2160
     tgctgcttgt tcttctgtgt atcctgcttc gtcactgctc ctgccccagg atgcccatca      2220
     tcctgctctg gaaattgcgt taccgtcttc tttatttagg gctagtaggg ttaggaatga      2280
     attgccttct gctcctaatt cattgagtgt tcgttataat tttcgtctta cagactatcg      2340
     taaacttaat tctattctat ctcgtgccga ctggtctttt ttttatcaat gtacatcggt      2400
     cgacgaggct gtccaatcgt ttaatgcttt gttaacctct gcactccttt catgtacacc      2460
     tatttttcgt tcccctccta atcctccctg gtccaatcgt actcttcgca acctgaaaaa      2520
     ggatagaatg aaatatctta ggaggtatcg tctgaaccga tctgctttca actttcgttt      2580
     atttaagtac gctgcctctg cgcatcgact atacaacagg gctcgttttg aggcctattc      2640
     gagtagactg caatcgcgtt tccgttctga tccagcatcc ttctggcaat ttgttaggat      2700
     tcgaagaggg tgcaatacgt tacctaatga aatggtactt gattctcgaa ctgcctctac      2760
     gcctgttgag atctgtgagc tattctctgc acatttttcc caaatgtttg agccaccggt      2820
     tagtgaccct aaccttattg agggtgggct actctacacg ccagagaact taattaatct      2880
     ctccgatatt tcggttagct ctgaaacagt tgtacaggtg ttatttgggt tgaaacgttc      2940
     ttttactcct ggtccagatg gcattcctgc ctcagtttta ataaactgta aggacgtgct      3000
     tgctccacac cttgctaaaa ttttcaacct ttcactttct ctcggggtct ttcctgctct      3060
     ttggaaatcc tgttggcttt ttccggtaca caaaaaggga tgccgtagca ttgtctctaa      3120
     ttatcgtggg ataactcaaa catgtgccac agccaaaact tttgagctat gtatctttcc      3180
     aaccatactt catagttgta gttccgctat tagccctaaa cagcatgggt ttatgcctgg      3240
     taggtctact tctactaatc tcatgtcttt tgttaccaat attttcagat cttttgaggc      3300
     aggtacccaa cttgatgcaa tatacactga ctttcatgct gcatttgata gtttgcccca      3360
     ctctttacta ttagctaaac tatctaaact tggttttggt gatggcatta ttagctggct      3420
     gtcctcatac ttaagtaatc gatcttgcag ggttaaaacc gggtcgtact tatctgagga      3480
     gtttttttgt acgtcaggtg tccctcaggg ttgtgtgcta agtccacttc tgttttcttt      3540
     gttcatcaat gatgtctgta atgttttacc tcctgatggt catctccttt atgcggatga      3600
     tatcaaaatc tttttacctg tgtcctcttc ttctgattgt atgagtcttc agcattacct      3660
     taatgcattt gttcattggt gttcatccaa cttacttcgc ttgtgccctg ataaatgttc      3720
     tgttatttct ttctctcact ctctttctcc tatttcattt aactatactc tctctaactc      3780
     gtctctctct cgtgttttgt ccatccgtga ccttggtatt atactcgaca gtcgtcttaa      3840
     ctttaaactg cagcttgatg aggttctact aaaagctaat cgaactcttg ggtttatttt      3900
     acgttttacc tctattttta gagatcaaag cttcttaaga aacctttatt atgctctggt      3960
     aaggcctctt cttgaatatg ctagcatcat ctggaatcct cctactattg atggctgttc      4020
     gagaattgaa agcattcagc gcctttttac cagggttgct tttcgtcgtt tgttcggtgc      4080
     tgcctcacta cctccctatg aaacgcgatt gcagttattc aatcttcact ctttaagctt      4140
     ccgccgccaa gtgtctcagg catgttttat tggtggctta ttactttctg atactgatgc      4200
     tcctgattta ctctcgtcca tctcgttgta tgttccctct cgttcccttc gtcctcgtga      4260
     tcctctgtca attgaaacac gtcatactct ttatactttc aatgatccta ttctatcctg      4320
     tttcaggttg tttaaccact tttactatct ctttgatttc gactcctctc tcaactcttt      4380
     ccgtaaccgt attttttctt ctaattctct ttaattattc ttctaagttt cattaagttt      4440
     tgatagtctc tacgctctac ctatgttttt ttttctttaa tttttttgct aggtctagac      4500
     tagtttagtt aggcttagtt tttcatgaat tattttgttt atttgttagg gtttatttag      4560
     ttttaagtct gccttattta gccttgatgg cggatattgt attaataaat gaaatgaaat      4620
     gaaatgaaat gaaa                                                        4634
//
ID   CR1-2_AG    repbase; DNA   ; ANG   ; 4665 BP.
XX
AC   .
XX
DT   13-2002 (Rel. 7.11, Created)
DT   13-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   CR1-2_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   Non-LTR retrotransposon; reverse transcriptase; CR1 clade;
KW   endonuclease; DNA/RNA-binding; PHD finger; CR1-2_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4665
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-2_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2(11), 2-2 (2002).
XX
CC   [1] (Consensus)
XX
CC   CR1-2_AG is a family of CR1-like non-LTR retrotransposons.
CC   The CR1-2_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~100 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-2_AG occurred less than 1 million years ago.
CC   Integrations of CR1-2_AG have not produced target site
CC   duplications.
CC   The consensus sequence encodes two proteins: a 416-aa
CC   CR1-2_AG-ORF1p
CC   (positions 256 1503) and 996-aa CR1-2_AG-ORF2p (positions
CC   1559-4546). CR1-2_AG_ORF1p is a putative DNA/RNA binding protein,
CC   which includes the PDH domain. CR1-2_AG-ORF2p is composed of
CC   the AP endonuclease and reverse transcriptase domains. The 3'
CC   terminus
CC   is composed of the AATA microsatellite.
XX
SQ   Sequence 4665 BP; 1046 A; 1223 C; 888 G; 1508 T; 0 other;
     tgtcacttgt cacttgtcac tcatagcggc tggttgtgct ttctcactct gctatttcca        60
     agttgatttt ttaccgcgat tttcttgttg attaaggctt gaactgtttt agttcggtta       120
     atttgcactc gcgcgttcac gtatcacaaa tttgtgcggc acctgtgaat tgtacggttc       180
     aacatataaa cattgcaatc cgcctgcggt tgttgtgacc actcactgtt cagtcgaact       240
     ttgcgctatt ttgcgatggc gtctgtgatc tgtaagaaat gtgaaggtgc tattagcaac       300
     gatccaattc cgtgcttcgg tctttgtgaa cactattacc acgataagtg cattggactt       360
     tcaaccccgc tcctgcgtga ttttaagaag tcacaaaatt tattctgggc ttgcgcggat       420
     tgtgctcagc gtttgcgggc cgttgacact ttacgcttct cgcacggcct ttctcgtgac       480
     gctgcctacc tgttggaatc gttgcagtcc gatttccgcg atacctcacg ttctgtgcag       540
     gcggcatcag ctggcttgcg acttgaactt tcctcttcac tggattgttt tagaaacgag       600
     atagctttga tgaaacagga atcagcatcg tcaattcgtt ccgtgaaaga tttcatcgac       660
     tcacttactg cttctcactc aatggaacgc aactactcac aggctccact actcacaacg       720
     cttgatgaag ttaagcatgg catcaaggag cttgatctca tgcaccgtga gcttctcact       780
     tccttcaact cactaatgaa caagctcaac tctcatcttg ccacgcatac cactacatcg       840
     agtgctcacc attctgcgat tcctgctacg cactcaacga ccacgattcc agttgcggcc       900
     tctaagctca cccatcaagc tgttggtgag aatccttcta aacgtcgatt gttggatcgc       960
     tctcccgacc catcgcctac caataccgtt acacgcgcta tgctttcatc gggcacaggg      1020
     ttgtcctgca ataatattac gaccgttcct gaacgcccac cccgtacttg ggtctttatc      1080
     tcccgtattg ctcctgatac tccgattgaa gcgatccgcg aaatggcctg ttctaacata      1140
     gggacagacg acatcttggt atacagcctt gtacgacgcg accgggatct ttctacgctc      1200
     tcctacgtat cttttaaaat tggtgtaccg gattcgcacc gggctattgc tttggctgct      1260
     tcaacctggc ctcgcgggat ctcttttaag gagttcatcg accttaatcc ccgctccgtc      1320
     aatgtttggc gacccactac tgcagcatcc catgcacctt ctgcgcctgt tactcgtgaa      1380
     tcggatcatc attcatcgcc accttctatc aaccacacga cacaactgcg aaacgctgat      1440
     ttcactattt cgcccgatca tggtcctatg agcttgcctt atacgcagta ctttcagcaa      1500
     gcgtaaaccg gctgatccgg ctgaagattt tcatgaacta ccgactttac ccgaattgat      1560
     ggaagctaac cctgcatcta atacacacaa tccgtccgac tctcttccgc cgttaataac      1620
     ttgcagcgag agcactcccg gcgcatctcg ctctctcatt ccttcgatcg atcgactaaa      1680
     catctactat caaaacgtaa gaggattgcg cacaaaacta gacgagttac gcctctctct      1740
     atctgagctt gatatggatg tgttggtgtt aactgaaaca tggctcgatg gctcaattcc      1800
     gtcctctctt atctcggagg atgcgtatgt catctatcgc tgcgaccgaa attctctcaa      1860
     cagtaaccgt tgccgtggtg gtggtgtact cattgcctgc tcttccgtgc tgaacacgtc      1920
     aactttatca ctgccgttcg actcgctgga gtctgtttgg acaattgtta agcttcaaaa      1980
     ccttgcaatc tatatcggcg ccgtttacat cccacccgat ttgcgttctt ccgaagtagt      2040
     ccttgacgat ttacatgaga gtgttagttt cgttgctggc aaacttaaac caaatgatct      2100
     tatggtgtta cttggtgatt ttaattcacc atcactctcc tggcaaccgt cggcatcgtg      2160
     cgttaatcag ttcattccta ctggtgtatc tcgtgaaaat gtttctctgc ttgatggaat      2220
     gtcggtaaac ggtttgctgc aattatccgg cataaaaaat atacgcggaa gacaattaga      2280
     tcttctattt gccaatgctg ccttcttgga gtgctgctcc cccgtcatag cttcacctgt      2340
     tccactcgtc gcgctagaca atcatcatcc tgctcttgag acaagcgtgc tccttacgca      2400
     ctctcgccct gcatcctccc aacgaatacc tacggctcgt atgttcaatt ttaggaaatt      2460
     ggactaccaa aagcttcatc gtatattagc cgataccgat tggtccttta ttgatgctga      2520
     ctgtgacata aatcaagctg tagcagcgtt tactaatgta atcacttccg ccttcccttc      2580
     ctgctgtcct ctccttaaac ccgctcctaa tcctaagtgg tcgaacagag ctttacgtct      2640
     attaaaatcg gacaaaaacc gcgctcaacg cgcctaccgt ttaaataata ctttacacaa      2700
     tctttgtgta tataaatatg cggctaaggc ttatcgtctt cttaatcgcc atctgtatcg      2760
     tcgctacgtt cggcgtcttc aaatgcgctt cactattgat cctgggtcat tctttcgttt      2820
     tgcgaactct cggcgaggct ctgctagcct tccatccacc ctgtttcttg atctgtcctc      2880
     tgctacgtcc aatcctgata tatgtaacct gtttgccaaa catttctcta gtgtatttgt      2940
     cgatcctagt acttttaagg ttcctttgga cgtaggcttg tcttacacgc cctctgatgt      3000
     gatatcatgt aattcagtcg ttgtaagtga aagcctagta aaatccgctt tatccaaact      3060
     taaaacttcg ttttcaccag gccccgatgg catccctgcc tgtgttttga aaaaatgtgg      3120
     caataccctc actcctattc tcactcgtct tttttctcgc tcgcttagtg tagggatttt      3180
     tcctagtcaa tggaaactag cttggcttgt tcccatttat aagaaaggtg accgcacact      3240
     agcatcaaac tacagaggca tttctattat ttgtgcgtgt tctaaaatcc tcgagtcaat      3300
     tgtccattta tctgtaatgc cttgtgtaaa aaattatatt tctacggaac aacacggctt      3360
     tatgcccaat cgctcagtgt ccaccaacct aatgtgtttt ttgtcttctc tatatcacta      3420
     tctgtctagt ggtaagcaag tagacactat ctataccgat ttcaaagcgg catttgacag      3480
     tatacctcta tcattacttg ttgctaagct tcgaaaacta ggtttcggtg gctctatatt      3540
     gccgtggttc aactcctatc ttgagaatcg ttcatatgca gttaaaatct gtggctcttt      3600
     ctctgaatgt tttcttagtt cttcgggtgt ccctcaaggt agtgtcctta gtcccttact      3660
     gttcattctc ttcctcaatg actgtacttc gatccttcct cctaacggct tcttgctata      3720
     tgcggatgac gttaaaattt ttcttcctgt atcttctaca gctgattgtc tagtccttca      3780
     atcctggctc tgtaaattct ctacatggtg tgcttctaac ggtttagtcc tgtgtcctga      3840
     aaaatgttcc gtcttgtctt tcttccgatc ttctacaagt ataactcatg cttatagtgt      3900
     ctgtgatgcc cctattcccc gtgcgtcctt gtctaaggat cttggcgtct tctttgaccc      3960
     gagtctttct ttcaaggagc acacggacta tgtcatcaac aaggccaaca aaagtcttgg      4020
     ttatatttgt cgcatgtcca ctgaaattcg tgatcccttt tgtcttaagt ccctttattg      4080
     ttgttgggtc cgttccgtac tggaatatgc ctgtgtcatc tggtctcctg tccaactatc      4140
     tctgctccaa aggattgaga ggatccagag acgttttaca aggatcgtat ttcgtaggtc      4200
     gctgggtcat cactctattc cgcttccttc gtatgacgat agatgcactc tattaggcct      4260
     tgccaagttg gagcaccgcc tctcggtcgc tcaggcttct ttcgtcgctg gcatattgct      4320
     caatacgatt gatactcctt cacttctgtc gcgcttacat ttgtatgcac cttgtcgcac      4380
     cttacgttat cgttttcgtc tccagttacc tatatgtcgt acacgttttg ctcgcaatga      4440
     gccttttgta agagctatgt cgtcttttaa tagtacttct gatctgttcg atttcaacat      4500
     atcctatcct gtctaccgat cccgtcttcg ctccttttcc gtaccataaa ctccttccaa      4560
     ctccttcgtg aataattgta tactatagtc agtaagcact attgctgtaa cccaacgtgg      4620
     ccgagcaatt aataaaataa aaataaataa ataaataaat aaata                      4665
//
ID   GYPSY34-LTR_AG repbase; DNA   ; ANG   ; 271 BP.
XX
AC   .
XX
DT   16-APR-2004 (Rel. 9.03, Created)
DT   16-APR-2004 (Rel. 9.03, Last updated, Version 1)
XX
DE   GYPSY34-LTR_AG is an LTR of retrotransposon GYPSY34_AG - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; Gypsy clade;
KW   MDG3 lineage; GYPSY34-I_AG; GYPSY34-LTR_AG; 4-bp TSD GYPSY34_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-271
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY34_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(3), 61-61 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY34-LTR is a long terminal repeat of GYPSY34_AG (its internal
CC   portion is deposited as GYPSY34-I_AG).
XX
SQ   Sequence 271 BP; 74 A; 73 C; 54 G; 70 T; 0 other;
     tgtaacgtcc ggactaatat cgcccactgt gcactcaacc cgaaccccga acgcagcggt        60
     ataaacgcat tataccttga ccgctggagc acccggtgtg ctagatgaac tgtcatagaa       120
     taaagctctc ttcttggcgc gacattgaac tgaacagacg taagccactg acttctgcgt       180
     ataattattt gtgtgctctt ccgaattgtg ctaaatctta ttaaaacggc caattaacct       240
     tccgccaacc gtaaaacgct tggtcgttac a                                      271
//
ID   RETRO935_AG_LTR repbase; DNA   ; ANG   ; 350 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO935_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; NINJA; RETRO935_AG_I;
KW   RETRO935_AG_LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-350
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO935_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 21-21 (2002).
XX
CC   [1] (Consensus)
XX
CC   Related to NINJA from Drosophila simulans. 5 bp target site
CC   duplication.
XX
SQ   Sequence 350 BP; 88 A; 72 C; 93 G; 97 T; 0 other;
     tgtcacttat ggtgacgacg cgatcgttcg aggatcgaca aggagcgtcc gtattttagc        60
     tagcggccgc tagaggtctc ggactggacg ataaacgttc ggactgaacg aaagggatcg       120
     accgagcgtt tgacggatag ccggtgaccg catggactgc gaaatagggc tttctttttg       180
     atcccggacc tgcgtggaag cggacgaatt tttagttttt tcttcactct ctcggctact       240
     aaaattttgt gctgttaaag gcaaaataaa ataatcctga attacttaaa aaagccgttt       300
     gtttggtaaa ttatttatct gcaggccggg cgttgtgcta acgcgcaaca                  350
//
ID   RETRO937_AG_LTR repbase; DNA   ; ANG   ; 366 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO937_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; NINJA; RETRO937_AG_I;
KW   RETRO937_AG_LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-366
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO937_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 22-22 (2002).
XX
CC   [1] (Consensus)
XX
CC   Related to NINJA from Drosophila simulans. 5 bp target site
CC   duplication.
XX
SQ   Sequence 366 BP; 119 A; 74 C; 79 G; 94 T; 0 other;
     tgttattgtt taacacagga aaacatcgaa tgtcagcgca agtgtcaagc agtgacattt        60
     gacccacgtt actgctcgac tgtgggactg ctcgactaac gatgaggatc gcaagcccgc       120
     gaatttgcaa tggtggaaaa gccataaaag ggaaatttgg gaaagcactt tctctttttc       180
     tcgtcatcac cgcggaacca gaagcagtgg aattttttta accactttgt tataagtaaa       240
     tttacagtac caccgttacg tactgcgtta atagaattca ataaagtgaa gttaagagaa       300
     cctaactaac gtcgcgagtg aatcatttcg ggaaaaaaaa tatcaccgga cgttgctaac       360
     gcaaca                                                                  366
//
ID   GYPSY2-I_AG repbase; DNA   ; ANG   ; 5178 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   21-JUL-2005 (Rel. 8.04, Last updated, Version 2)
XX
DE   GYPSY2-I_AG is an internal portion of the GYPSY2_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; gag;
KW   reverse transcriptase; integrase; 4-bp TSD; AP protease;
KW   GYPSY2-I_AG; GYPSY2-LTR_AG; GYPSY2_AG; Gypsy clade.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5178
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "GYPSY2_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 75-75 (2003).
XX
CC   [1] (Consensus)
XX
CC   GYPSY2_AG is a family of gypsy-like LTR retrotransposons.
CC   GYPSY2-I_AG, an internal portion of GYPSY2_AG, is flanked by
CC   GYPSY2-LTR_AG LTRs. The GYPSY2-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 20 copies; they are
CC   ~1% divergent from the consensus sequence.
CC   The consensus sequence encodes the 1408-aa Gypsy1_AGp poliprotein
CC   (predicted by FGENESH) and composed of the putative gag-like
CC   (pos. 1-300), AP protease (pos. 325-410), reverse transcriptase
CC   (pos. 514-681), and integrase (pos. 1030-1200) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(846..1790,1875..5153)
FT                 /product="GYPSY2_AGp"
FT                 /translation="MLHSPPVRDVSTPDGVTPSADPAASGSKSPHVPTPPV
FT                 PNTPRVPGPSACDAMFMPPESQIDTLNAMQLKPPEMDTTDIQTFFFALENW
FT                 FDAWNITTNQHIRRFNILRTRIPLRVLPELRPLLENIRQYATDRYEVAKRA
FT                 IIEHFEESQRSRLHRLLAEMNLGDRKPSQLLAEMRRAANGAMTDSMLVDLW
FT                 IGRLPPYVQSAVIATNTDTNDRAKVADSVMDSFALYHRTGPYQTIHEVRNE
FT                 DFERLSRHVTELGQRLDAVLSKLNERERARPRSRTRQRQPNQDAVTPSGHC
FT                 YYHTQYGQAARNCRAPCSFNNRRYRLVITDPKTNIKFLIDTGADVSVIPRQ
FT                 HSSVPSKPSTMKLFAANSTPIQVYGESLYTLDLGLRRSFLWNFIIADVGTA
FT                 IIGADFLQHFHLLVDLRKKCLVDALTNVRSTGVPSQNPSEPTVKVCDSTSP
FT                 IATLLKEFPGLTALSTPGTLLQSEVTHRIETTGQPTFARPRRLPPEKYAAA
FT                 RKEFESLVQLGVCRPSNSSWASPLHMTKKADGTWRPCGDYRALNAKTVPDR
FT                 YPLPFLQDFTMHLQDKIIFSKVDLHKAYHQIPIHPDDIAKTAITTPFGLYE
FT                 FTTMPFGLRNAAQTFQRLIHDVLRGLEFVFPYIDDMIVASTSEAEHHEHLR
FT                 QLFERLEKHQLAINPAKCEFYRNEISFLGHLVNASGIRPLPDRVQAISELP
FT                 QPTTIMELKKFLAMINYYRRFLPHALETQGILLEMTPGNKKKDRTPLTWSL
FT                 EASEAFAQCKEQLKRATLLAHPVKNAELSLWTDASDFAAGAVLHQRTNEDL
FT                 QPLGFFSKRLEKAQQKYSTYDRELTAIYLAIRHFRYQLEGREFCIYTDHKP
FT                 LTFAFRQTHDNASPRRARQLDFIGQFSTDIRHIAGKDNVTADLLSRIETVH
FT                 ATPTIDYERLAEEQERDPELSDILSGKIQTDLFLQKTPIPGSPKSLYADCP
FT                 GGIIRPYITRSFRTQLLHAVHDLSHPGARATARLITERFVWLNARKESQDF
FT                 ARNCLACQRAKVGRHVKSPLIPYPATTARFSHINVDIIGPFPISNGNRYCL
FT                 TIIDRFTRWPEAIPISDITASTVVSALLFHWIARFGVPAHVTTDQGRQFES
FT                 SLFKELTKALGTKHIRTTAYHPQANGIIERWHRTLKAAITCKDTARWSEHL
FT                 PLILLGLRTTFKNDINASPAELVYGTTLTIPAEFFIAKPQNALADQSDFAK
FT                 TLEETMSSIRPQSTAWHTNRTPFVHSDLNKCTHVFIRDDTVRPALTTPYHG
FT                 PYKVLTRNPKSFQILLRGQPTLVSIDRLKPAYGAEEEATPAPQCSWEGLTT
FT                 NLLPPTTDHSETLPLPDVQANSDRRDATAASKPTSREQPVRNQTTPAPPSH
FT                 PTTSRQTDRAAVDAPPPSILRRNDQTVSTGVTRSQRKVIIPLRYR"
XX
SQ   Sequence 5178 BP; 1352 A; 1631 C; 1174 G; 1021 T; 0 other;
     actggtgacc ccgacgtgat cgcgtgcgcg agtgagtgag tggtaacctg acgaacaccg        60
     tgtccagccg agaaaaaacg tgtttccatt gttccacggt ccggaccgac ggcaacgttc       120
     ccccccatca tcgaggagcg gccgaccacg aaggaggcac cacgcaagcg cagccagcga       180
     aaaaaaaccc cgtgcacaaa ccccgaaccc acgtgagtgc aaatcgacac cgaaggtggc       240
     cgacagtgag gaacactgtt caggaacatt tttacccgac ggagcgaccg atcctagcgg       300
     aaaagtttcc tctcggtgct gagcgatcgc cgaacatttt gctgacacac cccgcgccgt       360
     gtcgcacacc cgccgagcat tttggtaccc gtacgtgttt gcgcacccgc cgatcataac       420
     ctcacacgta ccgccgagcg cgctccagac ccacgcggtt tttgtgtgtg caccgtgtgt       480
     gtgtgtgtgt gtgtgggtga atgtgcgcag gccgacgccg agcggattgc gtcagaattt       540
     tgctcgagct acgttcgtca tttttttcga ccgtgcaccg aagacgtcgt cagcgcacgc       600
     agccatcgtt ctcttctcgc cgacaccacc gaccgaacgc caccgaagat catcgcccct       660
     cgtttctcac accaccggcg tcatcgacga acgcagccaa cgagcgacta atcctaacac       720
     gatcgaccgc gtgtgcggat ttttcgtcgc cgaaggatcg acctagccaa cctccagctg       780
     gacttgcttg cgcccccgcc actaaggtaa gatccaccct tttttaacta accttagtcg       840
     taaggatgtt gcacagtccg ccggtccgcg acgtatcgac tcccgatggc gtaaccccga       900
     gtgccgatcc agccgcgagt ggatccaaat cgcctcacgt accaacaccg cccgttccga       960
     ataccccgcg cgtaccaggg ccgtccgcct gcgacgccat gtttatgccg cccgaatcgc      1020
     agattgacac tttgaatgcc atgcagctga aaccaccgga gatggacacc actgacattc      1080
     aaaccttttt cttcgcattg gaaaactggt tcgatgcgtg gaatatcacc acgaaccaac      1140
     atattcgccg ttttaacatt cttagaacgc gtataccgct tcgtgtcctt cctgagcttc      1200
     gccccctgtt ggagaacatt cgacagtacg ctacggaccg ttacgaggta gcaaagcgtg      1260
     caataattga gcactttgaa gagtcgcaac gaagccgctt gcatcgtctg cttgccgaaa      1320
     tgaacctcgg ggaccgaaaa ccatcgcagc tattagcgga gatgcgccgc gccgcaaatg      1380
     gagcaatgac ggactctatg ctggtagatt tgtggatcgg ccgtctcccg ccatacgtcc      1440
     agtccgccgt tattgccact aacacggata ccaacgatcg agctaaagta gcagactctg      1500
     ttatggattc gttcgcgtta taccaccgaa cgggcccgta ccaaaccatc cacgaagtac      1560
     gcaacgagga cttcgaacgt ctttctcggc acgtaacgga attaggtcag cgcttggacg      1620
     ccgtactgag caagctcaac gaacgagaac gcgcgcgacc acgctcacgt acccggcaac      1680
     gtcaaccgaa ccaggatgcg gtaacaccca gcggacactg ctattaccac acgcagtacg      1740
     ggcaagcagc gcggaactgt cgtgccccct gctccttcaa caatcggcgg cagggtagta      1800
     actcggccac tgcttccgat tgacgcttaa ccagaggcca acctcaacag atacacgtac      1860
     tttcgaccca tagctatcgt ctcgtaataa ccgatccaaa aactaacatc aaattcttaa      1920
     tcgataccgg tgcagacgtt tcagtaatcc ctcgacaaca cagttccgtc ccgagtaaac      1980
     cctccaccat gaagctgttc gccgctaatt ctacaccaat ccaggtttac ggagagtcgc      2040
     tctatactct cgatttggga cttcgccgat ctttcctttg gaacttcatc atcgcagacg      2100
     tggggacagc gattattgga gccgattttc tccaacattt ccatctgctc gtggacttgc      2160
     gcaaaaaatg tcttgtcgac gccttaacga acgtacgttc taccggagtg ccgagccaaa      2220
     acccgtcgga accaaccgta aaagtatgtg attccacctc accgatcgcc actctcctaa      2280
     aggaatttcc cgggttaact gcactatcca ctcctggcac cttactgcag tccgaagtga      2340
     cgcaccgaat cgaaacgacg gggcaaccaa cattcgcaag acctcgccga ttaccacccg      2400
     aaaagtacgc agctgcccgc aaagagttcg aatcactcgt ccagctcgga gtgtgccgcc      2460
     cctcgaatag cagctgggcc agcccgctac atatgacaaa aaaggccgac ggcacctggc      2520
     gcccttgtgg tgattaccgc gccctaaatg caaaaaccgt acccgaccgt tatccactac      2580
     cgtttttaca ggacttcacg atgcatttgc aagacaagat catattttcc aaggtcgatt      2640
     tgcacaaagc ataccaccag ataccaattc atccggatga tatagcgaag acagccatca      2700
     cgacaccctt tggactttac gagttcacta ccatgccttt cggattgagg aacgcagcgc      2760
     aaacattcca acgccttatc catgatgtcc tacgaggact cgagtttgtt ttcccgtata      2820
     tcgacgatat gatcgtagca tcaacgtccg aggcagaaca ccacgaacac ttacgccaac      2880
     ttttcgaacg attggagaag caccaactag ccatcaatcc agccaagtgc gagttctacc      2940
     ggaacgagat ttcctttctg ggccatctgg tcaacgcttc tggtattcgt cctctccccg      3000
     atcgagtcca agccatcagc gagctgccac agccaacgac gattatggag ttgaagaagt      3060
     tcctcgccat gataaactac taccgacgtt ttctgccgca cgccctggaa acgcaaggta      3120
     tacttctcga gatgactcca ggtaacaaaa agaaggacag aacgccatta acctggtcgc      3180
     tagaagcttc cgaagcattc gcccaatgca aagagcaact gaaacgtgca acgttattgg      3240
     cacatcccgt gaagaacgcc gaactttctc tatggaccga cgcttcagat ttcgcagccg      3300
     gagccgtact tcaccaacgc accaacgaag acctgcaacc actaggcttc ttctcgaaac      3360
     gtctcgaaaa ggcacagcaa aagtactcga cctatgaccg agaacttacc gccatctatc      3420
     tcgccatacg acacttccga taccagctag agggtcggga attctgtatt tatacagacc      3480
     acaagcctct aaccttcgcc ttccgacaaa cgcacgacaa tgcctcacct cgacgagccc      3540
     ggcagttaga cttcattggc cagttttcca ccgacatccg tcacatcgcc ggaaaagaca      3600
     acgttacagc cgatctgctc tcccgcatag agacagtgca cgcgacaccg accatcgatt      3660
     atgagcgatt agcagaagaa caagagcgcg accctgaact ttccgacatt ctcagtggga      3720
     aaattcagac ggacttgttc ctgcagaaga caccaatacc gggaagcccc aagtcactct      3780
     acgccgactg ccctggaggt atcatcagac cgtacatcac ccgatcgttt cgaacacaac      3840
     ttctccacgc cgtacatgat ctcagtcatc ccggagcccg cgccacagct agactaataa      3900
     cagagcgttt cgtgtggctc aatgcaagga aggaatccca ggacttcgct cggaactgct      3960
     tagcctgcca gcgcgctaag gtaggaaggc acgtcaaaag ccccttgata ccgtaccctg      4020
     caacaacagc gaggttcagt catatcaacg tagacatcat tggaccattt cccatcagta      4080
     acggtaaccg atactgcctt acgataatcg accgatttac tcgctggcca gaagcaatac      4140
     cgatctcgga tatcaccgca tctaccgtcg tatcagcact actattccac tggatcgccc      4200
     gattcggagt tccggcgcac gtaacaacgg accaagggag acaattcgaa tcctccttgt      4260
     tcaaagagtt gacgaaagcc ctaggaacga aacacatccg tacgacagcc tatcacccgc      4320
     aggcaaatgg aataatcgag aggtggcacc gcactcttaa agcagcaatc acctgcaaag      4380
     acaccgcaag atggagcgaa cacctaccgc taatactgct tgggctacga accacgttca      4440
     aaaatgacat caacgcctcg ccagccgaac ttgtgtatgg aacgacgttg accatcccgg      4500
     cagaattctt catcgcgaaa ccgcaaaatg ccctcgccga ccaatccgac ttcgccaaaa      4560
     cgttagagga gacgatgagc agcattcgac cacagagcac cgcttggcat accaaccgca      4620
     caccgttcgt gcattccgat ctgaacaagt gtactcacgt gttcatacgc gacgacaccg      4680
     tccgacctgc actaactaca ccttaccacg gtccatataa ggttcttaca cgcaatccta      4740
     agtcttttca gatactccta cgtggacagc caacgctggt ttcgatcgac cgcttaaaac      4800
     cagcgtatgg cgcagaagag gaagccaccc cggccccgca gtgctcgtgg gaagggctaa      4860
     cgacaaacct gctgccgcca acaaccgacc actcggaaac tctgccgtta ccggacgtcc      4920
     aggcaaattc ggaccgcaga gacgccaccg cagcctccaa accgacgtcg cgcgaacaac      4980
     cagtgcgtaa tcagacgaca cccgcaccac catcgcaccc gacgacatcg agacaaaccg      5040
     accgagccgc cgtcgacgcc ccaccaccct ccatcctacg ccgcaacgac cagacggtat      5100
     cgaccggcgt caccaggtct cagcggaagg tcatcatacc tctacgttac cggtgacacc      5160
     gctctaggag gggagtac                                                    5178
//
ID   BEL5-I_AG   repbase; DNA   ; ANG   ; 5282 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   BEL5-I_AG is an internal portion of the BEL5_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   BEL; LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; integrase; 5-bp TSD; Bel clade;
KW   RING Zn-finger; peptidase; BEL5-I_AG; BEL5-LTR_AG; BEL5_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5282
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A., Jurka J.;
RT   "BEL5_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(4), 69-69 (2003).
XX
CC   [1] (Consensus)
XX
CC   BEL5_AG is an young family of Bel/Pao-like LTR retrotransposons.
CC   BEL5-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL5-LTR_AG
CC   LTRs. The BEL5-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 20 copies; they are ~1% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes one 1723-aa BEL5_AGp Bel-like
CC   protein
CC   (pos. 93-5261).
CC   BEL5_AGp is composed of the peptidase (pos. 118-200), RING
CC   Zn-finger
CC   (pos. 300-375), reverse transcriptase, and integrase (pos.
CC   1414-1600)
CC   domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="BEL5_AGp"
FT                 /translation="MAEARKVKSLRIQQTATQLSIQAIHTFSKSYNKETQR
FT                 AEAIIRKQNLQKQYAKFIDLQDELLPLDEGNEAENLALRQTVESAYYDAEA
FT                 NLASAVEANDKKPCVPASNIKLPDVKLPVFDGKPQNWSSFHSIFVAMIDSA
FT                 ELYSGVQKLYYLRTSLSGPALQLIQSVPISEENYSVAWNLLLNHYNHPKRL
FT                 KQLHVEALFEDAALKKECANELRKLIENFEANVNALTQLGEPTAQWDTLLI
FT                 QMLSRQLDPSTLRSWKEHSAEKKIDSYSDLVAFLYRRVGVLEVLPSTSSGK
FT                 PPKQRVFATTTMPNNNTKGCACCNRDHPVYTCDEFKKLSLNAKQKVITQHK
FT                 LCYNCLRPGHHLRDCKSASTCKSCHKRHHTQLCSLPQPSPTVPSSEEDQRD
FT                 PPTTLASTSVVESITCASAGQHKTVLLATATVIIVDDEGHKHNARVLLDSG
FT                 SESCFITENLAQQMKSTRERSNLCISGISSTNTTAKQSIRATLRSRVGRYF
FT                 ANLQFFILPRVTGNLPSSSIDTTGWNLPDNIFLADPHFDCIGRIDVLIGAE
FT                 VFFDIMRPAGRILLGKDQPVLVNSELGWIVSGPAVSTLTPTSQASSITVNH
FT                 ASTTVQDVHKLMERFWAIEEGEIVNAQSNEHAACEEHFRRTVSRNSSGRYV
FT                 VRLPLKEHLLTKLVDNRKAAVRRFHFLQSRLSSNNEFRNSYSSFIDEYAEL
FT                 GHMKRISEEEYNNTNQHHYYLPHHAVTRQESLTTKLRVVFDASSKTSSGIS
FT                 LNDVLMVGPTIQDDIRSIIMRARKHSIMIVADIKMMYRQVLVDARDTSLQL
FT                 IVWKPTPSESLQTYKLCTVTYGTASAPYLATRVLSQLADDEGSSYPIAAKV
FT                 LKKDFYVDDLLTGTSTAAEASEVITQLTALVSKGGFTLRKWATNDEQVRQT
FT                 ISKDKLSEDESFCFDRDQIIKTLGLHWHPLNDSMTYRIKPFEEKLITKRST
FT                 LSGIARLFDPIGLIGPVVTKAKIFMQSLWTLKASDGSIWNWDTELPEQLQK
FT                 QWLSFKNELNLLNTIQIQRCVLLNEATSVQLHIFADASQTAYGACAYLRST
FT                 NKAGQIKTSLVASRSRVAPLKSQSIPRLELCSALVASELYKSIQQAMQLDA
FT                 DIYFWLDSTVALYWIQASPSKWNTFVGNRVSKIQQATSSCTWSHINGQENP
FT                 ADHISRGLTASELVNCDLWWNGPPWLQLDQEQWPKPQLSSQLPSEVSIEGR
FT                 SITTTAAATKSPPCDAILLVNELLSKFSDYHKLLRVIAYCFRMRTKRDSSQ
FT                 ETVVISTDELWNAEIRILQVVQRDIFEKEWTQLRQNSPVSNKSRLKWFHPF
FT                 LCDDNLIRIGGRLSKSNQPFESKHQILLSAGHPLAEMLIRHLHKKHHHAAP
FT                 QLLITILRQKYWVIGARSLAKRICHECVPCCRARPRLLEQFMAELPTSRIT
FT                 PSRPFSIVGVDYWGPIGLSPIHRRASSGKAFVAVFICFATKAVHLELVANL
FT                 TTAKFIQAFRRFVARRGLCSDIHSDNGRNFLGASRELRALVTSKQHRIEII
FT                 QECTSQGMRWHFNPPKASHFGGLWESAIHSAQKHFFRVLGKTTLPQDDMET
FT                 LLCQIECCLNSRPLVPLSDDPSDLEPLTPGHFLVGSNLKAVPDNKLEDIPS
FT                 NRLKHYQLVQKLLQQIWTRWSAEYLATLQPRSKWLKPPVKIDVGQLVLVKD
FT                 ESTTPLHWPLGRIIKTHPGDDGVARVVTLKTASGEYTRPIAKLCLLPVTSM
FT                 VQN"
XX
SQ   Sequence 5282 BP; 1604 A; 1294 C; 1086 G; 1296 T; 2 other;
     ttttggtcct tcgaatcgcg gatcgacgat tgatcatcat ttagttcttc gagcaacgaa        60
     ttgtggtcat tcgaagagtg taaacaaacg aaatggcaga ggcacgtaag gtaaagtcgc       120
     tgcgtatcca gcaaacggcc acgcaactct ctatacaggc aattcataca ttttccaagt       180
     cttataacaa agaaacgcaa agagcagagg caattattcg caaacaaaac ttacaaaaac       240
     aatatgcaaa attcattgac ctgcaagatg aactgttgcc cctagatgaa ggcaatgaag       300
     cggagaatct tgcgcttcga caaaccgtgg aatcagcgta ctatgatgct gaagctaatt       360
     tagctagtgc tgttgaagca aatgataaaa aaccatgtgt accagcatct aacatcaagc       420
     taccggacgt gaagcttccc gtcttcgatg gcaagccaca aaattggtct agctttcatt       480
     cgatctttgt cgcgatgatc gatagtgcgg agctgtattc aggcgtacaa aagttgtatt       540
     acctgcgtac atcgctatcc ggcccagcac tccagctaat acaaagcgtt ccaatcagcg       600
     aagaaaacta ttccgtggca tggaatctgt tgctcaatca ctacaaccac ccaaagagat       660
     tgaagcagtt gcatgtggaa gcattatttg aagatgctgc gctgaaaaag gaatgtgcaa       720
     atgaactacg caaactgata gaaaatttcg aagccaatgt aaatgcatta acccaattag       780
     gcgaaccaac tgctcaatgg gatacgcttc taatacaaat gcttagccgt cagctcgatc       840
     cgtcaacact acgaagctgg aaagaacatt cggcagaaaa gaaaatcgat tcgtatagtg       900
     atttggttgc gtttctgtac cgtcgagtag gagtgttaga agtgttgcca tcaacgtcat       960
     caggtaaacc acccaagcaa cgtgtatttg caacaaccac aatgccgaac aacaacacca      1020
     agggttgtgc ttgttgcaac agagaccatc ctgtgtacac gtgcgatgag tttaaaaaac      1080
     tatccttaaa tgcaaagcaa aaggtcataa cacagcacaa attatgttat aattgtcttc      1140
     gtcctggtca tcatctacgt gactgcaaat ctgccagcac ctgtaagagt tgtcacaagc      1200
     gccatcatac acaattgtgt tctttaccac aaccctcgcc tactgtaccg tcatcagaag      1260
     aagatcaacg agatcctccg accacgttag catcaacatc ggtcgtcgag tcgatcacat      1320
     gtgcttcagc aggtcaacat aagacagtcc tcctggccac tgccactgtc ataatcgttg      1380
     acgatgaagg ccacaaacac aacgcacgag tgctgctaga ttcaggaagt gagagttgtt      1440
     ttatcactga aaatctagcc cagcaaatga aatcaacaag ggagagaagc aatctatgca      1500
     tctctggaat cagttccacc aacacaaccg caaagcagag catccgagcg acacttcgct      1560
     cgcgggttgg gcgatacttt gccaacctgc agttcttcat actaccaaga gtcacgggga      1620
     atcttccatc gtcatcgatc gacaccacgg gatggaacct gcctgacaac atctttcttg      1680
     cggaccctca cttcgattgc atcggccgaa ttgatgtctt gatcggcgcg gaggtctttt      1740
     tcgacattat gagaccagct ggacgaatac ttctcgggaa ggatcaacca gtccttgtca      1800
     actcggagct cggatggatc gtatcggggc cagccgtaag tacactcaca cctacttcac      1860
     aagcttcttc tattacagtc aaccatgcat ctacaacggt tcaagatgtt cataaactta      1920
     tggaacggtt ctgggmaata gaggaaggtg aaatagtcaa cgcacaatct aatgaacatg      1980
     cagcgtgcga agaacacttt cgtcgcaccg tttcacgaaa ttcttccgga cgctacgtcg      2040
     tgcgtcttcc actgaaagaa catcttctca caaaactagt tgacaatcgc aaggcagcag      2100
     ttcgtagatt tcattttttg caatcccggc tcagttctaa caacgaattt agaaacagct      2160
     acagctcatt tatcgatgaa tacgctgaac tggggcacat gaagcgcatt tcggaggaag      2220
     aatataacaa cacaaaccaa catcattatt accttccaca ccatgcggtg acgcgtcaag      2280
     aatcactaac aaccaagttg cgcgttgtct ttgacgcctc cagcaagaca tctagcggca      2340
     tatcgttgaa cgatgttttg atggtagggc caacaattca ggacgatatc cgatctatca      2400
     tcatgagagc acgtaaacat tcgatcatga tagtcgctga tattaaaatg atgtaccgtc      2460
     aagtgctcgt agatgmtcgt gatacatcgt tacaactcat cgtatggaag ccaacaccgt      2520
     ccgaatcact gcaaacatac aaactgtgta ccgtcacata cggtacagct agtgcaccct      2580
     atttagcaac acgagtattg tcacaacttg ccgatgacga aggcagtagc tatcctattg      2640
     cagccaaggt attgaaaaaa gatttttacg tcgatgattt acttaccggc acttccaccg      2700
     cagccgaagc ttccgaagta attacacaac taactgcgct tgtttccaaa ggtggtttta      2760
     ctctacgtaa atgggccacg aatgatgaac aagttcgcca aaccatctca aaagacaaac      2820
     tttcagaaga cgagtcattt tgtttcgatc gcgaccagat tatcaaaact cttggtttgc      2880
     attggcatcc attgaatgac tccatgacgt atcgcatcaa accatttgaa gaaaaactga      2940
     tcacaaaacg ctcaacgtta tcgggaattg cacgattatt cgatccaatc ggccttatcg      3000
     gaccagtagt cacgaaggca aaaatattca tgcaatctct ctggacactt aaggccagcg      3060
     atggctcgat atggaactgg gatactgagc ttccagagca gctccagaaa caatggctat      3120
     catttaaaaa tgagctcaac ttacttaaca caatacaaat acaacgatgc gttctactaa      3180
     atgaagctac tagcgtccaa ttacacattt ttgccgacgc atcccaaaca gcatacggcg      3240
     cttgtgccta cttgcgctca actaacaagg caggccaaat caaaacatca ctagtagcat      3300
     ctcgatcgcg ggtcgcgcct cttaaatcac aaagcattcc cagactagaa ctatgcagcg      3360
     ccctcgtagc aagtgagcta tacaaatcta tccagcaagc tatgcagcta gacgccgata      3420
     tctatttttg gcttgacagt acagtcgctc tttactggat tcaagcatca ccgtcgaaat      3480
     ggaacacctt tgtcggcaat cgtgtgtcca aaatacaaca agccactagc agttgtacat      3540
     ggagccacat aaacggccaa gaaaatcctg cagatcatat ttcacgggga ttaactgcaa      3600
     gcgaactcgt caactgtgac ctttggtgga atggcccgcc atggctccaa ctagatcaag      3660
     agcaatggcc caaaccccaa ctgtcatctc aactaccatc agaggtttca atagaaggtc      3720
     ggtcgatcac tactacagct gctgccacca aaagtccccc atgcgatgca atactgttgg      3780
     taaacgagtt gctatccaag ttttctgact accacaaatt gctacgagta attgcatatt      3840
     gctttcgaat gagaactaaa cgtgattctt cgcaagaaac tgtcgttatt agcacagacg      3900
     aattatggaa tgctgaaatc agaatcttgc aagtggttca aagagatatc tttgaaaaag      3960
     aatggactca gctccgtcaa aacagtcctg tttccaacaa atccagacta aaatggttcc      4020
     atccgtttct ttgcgatgat aatcttatcc gcattggtgg acgtttatca aaatctaatc      4080
     aaccatttga aagcaaacat caaatattgt tgtcagcagg acatcctctg gcagaaatgc      4140
     tgattagaca cttgcataaa aaacatcatc atgccgcacc gcaactattg atcaccatcc      4200
     ttcgtcaaaa gtattgggtc ataggggcca gatccctagc taaacgcatt tgccatgaat      4260
     gcgtaccttg ttgtcgtgct cgtcctcggc tgctagaaca atttatggca gaactaccaa      4320
     cttcacgcat aacaccaagc cgaccattct caatagtggg agtggattat tggggtccca      4380
     tcggtctatc acccattcat cgccgtgcat catctggtaa agcatttgta gctgtcttta      4440
     tctgtttcgc tacaaaggct gttcatctcg agctcgtcgc aaaccttacc acagccaaat      4500
     tcatccaagc atttcgtcgt ttcgttgctc gtcgtgggtt atgcagtgac attcacagcg      4560
     acaacggacg gaacttccta ggcgcctcca gagaactgcg agcattggtg acgagcaaac      4620
     aacatcgaat tgaaatcatc caagaatgca cgtcacaagg aatgcgctgg catttcaatc      4680
     caccgaaagc gtcacacttt ggtgggctat gggagtcagc aattcattct gctcagaagc      4740
     attttttcag ggtccttggc aaaacaactc tgcctcaaga tgacatggaa acgttgcttt      4800
     gtcaaattga atgctgcctc aactcacgtc cactggttcc tctcagtgac gatccgtctg      4860
     acttagagcc actaacacca ggccattttc tggtcggaag taatctaaag gcagtccctg      4920
     ataacaaatt agaggatata ccatccaatc gtcttaaaca ttaccaactg gtacaaaagc      4980
     ttctacagca gatttggaca agatggagcg cagaatattt ggcaactctt cagcctagga      5040
     gcaaatggct caaaccacca gtaaaaatag acgttggcca acttgttttg gtcaaggacg      5100
     agtcaactac cccattgcat tggccgctag gacgcatcat caaaacacac ccaggcgatg      5160
     atggagtagc acgagttgtg acattgaaga cagcttctgg cgaatacact cggccaattg      5220
     cgaagttgtg tcttcttcca gtaacttcaa tggttcagaa ctaacgtctg aaggggccag      5280
     ta                                                                     5282
//
ID   CR1-3_AG    repbase; DNA   ; ANG   ; 5485 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   CR1-3_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   Non-LTR retrotransposon; reverse transcriptase; CR1 clade;
KW   AP endonuclease; CR1-3_AG; DNA/RNA-binding; PHD finger.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5485
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-3_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 14-14 (2003).
XX
CC   [1] (Consensus)
XX
CC   CR1-3_AG is a family of CR1-like non-LTR retrotransposons.
CC   The CR1-3_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~50 copies identified in the
CC   sequenced portion of the genome. Given the ~3% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-3_AG occurred less than 2 million years ago.
CC   The 3' terminus of CR1-3_AG is composed of the ATAA
CC   microsatellite.
CC   CR1-3_AG encodes two proteins: a 418-aa CR1-3_AG-ORF1p
CC   (positions 1057-2310) and 910-aa CR1-3_AG-ORF2p (positions
CC   2314-5043). CR1-3_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (positions 5-40). CR1-3_AG-ORF2p is composed
CC   the AP endonuclease and reverse transcriptase domains.
CC   Putatively, the last protein is translated through the ribosomal
CC   frameshift.
CC   PKLFNSVVKNIPGTITPTLQQYPSLAASLSVSANEPSSFTNMPPxYNPQTPLLRGSGSPLDSDTLDTIPH
CC   TDTRMWLFFTRFSPSVTTEQISLMVQVRLALDKRDVFVHRLTKLGADTSTLSFISFKVGIPATLRNKALS
CC   PKTWPSALTYREFRDYRTNNYNTNTCATTETNSMLDQNVTLATDTYHNPLSHSGGSAAMPTTTTDTLAQP
CC   VTISSPAMTTTDTALFTNEPHLDLNERMLVTTTPTRSPPECLAAPKKRPKRGNAKRTDESADAGPSDE
CC   CVPVAQRKSGPDWSNASLRRLKKIKSKAYADYSRTRSSLHRRIFFDALNNYRRxNRVLYRSFIRRTERQL
CC   FSKPTRFWSFWNKRRNIRSIPPSMSYNGxTSIDTSDICNTFANRFADAFTLPVHNPNTLAEATRNTPSDA
CC   IDFIIPTIDEALIARTLNDIKPSTSSGPDNIPAYILKHCRQSLAPILAKIFNDSLMRGTYPASWKHARMV
CC   PIHKKGSRLHASNYRGIVSLCACAKVFELILYNPLLTAVQNYMSPSQHGFLPRRSSTTNLAEFVGYCFDN
CC   MDRGTQVDAVYIDFRAAFDSISHDILLSKLKKLGFLDWHITWLRSYLTGRSYYISIGSHRSHSFTSSSGV
CC   PQGSNLGPLLFLIYINDLSFVLPPGQHLMYADDVKIFAPVRNDSDCVRLQTILENLDSWCSRNALQVCAD
CC   KCQCISFSRARHPITFTYTMLNTALARTTCIRDLGVLLDQKMSFRPHIDSVVAKGNQLLGLITRTCSEFT
CC   DPMCVKSIFCAIVRSCLEYCCPIWCPLGVGDINRLEAIQRRLTRYAVRLLPWQSHHARPTYHQRCLLLGH.
XX
SQ   Sequence 5485 BP; 1459 A; 1439 C; 1091 G; 1489 T; 7 other;
     tcagctatca tgtagcgcat cctcatccct agcgccgggc ggggtgggga atcgcgacat        60
     gatagagtga acggccactt tccccgcgct gtgtgtgtgc gtgtgtgtga cgagacccga       120
     aaacgcgaga caaatttcgg cacataaaaa aaaaaatatt gtcactatac actgtgctac       180
     atgatgctta gaaggtcgtt gaagcatgaa acatgttcaa attaaaaaat attagattag       240
     tgttagacgt tctgatacga ttgttttaaa taggcttcta caccctcaac tggcaggggc       300
     atcgaatggt ctcatcagca gcggcacgaa ataaaatgaa ccatcaatac accgataaca       360
     ctttgaatcc caatccagct tctcccacag cgtctcaagg tcacacacaa attaataaat       420
     gctaacaccc accaataaca atacacaacc gcaatgcaca tatgagtatc aacgcataca       480
     ccgcaacagc caatcagctg gcggcggaag gcacgggcag aagcgcaagt aaggcagggc       540
     agggtgaggg agagggagaa gaagcggacg aaaaaataaa tgggcgccaa tatttttaaa       600
     ttttttgacc gtttgttttg ctccaccgcc ataaatagtt cgtccatttc ttaaacagat       660
     ggcgctaacc ctgcgcaggc ctgcgcagga atcgctgaag tcccgcgcgg ggaacgggcc       720
     aaaatctgcg ctggccagcg cagaatttgg tacatttcct gcgcaggaaa ctgctcgaat       780
     ttgcgcagcg gggatctgtg atgtacatat tataatgtac acactctcat tccaaacgtc       840
     actgtgactg gtcgaagatt ctctgcgctc cgactatttt caatattatt ccgagaaaac       900
     ctgtatcttt gctgaacctg ttgctggtgt aggtgacttc attgcctggt tttgtttaac       960
     aactggatta ttcaccgtca atcacctgga aacgttttcc ggcccacaat cattacgtcg      1020
     cttcaacatc acaatcaatc gctcatccac aaagcaatgg ctggtatttg ttccgcctgc      1080
     gctaacgaca tcgtagctgc tgatcgcatt gtgaaatgcc agggttggtg caactctgag      1140
     tttcacttct catgcagcgg actttctgag gaactgtccg ctactataga gtcctgtgca      1200
     caactttttt gggcctgtaa agcctgtgta aagtttcaca aggatccgcg tacggccgtg      1260
     ttgaggtcat ccaccccgta cactcacact tctgtcgacc tactgtccag catagccgac      1320
     cttaaagcgg gcctccgtag cgagctgtca cagcatacca cagctattaa gttagagctt      1380
     ctggaagttt taaaggcgga gatccgttcc tgcttgcgat cgacgcatgc cgccaccgat      1440
     ttaccgtctc aacggcccat tcatcacaat tcagcgccta aattgtttaa ttcagtggtc      1500
     aaaaatatcc ctggtactat tacacccaca ctacaacagt atccatcatt agccgcttct      1560
     cttagtgtga gtgcgaacga accgtcatcc ttcaccaata tgccaccast ttacaacccg      1620
     caaacaccac tactcagagg atcgggatcg ccgctcgatt ctgacacact agacaccatc      1680
     ccacacactg atacgcgaat gtggctattc tttacgcgtt tctccccatc ggttaccact      1740
     gagcagattt ctctcatggt gcaagtacgt ctagcactcg ataagcggga tgtgtttgta      1800
     caccgtctga cgaagcttgg tgccgacact agtacactct catttatctc atttaaggtg      1860
     ggcataccag ccactctacg caacaaggct ctctcaccta agacatggcc ctctgctctt      1920
     acctaccgag agttccgtga ctatcggacc aataattata acactaatac ctgtgcaaca      1980
     actgaaacaa attcgatgct cgatcaaaac gttactctcg ctaccgacac ttatcataat      2040
     cctctctcac attctggagg gagtgccgcg atgccaacta ctacaacaga tacgctcgca      2100
     cagcccgtta cgatttcctc acctgccatg accactacag acacagcttt gtttacaaac      2160
     gaaccacatc ttgaccttaa tgagcgaatg cttgttacca ccacacctac caggtcacct      2220
     cccgaatgct tagccgctcc taaaaaacga ccgaagcgcg gaaacgctaa acggactgat      2280
     gaatctgctg acgctggccc gtcggatgaa tagcaatctt gcactgcatc cggcgatgca      2340
     cctcgctcag ctcatcccag tctctctatc tactaccaaa atgtacgtgg tctacgaacg      2400
     aaaactacaa atcttcgcct ggcgctatca gaatcagaat atgattttat cattctcacc      2460
     gagacttggc ttactcagtc cataccttct tcgctcctca ctgacgatca ttatcatatc      2520
     tacaggtgcg ataggaatct ttccaacagt gccctctcac gcggtggggg tgttttaatt      2580
     gcatgttcct cttcaatacc gacatgtgaa atcgcatcgc ctaataccat actggaacaa      2640
     ctttggatca aaacattgct gccaggtgtc tctgtttaca tcggcgttgt ttacattccg      2700
     cctagtcatg cgaatgaccc cgcagtgatg aacgctttac atgatagtgt acgtgaaatt      2760
     tcaagccgca ttaaagagag cgatttatta tacgtcttcg gagatttcaa taaacctgat      2820
     atcagatggg agctgactaa tacatcagaa gccaccgatt gctctccatg ttattctgtc      2880
     atgcattatg cacctttatg caattccgtg gctaataccg atttcgttga tgggttgcat      2940
     agtaccggat tatttcagtt gagtggtatt gcaaatcaat ctgggcgtca attggatctg      3000
     gtcttcgcaa accttgccgc aaccaatatt ttgtgcgact caatcacacc tctgcactct      3060
     gtgaatggta cttcggctct agagaactcc ctcccatacg taacacactg tagtattcca      3120
     cttctcagtg aggactttca tcatccttca ttggatatga tgatttatta tcccgtacaa      3180
     ctatcccaca ccaccaacag tcacactcgc agtacagtca atagaaattt cttcaaaacg      3240
     aatgtggaac gtatgaattc tcttattgtg tcgtttgacc gcaattttga ctgctccaac      3300
     tttgccacta tcgacgaagc caccgatttc tttagcgttt ttatgcgctc agcgattaat      3360
     tcctgcgttc ctgttgctca acgaaagtct ggccccgatt ggtctaatgc atctttaaga      3420
     cggttgaaaa aaataaaatc aaaagcctac gcggattaca gtagaacgag atcatcgctg      3480
     cataggagaa tttttttcga tgcactgaac aattatcgtc gacawaatcg tgtgctctac      3540
     cgctccttca ttcgccgtac tgaaaggcag ctgttttcta agccgacacg gttctggagc      3600
     ttctggaaca aacggcgcaa tataagaagt atccctccgt caatgagcta caatggcsaa      3660
     actagtatcg atacatccga tatttgcaac actttcgcca atcgtttcgc tgatgcattc      3720
     acccttcctg ttcacaatcc taacacacta gcagaggcca cycgcaatac tccatcggat      3780
     gctatcgatt ttattatacc cacaattgac gaagcattaa ttgcgcgcac actcaacgat      3840
     ataaaaccat ctacatcatc tggacctgac aatattcccg catacatttt gaagcactgc      3900
     cgtcaatcac tcgcacccat tcttgccaaa atatttaatg attcccttat gcgtggcacg      3960
     tatcctgcgt cctggaaaca cgcgcgaatg gttcctatcc ataaaaaagg cagtcgactt      4020
     catgctagta attatcgtgg cattgtttcc ctatgcgctt gtgcaaaggt gtttgagctc      4080
     attctataca atccgctact cacagcagtt caaaactata tgagccctag tcagcatgga      4140
     tttctcccaa ggagatcttc caccacaaat cttgctgaat ttgttggyta ctgcttcgac      4200
     aacatggatc gtggtactca agttgatgca gtatatatcg acttcagggc tgcgttcgat      4260
     agtatytctc atgatattct actctcgaag ctaaaaaaac tcggtttcct cgactggcac      4320
     atcacctggc tgcgttcata tttaactggt cgttcgtact acataagcat aggatctcat      4380
     cgttctcact ccttcaccag ctcctccggt gtgcctcaag ggagtaattt gggaccgcta      4440
     ctcttcctca tctatataaa tgatctatct ttcgttttac cgccaggcca acacctaatg      4500
     tacgccgacg atgtaaaaat attcgctcca gttagaaacg acagtgactg tgtacgcctt      4560
     caaacgatcc ttgagaatct ggatagctgg tgcagcagaa acgccctcca agtgtgtgct      4620
     gataaatgcc agtgtatatc attcagcaga gcccgtcacc ccatcacgtt tacatacact      4680
     atgctcaaca cggctttggc tcgcacgaca tgtatccgtg atctgggggt gctactcgat      4740
     cagaagatgt catttcgccc tcacattgat agcgttgttg cgaagggaaa tcagctactt      4800
     ggtttaatta cgcggacctg tagcgagttt accgatccca tgtgcgtcaa gtcgatcttc      4860
     tgtgccatcg taaggtcgtg cctggagtac tgctgtccga tctggtgccc gcttggcgtt      4920
     ggtgacatca atcgcctcga agccattcaa cggagactca ccaggtacgc ggttcgactc      4980
     cttccatggc aatcccacca cgctcggccc acctaccatc agcggtgtct gcttctcgga      5040
     cattgaacca ctctgctctc gacgtaaaat atgacgccca atgccttttc atattccggc      5100
     tccttaaach cggagagatc gattccccgg catcgaatac tagccagcat caatttgttc      5160
     gctccctgtc ggattcttag atccaatttc catctccgtg taccgcgtac ccgcaacaac      5220
     cattagccag ggacacccta ttatacgtat gtccctcgag ttcaatgaag tgttagattt      5280
     gttcgatttt agtatgtcta cttctacgtt caaggagaaa ttgcgtctac gtcacattta      5340
     atgtttgctt ataactagag gtctatttat atgctataaa tgatcattgt tatacatacc      5400
     ttaatttaat tataaggttg ccgattagac acgatggtcc gtcggtttat atatgaaata      5460
     aataaataaa taaataaata aataa                                            5485
//
ID   GYPSY7-LTR_AG repbase; DNA   ; ANG   ; 327 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   16-JUN-2003 (Rel. 8.05, Last updated, Version 1)
XX
DE   GYPSY7-LTR_AG is an LTR of the GYPSY7_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; 4-bp TSD;
KW   Gypsy clade; GYPSY7-I_AG; GYPSY7-LTR_AG; GYPSY7_AG; Gypsy group.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-327
RA   Kapitonov V.V., Jurka J.;
RT   "GYPSY7_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(5), 88-88 (2003).
XX
CC   [1] (Consensus)
XX
CC   GYPSY7-LTR is a long terminal repeat of GYPSY7_AG (it internal
CC   portion is deposited as GYPSY7-I_AG). The A. gambiae harbors
CC   ~30 copies of GYPSY7-LTR_AG.
XX
SQ   Sequence 327 BP; 101 A; 79 C; 78 G; 69 T; 0 other;
     agttagaccg acccgctaga aaccagactg caagctggca ttccacaccg gctacgagca        60
     gacgaagatg taacgctaca ccggccacga gcggacaacg gcgacatgcg caagtaatgc       120
     gacacgcaga ccgatcgtga gaacggacca atgcagccag caaccagcgg cctcgttaga       180
     acattagctc gttaggttta gtcagtcgaa gtcgaagtct agaatcagcc agatatagtt       240
     catagtttag ctttagtcag gagtaatcct gtttgtgtaa aataaaaatc tttttttatg       300
     gccaaccggc ctagataaag attaact                                           327
//
ID   GYPSY71-I_AG repbase; DNA   ; ANG   ; 4621 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY71-I_AG is an internal portion of retrotransposon GYPSY71_AG
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; AP protease; Gypsy clade; 4-bp TSD gag;
KW   RNase-H; MDG3 lineage; GYPSY71-I_AG; GYPSY71-LTR_AG;
KW   integrase GYPSY71_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4621
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY71_AG, a member of the MDG3 lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 181-181 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY71_AG is a family of gypsy-like LTR retrotransposons that,
CC   according to the aminoacid sequence of its reverse
CC   transcriptase, RNase and integrase is phylogenetically grouped
CC   with representatives of the MDG3 lineage of other organisms.
CC   GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY33_AG, GYPSY34_AG,
CC   GYPSY35_AG, GYPSY36_AG, GYPSY37_AG, GYPSY38_AG and GYPSY72_AG
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY71-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1361-aa
CC   GYPSY71_AGP gag-pol like poliprotein (pos. 489-4571). The
CC   sequence of the LTRs flanking GYPSY71-I_AG is deposited as
CC   GYPSY71-LTR_AG.
CC   GYPSY71_AGP:
CC   MATVKQLCEDFTKIGLVRECERLGLETTGGKVEIANRIVKYRATVASGDNAGPSGSGHRAEPAN
CC   AIDDVENYAGNQPYESCDDDSEEKADLDLPEEGDSFVAEDDDETEEDPFQTAVRISTPKRPQRV
CC   YAFRDVEDSIETFGAEDGHDVRIWLAHLDSVSKSAGWNDEQKLIMLRKKMTGIARKFVSSLRNV
CC   QTYAILKKELIAEFAPFVRSSDVHRILANRKKETAETMREYVYEMQRIAAQIDLDEPSLCEYIV
CC   NGVTDDDFFKSLLYEAQTIRVLKEKLLNFEKVRMARKKKTTDKEENKRVLSSSSRVDKRAEQRC
CC   YNCGNKGHQARACAQTQGGPKCFSCREYGHKASECARNKSVVPAKINVTEESVGMVDVVLNKTS
CC   VKALFDSGSNQNLVTIGCYKRIEGSPLIDTSMWFQGFGGMRTKAIGMFTVDVTVDDNVFSGVRF
CC   FVVPNESMSYDAVLGRDSLNYFEVTMTTAGVKVRPYGSTDEMFSIVCDNEDNLDVSPRFSERVK
CC   AVISGYKPAVNVNSRVETKIILHDETPVRSSPRRFAPGEKAVLEKTIDEWLAAGIIRESESDFA
CC   SPVTLARKKDGSLRVCVDYRELNRKMVKDCFPMRNIEDQIDRLKSARVFTTLDLKNSFFHVPVE
CC   KSSQRYTGFVTHTGQYEFLRTPFGLVNSPASFSRFVADVFREFIKSERVLVYVDDLIIPSLDEE
CC   SNFQTLKELLNVASENGVQFNWKKSQFLKDEVEYLGYVIRGGCYRIAPSKLRSVQLFPEPKNVK
CC   QLQRFLGLTSYFRKFIAGYATISKPLTSLLQKGVEFVFGEEERSSFDELKRCLVTDPVLKIYDE
CC   SAETELHTDASKYGYGAALMQKSDDDKFHPVAFMSQQTSNAEKNYSAYHLEVLAVVRAVEKFRV
CC   YLLGIKFKIVTDCAAFGHTLKSKELSARIARWALMLEEYEYEVVHRPGSSMKHVDALSRAPVMI
CC   VKSDPMIEAIRKMQQSDERAKAIIELLKTQSFEDFVMSDGLLMKVVKGREVIVVPSGMQSDLIR
CC   RIHEKGHLGARKIEGIIEQEFYIPNASEKIKQTIECCVKCILAERKRGKVDGLLYPIAKGDVPL
CC   DTYHVDHLGPMDITEKRYKYLFVVVDAFSKYTWIYPTKTTNSFEVIQRLTTQSEVFGNPRRIIS
CC   DKGAAFTSNDFKRYCEDQDIERVEITTGVPRGNGQVERVNQVIIAMLRKMSVNDPAKWYKHVAN
CC   IQRWINSSPHQSIGVTPFEAMFGVPMRHEGDLRLGELMEEIRVAQHHDQREQTRAGARVSIEKA
CC   QEEQRRSYDLRARSATTYREGDLVVIKRTQFGPGRKYAAEYLGPYKVTSVRPHDRYDVEKINGE
CC   GPKVTSTASSHMKPYRF.
XX
SQ   Sequence 4621 BP; 1325 A; 798 C; 1336 G; 1162 T; 0 other;
     tgggggctca accgggatac ttttttccca aacgagtgag gcttttgcga tgaaagcaat        60
     cggtgcgata atgtgtgatg tttcgtgagg ctattttgtg attaaatagc aaaaaactgt       120
     gaggcttttt ttataagcaa atagtgagac gttttgtgaa agagaagaac agtgaggctt       180
     atgtagcaac gcgtgcggat cagtgaggct ttcgtagcaa tccgtgcgaa tcagtgaggc       240
     ttgtgaagca attagtgagg ctttattttt agcaaccagt gagaatccgt gagtgatagc       300
     gaggcttttc gaagcacacc gagtgaagaa attaagcgag gcttcacagc aatctgtgtg       360
     tgaaaattct gtgtgaattt tacgggtcaa ctagtgtgac attttgtgcg tgagtgcggg       420
     aagtcgcgaa ttgcctggta gtgtgtgtcg gctttgtgag tgaaagtacc gcgagagaga       480
     gagatagaat ggcaacggtc aagcagcttt gtgaagattt cacgaagatt gggttggtgc       540
     gcgagtgtga gaggcttggc ctagaaacca ctggaggaaa agtggaaatc gcgaatcgaa       600
     ttgtgaaata ccgagcgacg gttgcgtcag gggacaacgc cggtccgtcc gggagtggac       660
     acagagcaga accagctaac gccatagacg acgtcgaaaa ctacgcgggt aaccaaccgt       720
     acgagagttg cgatgatgat tccgaggaaa aagcggatct ggatcttccg gaagaaggtg       780
     atagctttgt tgccgaggat gacgatgaaa cggaagaaga cccttttcaa actgctgtgc       840
     gaatctcgac gcctaaacga ccgcaacgcg tttacgcatt tcgagatgtg gaagatagca       900
     ttgagacgtt tggagcagag gatgggcacg atgtgcgtat ttggctggca cacctcgatt       960
     ccgtatcaaa gtcagcagga tggaatgacg aacaaaagct aatcatgtta cgtaaaaaga      1020
     tgacgggaat cgcaagaaag ttcgtgtcgt ctttgcgtaa tgtgcaaact tatgcgatat      1080
     tgaaaaaaga gctgatcgcg gaatttgctc catttgtgag gtcgagtgat gtgcatcgga      1140
     ttctcgcgaa tcggaagaag gaaacggccg agacgatgcg agagtacgtt tacgaaatgc      1200
     aacgaattgc tgcccaaatc gatttggacg aaccaagctt gtgtgagtac atcgttaacg      1260
     gtgtgaccga cgatgatttt ttcaaatcat tgctgtacga ggcgcaaaca attcgagtat      1320
     taaaagaaaa gttgctcaac tttgaaaaag tgcgcatggc tcgaaagaag aaaacgacgg      1380
     ataaagaaga aaacaaacga gttttgtcat ccagtagccg cgttgacaaa cgggcggagc      1440
     agcgatgcta caattgcgga aacaaaggac accaagctcg cgcgtgcgcg cagacacagg      1500
     gtggtccgaa atgtttctcg tgtcgtgagt acggtcataa ggcgagcgag tgtgcgcgga      1560
     acaaaagcgt cgttcctgcg aaaatcaacg tgacggaaga atcggtggga atggttgatg      1620
     tcgtgttgaa caaaacatcg gtcaaggcat tgtttgacag tggaagcaac caaaacttgg      1680
     tgacaatagg ttgttacaaa agaatcgagg gatcaccgct gatcgatact tcgatgtggt      1740
     tccagggctt tggtggcatg agaacaaagg cgatcggcat gttcacggtg gacgttacgg      1800
     tggatgataa cgtttttagt ggtgtgcgat tttttgtggt gccaaatgaa agcatgtctt      1860
     acgatgcagt attgggcaga gattccttga actattttga agttacgatg acaacggcgg      1920
     gtgtcaaagt caggccatat ggttcaacgg atgaaatgtt ttctattgtg tgtgacaatg      1980
     aagacaattt ggatgtgtct cctcgatttt cggaaagagt aaaggcggtt atttcggggt      2040
     acaaacctgc ggtaaacgtg aatagtcgtg ttgagacgaa aattattttg catgacgaga      2100
     cgcctgtgcg ttcgtcgcca aggcgttttg ctccgggtga aaaggcggtg ctggagaaaa      2160
     caatcgacga gtggttagcc gcgggaataa ttcgagaaag tgagagtgat tttgcgagtc      2220
     cggtaacgtt agcgagaaaa aaggacggtt ccttacgcgt ttgtgttgat tatcgcgaac      2280
     ttaatcgaaa aatggttaag gattgttttc ccatgaggaa catagaagat caaatcgatc      2340
     gcttgaagtc agccagagtt tttaccacac ttgacttgaa aaattcgttt tttcatgttc      2400
     ctgtggaaaa gtcgagccag cggtacacag gctttgttac ccacacaggc cagtacgagt      2460
     ttcttagaac gcctttcggg ttggtcaata gtccagcgag tttcagccgg tttgtagcgg      2520
     atgtgtttcg ggaatttatc aagagtgagc gtgtgttggt gtatgtggat gatttaataa      2580
     ttccttcatt agatgaggaa agtaattttc aaacgttgaa ggaattgtta aatgtcgcga      2640
     gtgagaacgg tgtgcagttc aattggaaaa aatcgcaatt tttaaaggat gaagtggagt      2700
     atctcgggta tgtgattcgc ggcgggtgtt atcgcatagc gccgagtaag ttgcgatcgg      2760
     ttcagctttt tccggaaccg aaaaatgtga agcagctgca aagatttttg ggacttacga      2820
     gttacttccg aaaatttatt gctggttacg cgacaatttc gaagcctttg acaagtttgc      2880
     ttcagaaagg tgttgagttt gtgtttggtg aagaggagcg ttcgagtttt gatgagttga      2940
     aacggtgttt ggtgaccgat ccggtgttaa agatctacga cgaaagtgcc gaaaccgagc      3000
     ttcatacgga cgcgtcaaag tacggttatg gtgctgcgct tatgcagaag agcgacgacg      3060
     acaagtttca tcctgttgcc ttcatgagtc aacaaacatc aaacgcggag aagaattata      3120
     gtgcgtatca tttggaagtg ctagcggtgg ttcgcgctgt tgagaagttt cgtgtgtatc      3180
     tcttaggcat caagtttaag atcgttacag attgtgcagc gtttgggcat actttaaaat      3240
     cgaaagaact gtcggctaga atcgcgagat gggctttgat gctcgaagag tatgaatatg      3300
     aagtggtgca taggccaggt tcatcgatga agcatgtgga tgcgttgagc agggcaccgg      3360
     tgatgattgt gaaaagcgac cctatgatag aagcgatcag aaaaatgcaa caaagtgacg      3420
     agcgtgcgaa ggcaattatt gaattgttga aaacacaatc ttttgaagat tttgtcatga      3480
     gtgatgggct gctgatgaaa gtagtgaaag gtagggaagt gattgtggta ccatcgggaa      3540
     tgcaaagcga tttgatacgt aggatacacg aaaagggtca cttaggagct cgtaagatag      3600
     agggtattat cgaacaggag ttttacattc caaacgcgag tgagaaaata aaacaaacga      3660
     ttgagtgttg tgtgaaatgt atcctcgcag agcgtaaaag gggaaaagtt gacggtttat      3720
     tatacccaat cgcgaaaggt gacgttccgt tagacacgta tcacgtagac catttgggtc      3780
     caatggacat tacagagaaa aggtataaat atttgtttgt agtagttgat gcgtttagta      3840
     agtacacttg gatatatcct actaaaacga cgaattcatt tgaagtaatt cagcgattaa      3900
     cgacacagag cgaggtattt ggtaatccaa ggcgtattat aagcgataaa ggggctgcgt      3960
     ttacgtcaaa cgattttaag cggtattgtg aggatcagga tatcgagcgt gtggaaatta      4020
     cgacaggtgt tccgcgcggg aacgggcagg tagagagggt aaatcaagtg attattgcta      4080
     tgttgcgaaa gatgagtgta aacgatcccg caaagtggta taagcacgtt gccaatattc      4140
     agcggtggat taattctagc ccacatcaga gcatcggtgt tacccctttt gaagcgatgt      4200
     ttggggtacc gatgagacac gaaggagatt tacgactagg tgagctgatg gaagaaattc      4260
     gagtggccca gcatcacgat caacgagagc agactcgagc tggtgccagg gtttctatcg      4320
     agaaagccca agaagaacaa cggagatcgt acgacttacg agcgcggtcg gctacaactt      4380
     accgcgaagg cgacctggtg gtgattaagc ggacgcagtt cgggcctgga aggaagtacg      4440
     cggctgagta ccttggacca tataaggtaa ccagtgttcg tcctcatgat cgctatgacg      4500
     tggaaaagat caatggcgaa gggccaaaag tgacgtcgac ggcttcgtca catatgaaac      4560
     cctatcggtt ttaatgcggt gaggatcctt cggggcgaaa ggatcggtcg aggaaaggcc      4620
     g                                                                      4621
//
ID   GYPSY4-I_AG repbase; DNA   ; ANG   ; 4427 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY4-I_AG is an internal portion of the GYPSY4_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; gag;
KW   reverse transcriptase; integrase; 4-bp TSD; Gyspy clade;
KW   AP protease; GYPSY4-I_AG; GYPSY4-LTR_AG; GYPSY4_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4427
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "GYPSY4_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 77-77 (2003).
XX
CC   [1] (Consensus)
XX
CC   GYPSY4_AG is a family of autonomous gypsy-like LTR
CC   retrotransposons.
CC   GYPSY4-I_AG, an internal portion of GYPSY4_AG, is flanked by
CC   GYPSY4-LTR_AG LTRs. The GYPSY4-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 5 copies; they are
CC   less than 2% divergent from the consensus sequence. The A.
CC   gambiae
CC   genome contains about 10 copies of GYPSY4_AG.
CC   The consensus sequence encodes the 1423-aa GYPSY4_AGp protein
CC   (pos. 119-4387), composed of gag (zinc-finger, 264-379), protease
CC   (417-502), reverse transcriptase (pos. 628-797) and integrase
CC   (pos. 1145-1290) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           59..4387
FT                 /product="GYPSY4_AGp"
FT                 /translation="PACIRVYLCTCVYDTTPFSIMLRKKELRRALIVDVPD
FT                 TATVTQLRQLYASHEPVARSPRAAPPTTSATTPAPACANHQDAAILCLPHY
FT                 NGDDDFAHHENVANAAASTNNTTDAVSALPSAHGVAAALPRGPDDIEAQFE
FT                 KLRQQQQLAELRQKVHQLETQQPAALCVKDFEAFIEPLDADKNPNVIRWFR
FT                 DLERLFALYRVRDADKFFFTLRLLTGTAANVAKELVVTTYDELKKELIDNL
FT                 HVVATPESVYRQLRNRRLRPQESALHYLFDMQRIAGQASIADSELIPIVID
FT                 GLGSPSITSSLHFMPLTMDDFRKKLKLFESCRHLCTTQPPSADARATTNSR
FT                 MERPRPSQEPIRCFNCSRFGHLQNACPRPKRPPGGCFRCFQTGHVYRNCPE
FT                 RRANATVEGNTSSDEALATNQEVSLTFFHPSAKRTTLPCVRSLLDTGSPVS
FT                 FISDTIVPVKMLGPLSATEYCTMIKGPLYSRGKIDCTIRFKNHSVRHSFII
FT                 LPGIAWPVIIGRDLLNSLNIFLTYSSLTTSCITKPLSTELKEVDTILPEKL
FT                 DDAIRSICALDVAEADNELDLGKTLSLEQRSIVNSIVENSYLNYTSDVIPL
FT                 KHPMKINLTHDTPIFTKPRRLSYGERQQVKQIVDKLLAENIIRPSNSPYAS
FT                 ALVLVRKKSGEVRMCVDYRPLNKITVRDNYPLPLIETCLEHLCGKKFFSLL
FT                 DLKSGFHQVPMSEESIPYTSFVTPDGQFEYLKMPFGLRNAPSEFQRFINSI
FT                 LREFIDDGRIVVYLDDIIIASTDLSSHFSTLRSVLEKIKQNNLELRLDKCK
FT                 FVHEEIEYLGYKANFSGIQPSDRHIKALTNYPMPTNLKQLRRCLGLFSYFR
FT                 RFVPSFSCIAKPMTNFFRRTKYLTSIQIACMLLKPYVTNLCILLSFPYSTQ
FT                 NGKPNYTVTQVPLVLALFSFRNRMTISCTLLLTFPKPLQKTSPSYTVMSLK
FT                 LFPSFTLLSASTLMFMGSPLVTDCNSLVETLKNRNASAKIARWSLFLENYD
FT                 YTICHRSGTSMPHVDALSRTEAVGAIGEIDLDFQLQVAQTRDPSIEALKHR
FT                 LESEEVDGFLLQDGLVYRDIPDGQPQLYVPSEMVDNVIRHTHERIGHLGIN
FT                 KTFSKISQHYWFPHMKPTIDKFIKNCLKCIVYSAPHHTNARNMYSIPKEPL
FT                 PFDTIHIDHLGPLPSSSLRKKYILVVIDAFTKLTKLYPTSSTNAKEVCSAL
FT                 SQYMSYYSRPRRIVSDRATCFTSTLFEDFLESHNISHVLNATGSPQANGQV
FT                 ERVNRVLRPILSKLSDAPDQTDWVSKLRSAEYALNNTVHTSTNFCPSVLLF
FT                 GVEQRGKVPDELAEYLDEKFDRASRDLEAIRAKALENIEESQRKNEEYFSK
FT                 KHKPPQCYKEGDLVAIRYSDTTDSGNKKLNPKFRGPYVIHKVLPHDRYVVR
FT                 DVEGCQLTQLPYDGVLEANKLRRWTESSD"
XX
SQ   Sequence 4427 BP; 1170 A; 1185 C; 898 G; 1174 T; 0 other;
     tctcagaagt gggattacca acaaaaatcg cctacaaaac cgcctgcaag ccgcctaacc        60
     agcctgtatc cgtgtgtacc tgtgtacgtg tgtgtatgac acaacgccat tttccatcat       120
     gctgaggaaa aaagaacttc gtcgggcgct tatcgtcgac gtgccggata ccgctaccgt       180
     cacacaactc cgacagcttt atgcctccca cgagccggtc gctcgttccc cccgtgcggc       240
     gccgcccacc acctcagcga cgacaccggc tcccgcttgt gcaaaccacc aagatgccgc       300
     cattttgtgc cttccacatt acaatggcga cgacgatttt gcgcatcacg aaaatgttgc       360
     gaacgctgcc gcttcgacga acaataccac tgatgccgtt tccgcccttc cttctgccca       420
     tggtgtggcc gccgcccttc cccgcggccc tgacgacatc gaggcccaat ttgagaagct       480
     gcgacagcag cagcagctag ctgaattacg ccaaaaggtg caccaacttg aaacgcagca       540
     gccagccgcc ctttgcgtaa aggactttga agctttcatc gagccactcg acgccgataa       600
     gaaccccaat gtcatccgat ggttccgcga cttggagcgt ctctttgcac tttaccgagt       660
     gcgcgatgca gataaatttt tcttcaccct tcggctcctc accggcacag ccgctaacgt       720
     cgcaaaagaa cttgttgtca ccacttatga tgagttgaag aaagagttga tcgacaatct       780
     tcacgtcgtt gctacgcccg aatctgttta tcgccaactc cgtaaccgtc gattgcggcc       840
     ccaggaatcc gccctgcatt acttgtttga catgcagcgc atcgcaggcc aagccagtat       900
     cgccgattca gaactgatcc cgatcgtcat cgacggcttg ggaagcccgt caattacgtc       960
     gagtctgcat ttcatgcctc ttacgatgga cgacttccgg aagaaattga aacttttcga      1020
     atcttgccgt catctttgca ccacccagcc cccttccgct gatgcccggg ccacaacgaa      1080
     cagccgtatg gaacggcccc gcccatcgca ggaacccatc cgctgcttca actgctcccg      1140
     attcggacac cttcagaacg cgtgcccgcg gccgaagcgc ccacccggcg gatgttttcg      1200
     ttgtttccag actggacacg tctaccgtaa ctgccctgaa cgtcgggcca acgccactgt      1260
     cgagggcaat actagttcgg acgaagctct cgccacaaat caagaggtga gtttgacatt      1320
     tttccaccct tctgctaagc gtaccaccct tccctgcgtt cgttcccttc tcgacacagg      1380
     aagtcctgtg agcttcatta gcgacacgat agtaccagtt aagatgctag gacctctttc      1440
     cgctaccgaa tactgcacta tgattaaggg accactttac tctcgaggaa aaatcgattg      1500
     tactatccga tttaagaatc attccgttcg acactctttt attatattac ctggaattgc      1560
     gtggccagtc attatcggtc gcgatttact gaactcactt aatatttttc ttacgtattc      1620
     atctcttaca acttcatgta ttactaaacc tctatcgacg gaacttaaag aagtagatac      1680
     gattcttcca gaaaaattag acgatgctat taggagtatt tgtgcgctcg atgtggctga      1740
     agccgataat gaactggatt taggaaaaac actatctttg gaacaacgtt caatagtcaa      1800
     ttctattgtt gaaaattcat acctcaacta tacttcagat gttataccgc tcaaacaccc      1860
     tatgaaaatc aatctgactc atgatacacc aatatttact aagccgcgaa gactctctta      1920
     tggtgaaaga cagcaggtta agcaaattgt tgataaactg ttagcagaaa acatcatccg      1980
     gcccagtaat tctccttatg cttctgcgct tgtcctcgtt aggaaaaaga gtggcgaggt      2040
     tcgtatgtgt gtggattacc ggcccctcaa caaaattaca gttcgggaca attaccccct      2100
     accccttatc gaaacttgtt tggagcatct gtgtggaaaa aaattcttca gtttgctgga      2160
     tttgaaaagc ggattccatc aagtcccaat gagtgaggag tctatcccct acacttcttt      2220
     tgtgacccca gatggtcaat ttgaatatct gaaaatgcca ttcggtcttc gtaacgcccc      2280
     ttccgaattc caacgtttta ttaattctat cttaagggaa ttcattgatg atggcagaat      2340
     agtagtgtac ctcgatgaca tcatcatcgc ttctaccgat cttagctctc acttcagtac      2400
     ccttcggtcc gtattagaaa agattaagca gaataattta gaacttcgtc ttgacaagtg      2460
     caaatttgtc catgaagaaa tagaatactt gggctacaaa gctaactttt ctggaattca      2520
     gcctagtgat aggcacatta aagcacttac taattaccct atgcccacta atttaaagca      2580
     actcagacgt tgtcttggtc tgttttcata cttccgacgg tttgttccat ctttctcttg      2640
     catcgctaaa cctatgacaa acttcttcag aaggacgaag tatttaactt cgattcaaat      2700
     tgcgtgcatg cttttgaaac cttacgtgac aaacttgtgc attctcctat cctttccata      2760
     ttcgacccaa aacgggaaac cgaattacac tgtgacgcaa gttcctttgg ttttggcgct      2820
     attctccttc agaaacagga tgacaataag ttgcaccctg ttgcttactt ttccaaaacc      2880
     acttcaaaag acgagtccaa gttacacagt tatgagcttg aaactctttc catcatttac      2940
     gctcttaagc gcttccacac ttatgttcat gggctcccca ttagttactg actgcaactc      3000
     tctggtcgag acccttaaga accgtaatgc ttccgctaag attgccaggt ggtccttgtt      3060
     tctggaaaat tacgactata ccatctgtca tcgctcaggc acttctatgc cccatgtcga      3120
     cgcactgagt cgcaccgaag ctgtgggtgc catcggtgag attgaccttg acttccagct      3180
     tcaagtagct cagacgcgtg acccatctat cgaagctctc aaacatcggt tagaatcaga      3240
     agaagttgac ggattcttac ttcaagatgg gcttgtctat cgcgacatac ctgatggtca      3300
     acctcaattg tatgtccctt cggaaatggt cgacaacgta attagacaca ctcacgagcg      3360
     aattggccac ctgggcataa acaaaacctt cagcaaaatc agtcagcatt actggttccc      3420
     ccacatgaag cccactatcg acaaattcat taagaactgc ctcaagtgca ttgtttattc      3480
     tgcacctcat catactaatg cccggaatat gtacagcatc cctaaagagc ccttaccctt      3540
     tgataccatc catattgacc atttaggtcc gctccctagt tcttccttac gcaagaagta      3600
     tatacttgtt gttatcgatg ctttcactaa attaaccaaa ctttacccaa cctcctcaac      3660
     taatgcgaag gaagtgtgtt ctgccctttc ccaatatatg tcttactata gccgccctag      3720
     gcggattgtt agcgatcgag ctacttgttt cacctcaacc ttgtttgagg acttcttgga      3780
     atcgcataac attagccatg tcctcaacgc caccggatcc ccacaagcca atggacaggt      3840
     agaacgggtg aaccgtgtgt tgcgtcctat ccttagcaaa ctatctgatg ctccagacca      3900
     gaccgattgg gtatccaagt tgcggtcagc cgaatacgct ttaaacaata ccgtccacac      3960
     atctacgaac ttctgcccct ctgtcctact ctttggtgtc gagcaacgcg gtaaagttcc      4020
     agacgagtta gccgaatacc tggatgagaa atttgatcga gcctctaggg acttagaagc      4080
     cattcgggct aaagcgttag aaaacataga agagtctcaa cggaagaatg aggaatactt      4140
     tagcaaaaag cacaaaccac cacagtgcta taaggaaggt gacttagtgg ctatacgtta      4200
     ctctgatacg accgatagcg gtaataagaa gctcaatcct aaattcaggg gaccttacgt      4260
     catccataaa gtgttgcccc atgataggta cgtggtacgc gatgtagaag gatgtcaact      4320
     cacacaacta ccctacgatg gggttctaga agcgaataag ttgcgacgtt ggaccgagtc      4380
     cagtgattag gaaattgagg gcaatttatt gttcaggata gccgagc                    4427
//
ID   IKIRARA1    repbase; DNA   ; ANG   ; 610 BP.
XX
AC   U55049;
XX
DT   15-SEP-1998 (Rel. 3.08, Created)
DT   15-SEP-1998 (Rel. 3.08, Last updated, Version 1)
XX
DE   Anopheles gambiae transposon Ikirara1.
XX
KW   IKIRARA1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-610
RA   Romans A.P., Bhattacharyya K.R., Colavita C.A.;
RT   "Ikirara, a novel transposon family from the malaria vector
RT   mosquito, Anopheles gambiae.";
RL   Insect Mol. Biol (1998)In press.
XX
RN   [2]
RP   1-610
RA   Romans A.P.;
RT   "IKIRARA1.";
RL   Direct Submission to Repbase Update (15-APR-1996)Zoology,
RL   University of Toronto, 25 Harbord Street, Toronto, Ontario M5S
RL   3G5, Canada.
XX
DR   GenBank; U55049; Positions       1     610.
XX
SQ   Sequence 610 BP; 181 A; 122 C; 123 G; 184 T; 0 other;
     cagggtttca cactttatct caagaccgcg ggaccccttc ccgaatctgt cttagccaaa        60
     gccaagactg cggtatgatg cttgaaaacg ttgatgatac ctgaattcat cggatgcaat       120
     gctgaatctg cggcacattt ctcgaaacac actggtccgc gccgaggaca tgcggtcgaa       180
     tattttttta cacggataac ctttgtgtac atcagtgtac tgaaaacagt taattatttt       240
     ttcgtgtttt taccagaaaa gattatttaa acagttcaaa ctaatttcta aacacttgta       300
     aatattttaa ttaaacaaat atgcattcac tcattttatt aaattgtctt tttttggtaa       360
     aaaaacgaaa aggataattg agtgtttcta atagactgat gtacacaaag gttatccgtg       420
     taaaaaaata ttcgaccgca tgtcctcggc gcggaccagt gtgtttcgag aaatgtgccg       480
     cagattcagc attgcatccg atgaattcag gtatcatcaa cgttttcaag catcataccg       540
     cagtcttggc tttggctaag acagattcgg gaaggggtcc cgcggtcttg agataaagtg       600
     tgaaaccctg                                                              610
//
ID   TRANSIBN1_AG repbase; DNA   ; ANG   ; 978 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   13-JUN-2005 (Rel. 8.04, Last updated, Version 2)
XX
DE   TRANSIBN1_AG is a TRANSIB-like DNA transposon - a consensus
DE   sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat;
KW   nonautonomous DNA transposon; 5-bp TSD; TRANSIB superfamily;
KW   TRANSIBN1_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-978
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIBN1_AG: a family of target site-specific nonautonomous
RT   TRANSIB DNA transposons from African malaria mosquito.";
RL   Repbase Reports 3(4), 83-83 (2003).
XX
CC   [1] (Consensus)
XX
CC   TRANSIBN1_AG is a family of nonautonomous DNA transposons that
CC   belongs
CC   to the TRANSIB superfamily originally identified in Drosophila
CC   (see
CC   description of TRANSIBN1-TRANSIB4 in drorep.ref).
CC   TRANSIBN1_AG is characterized by a remarkable target site
CC   specificity.
CC   Its copies are inserted into the CCagtGG target site, and CagtG
CC   is
CC   a 5-bp target site duplication. There are ~100 copies of
CC   TRANSIBN1_AG
CC   in the genome/.
CC   The TRANSIBN1_AG consensus sequence was reconstructed based on
CC   multiple alignment of 30 copies. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   TRANSIBN1_AG occurred recently (in the last 1 Myr).
CC   TRANSIBN1_AG has 17-bp terminal inverted repeats (2 mismatches).
XX
SQ   Sequence 978 BP; 332 A; 167 C; 163 G; 314 T; 2 other;
     cacagtgggc aaccgccata caaacgccgg gatgaaaatc aattcctcgt gctattgcar        60
     tttwtcttca ttcaatacaa ttgctcttac tatacagggt agtcctatac taaaatcgtc       120
     aagacagcga ataaaactta ataattatcg ctcacaacat tgcattattg cgtatcagtt       180
     aacagcatca ataataattg ttaggaatta aaacgaaggc ggaataagtt tctgactgaa       240
     aacgaatttt taaagtatta cgcactaaaa aagttgtgtt tttcatggtt tgtttggaaa       300
     agagccgatt cctatcttac gacctttttt aaactgtttt tcctctcttc agctttgttt       360
     tctgcctgtt tgtttcaaat gcccgtttat gacaggtagt tggatactgg tggtgtatgg       420
     ctcatacaac aacacgtcaa aatcgctcgc gctattttca agaaaaagtt taataatttt       480
     cggggtcgca gatggtcgca gctaatttta acgacaatgc gtaggaaaat tgttgatctt       540
     tccaatgata tacgactcac gagtgaaatc gagtcgaatc ataaaaaaaa tcactctcca       600
     aaataaaaat atccaaaaat tcagcagtga tgtttggttt tcaatcattt atgaacttta       660
     aaaacaagtt tttgcaaaat attaagacat aacatcaaag tatgacaaaa aacctttcca       720
     acgacacatt gattatcaaa atctaaccat catatactaa aatatgatgg tttatgttcg       780
     gtcgaaaaat agctcaaagt tgggacaaaa aacccaaagt ttacactttg atggcctata       840
     tctcagtaag tttaagataa aaacgtgaaa tattttggtt tcaactaagt ttaagtatct       900
     attttaagaa aatgattatg gtgtaaacct gcgatgaagt tggtttttcg atttttatac       960
     aggcgtttgc ccaatgtg                                                     978
//
ID   GYPSY64-I_AG repbase; DNA   ; ANG   ; 4359 BP.
XX
AC   .
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   GYPSY64-I_AG is an internal portion of retrotransposon GYPSY64_AG
DE   - a consensus sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; reverse transcriptase;
KW   AP protease; Gypsy clade; RNase-H; 5-bp TSD gag; mag lineage;
KW   GYPSY64-I_AG; GYPSY64-LTR_AG; integrase GYPSY64_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4359
RA   Tubio M.J., Costas C.J., Naveira F.H.;
RT   "GYPSY64_AG, a member of the mag lineage of the Ty3/gypsy group
RT   of LTR retrotransposons in Anopheles gambiae.";
RL   Repbase Reports 4(6), 167-167 (2004).
XX
CC   [1] (Consensus)
XX
CC   GYPSY64_AG is a family of gypsy-like LTR retrotransposons that,
CC   according to the aminoacid sequence of its reverse
CC   transcriptase, RNase and integrase domains is phylogenetically
CC   grouped with representatives of the mag lineage of other
CC   organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG,
CC   GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG,
CC   GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG,
CC   GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG,
CC   GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG,
CC   are other members of this same lineage in Anopheles gambiae.
CC   The GYPSY64-I_AG consensus was reconstructed after multiple
CC   alignment of 4 copies. The consensus encodes the 1424-aa
CC   GYPSY64_AGP gag-pol like poliprotein (pos. 74-4345). The
CC   sequence of the LTRs flanking GYPSY64-I is deposited as
CC   GYPSY64-LTR_AG.
CC   GYPSY64_AGP:
CC   MEGAQEKDSAAGGGESSKNVSEAILKILANQQSLMSSMAQQLQLTNQSIQKFTHVEVVLDSLSS
CC   NMSEFVYDKENGYTFDAWYSRYSELFDRDACNLDNAGKVRLLLRKLSPQDHERYNSFILPKLAR
CC   EFTFEQTVKKLKSLFGATISTFRRRYNCLQMTKDDVDDYLSYSCKVNKSCVDFKLSELTEEQFK
CC   CLIYVCGLKSSSDAEIRMRLINKLNEAQDITLQQIVEQCNSLVNLKQDTVLVEQPSSVQYVANK
CC   GSSQQQRHPSGGNKQQDHPRTPCWSCGAMHFHKDCPSRNHKCKDCGKIGHSEGYCACFTSMATT
CC   SAPAQKAPWKKQYKRKQHQGQTSKIVTVNHVTQRRKFVSVHLNNIPHRLQIDTGSDITIISHQA
CC   WKRIGSPAVKPATCNARTASGDPLQLAAELECSITINNVTKQGKCFVTDPNVNLNVLGIDMMDL
CC   FGLWNEPITAFCNQICTTKTTNIAELRSRYPDVFNDKMGLYNKTAVQLTLKGTPTPVFRAKRPV
CC   AYMMEAVVEDELHRLESLGIIKKVDFSDWAAPIVVVRKPNGTVRICADFSTGLNNVLESNNYPL
CC   PLPEDIFVKMANCVIFSHIDLSDAYLQVPVDEASQPFLTINTHKGLFQFTRLSPGIKSAPGAFQ
CC   KLMDTMLAGLNSTTGYLDDILVGGRNEDEHQQNLHLVLNRLRDYGFTVRIEKCNFNMRQVKYLG
CC   QILDAQGIRPDPDKIAPIVSMPPPHDIPTLRSYLGAINYYGKYVQEMRTLRQPMDQLLKAGMKF
CC   HWSTACQRSFDRFREILQSPLLLTHYNPKMEIIVSADASNVGLGARIAHKFPDGSIKAIYHVSR
CC   SLTSAESNYSQIEKEALALIFAVTRFHRMIYGRRFILETDHKPLLAIFGAKKGIPTYTANRLQR
CC   WALTLLLYDFSINYISTDSFGHADVLSRLINRHVRPDEEMVIANLTFEKSIRSILNESLQAVPL
CC   SFKTIQNTTKNDDTLQQIIKFIKEGWPPKTIINDPKILQFYQRRDGLSVVADCIMYGERLVVPP
CC   SSRESVLKQLHKGHPGIERMRSIARQYVYWPNVDEDVAHIVKSCIECSSVAKTDRKTTLESWPV
CC   PEKAWQRLHLDYAGPVNGYYYLILVDAYSKWPEVMRTKDITTTATLRMLRNIFARHGQPETLVT
CC   DNGTQFTSNMFETFCEHYSIVHLKTAPFHPQSNGLAERFVDTFKRALKKITAGGETLEEAIDTF
CC   LLCYRSTPCRSSPEGKSPAEHIYKRPIRTALELLRPPSSSHKVHDNKQEKQFNLKHGAKKRHYS
CC   PQDLVWAKVYHNNKWSWAHGQVIEQIGSVLYNVWLSSTRKLIRSHCNQLRSRHEAEVSQQEQLA
CC   TTDVQIPLAILLDNCGLNDEVERETTTSTTLPSEMLADLAPPRQRSRVGSTRNNNQPPVPTRQS
CC   SRQRVPPTRYDAYHLY.
XX
SQ   Sequence 4359 BP; 1371 A; 1013 C; 942 G; 1033 T; 0 other;
     gtggcgacga ggcggtagaa gtttgcaaaa aaaccagcga aaattttccc gggaccgtgt        60
     gttatcatcg acaatggaag gtgctcaaga aaaagattct gcagcaggcg gaggagagtc       120
     atcaaagaat gtgtcggaag cgatactgaa aattctcgcc aaccagcaga gcctcatgtc       180
     ttctatggca caacagcttc aattgacgaa tcaatccata caaaagttca cacatgtgga       240
     ggttgtactt gactcattat caagtaatat gtcagagttt gtctacgaca aagaaaacgg       300
     atacactttc gacgcctggt attcccgtta cagcgaactt ttcgatcggg atgcttgcaa       360
     ccttgacaac gcgggaaaag tgaggttact tttacgcaaa ctgagcccac aagatcacga       420
     gcggtacaat agtttcatat tgccaaaact agctcgcgaa ttcacattcg aacaaacagt       480
     gaaaaagcta aaatccctgt ttggcgctac catctctacg tttcgacgca gatacaattg       540
     tcttcaaatg acaaaagatg acgtagatga ttatctttca tattcctgta aagtgaacaa       600
     atcctgtgtt gattttaaac tttccgagtt aactgaggaa cagtttaaat gcttgatcta       660
     cgtatgtgga cttaagtcaa gcagcgatgc agagattcgt atgaggctga tcaacaaact       720
     gaacgaagca caggacatca cgctccaaca aatcgtcgaa cagtgcaaca gtctcgttaa       780
     cctcaaacag gacactgtgc ttgtagagca accatcgtca gtgcagtacg ttgctaacaa       840
     aggttcatca cagcaacaac gtcatcccag cggaggaaac aaacagcagg atcatcctcg       900
     tactccttgc tggtcttgcg gtgcaatgca cttccacaaa gattgtccga gtcgaaacca       960
     caaatgcaaa gattgtggta aaattggaca ttccgaggga tactgcgcct gtttcacatc      1020
     aatggcgacc accagtgctc cagcgcagaa ggcaccgtgg aagaagcagt acaagcggaa      1080
     gcaacatcag ggacagacat cgaaaatagt gacagtcaac catgtcacgc aaagaaggaa      1140
     gttcgtctcc gttcatctca acaacattcc tcatcgactg caaattgaca cgggatcgga      1200
     catcaccatc atctcacatc aggcatggaa gcgtatcggt tctccggcag tcaaaccagc      1260
     cacttgcaat gctaggacag cgtcgggcga tccgttgcaa ttagcggcgg agctggagtg      1320
     cagcatcacc atcaataacg ttacgaaaca gggtaagtgt tttgtaactg atccgaatgt      1380
     caatcttaac gttttaggga ttgatatgat ggaccttttt ggactgtgga acgagccaat      1440
     cacagcgttc tgcaaccaga tctgcaccac gaagacgaca aacatagcag aactacggtc      1500
     tcgttatcca gacgtcttca acgacaaaat ggggttgtac aacaagacag cagtacaact      1560
     tacgttgaag ggcacgccta caccagtatt tcgtgcaaag agacccgttg cgtacatgat      1620
     ggaagctgtt gttgaagatg agctgcatcg tctggaaagt cttggcatca tcaaaaaagt      1680
     ggacttttct gactgggcgg cacccatcgt cgtggtacga aaaccgaacg gcaccgttcg      1740
     tatttgtgcg gatttctcga cggggttgaa caacgtgctg gagtcgaata attatccttt      1800
     accactgcca gaggatatct tcgtgaaaat ggctaactgc gtcattttca gccatattga      1860
     tttgtcggac gcctacctac aagtacccgt agacgaagca agccaaccat tcctaaccat      1920
     caacacccac aagggactgt ttcaattcac acgattgtca cccggcatca aatcagcgcc      1980
     aggggcattt caaaagttga tggatacgat gctcgctggg ctcaatagca ccacagggta      2040
     cctggacgac atattagtag gtggacgaaa cgaagatgag catcagcaaa acttacatct      2100
     cgtgctaaac cgtttgcgag attacggatt taccgtacgc attgaaaaat gtaatttcaa      2160
     tatgcgccaa gtcaaatatc tgggacaaat ccttgatgca caaggaatcc ggccagatcc      2220
     agataaaata gcaccaattg tgagcatgcc accgccgcac gacattccaa cgctgcgatc      2280
     ataccttgga gccataaatt attatggcaa atatgtccaa gaaatgcgca cactccgtca      2340
     gcccatggat caacttttga aggcaggtat gaaatttcat tggtccacag catgccaaag      2400
     atcattcgat cgttttcgag aaattttaca atctccatta ctgctaacgc attacaatcc      2460
     aaaaatggag ataatagtat ctgcagacgc ttcaaacgta ggattgggtg ctcgcattgc      2520
     tcacaagttt cctgatggat caataaaagc catttaccat gtgtcgcgta gcttaacatc      2580
     agctgaaagt aactatagcc aaattgaaaa agaggcgctg gctttgatat ttgcggttac      2640
     acgctttcac agaatgattt atgggcgtcg attcattctg gaaacagatc acaaaccttt      2700
     attggctatt tttggtgcaa agaagggtat accaacgtat acagcaaatc gtttacaacg      2760
     atgggcatta actcttctgc tctacgattt ttcgattaac tatatctcta cagatagttt      2820
     tggtcacgcc gacgtattat cacgtcttat caatcgacat gtgcggccag atgaagagat      2880
     ggtcatagct aatctcactt tcgaaaaaag tattcggagc atcttgaacg aatcactgca      2940
     agcagtccca ttgtcgttca agacaattca aaatacaacc aaaaatgatg ataccttaca      3000
     acaaatcatc aagttcatta aggaaggttg gccacctaaa accatcataa acgatcctaa      3060
     aatcctacaa ttttatcaac gacgagatgg actgtctgtc gtagcagatt gtattatgta      3120
     tggagagaga ttggtcgtgc ctcccagttc cagggaaagt gtcctcaagc agctacacaa      3180
     gggacaccct ggtatcgaac gcatgcgctc gatcgcacgg cagtatgtgt actggccaaa      3240
     cgtcgatgaa gacgttgcac atatcgtaaa atcgtgtatc gaatgttcta gtgttgcgaa      3300
     aacagataga aaaacaactc ttgaatcctg gccagttccg gaaaaagcat ggcaaaggct      3360
     acatctcgat tatgcagggc ctgttaacgg ttactactat ctgattctgg ttgacgcata      3420
     ctctaagtgg ccagaagtga tgcgcactaa agacatcacc acaaccgcaa cattgcgcat      3480
     gctccgcaat attttcgcaa gacacggaca acctgaaaca ttggtcactg ataatggtac      3540
     acaatttacc agtaatatgt tcgaaacatt ttgtgagcac tatagtattg tgcatttgaa      3600
     gactgctcca tttcatccgc agtcaaacgg actagcagaa agattcgtcg acacattcaa      3660
     gagagccctt aaaaaaatta cagcaggggg ggaaacgtta gaagaagcaa tcgacacctt      3720
     tctgctgtgc tatcgttcaa caccatgtcg tagttcaccg gaaggaaaat caccagctga      3780
     gcacatttat aaaagaccaa tacggacagc tctcgaatta ttacgtccac cttcttcatc      3840
     gcacaaagtc catgataaca aacaagaaaa gcagttcaat ctcaaacacg gagcaaagaa      3900
     gcggcattac tcccctcagg acttagtgtg ggctaaagtg taccataaca acaaatggag      3960
     ttgggctcat gggcaagtta ttgagcaaat tggtagtgtg ctgtacaatg tatggttgtc      4020
     atcaacgagg aagctcattc gatcgcattg taatcagcta cgaagtcgac atgaagcaga      4080
     agtttcccag caagagcaac tagcaactac agacgttcag ataccgctgg cgatactcct      4140
     cgataattgt ggtcttaacg atgaagtaga aagagaaacc acaacatcca caacactccc      4200
     atcagaaatg ttggcagacc tggcaccacc acgtcaacga agccgtgttg ggtcaacacg      4260
     taacaacaat caaccaccgg tacctacacg tcaatcatcc agacaacgcg taccaccaac      4320
     cagatacgac gcgtatcatc tttactaaaa aaagggagg                             4359
//
ID   BEL17-I_AG  repbase; DNA   ; ANG   ; 5596 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL17-I_AG is an internal portion of the BEL17_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; integrase; 5-bp TSD;
KW   Bel clade; peptidase; BEL17-I_AG; BEL17-LTR_AG; BEL17_AG;
KW   PHD Zn-finger.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5596
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A., Jurka J.;
RT   "BEL17_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 41-41 (2003).
XX
CC   [1] (Consensus)
XX
CC   BEL17_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL17-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL17-LTR_AG
CC   LTRs. The BEL17-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 11 copies; they are ~2% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1842-aa BEL17_AGp Bel-like
CC   protein
CC   (pos. 34-5559).
CC   BEL17_AGp is composed of the PHD Zn-finger (pos. 9-56), peptidase
CC   A16
CC   (pos. 223-353), reverse transcriptase (pos. 839-1006) and
CC   integrase (1540-1700) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           34..5559
FT                 /product="BEL17_AGp"
FT                 /translation="MGPKRNDHCQACGDQRDDPDFVACDKCNLWWHFSCAG
FT                 LTEPAEAVEQRKWLCVACQAKERSGLIQRTPVKHTEQMEAANANLNLEEVT
FT                 QNVAEKHNLKLVEVIQQAAETPMPSSSGTSYNAVSKPNLTPAKVSDSVANR
FT                 LAIMKRRQEAERKRMELELQLKFVKEEEDLLSEELGVMAISGASTVTPSRP
FT                 DGESMRGSQQDERGPAPRLESFHRNVPTELPEFSGDPAEWPVFIAHYDYTT
FT                 EKCGFSNWENMIRLQKALKGPALEVVRSRLVLPEVVPQVIATLRSRYGRPE
FT                 HLISALIGKMRRMPAPCREKPDTVVAFGEAVRSMVDHMQAAGLRAHLTNPL
FT                 LLQEIVERLPTSEQYSWARHIRGVTEPDLIVFGEFMTEWMDDAETLTRLDS
FT                 PSLKAVDRKKPNTKGYVHAHVENQGATTSGTRAIQVGQSCFVCNKRGHLVS
FT                 KCFAFGAMAVKDRWRKARALSLCFSCLERHNWRTCQNRAVCSIGGCTRRHH
FT                 ALLHGAEESREIGSEQNNIESREGGIDGGVIAESNHHQYVSSSSKALFRIV
FT                 PVTVYGPAATVTTFAFLDEGSSMTLVDDDLAEQLGVEGKVEPLCIRWTGNT
FT                 TRVEAGSRRVNLKVGPVGSTKRFAIHSVRTVPGLNLPRQSFVQDEGRWQHL
FT                 ERLPIRQYRDAEPKLLIGLDNLRLAVPLRTKEGGVGDPIAVKTRLGWCIYG
FT                 KPANLECERLLHICECNDQGNIHETIREYFDMQLIGAAHGVEQDPDERRAK
FT                 QILDTTTARIGKRFESGLLWRKDDIELPPSIDMARRRFNCLERRMERDGHL
FT                 KEQVHRQIRDLLSKQYVHKATLRELEEADQRRVWYLPIGVVTNPNKPGKVR
FT                 LIWDAAAKAHGTSLNDMLLKGPDELSSLLGVLFRFRLYAVAACADVKEMFL
FT                 QIMIRKEDKHAQRFLWRYEPTDELETYIVDVVMFGSACSPATAQYVKNRNA
FT                 REHMEQFPRAVEGIIESTYVDDFLDSFETEEEACQVSHDVREIFRNGGFEL
FT                 RNWTSNSMELMRCLGEANGDIKCLSSMGDEAERVLGMRWNPASDELGFCTR
FT                 ACTTVSDLLIAERIPTKREVLRCVMSLYDPLGLLAMFVIHGKILIQDLWRT
FT                 GTQWDEEINDMQLRHWRRWIDLLPAIADLRIPRSYFAAASKKMYENGEWHL
FT                 FVDASQHAYACVLYLRIFDDAGEPQCTLIGGKAKVAPLKPLTIPKLELQAC
FT                 VLGARFLRYTQEHHPINVRRRVLWSDSTVALSWIRSDPRNYKPFVAHRVVE
FT                 ILESTSVDEWRWVPTDHNPADEATKWKGKPNFDFGGNWFQGPEFLLHGEDD
FT                 WPSQRHNSDNPSEEIRQVNLHVEDSNTGLLPIRYERFSRLERLQRMIGWIV
FT                 RYVGNLRRKYRGEPILGGALRQEELYEADKILWRQTQLEYYPEEVRILSLD
FT                 DNDGKPGGRTVSKQSHIYHLLPFVDDEGVLRMRGRIGAAADVPYSAKYPVI
FT                 LPRGSRLAELIVERYHRLYRHANNETVTNELRQQFQIPKLRALVTKTVKNC
FT                 VFCKIRRSLPQVPPMAPLPKERLTPFVRPFSYVGLDYFGPVLVKRGRSNEK
FT                 RWIALFTCLTVRAIHLEVVHSLSTESCVLAVRRFVARRGAPVEIFSDNGTN
FT                 FLGASRQLRREIEERNETLAAIFTNAHTRWTFNPPGAPHMGGVWERMVRSV
FT                 KAAISTVMEAKHAPDDETFETVILDAEAMINSRPLTYVPLDPENQEAITPN
FT                 HFLLGSSSGVKQQPVLPTNYRDSLKGNWKLAQHMLDGIWRRWIKEYLPVIS
FT                 RQSKWFENVREIRKGDLVLVVDGTIRNQWKKGIVERIMAGPDGHIRQAWVR
FT                 TNTGAVRRPVAKLALLDIAT"
XX
SQ   Sequence 5596 BP; 1465 A; 1184 C; 1717 G; 1230 T; 0 other;
     ttaaaaagcc tttaaaacgg ttccaaaggt gaaatgggcc caaaaaggaa cgatcactgc        60
     caggcttgcg gtgatcagcg ggatgatccg gattttgttg catgtgacaa gtgcaattta       120
     tggtggcatt tttcgtgcgc cggattgacg gaacccgcgg aagctgtgga acagcggaaa       180
     tggttgtgcg tggcttgcca ggctaaggaa cggtccggct tgattcagag gacgccggtc       240
     aagcacacag aacaaatgga agcggcaaat gctaacctca atctggagga ggttacgcaa       300
     aacgtggctg agaaacataa cctcaaactg gttgaggtta tccaacaagc ggcagaaaca       360
     cccatgcctt cttcaagtgg gacaagctac aacgcggtga gcaaacctaa cctcactcct       420
     gctaaggtat ccgacagtgt ggctaatcgg ctagccatta tgaagcggcg gcaggaggcg       480
     gagaggaaac ggatggagct cgagttgcag ctgaagtttg tgaaggagga ggaggacttg       540
     ttgtccgagg agttgggtgt gatggcgatt tcgggagcat cgactgtgac accgtcccgg       600
     ccggatggag aatcgatgcg aggctcgcag caggatgagc gtggtcccgc cccgcgactg       660
     gaaagttttc atcgaaacgt gccaaccgaa ttacccgagt tttcagggga cccggcggaa       720
     tggcccgtat ttattgcgca ctacgattac acaacggaga aatgtggttt ttccaactgg       780
     gaaaacatga tacggctgca gaaggcgctc aaaggacctg cgctagaagt tgtgcgaagc       840
     cgtttagtgc taccggaggt ggtgccacaa gtgattgcga cgctgcgatc gcgctatggt       900
     cggccggaac atctcatttc agcgctgatt gggaaaatgc gtcggatgcc tgcaccttgc       960
     agggagaagc ccgatactgt tgtggcgttc ggcgaggcag tgcggagcat ggtagatcac      1020
     atgcaggctg ctggtctacg ggcacacttg accaacccgt tgctgctgca agagatcgtg      1080
     gaaaggttgc cgacgagcga gcagtacagc tgggcacggc acatacgagg cgtgacggaa      1140
     ccggatctta tcgtgtttgg cgaattcatg acggaatgga tggacgatgc tgaaacgtta      1200
     accaggctgg attcaccctc attgaaagca gtagacagga agaaacctaa caccaagggt      1260
     tacgtgcatg cgcacgtgga aaaccaggga gcgaccacat cgggaacaag agccatccag      1320
     gtaggacaat cttgttttgt gtgtaacaaa cggggacacc ttgtgagcaa atgcttcgcg      1380
     tttggagcaa tggcggtgaa ggaccgctgg cggaaggccc gtgcactttc tttatgtttt      1440
     agctgtctgg agcggcacaa ctggcggacg tgccaaaaca gagcggtttg cagcattggt      1500
     gggtgcacgc gccgacatca tgcgttgcta cacggcgctg aggagtctcg cgagatcggc      1560
     agcgagcaga ataatataga aagccgtgaa ggaggaatcg atggtggtgt cattgcggag      1620
     agtaaccatc accaatacgt gtcatcatca tcgaaggcgc tatttcgaat agtgcctgtc      1680
     accgtgtatg gaccggctgc tacggtgacg acgtttgcgt ttttggatga aggctcgtcc      1740
     atgacgctgg tggatgacga tttggctgaa caattaggtg ttgagggcaa ggtggagcca      1800
     ctttgcatcc gttggacagg caacactaca agggtcgagg ctggatccag acgagtaaac      1860
     ctgaaggtgg gacctgttgg ttctacaaag cggtttgcca tccactcggt acggactgtg      1920
     ccagggctaa acctacctcg acaatccttc gtgcaggacg aagggagatg gcaacatttg      1980
     gagcggctac cgattcggca atatcgggat gcggaaccca agctgcttat tgggttggac      2040
     aatttgcggt tggcggtccc tctcaggact aaggagggag gcgttggtga tccaatcgca      2100
     gtaaagacac gccttgggtg gtgtatttac ggaaaaccgg cgaatctgga gtgtgaacgg      2160
     ttgttgcata tttgcgagtg caacgaccaa ggtaacattc acgagacgat tcgggaatat      2220
     ttcgacatgc agttgattgg tgctgcacac ggcgtcgaac aggatccaga tgagcggcgt      2280
     gcgaagcaga ttctggacac taccacggca cgaatcggga agcgattcga atcgggatta      2340
     ctgtggagga aagatgacat cgagctacct cctagcatcg acatggcgcg tcgtaggttc      2400
     aattgtttgg agaggaggat ggagcgagat ggacatctta aggaacaagt acatcgccag      2460
     attcgagatt tgttgagcaa gcagtacgtt cacaaggcta cgttgcgtga gctggaggag      2520
     gctgaccagc gacgcgtatg gtacctacca ataggggtgg ttaccaaccc aaataaacct      2580
     ggaaaggttc ggctgatttg ggacgcggca gctaaggcgc atggaacatc gttgaacgac      2640
     atgctgctga agggaccaga cgagctgagc tcgttacttg gcgtactctt ccgatttcgt      2700
     ctgtacgcag tggcggcgtg tgcagacgtg aaggagatgt ttttgcagat tatgatacga      2760
     aaggaagaca aacacgcgca gcgtttcttg tggcgttacg aaccaacgga cgagttggaa      2820
     acctacatcg tggatgttgt aatgttcggg tctgcgtgtt cacccgcaac ggcgcagtat      2880
     gtcaagaacc gaaacgctcg agagcacatg gaacaattcc cacgagcggt ggagggaatt      2940
     attgaaagca cttacgtaga tgactttctg gacagcttcg agacggaaga agaagcatgt      3000
     caggtatccc atgacgtaag ggagattttt aggaacggcg gatttgagtt gaggaattgg      3060
     acctcaaaca gtatggaatt gatgagatgc cttggcgaag caaatggcga catcaaatgt      3120
     ttatcatcca tgggagatga ggcggaacga gtattgggaa tgcgatggaa ccctgcatct      3180
     gacgagcttg gattttgcac tagggcgtgc acgacggtgt ctgacctctt gatagcagag      3240
     aggattccaa cgaaaagaga ggtattgcga tgtgtgatgt ctctttatga tcctcttggg      3300
     ctgcttgcga tgttcgtgat ccacggcaag atcctgatac aagatctttg gcgaactggc      3360
     acgcagtggg acgaagagat taacgacatg cagttgagac attggcgtag atggattgat      3420
     ctgcttccgg caatagcaga cctacgcatt ccgcgcagtt actttgcggc agcatcgaag      3480
     aagatgtacg agaatggcga atggcatttg tttgtcgatg caagtcagca cgcttatgca      3540
     tgcgtcttat atctgaggat atttgatgat gctggagaac ctcagtgtac actcatcggt      3600
     gggaaagcta aggtggcgcc actgaagcca cttactattc cgaagcttga gcttcaggct      3660
     tgcgtgttgg gagcgagatt tttacgctac acgcaggagc atcatccgat taatgtgaga      3720
     cgacgagtgc tttggtcgga cagcacagtt gcgttgtcgt ggataaggtc ggatccaaga      3780
     aactacaaac ccttcgtggc tcatagggtg gtcgaaatac tggagagcac atcggttgac      3840
     gagtggagat gggtgcctac tgaccacaac ccggcagacg aggccacgaa gtggaaggga      3900
     aagccgaatt tcgactttgg tggcaactgg tttcaagggc cagagttctt actccatggg      3960
     gaggatgatt ggccatcaca gaggcacaac agcgacaacc cgtcagaaga aatacgacag      4020
     gtaaatcttc acgtggaaga ctctaacacc ggactattac ctatccggta tgaacgtttt      4080
     agccgattgg agaggctaca aaggatgatt ggttggattg tcaggtatgt gggcaatctg      4140
     agacgaaagt atcgtggcga acctatttta ggaggtgctc tacgacaaga agaactctat      4200
     gaagcggata agattctgtg gaggcagaca caactcgagt actatccgga agaagttcgc      4260
     attctgagtt tggacgataa cgatggaaaa cctggaggaa gaacggtatc aaagcaaagc      4320
     cacatttacc atctattgcc gtttgtggac gatgaaggcg tattgcgaat gcgaggaagg      4380
     ataggtgcag cggctgatgt tccttattct gctaagtatc ccgttatact gccgaggggt      4440
     tcccgactgg ctgagttgat agtagagcgg tatcatcgat tgtatcgtca tgcgaacaac      4500
     gaaacagtga cgaatgagtt acggcaacaa tttcagatcc cgaagctgag agcgttggta      4560
     acgaagacgg tgaagaactg tgtcttctgt aagatcaggc ggtcactacc acaagtgccg      4620
     ccaatggcac cgttaccaaa ggagaggctc acgccctttg ttaggccatt cagctacgtc      4680
     gggctggatt actttggacc agtgttggtc aagagaggaa gatcgaacga gaagcgttgg      4740
     atcgctttat tcacgtgttt gactgtgcgc gcgattcact tggaggtggt gcacagtcta      4800
     tcgacggaat cgtgcgtgtt ggcggttaga cgatttgtgg ctagaagagg tgcaccggta      4860
     gaaatcttca gcgacaacgg gaccaatttc ttgggtgcta gcaggcagct gcggagggag      4920
     atcgaggagc gcaatgaaac tctggcggcg attttcacga atgcgcacac ccgttggacc      4980
     ttcaacccac ctggcgctcc acacatgggc ggcgtgtggg agcgtatggt acgctctgta      5040
     aaagcggcga ttagcacggt gatggaggca aagcacgcac ccgacgacga gacgtttgag      5100
     acagtgatct tagacgcaga ggcgatgatc aactctagac cgttgactta tgttcccttg      5160
     gacccggaga accaagaggc aatcacaccg aatcatttcc tgttggggag ttcttcaggt      5220
     gtaaagcagc agccagtgtt acctacgaac tatagggata gcttgaaggg aaattggaag      5280
     ttagcgcagc atatgctcga cggaatatgg aggcggtgga ttaaggaata tttaccggtg      5340
     atctcgcggc agagtaagtg gtttgaaaat gtgcgggaaa ttaggaaagg agatttggta      5400
     ctggtagtgg acggaacaat caggaaccag tggaagaaag gaatagttga gcgaattatg      5460
     gcaggacctg atggtcatat aaggcaagcg tgggtacgca ccaatacagg agcagttagg      5520
     aggccagtag ctaagctagc actgctcgac atagcaactt agggtgacca aatatggttg      5580
     gtcacgggcg ggggaa                                                      5596
//
ID   TRANSIBN1_AG repbase; DNA   ; ANG   ; 978 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   TRANSIBN1_AG is a TRANSIB-like DNA transposon - a consensus
DE   sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat;
KW   nonautonomous DNA transposon; 5-bp TSD; TRANSIB superfamily;
KW   TRANSIBN1_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-978
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIBN1_AG: a family of target site-specific nonautonomous
RT   TRANSIB DNA transposons from African malaria mosquito.";
RL   Repbase Reports 3(4), 83-83 (2003).
XX
CC   [1] (Consensus)
XX
CC   TRANSIBN1_AG is a family of nonautonomous DNA transposons that
CC   belongs
CC   to the TRANSIB superfamily originally identified in Drosophila
CC   (see
CC   description of TRANSIBN1-TRANSIB4 in drorep.ref).
CC   TRANSIBN1_AG is characterized by a remarkable target site
CC   specificity.
CC   Its copies are inserted into the CCagtGG target site, and CagtG
CC   is
CC   a 5-bp target site duplication. There are ~100 copies of
CC   TRANSIBN1_AG
CC   in the genome.
CC   The TRANSIBN1_AG consensus sequence was reconstructed based on
CC   multiple alignment of 30 copies. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   TRANSIBN1_AG occurred recently (in the last 1 Myr).
CC   TRANSIBN1_AG has 17-bp terminal inverted repeats (2 mismatches).
XX
SQ   Sequence 978 BP; 332 A; 167 C; 163 G; 314 T; 2 other;
     cacagtgggc aaccgccata caaacgccgg gatgaaaatc aattcctcgt gctattgcar        60
     tttwtcttca ttcaatacaa ttgctcttac tatacagggt agtcctatac taaaatcgtc       120
     aagacagcga ataaaactta ataattatcg ctcacaacat tgcattattg cgtatcagtt       180
     aacagcatca ataataattg ttaggaatta aaacgaaggc ggaataagtt tctgactgaa       240
     aacgaatttt taaagtatta cgcactaaaa aagttgtgtt tttcatggtt tgtttggaaa       300
     agagccgatt cctatcttac gacctttttt aaactgtttt tcctctcttc agctttgttt       360
     tctgcctgtt tgtttcaaat gcccgtttat gacaggtagt tggatactgg tggtgtatgg       420
     ctcatacaac aacacgtcaa aatcgctcgc gctattttca agaaaaagtt taataatttt       480
     cggggtcgca gatggtcgca gctaatttta acgacaatgc gtaggaaaat tgttgatctt       540
     tccaatgata tacgactcac gagtgaaatc gagtcgaatc ataaaaaaaa tcactctcca       600
     aaataaaaat atccaaaaat tcagcagtga tgtttggttt tcaatcattt atgaacttta       660
     aaaacaagtt tttgcaaaat attaagacat aacatcaaag tatgacaaaa aacctttcca       720
     acgacacatt gattatcaaa atctaaccat catatactaa aatatgatgg tttatgttcg       780
     gtcgaaaaat agctcaaagt tgggacaaaa aacccaaagt ttacactttg atggcctata       840
     tctcagtaag tttaagataa aaacgtgaaa tattttggtt tcaactaagt ttaagtatct       900
     attttaagaa aatgattatg gtgtaaacct gcgatgaagt tggtttttcg atttttatac       960
     aggcgtttgc ccaatgtg                                                     978
//
ID   TransibN3_AG repbase; DNA   ; ANG   ; 959 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   12-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   TransibN3_AG is a family of nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; non-autonomous;
KW   TransibN3_AG.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-959
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology (2005).
XX
CC   [1] (Consensus)
XX
CC   TransibN3_AG is a family of nonautonomous DNA transposons that
CC   belongs to the Transib superfamily. TransibN3_AG elements are
CC   characterized by 13-bp terminal inverted repeats (1 mismatch) and
CC   5-bp target site duplications.
XX
SQ   Sequence 959 BP; 336 A; 154 C; 145 G; 324 T; 0 other;
     cacagtgggc agctgccggg atgaaagtcc aaaaattaat tatcatattt ctttaatccg        60
     aggaaagcat tgtaatctac agtatcaaac taagaaaaac acgagatttc agtcccctag       120
     tcgtattagt tattacgata gagactccta aagtcttagg tcttgaaaaa actcatcata       180
     acaactatat ttttttacct tctttaaacc attgtaactt tcacaaaaat caatcaaatt       240
     ttaaaaatga atatgttttg gaaaggtttt aatctattct aaacaaaaat atttagttta       300
     tgaaaatatg tcaattactt aaaaagttaa agagtatagt gtgcactact tcctctaaat       360
     tgtatcaatc atgtatcttt gacatcatgc caaatttgaa caccgtaaaa caccgtggta       420
     tcatgtatac cacgtcaaag ctttacatct aaacaaaaga tctgtaaaga aattagccgc       480
     tactttcgcg caactttggc agatattggc attttaatga cagtataaaa tactttcaat       540
     aaaacaaagc gttttctggt gaagtatgac taatatccgt atatttggga tgtttagggc       600
     agtttttgat gaaatttgat catcgaatgt gatgatcaat gatgacgtga tgattgatca       660
     tcgatatttc ggaatgttgc tagcaaacca aatgtaccat gtaagcttta ttttattaca       720
     gtcagggtac gtagtatatt aagtataacc ccgtatattc gttacgcagc caaagaagaa       780
     catgtatggg atagtaagga tattttcaaa aataattata atctttgcta cataatcata       840
     aaacattcat attttgttta atttagattt tcaacattta cactataatg tacctaagaa       900
     atcatgtatt caatgacaat tacttttatc ccgctttttg ttctacggtg cccactgtg        959
//
ID   RETRO56_AG_LTR repbase; DNA   ; ANG   ; 141 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO56_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; MAG; RETRO56_AG_I;
KW   RETRO56_AG_LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-141
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO56_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 12-12 (2002).
XX
CC   [1] (Consensus)
XX
CC   Related to MAG from Bombyx mori. 5 bp target site duplication.
XX
SQ   Sequence 141 BP; 49 A; 27 C; 26 G; 39 T; 0 other;
     tgttgcatag taacacgcat aacgcagtaa cattgcaaga ctcgatcaga gtacacattg        60
     agtgaataaa gacgattcca ttctgaacta aggaataaag cagttgtgtt tttctcaaga       120
     tatattccct gcgacatatc a                                                 141
//
ID   HARBINGER1_AG repbase; DNA   ; ANG   ; 5377 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   HARBINGER1_AG is an autonomous DNA transposon - a consensus
DE   sequence.
XX
KW   Harbinger; DNA transposon; Interspersed Repeat; transposase;
KW   Harbinger superfamily; HARBINGER1_AG; MADF/SANT.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5377
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGER1_AG, a family of autonomous Harbinger-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3(2), 17-17 (2003).
XX
CC   [1] (Consensus)
XX
CC   There are ~20 copies of HARBINGER_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   HARBINGER1_AG copies are flanked by the TWA 3-bp target
CC   site duplications. This element has imperfect 40-bp terminal
CC   inverted repeats (5 mismatches) and subterminal TIRs (positions
CC   54-106 and 5269-5321).
CC   The HARBINGER1_AG consensus sequence encodes two proteins:
CC   a 471-aa HARBINGER1_AG1p transposase and a 245-aa HARBINGER1_AG2p
CC   MADF/SANT-like DNA-binding protein. The MADF/SANT domain is
CC   present
CC   in various transcriptional regulators and is involved in the
CC   chromatin remodeling. Putatively, HARBINGER1_AG2p
CC   was recruited by the transposon from the host genome.
CC   HARBINGER1_AG1p is encoded by 4 exons: positions 452-805,
CC   875-952, 1396-1596 and 2345-3127.
CC   HARBINGER1_AG2p is encoded by 4 exons in -strand: positions
CC   5133-5095, 4587-4359, 4287-4196, 2229-1852.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="HARBINGER1_AG1p"
FT                 /translation="MSEPELENDNNEVRDRSRSRSRSPQARRLWVQDLFLN
FT                 RNETGNRLLTDITTSGIYETMNRFLRMKKEDFFHLLSLVGPKIAKMDTDFR
FT                 KAITEQERLLITLRYLATGETFTSLQYVFRVSRHSISRIVKETCACLIEAL
FT                 RDYVKSQPESIPIRGCSGCARSELESNPTRGCNEFGSTRLCFLAPTDLSGR
FT                 PELVATEPTVARPDPNSQHQRLPSTEEEWLAISRRFEQRWRFPHAIGAIDG
FT                 KHVEIICPRNSGSEYHNYQKFFSIVLMVVVDADYNFLWADAGGKGGISDGG
FT                 IFKNTRLYHKLENDQLNIPPATPLQVPYQTPVPYFILGDKAFAFTNYCLRP
FT                 YSGVHPPDSMERTFNKMHSTCRMPVENSLGILANRWRVLKGIQLQPDVAKN
FT                 IVLTTVYLHNFLRKHASRDTYTPPSAFDRVVRGRRVDGDWRSEGGLTDLQN
FT                 IASRPSENLADIRNHIANHLKHNRST"
FT   CDS           0..0
FT                 /product="HARBINGER1_AG2p"
FT                 /translation="MEQAGSSRRNEKIDHEKSLRFIAEVQKHRVLWEKKNK
FT                 NYKNVVLKGDAWAAIAAKEEVSPQDAKHLWSRLLGIYRTNKAKVKKTTQTG
FT                 AGNDDVFRPRWFAYQAMSFVDEATQDAVHVDTLGYDDEGLTPRSLVEAAYA
FT                 VPQSLDDIDWDAAVAFDPEPFSPTPSSYPSALSVTPGTIREGNGVSGALNN
FT                 RLQQPVSGATGAPETADPDDFGRYVADELRLIPSPKRRRIMSIQRELLETL
FT                 KKNL"
XX
SQ   Sequence 5377 BP; 1580 A; 1209 C; 1120 G; 1466 T; 2 other;
     aggccgggct acattgatcg tactcgcaag cgtaattttt atattcacta gcgcatctgg        60
     cggcgaccag cgcaagctag atgtgggtat aatttaagtg ccaaaattat tcatgcttgg       120
     tgtctcatca attttcgacc aggctgtctg tatgccgttt gacatgttga tcaaaatcaa       180
     taaattgcta caggtcagga cgccgagtac tgctgggcaa atcgtcattt gacagttggg       240
     tgcctaagct tcatacaaag cgcacgacaa cattccttcc catctgccaa actccatcca       300
     tcatggcttc cacagccaaa tcttccacat ataattgtag tctatgttat caccttgatc       360
     gcagcagtgt gcattgttta tcgtttgaat cgtttgccgg ccggtgttta gtagaagtga       420
     aaattttggt ggttctcgat tttttggaaa aatgagcgag ccagagcttg aaaatgacaa       480
     caacgaagtc cgggatcgtt cccgatctcg ttcccgtagt ccgcaggcac gtcgtttgtg       540
     ggttcaggac ttattcctga accgaaacga aaccggcaac cggctactga ccgacatcac       600
     gacatcgggt atatacgaga cgatgaaccg atttttaagg atgaagaagg aagatttctt       660
     ccatttactg tcccttgttg gtccaaaaat tgcgaaaatg gacacagatt tccgcaaagc       720
     aatcacggaa caggaaaggc tgctgataac attgcggtat cttgcgactg gagagacatt       780
     taccagcctc caatacgtgt tccgggtaag taatattatt tttgcttttt gctttttgct       840
     aagcacactt ttatcaatca acatataatt ttaggtgtcg aggcattcta tcagcagaat       900
     agttaaagag acgtgcgcat gtcttatcga ggctttgcgg gattatgtca aggtaagttg       960
     cgggtgtaac cagcctcgct tcagtgttta tgtgtttaaa acgttcagcc cggtggcagg      1020
     caccagggcc tgccagtaaa ctttcccgtt tgccggggcc aaccattgct ctggggactc      1080
     tttggctaga gaaacagaat acattgcgaa caactgtact ctaatcgcat gaatacaacg      1140
     gtgtgaaggt aaaaaaatga ttttctaaat attattgcga ttgataaaga catcaaccca      1200
     cacacaacag tattgatgaa gagagtagag ttgaaattat agcgaaaaac ctcatttttt      1260
     ctacatgcat ctttggatca aaattcactg cttgggtagt agatgccggc ggatagttca      1320
     tgaaaaacgg agccggaatg aacgtgtgaa atgtgctgca ctacgttttc ctcttsaacg      1380
     tcctcgtata aaaagagtca gccggaatcg attccgatcc gtgggtgcag cgggtgcgct      1440
     aggtcggagt tggaatcaaa tccgacccgc gggtgcaacg agttcgggtc gactcgctta      1500
     tgctttctcg cacctactga tctttcgggt cgacccgaac tcgttgcaac cgaacctacc      1560
     gtggcccgac ccgacccgaa ctcgcagcac caacgggtcg gagtcgttta tgctttctcg      1620
     cacctaccgg agtatttgca cccactgaaa ctacttatac cttttgggtt gacccgaacg      1680
     actccgggtc gctttcggat ggctccgacc cgataggttc gggtcgaccc gcccattact      1740
     aaaaggttca tgtaatatga aaacggaaac tttttttttc ctcgaacgta gctcttcaat      1800
     caagtaacta atgtgatata caaaactcaa aaagtattca aagttatgtt tttaaagatt      1860
     tttttttaat gtttctaata actcccgctg aatactcata atgcgtctcc tttttggaga      1920
     cggaataagc cgaagctcat cggccacgta ccggccgaaa tcgtccggat ctgcggtttc      1980
     cggtgcgcct gttgcgcccg aaaccggttg ttgcagccgg ttgttgaggg ccccactcac      2040
     accgtttccc tcgcggatcg tgccaggagt gacggataag gcagaagggt aggaagaagg      2100
     agtgggagag aatggctcgg ggtcgaaggc aaccgcggca tcccaatcga tgtcgtccaa      2160
     cgattgtgga accgcgtagg ctgcctccac gagggaacgg ggagtgaggc cctcatcgtc      2220
     gtagccaagc tgaaaaaaaa agaaaatgaa cattaaaatc ataatttatg tttctcataa      2280
     gctctaaaat atacagtaac taaaacatgc attgaaatca ttcctctatt ttattttctt      2340
     ttagctaccc tctaccgaag aagaatggct tgcaatctca agacgatttg agcagcgctg      2400
     gagatttcct cacgcaatag gtgcaatcga tgggaagcac gttgaaatta tttgccctcg      2460
     taatagcgga tccgaatatc acaactatca aaaatttttt agtattgtat taatggttgt      2520
     ggtcgatgct gattataact ttttatgggc agatgctggt ggtaagggag gaatatcgga      2580
     cggtggaata tttaaaaaca cacggctgta tcacaagcta gaaaacgacc aactaaacat      2640
     tccaccagca acgccattgc aggtcccgta ccaaacccca gtcccatact ttattctcgg      2700
     tgacaaggca tttgccttta ccaattactg cttaagaccg tacagcgggg tgcatcctcc      2760
     tgattcaatg gagcgtacat tcaacaaaat gcactctact tgtcgtatgc cagttgaaaa      2820
     ttcgcttgga atattagcga atcgatggag agtgctcaaa ggcatacaac tgcagccgga      2880
     tgttgccaaa aacattgttt tgacaacagt ttacttgcac aattttttgc gcaagcatgc      2940
     ttcgcgggac acatacacac ccccgtctgc atttgatagg gttgttcgcg ggcgacgagt      3000
     cgatggagat tggagaagtg aagggggctt gaccgatctc caaaacattg cttcccgacc      3060
     ttcagaaaat cttgctgaca taaggaacca cattgcaaac catttaaaac ataatcgttc      3120
     tacgtaaatc catccaacca ataccatgga tattaaaatt aataataaat tatgaaatcg      3180
     caaacacaac tacaccgact attctgtaca ttactaccag catggttatt tataatatac      3240
     atttaagtac gcgagtgcaa caactacgga tttttttaag cattactcgc ctgctctatt      3300
     agcggctgga taaactggct ggcttactag ctcactcacc gaataaacgt ggccacatgc      3360
     ctgttgtgtt tggttgctgc tggtggatcg agtggacgaa cgtggcgata atcatacgca      3420
     ygtaactatg tacagtaaaa tctttctaaa atcaattctc ttcaagattg atcatggaga      3480
     aacttaacta tagctacgta cacgatagcg actcgcccaa acacattatc ggacgaattg      3540
     gccatcgacc cgctgaaata gcggagtatc acggacgatc gtaacaagca gggtacgctc      3600
     gtctatcaac tacgcacctg cttccagcgc aacgatcgat tgccaattgt tattgccgat      3660
     tgcaattgca caacgagcga agaaagaatc catcgtcatg tcagcactat gattccggac      3720
     ggctatacat attggtctcg tgctgttgac gtggtgcgct ggtcagcatt tcctgcttgt      3780
     cgtgatcgtc cgtatatgtg tacattttaa ggatcatagg aacacttcgt gtgtgaaatg      3840
     attcatttgt attaaaactt tgacgaacga agcacatact actgtggtgt tatggggaaa      3900
     accaccatga tatactttgt tcgtcaaaat gttaattata taagtgcaaa agagagcttt      3960
     tttatgtata taacaaacga gcttcgcatt aagttagtta aatagaatgt gagtaaggtc      4020
     aactagttcg tcggagaaca tctatcaatc atggataccc aaatgtgttg atgctcaata      4080
     ctaggcattt atgaaaaaaa tgatttgaaa gctgacatta gcttccacgc caaagattaa      4140
     acaaactagt taacccacac cactagttat ttaaaataag tataaacata ctcaccgtgt      4200
     ctacatgcac cgcatcttgg gtggcctcgt ctacaaaaga catcgcttgg taggcgaacc      4260
     accgtggccg gaacacgtcg tcattgccta aaataaaaca ataataaatt gggatgagaa      4320
     ataataaatt aactgtatat atattttcct acatgtacct gcaccggttt gcgtcgtctt      4380
     cttgaccttg gccttgttgg tccgataaat gccaaggagt cgggaccaca gatgtttcgc      4440
     atcttgtggc gaaacctcct ccttggccgc tatcgcagcc cacgcgtcgc ccttcaaaac      4500
     tacattttta tagtttttat tttttttctc ccacaaaaca cggtgctttt gcacctcggc      4560
     aatgaagcgg aggctttttt catgatcctg gaatgaaaaa gaaaattcag ttaaatactt      4620
     ccctttttta atttaaatta aaacaacaga aaggtcgaca atcgcgtgat aattcggtca      4680
     tgctagccgt cacaccggaa ccacagtgat aataataaca cgtgctattt ttatattaaa      4740
     tgtatacaaa taggccggta aattttgctt acaattttat aaaaaaaagt tctaccaagc      4800
     aatatgacaa agccgttcct catgaataaa aaaacacgct ctatactaaa aaccgctaca      4860
     ataccaaaac gaacaaccag tttcacacac tctgcaatgt agtttaaatg atgaaataga      4920
     tggacaaacc ctacaacaaa ttatttaagc acttgtgaaa cctacaaaca ctacattttt      4980
     caataaaatg ttcagcacaa ttgcggcccc gagccgagcc ggcgattcac agacaacagt      5040
     tcacacacac acacacacac acacacaatt ttcgttaaaa acagttgtac ttactatttt      5100
     ttcattgcgt cgactgcttc ctgcttgttc catggctaga aatacaatat gtatgttaaa      5160
     ttaccacata ttttcaaaaa aacatacacg acaaaatatc gaacatactc accgagctgt      5220
     ttgtttactg gtttgtgatc aaaattatag gctcctcgac ccaaaacgct ttttgacaga      5280
     taaattatac cagcctctag cttcgacccg ccgccgctag atggcgtacg cgttcacaaa      5340
     aattacactc aggagtacga tcaatgtagc ccggcct                               5377
//
ID   PegasusA    repbase; DNA   ; ANG   ; 3696 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   16-JUN-2003 (Rel. 8.05, Last updated, Version 1)
XX
DE   PegasusA is a hAT-like autonomous DNA transposon - a consensus
DE   sequence.
XX
KW   hAT; DNA transposon; Interspersed Repeat; HAT superfamily;
KW   Autonomous DNA transposon; transposase; MITE; 8-bp TSD; Pegasus;
KW   PegasusA.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-159
RA   Besansky J.N., Mukabayire O., Bedell A.J., Lusz H.;
RT   "Pegasus, a small inverted repeat transposable element found in
RT   the white gene of Anopheles gambiae.";
RL   Genetica 98, 119-129 (1996).
XX
RN   [2]
RP   1-3696
RA   Kapitonov V.V., Jurka J.;
RT   "PegasusA: a family of autonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(5), 97-97 (2003).
XX
CC   [2] (Consensus)
XX
CC   PegasusA is a family of autonomous DNA transposons that belongs
CC   to the hAT superfamily. The PegasusA consensus sequence was
CC   built from 4 copies ~3% diverged from it. PegasusA encodes the
CC   499-aa PegasusAp hAT-like transposase (exons 312-600, 1347-2053
CC   and 2317-2820).
CC   Nonautonomous derivate of PegasusA was described as PEGASUS [1].
CC   PegasusA is flanked by imperfect 16-bp terminal inverted repeats
CC   (4 mismatches).
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="PegasusAp"
FT                 /translation="MSKTSGEKRKLREIIAEGCVGFENGHFVCTIDEVNGC
FT                 KYRQKNEKYEPGNFIRHIRSMHPDLAKSRGLLQEDGEVPIKKRKVSKVPVA
FT                 IDRQKLLEGRPQENCSLPNHYLDLTEAIEKEFYQYITLVRCAVHTMQLSVV
FT                 DVVKTFDGEIRKCTAVSNNCRKIMYKTVFNNESLPPLYSKTRWGGIFEMLN
FT                 HFFKQEDFFNELGQQHSELGEIYYINEKVFPYLNISFFSDLTEQWDFIKEY
FT                 VVAFVPVYISTKAMQAKHTSLNDFYLSWMKTILKVGSIPGNRFVEPLTKAL
FT                 KNRLKNLKESIVFKAALLLDPRFNYLNSKFFNQEEKEEIRSFIISTSERIH
FT                 LCKAKVQPSSSSSPSNAPNGTLNSSSDFDLYFTELYGGSLPEQNAEEIQTS
FT                 ANKILRQLISLDAEAHQNSHFDVWNFWLMRKSTHPELYEVATLLLSVPSNQ
FT                 VSVERAFSALGLVLSDKRTRMNDDTLENILLIKLNQPLLEKILPDLYEWNK
FT                 EDI"
XX
SQ   Sequence 3696 BP; 1274 A; 635 C; 645 G; 1141 T; 1 other;
     cagtgttgcg aacggtgata gtcgtcgaca caaaatttta caaaatgata ctttttgaag        60
     cagcgcattc tagatacacg ctttcgttcg acaatcatgg aaaaaaatat catttgacac       120
     gatgatattt ttttgtagta ttcatttgat tgtgattttc ccgggataca agcaacttag       180
     gtcatgttga acgcagttgg ctttgcgttt gtcgtcctaa aatcagtggc gttagtgaac       240
     agaacaagct tattctgagt gaaacaagga agtaaagaaa cacattccaa ttctaatatt       300
     cttaaataaa aatgtcaaaa acatcaggag aaaagcggaa actccgtgaa attatagcag       360
     aaggttgtgt tggtttcgaa aatggacact tcgtttgtac tatcgacgaa gtaaatggtt       420
     gtaaatatag gcaaaagaat gaaaaatatg agccgggtaa ttttatacgc catatacgat       480
     cgatgcaccc agatttggca aaatcccgag gattgctgca agaggacggt gaagtcccca       540
     taaagaagag gaaagtttcc aaagttccgg tagccattga ccggcaaaag ctcctggaag       600
     gtatttaata tatttaattt ttttttctgt ggcgattacg tcaaataata tttactcaag       660
     ctttattaat aacaataagt attaactaaa tgttatttaa atattaaacg ctctctaaat       720
     tgtcgtttct aaaggtatga tgaagctaat atgttgccat aacgtaccta tgatgttcgt       780
     cgaatgggac ggcttagggt agatcctgaa acctatttgt gatgcgttga agatgaacct       840
     caaccgtgct aatattgttt gtcatcttgg agctgctgct cgaaaaattc gccaggaact       900
     taccacaatt ttgaaaggaa aattcttatg cttgaaaatt gactgcgcaa ctcgtcttgg       960
     acgccacata ttggggatca acatccaata ttattgtgaa ctacaaaagg atgtcatcat      1020
     ttatacaatt ggtaataatc ctcattctca agttaatctt tttaaaaaca cgcatgcgat      1080
     ttgcagcgag tttcatgttt tacctatcgt gaaagtattg atgaagtatg aataactctt      1140
     tgtttaaatt aaattcaata ggaatggttg agctgaataa tagacacacc ggaaaatttt      1200
     tgaaaacaaa gatcctagaa atactcactc aatacgaaat ttcattggaa caaattttca      1260
     cggtcacctg tgataatggt gcgaacatga tcgctgccgt taagcatctt caatcagatg      1320
     cccaggtcat gttcaaccca ctwgaggacg cccacaagaa aactgttcac ttccgaatca      1380
     ttatttagat ttgacagaag ccattgaaaa agaattttac cagtatatca ctcttgtaag      1440
     atgtgccgtt cataccatgc agctttcggt agtagatgtg gtcaagacat tcgatggaga      1500
     gattcgtaaa tgtactgcag tatcaaataa ctgccggaaa attatgtaca agactgtttt      1560
     taacaatgaa tctctcccac cgctctactc aaaaaccaga tggggaggaa ttttcgaaat      1620
     gttgaaccat ttttttaaac aggaggattt cttcaacgaa ctgggtcagc agcattcgga      1680
     attaggtgag atttattata taaacgaaaa agtttttcca tacctcaaca tttcattttt      1740
     ttcagattta acagaacaat gggattttat aaaagaatat gtagtggcgt ttgtgcctgt      1800
     ctatatttca acaaaagcca tgcaagccaa acatacatca ctgaacgatt tttatttatc      1860
     ctggatgaag accattttga aagtcggttc aattccagga aatcgtttcg ttgaaccgct      1920
     tacaaaagcc cttaaaaatc ggttaaaaaa tcttaaagaa agtattgttt ttaaggccgc      1980
     gcttctactt gacccaagat tcaattattt gaactctaaa ttttttaatc aagaagaaaa      2040
     agaagaaatt cgcgtgagta acatatttca gacttcattc taatttctat attctacatt      2100
     acataaaaca atattttaat tacaattact taatgttgcc agcttagcct ttaaaaaata      2160
     tgtttgtgac acaaattaaa gcagtacaaa tcgagttgtc ttatgcgtta ggcaataagt      2220
     tgatacgtgt gacgtggatc caagatgacc acaaataact caatatttaa attaattttg      2280
     tttccatatt aaaatgatat ttacgtataa ttatagagct tcatcatctc tacatcggaa      2340
     cgcatccatc tatgtaaagc taaggttcaa ccatcttcat catcatcacc atctaatgct      2400
     ccgaatggga cactaaatag ctccagtgat tttgatttgt attttactga actttacgga      2460
     ggatcattgc cagaacaaaa tgctgaagaa atacaaacga gcgcgaacaa gattctacgg      2520
     cagctgatat cattggacgc agaagcccat caaaactcgc attttgatgt ttggaatttt      2580
     tggttaatgc gaaaatccac tcatcctgaa ctatatgaag tagcgacatt acttttgtca      2640
     gtaccatcaa accaggtatc tgtggagcgt gcttttagcg cacttggttt ggttttatct      2700
     gataaacgga ccagaatgaa cgatgatacg ttggaaaaca ttttactgat caagctgaac      2760
     cagcccttgc ttgaaaaaat tctacctgat ttatatgaat ggaataagga agatatttaa      2820
     ttactttaag ggggttttaa ttggggttta atattgttac acctaatata atgaaaaaat      2880
     ataacagtat aagtataaca ataataaaat aaataaaacc attttttaat tgaattggcc      2940
     tttgttacat aagaatttca ttctgcagga aatctttttc aatatcggca tcataaaata      3000
     aaaatataac gaaccctcct agaacatttt ttttaaccgg caagtccaaa aaatgcaaat      3060
     gtaagcttaa actcacgcta acattcaatt acaactcaca tatattttaa caaaccacat      3120
     tgagacattt caaagataaa aaagaaaaat cagaaagggg tgaaaaactc agagttgaaa      3180
     aaccttcaaa aactcttcca tgtattcttt ttttatacgg ggccatggtg gcagggaatc      3240
     ttggaagtgg gtgctgtttg tgttagccaa taaactacca agcagtttta taagcaacat      3300
     ttcgtggatt tctgtaccca agttccttaa aattccactc aataaattgt tttgtaatgc      3360
     ctgaaaaatg taccaatctg taaaattaat gaaattgatg ctatgttaaa agcgtacact      3420
     gggaaagtta aaatataaaa tttttaaaat tttatgtgaa cacctacagc cgacatcaca      3480
     tttcagcgat ttgtatcgag caaaaaaatg tcaaatgaca ttcattctac tctttttgca      3540
     atcatgtcat cgcaaaagca ttgattgtta ttgcacaaat gattgtcgct cttggaaagt      3600
     cgtgtcatgg taaccatgaa tatcatgatc aaaaaatgat tttgacagcc gcttactgcg      3660
     aatatcataa aaaaatgtcg acaattaaca acactg                                3696
//
ID   AGM1        repbase; DNA   ; ANG   ; 5983 BP.
XX
AC   AF060859;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Anopheles gambiae Moose LTR retrotransposon, complete sequence.
XX
KW   LTR Retrotransposon; Interspersed Repeat; AGM1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-5983
RA   Biessmann H., Walter F.M., Chuan S., Le D., Yao G.J.;
RT   "Moose, a novel family of LTR retrotransposons in the mosquito
RT   Anopheles gambiae.";
RL   Insect Mol. Biol (1998)In press.
XX
RN   [2]
RP   1-5983
RA   Biessmann H., Walter F.M., Chuan S., Le D., Yao G.J.;
RT   "AGM1.";
RL   Direct Submission to Repbase Update (21-APR-1998)Developmental
RL   Biology Center, University of California, Irvine, CA 92697, USA.
XX
RN   [3]
RP   1-5983
RA   Biessmann H., Walter F.M., Chuan S., Le D., Yao G.J.;
RT   "AGM1.";
RL   Direct Submission to Repbase Update (29-JUL-1998)Developmental
RL   Biology Center, University of California, Irvine, CA 92697, USA.
XX
DR   GenBank; AF060859; Positions       1    5983.
XX
SQ   Sequence 5983 BP; 1808 A; 1152 C; 1427 G; 1596 T; 0 other;
     tcgttgctaa ccaaaaccat ccaacgaaaa acacattcaa attgttcgat ctcaaatgca        60
     tgcggttcta ccacagtgcc ggattatggc agctgacgtt ttgtcattct tgtgggtcta       120
     gggacgtacc gctgtgaaag gggaaccgcc tttttgtggc aattgtcacg agccgaagaa       180
     aagcgaagca cgcataaatg gtgtgtgaat aaagaagtga acttacttgc caacaaagaa       240
     caaccgactg attatttcgt gtaaaaaaaa agtaaaaata tcacaacgta gggactttca       300
     cggaacattt tggtgcaagt gaccaggata agtgcctgat tatcggtgtc aattgtggta       360
     atcataatta gtgcaaaagt tctcgcttgt tctttgctgt gtgcgtgtga gtgtgtgctt       420
     ggagctggct aggattttgt gtgcgtgtgc gcgtgtgcaa cgtattaaac agtgtgttta       480
     acgcaagtgt aacaatggcg acggcgcgag aagacaaaat tcgtggcaaa gagcaaaaaa       540
     gaaaaaacat tatagattcg atgcggcgaa tcgatttatt cgtacaaacg tacactgtgg       600
     acaagattca tgaggtgacc acaaggctcg agaggctcga gaaagtgtgg tatggttttg       660
     aagaagttca agaagagtta gacaagctaa cccttgaggg agacaacgct gaaaatgaaa       720
     agacgcgtgc agaaatggag gagctataca tgagtgttag atccaatcgc tacggctgaa       780
     gccatcgtct aatccaatag tcagcgacgt taaaccggta cccattgtgt cccaaatgaa       840
     attaccagta atacaattgc ctgagtttgg aggtgatttt aatgattggt taccatttca       900
     tgacacgttt gtgtccctga ttgataaatc agatgagctt tctggtgtgc aaaagctaca       960
     ttatttgaaa gctgcgctca aaggtgaggc agcacggcta atgagccaat tctcactaca      1020
     gatgagaatt acaaaatgca tggcaaatgt tggtagaccg ctatggcata aacatttgct      1080
     taagaaacgt catatccaag ccattttgag gctaccgaag attatcaata gcaatctaga      1140
     tttattgcga cgcactgtag atgatttcca gcgacacaca ttggtgttag aacaactcgg      1200
     tgaaccaata aaacatctta gctcattcct tgttgagctt cttagtgaga aattggatag      1260
     tgcttctctt gcggcgaggg aagaagcaca agcggataaa agttacacat acagtgacat      1320
     ggttgagttt ctgcgtaagc gtgtgcgttt gttggaaacg cttgctaacg atacgggtga      1380
     aacgagtaag cgacaaccgc gtgtaaaagt gagtgtgaac actgctgcag cggccgagaa      1440
     aaaagtggat atgtgtgttg tgtgtggaaa gcaggggcat acaatagtga attgtcggcg      1500
     tttcaatgaa ttcgatgcaa agaagcgcca cgaagttgtg aggcagcaca aattgtgttg      1560
     gaattgcttg cagggcagcc attttgtaac cagttgtacg tcaaggtatg ggtgtcaaac      1620
     gtgtggcaaa cggcatcata ccttgctgca tgctgaacga agtagtagtg taatagcaga      1680
     tgattcggtg ggttctgtta gtacgatggt gcttgctaat attccaatgc agtgcaactc      1740
     tactgaccga agctcatatt ctaatgttat gctgacaacg gtggtgttgt ttgtagttga      1800
     cgcaaatggt acgcaacatc cagtacgtgc gttgttggat aacggtgcgc agcccaatgc      1860
     gataagtgag cgattgagtc agcttttgtg cttgcgcgta tgcgtaccca tgtatccatt      1920
     acaggtgtgg atggaacgac gactcaggcg tcatgtgaaa tgaaggtgga aatccgttcc      1980
     agatttacgc aatttgctct gaaactaaat ttcttggttt tgagcaaggt aacagcaaac      2040
     actccagcca catctttctc cacatcatgt tggaaattac ctgctgggtt ggcgctcgca      2100
     gacccagaat tccatcagtc tggacgagtg gatatgctaa tcggtgcatc gcatttctac      2160
     acgtttctga gggaaggccg gctcaaactt agtgaacatg gtccattgtt agttgaaaca      2220
     gtgttcggtt gggtggtaac aggtgaagtg ctccgagaag aagctataat tcagcaacaa      2280
     gcagctcagt gtcatgttat gttatcgtcg gaaaacatta gcgatcaact tgagcggttt      2340
     tggaagatcg aagagctgca tgtttcgcat ttctcggcgg atgagcagag atgcgaagct      2400
     tattatgagc aaacggtatc acgagacgaa acaggcagat atatcgtgaa actgcctaaa      2460
     catcagcaac attctaccat gattggaaaa tcagaaacga catcacttaa gaggtttgct      2520
     ggattagaac gtaagttatt tgctaactca caacttcgtc agcagtacaa tgagtttatg      2580
     ttggagtaca tacaactcgg tcatatggtt cctgtgtcgc ctgacaacct ggatgcagca      2640
     acctgctgct accttccaca tcaccctgtg tttaaggaga caagttccac gactaaaatg      2700
     agagtggtat ttgatgggtc agcaccaact agcacaggac actctctgaa tgatgcgcta      2760
     ttggttggac cagtcatcca agatgatctt ttgagcttaa taatccgttt tcgtaaattt      2820
     caggtcgcgc tagttccgga cttggaaaaa atgtatcgtc aggtacttgt gcatccggag      2880
     gatcgaccgt tacagagata tggtggggcg tatgagttgc ggacagtaac atacggtttg      2940
     gctccttcat ctttcttagc tacaagaaca cttcagcagt tggctgaaga tgagggtgac      3000
     gcgtttccta ctgccaagga tacgctgaaa aaacaactgt acatggatga ccttattgct      3060
     gggtcaaata gtgttgatgg agctatacag ctacgtgagg aattgagtgc actggcgcag      3120
     agaggcggtt ttacttttcg aaaatggtgt tcgaattcat tagccgtttt atctgacgtt      3180
     cccgctgaac aattggcaac aaaatcatcg ttaaggttcg acgacaagga gacaattagt      3240
     acgcttggta tatgttggga accagaaatt gatacgttcc agttcaacat ttctattact      3300
     acgaaatcag agagagacac catgcgtacg atactatcaa tgattgctga actgtatgat      3360
     ccattgggat tgatttcacc tgtaattatt acagccaaag ttttgatgca atcgctctgg      3420
     cgtttgaagt tgagttggga tgatacggtg cctgaggaac ttcaaaggaa ttggattaga      3480
     tttcgagcag aattaccaga acttaaagat tttagtatcc ctagattcgc tttcgctcat      3540
     caatatcggc aagcagaaat acattgtttc acagacgcgt cagagcttgc atatggcgcg      3600
     tgcatctata ttcggtctga agctgaggat ggaagcattc atgttaattt gctagcatca      3660
     aaatcgagag tggctccact gaaggcattg acgattccta gacttgaact ttgcggtgca      3720
     ttattaggag ctcgattgca tgagaaggta atggctgcaa tggagattaa gttcgttgct      3780
     catcgatttt ggaccgattc taccgtggtg ctagattggc taaatgctga atcaaagact      3840
     tggaaaacat tcgtagcaaa ccgagttgct gagatccaag caattcgaga tgctgtttgg      3900
     caacatgtat ctggacaaga aaatccagct gaccttattt cacgcggagt tttaccgcat      3960
     cagctcatca acaatcaatt gtggaaacaa ggtccacaat ggttatcaga gagaaaggag      4020
     aattggcccc aacaaaaaga gagaacaggt caaattacaa cagacgaaat aagatcgaat      4080
     gtcgttttaa caacgcaaat acaagaaaaa aatgaaatat ttacaagata tgggtcatac      4140
     cagaagctaa tcgacgtggt tgcatattgt tttcgttttg ttcataatgc tcgtcgtctg      4200
     caatcaagaa taagcaatag tgcattgacg gtaaaggaac ttgctgatgc taaaaagcga      4260
     cttgtaaaac ttgtgcaagc tgaagaattt accaacgatc tttataaaat ccacaagggg      4320
     attcctgttg ctcgaaattc aacgttgaag cttttaaacc cgtttataga taatgaagga      4380
     ataatccgcg taggtggccg gctcagaaat tctgatttga attataatat taagcatcaa      4440
     atagttcttc ctggattcca tccatttact caactcctca tcatggacaa acatgtaaaa      4500
     gcaatgcatg gaggaatatc atcaactctt aacgcagtta gagatgagat ttggccaatc      4560
     aatggaaaaa gagctgtacg taaggtcata cgaaattgtt ttcgatgttg cagagcaaat      4620
     ccacaaccta taattcaacc tgaagggcaa ctaccagcag aacgtgttac agttaacgag      4680
     gtgttcagtt gtacgggtct agattattgt ggacctttgt atttgaggcc aacacaccgc      4740
     aaggccgcac caaataagtg ctacatttgt gtatttgtct gcatgagtac gaaagcagta      4800
     catttggaat tagtcggaga tttgagcaca aattcgtttc tgatggcact tgatcgcttt      4860
     gtttatcggc ggggtaaacc aaagcacatt tattcagaca atggtaccaa ttttattggt      4920
     gccaaaaatg aacttcatca gatctacaaa atgctgttca acgattctgc agatagcaaa      4980
     atagcaaaac atttggcaaa agaagagata caatggcatt tgataccccc acgcgcccca      5040
     aatttcggag gcctttggga agcggcggtg aaggtagcca aaacccattt gattcgtcaa      5100
     ctaggatcat cgcgtttatc atcggaggaa atgactactg ttttagtaaa aatagaaggt      5160
     tgcatgaact cgcgaccatt agttccgctt tctgaagatc ccaatgattt gacggcatta      5220
     actccagcgc actttcacat tacaaacaat ttgaaggtta ttctcgaacc tgacttgaaa      5280
     gaggtgccta tgaatcgtct gggaagatac caactccttc acgggtacac gcaaaacttc      5340
     tggatacact ggaaacagga ttatctgaaa aatcttactg ttttgcatcg gtcagctaag      5400
     caatctaagc aattatctgt cggagatata gttattctga aggatgagca gcttccagca      5460
     gttcaatggc cattggcacg tgtcgtcgaa atacaccctg gagctgatgg aatttcccga      5520
     gttgcaacac ttcgtacggc atccggtatt gtgaagcgag cagtatctaa aatctgtccg      5580
     ttacaatgca gtaatcaaag aatggattga aaactgagtg tttcaaggtg gccggtatgt      5640
     tcgatctcaa atgacctgcg gttctaccac agtgccggat tatggcagct gacgttttgt      5700
     cattcttgtg ggtctaggga gctaccgctg tgaaagggga accgcctttt tgtggcactt      5760
     gtcacgagcc gaagaaaagc gacgacgcat aaatggtgtg tgaataaaga agtgaactta      5820
     cttgccaaca aagaacaacc gactgattat ttcgtgtaaa aaaaaagtaa aaatatcaca      5880
     acgtagggac tttcacggaa cacaaattaa ccagcaatca aatcaggtga gacagaaaac      5940
     ctaccatgca ataaatgctt agcacacaca aaccgtagac agg                        5983
//
ID   BEL16-I_AG  repbase; DNA   ; ANG   ; 5510 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL16-I_AG is an internal portion of the BEL16_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; integrase; 5-bp TSD;
KW   Bel clade; RING Zn-finger; peptidase; BEL16-I_AG; BEL16-LTR_AG;
KW   BEL16_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5510
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A., Jurka J.;
RT   "BEL16_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 39-39 (2003).
XX
CC   [1] (Consensus)
XX
CC   BEL16_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL16-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL16-LTR_AG
CC   LTRs. The BEL16-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 18 copies; they are ~1% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1736-aa BEL16_AGp Bel-like
CC   protein
CC   (pos. 231-5438).
CC   BEL16_AGp is composed of the peptidase A16 (pos. 145-304), RING
CC   Zn-finger (pos. 335-400), reverse transcriptase and
CC   integrase domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="BEL16_AGp"
FT                 /translation="MSVSEDFAGFSDASGSNNTMQYTQAEDLDMIILKRER
FT                 DRVVQSLTRIDTFLAQYKESDFPELTPRLDLLNERWREFQALARNIGAKDY
FT                 SEDNDVLYGEIEDKVMLLKGKLLGKLRAGAEIPSVKQERVCDDYNSVRLPQ
FT                 LTLPQFSGKYDEWLPYHDMFVVTVHENEKLSQVEKMLYLKGSLKGEALKVV
FT                 DTLQACNSNYDVAWDALKKRYSNEYILKKRHVNAMLQWPRMKVMNTVGIHG
FT                 LIDCFERNLQILKQLGEVTEQWGCLIIQIIISKLDESTQQKWERHVEESEQ
FT                 KTVTDLLNFLRTQTRIMDAFAVDRPMAAGKSTSERRVASNVAAEAKCAKCD
FT                 GSHMVENCDSFRSLTLPRRREVVEAKKLCLNCLRQGHFQAKCWSRARCNIC
FT                 NRKHHSLLHGENVSETIGPSVREELPSTSGTQNVVVNASSNRECTSVLLST
FT                 AIVSVRACGNKWLSARALIDSGSQVNLMTKGLAARLKLPQYESKTALSGVG
FT                 HSKVDITTSVTTVIRSKSCNYQERMQFLVLPRISSYRPVTGNQISRQNLPM
FT                 NFVLADPNFDSDAEVDLLLGSEFYATFLKPDNRGKIRLELPALPTFISTVF
FT                 GWVATGKVPLASEGSNYVTCGTCTRLDDLIERFWIIEEIREPLQHSQEERD
FT                 CEAHFVQTHQRDSEGRYIVKLPFKCDLQNQLGPSSAIARKRFLQLERRFNR
FT                 DPWLKQKYTAVINDYIDKGILVKVAANPDSEEAHGHYFLPHHPVIKASSTS
FT                 TKVRPVFDGSASTDGGKSLNDLLMTGPVIQENLLALLLKFRMRSVALVADI
FT                 KQMYLQVKVHPDDTRFQRVLWRGSSVESIEVYELQRVTFGLAPSSFLAIRV
FT                 LQQLAIDEGENFPLARQALLEDFYVDDYIGGASSEEEAVRLQAELTLLLRK
FT                 GGFHLTKWNSNKPDVLSSVSAEDRATSNVKMFEVPEEPIKTLGIAWLPESD
FT                 QLYIDSNIQMNNESWSRRKVYSLVARIYDPLGLVAPVTSWAKINMQSLWLA
FT                 TDDWDEEIPAVMQERWYAFQSQLGLLKEVKFSRHAVVHNPVAVQLHCFSDA
FT                 SEAAYGACVYVRTIGSSGEVVVELLAAKSRPAPLKRVSLARLELCGALLAA
FT                 RLQKVVRQALRIPDVETFMWTDATIVLHWIRAPSHSWATYVANRVSEIQEL
FT                 THGYKWMHVKGVDNPADIVSRGAMPNELLASKLWFHGPGWLQLSEEEWKKN
FT                 ASGVLAIPEEELLERRKSSLVAAVSSESDDWCDRFSNYDKLLRITAYCMRF
FT                 IRCCQRKLDPKHKGVLLVSELAEAKIRLVKREQRIYFAAEIKELSAGQTVR
FT                 PKSSLKTLGAFLDGDGLLRVGGRLHRAKAMQVCSRFPLALPKKSRFTRLMA
FT                 EYYHRLALHGGPTATLSALRREFWPIQGRSLVNSVCRGCLVCFRMNPALVQ
FT                 QPPGQLPVSRAMPARPFSIVGVDFCGPIYLKPVHRRAAAEKAYISIFVCFS
FT                 VKAVHIELVESLSTHAFLAAFRRFVARRGLPSEVYSDNGLNFQGASKVIDD
FT                 FYTLMNSDSAVEDISRYAVGAGVKWHFIPPHAPNFGGLWEAAVKAAKRVLL
FT                 KVVGDRQLAFGEMSTVLAQVEAQLNSRPLTPLSEDPEELDVLTPGHFLIGA
FT                 PMNALPEPDVGDVPINRLKRYEELRRVVQNHWARWRREYFSELHNEHQRGK
FT                 AVVELKVGQMVLLKEDGKTPHHWPMGRIAEVFPGPDGVVRVVSIRTRNGLY
FT                 KRPANRISLLPFERVN"
XX
SQ   Sequence 5510 BP; 1469 A; 1034 C; 1539 G; 1468 T; 0 other;
     ttggtgccgt gaccaggatg gtctaatatt tgcggtttgg tttgactggt taaagtgaag        60
     aactttgtgt gatttctttt ggcaaaaatc gcgtaacgcg tgtgaaatct gaaagttccg       120
     tatcgagcgt tggtggattt ctgaataaga aaaaatcgcg aaagcgtgag aaatcattgt       180
     gctagtgggt gttctttgcg tgtgtatgca ttttgtgtcg cgtattagaa atgtcggtta       240
     gtgaagattt tgccggtttt tctgacgcgt cgggttcgaa caatacaatg caatacacac       300
     aagcagaaga tctggatatg attatcctaa agcgcgagcg cgaccgagtc gtgcaatcgt       360
     tgacaagaat cgacacgttt ttggcgcagt acaaagagag tgatttccca gaattgacgc       420
     ctcgtctcga tctattgaac gagcgttgga gggagtttca ggctttggct cgaaatattg       480
     gcgcaaaaga ttacagtgaa gataacgatg tgctttatgg tgagattgaa gacaaagtca       540
     tgctattgaa aggaaaatta ttgggaaagc tgcgggctgg agcggagata ccgagtgtga       600
     aacaggaacg cgtgtgcgat gattataata gtgttcgttt gcctcagttg acgcttcctc       660
     aattttccgg aaaatatgac gaatggctcc cgtatcacga catgtttgtt gttactgttc       720
     atgagaacga gaaattgtcg caggttgaaa agatgcttta tttgaagggt tctctgaaag       780
     gtgaagcgct gaaggtggtg gatactttgc aagcctgcaa ttcgaattat gacgtagctt       840
     gggatgcttt gaaaaagcga tattctaacg aatatatttt gaaaaagcgt catgttaacg       900
     cgatgctaca atggccacgg atgaaagtca tgaacacggt gggtattcat gggcttatcg       960
     attgtttcga aaggaactta caaattctaa agcagttagg tgaagtgacc gaacagtggg      1020
     gatgtttgat tattcagata atcatttcaa agttggacga aagcacccaa caaaagtggg      1080
     aaaggcacgt tgaagaaagt gagcaaaaaa cggtgacgga tttgttaaac tttttgcgca      1140
     cacagacgcg cataatggac gcgtttgcag tggataggcc aatggcggcg ggcaaatcta      1200
     caagtgaacg tcgtgttgcg tctaatgtgg ctgcagaagc aaagtgcgca aaatgtgatg      1260
     gatcgcacat ggtggaaaat tgtgactcgt ttcggagttt aacgttgccg cgtcgtcgtg      1320
     aagtggttga agctaagaag ctttgcctta attgtttgag gcaagggcat tttcaagcca      1380
     agtgttggtc acgtgcgcga tgcaatattt gcaatcgtaa acatcattcc cttctacacg      1440
     gtgaaaatgt aagtgaaacg atcggtccgt cggttcgtga agaacttcca tctaccagtg      1500
     gcacgcaaaa tgtggtggtg aacgcgtcat cgaacagaga gtgcacttct gtgttattat      1560
     caacggcgat agtgagtgtg cgtgcgtgtg gtaacaaatg gttgtcagca agagcattga      1620
     tcgatagtgg gtctcaggtg aacctgatga caaagggctt ggctgcgcgg cttaagttac      1680
     cgcagtacga aagtaaaacg gcattatcgg gagttggaca ttcgaaagtg gacataacga      1740
     cgtcggtaac gactgtcata cgttccaaaa gttgtaacta tcaagaacgt atgcagtttc      1800
     tagtgttgcc gagaatttct agctacaggc cggtaactgg aaatcaaatt agcaggcaga      1860
     atctcccgat gaattttgtg ctcgcggatc ctaatttcga tagtgatgct gaagtggatt      1920
     tattgttggg ctccgaattt tacgcgactt ttttgaaacc ggacaaccgt ggtaaaatta      1980
     ggctcgagct accagcgctc ccaacattta ttagcactgt ttttggatgg gttgcaactg      2040
     ggaaagttcc gctggcttct gaaggtagca attatgttac ttgtggcacg tgtactaggt      2100
     tggacgattt aattgagcgt ttttggatta ttgaagaaat acgtgagccg cttcaacata      2160
     gtcaggaaga aagggattgc gaagcacatt ttgtgcaaac tcatcagcgg gatagtgaag      2220
     ggagatatat agtgaagctg ccatttaagt gtgacttaca gaaccaattg ggaccgtcca      2280
     gtgcgatagc gagaaaacgg ttcttgcagt tagaacgacg tttcaatcgg gacccatggt      2340
     tgaaacaaaa gtatacggcg gttatcaacg actacatcga caaagggatt ttagtcaagg      2400
     tggctgcgaa ccctgattct gaggaagcgc atggtcatta tttcttaccg catcatccgg      2460
     taatcaaggc gtccagtacc agtacaaagg tacgacctgt gtttgatgga tcggcctcta      2520
     ccgacggtgg taagtctctt aatgatttgt taatgactgg tcctgtgatt caggagaact      2580
     tgttggcgtt gttgctgaaa tttcggatga ggagcgtggc attagtggca gacataaaac      2640
     agatgtatct gcaagtcaag gtgcatcccg acgacactcg ttttcaacgt gtattatggc      2700
     gaggctcatc tgttgagtcc atcgaagtct acgagttgca gcgggtcaca tttggacttg      2760
     ccccgtcttc ctttctggcc attcgagtac tgcagcaatt ggcaattgat gaaggggaaa      2820
     actttccctt ggcgagacag gcgttgttag aggacttcta tgtcgatgac tacattggtg      2880
     gtgcctctag cgaagaagaa gcagttaggt tgcaagctga gctgacgcta ttgttgagaa      2940
     agggcggatt tcatctaact aaatggaatt ctaacaaacc agatgtttta tctagcgttt      3000
     cagcggaaga cagagcaaca tccaacgtta aaatgtttga agttccagag gagccaataa      3060
     aaactctagg tatcgcgtgg ctaccagaat cggaccaact gtacatagac tcgaacattc      3120
     agatgaacaa cgagagctgg tcccgtagaa aggtttactc tttggtagca cgtatatacg      3180
     accctttggg gctggtggct cctgtgacat cttgggccaa gataaatatg caatcgttgt      3240
     ggttggcaac tgatgactgg gatgaagaaa taccggctgt catgcaagaa cgatggtatg      3300
     cttttcaatc acaactcggg ttgctgaagg aggttaagtt ttcgcgccat gctgttgtgc      3360
     ataatcctgt tgctgttcaa ctacattgct tttcggatgc atctgaagcg gcttatgggg      3420
     catgcgtgta tgttagaacg attggtagca gcggggaagt ggtagttgag ttgcttgctg      3480
     caaagtctcg tcctgcgccg ctgaaaagag tcagtttggc ccggttagaa ctttgtggag      3540
     cattactggc agcaaggttg cagaaagtgg tacgccaagc gttgagaatt ccagacgtgg      3600
     aaacctttat gtggactgat gcgacaatcg tgttgcattg gattcgagca ccatcccatt      3660
     cttgggctac gtacgtagcg aatagggtat ccgaaattca ggaattgacg catggctaca      3720
     aatggatgca cgtgaagggc gttgacaatc ctgccgatat tgtatcgcgt ggagctatgc      3780
     cgaacgagct gttagcatcg aagctgtggt tccatggtcc cgggtggtta caactatcag      3840
     aggaagaatg gaagaagaat gccagcggtg tgttggcaat tcccgaagag gagttattgg      3900
     aacgaaggaa gagctcattg gtggccgcag taagtagcga gagcgatgat tggtgtgata      3960
     ggttttccaa ctatgacaaa ttactgcgga tcactgcgta ttgtatgaga tttattcgtt      4020
     gttgccaacg aaagctggat cctaaacaca aaggtgtttt gttggtgagc gagctagcag      4080
     aggcgaaaat tcgactggtg aaaagagaac aacggatata ctttgcggct gagatcaagg      4140
     agttgtctgc tggacaaacg gtacgtccca aatcatcact gaagacatta ggagcttttt      4200
     tggacggtga tggtttgctc cgagttggtg gccgcttgca tcgcgctaaa gccatgcaag      4260
     tttgtagcag atttccgttg gcgctaccca agaagtcacg atttactagg ctaatggcag      4320
     aatattatca tcgattggca cttcatggtg ggccaactgc aacattgagc gcactcagga      4380
     gagaattttg gccaattcaa ggacgatctt tggtcaatag tgtttgcaga ggctgtctgg      4440
     tatgcttcag gatgaatccc gcgttagttc aacaaccacc aggacagcta cccgtgtcgc      4500
     gtgctatgcc agctcgacca ttttcgatcg taggggttga tttctgtgga cccatttact      4560
     tgaagccggt gcatcgccga gcagcagctg aaaaagcata tatttcaatc tttgtgtgtt      4620
     tttcagtaaa ggctgttcac atcgagcttg tggagtctct atcaactcat gcatttctag      4680
     cggcgtttcg tcggtttgtg gcaagacggg gtttgcccag cgaggtctat tccgacaacg      4740
     gtctcaactt ccaaggagcg agtaaggtga tcgatgactt ctacacgttg atgaacagcg      4800
     attcggcggt ggaggatata tcgaggtatg ctgttggcgc tggcgttaag tggcacttca      4860
     tcccacccca tgcaccgaac tttggcggcc tttgggaggc agcggtaaaa gcggcaaaac      4920
     gcgtcctact gaaggttgtt ggtgatcggc agctggcgtt tggggagatg tcgacggtac      4980
     tggcacaagt ggaagctcaa ctcaacagca gaccgcttac accgttgtcg gaggatccgg      5040
     aagaacttga tgtattgacg ccggggcatt ttctaatcgg ggctccgatg aacgctctac      5100
     cggagcctga cgtgggtgat gtaccaatca atagattgaa gcggtatgag gaattgcgta      5160
     gagtggtaca gaatcattgg gcgcgttggc gtagggaata ttttagcgaa ctacataacg      5220
     aacatcaacg cggcaaggca gtagtagagc taaaggtagg acaaatggtc ctgttgaaag      5280
     aggatgggaa gactcctcac cattggccaa tgggacggat tgctgaggta tttcctggcc      5340
     cagatggcgt agtgagagtc gttagtatca ggactaggaa cggcttgtat aagaggccag      5400
     cgaataggat tagtcttctt ccgtttgaga gagtgaatta gatatcataa agtcaggcat      5460
     tttgtgaagt aatggaaaga ggtaaatttg gtaaatttag gtggccgcta                 5510
//
ID   AGRP1       repbase; DNA   ; ANG   ; 871 BP.
XX
AC   L11898;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   Mosquito repetitive sequence.
XX
KW   Repetitive sequence; AGRP1.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-871
RA   Reiss A.R.;
RT   "A study of repetitive DNA elements in the malaria vector,
RT   Anopheles gambiae.";
RL   Thesis (1991).
XX
RN   [2]
RP   1-871
RA   Reiss A.R., MacIntyre J.R., Hagedorn H.H.;
RT   "A repetitive element of the Malaria vector, Anopheles gambiae.";
RL   Unpublished (1993).
XX
DR   GenBank; L11898; Positions       1     871.
XX
SQ   Sequence 871 BP; 263 A; 209 C; 213 G; 186 T; 0 other;
     ctcgagcaaa ccagagaggc gtacggaccg acacgaaagt tttaccaagc gatacgaggt        60
     caccgaaaca acgttgtacc taaggtaacc tgctgtcgca acaaggatga agatctggtt       120
     agtaaccatc cagaggtcct cttgcgatgg gctcagtact ttgatgaatt actcaacgac       180
     tagttcaacg agcagctaga agcgcactag ccgatagtgt catgcactgc cacctagagg       240
     aaacacaaag gcataccgtc ggctgaaaaa tccaccggca cccggaaccg accggaattg       300
     cagcgaactg gtcaagaatg gaggtgcacg acgtagaaaa cgaagtaatc atcattactg       360
     aggtgtggga tagcgaatcg atgccttgtg actggatctc ggcatcatgt accccatata       420
     caagaaggga gacaggttgg actgcaacta caggggtatt acgatgttga ttaccgcgta       480
     taaaatattc tccctgatcc ttcagtatcg ccttgtcccg cacgtcgaag agatagtagg       540
     aaactatcaa agaggattcc gaaacggaaa atctaccatt gatcagatct tcaccatgcg       600
     acagatcttg gagaagatgg ctgaatacag acacgacaca taccaactct tcattgactt       660
     caaagtcgca tatgatagca tagcctgggt aaaactatac gacgctatga gctcatttgg       720
     aatcccggcc aaactgataa ggctagttag aatgactatg accaacgtca catgccaggt       780
     gagggtggat ggaaaactct caggaccttt ttgccaggct tgcctgtctc ctattcaacc       840
     tggcgctaga gagggccatc cgcgactcga g                                      871
//
ID   CR1-1a_AG   repbase; DNA   ; ANG   ; 5247 BP.
XX
AC   .
XX
DT   12-MAR-2003 (Rel. 8.02, Created)
DT   12-MAR-2003 (Rel. 8.02, Last updated, Version 1)
XX
DE   CR1-1a_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   Non-LTR retrotransposon; reverse transcriptase; CR1 clade;
KW   endonuclease; DNA/RNA-binding; CR1-1_AG; CR1-1a_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5247
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-1a_AG, a subfamily of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(2), 13-13 (2003).
XX
CC   [1] (Consensus)
XX
CC   CR1-1a_AG is a subfamily of CR1-1_AG non-LTR retrotransposons.
CC   The CR1-1a_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~10 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-1a_AG occurred less than 1 million years ago.
CC   The CR1-1a_AG and CR1-1_AG consensus sequences are 79% identical
CC   to each other. The 3' terminus of CR1-1a_AG is composed of the
CC   CAT
CC   microsatellite.
CC   CR1-1a_AG encodes two proteins: a 444-aa CR1-1a_AG-ORF1p
CC   (positions 441-1772) and 932-aa CR1-1a_AG-ORF2p (positions
CC   1776-4571). CR1-1a_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (positions 3-38) and gag-like zinc knuckle
CC   regions (aa positions 340-444). CR1-1a_AG-ORF2p is composed of
CC   the AP endonuclease and reverse transcriptase domains.
XX
SQ   Sequence 5247 BP; 1575 A; 847 C; 1255 G; 1570 T; 0 other;
     tcaacccttg aggtgaatgg tgacaagtgc agtcctgtga atgtgtagct cccgtttgtg        60
     aactgtgaaa acttgtgaaa tagagagcta agtgttattt tgttttgttc tacttgttac       120
     ttaatgttag tgctacctgc ggtatcattg tttagtattt gtattattgt tttgtgaatg       180
     taaaacacgg gtgaagtatc tcggtcgaca gcgtcactgc gttgtcgaaa gtgattaatc       240
     tttgctcggt atgtgtttgt gttcgtgcta gacatacgta tcgttgtccg tttgtcaaga       300
     cgtgtacacg agtgtaagcg tttgatatcg caggctgtag tagagtagtg tttgtgtgca       360
     tttgctgtta cctttttttc atgtctgtgt gataattttt ttaattctaa aacagctcgc       420
     ccgaattttg tttttacggc atggagtgtt tagcatgctc cgccgtagtt ttaataaacg       480
     atgacccaat tttgtgtgcg gggaaatgtg gtggcaactt tcatcgtcgc tgtgttaccc       540
     cctcgctctc gaaaacagcg gccaaaataa ttaatgagaa taagaatgtg ctgtatatgt       600
     gtgatagatg tttagaacac aaatcgggct tggcgggtat ggatgtagat gtgagtggat       660
     cgtacgattt actcacacaa tccataaaaa atttggagtc gaatgtgagt gtatggatat       720
     cgagtgcctt ggaaaaggga atcgagactc taaaaactga gctctgcgca caagtggaac       780
     gcaaattgga gcaaacattg cgtgaaagct tgagtgcggt agaatgctca aataaggcaa       840
     aggaagcctt gcgtgcaacc tttgacgata ctaaggccag agaaacagta gaggatgaaa       900
     gttgggctac agtgactaag aaaagaaaaa ggacgaatag tgggaacagt aatgttcaaa       960
     ccattattaa tcgttttgac acggggaatg ttaattcgac gcccaagatt tctgacaagg      1020
     ttactggacc cattttagca aacaaaaata agaatagtaa gactctggtt attgtaccaa      1080
     aggtgggtca atcttgtgat aagacaagag ctgaccttcg cgctaagctg gatccaagga      1140
     agcagcaggt gtcggaattc cgtaacggca aggacggtca ggtgtttgtt caatgttctg      1200
     ctcaggttaa attagatgaa ctcaggaaag aagtagaaaa cattttggga gatgagtatg      1260
     caacggattt accattgtca cgtgtaaaga taattgggat gagcgaaaaa tacactgact      1320
     cacatttagt agatctttta aaatctcaaa atgagggaat accctggaaa caggtcaagg      1380
     tcataggaat gtttgaaaat aaaatttaca agtaccaaaa atataatgcg gtcttggaaa      1440
     ttgattatga gtctgaccta tgtctggcaa aattaggaaa aataaatgtg ggatttgata      1500
     ggtgtaaaat ttcgaagtcc gtgcatgtta tgaggtgtta tggttgtggt caatttaatc      1560
     acaagagcac cgagtgcaag aataagcaag cttgttcaaa atgtggtgat gaacacaaaa      1620
     cgtccgaatg tacttcatct tctttgaaat gtgtgaattg cgtgttagca aactctgtta      1680
     gaaaccttaa actagatgta agacatgcgg ccaatgatta taattgtccg atgtttaaaa      1740
     aacagataga aaggcgtatg caactttctc aatagcaggt aggggaggag ttaggacggt      1800
     tcagagagat tttatatttc aatgtagccg gtctttcgtc caactacgcc atgtttcgtg      1860
     agacagtaga gaaagttcaa ccgttgctgg tcttaatctc tgaaactcat gtgattgagg      1920
     aagaagcatt tcagcagttt catattaatg gttatagggt tgtgtcgtgt ttgtcccact      1980
     cacgtcatac aggaggtgta gctgtttatg ccaggagcga aattgtccta aaggtgattt      2040
     ttaatgaatc attggagggt aattggtttc ttggtgttgc agtttctaag ggaatgacag      2100
     caggcaatta cgggatattg tatcattcgc caagtgcaag tgactcaagg tttgttgaca      2160
     ttttggaaga atggttagat aggttcttga attttagcaa acttaacatt atcgtcggtg      2220
     atttcaatat tgactggtta aatgttgaaa aatctgcgaa gttgaaaagc ttaatggatt      2280
     cagtaaacat gaaacaaaaa gttaacgaat tcacacgaat tgctaggcag agcagaacat      2340
     tgatcgatca ggtttacagt agcacagact caatcaaggt cactactgat ccgttattaa      2400
     aaatatcgga tcatgaaaca cttgttttga atataaacgt gaaacgttgt gaaacgattc      2460
     aacgaaaatt taaatgctgg aataggtact cgaaatttgc tctttgcaat catgtgtcac      2520
     aaggtttaag gcaagaagca ccgagcttca acgaagctgc agacttgtta tggaacacat      2580
     tgaaaaaagc tatgggcacc ttggttgaag agaagacaat cttgtcaaga gagactagta      2640
     ggtggtatac tttggaactt agccgtgcga aacggaaaag agacgaagca taccaacatt      2700
     ttattagatc aaactcaggc tacgattgga ctgaatacac tagactaagg aatacataca      2760
     gcaggaatct caaaactact cgtagaaatt actttagtgg tgagatatct aagcataaag      2820
     gaaatagcaa ggagttgtgg aaagtgctta aaagtttact aaggccagag gaatcacgcg      2880
     tttctgttgt aaaatttgat gggttggtag aatcggaaga ttcaataata tgccagaaat      2940
     tcaatttgtt ttttgtaaac agtgttttag atataaatca aaacattgct gatgccagag      3000
     cgcctgattc tttgttttgt aatgatgctc caggaaacca attcaaattt cagaaaatta      3060
     caaaagagaa attaaaaact atttgtttca gcctgtccaa aacagcgggc atagggaatg      3120
     ttaactgtaa tactattcag gattgcttcc atgtggtagg agagtctctt cttatagtga      3180
     tcaatcagtc gctggaggag ggtatttttc cggagacttg gaaggaatca ttggtaatac      3240
     ctattcctaa agtgagcgga gctgccagtg cggaagagtt tcgtcccatc aatatgttgc      3300
     atgtactcga aaaggtgctg gaattggtgg ttaaggagca attggtccag tttctaactc      3360
     gaaatgacct gttgattagt gaacaatcag gatatcgaca gggacactct tgtgaaactg      3420
     ctttaaatct tgtactggcg aggtggaagg tgttgatgga tcgaaaggaa tcgatagttg      3480
     ccgttttctt ggatctaaaa cgagcatttg agactatatc aagaccgtta ttgctgcaga      3540
     ccttaaggcg ttttggtatt gtggggaaag agctcaattg gttcgaaaat tatttaaaag      3600
     acagaactca gagaacagtt tttggaaact ctatatcaga gcctatagaa aatacccttg      3660
     gagttccgca aggaagtgtt cttggaccaa ttttgtttat aatgtatatc aatgacatga      3720
     aacaggtttt gaagtcttgt gagatcaatc tttttgccga tgatactgtt ttgtttatct      3780
     cgcacaaaga catcaagcaa gcagagtctc tgattaattt cgatttaaac gctctggatg      3840
     gttggcttag gtacaaaaag ctagcattaa acgttaagaa gactagttac atggtaatga      3900
     ctgctggtgt attagacagt cccccatcca tcgtgataaa taaggaacca atcgaaagag      3960
     tccgtcaggt taaatatctg ggggttattt tagacgacag attgaagttc aacactcaca      4020
     tagactgggt catcgctaaa gtggcatcaa agtgtggggt tattagtagg ctggcaaaag      4080
     atctcgattt ttttgggata gttaacctct ataagtcact gatttcacca cattttgatt      4140
     tttgctcgtc gattctgttt cttggcaata agggacaaat taaaaggctt cagagattgc      4200
     aaaatcgtat tatgcggtta gctttagggt gtggccgacg tacgtcgtct tttgttatgc      4260
     tagatattct tcagtggatg tctgtagagc agaggattgt gtatcaaacc atgaccttta      4320
     tatttaaact tttggggggc cttttgccag ggtatttagg ggaacgcatt gttcgaggat      4380
     ctgatgttca tcggcactgt acacgcagag caaatgagcc gagggttccc aacttaattt      4440
     cacatggtgc cagaaactct ttgtttttca aggggattca attatacaac agattacccg      4500
     gagaaatcaa gaatgcgagt aacttgccag acttcaaacg taggtgtgcg gcatatgtta      4560
     aacaaactgt gtaatgtcat atttgtgtag aagtcctatg tcactatgtt atgtacaact      4620
     gcacttgtca tcatgagctt gatgatgatg ataagatttt tcttgatata tgaaaacaaa      4680
     ttagaaaaaa tatataagaa agagacaaca taagtttgag acacgcgcgc gtacaagtgg      4740
     acaatcggat ttagtttggg agagcttgct gtctgcatgt ctgggaggtc acagcgagat      4800
     tcactcattg atgattgtaa gtggccaatt ccagatacat taggttctcc tgcatcggaa      4860
     ggtagtgccc tggtgccatc gttggtacca gcggaactgg ccatatgcat gttgcagtgt      4920
     gccctgataa tttccaatac attaggttct gctgcttcgg aaggtagtgc cctggagccg      4980
     gtgtggcacc agtggaactg gccatatgca tgtcgcagtt atgtcctgat gtgttcgatg      5040
     gagttgaccc gttttttctt gatgaaacta cgtcggtcgt cttgggtgtg tgtatgactt      5100
     ggtggattct tttgaatgac gtccgatgcc accacttgct cgtaaatttt tattttattc      5160
     aaaaactacc ttagagtaat attatcgtaa agatacttcc gtccttctca aacctgtgtt      5220
     ggggtaagag gtgggactta tcatcat                                          5247
//
ID   RETRO25_AG_LTR repbase; DNA   ; ANG   ; 316 BP.
XX
AC   .
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO25_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; BEL; DIVER; RETRO25_AG_I;
KW   RETRO25_AG_LTR.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-316
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO25_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2(12), 8-8 (2002).
XX
CC   [1] (Consensus)
XX
CC   Related to BEL and DIVER from Drosophila melanogaster. 5 bp
CC   target site duplication.
XX
SQ   Sequence 316 BP; 89 A; 73 C; 60 G; 94 T; 0 other;
     tgttacggca agcgtaatgg taacgcgtca cccttagtac gcctagcgta aggtagaggg        60
     cgctttcaag aaatttacct acgtgtaaat tttacttaat cataattcta ttacgcagtg       120
     caaattgctg tagatcggta tcgtgcagct cgaattcccg caagtgcagc tcgaattacc       180
     gcaagtgcag ctcgaattcc cgaattctgc cgtatataag cgagtgtttt tcctgaataa       240
     atttagtcaa gttccagagt tcaaagcaac aacatcgtgt cttcatcatc ttcaaacttc       300
     ctcttcatca ttaaca                                                       316
//
ID   GYPSY6-LTR_AG repbase; DNA   ; ANG   ; 181 BP.
XX
AC   .
XX
DT   08-MAY-2003 (Rel. 8.04, Created)
DT   08-MAY-2003 (Rel. 8.04, Last updated, Version 1)
XX
DE   GYPSY6-LTR_AG is an LTR of the GYPSY6_AG LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; 4-bp TSD;
KW   GYPSY6-I_AG; GYPSY6-LTR_AG; GYPSY6_AG; Gyspy clade.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-181
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "GYPSY6_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(4), 82-82 (2003).
XX
CC   [1] (Consensus)
XX
CC   GYPSY6-LTR is a long terminal repeat of GYPSY6_AG (its internal
CC   portion is deposited as GYPSY6-I_AG).
XX
SQ   Sequence 181 BP; 76 A; 33 C; 31 G; 41 T; 0 other;
     tgtaaacaat ttaaaattag gttacttata cttatctcgg gtgcaataat ctaatctaca        60
     agaactgcaa taaaatagga atgacagcga gcagaacggc acttcctacg acacacgaag       120
     aaacgataga aagccctcgt gtacgaaaaa agcaacaatt gtaaaaataa agctgtttac       180
     a                                                                       181
//
ID   GYPSY7-I_AG repbase; DNA   ; ANG   ; 6534 BP.
XX
AC   .
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   16-JUN-2003 (Rel. 8.05, Last updated, Version 1)
XX
DE   GYPSY7-I_AG is an internal portion of the GYPSY7_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; gag;
KW   reverse transcriptase; env; integrase; protease; 4-bp TSD;
KW   Gypsy clade; GYPSY7-I_AG; GYPSY7-LTR_AG; GYPSY7_AG; Gypsy group.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-6534
RA   Kapitonov V.V., Jurka J.;
RT   "GYPSY7_AG, a family of LTR retrotransposons from African malaria
RT   mosquito.";
RL   Repbase Reports 3(5), 87-87 (2003).
XX
CC   [1] (Consensus)
XX
CC   GYPSY7_AG is a young family of gypsy-like LTR retrotransposons.
CC   GYPSY7_AG belongs to the Gypsy group of the Gypsy superfamily.
CC   GYPSY7-I_AG, an internal portion of GYPSY7_AG, is flanked by
CC   GYPSY7-LTR_AG LTRs. The GYPSY7-I_AG consensus sequence was
CC   reconstructed based on multiple alignment of 5 copies; they are
CC   ~0.4% divergent from the consensus sequence.
CC   The consensus sequence encodes the Gypsy7_AG1p 434-aa gag-like
CC   protein (pos. 507-1808), the 1061-aa Gypsy7_AG2p pol-like protein
CC   (pos. 1756-4939), composed of the protease, reverse transcriptase
CC   and integrase domains, and the Gypsy7_AG3p env protein (pos.4962-
CC   6506).
XX
FH   Key           Location/Qualifiers
FT   CDS           507..1808
FT                 /product="GYPSY7_AG1p"
FT                 /translation="MEALAGRIAALEARFSESNVTDDFQDPPLFFTKQDGS
FT                 AVDPESFEKIPGVVKDLPIFCGDPSELNSWINDVDGIIRLYQTISSHSLEK
FT                 QNKFHMICKFIRRKIRGEANDALVASNVGINWNMMRKTLITYYGEKRDLET
FT                 LDFQLMSVYQKGRTLEVYYDEVNRLLSLIANQIQTDDRFNHPEASKAMIGT
FT                 YNKKAIDAFIRGLDGDVYKFIRNYEPTSLAAAYSYCISFQNLECRKMLTKP
FT                 KHFNTPPSAPRNQIPLPTPHLPPRVFQHQQRPMTANNVRPHFAHHPPIQNF
FT                 AGNFTQRPVWNQPNQQRPIFQRTNFNQPNQMKNFTQQRNNFRQNGPEPMEI
FT                 DPSIRSHQVNYANRPNSSNIRPLKRQRAFNIEAVPRRELEPTSYEDNLYDD
FT                 DVESQASYERYMRNVEKQEKLNENSHYDEISREAELNFLG"
FT   CDS           1757..4939
FT                 /product="GYPSY7_AG2p"
FT                 /translation="KFSLRRNFSRSRIKFFRLKSALPYFIYHGKAGQQIKI
FT                 LIDTGSNKNFINPLHAKISHDVIKPFFVSSVGGDLLITKYSQAQIFAPYSD
FT                 VNVKFYHLQGLKSFDAIIGYDTIKEMGAFVDAKRDNLVLENFIIPLSLHPL
FT                 QEVNRIEIRDTHLNHQEKEKLHLFLNKFQDLFQPPDEKLPFTTKVEATIAT
FT                 NDTEPIYCKSYPYPLSLKQEVETQIKKLLNNGIIRPSRSPYNSPVWIVPKK
FT                 VDASNEKKYRLVIDYRKINLKTKSDRYPIPDTSTVLANLGNNKYFTTLDLA
FT                 SGFHQIRLAEKDIEKTAFSINNGKYEFLRLPFGLKNAPSIFQRVMDDVLRE
FT                 HIGKICHVYIDDIIVFGKTFDEHLKNLEIVLNTLREANFKIQPDKSEFLRT
FT                 EVEFLGFIVSEYGLKPNEKKIESILKYPEPQTIRELRSFLGLSGYYRRFVK
FT                 NYAALAKPLTKLLRGEDGQGHCKITKNQSKNFPIKLDDDAKRAFKTLKEVL
FT                 SSDDVLAYPDFDHDFILTTDASDKAIGAVLSQNVNGVEKPITFISRTLSKT
FT                 EENYATNEKEMLAIVWALHSLRNYIYGAKIIILTDHQPLTYAMSPKNNNAK
FT                 LKRWKAFIEEHNYELSYKPGKTNVVADALSRIQINSLTPTQHSAEEDDLSF
FT                 IPSTEAPINVFRNQLIFQKGTISSYEFVNPFPKFKRHTFIEPQFSIDFIKD
FT                 KLKRFMIPGIINGIFTDEPTMGIIQETFKNLFNISTMKARFSQTQVQDICD
FT                 QEQQIEEIRKIHNFAHRNAKENSLQAIKKFYFPSMRNKIEQYVKNCETCKV
FT                 EKYERRPPEYIPVKTPIPKYPGEIVHVDIFAYNANFLFISSMDKFSKYLKL
FT                 KPIKSKSIADVKEVLLQLLYDWNLPRQIIFDNECTFVSNVIEQSILNLGVS
FT                 IFKTPVNRSESNGQVERCHSTIREIARCTKGLNPDMSLITLIQQAVYKYNN
FT                 TIHSFTKETPRKVYIGEQSEELSFRDRSKLKEKIESKIIKIFEEKNEKIKD
FT                 DKYQDYEPNQFAYEKNKTMNKRDSRYKTVVVKENHPTYIIDSNNRKIHKIN
FT                 LRKN"
FT   CDS           4962..6506
FT                 /product="GYPSY7_AG3p"
FT                 /translation="LIFYYRIAFFTLYGVLQASINIFDLTNNPLAIVPLGQ
FT                 AKIRIGYLRTIHPIDLTELEEIISRVFENSTNSTGKSPLQSLINLKLEKLN
FT                 ATISKIRPRRLRTKRWNSIGTAWKWIAGSPDAEDLTIINTTLNSLILQNNE
FT                 QLLINNGLSRRFQETTNIANHVIDLQNRIQREHQTEIQQIIKIANLDALQA
FT                 HIKTLQEAILAAKHGIPNSELLSIEDLNTVAEFLAQNGIYYTSVEEMLTQA
FT                 TAQVTMNSTHVIFMLKFPRLSYETYEYNYIDSIIQNDKRILIKHNYIIRNL
FT                 THMFELPQPCIDQSSHQLCESKDLEEPSRCIRQLVQGEHTECMYEKVYSTG
FT                 LVKHINNANILLNDATAEISSNCSNINHILNGSYLIQFHNCNIFINGELFP
FT                 STEVSITGKPYISTLGLIAKEDGIRDEPSIEHLRNITLQHREKLHTISLVN
FT                 NSLTWKLHIFGSIGLTTIVLITIAILYFITSIRRTKISLNIPTNNTNRQDV
FT                 HHIETFVKKPTTFHALGRL"
XX
SQ   Sequence 6534 BP; 2503 A; 1267 C; 1070 G; 1694 T; 0 other;
     ggcgcccgaa tagggacctc tagtgaagtg aaaatcaagt gacgagtagt gatcgcgaaa        60
     gagcgtaatc acaccgtgct tagaacatct cccgatcgca gattgcagcc gtgtgtatga       120
     gcacctaagt agccggtagc agccaataac tcgttgccgg aggaaaggga caacgccgac       180
     acaccgagaa ggaaaaattc accggaggcc cgagcaacag aaaccaaccc cgtcagagga       240
     ggcgaagcaa ccagccccgt aagaagggtg aagcatgaat ttattaatgt aagtaaaact       300
     ttcaatcata gtaagtataa acatttatta aagcgacaaa aaatattaaa acattataat       360
     cagtgttaaa gtgagtgatt agtgagtgaa aagaaaatca ttatcacaaa agttaagtca       420
     aactggagga attagttcaa tcattacgac aattctcagt cacagtaaaa tctatagata       480
     acgaagaaaa actaacaaac aaagatatgg aggcactagc tggcagaatt gcagctttag       540
     aagcacgttt tagtgaaagc aatgttacag atgattttca agacccacca ctttttttta       600
     caaaacaaga tggtagtgca gtagatcccg aatctttcga aaaaatccct ggagttgtaa       660
     aagatctccc aattttctgc ggtgacccaa gtgaacttaa tagctggatc aatgacgtag       720
     atgggataat ccgactatac caaactatat ctagccatag tttggaaaag caaaataaat       780
     tccacatgat ttgtaaattc atacgtagaa aaattagagg tgaagccaac gatgctttag       840
     tagcatctaa cgtagggata aattggaata tgatgagaaa aactctcata acttattatg       900
     gagagaagcg agatttggaa actctcgatt ttcaacttat gagtgtctac caaaaaggtc       960
     gaactttgga agtttattac gacgaggtta atagacttct ttcacttatt gcaaatcaga      1020
     tacagacaga cgatagattt aaccatccgg aagcttcgaa agctatgatt ggaacataca      1080
     acaagaaagc gatcgatgct tttatcagag gtctcgatgg ggacgtttat aaatttattc      1140
     gtaactacga accaacatcc ttagcagcag cctacagcta ttgcatttct tttcaaaacc      1200
     tagagtgccg taagatgcta acaaaaccaa aacattttaa cacacccccg tcagccccca      1260
     gaaaccaaat accattgccc acacctcatc taccaccaag agtgttccaa caccaacaaa      1320
     gaccaatgac agcgaacaac gtaagacctc attttgcgca ccacccaccg attcaaaatt      1380
     ttgcaggaaa ttttacacaa cgtcctgttt ggaatcaacc aaatcagcaa agaccaattt      1440
     ttcagcgcac aaattttaat caaccaaatc agatgaaaaa ttttacacag cagagaaaca      1500
     attttcgcca aaatggacct gaaccgatgg aaatagaccc atcaattagg tcacatcaag      1560
     ttaattatgc gaacaggccg aactcctcaa acattcgtcc attgaaaaga caaagagctt      1620
     tcaatattga agcagttccg cgacgtgaat tagaaccgac ttcatatgaa gataatctct      1680
     acgatgatga tgtcgaaagt caggcgtcat acgaacgata tatgagaaat gtagaaaagc      1740
     aagaaaaact aaatgaaaat tctcattacg acgaaatttc tcgcgaagca gaattaaatt      1800
     ttttaggtta aaatcagctt taccatattt tatataccat ggtaaggcag gtcaacaaat      1860
     taaaattcta atcgacactg gatctaataa aaatttcatc aaccctttac atgcgaaaat      1920
     ttctcacgac gttataaaac cattttttgt atcatctgtg ggaggagatt tactcatcac      1980
     aaaatattca caagctcaaa tatttgcccc ttattccgat gtaaatgtca aattttatca      2040
     tttgcaggga ctaaaatcat ttgacgccat aataggttat gataccatca aagaaatggg      2100
     agcatttgta gacgctaaaa gagacaatct agttcttgaa aattttataa tacctctctc      2160
     acttcatcca ttacaggaag ttaacagaat tgaaataaga gacacacatc ttaaccacca      2220
     agaaaaagaa aaattacatt tatttcttaa caagtttcaa gatttattcc agccacccga      2280
     cgaaaagttg ccctttacaa caaaggtaga agcaaccata gccacgaatg atacggaacc      2340
     aatttactgt aagtcatacc catacccttt gtccctcaaa caggaagtgg aaacacagat      2400
     aaaaaaatta ttaaataatg gtataattcg accatctagg tcaccatata attcacctgt      2460
     gtggatagtt cccaaaaagg ttgacgcatc taacgaaaaa aaatatcgac ttgtgatcga      2520
     ttacagaaaa ataaacctga aaactaaaag cgatagatat cccattcccg atacttcaac      2580
     agtacttgcc aatctaggaa ataataaata ttttacaaca ctcgatctag catcgggatt      2640
     tcaccagatt cgtttagcag aaaaagatat cgaaaaaacc gccttttcca tcaataatgg      2700
     aaaatacgaa tttttaagat tacctttcgg tctgaaaaat gcaccttcga tttttcagag      2760
     agtcatggac gatgttctta gagaacatat tggaaaaatt tgtcacgtat acatagacga      2820
     tataatagtc tttggaaaaa cattcgacga acatctgaaa aacttggaaa ttgttttgaa      2880
     tacattacga gaagccaatt ttaaaataca gccagacaaa tcagagtttt taagaacaga      2940
     agttgaattc ttaggattca ttgtttcaga atatggcttg aaaccaaatg agaaaaagat      3000
     agaaagtatc ttaaaatacc ccgaacctca aactattcga gaacttagat catttttagg      3060
     actgtctgga tattacagaa gatttgttaa aaattatgca gctttagcaa aacctttaac      3120
     aaaactttta agaggggagg atggccaagg ccactgcaaa attacaaaaa atcaatctaa      3180
     aaattttccg ataaaattag atgatgatgc caaacgcgct ttcaaaactc ttaaggaagt      3240
     tttatcatcc gatgatgttt tagcataccc cgattttgat catgatttta ttttaactac      3300
     cgacgcttct gacaaagcaa tcggagctgt tctttcccag aacgttaatg gtgttgaaaa      3360
     accaataaca ttcatatcta gaacactatc aaaaacagaa gagaattatg ctacaaacga      3420
     aaaagaaatg cttgctatag tttgggcttt acattctcta cgtaattaca tttacggtgc      3480
     aaaaataata atattaacag atcaccaacc tttaacatat gcaatgtcac caaaaaataa      3540
     caatgcaaaa ttaaagcgat ggaaagcatt catagaggaa cataactatg agctaagtta      3600
     caaacctgga aaaaccaacg tggtagctga tgctctttca cgcatacaaa ttaactcact      3660
     aactcctaca caacactctg ccgaagaaga tgatctttct tttatccctt ctaccgaagc      3720
     tccaattaat gttttccgaa accaattaat ttttcaaaaa ggtactatta gttcctacga      3780
     gtttgtaaac ccctttccta agtttaaaag gcacactttc atagaaccac aattttcaat      3840
     cgattttata aaagacaaac ttaagagatt catgatacct ggtataataa atggcatatt      3900
     cactgatgag ccaactatgg ggatcattca agaaaccttt aaaaatctat tcaatatatc      3960
     aaccatgaaa gcaagatttt cacaaactca agttcaagac atttgtgatc aagaacaaca      4020
     gatagaagaa attcgtaaaa tacataactt tgcccataga aacgctaagg aaaattcatt      4080
     acaagctata aaaaaatttt atttcccttc catgagaaac aagatagaac aatatgttaa      4140
     aaactgcgaa acttgcaaag tagaaaaata cgaaagaaga ccccctgaat acataccagt      4200
     taaaacacca atcccaaaat atccaggaga aattgttcat gttgatatat ttgcgtataa      4260
     tgcaaatttt ttattcatct cgtcaatgga caaattttcg aaatatttga aattaaaacc      4320
     aattaaatca aaatccatag cagacgttaa ggaagtactg ctacaattat tatacgattg      4380
     gaatttgcct agacaaatta tatttgataa cgaatgtaca tttgtatcga acgtcataga      4440
     gcagtccata ctaaatttag gtgtatcaat ttttaagaca ccagtgaata gatcagagtc      4500
     aaatggacaa gtggaacgtt gtcactccac gatcagagaa atcgcaagat gtacaaaagg      4560
     tttgaatcca gacatgagct taattacctt aatacaacaa gccgtgtata agtataataa      4620
     tactattcat tcttttacaa aagagactcc cagaaaagta tatattggag agcaatcaga      4680
     agaactttca tttagagata gatcaaaatt aaaagaaaaa attgagagta aaattataaa      4740
     aatatttgaa gaaaaaaatg aaaagattaa agatgataag taccaagatt acgaaccgaa      4800
     tcaatttgcg tatgaaaaaa ataaaactat gaataagcgt gacagtcgtt ataagacagt      4860
     ggtagttaag gaaaatcatc caacgtatat aatagattcg aacaatcgaa aaatccacaa      4920
     aataaattta agaaaaaatt aatgatataa ttatgattta attaattttc tattacagaa      4980
     tcgcgttttt cacactatat ggtgttctac aagctagcat aaacattttc gacttaacaa      5040
     acaacccatt ggctattgtt ccgttaggac aagcaaaaat taggatcgga tacttgagga      5100
     cgattcatcc aattgatctt accgagctag aagagataat ttctcgagtt tttgaaaata      5160
     gcacaaacag tacaggaaaa tccccattgc aaagtttaat taatttgaag ctcgaaaaac      5220
     ttaacgccac aatttctaag attaggccac gtagacttcg aacgaaaaga tggaacagta      5280
     taggtaccgc ctggaagtgg atagctggca gtcccgacgc agaagatcta acgataatca      5340
     acaccaccct gaattcgctc atcctacaaa acaacgagca gctattaatc aataatggtc      5400
     tcagcagaag attccaagaa acaaccaata ttgctaatca tgttatcgac cttcagaata      5460
     ggatccaaag ggaacatcaa actgagatac aacagatcat taagatagca aacctagacg      5520
     cattacaagc ccatataaaa acactccaag aagccatact agccgctaag catgggatac      5580
     cgaatagcga gctactatca atagaagact taaacaccgt tgcagaattt ctggcacaaa      5640
     atggcattta ctatacatca gttgaagaaa tgttaacaca agccacagca caagttacca      5700
     tgaattcaac acacgtgata tttatgctaa agtttccacg tctatcctat gaaacttatg      5760
     agtacaacta tatcgactct atcatacaaa atgataagag aatcttaatc aagcataact      5820
     acataatccg gaatctaacc catatgttcg aattaccgca gccctgtatc gatcagagca      5880
     gccaccagct ttgcgaaagt aaagatctgg aagagccttc acgctgcata cgacaactcg      5940
     tacaagggga gcatacagaa tgtatgtacg aaaaggtgta ttcaacggga ttagttaaac      6000
     acattaacaa tgcgaatatt ctattgaatg atgccactgc cgaaatttca tccaactgca      6060
     gcaatataaa ccacattctt aatggatcat atctcataca atttcacaac tgcaatatct      6120
     ttattaacgg agaactcttt cccagcaccg aagtttcgat aaccggtaaa ccatatatat      6180
     caacccttgg cctcatcgct aaagaagacg gcatcagaga cgaaccttca attgaacatc      6240
     ttcgaaacat aacattgcag cacagagaga aactacatac catcagcctg gttaataatt      6300
     ccctcacatg gaaacttcat atctttgggt caattgggct aacgacaatt gttctgataa      6360
     caatagcaat tttatatttc attaccagta taagaagaac gaaaataagc ctcaacattc      6420
     caacgaacaa caccaaccga caggatgtcc accacataga aaccttcgtg aaaaaaccca      6480
     caacattcca tgctctcggc agactttgag ggcaaagtca tctaagaagg gagg            6534
//
ID   BEL12-I_AG  repbase; DNA   ; ANG   ; 5887 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   BEL12-I_AG is an internal portion of the BEL12_AG LTR
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; integrase; 5-bp TSD;
KW   Bel clade; BEL12-I_AG; BEL12-LTR_AG; BEL12_AG; RING Zn-finger;
KW   peptidase.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-5887
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A., Jurka J.;
RT   "BEL12_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 31-31 (2003).
XX
CC   [1] (Consensus)
XX
CC   BEL12_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL12-I_AG, an internal portion of BEL1_AG is flanked by
CC   BEL12-LTR_AG
CC   LTRs. The BEL12-I_AG consensus sequence was reconstructed based
CC   on
CC   multiple alignment of 20 copies; they are less than 1% divergent
CC   from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1726-aa BEL12_AGp Bel-like
CC   protein
CC   (pos. 582-5759).
CC   BEL12_AGp is composed of the peptidase A16 (pos. 130-250), RING
CC   Zn-finger (pos. 358-410), reverse transcriptase (pos. 700-900)
CC   and
CC   integrase (pos. 1450-1600) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="BEL12_AGp"
FT                 /translation="MPAADKRVKMFNLKRVEIMNTLQDFEEFTKSFDATID
FT                 AYQIPSRLEQLEELVSEFTELRKAFNETVDDSEAFDIMQKDRREFNKRSHE
FT                 VRAFLLKNSSHSGASSGLNTTQVNTTISAGTQNHLRLPKVDLPSFDGEITK
FT                 WLTFKDRFSSMVHDSTEMPEVLKLQYLLSALKGDAAHQFEHMQITADNYYV
FT                 TWEALLKRYDNSKVLKREYFKAFYSLEKMKTDSTEELARIVNEANRLVRGL
FT                 ERLNEPVDKWDTPLTSLLFYKLDSKTLVAWEQYSVDFKTDEFTNLVEFLEQ
FT                 RVNILKSSAQNICNQYSANSIMVTGRQARRDGRNVALPVQQTNNTFKGYLK
FT                 CPLCNEQHPLHVCERFERASVINREEIVRKHGLCFNCLRKGHSARECRSTY
FT                 VCQQCKRKHHSKLCKIGRLSEVEVVPSTSRLTATAQANCSKKTVILSTAQI
FT                 IILDVNDQPYKVRALLDNGSQLNFITERVAQELRLKRARVSEQIAGVGGAI
FT                 MRVAGSVVGTIRSLTTEYTTCLEFLILPKIATDLPSETMDVRGWKLPKDVR
FT                 LADPTFHERGSIDMLIGADTFVEMIKAKKIKLDHELPTLLETELGWIVSGA
FT                 YKHNNLNQSMACTIVSQGGENDIASLMNTFFNIEEVQDQNLWNVEERECED
FT                 HFQATTRRDENGRYVVRLPLKAERELGESKEVALRRLIGLERRFEREPKVK
FT                 EAYEAFMQEYITLGHMSVRENENSSDGYYMPHHAVFKQDSTTTKCRVVFDG
FT                 SCKTSNGRSLNDILKVGPTIQQDTTDILLRWRRRAIAVVGDVEKMYRQVWV
FT                 HEEDRKFQRILWRSHSSEKIKTYELNTITYGTASAPFLAIRTLNQVLEDNK
FT                 EKYPLAASRINDFYVDDFISGADSENEAKQLCEETKAALAMGGFPLRKWAS
FT                 NCPHILPSETEIDNIQRVIELKSREGAVSTLGLVWNPILDTLGVKISEPET
FT                 CEIYTKRSIIRTIAKIYDPLGIVDTVKAKAKQFMQRVWSLKKENGDSYGWD
FT                 EEIPQQMRQEWEVFERQLTHLQEVQVPRCVTIVGARNIQIHGFCDASEEGY
FT                 GACVYVRSTNGEEIVSRLFVSKSKVTPLATKHTIARLELCAAHLLGKLLVK
FT                 LKRATEDPYETFCWTDSSTVIYWLKSSPSRWKTFVANRVSQIQNATKEFEW
FT                 RHVPGIHNPADAVSRGRNPAEVVEDKLWWHGPDWLVKDPEHWPKNIESGNT
FT                 CETAKEEKQTKTTLTCMVKEESFINKLCERVGSFTKLKRIVAYCHRFFDRK
FT                 RIHRKSYFELRELKRAEKTIIRLVQNEVYATEYECIKQGQQVVRKSPLRVI
FT                 RPILDKDNVMRVGGRLSNADIKDEQKHPVIIPGKHRIAELIADKYHKILRH
FT                 AGAQLMINTMQLRFWIVGARNVAKRTVFNCVKCTRCRPKLIQQPMADLPEQ
FT                 RVRQARPFSISGVDYAGPIMVKGTHRRAVPTKGYISIFVCFVTKAVHIELV
FT                 SNLTSSAFLAALRRFVARRGHVTELHSDNGTNFRGANNKLRELYKLLNSDT
FT                 HQDEVVGWCAERDMKWKFTPPAAPHFGGLWEAAVKSMKFHLKRVLGTGHLT
FT                 FEDLSTLLAEIEACLNSRPITAISEDPNDMEALTPGHFLVGNHLQTVADVD
FT                 IADVPTNRLNHWRLIQKHMQHIWNRWHREYLSTLQKRAKWNKNAISIEPGR
FT                 LVILQEDNVAVSKWPMARVVDLHPGKDGVTRVVTLKCANGKEIRRPIHRIA
FT                 PLPIES"
XX
SQ   Sequence 5887 BP; 1982 A; 987 C; 1423 G; 1495 T; 0 other;
     tttggtcctt cgaaccggat ccgaattacg gatattcttt gctagttttt tgtggtttat        60
     gctatttggt taccgagcgc caagtgggag tgcaaagaaa tattggattt cttagcagaa       120
     cggtgtgttc tccactccat tcgtgttgtt gctactgctg caggagccgg acactcatcg       180
     ttggtttgtg tgtgtgagag agagaggacg tgaagccacg aaaggagctg cgtatctgtg       240
     ggctgtcggt aaacagcaaa agacgaactg tgcgacgacg aaaggtgcga agttgtaata       300
     cggtgaatag ctgaatttag tgcgtgcgtg aactttccat taataacata tttgtggata       360
     attagtgtca gcgcagaaca ttttcgaacg cgtgagtgtc gttcaaccgt agtagtggag       420
     tgggtgtgcg tgagtgacta tcctagcgcc atacttggca cccaaagctg cgcgcgtatt       480
     agttcaggtg tcgacaactt ccaggggtac ggaactcatt gctgtgcgtt ttattaaaaa       540
     ttgtgttaag aagtgcctaa agaacaatta ttgggagcaa aatgccagca gcagataaac       600
     gagtgaaaat gttcaattta aagagggtag aaattatgaa cactttgcaa gatttcgaag       660
     agtttacgaa atcctttgat gcaaccatcg atgcatatca gatacctagt cggttggaac       720
     agttagaaga gttggttagt gagttcacgg aattacgtaa agcattcaac gaaacggtag       780
     atgattcgga agcgttcgat atcatgcaaa aagatcggcg tgaatttaac aaacggtctc       840
     acgaagtaag ggcattttta ttaaaaaata gttcccattc tggggcgtcg agtgggttga       900
     acactacaca ggttaacaca actattagtg caggaactca aaatcatctg cgccttccta       960
     aggttgacct tccaagcttt gatggtgaaa taacaaaatg gcttacgttc aaagacagat      1020
     tttcgtctat ggtgcatgac tcgacagaaa tgcctgaagt gttaaaattg caatatttat      1080
     tatcggcgct taagggtgat gctgcgcatc aatttgaaca catgcaaata acggccgata      1140
     attattatgt gacatgggaa gctttgttaa aacgttatga taattctaag gtgttaaaaa      1200
     gggaatattt caaggcattt tattctctag aaaaaatgaa aaccgactcg acggaagaat      1260
     tggcacgtat cgtgaacgaa gcaaatagat tagtcagagg gttagaacgt ttgaacgagc      1320
     ctgtcgacaa gtgggacact ccgttaacaa gtttattgtt ttacaaattg gacagtaaaa      1380
     ctttagtggc gtgggagcag tactcggtgg atttcaaaac agatgaattc acaaatttag      1440
     tggaattttt ggaacagcga gtgaacattt taaagagctc tgcgcaaaat atttgcaatc      1500
     aatattcggc taattcgatc atggtgaccg gcaggcaggc gagaagagat ggtaggaatg      1560
     tggcattacc agtacagcaa acgaacaata catttaaagg gtatctcaag tgtccactgt      1620
     gcaacgaaca gcatccgttg catgtgtgtg agagattcga aagagcgtca gtgataaatc      1680
     gagaggagat agtaagaaaa catggcttat gttttaattg cttgcgaaag ggacactcag      1740
     cacgtgagtg tagatcgacg tatgtgtgcc agcagtgtaa aagaaagcac cattcgaaac      1800
     tgtgtaagat aggaagatta tctgaagtgg aagtggttcc gtcaacgtca agattaactg      1860
     ctacggctca agcaaattgt tcgaagaaaa cagttatatt gtctaccgcg caaattataa      1920
     ttctagatgt taacgatcag ccatacaaag tgagagcatt actcgataac ggctctcaat      1980
     taaatttcat cacggagaga gtggcacaag aactcagatt gaagagagcc cgcgtgagtg      2040
     aacagatagc tggtgtgggt ggagctatta tgagagttgc aggatcagtt gtgggtacca      2100
     ttcgatcact caccactgag tacacaacat gcttagaatt tttaattttg ccaaaaattg      2160
     ctaccgattt accatccgaa acaatggacg tacgaggttg gaagttacca aaagatgttc      2220
     gattagcgga ccctacattc catgaaaggg gctcaataga tatgttgata ggggcagaca      2280
     cctttgttga aatgataaag gcaaaaaaga taaagcttga tcatgagtta ccaacactac      2340
     ttgaaacgga attaggttgg attgtgagtg gtgcatataa gcataataat ttaaatcaat      2400
     caatggcatg cacaattgtt agtcaagggg gagaaaacga catagcttct ttgatgaaca      2460
     cattttttaa tatcgaagaa gttcaagatc agaatttgtg gaacgttgag gaacgagaat      2520
     gcgaagatca ttttcaagca acaacaaggc gtgatgagaa tggaagatac gtggtgcgat      2580
     taccactcaa ggcggagagg gaattgggag agtccaagga agtagcctta cggcggctga      2640
     ttggacttga gagaagattt gagagggaac cgaaggtgaa ggaagcatat gaagcattta      2700
     tgcaggaata tatcactttg gggcacatga gtgtcagaga aaatgaaaat agtagtgacg      2760
     gttactatat gccgcaccac gctgttttca agcaagatag caccacgaca aagtgtcgtg      2820
     tagtttttga tggatcgtgc aaaacgtcaa atggtcgatc tctcaatgat atattaaaag      2880
     taggtccaac aatacagcaa gacactacgg atattttatt aagatggcga cgtagagcca      2940
     tagcagtggt cggtgatgtt gaaaaaatgt accgacaagt gtgggttcat gaggaggatc      3000
     gaaagttcca acgaatactt tggagatcac attcaagcga aaaaataaaa acatatgagc      3060
     ttaatacaat aacgtacgga acggcatcag cgccatttct tgctatacga accctaaatc      3120
     aggtgctaga agacaataag gaaaaatacc cactagcagc atcgcgtata aatgactttt      3180
     acgtggatga ttttatttct ggtgcggatt cagagaatga agcaaaacaa ttgtgcgaag      3240
     aaaccaaggc agcgttagca atgggtgggt ttcctttacg caaatgggct tctaattgtc      3300
     cccatatatt accatctgaa accgaaattg ataatataca aagggtaatt gaattgaagt      3360
     caagagaggg tgcagtatca acattaggac ttgtgtggaa tccgatctta gacactctag      3420
     gtgtaaaaat tagtgaacca gaaacttgtg agatatatac aaaaagatcg attataagaa      3480
     caatcgcaaa aatctatgat ccattgggga ttgtggatac agttaaagca aaagcaaaac      3540
     aattcatgca aagagtatgg tcattaaaaa aagaaaatgg tgactcatac gggtgggatg      3600
     aagaaattcc acagcaaatg agacaagagt gggaagtgtt tgagaggcag ttaacacatt      3660
     tacaagaagt acaagtaccg agatgcgtaa cgatagtagg agcacgtaat attcaaatac      3720
     acggattttg tgatgcttct gaagagggtt atggagcttg cgtatatgtg agaagcacga      3780
     atggagagga aatagtttcg cgattatttg tatcgaaatc aaaggtcacc ccattagcta      3840
     caaaacacac aatagctaga ttagaactat gcgcagctca tttattagga aagctattgg      3900
     tgaaactcaa aagggccaca gaagatccat acgaaacatt ttgttggaca gactctagca      3960
     cagtaattta ttggttgaaa tcgtctccaa gtcgttggaa aacattcgtg gcgaatagag      4020
     tatcacaaat acaaaatgca acaaaagaat ttgaatggag gcatgtgcct gggattcata      4080
     atccagcaga tgcggtttcg agaggtagaa atcccgcaga ggttgttgag gataagcttt      4140
     ggtggcatgg accagattgg ctagtcaaag acccagaaca ttggcctaaa aatatagagt      4200
     caggaaacac ttgtgagaca gcgaaagaag aaaaacaaac gaaaactaca ttaacatgta      4260
     tggtgaaaga ggaaagtttt ataaacaaac tatgcgagag agtaggttca ttcacaaaac      4320
     taaaaaggat tgtcgcatat tgtcatcgtt tcttcgatcg taagcgaatc catcgcaaat      4380
     cttattttga gttgagggaa ctaaaacgag ctgaaaagac aatcattcga ttggttcaaa      4440
     atgaagtcta tgcaactgaa tacgagtgta tcaaacaagg gcaacaagta gtgcgaaaat      4500
     caccattgag agtgattaga ccaatactgg acaaagataa tgtcatgaga gtaggaggtc      4560
     ggttgtcaaa cgccgacata aaagacgaac aaaaacatcc tgttattatt ccaggaaagc      4620
     acaggattgc agagttgatt gccgacaagt accataagat acttcgtcat gctggggctc      4680
     aactgatgat aaacactatg cagttaaggt tttggatagt gggagcgcgc aatgtagcga      4740
     aacgtacagt tttcaactgt gtgaaatgta ctcgttgtag accaaaactg attcagcagc      4800
     caatggctga tcttccagag cagagggtga gacaagctag accgttctca attagcggtg      4860
     tggactacgc aggaccgata atggtaaagg gcacacaccg acgggcggtg cccacaaaag      4920
     gctatatttc aatatttgtt tgtttcgtaa caaaagcagt tcatatcgaa cttgtatcaa      4980
     atctaacctc ttctgcattt ttagctgcac tgcgtcgatt cgttgcgagg agagggcatg      5040
     ttacggaatt gcattcggat aacggcacaa acttccgagg tgcgaacaat aagttgcgcg      5100
     aactgtataa attactaaat tctgatacac accaagacga ggttgtagga tggtgcgccg      5160
     aacgagacat gaagtggaag tttacacccc cagctgcacc acattttgga ggtctgtggg      5220
     aggccgcggt gaaatctatg aaatttcatt taaagcgcgt gttaggtaca gggcatttaa      5280
     cgtttgaaga tttatcaacc ttattagccg aaatagaagc atgtctaaat tctcgaccaa      5340
     ttacggcaat atcagaagat ccaaatgata tggaagcact taccccaggg cattttttgg      5400
     tagggaatca cttacaaacg gtagcggacg tagacatcgc agatgtgcca acaaacagat      5460
     taaaccattg gagactgata caaaaacaca tgcaacacat ttggaatcgt tggcatcgcg      5520
     aatatttaag tacattgcag aagcgagcaa agtggaacaa aaatgcgata tcgattgagc      5580
     caggaagatt agtaattcta caagaagaca atgttgcagt atctaaatgg ccgatggcaa      5640
     gagtagtgga tttacatcca ggaaaagatg gtgttacacg agtagtaacg ttgaaatgcg      5700
     caaatggcaa ggaaattcgt aggccaattc atagaatagc tcctttacct atagaatcgt      5760
     aaattgaaat caataattgg aattatgtgg aattaagatg aggaatttta agaaatcaaa      5820
     taggaatatg aaaatgaatt caatcattac tgaatattaa aaaacattcg tttttggtga      5880
     ccgggaa                                                                5887
//
ID   Q           repbase; DNA   ; ANG   ; 4526 BP.
XX
AC   U03849;
XX
DT   03-2002 (Rel. 7.11, Created)
DT   03-2002 (Rel. 7.11, Last updated, Version 1)
XX
DE   Q is a non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; ORF2; ORF1; CR1 clade; Q.
XX
OS   Anopheles gambiae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles.
XX
RN   [1]
RP   1-4526
RA   Besansky J.N., Bedell A.J., Mukabayire O.;
RT   "Q: a new retrotransposon from the mosquito Anopheles gambiae.";
RL   Insect Mol. Biol 3(1), 49-56 (1994).
XX
DR   Genbank; U03849; Positions       1    4526.
XX
CC   Q is a CR1-like non-LTR retrotransposon. It encodes a
CC   DNA/RNA-binding
CC   protein (Q-ORF1p) and the reverse transcriptase (Q-ORF2p).
CC   Q-ORF1p (positions 210-1376):
CC   QCCAVITRDFAMAAICFSCAEPLEATGCIISCAYCDATFHRGCCKLPPELIDAVLSNVDLHWSCIGCTNM
CC   LKNPRCRSVKEIGAQVGFQAALNSAVAAIGKLVEPIVAEVRSGFTLLQTASTPHNRNSDPRPATGRKRRR
CC   IIEDSASPGVNKIVNSRGNTLCAASSPNAYTNTTIAVQPAPTQPHELVGTDPLSSPLQAAPREPFTDRIW
CC   IRLSAYQRPSLWNKWSLSVKRRLATDDVIAYCLLRRGVSVDSMNWLSFKVRVPAILRDAALTPSTWPVGI
CC   GVREFFQSRQHDHQTSSPIATRNRFTTRTPATSTEHRYTTRTPTTTHRLAARTSTPPDPETTSSQQCHPP
CC   VNDTLEAPNSTLVSGPPQNHRASSPHLHQSTIDRFFLN
CC   Q-ORF2p (positions 1264-4413):
CC   MIPWKHPTQHLFLDRPKTTVLHLRTYTSLQSIAFFSTRRSSAHCTQQTRQASCSDNAAQLTYRLPALSNR
CC   HNDNATAEYLSCYYQNVRGLRTKTKEFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFSVYRCDRSLS
CC   GSSSRGGGVLLAVSNAYESIELPSRDRSLEYICVRVACNNAHLYVMVVYIPPQLSSEISTLRSLHDCISS
CC   FTLRLKPSDLLFVIGDFNQPSISWSTADPSSSPAYSSITHYEPTARSLANNTFVDGFKFNGLVQLNHINN
CC   SHGRMLDLLYANNAAAKLCSPVFPSVVPLVPLDSYHPALDFNIRINSSTRRNSTTRQNSTTTALYRYNFA
CC   KADYVKLNDMISMFNNSFHCSNFISLDEAVCSFSSFMLQAFVVCVPVQRPKPNPPWADRTLKRLKRVKRA
CC   AYRHYQTRRCQRSRSIYFDTHSLYCSYNRFRYRRYLSKIQRNLCRWPDSFWRFYNSKTKSTHTPKSITYK
CC   GATSANTNEMCNLFADRFADCFSPAMNDTDTIDAALVNTPAGAINMSTPFIDSEIVLSALAQLKPSFAPG
CC   PDGIPSTVLKRCQTTVAPILAKLFNASLANGYFPKAWRKSWMVPIYKKGDRTDAINYRGITSLCAIAKVF
CC   ELVIYKNLLHACRSYLSPYQHGFVPKKSTTTNLVEFVTYCTSQIDAGAQVDAIYTDLKAAFDSLPHAILL
CC   AKLDKLGIPSPLVQWLKSYLIHRTYIVKIDKHMSKEIVSSSGVPQGSNIGPLLFILFINDVTLALPPDSI
CC   SLFADDAKIFAPINNTGDCTFLQDCIEIFCSWCKRNGLTICIEKCYCVSFSRCRSPVTGTYFMDGTAVNR
CC   QNHAKDLGVLLDSSLNFKQHIDDVVARGNQLLGVVIRTTNEFRNPMCIKAVYNCIVRSVLEYSCVVWSPT
CC   TASSIARIEAIQRKLTRYALRLLPWQDRNNLPPYAARCRLLGLEPLSVRRRNAQCSFIAGLLNGSIDSSP
CC   LLHRVDIYAPSRTLRSRETLRLAQPRSSAGRSDPMFRMSAVFNTVSDCFDFDISTQCFKERLRLLPWPQ.
XX
SQ   Sequence 4526 BP; 1117 A; 1250 C; 917 G; 1242 T; 0 other;
     acgtttgacg tttgacgttt aattgttcgg ccgcatttcc gtcgcgctcc gtgatttttc        60
     aataattctc ttgtgttttc tgcgtcgcat cgcattgttg ccttttctac ggactattaa       120
     actgtttaac atcatcgctt cgtcttggcg aattgtttag tcctgcatca caactgtggt       180
     ttcctgctgt tttttcctgc tcggcttagc agtgttgtgc tgtgattacg cgtgatttcg       240
     cgatggcggc tatttgcttc tcgtgtgctg aaccgctaga ggccaccggc tgcatcatca       300
     gttgtgcata ttgtgacgct acgttccacc gcggctgttg caaattgccc cccgagctga       360
     ttgacgcagt attgtccaat gtcgacctgc actggagctg cattggctgc actaacatgc       420
     ttaaaaatcc gcgctgccgt tccgtaaaag aaataggcgc ccaggtcggt ttccaagccg       480
     ccctcaactc agctgtagca gctattggca agctcgttga gcctattgtc gccgaagttc       540
     gcagtggttt taccctcctt caaactgcat ccacgcctca caatcggaac tctgatcctc       600
     gaccagctac tggtagaaag cggaggcgta taatcgagga ttcggcatct cctggtgtaa       660
     acaaaattgt aaacagtcgc ggcaacaccc tttgtgccgc gtcatcgcca aacgcataca       720
     ccaacaccac gattgccgtc cagccggcac ctacacaacc gcatgaactg gtgggaaccg       780
     atccgttatc gtcaccgctt caagctgcac ctcgtgagcc attcacagat aggatctgga       840
     tccgcctatc cgcttatcaa cggccgtcac tgtggaacaa gtggtcgctt tctgtaaagc       900
     gtcgcttagc caccgatgac gttatagcgt attgcctgct gagaagaggg gttagtgtgg       960
     acagcatgaa ttggctttca ttcaaagtga gggtcccggc tatccttcga gatgcggcac      1020
     tcacaccatc cacctggccc gtcggtatcg gtgtacgtga gttttttcaa tcccgtcaac      1080
     acgaccacca aacctcatct cctatagcca cccgaaaccg ctttactaca cgcacaccag      1140
     ctactagtac tgaacaccgc tacaccacac gcacaccaac aacgactcac cgtttagccg      1200
     cacgcacgtc tactccacct gatcctgaaa caacatcatc acaacagtgt caccccccgg      1260
     tgaatgatac cttggaagca cccaactcaa cacttgtttc tggaccgccc caaaaccacc      1320
     gtgcttcatc tccgcaccta caccagtcta caatcgatcg cttttttctc aactagacga      1380
     agttccgctc attgcacgca acaaacacgc caagcctcat gctctgacaa cgcagctcaa      1440
     ttgacttacc gtttacccgc tttatccaac cgccacaatg acaacgctac cgctgagtat      1500
     ttaagctgct attatcaaaa cgttagaggt ttgcgtacta aaacaaaaga atttcactta      1560
     gctgtatcag aggctgactt cgatctcatc gcactcacgg aaacttggct tgttgacaac      1620
     attccatctg ctcttctctt caacaacaac ttctctgttt accgctgtga tcgctctctc      1680
     agcggctcta gctctcgcgg tggtggtgtt ttgctagccg tttctaacgc atacgagtcg      1740
     atagaattac cttcccgtga tcgttctctc gagtatattt gtgtgcgcgt cgcctgtaat      1800
     aacgcacatc tgtacgtcat ggtagtatac attccaccgc agcttagctc cgagatatcg      1860
     actcttcgct ctctacatga ttgtatcagc agcttcactc tcagactgaa gccttcggat      1920
     ctgctgtttg ttattggcga tttcaatcag cctagcataa gctggtccac agctgatcct      1980
     tcgtcctcgc cagcatactc atcaatcacg cactatgaac caactgcgcg ctcactggcc      2040
     aacaacacct ttgtggatgg atttaaattt aacggattag tgcaacttaa tcacatcaat      2100
     aattcacacg gacgcatgct tgacctgctc tacgctaaca atgctgcagc taaattgtgt      2160
     tcgcctgtct ttccaagtgt tgttccgctt gtacctcttg actcctacca tccggcgtta      2220
     gacttcaata tacgtattaa ctcgtcgacc cgacgcaatt cgacgactcg acaaaactcg      2280
     acgacaaccg cattgtatcg ttataacttt gctaaagctg actatgtgaa actgaacgac      2340
     atgatatcaa tgtttaacaa tagctttcat tgttccaatt ttatttcact tgacgaagca      2400
     gtatgttcat tctcgtcctt catgctgcaa gcttttgttg tatgcgtccc agttcagcgt      2460
     cctaaaccta accccccctg ggcggaccgc acactcaaac gactcaaacg tgtaaaaaga      2520
     gctgcttatc gtcactacca aacgcgccgc tgccaaagat ctcgctcgat ctactttgac      2580
     acgcactctt tatactgcag ctataacagg tttcgatatc gcagatattt gagtaaaatt      2640
     caacgtaacc tctgcaggtg gcctgactcg ttttggcgct tctacaacag caaaacaaaa      2700
     tccacgcata caccgaaatc cattacgtac aaaggagcaa caagtgccaa cactaatgaa      2760
     atgtgcaatc tcttcgcgga tcgcttcgca gattgcttct caccggccat gaatgatacc      2820
     gataccattg atgctgctct cgtcaacact ccggctggag caattaacat gagcactcct      2880
     ttcatcgaca gtgagatcgt tttatctgcc ctagcgcaac taaagccttc cttcgctcct      2940
     ggacccgacg gaattccttc taccgtgctg aaacgctgtc aaacgacggt agcacctatc      3000
     cttgcaaaat tgttcaatgc atcgctagcc aatggctact ttcccaaagc gtggaggaaa      3060
     tcttggatgg ttcctattta caaaaagggc gacaggacag atgccatcaa ctaccggggt      3120
     attacatcct tgtgtgccat tgccaaggtg ttcgaactag tgatatacaa aaatctgcta      3180
     catgcatgcc gcagctacct aagtccgtat caacatgggt tcgtgccaaa aaagtcgact      3240
     accacgaacc tggttgaatt tgtaacctat tgcactagtc aaattgatgc cggagctcaa      3300
     gtcgatgcaa tttataccga tctaaaagca gcattcgact ctcttccgca cgcaattctt      3360
     ctcgctaaac tcgataagct aggaattccc agcccgctcg tacagtggct taagtcgtac      3420
     ctaattcatc gcacatacat cgtgaaaatt gataagcaca tgtccaaaga aatagtcagc      3480
     agctcgggtg tgccacaagg aagcaacatt ggcccgcttc tcttcatatt gtttatcaac      3540
     gatgttaccc tcgctttacc tcccgacagt atcagtctgt ttgccgacga cgcaaaaatt      3600
     tttgcgccta ttaacaacac aggtgattgt acattcctgc aagactgcat cgaaattttc      3660
     tgttcgtggt gcaagcgtaa tggactgact atctgcatcg agaaatgcta ctgtgtgtct      3720
     tttagtcgat gcaggagccc agtgactggg acctacttca tggacggcac tgcagttaat      3780
     cgacagaatc atgccaaaga cctgggcgtt ctgcttgact ctagtttgaa ctttaaacag      3840
     catatcgatg acgttgtagc cagaggaaat caattacttg gcgtggttat ccggacaact      3900
     aatgaattcc gcaaccccat gtgcatcaaa gctgtgtaca actgtatcgt tcgttcggtt      3960
     ctggaatatt cgtgcgtagt ctggagccca actaccgctt cttcaattgc tcgaattgag      4020
     gcgattcaac gtaagctcac gagatatgcc ctacgcctac ttccctggca ggatcgcaat      4080
     aatcttcctc cgtatgctgc gcggtgccgt cttctaggcc ttgaacctct ttcggtcaga      4140
     agacgcaatg cacagtgttc tttcatcgct ggattgctaa atggctctat cgactcatcg      4200
     ccattgttgc atcgagtcga catctatgca ccatcccgaa cacttaggtc tagagaaact      4260
     ctacggctcg ctcaaccccg ttccagtgct ggtcggtcag accctatgtt ccgcatgtcg      4320
     gctgtcttca acactgtctc ggattgcttc gacttcgaca tctcaactca gtgcttcaag      4380
     gaacgtctcc ggcttttgcc gtggccgcag tgaattgcga tgcaaatctt gtttttgcta      4440
     tgtatttttt tttttttatt gaactgttac atcttaatta ggccatacgg ccgttgaaga      4500
     ttaataaata ataataataa taataa                                           4526
//
ID   CR1-6_AG    repbase; DNA   ; ANG   ; 4293 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   03-APR-2003 (Rel. 8.03, Last updated, Version 1)
XX
DE   CR1-6_AG is a CR1-like non-LTR retrotransposon - a consensus
DE   sequence.
XX
KW   Non-LTR retrotransposon; reverse transcriptase; CR1 clade;
KW   AP endonuclease; DNA/RNA-binding; PHD finger; CR1-6_AG.
XX
OS   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelinae; Anopheles; Anopheles gambiae.
XX
RN   [1]
RP   1-4293
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-6_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3(3), 57-57 (2003).
XX
CC   [1] (Consensus)
XX
CC   CR1-6_AG is a young family of CR1-like non-LTR retrotransposons.
CC   The CR1-6_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~10 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-6_AG occurred less than 1 million years ago.
CC   The 3' terminus of CR1-6_AG is composed of the ATAAAC
CC   microsatellite.
CC   CR1-6_AG encodes two protein sequences: a 358-aa CR1-6_AG-ORF1p
CC   (positions 225-1299) and 998-aa CR1-6_AG-ORF2p (positions
CC   1300-4293). CR1-6_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (aa positions 4-57). CR1-6_AG-ORF2p is composed
CC   of
CC   the AP endonuclease (aa positions 50-230) and reverse
CC   transcriptase
CC   (aa positions 550-780) domains.
XX
SQ   Sequence 4293 BP; 915 A; 1227 C; 1026 G; 1125 T; 0 other;
     tctgacgtct aactgctcgg tcgcttatcg ctgtgctccg cgtttttcca aaaatattta        60
     agtgtatttt ctaacgtacc cagttaatac tcgttcaact gactaccaaa ctgcttcctg       120
     ttactgttgc gcgttagtgt gttatttcat tgacccacga ctgtgtatta acgtttttaa       180
     tccgggttaa cggtggtgtg atcaaaaccg cacataattt cgcgatggcg gctatctgtt       240
     tcgcgtgtgc tgtgtcactg gatgctgccg actgtatcgt cggctgtgcg tactgtgagg       300
     ctacttttca ccgcggttgt tgcaggctgc cttccgagct gattgatgcg gtcctgactc       360
     acatcgatct gcactggagc tgcactgggt gcaccaatat cctgaaaaat ccgcgctgcc       420
     gatcagtcaa agagatcggg gctcaggtcg gttttcaagc tgctctcacc tcaactgttg       480
     cggctgtggg gaagcttatt gaaccgatta tcgccgaggt gcgcagtgga tttactctac       540
     tgcaaaatgc acccatacct cagctttgca ataccgatcc tcggcccgtt gcgggtagaa       600
     agcggcggcg tatcatcgag gattctatgt cccctgatgt caacaaaaac gtaaacattc       660
     gtcaaaataa catgtttgca gcgtcatcgc caagcgcgta cactaacact acagtcggca       720
     tcccaccctc gtctacgcta ccggaagaac tcatgggaac cgattcgcta tcgtcaccgc       780
     ttcgagcagc gtttccccag ccggccacag acagaatatg gatccgacta tctcgcttgt       840
     ccactgccgt caccgtggag caagtggtcg cttctgtgaa acgccgttta gccaccgatg       900
     acgtcctagc atactgcttg ctgaggaagg gagtcagtgt tgacagcgta aactggcttt       960
     ctttcaaagt gagagtaccg gccgcccttc gtgacgcagc actcgcccca tcgtcctggc      1020
     ctgtcggtat tggtgtacgt gaatttgtac aatcccgtca acgagagcat ggacactcat      1080
     cgtcaccaat caccatcaaa caccgttctc tcacacgcac acctgttgtc atcgatcgcc      1140
     gatcgatgcc tcgcacacca acatccactg tctatcacgc accggcacac gcatcaactt      1200
     cacaggctca aacactaaca tcaccacaat tgggagaaca cacgctgaac gacactactc      1260
     atggtcctaa ttcaacactc attgacggcc cgcttttaat tcgccgcact tccaacacca      1320
     acttacaaca gaccacactt gaccgtttct ttcacgaata gacgaacctc tgttaagtct      1380
     gcacaaacac ctacctgtta tgttcctgct gctaatgcgc ttcgcactgc ccgttccact      1440
     gcctctgttt actatcaaaa cgtgcgggga ctgcgcacga aggtcgatga gtttcgcctg      1500
     tcggtgttgg aatccaattt cgatgtaata gtgcttacgg aaacctggct cgatcctagt      1560
     ctaccttcgg ctttgctgtt tgacgatagc ttccgagtct accgatgcga tcgtagtgtt      1620
     gacaacagta catgttcccg cggtggaggt gtgttgattg cgtgctctca gtctctgacg      1680
     tcacgggagc acacaacggt gcatccatcg cttgagctag tgtgcgttgt aatacaacta      1740
     ggcaattccc gactattcat cattgctgca tacctcccgc ctagacttgc cgcaaatgct      1800
     gccacgctcc gtgaaatcga aaattgcatt cgctcattat gctcaactat gcatcccgga      1860
     gacggtttac tcctgttagg agacttcaac caacctctcg tctcctggtc agccgctcag      1920
     catgatccgg atttgccatt tctgcattat gagccacgta cgcgatcggc tctctccgct      1980
     ctgtttatgg acgagatgca tcatagcgga ctcttccaga tcaatggtca tcttaacacc      2040
     agcggacgcg tcttagacct ggtgtttgca aataatgctg ttgcttctgt ttgccttccg      2100
     cttgaacttt gcctcacccc gctgttagca attgacacct atcacccggc gcttgagttg      2160
     gccatcccgc taccacgaga ggaatcagcc gttcctgcgc taacatcacg ccttgactac      2220
     gcgcggacgg actttaacag gctcctgccg atgatcgcct cgttcgcgaa tgtcttcgat      2280
     tgttcccatt acgccactct tgacctcgct gtgaaagatt ttgagcggtt catgttgcaa      2340
     gccctgaatg aatgcacgcc ggtgaaacga cctaaacgag gccccccttg gggtgacaga      2400
     acgctgcgca ggctcaaaac ggctaaagct gccgcgtatc gcgattattt gttgcgtagg      2460
     tgtcccgctg cattgcgcaa ctataacact gcgcactctc tctatcggcg ctataacagg      2520
     ttccgctacc tggggcacgt acggcgtacg gttttgcgct gccgcggcaa ttcacgtgta      2580
     ctgtggaact tcgcaaacaa tcgtcggaaa tcctctggtt ttcctagctc cgtcagttac      2640
     aacgggcgca acggcaacaa tccgtctgct gtatgtgata tttttgcctc gcgctttgcc      2700
     gccaccttcc ttccagctgt aactgatgag aggcagatag ccgacgcatt atcaaacgta      2760
     ccggtggatg ctatggcccc aaacttgccg atcatcgatg agtattcagt ctcgaaagcg      2820
     attgacaggc tgaaatcttc gtttgctcca gggcctgacg ggatcccggc ttccacgctt      2880
     aagcgttgtg gcaccaccat cgcgcctatc ctggcctcga tttttcgcga ctcgctgcgt      2940
     tcgggcatct atcctgcctg ctggaaaact tcgtggcttg ttccagtgca caaaaagggg      3000
     gacaaatcaa atgcatgtaa ttaccgtggc attacatcgc tttgtgcctg cgctaaggtc      3060
     ttcgagctcc tggtgtacga acctctcctc gcagctgcct cgaactacat tagcacagct      3120
     caacatggat ttgtccctca gcgttcaacc accaccaacc tggttgagtt cgttagcctc      3180
     tgccacagga ccatcgatgc cggctcgcag atcgacgcag tctacacgga catcaaggct      3240
     gccttcgata gcgttccgca cgccttgctg ctcgcaaagc tcgaaacgct tggtctgcct      3300
     gtgcagctgc tggcctggat gcgctcctat cttactggtc gcacatactg cgtgaagatg      3360
     ggaccccata cgtcgcgccg tatcgatgct tcttctgggg tgccgcaggg gagtaatctt      3420
     ggaccgctgc tgtttgtcat tttcctgaat gacgtaacac ggttgctccc tcctgacggc      3480
     cacctactgt atgcagacga cgcgaagctg ttcctgccta tccgcgaccg gtcagaccaa      3540
     ctccgccttc aagccactct aagtgccttc cagtcatggt gctctttgaa tggtcttgaa      3600
     ttgtgcgtcg agaagtgtgt tgtcgttacg tttgcgagaa agcggtgccc cttagtgtat      3660
     gactatgcgt taaatggatc taccattggt cgcaaaagct gtgtcacgga tctaggagtg      3720
     ctccttgacg aaaagttgag cttccacgac cagctagagc acgttgtcac taagggtaac      3780
     caattgatcg gcttactaaa acaaatagca cgagacatca ctgacccgat ttgcatcaag      3840
     acgctatact gtgctttggt gcgaccagtg ttagaatacg cttctgtagt atggtggcct      3900
     acagctgctc gtcccctagc tcgtttagag tcgatccagc gcaaattcac gcggttcgct      3960
     ttgcgctcct ggagtgtcca acttgactat gagggacgct gtgcgttgct tggcatcgag      4020
     acgctgaagc agcggaactg caacgctcag aggctgtttg tcgcgggact tcttgacaat      4080
     cggatcgact cgcccgcgct tctttcgagg ctcaacatgt atgtcccgcc gagatcgctc      4140
     cgagctagat cgctacttga cgtggaggaa cgccgcactc gctttggctc ctctgatccg      4200
     tttattcgta tgtgccgtga gtttaatgtc atttgtgatc gtcatcaacc tgacatgtcg      4260
     cgcaccgcat tgttgaatag tattcgtgtc gtg                                   4293
//
