ID   ATCOPIA41I  repbase; DNA   ; ATH   ; 5262 BP.
XX
AC   AC007261;
XX
DT   31-AUG-2000 (Rel. 5.07, Created)
DT   31-AUG-2000 (Rel. 5.07, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA41 copia-like LTR-retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; pol;
KW   LTR-retrotransposon; COPIA superfamily; endogenous retrovirus; env;
KW   internal region; ATCOPIA41I; ATCOPIA41LTR.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5262
RA   Kapitonov V.V., Jurka J.;
RT   "ATCOPIA41I.";
RL   Direct Submission to Repbase Update (00-AUG-2000).
XX
RN   [2]
RP   1-5262
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
DR   GenBank; AC007261; Positions    5435     174.
XX
CC   ATCOPIA41I is an internal region of the ATCOPIA41 copia-like
CC   endogenous retrovirus flanked by 4% divergent ATCOPIA41LTR
CC   LTRs; 5-bp target-site duplication.
CC   It encodes env-like protein (position 4045-4899):
CC   MFGAQSSDSLPEISRPTATECQEVKSDEALTEPNPDWALVLVKDPSPPLIIEVEDETLPSIDSVQNPKPK
CC   DPEATPSQPSVASRLRKRKSSAADPRIKRMKQGKGVTGSSSFDGIRFVSTEAEKRYAQFSQRNFIEEVEL
CC   SRKTNEAAREFIKQAGLIRTVTKFNPFTQNLVFEFWANLPTMKVDTYMVKVLVRNREYELSPGKINEMYG
CC   LPSVDARQQRMDIAGLVDEQVAEFLTGGKVSVLSKLQVSAFTPTSLELFKLCCSNSSPTSNAGYAQPDRL
CC   YITFL
CC   Gag and RT portions of the polyprotein are damaged by multiple
CC   mutations.
XX
SQ   Sequence 5262 BP; 1597 A; 967 C; 1258 G; 1440 T; 0 others;
     attggtatca gagctgacac ctaacacaag tggtatctgt tcaacaggtg agatcttgct        60
     acagggtaat ggagaaatca caacagtacg ttacaataca acagccattg aagttggatg       120
     ctgagcatta tggctactgg aaggtgtcta tccgataggc tatccaaagt gctaaaatgg       180
     atgcgtggtt cgcagtggaa gaaggatgga aagctccgat ggtcatggat gccaaggggt       240
     tagaaatacc aaaatctaag aaggattgga ctactgaaga gaagacagct gctaagaaca       300
     actcaacggc cttgtcaatc atcttcagat cattgccaat gagtcaattc acgcatgtgc       360
     aagggagcac atcagcaaag gaagcatgtg acattctaga aacaaccttt gagggaacca       420
     gtaatgtgaa gaggaccaga ttggatattt tagcgtctga atttgaaaac ttgacaatgg       480
     agaatgaaga gtcgattgag gaattcagca gtcggctgag ttcaatttcc tagtaaactg       540
     tcgtcttggg aaaaacgtac aaggacaaga agctggtcag cagtcggaac caaggatttg       600
     gataaacttt taaccatggg cagaacgtct aatgttacgt ggggtcttgg atacaatgga       660
     ggaaatacaa aaggtgagac tcagtttgtc aaaggatcca cttcagacga taaatctcag       720
     gtcaaaccca caaccactgt tcggaatctg tttcgctcta agcctaaacg agcatctcag       780
     gcttacaact tgagacaaac ttacttcaaa cctgagttca gaagcaagag aacaggatgc       840
     tggtactgtg gaggtctgag tcactacaaa gcagactgct acaactactt gaaacatgtt       900
     gttcagacta ggaggaatta tcaagtgggt gctcaaggac gacgagtcag acaagtgtat       960
     gtcaagaaag aacatctata gtgtcatgtt actcaaacat cagcgaatgc agaactcaag      1020
     gatctgatgt ggtgctttga tagtggatgc tccagacaca tgactggaac actagacaat      1080
     cttgctggat ataaggatgt gccatctagg aaagtcagat ttggagatgg aggtcatgcc      1140
     ttgatcaaag gaaagggata tacttccgga caagccttgc ctcatctaac cgatgtatat      1200
     catgttgatg gacttaaggc aaatctgatc agtatcagtc aactgtgtga cgatggtttg      1260
     agtgttttct ttacacaaac ggaatgcaaa gcctttgaca aacatggatt tgtaaagatg      1320
     gaaggacacc gtgctgcaaa taactgttac atgtggaatc cagaagagtc atgctacact      1380
     gcatcacaga tcgatcaatc tacttcagaa gatcaatcgc tagtgtctct gctagaatct      1440
     gatcatatgg gtgaagccat gagttcggtt caggagttta ccatatacac aatgagctgg      1500
     caggctccat tcaagttcac aatcaacaag gtatgcaatt gtttagcttg gtatctgacc      1560
     agtctgtatg gcttacttgt ctcaggtggt tggtgggaag gtcagctgat ctcaggaaac      1620
     aagcaatctc agttccagtt cctcaaacac acggttcacg tcatctcaca accaatacag      1680
     tgtggaatct cattaacact agtgtcatga atgagattca agggggaaga gtgatcttgg      1740
     attcttcgtg tgttaacaat taggaagatg caatggagtg ggaactgaac ttacttaagt      1800
     ctgtcaagct attgggatct gatatctgca atcagatcat tgatgaagcc ggtgttgcaa      1860
     tccgtcttag acatctgctg ttggctcagg gctatattcg gatggaagac gagtcaaaga      1920
     ttgatacaca tcttgcttga tgtgaatcta tcaggtttct gctaggatgt gtgtgtgcaa      1980
     cacagttcta tgtttatcag atggtactcc agaaagggat cttgagtagt gaaccccaga      2040
     gggaatggtt tgagagtcac ccaagagcat tcggtgttcc gggacatcca tactcggctc      2100
     atagattgaa aacagttgtc tactgcttaa agcagcttcc ggagaaaatg tgttgtatgg      2160
     ctcgacaaat caaacacttg tacaagcttt tgttgaactt attaccagag agtttgaagt      2220
     aagtatgtac ggagttctga ggtacatgca gggcatacag attaagcaaa ctgatgaggg      2280
     catatctatg tcgcagaata tatacgcaag aacaatgatt gagaagttca aactggatgc      2340
     acaagagatt gtcacaacac cgatgaagat ctcgacaaga cttactgcag atgagagagg      2400
     aggagatgta aatgttagta tgtatcaggg gatgatcgag agtcttcagt acttgactgt      2460
     gagtagacca gatatctgtc atgcagtgaa tgtgtgtgct cagtatcaag tcaaccccaa      2520
     gatgtcgcac ttgtcagctg taagaagaat tctcaagtat gtgaatggta taccaacttt      2580
     cgagctgtac tacaccaagg acactgacaa tagactgaag ggatattgtg ctgcggattg      2640
     ggcttgatct ttggatgaca tacggggatc acttagagga tgctattttg ttggaaacaa      2700
     catggtgtct tggaagagca tgaagcagaa cagtcagctt ctatcaactg ctgaagcaga      2760
     gctaagttct ttggagagtt cgagttctca acttgtacga ctgaaacagc tcatagagga      2820
     gtgtggtatg atctctgatt ttccagtact gtattgcaat aatcatagtg ctatacattg      2880
     tttccaagaa cctgctagga agtctcgtac aatgcacata gatcataaac ataactatat      2940
     tcatgaattg gttaaggaga aactaatagc aattgaacat gtgggtacta aagctcaact      3000
     agctgatgtg tttatcaaac ctctgatgtc taacaaatta tgtactctac gaatgttcat      3060
     tggaatgttt gaactataat tgtgtttgag ttgtgctgat ctagaatagg gacctgaagc      3120
     aagaacaagt catggaaatc caaagatgca tagaggatca gcacttagca aagtcatgtg      3180
     gaaaatagtt gcatgtcatg ccggttcaaa tcagacgtaa aaagttgtcg tctaacagga      3240
     ggttaaagag ctgagaagat caacaaactg aatgaacttg gtacacaaaa aaaaaaaaaa      3300
     atgtgtatca agttcaccag gttcgaatat caagcaattg agaagtcaag tgatattgct      3360
     gatataacaa aataagggag taattcaaaa gaattcatat catcacgccc ctgtttagtc      3420
     aaactatctt caaaggacat tccagctgcc tgttacacgt tgatctgatt catgagagct      3480
     aaaggcatga cagtgtgaaa gactagccac tgaataatga gctgattcat caacgatctg      3540
     attggttatg acagtttcat gcggaagtcg tgaacacctg attggcacaa agcacatttt      3600
     caagtactag gaagaggtaa actttgaaat cagtgttgga aagcttttac cctcatgtgt      3660
     caattagctg tttaggtcac taaactagtt caggctataa aatgttcaat gttgctctga      3720
     atgtgtttga aatttaatca cgtgtttgat tgaaaattct cttggcaaag aagcacttat      3780
     gtgtttgtta agtgtttcag aatattaaaa cagtttgggc ccaagcctgt ttcaagccca      3840
     cagaatttca aggaggagtg ctcgagtatt ggagggaaaa agaggagtta gggtttgagg      3900
     agtcaaatca atttcttatt tggaagtcga gaaggcaatc ccctgtgttc aacgcaattt      3960
     cgagtgagat cgagcatgaa atcacttctc tccggtctgc aacgcctggt tcaatagaaa      4020
     gccgagtccg catcttctgc agacatgttc ggtgcacaat ctagtgattc gttgccagag      4080
     atttcacggc cgactgcaac agaatgtcaa gaggtgaaat ccgatgaagc actcactgaa      4140
     cccaaccctg attgggctct agttctcgtc aaagacccat cgcctccact catcatcgag      4200
     gttgaggatg agactctgcc ttcaatcgac agtgttcaga accctaaacc gaaggatcct      4260
     gaggctaccc cctcgcaacc ctctgttgca tctcgattgc gcaagaggaa gtcatctgct      4320
     gcggatccac gcatcaaaag gatgaagcag ggaaagggag ttaccggttc atcttccttc      4380
     gatggaattc gatttgtctc tacggaggct gaaaagaggt atgctcaatt ctctcaacga      4440
     aatttcattg aggaagtaga actgtctagg aagacaaatg aggcagctag ggagtttata      4500
     aagcaggcag gactgattcg aacggttact aagttcaacc cgttcactca gaatctagtg      4560
     tttgagttct gggctaatct gcccactatg aaggtagaca cgtatatggt caaagtcttg      4620
     gtgcgcaatc gggagtatga gctctcacct gggaagatca acgagatgta tggtctccct      4680
     tctgttgatg ctagacagca gcggatggat atcgctggtc tggttgatga acaagtggct      4740
     gaatttctca ctggtgggaa agtcagtgtt ctgagcaagc ttcaggtgag tgcctttaca      4800
     cctacgagtt tggaactgtt taaactctgc tgctcaaatt cgtctcccac atccaacgct      4860
     gggtatgctc agcctgatcg attgtatatt acatttcttt gattgagtat ttgatttttg      4920
     actaagttct gtgctcaagc agggggagat aaggcccctt cggactccgt tgatgctggg      4980
     ggagattaag ttgtggggga gctgtgttgt ttaagttttt aattgttata agcttcattg      5040
     tatttcagac caaaacagtt tcttttgtgt ttttgtttaa accgatgatt atatcatcgt      5100
     aaacatgggt ctgtaatatt tttaacacaa tgtttacttt cagactaatc atttatgcta      5160
     gatgatgttt ctagagtatg tgtgttatgt ctccgatttg agtttcaggt tatatcaata      5220
     aaggagtgct tgagtatcaa actcagtcaa aaagggggag at                         5262
//
ID   ATCOPIA42I  repbase; DNA   ; ATH   ; 5072 BP.
XX
AC   .
XX
DT   31-AUG-2000 (Rel. 5.07, Created)
DT   31-AUG-2000 (Rel. 5.07, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA42 copia-like endogenous retrovirus - a
DE   consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; pol;
KW   LTR-retrotransposon; COPIA superfamily; endogenous retrovirus; env;
KW   internal region; ATCOPIA42I; ATCOPIA42LTR.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5072
RA   Kapitonov V.V., Jurka J.;
RT   "ATCOPIA42I.";
RL   Direct Submission to Repbase Update (00-AUG-2000).
XX
RN   [2]
RP   1-5072
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
CC   [1] (Consensus)
XX
CC   ATCOPIA42I is an internal region of the ATCOPIA42 copia-like
CC   endogenous retrovirus flanked by ATCOPIA42LTR; 5-bp target-site
CC   duplication. The consensus sequence was derived from three copies,
CC   they are ~95% identical to the consensus sequence.
CC   Gag and RT portions of a copia-like polyprotein encoded by ATCOPIA42I
CC   are damaged by several false stop-codons.
CC   ATCOPIA42I encodes also env-like protein (position 3492-4687):
CC   MNAIFSGLQRLVQQRSVTPSSNLSEAASEEHPSQSLKAEEEENLNKAMVLYAEPEPTSLRSELPNKENQD
CC   EQAAVSPEPPVIVELPDECESTVVHVHRSETPIQAETRNQTCDQVPPLNNENPQVVQISDASESAQAVDS
CC   TDLSVSSRLLKRKQSAVVERMKRQKTNERKEAAGSSACGEIGLQRLATYHSXCXEEVEDDSVKVCVRGME
CC   YEFSPAKINVLFGLQSVDARAQQMQIAGLMDDEVTSYLTDGQVKVLQSLPMSTFSKNCRKLFKFSCRNWS
CC   PTTSEGYASTDRALLVYQIAHKLAFDFGKMVYEHIMQLALKPEAKFYIPFPSLVYQLLQMQHPVKFHVEK
CC   PEPLVQTKKKTAKKPSTQGVQTGDSTNGSGHRRAMKLAIEVLQTALDAGKCFSVFL
CC   Two false stop-codons in the env are masked.
XX
SQ   Sequence 5072 BP; 1536 A; 915 C; 1244 G; 1377 T; 0 others;
     attggtatca gagcggacac ctgataaaag aatttgttaa tcttttcaac aggtgagatc        60
     ttgcgacaag ggatggagaa agcacaacgg ttcgttgcga tacctaagcc actgaagctg       120
     gatgctgagc attacgggta ttggaaggtg ttgatcaggc aatcgattca aagtatcgac       180
     atggatgcat ggtttgcagt agaagatggt tggacgcctc ctaccacaaa ggatgcaaag       240
     ggagacattg tcttgaaatc aaggactgaa tggactccgg atgagaacac aacagccaat       300
     cacaactctc aggcactgtc tgtgattctt ggatctttgc caaggaataa gttcactcag       360
     gttcaaggat gcttatcagc aaaggaagca tgggacattc tgcaagactc attcgaaggc       420
     accaacaatg tgaagcgtac tcgtctggac atgcttgcgt tagagtttga gaatctgacc       480
     atggaagttg aagaatccgt ggatgacttc accggcaaac tgagctccat cacacaagag       540
     gctgttgtcc taggaaaaac gtacaaggac aagaagatgg tgaaaaaatt tctcaggagt       600
     ctgccagaca agcttcagtc acacaagtca gcgattgatg tatctctgaa ctcagatcaa       660
     ttaaagtctg atcaggtcgt tgggatgatg caggcgtatg atactgattc agtgaacgat       720
     gagcatggat tctctttgga gaaagtcagg attctaattg aggagttgat tctgaaaagg       780
     aaggaaaata aggagctcat ttctgaaaag ggaatcttga tggaaaaagt ttctgcactt       840
     gaaaaggagc ttggtgaaga gagaatcaaa tcccaaggac tggagaaaca gctagaagac       900
     caactgagaa acatcaagat gctgagtagg gggactaaag acttggataa gctcctgact       960
     gttggaagaa cttcaaacgt tacttggggt cttggatatg atggaacaag ttcaaaagga      1020
     ggaacgcgtt ttgtcaaagg gacaacttca gatgagaaat ctgatgatat ccaaccagca      1080
     gaagcacacc gcacggatgc accttcgaag gctcgaaagg cgttgaccag gagtatgcct      1140
     actcataact ggagacagtc agattatcag gttgatcaca atcatctgag gagcagaaga      1200
     acaggatgtt ggtattgcgg aagtcagaaa cactacagag ctgattgtta cagcttcctg      1260
     aatcgtgtta cgcaagtcag gcaccacaag cagcaccaca agaacgataa gcaagggaat      1320
     caagtctaca taaagaaaga tgatctttat cgtaatggtg gatattcatg tacctcaatt      1380
     aaggttatga atagagctgt tcttgttaac aactttgcta agtctggtta tgtgaaggca      1440
     aggacgagat cagaagcaag agttagtcag tcgagtgtca aacagctgag cagaagaacg      1500
     aggaattgtt tctgtagtga ccaaggacag attacagcta gttgtaactt gtgttacaat      1560
     cgagtaacta aattgctgaa gcgaaacaaa tatcacagcg atatttgtat atccaatcga      1620
     gattggatga agaaacctaa tgtttgccgt catgttgctg ataaacaagg acgtacgacc      1680
     ctcaaaagtg tgcgaactgg tgactgctgt tacatgtgga atccatccaa tccacattca      1740
     aagcagtttg ttcagagagg tgttctgaat ccgaagtgcc tacatagcca ggacttggcc      1800
     actagtagca aggtgcagca gtctggtaag tgttcgaatc atatcccaca tgatgctatg      1860
     ggaaggattc ggggggagaa agttaccaag cctgctggtg gcggatgaat caggaactga      1920
     atctgatggt gtttgtacat atgtctgtac atatctggag tcaaagttga tgagtctctg      1980
     tacatatcag gggagttgca gtgcatggat accattacaa gagtctgatg cagtgcaaga      2040
     tgctgactgg actggatccg tggaagattg ctgaagtaca agtggttgat gcttcttcat      2100
     gggtagcaac atggtctcga ggtagagtaa ggagcagaat attgtgtctc tatccattgc      2160
     tgaaatagag tactttgctc tagggagttg ctacactcaa atcatgtgga tgaaacaaat      2220
     ggcagctgac tatggtatga tctctgattc tttactaatt tattgtgata atcagagtgc      2280
     attaaacata ggaaataatc ttgttcaaca ttcacgcact aagcatattg atattttaca      2340
     ccatttcatt cgtgaacttg ttgaggcgaa actgatagta gttgatcatg tgagtactga      2400
     atatcaacta tctgatttgt gtaccaaaat cttggagttt attagcctca gtgatctgag      2460
     aaagttaatt ggtgtgcgtg agatctaatc tgtttcgtga gatgtgttga tctaagacag      2520
     gaacaaaaaa tgcaagaaca ggccatggaa atccaaggat gaatagaaga tcaacactct      2580
     gtgaataaag gtgtgtggaa aatagctgcc tgtcatgccg attctgtagt cagccgtaaa      2640
     acgttgtcgt ctaacaggag gtcaaagagc tgaggagatc aatttattgt gcaaaccaaa      2700
     ctaagggtat ctaaagccta atttggtgtc aagtgaccat catgcactga tatcagcagt      2760
     tgagaagtca agtgatgctg ctgatatgaa actgacagat caacagggat tcaaagttta      2820
     aaaaaagaaa agaagaaaaa ggagaaccct gttgtatcta aatctgagga agtgtggaaa      2880
     taaaagcagc acactcctga ttctttgagc aatctccaaa ggaaaattcc agctgcctgt      2940
     tacacgttga gccgatctac tggaattgaa ggcatgacag tgtgaaagac tagccactgt      3000
     acccagagtt gatctatcaa agatctgagt ggttatggta gcttcttgct gagttctgaa      3060
     caactggttg gcacggaaca cggaacagat ctcaaaggta taaaaatgtt ttgaatccaa      3120
     cgtagtgtac tcacatgttt caataacttt ctgggtcact aaactctgtt catgagtgaa      3180
     tggttgttcg ctaaatgatt tttaatctga actatgctaa catgtgatgt tgatcaatgg      3240
     gatgatatga atcaatggga ttatttgcaa gtgtgcacta atgtttttgt ttagtgtttc      3300
     aggctctaat tattttaggt atagcctaag cccatttgtt ttgaaggccc atgaacaaat      3360
     taagcccatt acttaatgtc taggttggag ggaaaaagag ttagggtttc tcatgtcaaa      3420
     tcaaacctgc ctagggagtc gttaactcga agacttgtgc tcaaagagaa tcaagttgaa      3480
     atctttcttg aagatgaatg cgattttctc tggacttcaa cggctcgtgc aacaaagatc      3540
     tgtgacaccg tcgtcgaacc tgtcagaagc agcctctgag gagcatccat cgcagtctct      3600
     gaaagctgaa gaggaagaaa atctaaacaa agctatggtg ttgtatgctg agcccgaacc      3660
     aacatctctc agatctgagc ttccaaacaa ggagaaccaa gatgaacagg cagccgtatc      3720
     tccagagcca ccggtgattg tggaactgcc tgacgagtgt gaatctactg ttgttcatgt      3780
     gcatagatct gagacaccca ttcaagctga gaccagaaac cagacttgtg accaagttcc      3840
     accactcaac aacgagaatc ctcaagtggt gcagatctct gatgcgtctg aatccgcaca      3900
     agctgttgac tcaacagatc tgtctgtgtc ctcgcgtctg ctgaaaagga aacagtctgc      3960
     tgttgtggag aggatgaaaa gacagaagac taacgaaagg aaggaagctg ctggttcaag      4020
     tgcttgtgga gaaattggtc ttcaacggct tgcgacttat cactcatgat gctaagaaga      4080
     ggtcgaagac gattctgtca aggtatgtgt gcgaggcatg gagtacgaat tctctcctgc      4140
     caagatcaac gttttgtttg gtctgcaatc agttgatgcc agagctcaac agatgcaaat      4200
     tgctggtctg atggatgatg aggtcaccag ctatctgact gatggacaag tgaaggttct      4260
     tcagagtctt ccgatgagca ccttctcgaa aaactgtagg aagctgttca agttctcgtg      4320
     cagaaattgg tctccaacaa ccagcgaggg atatgcaagt acagacaggg ctttgcttgt      4380
     gtatcagatt gcacacaagt tggcttttga ctttgggaag atggtgtatg agcatatcat      4440
     gcagcttgct ttgaaacccg aggcaaagtt ctacattccg tttccgagtc ttgtgtatca      4500
     acttcttcag atgcagcatc ctgtgaagtt tcatgttgag aagccagagc ccttagtcca      4560
     gactaagaag aagactgcaa agaagccatc aacacaagga gtgcaaactg gtgactccac      4620
     taatggttca ggacatcgca gagcaatgaa actggccatt gaagttctgc agactgcttt      4680
     agatgcaggt aagtgtttct ctgttttcct ctgaaatatt atatctctaa tgatgtttgt      4740
     gtgatttttg actaagtcat gcacttaagc aggaggagat gtgtctgatt ctgatgatga      4800
     tgggggaaat taatttgtgg gggagcttga tgtttttaac gtttaaaatc tagtttttga      4860
     caagcttgtt tttatttcac accatgcttt tgtttttgtt ctttttgaac tgatgatatg      4920
     tatcatctga aaacttgggt ctgtaataag ttaaacacag ctgcttggac gaatcttatc      4980
     ttttgatatg tatgctagaa acgtttctag attttgtctt gttgctgtgt ttgggtttcc      5040
     ttctgtttga ctttcaggtc ttgtcaggga ga                                    5072
//
ID   ATENSPM7    repbase; DNA   ; ATH   ; 8535 BP.
XX
AC   AC006586;
XX
DT   09-JAN-2001 (Rel. 6, Created)
DT   09-JAN-2001 (Rel. 6, Last updated, Version 1)
XX
DE   ATENSPM7, an autonomous DNA transposon.
XX
KW   EnSpm; DNA transposon; Interspersed Repeat; TIR;
KW   Autonomous DNA transposon; transposase; En/Spm superfamily; ATENSPM7.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-8535
RA   Kapitonov V., Jurka J.;
RT   "ATENSPM7.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
DR   GenBank; AC006586; Positions   63199   54665.
XX
CC   ATENSPM7 is an autonomous DNA transposon from En/Spm superfamily.
CC   Its individual copies are ~95% identical to each other.
CC   ATENSPM7 is 76% identical with ATENSPM3.
CC   ATENSPM7 has 22-bp TIRs and is flanked by 3-bp target site
CC   duplication. ATENSPM7 encodes the 1675-aa ATENSPM7p protein by
CC   16 exons. ATENSPM7p has the Em/Spm-like transposase domain.
CC   CDS join(1112..1143,1228..2136,2230..2905,2999..3264,
CC   3713..3737,3804..3997,4077..4186,43151..4862,
CC   5150..5494,5577..5780,6025..6132,6208..6459,
CC   6541..6579,6667..6966,7062..7521,7669..7904).
XX
FT   CDS           0..0
FT                 /product="ATENSPM7p"
FT                 /translation="MLDKAWVHLNRADPGYERGAWKFVRDVAAVLGDMDM
FT                 IICPCKDCRNVVRQSDCVVVDHLVRRGMDEAYKLHSDWYHHGDEKSVDKV
FT                 QSKLNQWNEEVFELYKAAEFFDEELACRGDLGENLVGDLSEIAECEDQRE
FT                 DEFLAKILDAETPLYPNCSNHSKLSAIVTLFRIKTHNGWSDKSFNELLQT
FT                 LPSMLPDDNVLHTSLYDVKKFLNSFHMGYEKIHACVNDCCLFRKKFKKLE
FT                 KCPKCNASRWKTNQHTGEVKKGVPQKVLRYFPIIPRLKRLFRSDEMAKDL
FT                 QWHFTNKSTDEKLRHPVDSVTWDKMNDNCWPVLLVNYNLPPHLCMKKENI
FT                 ILTLLIPGPQQPGNNIDVYLEPLIEDLNNLWKNGELTYDAFSKSTFTLKA
FT                 MLLWTISDFPAYGNLAGCKVKGKMGCPLCGKNTDSMWLKFSRKHVYMCHR
FT                 KGLAPTHIYREKKTWFDGKVEHGRKTRILTGHEVYQNLKNFKNDFGNVKK
FT                 SGMKRKRTVYKEPVYDSDDVSSESEEDEEVEVDEDELYRWKKRSIFFTLP
FT                 YWEDLPVRHNLDVMHTEKNVAHSIVSTLLHCGKSKDGLNARKDLQHLGLR
FT                 HALHPTTQGKRTYLPAAPWSLSKNEKKIFWKRLFDFKGPDGYCSNISRGV
FT                 SVGECKISGLKSHDYHVMMQQLLPVALRGLLPKGPRTAILRLCAFFNYLC
FT                 QRVIDIEVISVLETEIVETLCMFKRFFPPTFFDIMVHLTIHLGREARLGG
FT                 PVHFRWMYPFERYMKVLKDFFCNEFLKKTTNVEEKLDRNVEYVNSSILEG
FT                 RPISAGTSFTLTEMDKNIAHLAVIQNTAAFDHYVDMHLQYLQDSNTRCRR
FT                 DASVLWSMHAKNFAAWLKGEAINGQRFHTRSLERQSQNSGVYYEATAMCR
FT                 SSAKDTSQVVDLVSYYGRIIDIILLDYNVFYVPIFRCEWAVRGNGVKVED
FT                 GFTLVNLNQSQVSFLKDPYILASQAKQVFYSSEEGSNWSVVMRGASRRYS
FT                 NDESEDGNADIIGPLPVDVDMDTEMDEAEYARSDCEGIYVPNQPAIDEEP
FT                 PTEHQPSIDTERDVPNSEEPEGEVEFSGGHEQPRKRQRGPTKMKNLAKDP
FT                 TVRVKVDYNLMGEAIGPGSVKLSSYVGTLMREHVPINIVNWKKVTRDLKT
FT                 VLWKSIQARFELDEDWQRISVINQMGNLWRAHKSRRVKAINLAANNQERM
FT                 NLRPTNINPVEWQKFVKLKTSSAFKKLESGDPSSVTRLQVWIKSRTKKDG
FT                 TPVDTNAAEKIQEAAEIVGSDAPTFSTNPDEDHLAKLLGPDNPGRLRVMG
FT                 RGMSKTKLACLQVKNTCMAEMEERQVKLKKQVNDLEDEIIRIKNQRPEAE
FT                 MGENSAARSVNRKSHRKCVFVDWSETDENVGEGRILSSDPDDIVNDCRLG
FT                 PTDLKVLVETAYQPDAFLWRPAHKIFNMKEAVGHIIAWPADKCKLLDTDI
FT                 QIEDIAPLGLKGNKCKLLDLKNAEVIVAEGRWETQEPSALVNGLPLGPKA
FT                 VKVFVDSVKQPDTSLWRPTAEISYLEDCLMAFVAWPLSKVDFENPSSPTG
FT                 HNSTSEVSRSASKAKSAATASKSADGSKTSATASKAASESKSAAMSSKSA
FT                 SGSESPIDDATVISKENKKCKLMDLTGKNRVVAEGRWATNDPAHKVHHTP
FT                 LGSNAVKVWIDIVKVANVKVWRPSDEIEIMEDALSSCIA"
XX
SQ   Sequence 8535 BP; 2723 A; 1293 C; 1794 G; 2725 T; 0 others;
     cactacaaca aatatggaca ttgatagcag acgaggatag ctcatttacc gtacctgcta        60
     taaaagatgt gatttttttc ggttacttta taatagcacc taagaaacgc tatgatagaa       120
     aaattatgga gcggaaaaaa aaagtgactt agtccgccaa tacttagtga attattattt       180
     cttctaaaaa aaaaaaaact ctcgatactt ctctctcgtg aaaacctaag ctcaatattc       240
     tctctctcgt gaaaacctaa tttcttcttc caaattctct gtgtgtacaa gtgaaatctc       300
     tatcaaatct ccagcattat cgccgttcgt gaaaagcccc aatttcgctg ttcgtgagaa       360
     gccctaaatc tccatctcag ctcaattgaa ctctcatcga aggcatgtat tctatcctct       420
     gtgatttcat tctctgtttc atatctctgt gatttcgacc tgtttgattg agatttcgac       480
     ctgtttgatt gtgatttcga cctctatgtg tgataatagt ttcgactcaa atttagatta       540
     tgatttcgac tgatttgttt cataaacgat ttgtttccta aacgattgtg aaacttatac       600
     aaattagggt actgatttgg ttacagattt gttgcataaa cgattcatgt ttcaatctgt       660
     aacgattcat gtgtaaactt atattgaatg agtttttttt ttccaagtgc tggtgattgc       720
     aatgttgggg aactgaagct tctcatttct ctgtactcac acaacaggtt agtatcattc       780
     aacaaaatta gttgattgca atgttctgtc ctttgagtct gattcgtata tagcttgtta       840
     atgttgttgt ttatgtgatg agattagtat acttgcttaa ttatcttaag ttatcgtgag       900
     attagtttat gtacatggaa ttgcttatgt gcctgatttg gtgtactatt gactgatttc       960
     taatatgaaa aactctttta aagttgctta tggtttgaat atttacatgg aattgtctga      1020
     attgttgctt attgtggatt ataattggaa aattgtataa tctgtatctc tattttatct      1080
     ataaagggtt aaatttatat tataacatat aatgttggac aaggcatggg ttcatctaaa      1140
     caggtaagga attataatta tagttaggtt tcatatgggg tttggatact tagagtttct      1200
     atttttttct ttacttatcc attgaagagc tgatcctggc tatgaaagag gtgcttggaa      1260
     atttgtacgg gatgttgctg cggtgttagg agacatggac atgataatat gtccttgtaa      1320
     agactgtcgt aatgtagtac ggcagtctga ctgtgttgta gttgatcatc ttgttagaag      1380
     agggatggat gaggcataca agctgcatag tgattggtat catcatggag atgagaagtc      1440
     agtggataaa gttcaaagca aactaaatca gtggaatgag gaagtttttg aattatataa      1500
     agctgctgaa ttttttgatg aagagttggc ttgtagaggt gacttaggtg agaatctggt      1560
     gggtgactta agtgagattg cagagtgtga agaccaacga gaagatgagt tccttgcaaa      1620
     gatattggac gctgaaaccc cactataccc aaactgttca aaccacagca agttatcggc      1680
     tattgtgact ttgtttagga ttaagacaca taatggctgg tcggacaaga gcttcaacga      1740
     gctgcttcag acattgccaa gcatgttgcc agatgataat gtccttcaca catcattgta      1800
     tgatgtcaag aaatttttaa acagctttca tatgggatat gaaaagatcc acgcatgtgt      1860
     taatgattgc tgcctcttta gaaagaagtt caagaagctt gaaaaatgtc ccaaatgtaa      1920
     tgcttcacgg tggaagacta atcagcacac tggtgaggta aaaaaaggtg tcccacagaa      1980
     agtattaaga tattttccaa ttataccaag gctgaagaga ttgtttagat cagatgaaat      2040
     ggccaaggac ttacagtggc atttcactaa taagagcacg gatgaaaaac ttcgtcatcc      2100
     ggttgattca gttacatggg ataagatgaa tgataagtat ccttcatttg cagcttaaga      2160
     aaggaacatt aggctggggc tgtctacaga tggatttaac ccattgaaca tgaagaatag      2220
     taattatagt tgctggcctg tgctattggt aaactacaat ttgcctcctc acctttgtat      2280
     gaagaaggag aatataattt tgacattatt gattcctggt ccacaacaac caggtaataa      2340
     tatcgatgtc tacttagaac ctcttattga ggatttgaat aatttgtgga agaatggaga      2400
     gttaacatat gatgctttta gtaaaagtac ttttactcta aaggcaatgc ttctatggac      2460
     tattagtgat tttcctgcgt atggaaacct tgctggatgt aaagttaagg ggaaaatggg      2520
     ctgtcctttg tgtgggaaaa atacagatag tatgtggttg aagtttagca ggaagcatgt      2580
     ctatatgtgt catagaaaag gtttggctcc aacacacata tatagggaaa agaagacttg      2640
     gtttgatgga aaagttgaac atgggagaaa gacaagaatt ttaactggtc atgaagttta      2700
     tcaaaatctg aaaaacttca agaatgattt tggaaatgtg aaaaaatctg ggatgaagag      2760
     aaagagaact gtctataaag aaccagtcta tgatagtgat gatgtatcca gtgaatccga      2820
     ggaagatgag gaagtagaag tagatgagga tgagttatat agatggaaga aaagatcaat      2880
     cttctttact ttgccttatt gggaggtatg attacttgtt ttcagattta aatagctttt      2940
     atatgtttaa gtatgataca tcgattactt ctaaaatata tgtatgtcta tattgtagga      3000
     tctaccagta aggcataatt tggatgtaat gcatacagaa aagaacgtgg ctcacagtat      3060
     tgtatccaca ttgttgcatt gtggaaaatc taaggatggt cttaatgcac gtaaggatct      3120
     gcaacatctt ggtctacgac acgctttgca tcctaccaca caaggaaaga gaacatacct      3180
     tccagcagca ccttggtcct tgtcgaagaa tgagaagaag attttctgga agcgactatt      3240
     tgattttaaa ggtccagacg gatactgctc taacatttct agaggcgtgt cagtaggaga      3300
     gtgtaagata tcaggtctga aatcacatga ttatcatgtc atgatgcagc agcttcttcc      3360
     ggttgcactt agaggactgt taccaaaagg tcctagaaca gctatactac ggctatgcgc      3420
     attcttcaat tatttgtgtc agagagttat tgacattgag gttatttcag tattggaaac      3480
     tgaaattgtt gaaactcttt gtatgtttaa gaggtttttc cctccaacct tctttgatat      3540
     tatggtacac ttgacaattc atctaggaag agaagctaga ttaggaggac cagttcattt      3600
     taggtggatg tacccatttg agaggtaaat cttatctcta ttagtaattt aaacacttat      3660
     attatctagt tattgtttta ttattgctaa tccttacatt ttcattttac agatacatga      3720
     aagttttaaa agattttgtg cgaaacccag caagactaga gggttgtata gctgagtcct      3780
     atcttgcaga agaatgaatg cagttttgta atgagtttct gaaaaagaca accaatgtag      3840
     aagaaaagct agacaggaat gtagagtatg tgaacagctc tatattagaa ggccgtccaa      3900
     tatcagcagg aacatcattc acgcttactg aaatggacaa aaatatagcc catctagctg      3960
     tcattcaaaa tacagctgcc tttgatcatt atgtggagta agttccttgt gtaattttcc      4020
     atatcaaatt acatttatct agctgattct aactcaaggt gtttatgatt tggtagtatg      4080
     catttacaat atttacaaga ctcaaataca agatgcagac gtgatgcttc agttttatgg      4140
     tctatgcatg ctaagaattt tgctgcttgg ttaaaaggag aggcaagtaa attatatttg      4200
     taatgatgag tctgtttata aatctatact tgactgaatc ataatttttt attttgcaga      4260
     tatctaattc ttctgatgaa catgaagaca tagttaaatg gctagcatat ggtccacgat      4320
     gtactgctag gtcctatact ggttatatag ttaatggaca acgttttcac acacgctcac      4380
     ttgaaaggca gagtcaaaat agtggtgttt attatgaggc aacggctatg tgtagatcta      4440
     gtgctaagga tacttcacaa gtagttgatt tggtatcata ttatgggaga atcattgaca      4500
     tcatattgct agactacaat gtgttctatg tgcctatatt tagatgtgaa tgggcagtaa      4560
     gaggtaatgg agttaaagtg gaagatgggt tcactcttgt taacttgaat cagagccaag      4620
     taagctttct aaaggatcca tatatcctag catcacaagc aaagcaagta ttttattcaa      4680
     gtgaagaagg atcaaattgg tctgttgtta tgagaggtgc ttcaagaaga tatagtaacg      4740
     atgagtctga ggatggaaat gcagatataa ttggtccatt accagtagac gttgacatgg      4800
     atactgaaat ggatgaagct gaatatgcta gatctgattg tgaaggcata tatgtgccaa      4860
     atgtaacttc ttgattcatt tatatacggt cttctatatg cttttgttta tggttgatgt      4920
     gtgattttta tagatcttct atatgctttt gtataattgt caagttataa ctaattaatt      4980
     attccttttt tgcaggtgaa ttaaaatggc taaaggaaag aagaagagtg gacaaaagag      5040
     aaagaagaag tctatagatg atgaacctga gtatcttggt attgtggaac ctgtagctac      5100
     agaacagcgt gtagaggatc atcattcaga ataaccacca actgaaaagc aaccagctat      5160
     agatgaagaa cctccaactg aacaccaacc atctatagat actgagagag atgttcccaa      5220
     ttcagaagag ccagaaggag aggttgaatt ttctggagga catgagcagc cgcgtaaaag      5280
     acaaagagga ccaacaaaga tgaaaaacct agctaaggat ccaacagtta gagtgaaagt      5340
     tgattacaat ctaatgggag aagctattgg tccagggtca gttaaattgt catcatatgt      5400
     aggtacattg atgcgggaac acgtccctat caacattgtt aactggaaga aagtgactcg      5460
     agatctgaaa acagttctgt ggaaatctat tcaggtaaca agtagtgttt ttttttaagt      5520
     tgtctgtaat tgatccggtt cttctataat tatggtgtga ttgttcgtga atgcaggcaa      5580
     ggtttgagct tgatgaagat tggcaaagga tatctgtgat aaaccagatg ggaaatctgt      5640
     ggagagcaca caagtcacgc agggtgaagg ctattaactt ggctgcaaat aaccaagaga      5700
     ggatgaattt gagaccaact aatattaatc ctgttgagtg gcaaaagttt gtcaaactca      5760
     aaaccagttc agcattcaag gtaattactt gtgaatataa agttttgtat ttaaatgggg      5820
     attagtaaca tgtttcattg ttaggctgtg agtgatacat ttaaagcaag aagaaagaaa      5880
     cagatacctc ataccactag ccgtaaaggg attgtcagac taacagaaga aatggcaaga      5940
     tatctacttc atttattttg cttattatta tacggttatt gcttgtatgt tgtgacagtc      6000
     actgaaatgt tgttttttgt acagaaactt gaaagtggag atccttccag cgtgacaaga      6060
     ctacaggttt ggatcaagtc tcgtaccaaa aaggatggta caccagtaga tactaatgca      6120
     gctgaaaaga ttgtaagtct aaattagagg tgttgattga gtgtgtcttc gactagtaaa      6180
     acctgacact gtcttcatgt tttccagcaa gaagcagctg aaattgttgg aagtgatgct      6240
     ccaacatttt caacaaatcc agatgaagat cacctcgcca agcttttagg acctgacaat      6300
     cctggtaggc tgagggtaat ggggagaggc atgagtaaga ccaaattagc ttgtttacaa      6360
     gtgaagaaca cgtgtatggc tgaaatggaa gagaggcaag tgaaattaaa aaaacaggtc      6420
     aatgacttgg aagatgaaat catcagaatc aagaatcagg taagatactt taagagtttt      6480
     aaaatattca tcaaccagtt agagttatat aagttgactt tagttttgtt tatgttacag      6540
     aggccagaag ctgaaatggg tgaaaactca gctgcaagag taacatattc cttattcttt      6600
     tcataccatc taaatgattc ttcttattta agtttatgac tcttattttc tcagattttt      6660
     ttgcagagtg ttaacagaaa atcacatcgt aagtgtgtgt ttgttgattg gtctgagact      6720
     gatgaaaatg ttggtgaggg tcgtattctt tcttcagatc ctgatgatat agtgaatgat      6780
     tgtcgtctag gccctacgga cctgaaagtg ttagttgaaa ctgcatatca accagatgca      6840
     tttctatgga gacctgcaca caagatcttt aatatgaaag aagctgttgg acatataatc      6900
     gcatggccag ctgataagtg taaacttcta gacacagaca tccaaattga agacattgca      6960
     cctttggtaa ttaaaatttg ttgcactgtg ttatcaatgt atttcccctg tgtatcatct      7020
     gattatttgt attggatttg tttactgatt gtgtttgata gggtctaaaa ggaaacaaat      7080
     gtaaactatt ggatttgaag aatgctgaag tcattgttgc agaggggcgt tgggagactc      7140
     aagaaccaag tgcattggtt aatggacttc ctcttggacc aaaagcagtt aaagtatttg      7200
     tggattcagt aaagcagcct gatacatcac tatggagacc tacagctgaa atatcatatc      7260
     ttgaggactg tttgatggct tttgtagcct ggcccctgag caaagttgat tttgaaaatc      7320
     cctcatctcc aaccggtcat aattctacat cagaagtttc taggtctgca tcgaaggcta      7380
     agtctgcagc cacagcttcg aagtctgcag acgggtccaa aacttcagca acagcttcaa      7440
     aggctgcgtc agagtccaaa tctgcagcta tgtcttctaa gtctgcatct ggttctgaat      7500
     ctcctattga tgatgcaaca ggtccaagtt ctccaataag gaatacttta ccagcatagt      7560
     ctcctctcag gaagtctcca gtaagtgctt tcatatgtta tgaagttgtt tttgttaatt      7620
     atgatgactg atggtttata ttgtatacgt ggcagcgcat taacaaagtt atttccaaag      7680
     agaataagaa gtgcaagttg atggatttaa ctggaaagaa tagagttgtg gctgaaggac      7740
     gatgggcaac aaatgatcca gcacataagg ttcaccacac tcccttaggt tctaatgcag      7800
     ttaaagtgtg gatagatatt gtgaaggtgg ccaatgtaaa agtttggagg ccatcagatg      7860
     agatagagat tatggaagat gcacttagct cctgtattgc ttagctagag aacaaggtca      7920
     ttatgtctta aactgatggt tttcttgtgt aatgctaagt acctgaactt atgcacttag      7980
     ctcctgtatt gctttacttt gtgcttgaga cttttcttat gtattttgga tctaaactta      8040
     tgtttaatca aaggtcaatg tatgagattt tataaagcag gttatgtgtt atgtgtacta      8100
     taatcacatc tcagaaaatg ctataagaat acaggtaata gaatatttaa catatcacta      8160
     atgctatgtt ttaatcatct ttcgtagctt ataaattgat ataagagcat aacatagcac      8220
     ataatttgac taattatttt ccaattgaaa aaaggcaaac cacgataaaa caacatttcg      8280
     caacagctat attagagata tataacatag cacaaaaagt caaatattat ataatttttt      8340
     taagaaaatt aaacgtgata atacaactgt tctttatagc tatgttataa aactataaca      8400
     tagcatactg aactcacgct actgaatgtg gggtacttat aataacagtg ccctaaaata      8460
     gcgttcatga aaaagctatt aaagacatat tatagcattt ttctcgtgat aagaatgtcc      8520
     atatttgttg tagtg                                                       8535
//
ID   VANDAL21    repbase; DNA   ; ATH   ; 8244 BP.
XX
AC   .
XX
DT   13-OCT-2000 (Rel. 5.09, Created)
DT   13-OCT-2000 (Rel. 5.09, Last updated, Version 1)
XX
DE   Autonomous DNA transposon VANDAL21 - a consensus.
XX
KW   MuDR; DNA transposon; Interspersed Repeat; Autonomous DNA transposon;
KW   MuDR-like transposase; VANDAL superfamily; VANDAL21.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-8244
RA   Kapitonov V.V., Jurka J.;
RT   "VANDAL21.";
RL   Direct Submission to Repbase Update (00-OCT-2000).
XX
CC   [1] (Consensus)
XX
CC   VANDAL21 is a consensus sequence of a VANDAL-like autonomous DNA
CC   transposon. It was reconstructed based on six copies of the
CC   transposon. These copies are flanked by 9 bp duplications of different
CC   target sites, and they are ~98% identical to the consensus sequence.
CC   VANDAL21 encodes three proteins, VANDAL21p1, VANDAL21p2 and
CC   VANDAL21p3. VANDAL21p1 is a 778-aa MuDrA-like transposase.
CC   Functions of 132-aa VANDAL21p2 and 718-aa VANDAL21p3 are
CC   unknown.
CC   VANDAL21p1 (position 790-3126):
CC   MKTLGEKITLSMLEDRIMTKLGLDANKVKLHMRYNPRLFGVEEEMNVCDDEDVFVYVTSA
CC   KNNRRSVLVVEEISKPPEPEQLPEQLSRVGKSSVGKNYTELNSEEDEMRVDDGALIVLLE
CC   EEQGTQHQLEAIVEDHGTQHQLEAIVEDHGTQEDETRYDESMDNSDRGEQYVESPPAVEP
CC   GMFKKEWEDGIGLTLRQEFPNKAALHEVVDRAAFANSFGYVIKKSDKERYVLKCAKESCS
CC   WRLRASNISNTDIFSIRRYNKMHSCTRLSKGSSRLRKRKGNPQLVAALLHDHFPGQLETP
CC   VPRIIMELVQTKLGVKVSYSTALRGKYHAIYDLKGSPEESYKDINCYLYMLKKVNDGTVT
CC   YLKLDENDKFQYVFVALGASIEGFRVMRKVLIVDATHLKNGYGGVLVFASAQDPNRHHYI
CC   IAFAVLDGENDASWEWFFEKLKTVVPDTSELVFMTDRNASLIKAIRNVYTAAHHGYCIWH
CC   LSQNVKGHATHTNRDVLAWKFQELSRVYVVADFNRAYDGFKLRYPKATKYLEDTTVKEKW
CC   ARCCFPGERYNLDTSNCVESLNNVFKNARKYSLIPMLDAIIKKISVWFNEHRMEAASGSL
CC   ENKMVPLVENYLHDLWVFAEKLKVVELNSFEREYVVTCDKGIDYTVSLLLKTCSCKVFDI
CC   QKYPCIHALAAFINIMDDEDRRRGLELHDLVTKYYWAELWALAYYRTIYLVPDRSQWEVP
CC   DEVKALKIVPLSKKPKKGRKKMLRFPSTGEKRPKRQRTQNKRRPRQSCQWLLFGNTPI
CC   VANDAL21p2 (exons 4025-4204 and 4382-4600):
CC   MDRLCERDPYYDDMKVAKRAIEQMEMVAMMEGIPKFCPCGGSIVDTRKDEKRYYQCEKFK
CC   DDRTDCMHIRKLWDKAMEEEVSSLRESVDYNRKKVLSHEYLIEEMQKELKAHRAEIVNVS
CC   KVVFRNPMAPKK
CC   VANDAL21p3 (exons 7869-7090, 6673-5933, 5858-5697, 5619-5260
CC   and 5176-5063):
CC   YFRSISDSKSVMPPKTRGGGQGKRKEIEASAPAKTEKVKAPAEKVKEKVPAKKAKVQAPA
CC   KKAKVQAPAKKAKVQAPAKKDKEKVPAEEQSPAQTTATAMATNAAPTTAAPTTTAPTTAP
CC   TTESPMLDDSTFYDALKHIPAEEIQENMQTDEVEDENEKEEASEEEESGSSSRTLGSDSD
CC   SEETETNKELACANPVEEAERQDDGLAVIEEEEERSSASDEDVNVEKSVEDEGDEDERDE
CC   DVIVEKPVEERTIDEDIANVDMEEAMAMQPLGMYFPASEYTKKMKLATRCYISEVLKTFA
CC   DLEHPLTDVEKNYFMEHPSFKHIYHLPSGYTHKLMGMWMLFLRTASIEKKKEVWFVVNGV
CC   PIRYGIREHALISGFNCKAYPANYQSAGNMNFANRYFKTGVIRREDVKTKLMEMEPARSK
CC   DRLRMAVLYFLTSIIAVPTKTGERASPIDDFCVRAASDLTFCKTFPWGRYSFEYMLKSIS
CC   HTLDHFNGVVPNTQSPWPVPGFCVPLEFLAFEAIPSLRERFIEEKEGAHAGCPRMCKVNF
CC   KRTEMKGFTLEQINHVLGTTEVIESIIREKAEEVPLLAEITGVEDDVDKHDVVVDSWMKR
CC   LGQGREIRFEEVYNEDVQARMEAPNEEEVPTAVGPGDPTLVDVMEKLHSINDKLNEALLA
CC   LMEMEEKQATFEAFMDEMKAKMSQNPPDEEESTIKENAAAPVVPKRVTRSTRAKSSNV.
XX
SQ   Sequence 8244 BP; 2417 A; 1611 C; 1645 G; 2571 T; 0 others;
     gaatgatcat ctcttgtgtc ccttttgtgg gacaactaat ctgcaaaacc actttagagt        60
     cttcatatcc cctttgagtt aatgaattgt gttaagacga atttacccct gtaatttatt       120
     ttgaatgaat aattaaaata tttctagaaa acattttgaa aaaaaaaaaa acggaaaaag       180
     aaaaaaaaaa agctcgagct cgagctcgac ttcttcttcg ggcttcttcc tccggcgagc       240
     tccggcgagc cgcattgtcg tttttctcct cctgcaagct gcatcaatct actaagtcca       300
     ggtatggaga gagcttcaaa agctttgaat tacatatttt gaggattttg agattcaatc       360
     caattagatt tgggttattg tgttttagca cctacattag aagtttaagt atagatttag       420
     gcttcatttg gtctgttaat gggtaagcaa ttgatttcac atgctgattc atactaaatt       480
     gaactcaaat cgaatatttg ttcttgtcgc gaaaataata ctggtcgaac tagctatagt       540
     agtaccgtaa tttatataga tagtatgttt taatagcacc agtattactt agacacgtag       600
     tatttcatat atgtaatagt attactcaca catgtaatat ttcagaatta gtactagtat       660
     tactgaaaat gtactagaat cggtaatact agtaatattg actgagtatg tgtattgttt       720
     tggcaggtta caatgaaaga gaacgtgatc atatatttta aattccaagg tcgcatgtat       780
     aatgtgatga tgaagacatt aggggagaag attactctct caatgttaga agataggata       840
     atgacgaagc ttggattaga tgcaaataag gtaaaattgc atatgaggta caatccacgg       900
     ttgttcggag tagaggaaga aatgaacgtt tgtgatgatg aggatgtctt tgtttatgta       960
     acatccgcaa aaaataaccg gagaagtgtt ttggttgtgg aggagatctc taaaccgccc      1020
     gagccggagc aattgcccga gcaattgtct agagttggta aaagttctgt tggtaagaac      1080
     tatacggagt tgaattcaga ggaggatgaa atgagagtgg atgatggtgc actcatcgtc      1140
     ttattagaag aggaacaagg aactcaacat caacttgagg caatagtgga ggatcacggg      1200
     actcaacatc aacttgaggc aatagtggag gatcacggga ctcaagaaga tgaaacacgc      1260
     tatgatgagt ctatggataa ttctgatagg ggggaacagt atgttgagtc gccacctgct      1320
     gtagaaccgg gtatgtttaa aaaagaatgg gaagacggaa ttgggttgac cttacgtcaa      1380
     gaatttccaa acaaggcggc attgcacgag gtggtggata gagctgcatt tgctaacagt      1440
     tttggttatg tgattaagaa gtcggataag gagcgctatg tcctaaagtg tgccaaagag      1500
     agctgttctt ggcgtttacg agcgtccaat atcagtaata ctgatatatt ctcgattaga      1560
     aggtacaata agatgcatag ttgcactcgg ctaagtaaag gtagtagtag gctcaggaaa      1620
     agaaaaggca acccacaatt agtcgcagct ctccttcatg atcattttcc gggacagttg      1680
     gaaactccgg ttccaagaat tatcatggag ctagttcaga cgaaattagg tgtgaaagta      1740
     tcatactcga cagcgctaag ggggaaatat catgcgattt atgatttaaa aggtagcccg      1800
     gaagaaagct acaaggatat caattgttat ttatacatgt tgaagaaggt aaatgatggt      1860
     acagttactt atctgaaatt ggatgagaat gataaatttc agtacgtatt cgtagctttg      1920
     ggagctagca ttgaaggttt tagagtgatg aggaaagttt taattgtgga tgcaacacat      1980
     ttgaagaacg gatatggcgg agtgctagtg tttgcctcgg ctcaagatcc taaccgtcac      2040
     cattacatca tagcgtttgc cgtactcgac ggtgagaatg atgctagttg ggagtggttt      2100
     ttcgagaagc taaaaacggt tgtacccgat acttcagaat tggttttcat gacggacaga      2160
     aatgcaagcc tcataaaggc catacggaac gtgtataccg cggctcatca cgggtattgt      2220
     atttggcatt tgtcccaaaa tgtgaaaggt catgctactc acaccaaccg agacgtactc      2280
     gcatggaagt ttcaggagtt aagtcgggtc tacgtcgtgg cggacttcaa ccgagcgtat      2340
     gacgggttta agttgagata tcctaaggcg accaagtatt tggaggatac aaccgtgaaa      2400
     gaaaaatggg caaggtgttg ttttcccgga gaaagataca acttagacac aagcaattgt      2460
     gtggaatctt tgaacaatgt gtttaaaaac gcaaggaaat actcgttaat accaatgctt      2520
     gatgcgatca tcaaaaaaat ctccgtttgg tttaatgaac atcggatgga agccgcgtct      2580
     ggatccttag aaaataagat ggtgcctttg gtcgagaatt atttgcatga tttgtgggtt      2640
     tttgccgaga agctgaaagt ggtggagcta aactcattcg agcgtgaata tgtagtcaca      2700
     tgcgacaaag gaatagatta tacggtgagc ttgcttttga aaacttgcag ttgcaaggtt      2760
     ttcgatatcc aaaaatatcc ttgtattcat gcattagccg ctttcattaa cattatggat      2820
     gatgaagatc ggagaagagg tttggagtta catgatttgg ttacaaaata ttattgggcg      2880
     gagttgtggg cattggccta ttataggact atttatcttg ttccggatag gtcgcagtgg      2940
     gaagtaccag atgaagtaaa ggcgttgaag atagttccgc tgtctaaaaa accgaagaaa      3000
     ggaaggaaaa aaatgctaag gtttccatca accggggaaa agcggccaaa acgacaaagg      3060
     acgcaaaaca aaaggcgtcc aaggcaatcg tgtcaatggt tattatttgg gaatacgcct      3120
     atctgagttt tttactttgt ttctgcagtg atttgttgtt tttatggtat ggacttacta      3180
     tgtaatactg tatttcccct tctgtaatac tatgtctgtt tctattgttt ttttgtaata      3240
     ctggttataa caagtaatat catgtctgtt tctgtcgaat ttgtggtcat attagtacta      3300
     ctggtaatac taagttggtg ttatggagtt cgaatttgtt tacctcaaaa ctcaatgaaa      3360
     atgaatacag tgagttatta acagataaaa atgtattatt aatcatttat acttaattaa      3420
     gttagaaatt ttaatattaa atcgttttaa cttatcttta gtagactcaa tacaacatat      3480
     cccttatact tttaagctca cttttaatat tatcaccaac ttaaaatgaa aaattcatat      3540
     tgctacatat atttaattta taattgcaca aaatatttaa acctctatat ttataaagtt      3600
     caatccagtg tactactaaa taaacaaatt gtaaatatag gaaatactgc taaacatgaa      3660
     aaacatggaa agtaatacta tttgagaaat tggcactacc aaaaccttag gaaatactat      3720
     gctgtaaaaa ggctgcgcac atgtcaaaaa tctccaaaaa acggcgcaca cgtggggaat      3780
     taattttttt ggttttcccc caaaattttt ggcgcctaac aaattttgag attccctcca      3840
     aaaccaaaaa tttcactttt ttctttttcc tctttctttt tcgatctctt cttacaactt      3900
     tctttcatct ttcatcttct ttcctctttt tctttcatct ctcatctctc ttctcccaca      3960
     tctctcatct ctctcttcga ctcgaattct ctcacatctc tcatctttct ttcatctttc      4020
     taccatggat agactgtgtg agagagaccc ctactacgat gatatgaaag tggcgaagag      4080
     agccattgag caaatggaaa tggttgcgat gatggaaggg attcctaagt tttgtccatg      4140
     tggtggtagc attgtcgaca ctcgaaagga tgaaaagaga tactatcaat gcgagaagtt      4200
     taaggtatgt tgatgtagag cacaagtttt tcaagtttgt gtagatctag atctagatat      4260
     atttggtatt tcagagtatt tcccgttttg gtaatactgc ctagaacaag taatactgca      4320
     caagtttttc tagtttttgt agatctagat ctatatttga taaatatttg gtactttgta      4380
     ggatgataga actgattgta tgcacatccg taaactttgg gataaggcta tggaagaaga      4440
     ggtgagtagc ttaagggaga gtgttgatta caatcggaag aaagttctaa gtcatgagta      4500
     tctcatagaa gaaatgcaaa aagaattgaa agcccaccgt gcagagattg tgaacgtgag      4560
     caaagtggta ttccgtaatc ctatggctcc aaagaagtaa tgtgttatcc tattgttcct      4620
     taatcttatt gttaatttgc ttgtaagact ttccctatgc tttgtaagac tttccgtatg      4680
     ctttgtaaga ctttcccttc gattgtaaga cttctctttg attggtaata ctatggttgt      4740
     tcagtttgat atttccagta tatctcttaa tagtagtagc atgttgtatt tccagtatat      4800
     ctcttagttg tagtagcctt ttgtatttcc agtatatctc ttagtcgttg tagtacgagg      4860
     tatttccagt atttcagtaa aattcaatat cttagtagta gtagcacgag gtatttcccg      4920
     tatttcagtt aacaatatca taaaacatcc taatacatta attgaatcca aacatagttt      4980
     tacgagtact tgcgaaatcc taaaacaaag tcaaagtaca agaaatcaaa atacaaatcc      5040
     ggagaagtta cacgaatagt tttcacacgt tactagactt tgcacgggtt gaacgggtca      5100
     ctcgtttggg cacaacagga gcagccgcat tttccttgat tgttgattcc tcctcatctg      5160
     gtgggttctg agacatctgc attgttaatt tagttaaacc ttggtattac gcgatattac      5220
     caattatgga acagtatatc cggtattacc cagatttacc ttggctttca tctcatccat      5280
     aaatgcttcg aacgttgctt gtttttcctc catttccata agcgccaaca aagcttcatt      5340
     cagcttgtca ttgatggaat ggagcttctc cattacatca actaacgtcg ggtctcccgg      5400
     tccaacagct gtgggaactt cctcttcatt tggggcttcc attcgtgcct gcacatcctc      5460
     gttgtacacc tcctcaaatc taatttcacg cccttgacca agacgcttca tccaactatc      5520
     aactacaaca tcgtgcttat caacatcatc ctctactccc gtgatttcag ccaaaagagg      5580
     tacttcttca gccttctctc taattatact ctcaatgacc tatggaaata atagacaatg      5640
     aaatattaga aagaaataaa atcatatttg ctcaaggaat aataggaaat actaacctca      5700
     gttgttccga gtacatggtt gatttgctca agggtaaacc ctttcatctc ggtcctcttg      5760
     aaattcacct tgcacatcct tggacaaccg gcatgtgcac cctctttttc ttctatgaat      5820
     ctttccctaa gtgatggaat ggcctcaaat gctaaaaact acacaaaaca catgaaattt      5880
     aattgttagc ttcaattacg aaaatgtaac aaggataaaa catgtgactt acctcaagcg      5940
     gcacacagaa tccgggaaca ggccatggtg actgagtgtt cgggacgaca ccgttaaaat      6000
     gatccaatgt gtgtgagatc gattttaaca tgtactcaaa tgaatatctc ccccatggaa      6060
     atgtcttaca aaacgtaaga tcacttgcag ccctaacaca gaaatcatca attggactag      6120
     ccctttctcc ggtcttagta ggcacggcaa tgatgcttgt tagaaaatag aggaccgcca      6180
     tccgcaacct atcctttgat ctagccggtt ccatctccat tagcttggtt ttcacgtctt      6240
     cacgtctaat taccccggtt ttgaagtacc tgttggcgaa gttcatatta ccagcactct      6300
     gataattagc tggataggcc ttgcagttga aaccagagat caaagcatgc tccctaatac      6360
     catagcggat gggaactcca ttaacaacga accaaacctc cttcttcttc tcaatagatg      6420
     ccgttcgaag aaaaagcatc cacatcccca ttaacttgtg ggtatatccg gaaggcaggt      6480
     ggtagatgtg cttgaaactc ggatgctcca taaaataatt cttctcaaca tccgttagag      6540
     gatgttccaa gtcagcgaag gtcttcaaca cctccgagat ataacacctc gttgctaact      6600
     tcatcttctt ggtatactcc gacgccggga agtacatacc aagtggctgc attgccatcg      6660
     cttcctccat atcctgaaag aaacaaacat tcattcatat atcactcaat tgtaaatagt      6720
     actgccacag tattactctg tatttccaaa aagtattccc cgaaattacc agtattacac      6780
     aaatcctact attcatatat cactcaattg taaatagtac tgccacagta ttactctgta      6840
     tttctcagaa gtattccccg taattaccag tattacacag atactcctat tttactatgt      6900
     agtatttctc aaagttacta gtactaacta tcgataaatc acaattgtag tattactcta      6960
     aggtattacc cacatccgcc aatattacct aaatatcaac atagcatttc ccaatgttac      7020
     tagtactgtc cacagttcac aattgcatta ttacccaatt agatcggtat tacgaaatgg      7080
     aatacttacc acatttgcga tgtcctcgtc tatggtcctc tcctccacgg gtttttccac      7140
     tatcacgtcc tcgtctctct cgtcctcgtc tccctcatcc tccacggact tttccacatt      7200
     gacgtcctcg tcgctcgcgg agctcctctc ctcctcctcc tcgataacgg ctaggccgtc      7260
     atcttgtctc tccgcctctt ccacgggatt agcacacgcg agttctttgt ttgtctccgt      7320
     ctcctctgaa tcggaatcgg agcccaaggt tcggctacta ctccctgatt cttcttcttc      7380
     acttgcttct tctttttcat tttcatcttc cacctcatca gtttgcatat tctcttgaat      7440
     ttcttcagca ggaatatgct tcagagcatc ataaaacgta gaatcatcaa gcatcgggct      7500
     ctccgtcgtt ggagccgtcg ttggagccgt tgtcgttgga gccgctgtcg ttggagccgc      7560
     attggttgcc atcgccgtcg cagtcgtttg tgccggcgac tgctcctcag ccggcacttt      7620
     ctctttatct ttcttcgccg gcgcctgaac cttcgctttc ttcgccggcg cctgaacctt      7680
     cgctttcttc gccggcgcct gaaccttcgc tttcttcgcc ggcaccttct ccttcacttt      7740
     ctccgccggc gccttaactt tctctgtctt cgccggcgcc gacgcttcta tctcctttct      7800
     tttcccttga cctcctccac gcgtcttagg cggcatgact gatttcgaat cggaaataga      7860
     acggaaatac tggtgaaagg aagaagaacg atcgattgaa tttaaagaaa tagggaatgt      7920
     tgcggttaat ttcagcggtt actaaggaga agaagaagaa aaatcgaaaa cggttgtaat      7980
     gagaaaaaga atgaaattcg aattgggaaa tccctggaaa tattagggtt ttttttattt      8040
     gattttcaaa taaagagtaa aggtggttcg ggtggtttgg ttcggaaacg aaccatggtt      8100
     tttctggtaa ttaataggtt cagatgggga tatactagta atatccatat atttcgaatt      8160
     aaaaaaaaaa aaaattattt ctgtttttta caaggatttt ttggcttcct ctttgcaaaa      8220
     aagggactgg ccagacgatt tttc                                             8244
//
ID   RE1         repbase; DNA   ; ATH   ; 922 BP.
XX
AC   .
XX
DT   23-FEB-1999 (Rel. 3.2, Created)
DT   23-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Arabidopsis thaliana retroelement - a consensus.
XX
KW   RE1; reverse transcriptase.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-922
RA   Jurka J.;
RT   "RE1.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   Similarity reverse transcriptase and LTR retroelement
CC   has been identified; detailed classification not available.
CC   RE1 SEQUENCE WAS DELETED SINCE IT DOES NOT REPRESENT REAL OBJECTS
CC   in Arabidopsis thaliana genome.
XX
SQ   Sequence 922 BP; 236 A; 162 C; 153 G; 305 T; 66 others;
     gataatagac tagagttggt ttgtaatctt tgatttcggt taagtgtaaa ccaaacatta        60
     aaccgagata ctctatcata taaagagtat ctgtgtaaca gaatcattaa gttgaataac       120
     adaatatttt catcttcttc gattctctct gttgctatta tggtatcaga gyratggatc       180
     wcraagatyc rtccgattca acctaawctc tgwgtwtctt cragytyttg gatcttccra       240
     wctygttgat tcttykyttc ttcrttcwat ttctggaaat ttcagttgtt tmraggttct       300
     tykttgrtct tgcgatggtt kccgtwgaka aattgcggcg tcgtactaga agatcgagca       360
     aaamttcagc tgagaaaact ccagatcgtg ttcaarcttc accrrwtcca ccgattycac       420
     ctccgwttca acaaaatytc aaywmaarac catcgatsta tcctttwcca cagttcgayt       480
     tctcggatgc tcantattcg ccnttcgcgc tctcaaatgg tgatcatcca ggtttwactc       540
     ttgtttctca tattcttgat ggaactaatt atgayanttg gacgatagcg atgagtatta       600
     gtttagatgc taagaataag attggttttg ttgatggatc ttttccaaga cctsctgatg       660
     atgatcctan ttttagaaty tggtstagat gcaayagtat ggtkaaatct tggattctga       720
     attctgtrtc taaggagatc tataanagca ttcttgtatt taatgatgct gcagaaatct       780
     ggaawgatct gtatactcga tttcacatna ctaatctccc tcggacntat aagctgactc       840
     agcagattca stctcttcad caaggaacwa tgtctctttc tgattactat actnckttaa       900
     agactctttg ggatganttg ga                                                922
//
ID   ATHILA5_LTR repbase; DNA   ; ATH   ; 1636 BP.
XX
AC   .
XX
DT   17-OCT-2000 (Rel. 5.9, Created)
DT   17-OCT-2000 (Rel. 5.9, Last updated, Version 1)
XX
DE   ATHILA5_LTR is a long terminal repeat from ATHILA5 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy-like endogenous retorvirus; ATHILA superfamily;
KW   Long terminal repeat; ATHILA5_LTR.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1636
RA   Kapitonov V., Jurka J.;
RT   "ATHILA5_LTR.";
RL   Direct Submission to Repbase Update (00-OCT-2000).
XX
CC   [1] (Consensus)
XX
CC   ATHILA5_LTR is a long terminal repeat from ATHILA5 endogenous
CC   retrovirus. Solo copies are flanked by 5-bp target site
CC   duplications.
CC   Copies of ATHILA5_LTR are ~95% identical to the consensus sequence.
CC   There are ~20 copies of this LTR in the genome.
XX
SQ   Sequence 1636 BP; 376 A; 291 C; 334 G; 624 T; 11 others;
     tgataacact agattttaac ctttttaagc ccttgttttt catgcattta gcttagtttc        60
     atgtctcttt tcatgcattc ttagtctctt ttccttcctt tgcacatttt gcattgcatt       120
     gcatagcata cttgcatttg gagtgtttta caggtgaatc aggtactttt ggactcaact       180
     tggaggtttc tagcacaagg gatggacaaa ctcgagttcg tgggatcaaa ggaaggactt       240
     ggagtatact cggcctatgt actcggctgg aggccgagtg gagcacacaa gggaraagca       300
     aggasyctac tcgrccaagr cactcggctg aagsccgagt ggtgcacttr aggaagaagr       360
     gaagctrctc gaccaagcca ctcggcctag acccgagtga tgtgaccaag aggaagccac       420
     tcgacttttc tactcggcct agacccgagt gctgctgcgc cgactttcct attttgtctt       480
     tttcccaatt agggcatcct aggattgcct ataaatagac ctcttatgtt tttgcccaaa       540
     atatctttgc tttgtctgct ggatattagg gttcttagat ttcttttgca ttttctggtt       600
     gttgtgttga gaatttggat ttgatttctt ctgcaaactt gtttatctta ttgagatcta       660
     tcatttgcta agtttataat gatttctggg ttttatgaat tttctgggtt ttgttctatg       720
     atgttcttca ttgttcttga gtagtcttct tcagagttct tgaggatggg ttaggtttag       780
     gtggattcct ctgttcttta gctagctaag tttataaatg catgattccc ttctgtttta       840
     ggagttctta atgctatttt ctttctgatc aattgaaaat tgatttcaga ctttctccac       900
     ctaacaagtg tttgatgaaa tgtctgaacc aactaatttc agagatttgt agattctagc       960
     ccaagacctt ggatgtttag actgcttatt gactttaata gattggtgtt taaagcctgc      1020
     tttgttatgt ttcatcaatg aaaattgaga ttaggaagtt ctaaagttat gagaatcatt      1080
     gtcacgaaag tggattgatt tggttttgaa tctattgtct agggatagct tgattgagtt      1140
     tgttagttag ctaatggatt gaggagtcca ctaagaccaa ttaccccatt cttaagagct      1200
     ctgtttcgtt ttattgtgca aaactcgtgt ttttagtact ctgttcgttt tgtttagttc      1260
     tcgtgcaaaa ttggtgtttt tagtattgta ctcgacctgt ttagthgttt gctcgaccga      1320
     gtgcttyact tagtgcttgg tttactttct tgttcttgca tttgacagtt cctggtcttt      1380
     agtttcattt ctgctcttgt tatttgagtt ctttatcttc tgcttagtat agttttgttt      1440
     ctgaatttga tttgcatgtt aacctgttgc ttaggtttag tagaaacaca ccaaacctat      1500
     tcacacttgg cttgacttag tattctctga tcacatcctg attgatagca attacaccca      1560
     tttggattga caccttaaat gctgcaatga cataagatgc atttagggaa ttgacacacc      1620
     gaaaaccctt gtatca                                                      1636
//
ID   ATHAT2      repbase; DNA   ; ATH   ; 3573 BP.
XX
AC   AL132953;
XX
DT   08-JAN-2001 (Rel. 6, Created)
DT   08-JAN-2001 (Rel. 6, Last updated, Version 1)
XX
DE   ATHAT2 autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; HAT superfamily;
KW   Autonomous DNA transposon; transposase; ATHAT2; Atac2.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-3573
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
RN   [2]
RP   1-3573
RA   Kapitonov V.V., Jurka J.;
RT   "ATHAT2.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
DR   GenBank; AL132953; Positions   34952   31380.
XX
CC   ATHAT2 is a fossilized HAT-like autonomous DNA transposon.
CC   There are at least two almost complete copies of
CC   the transposon fossilized in the genome. They are 93% identical
CC   to each other.
CC   ATHAT2 is flanked by 8-bp target site duplications.
CC   ATHAT2 has 14-bp terminal inverted repeats and encodes the
CC   656-aa ATHAT2p transposase.
CC   CDS join(349..414,742..1098,1204..1615,1697..1978,
CC   2041..2871,2960..2982)
CC   The ATHAT2 70-bp 5' and 140-bp 3' termini are ~70% identical
CC   with corresponding termini of the non-autonomous transposons
CC   ATHATN1-ATHATN5.
XX
FT   CDS           0..0
FT                 /product="ATHAT2p"
FT                 /translation="MEFLSSLSSQSPPSEASSNRSRMDSSPFPSNSDVGN
FT                 EKVTEPESDAANKRKDVQEDSGATSKPPKTKKPSQRSFVWDHYTRFEDNP
FT                 KRCKCNYCHRTYGCDSKDGTSNLKNHLRICKHYQAWSQKAKQTVFNNQGH
FT                 LQSGKVNLYAPHSRRTCMKDIVKMYVGMKASLKTWIATTNPRVSLTTDIW
FT                 TAKATVASYMVITAHFVDSAWKLRKLIIGFKYITDHKGATIARILLECLA
FT                 ECGIEKIFTITVDNETTNTSALKKFQETFSLRSNEAFVLEGEAIRNSVQY
FT                 VRSSTSRCDSFDQKVVSGKMTRGSLPLDIKTRWNSTYLMLKRAMEFRLAF
FT                 DKMEAEDKLYNDYFNEVDDGKARSGHLQELIGMQSRVASYKCYGEIVTIE
FT                 TNLVSLGNNFDRDLKIKAKAMLGKFVKYWDGTRNINVYLIVASVFDPRKK
FT                 MQFANMCFAKLYGKDTTDAKEMAEKVNNVLTSLFKEYSSRFQKTSSGSGP
FT                 SSQSTQTSITASQGEPSDLMSDSMGYERMDFAYKELVDEIGVDDGRDELD
FT                 VYLKEKVENPKTIIGLEWEVLSWWKLNCGRFPVLSAITKDVLAMQVSSVA
FT                 SESAFSNSGRVIEPHRSCLTHYMVKVLLCTEQWMKNVNHLGNKSVVTIKE
FT                 LLADIVELDNIEKEFDGNSA"
XX
SQ   Sequence 3573 BP; 1077 A; 581 C; 745 G; 1170 T; 0 others;
     taagcctggg cgtttaatcc gaatccgata aaccgaaccg catccgaact gggaaaatcg        60
     gattaaaaac cgaaccgaat ccgctcaatt aaccgttcgg ttattgattt ctatatccac       120
     ggttatcgga ttttatccga tccgaaccga aataatatgg ctatccgaaa ccaaccgaag       180
     aacttcttct atacactact ctttagcctt cgaagtctgg atccacttcc cttatgatga       240
     ttatcaaaca atatgattcg atccacttcc ctaatcttct tgattttcct agcaatacgg       300
     gatccacttc ctctagatta taaccataaa accctaagct ctttcaatat ggaattctta       360
     agctctcttt cgtcacaatc gcctccatca gaagcatcaa gcaatcgatc tcgggtatgt       420
     gtttgaactt caattcttct tcttcattag ctatcgtctt tgttctttga ttcttcttct       480
     tcattagaaa aaaaattgaa actcatttaa attgatttag tcatatagct aatgataaat       540
     tctttgtttg gattttaaaa atttgtgtat gttggagtta aattcttagt cgattctaat       600
     cctcttgttg tgtcaatgga tgtttgttga gtagcaagag tatatttttg attgtgagag       660
     tatagttttg agtagtgaac gtatatttag atggattctc attattctta tgttaaaact       720
     tctcattatt cttatgttta gatggattca tcaccatttc caagcaacag tgatgtgggg       780
     aatgagaaag tgactgaacc tgaaagtgat gctgctaaca aaaggaagga tgttcaggaa       840
     gatagtggag ctacttcaaa accacctaag acaaagaaac caagtcaaag gtcgtttgtc       900
     tgggaccatt acacgagatt tgaagataat cctaagagat gcaagtgcaa ctattgtcac       960
     agaacctacg gatgtgattc taaagatggg acttcaaact tgaagaatca tcttcgaatc      1020
     tgcaagcatt atcaagcatg gagtcagaaa gcaaaacaaa ctgttttcaa caatcaggga      1080
     catcttcaga gtgggaaagt tacataggag attttaagag aagcttcaaa tgagatgctt      1140
     gtgctgggag aattaccact ttctttcatt gaaagcgcgg cttggaaaca tttatgtgaa      1200
     aaggtaaacc tctatgcgcc acattctagg agaacttgta tgaaagacat tgttaaaatg      1260
     tatgtgggaa tgaaagcatc tctgaagact tggattgcga ctactaatcc aagagtctct      1320
     ttgacaacag acatctggac agctaaagct acagttgcta gttacatggt gattactgct      1380
     cactttgttg attctgcttg gaaattaagg aagctaatca ttgggtttaa gtacattacg      1440
     gatcacaaag gtgcaacaat agcaaggatt cttcttgagt gtttggctga gtgtggaata      1500
     gagaagattt tcactatcac agtggacaat gaaacaacaa acacttctgc tttgaagaaa      1560
     tttcaagaaa cattcagctt aaggagtaat gaagcatttg ttttagaagg cgaaggtatg      1620
     catgtgaggt gtgctgctca cataatcaat ttaattgtca aggagggttt ggttgaattg      1680
     ggtgatcatg tggcagccat acgcaattca gtgcagtatg tgaggtcttc tacttcaagg      1740
     tgtgattcat ttgaccagaa agttgtctca ggcaagatga ctagagggag tttaccgttg      1800
     gacatcaaaa caaggtggaa ctctacttac ttgatgctga aaagggctat ggagttcagg      1860
     ttggcatttg ataaaatgga agctgaagat aagttgtata atgactactt caatgaagta      1920
     gacgatggaa aagcaagatc gggccaccta caagagctga ttggaatgca gtcgagaggt      1980
     tagtgagatt tctgatcata ttctacaact ccactttggt cgtgtctgct tctaattcag      2040
     tagcttctta taagtgctat ggtgagatag tgactataga gacgaatttg gtgtcactag      2100
     gcaataattt tgacagggat ctgaaaatta aggctaaagc tatgttagga aaatttgtta      2160
     agtattggga tggaacaaga aacattaatg tttatctgat agttgcaagt gtctttgatc      2220
     caaggaagaa aatgcagttt gctaatatgt gttttgcaaa gctttatggg aaagatacta      2280
     ctgatgctaa agagatggct gaaaaggtca acaatgtttt gacttccttg tttaaggagt      2340
     atagtagtcg ttttcagaaa acatcaagtg gtagtggtcc atcatcacag tccactcaga      2400
     cttcgattac tgctagccaa ggtgagccct ctgatttgat gtctgatagt atggggtatg      2460
     agaggatgga ctttgcttat aaggagttgg ttgatgagat tggggttgat gatggtaggg      2520
     acgagttaga tgtgtatttg aaggagaaag tggagaatcc taaaactatc attggattag      2580
     agtgggaagt actttcttgg tggaagctca attgtggtag gtttcctgtt ttgtctgcaa      2640
     taactaagga tgtccttgca atgcaagtgt catcggttgc atctgaaagt gcttttagta      2700
     acagtggtcg agtcatagag ccacatagga gttgtttaac tcattatatg gttaaagtgt      2760
     tgttgtgcac agagcagtgg atgaagaatg tgaatcactt aggtaataaa tctgttgtta      2820
     ccattaaaga gttgcttgcc gacattgttg agctagataa cattgaaaaa ggtaaattca      2880
     tcccttatgc tctatttcaa ttctctctta atagttttaa ttgttcacag ttttaatttc      2940
     ttgtttttct tgattacaga gtttgatggc aactctgctt agaagactct tatcctcaaa      3000
     ctttttaatc ggctataagg taaattgttt taaacttgat gtttttgatt catgtatttc      3060
     atagattaag aagttaagta ttttgttgta tcaaggttca agaacatggt gaagtttgag      3120
     aatgcggcaa agaagaagct tgaggttgct gttgttggct tgttttcact ctctttcact      3180
     ttttttttta ctactttcca attgaattct gctacttctt cactctttaa gatgttatgg      3240
     tttacttttc tttcaaaact ttgatgtatt ggcatagttt atgcctcact ttggtttcaa      3300
     aaactttatg gtttgctttg ctatggtttc atttcatcta ctcatttttt gcatagctcg      3360
     ttttttcggt ttaagttcgg attaatatcg gttattcggg ttcaatcgga tgttaaatat      3420
     catattcata ccgatccaaa atccaaaata tctaaaccga aaccgatccg aattttataa      3480
     ttatccatat ggatattaga atctaaatcc aaaataaccg aaatccgaaa caaccaaacc      3540
     aaatccgatt cgataaccga acgcccagac cta                                   3573
//
ID   ATCOPIA83_I repbase; DNA   ; ATH   ; 4643 BP.
XX
AC   AB010694;
XX
DT   30-NOV-2001 (Rel. 6.1, Created)
DT   30-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Internal region of the ATCOPIA83 copia-like LTR-retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; reverse transcriptase;
KW   LTR-retrotransposon; COPIA superfamily; copia-like polyprotein;
KW   internal region; ATCOPIA83LTR; ATCOPIA83_I; the ATCOPIA83 family.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4643
RA   Kapitonov V.V., Jurka J.;
RT   "Internal portion of the ATCOPIA83 copia-like LTR-retrotransposon.";
RL   Repbase Reports 1(3), 10-10 (2001).
XX
DR   GenBank; AB010694; Positions   14350    9708.
XX
CC   ATCOPIA83_I is an internal region of the ATCOPIA83 copia-like
CC   endogenous retrovirus flanked by the 99% identical ATCOPIA83LTR
CC   long terminal repeats, and a 5-bp target-site duplication (AGATA).
CC   ATCOPIA83 forms a separate family of copia-like retroviruses
CC   present in the A. thaliana genome. There are two nearly identical
CC   copies of ATCOPIA83 found on chromosome 5. However one of them
CC   is a result of a ~14-kb duplication.
CC   ATCOPIA83 is most close to ATCOPIA26. There is a 74% identity
CC   between LTRs and internal portions of these two retroelements.
CC   ATCOPIA83_I encodes well preserved remnants of the ~1500-aa
CC   ATCOPIA83p copia-like polyprotein.
CC   ATCOPIA83p (nucleotides at positions 982 and 983 form a false
CC   frame shift; we have deleted them to produce this polyprotein):
CC   MSTELALTTSSSTTTQPRRTISPYDLTSGDNPGTLISKPLLRGPNYDEWATNLRLALKARKKFGFADGTI
CC   PQPDETNPDFDDWIANNALVVSWMKLTIHESLATSMSHLDDSHDMWTHIQKRFGVKNGQRIQRLKTELAT
CC   CRQKGTPIETYYGKLSQLWRSLADYQQAKTMEEVRKEREEDKLHQFLMGLDESMYGAVKSALLSRVPLPS
CC   LEEAYNTLTQDEESKSLSRLHDERNDGVSFAVQTTPRTRSLTKNKDSAIVCSHCGRLGHLAENCFKLVGY
CC   PPWQEKMRRNATSSSRNQSASMGRGSSVVPATSFKGKQSFGRGASANHVANIGESTTAATSSMSGSQLTE
CC   ADRVGISGLNDEQWKQLRQMLKERNFNSTNTKSSKFFLESWIIDSGATNHMTGTLEFLRDVCDMPPIMIK
CC   LPDGRLTTSTKHGRVYLGSSLDLQEVFFVDGLHCHLISVSQLTRAKSCVFQITDKVCIIQDRITLTLIGA
CC   GKQQNGLYFFRGTETVASMTRMDSSSQLWHCRLGHPSSKVLKLLSFSDSTGHAFDSKTCEICIKAKQTRD
CC   PFPLSNNKTSSPFEMVHCDLWGPYRTTSICGSNYFLTLVDNYTRAVWLYLLPSKQTAPMHLKNFISLVER
CC   QFSTKIKTIRSDNGTEFVCLSSFFVDHGIIHETSCVGTPQQNGRVERKHRHILNVARALRFQARLPIEFW
CC   SYCALTAAYLINRTPTPLLQGKTPFELLYNRPPPVNHIRVFGCICYVHNQKHGGDKFESRSNKSIFLGYP
CC   FAKKGWRVYNFETGVISVSRDVVFRETEFPFPASVFDSTPDSQLSPSNADQSFFLPSELQAPTPVSITTT
CC   LELTQSSSSTNLNDDNFHIPSDESSSVNEMSDNEDLNSPTTNESSPFLSPASPSLPLSPASLSLPLSPAA
CC   PSPSLPKIAEPEPEPELLGKGKRKKTQPVRLADYATTLLHQPHPSVTPYPLDNYVSSSQFSAAYQAYVFA
CC   ISLGIEPKSYKEAILDENWRCAVSDEIVSLENLGTWTVEDLPPGKKALGCKWVFRLKYKSDGTLERHKAR
CC   LVVLGNKQTEGIDYSETFAPVAKMVTVRAFLQQVASLDWEVHQMDVHNAFLHGDLDEEVYIKFPPGFGSD
CC   DNRKVCRLRKALYGLKQAPRCWFAKLTTALNDYGFIQDISDYSLFTMERNGIRLHILVYVDDLIITGSSL
CC   DVITKFKGYLSSCFYMKDLGILRYFLGIEVARSPAGIYLCQRKYAIDIITETGLLGVWPASHPLEQNHKL
CC   ALAFGDTISDPSRYRRLVGRLIYLGTTRPELSYAIHMLSQFMSDPKADHMEAALRVVRYLKSSPGQGILL
CC   RSNTPLVLIGWCDSGFDSCPITQRSLTGWFIQLGGSPISWKTKKHDVVSRSSAEAEYRAMADTVSELLWL
CC   RALLPALGISCNEPIMLYSDSLSAISLAANPVYHARTKHVGRDVHFVRDEIIRGTIATKHVSTTSQLADI
CC   MTKALGRREFDAFLLKLGICNLHTPACGGGGGG.
XX
SQ   Sequence 4643 BP; 1250 A; 1052 C; 956 G; 1385 T; 0 others;
     tggtatcaga gcaaaaccta aactactaaa gggtttttgt ttcttgattc tgtgatctgt        60
     caattctgct gcaagttata gttgtttcta aaattcgttt gtttccactt ctttgacaaa       120
     cttttctcac gatgagtacg gagttggctc ttaccacctc ttcctcgact accacacaac       180
     ctcgccgtac catctcacca tacgatctta cctccggaga caatccaggc accctaattt       240
     caaaacctct cttacgtgga cctaactacg atgaatgggc cacaaattta cgtttggctt       300
     tgaaagcaag gaaaaagttt ggatttgcag atgggacaat tcctcagccc gacgaaacaa       360
     atcctgactt cgatgattgg attgctaaca atgctcttgt ggtttcatgg atgaaactca       420
     ccattcatga aagcttagct acctcaatgt cacacctcga cgattcccat gatatgtgga       480
     ctcacattca aaaacggttt ggagttaaaa atggacagcg catccaaaga ctcaaaaccg       540
     agttagctac atgtcgtcaa aaaggaactc ccattgagac atactacggg aaactctctc       600
     aattgtggag aagcttggca gattatcaac aagctaaaac aatggaggaa gtaagaaaag       660
     agcgtgagga agacaagctg catcaatttc tcatgggtct agacgaatcc atgtatggag       720
     ccgtcaagtc cgctcttctc tctcgggtac cactgccttc actcgaggaa gcttacaaca       780
     ccttgactca agacgaagaa tcaaagtctt taagtcgttt acatgatgaa agaaacgatg       840
     gtgtgagttt tgcggttcaa actactccaa ggacccgcag cctcaccaaa aacaaagatt       900
     ctgcaattgt ttgttctcac tgtgggcgtc ttggtcatct cgccgaaaac tgcttcaaac       960
     tagtaggata tcctccttgg cttaagagaa aatgcgtcgg aatgctactt cttcctcacg      1020
     aaatcagtct gccagcatgg gtcgtggctc ctctgttgta cccgccacat ctttcaaagg      1080
     aaaacagagt tttggtcgtg gtgcatcagc caatcatgtc gcaaatatcg gagaaagtac      1140
     gactgctgca acaagctcga tgtctggttc tcagttaaca gaagctgacc gtgtcggaat      1200
     aagtggcctg aacgatgaac aatggaagca attgagacag atgcttaaag aacgaaattt      1260
     caattccacc aataccaaat ccagtaagtt ctttcttgaa tcttggatca ttgattccgg      1320
     tgcgacaaat cacatgaccg gtactcttga atttttgcgt gatgtttgtg acatgcctcc      1380
     gattatgatt aaacttcccg acggaaggct tacaacatct accaaacacg gacgtgttta      1440
     tttaggctca tctttggatc ttcaggaagt gttttttgtt gacggtctac attgtcatct      1500
     aatctcagtt tcacagttga ctagagcaaa gagttgtgtt tttcagataa ctgacaaagt      1560
     gtgtattatt caggaccgca tcactctaac gctgattgga gctggtaagc agcaaaatgg      1620
     attgtatttc tttcgaggaa cggaaacagt ggcatcaatg acacgcatgg actcgtcttc      1680
     tcagttgtgg cattgtcgtc tcggccatcc ttcctccaaa gttttaaagt tgttatcgtt      1740
     ttcagattct actggtcatg cttttgattc aaagacttgt gagatttgta ttaaagctaa      1800
     acaaacaagg gatccttttc ctttgagcaa taataaaaca agttctcctt ttgaaatggt      1860
     gcattgtgat ctttggggtc catataggac tacatcaatc tgcggttcta actattttct      1920
     cacacttgtt gacaactata cacgggctgt ctggttatat ctcctacctt cgaaacaaac      1980
     agctccgatg catcttaaaa acttcatatc tctggttgag agacagtttt ctactaagat      2040
     aaagacaatt cgcagtgaca acggcacgga gtttgtttgt ctctcttcat tttttgttga      2100
     ccacggtatt attcatgaga cttcttgtgt ggggacgcca caacaaaatg gtagagtaga      2160
     acgcaagcat agacacattc tcaatgtcgc acgtgctctt cgttttcaag ctagattacc      2220
     tattgaattt tggagttatt gcgcactcac tgcggcttac ctcatcaata gaactccaac      2280
     tccattactt caaggcaaga caccatttga gcttctatat aatcgtcctc ctccggttaa      2340
     tcatattcgg gttttcggtt gtatttgcta tgttcataat caaaagcatg gaggtgacaa      2400
     atttgagagt agaagtaaca aatccatttt tcttggatat ccatttgcga agaaaggctg      2460
     gagagtatac aattttgaaa cgggtgtgat ttctgtctct cgtgacgttg ttttccggga      2520
     aacagaattc ccttttccag cctctgtttt tgactccacg ccagactcgc agctctcacc      2580
     ctccaacgca gatcagtcat tttttttacc atcagaatta caagctccta caccggtcag      2640
     tattactaca actctggaat taacacagtc atcgtcctct accaatctca acgatgataa      2700
     ttttcatatt ccctccgacg aatcaagctc tgttaatgag atgtctgaca atgaggattt      2760
     gaattctcca actaccaatg aatcatctcc gttcttgtca ccggcatcac cgtctctgcc      2820
     tttatcaccg gcatcactgt ctctacctct atcaccggca gcaccctctc cgtctctgcc      2880
     aaaaatagca gaaccagaac ctgaacctga actacttgga aaaggaaaac gcaagaaaac      2940
     acaacctgtg aggcttgcgg attatgccac tacattactt caccaaccac acccgtcagt      3000
     gactccatac ccactggaca actatgtatc aagctctcaa ttctctgctg cttatcaagc      3060
     ttatgttttt gccatatctt tgggtattga accaaagagc tacaaggaag cgattcttga      3120
     tgagaattgg cgttgtgcag tgtctgatga gattgtctct cttgaaaatc ttggtacatg      3180
     gacagtagaa gacctacctc ctggtaagaa agcattgggc tgcaaatggg tgtttagact      3240
     aaaatacaaa tcggatggta cgcttgaaag acataaagca cgtttggtgg ttctcggtaa      3300
     taaacaaacc gaaggcattg actactccga aacgttcgct cctgtcgcaa aaatggtcac      3360
     cgttcgtgct tttcttcaac aagtagcatc attagactgg gaagttcacc aaatggacgt      3420
     tcacaacgca tttctacacg gtgatcttga tgaagaagtt tacatcaaat ttcctccggg      3480
     ttttggtagt gatgataatc gtaaagtgtg tcgcctgcgc aaagctttgt atggattaaa      3540
     acaagctcct cgatgttggt tcgccaaact tactactgct ttgaatgatt acgggttcat      3600
     acaagacatc tctgattatt cgttatttac catggagaga aacggcatcc gtttacatat      3660
     tcttgtctat gttgatgact tgatcatcac aggctcttct ctcgatgtca tcactaagtt      3720
     taaagggtat ttaagctcat gtttctacat gaaggatctt ggtattttgc gatacttctt      3780
     gggaatcgag gttgctagga gtcccgccgg gatttacttg tgtcagcgta agtacgccat      3840
     tgatattatc acagaaacgg gtttgcttgg agtctggcct gcatcacatc ctttggaaca      3900
     gaaccataag cttgctttag cttttggtga cacgatctcg gatccttctc ggtatcgtcg      3960
     tcttgttggc agacttatat acctcggcac cacacgtcct gagttgtctt atgcaattca      4020
     catgctttcc caattcatga gtgatcctaa agccgatcat atggaagctg ctctcagggt      4080
     cgttcgttat ctaaaatcaa gtccaggtca aggtattctt ttacgctcaa atacaccttt      4140
     ggtactcatt ggttggtgtg actcaggttt tgattcttgt ccgattacac aaaggtctct      4200
     aacgggttgg tttattcaac tgggaggctc tccgatctct tggaaaacca agaaacatga      4260
     tgtggtttct agatcctcag ctgaagcaga gtatcgtgct atggccgaca ccgttagcga      4320
     gcttctttgg ctgcgggctc ttcttccagc tttaggtatc tcgtgtaatg aacccatcat      4380
     gttgtattct gatagtcttt cggctattag tctagctgcc aatcctgttt atcatgcacg      4440
     tacaaagcat gttggtcgcg acgtacactt cgttcgtgat gaaattatac gaggtaccat      4500
     tgccaccaaa cacgtctcca cgacatctca actagcagac attatgacta aagcattggg      4560
     tcgtcgtgag tttgacgctt ttcttctcaa gctgggtatt tgtaatctcc atactccagc      4620
     ttgcgggggg gggggggggg ggg                                              4643
//
ID   HELITRON1   repbase; DNA   ; ATH   ; 15810 BP.
XX
AC   .
XX
DT   31-MAY-2000 (Rel. 5.8, Created)
DT   31-MAY-2000 (Rel. 5.8, Last updated, Version 1)
XX
DE   HELITRON1 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; ATREP; helicase; replication protein;
KW   HELICOP superfamily; HELITRON1.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-15810
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON1.";
RL   Direct Submission to Repbase Update (00-MAY-2000).
XX
CC   [1] (Consensus)
XX
CC   HELITRON1 is a DNA transposon related to the HELICOP transposons
CC   in the A.thaliana genome. It encodes a DNA helicase-like
CC   1697-aa protein, ATHP2, putatively involved in transposition.
CC   HELITRON1 encodes also proteins ATHP1 and ATHP3
CC   related to the replication protein A.
CC   There are several copies of HELITRON1 in the
CC   genome; they are ~98% identical to the consensus sequence.
CC   Approximately 2% of the A. thaliana genome belongs to molecular
CC   fossils of nonautonomous elements transposed recently (<10 Myrs)
CC   by autonomous HELITRON1-like elements. ATREP1-ATREP12 are families
CC   of nonautonomous mobile elements transposed by HELITRON1-like
CC   trasnsposons. All these elements share the same 5'-ATC and
CC   CTAGT-3' termini, the TA target site, and they don't generate
CC   duplications of the target site.
CC   The ATHP1 protein:
CC   MAATFAYLKDVRPYKNAWRVQVKILHSWKQYTSNTRETIELVISDEYGKKMHATVKKELV
CC   SKFVHKLIVGEWVFIEIFGLTYASGQFRPTNHLYKMAFQVRTEVMGCASVSDSNFLTLAP
CC   FSKIQSGELNPHMLVDAIGQIITVGELEELEANNKPTTKIDFEIRDQMDERMQVTLWGTY
CC   AQQVYRACQESEGKNVIFLIRFAKIKSYKGIFSFFVPIPFLSILHDLWSLKCYETAGVKS
CC   LSNSFDASQVHVNPDFPEAHHFSQTLPNDGAICVFRARVPRFEMVAVKRIDYSEYTRNTI
CC   EDLLSSTEVGKVRVLCTIYAIDTDWAWYYISCKTCNKKVNHIHAGVNGVNNKGKKPRFWC
CC   DTCKSVVTNVVSRYMIYAKVMDSTGEAKLLLFDSICSEIIGESATSVLNGSVDEIEDPED
CC   LPDSVKNLIGKTFLFLVWVEKDNISDGKEIYKVSKVLLKDGLLEEQLLEDSAEHVNPASI
CC   VSGDQVLLMLENGNGSPDSTTPSSKRVYARETSGSEGSSSSKKVCVVPLDLEKSLSENAE
CC   HGVALNPQVADSKEVTVPTEVKTSKVPVETENDQALVPATVVVKQEVKKEMARNMATNWV
CC   ICVKVLCIWDHPPNVNGDVTTMILVDAKHHRIVATIPRLNLREKFRRVLQEGFWFNISQF
CC   RVIPSTHRVETWDTVVFRMSELVKSDFTDYLFPNELEDSATDNVVDVTDAIGVVASVSSI
CC   KRFPYVCNKGETDYEARYVSFELMDNWEQKLKCVAVGSCCEEFVTKWSRRITRPTYNYEP
CC   VVCVVRFWRIASIDGENVLTSEFGCSRLHIDPSFPYFDLASYLRSFKDADDQEVTMEPVT
CC   EA
CC   The ATHP2 protein:
CC   MSCRRVAAAAPGDVTTTAISDDPIHPFIVIGRAIHLPPFNFIRLATLLNLIRLATHLARC
CC   LRTILRSLYHKVTMLVCSFERSGLTSIGRKNLHQPKTASTIPFSDLTKPNLQASPQNLDA
CC   SMTPATAYTVNTGQELSNPYSCISNQTQTPVMSTEYSHIRNLQAEFEKASTSATNPRAEA
CC   TINSDTSSDDENMANMMFDGAVYESDTDVDQNYSLSSTDDESADTTTIQTESESMANVST
CC   HEVEDIVSQLSENDIELDTFSSQMDIFMIPTESTQTANVPESAPKKRGRPRLAVTKQMRM
CC   KQIRQQNKPGYLDHGDPTFKCKYCGAMMWYDERIRKKETNKESGFTLCCGEGSVKLPFLK
CC   ESPDLLKNLLSGNHPLSKHYRDNARTFNMVFAVTSLGGKVDKSMPKGRGPAMFRLQGGNY
CC   HLIGSLKPTPGDYAKYSQLYIVDTENEVENRAIVIGKGKNAKPASGKPNLDKNLIEVIIK
CC   MLNRCNPYVRRFRTARERIQTNDEEPFHMRIIADRQGVEGRTYSMPTTSEVAALIPGDFR
CC   HGMPDRDIVIGKKSNGHLKRINQIHISYLALQYPLIFCYGEDGFRPGIEKCSKSKSKKKN
CC   KKCISMRQWFAFRIQEREVECQTLLRSKRLFQQCLCDAYTTIESNRLNYIKFNQSKLRCE
CC   NYTSVKEAAAAGATTMEEEGNQLLIPASFTGGPRYMVQSYYDAMAICKHYGFPDLFITFT
CC   CNPKWPEITRYCDKRGLNPEDRPNIIARIFKIKLDSLMNDLTVKKMLGKTVASMYTVEFQ
CC   KRGLPHAHILLFMHAKSKLPTADDIDKLISAEIPDKEKEPDLYEVIKNSMIHGPCGSANV
CC   NSPCMVDGECSKLYPKKHQDITKIGSDGYPIYRRRKTDDYVEKGGIKCDNRYVVPYNKKL
CC   SLRYNAHINVEWCNQNGSIKYLFKYINKGPDKVVFIVEPTQQTTAGDSETPQQEQGSAEK
CC   KKNEIKDWFDCRYVSASEAVWRIFKYPIQHISTPVQKLSFHVEGKQPAYFDPKSNIEDVL
CC   ERVANADSQFMAWLTLNRRNAVGKNGKRARECLYAEIPAYFTWDGENKSFKKRTRGFSIG
CC   RIHYVSRKMEDEYFLRVLLNIVRGPTSYAEIKTYDGVVYKTFKEACFARGILDDDQVFID
CC   GLVEANLTLTETEIKNYTLQEIEKIMLSNGATLEDIDEFPKPTRDGIDNSNRLIVEELRY
CC   NRESNLKEKHEEWKQMLTPEQRGVYNEITEAVFNNLGGVFFVYGFGGTGKTFIWKTLSAA
CC   IRCRDQIVLNVASSGIASLLLEGGRTAHSRFGIPLNPDEFSVCKIKPKSDLANLVKEASL
CC   VIWDEAPMMSRFCFEALDKSFSDIIKNTDNKVFGGKVVVFGGDFRQVLPVINGAGRAEIV
CC   MSSLNASYLWDHCKVLKLTKNMRLLANNLSETEAKEIQEFSDWLLAVGDGRINEPNDGVA
CC   IIDIPEDLLITNADKPIESITNEIYGDPKILHEITDPKFFQGRAILAPKNEDVNTINEYL
CC   LEQLHAEERIYLSADSIDPTDSDSLNNPVITPDFLNSIKLPGLPNHSLRLKVGAPVMLLR
CC   NLDPKGGLCNGTRLQITQLCTQIVEAKVITGDRIGHIVLIPTVNLTPTDTKLPFKMRRRQ
CC   FPLSVAFAMTINKSQGQSLEHVGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDGKL
CC   QKQTTNVVFKEVFQNID
CC   The ATHP3 protein:
CC   MAERNYIPDLNLHRNNHIIYVKILSMWDLQSMIKPTPSTMILCDVKGNKIDARIPWGEYM
CC   SNFKTSLFEGKWYYLQHFRLKRSTTIPKYTDFHYEIEFMWHTKMWAVSDRAEQSSLKFIH
CC   ADEVNGESEDHVVDVIGVITTVSTVSSFPYCCPEGETDYDARYVIFTIRDNHERIITCVA
CC   RGSACESFLSKVYRLIGSKTYNYEPITTVLRFFRTSMFKGSKALISEYGCSRVFIEEEFP
CC   DFDVSSEPVGNVEGRIEYVAKD
CC   There are several other families of HELITRON1-like transposons
CC   in the A.thaliana genome that are only 60-70% identical to the
CC   HELITRON1 consensus sequence. Conservation of both helicase-
CC   and relication-like proteins in these highly divergent families
CC   shows (Kapitonov,V.V.) that the proteins are functional elements
CC   of the HELITRON1-like transposons.
XX
SQ   Sequence 15810 BP; 5054 A; 2664 C; 2818 G; 5272 T; 2 others;
     atctacatat acatttttgg ggacgatttg tgtcgaaaaa tcctttttca atttcgatat        60
     tgtatgttta gtccctacaa aatcaatcag acaagatatt ttctttagga caataaccaa       120
     atttttgctc aactattcac gtattgcact aattacttgc ctaaacatat aaattgttaa       180
     gtactaccct cataaattgc acacattaat cccttgaaac tctactaatt caatattaca       240
     cgaaataata tttcctaaaa atccgaacaa ccaaataact aaccatatct ttacttactt       300
     cattccaaaa tctcgaaata tttactacac tcttaccaaa tattcatatt tcgatatcac       360
     atttctataa gttaaacgat tattaatcat gcattaattc cataaacctt aaaggaaccc       420
     tcaatatatc atataatctt acatatggta tagtcaatat atttttacac attctaaaaa       480
     tcatcatcaa ttcgaaattc caatatatca cctcgaaaat taaatttcgc caactataat       540
     attatccaaa ttgttatgga ttattgcctt ccaaaaattt tatccgatcg aatcatctat       600
     tctctccact cctcattcat agcaattctg tttcctgatt tacatatatc accttaacta       660
     caaaatcttt taacattcgc ttgccagtca agacataatc taaatcacgc aatattccat       720
     cttctaaacc atccaaatca ttctgttttg aatgtacaag cgtaaaaata agggcaaatg       780
     catctaccat atctcgacag tttgattcag aatcaaatca aaatctaaat acggcatttc       840
     gattattatt ttgcacttat gatactcaag catattccta ttctaaacca ttcagaatca       900
     ttctgtttct aaagaattta cgctctaaat ctttgcaaat aaatgtttaa agattcactc       960
     ggctactata aatacgcttc tcatatcatt ccatttcatc atcactcaca ccgcaaacga      1020
     gagatcaaag caattataca ttttgagaaa tggctgctac attcgcatac cttaaagacg      1080
     tgaggcctta caaaaacgca tggagagtcc aggtcaagat tcttcactct tggaagcagt      1140
     acacaagcaa cacccgtgaa accattgagt tggtcatctc tgatgaatat gtaagaatta      1200
     ctgttatcta tgcaaaattt acgtttacat atacacaagt gctaatatag atttctgttg      1260
     tctttgtcat aaggggaaaa aaatgcatgc taccgtgaag aaggagttgg tttctaagtt      1320
     tgttcacaag cttattgttg gcgaatgggt cttcattgag atttttggtc ttacctatgc      1380
     gtctggccag tttcgcccaa ccaaccatct atacaagatg gcgttccagg ttagaactga      1440
     agtcatgggt tgtgcttctg tctctgactc caacttcttg actttggcgc cattttcaaa      1500
     aatccagagt ggtgagctta accctcacat gttggttggt gagttttctg attctatatt      1560
     atatttttgc tttattccat tcacttgcta tcattagatt atgaacacag tcatgtttca      1620
     ctgcagatgc tattggccaa atcattactg ttggtgagtt ggaggaactc gaggctaaca      1680
     ataagcctac aacaaagatt gactttgaga tcagagatca aatgtaatgt ctatatctta      1740
     ttagtttatt gcgatcttat ttgtttattg cttatcaaag aaagtgtttg tttcgattca      1800
     tttgttctca tagggatgag agaatgcaag ttactttgtg gggaacatac gctcagcagg      1860
     tttacagagc atgtcaggaa tctgagggaa agaatgtgat ttttctcatt cgttttgcca      1920
     aaattaagag ttacaagggt atattcagtt tctttgtacc tattcctttt ctttccatac      1980
     tgcatgatct atggtcactt aaatgttatg agactgcagg tgtgaagagt ttatccaact      2040
     catttgatgc atcgcaagta catgtcaatc cggacttccc tgaagctcac catttcagtc      2100
     aaacgtaaat gcatctactc tcaacacaat ctacttttag ttgacttctt tatgtgctat      2160
     tgatcatctt tttatccaaa tgcagacttc caaatgatgg tgctatttgt gtgttccgtg      2220
     caagagtccc acgttttgag atggttgcag ttaaaaggat tgactacagt gagtacacaa      2280
     ggaataccat tgaagatctg cttagctcga ctgaggttat attcagctaa cttatctcaa      2340
     agtttagaaa tctaactatc atcagtatct aatgtgttct gatattttat ataggttggt      2400
     aaagtcagag ttttgtgcac aatctatgca attgatacgg attgggcttg gtattacatc      2460
     agctgcaaga catgtaataa gaaagtgaat catattcatg ctggtgttaa tggagtaaac      2520
     aacaagggta agaagcctag attctggtgt gatacatgca agtctgttgt aaccaatgtg      2580
     gtctctaggt aaatacattt ctttgaagat tatatttaca tagcatacta ctttgaaata      2640
     ttttattgga actgtgtgta tagtttggaa attaagttcg taaaatttta ttatatgcaa      2700
     ggtacatgat ctatgcaaag gttatggata gcactggtga agccaaattg cttctgtttg      2760
     attcaatttg ctctgagatc attggcgagt ctgcaacctc tgttcttaat ggatctgttg      2820
     atgaggtgtg tttcttaaag ttgtcccgtg tctactttat gtatactgac atataaatat      2880
     atagagaact caaatagcta tttacactct tccagattga ggatccagaa gatcttcctg      2940
     attctgtaaa gaatctgatt ggtaagacat ttctgtttct ggtgtgggtt gagaaagaca      3000
     acatctcgga tggaaaagaa atctataagg tttcaaaggt gcttctgaag gatggactac      3060
     tagaggaaca attactagag gattctgctg aacatgtgaa ccctgcatcc attgtgtctg      3120
     gtgatcaggt atttcacaca acatttcaag ttacattctt cattacaatc ataaagttca      3180
     taagagtttt ggcaatttct aactctatat attgcaggtt ctacttatgc tggagaatgg      3240
     taatggatcg ccagactcta cgactccatc ttcaaagcgt gtttacgcta gagaaacgag      3300
     tggctctgaa ggttcttcaa gttcaaagaa ggtgtgtgtt gtaccattag acttggaaaa      3360
     gtctttatct gagaatgctg aacatggagt tgccttgaat ccgcaggtgg ctgattcaaa      3420
     agaagttact gttccaactg aagtcaaaac atcaaaggtt cctgttgaaa cagagaatga      3480
     ccaagcactt gtcccagcta ctgtcgtggt gaaacaagaa gtcaagaaag agatggctag      3540
     gaacatggct actgtaaggg tcaaagtgga gaagaacaag tgatctactt atctatttct      3600
     tttaataagt gatgcttctt gaactgtgtt tggtcactga agctatgttt tgaatttttt      3660
     tttttttttt attggattat gttcgtgttt ttgttttcga agttattgga tttcatgttt      3720
     tggattatgt ttcatcttta attttggagt taatcttaaa attattttat taagcttata      3780
     tgttcgatca ttactaattt tgtagccatc tatatgaaaa catgcaatct cagttataat      3840
     gttacagtta gagggtccaa agaaacttac catttcatgt tgtatatatg tattcgactg      3900
     gcttcagact tttaatgaat gactttagtg tatacctgta tcaataagtt aaagtttcat      3960
     taacaatttg ctattccaat cttttagata taatatagat ttcatactat attataaaat      4020
     gaaactatac aaaagatcaa atcaatatta tgtcaatatt atgtcaatct tttgacaatc      4080
     ttacatatag attcactatg attaacatct ataactgtct agatattagg aaattgtctt      4140
     attcgtaatc attatacatc tatgtctacg atatcttatt agattttctc gatatgtcat      4200
     attgacgtca tcatcgagaa cccgcggaac gattcgtatt ttcttatttt aaaaaacatc      4260
     tgccattcat tgtatctttt caacttatat atatattgag taactgttcc ttttcgatct      4320
     caaccctaaa agataaagca taaacattaa atccaaagag agacatccgt ggcttatatt      4380
     cacaaactcg aagatttgaa cttgatgaac aatcagaatt gggttatatg cgtgaaagtt      4440
     ctctgtattt gggatcatcc tccaaacgtg aacggtgatg ttacaaccat gattttggtt      4500
     gatgcaaagg ttagtctttc aaattcatct gctcttttag atcgtttttt tttgtggctt      4560
     ggtctattgc atgtcatcaa aatatcttgc gggttctact tagtcttttt attttgtcaa      4620
     cttaacagca tcacagaatc gttgcaacca tacctagatt gaatttgagg gaaaaattca      4680
     ggcgagttct ccaggagggt ttctggttta acatctctca gtttcgtgtg attccctcta      4740
     cacacagagt agaaacgtat gtgttgaacc gtctccatat catgttcaga tgggatactg      4800
     tagtgttcag aatgtcagag ttagtgaaat ctgatttcac agactatctt ttccccaatg      4860
     aacttgagga ctctgctaca gacaatgttg ttgatgttac tggtatgttt ataacgatcc      4920
     taattcttta gatcatttca tgagtttata tttgagtact ctgctgcaga caataactag      4980
     cttttgattt tttgttttca tagatgctat tggtgtggtt gcaagcgttt cttctatcaa      5040
     gaggtttcct tatgtctgca ataagggtga gaccgactat gaggccagat atgtttcttt      5100
     cgagcttatg gataattggt aagtttataa gttatagatt taggattagt tgatctagct      5160
     tgcagacttt acatttagat tattgcgtgt gattatttac cacagtctac caatggtaca      5220
     gggaacaaaa actcaagtgt gttgctgttg gttcatgctg tgaagagttt gttaccaagt      5280
     ggtctaggcg tatcactaga ccaacataca actatgaacc agttgtatgt gttgtgcgct      5340
     tctggagaat tgcttcaatt gatggttagt attctaaatc tgctagataa ttgtattgag      5400
     ttgtgtccca tgaaacctgt gtttacattt aaattatgtt ctgttttgac aaatgaaacc      5460
     tgtgtttttt ctgtgtgtaa ggtgaaaacg ttttaacgag tgagtttgga tgttcccgtc      5520
     tacatataga cccaagcttc ccttactttg atcttgcaag ttatctgtaa gtctagcaat      5580
     tggttttaaa tttctgtagt ttacaattaa gaacagttac ttagttttat aatctattgt      5640
     ctctgtacca ggcggagttt caaagatgct gatgatcaag aagtgacaat ggaaccagtt      5700
     actgaagctt gaagctattt gggtcggttt gttcggtttt gggagaaatt cggttttaat      5760
     tttttttacc gaatagaccc aaattaaaat tcggttcggg tcggttcgga agtcggttca      5820
     ttcgggtcgg ttctagaaat tgtgttccga acttaaaacc aaacaaaaat ttattcggtt      5880
     tctacggttt ttaattcggt ttagatattt aaaaaaaaaa ttacactacc aaaaatccta      5940
     atccaaacaa attacccact acaaattaat aaaaagccca aaatacaatt caaaaaagcc      6000
     caaaacaaaa actaatagcc caaccctaga aaatattagg gttttgacca aaagatatga      6060
     gctgccgaag ggttgcggct gcggctccag gtgacgtaac gacgacggcc atctctgatg      6120
     atcctattca tcctttcatc gtcattggcc gtgctattca tcttcctcct ttcaacttca      6180
     ttcgccttgc tactctttta aacctcattc gccttgctac tcatcttgct cgttgccttc      6240
     gtacaattct tcgttcttta tatcacaaag taacaatgct tgtatgtaag gatgacgaga      6300
     gcctatgatg ttttggatcc aatttataaa tcaaaagaag aagcaacgaa gaaagaagag      6360
     cgtacggaga tgaagtgata aagtagaata gaagagatga gatatttgtt tagatgtgag      6420
     aagcaagatg agctttctcg agaataagag gcggagccga agcgaagaag ataaacaaat      6480
     tagggtaact tagttaggtt tacacttata tatggctcct attaatggac ttaggtttag      6540
     agtaataaac cgatcggtcc gattaccgaa ccgacccgaa ccgagtaccg ttgcaacaaa      6600
     ttaattcaac cgatcagttt agacttctct cttcggttta cgccgaaacc cgaaattttc      6660
     gggttaatca gttcggtttc ttcggtttac tccgaactag ttgttatgtt tttagtactt      6720
     tttaacatta tgttatgttt ttggattgaa acatatctat tcctatctta taacttttat      6780
     gatattgtgt tctttaaagt attcaattct taaattttaa tttcgtttta acatatatga      6840
     tattgtcact aatttacaaa aataattata cctgtaacag attcagaaca ttagcagaat      6900
     attggttctt ggagaatcat taaatccaaa atatatgaca gttgagaaag gaaaaaatat      6960
     attaccaact tcgatttggt actccaaatt ggttacataa tttgtaatcg tctggtatat      7020
     tgtgtagcaa agtaaatata ctttatgtag aaaatgcgag aacagagcaa gttgatatat      7080
     ttactcacct accaaatatt tccttaacta acaaacagat cctctctaat caagtatgga      7140
     ctctattaca tttactttca acaattctat aaaatcttat accagttatc ttaaatcact      7200
     caatactcat gacagtctag agtattgaaa tgggaaaaaa aaacagccat gctctgtttg      7260
     atctaatttc acctccaccc tcagagaaga gaccacgtat aggtcaaata acagcttcac      7320
     aaagccaact tactcagcgt aatggatcta attctaatgg ttatgtgtct attagatcag      7380
     ttttcaatac agttttcaga gatatcacta atttgattca gcaacttcta tacagtattc      7440
     acatggtact gtcattacta tacaatatcc aactttcaga ttctatctgc tttacaagat      7500
     ttgcaaatgg ttgtcacagt tacttagaat gtgtttgaac tactcgcagg ttcatttgaa      7560
     agatcaggac ttacctcgat tggcagaaaa aatttgcatc agcctaagac agcttctact      7620
     attccattta gtgatctcac caaaccaaat cttcaggcat cacctcaaaa tttagatgca      7680
     tcgatgacac cagctactgc atatacagtg aacacaggtt agttattcta tatatatctt      7740
     ttagttctcc aaactactct gtctattatg taatttttat cttttaaata tccgaatcat      7800
     taatctaaat cttattttat gtattacaag gacaagaact gagtaatcca tattcatgta      7860
     taagcaacca aacacagaca ccagtgatgt caacagagta ttctcatata cgaaatttac      7920
     aagcagaatt tgagaaagca tcaacatctg ctaccaatcc gagtaagaat atataggttt      7980
     acaaacattt ctcttaaagt atcattttat ataagttgtg ttaatttata aattttcgat      8040
     gtgatcatag gagcagaagc tacaatcaat tcagatacta gcagtgatga tgaaaacatg      8100
     gccaatatga tgtttgatgg tgcagtatat gaaagtgata ctgatgtgga tcaaaattac      8160
     tctcttagta gcactgacga tgaaagtgca gacacaacca caatccaaac agaatctgaa      8220
     tcaatggcta atgtatctac tcatgaagta gaagacattg tgtcacagtt aagtgaaaat      8280
     gacatagaac ttgatacatt cagctcacag atggatatat ttatgattcc aacagaatct      8340
     actcaaacag caaatgtccc agaatctgct cctaaaaaaa gaggtcgtcc aagattggct      8400
     gtaaccaaac aaatgagaat gaaacaaatt agacaacaga ataagccagg tattgtttgt      8460
     tatctaaatt cttcattgtc atacatttat ctcagatatt gtaatgcaaa cccaaattat      8520
     agttgtttca ggttatcttg atcacggtga tcctacattc aagtgtaagt attgtggtgc      8580
     tatgatgtgg tatgatgagc ggattagaaa aaaggagaca aacaaagaat ctggtttcac      8640
     tctttgttgt ggagaaggaa gtgtcaaact tccatttctg aaggagtccc cagatcttct      8700
     caagaacctc ctctcaggaa accatccact ctctaaacat tacagagaca atgctagaac      8760
     ttttaatatg gttttcgcag tgacctctct tggtggtaaa gtagataaat ctatgcctaa      8820
     aggtagaggg ccagccatgt ttagattgca aggtggaaat taccatttga ttggtagttt      8880
     aaaacctact cctggagatt acgctaagta ttcccaacta tacattgttg atactgagaa      8940
     cgaagttgaa aacagagcta ttgtcatcgg gtaacatagc tcatatctta catgctttac      9000
     atgtctgttt aggttatgca ctgatatgga tttaaaaata gtttactgtt gtttttcatc      9060
     taatgtagca agggaaaaaa tgctaagccg gcatcaggaa aaccaaattt ggataagaat      9120
     cttattgaag tcattataaa gatgcttaac cgttgcaacc cttacgttag aagatttagg      9180
     acagccagag agaggattca aacaaatgat gaagagccat ttcacatgcg tattatcgca      9240
     gatcgtcaag gtgttgaggg caggacatat agtatgccta ccacatcaga ggttgcagcc      9300
     ttgatccctg gagattttcg acatggcatg cctgataggg acattgttat aggaaaaaaa      9360
     tcaaatggtc acctaaagag gattaaccag attcacattt cctatttggc tctgcaatat      9420
     ccactaatat tttgttatgg cgaagatggc ttcagacctg gaattgagaa gtgttctaaa      9480
     tcaaaaagta agaagaagaa taagaagtgt atcagcatga gacaatggtt tgcattccgt      9540
     attcaagaga gggaagttga gtgccaaact ctattacgtt caaagaggtt gttccagcag      9600
     tgtctctgtg atgcttatac cactattgaa tctaacagat taaactatat caagtttaat      9660
     cagtcgaaac ttcgatgtga aaactacaca tctgtaaaag aagcagctgc agctggagca      9720
     accactatgg aagaagaagg taaccaacta ctgattccag cttcattcac tggtggtcct      9780
     agatatatgg ttcaaagcta ctatgatgca atggctatct gtaaacatta tggttttcca      9840
     gatcttttca tcacttttac ctgtaaccca aagtggccag agataacaag atactgcgat      9900
     aaaagaggtt taaatcctga agacagacct aacattatag cccgtatttt taaaatcaaa      9960
     ctggattctc taatgaatga tttaactgtg aaaaagatgc ttgggaagac tgttgcatgt     10020
     aagtatggtt tagtatacta cattactatt tatcaaaatc atctaattcg aaagtactca     10080
     ttctgttttg tttgtgcttg cagcgatgta tactgttgag tttcagaaaa gaggcttgcc     10140
     tcatgcacac attctcttat tcatgcatgc taagagcaaa ttaccaacag cagacgacat     10200
     tgataaactt atttctgctg agattcctga caaagaaaaa gaaccagatc tatacgaagt     10260
     tatcaaaaac tccatgattc acggtccatg tggttcagca aatgtcaatt ctccatgtat     10320
     ggttgatgga gaatgttcta aactttatcc caaaaaacat caagatataa ccaagattgg     10380
     tagtgatggt tatcctattt atagaagaag aaaaactgat gactatgttg agaagggtgg     10440
     tattaaatgt gacaataggt atgttgtgcc ttataacaag aagctttctc ttcgttataa     10500
     tgctcatatc aatgtcgaat ggtgtaacca gaatggctcc attaaatact tattcaagta     10560
     tatcaacaaa ggaccagaca aagttgtctt catagttgag ccaactcagc agactacagc     10620
     tggtgactct gaaacgccac agcaagaaca aggttcagct gagaagaaga agaacgagat     10680
     caaagattgg ttcgattgca ggttagtcta tttctttgtt atttcttaat tatttggttt     10740
     ggtttcatat tgaataaaaa aatcattcta atacataatg aattgtttgc agatatgttt     10800
     ccgcatctga agctgtttgg agaattttta aatatccaat tcaacatata tcaacgcccg     10860
     tccagaaatt atcttttcat gtagaaggaa aacaaccagc ttattttgat ccaaagtcaa     10920
     acattgaaga cgttctagaa cgagtagcaa atgcagactc tcagtttatg gcctggctca     10980
     ctttgaatag aagaaatgct gttggaaaaa atggtaagcg agctagagag tgtttgtatg     11040
     ctgaaattcc tgcatatttc acatgggatg gagaaaacaa gtcgtttaaa aagagaacta     11100
     ggggtttttc aataggtcgc attcactatg tttcaaggaa aatggaagat gagtattttc     11160
     tcagagtact cttaaacatt gtgagaggtc caacgagtta tgctgaaatc aaaacctatg     11220
     acggtgttgt atacaagact ttcaaagaag catgttttgc acgtggtatt cttgacgatg     11280
     atcaggtttt tattgatggc ctggtggaag caagtcagtg ttgttttgga gattatctca     11340
     ggaatttttt ttgcaatgct tcttctctcg gattctttgt ctagaccagc acacgtcagg     11400
     tcacaaacgt ggcatctttt agcagaggat attttgaaaa caaaaagaga tgagttcaaa     11460
     aatccaggtt tttatatttt ttaccttcca tgtttcctta cttatagagt tttaatgttt     11520
     tcacgttatt tgttttaatg ttttcatcta aaattttgca gacctaacac tcactgaaac     11580
     tgaaattaag aattacacac tacaggaaat cgagaaaatt atgctgtcaa atggagcaac     11640
     cttagaagat attgatgagt ttcctaagcc tactagagat ggtattgata attcaaatag     11700
     actcattgtt gaggagttaa gatataaccg tgaatccaac ctaaaagaga agcatgaaga     11760
     atggaaacag atgctaactc ctgagcagag aggcgtatac aatgagatta cagaggcagt     11820
     ttttaataat ttaggtggag tcttttttgt gtacggtttt ggaggtacag ggaagacttt     11880
     tatttggaaa actctgtctg ctgctattag atgtagagat cagattgttc ttaacgtcgc     11940
     ctccagtggc attgcctctt tgttgttaga aggtggtcgg actgcacatt caaggtttgg     12000
     tattccattg aatcctgatg agttctctgt atgtaagata aaaccaaagt ctgatttggc     12060
     aaatttggtt aaagaagcgt ctttagttat atgggatgaa gcaccaatga tgagcaggtt     12120
     ttgttttgaa gctttagata aatctttctc cgacattata aaaaacacag acaacaaggt     12180
     ttttggtgga aaggttgttg tttttggtgg tgatttcaga caggtgcttc cagtaattaa     12240
     tggtgcaggg agagcagaaa tagtaatgtc atcgcttaat gcttcgtatc tttgggatca     12300
     ctgcaaggtg ttaaagttga ctaagaacat gagactacta gcaaacaatt tgagtgaaac     12360
     tgaagctaaa gaaattcaag agttttctga ttggttattg gctgttggtg atggtaggat     12420
     aaatgagcct aacgacggtg tggctataat agatattcca gaagatttgt tgattaccaa     12480
     cgcagacaag ccaatagaat cgatcaccaa tgaaatttat ggagatccta aaatcctaca     12540
     cgaaatcact gatcccaaat tctttcaagg cagagctata ttagcaccaa agaatgagga     12600
     cgtaaacaca atcaatgagt atttgctaga gcagttgcat ggtcagtgca cttttactct     12660
     tcagtttaaa gtttataatc tttatatgca atctattttt tattgaatat acaactgaca     12720
     tacattcaat ttgttttttg tttcagctga ggaaagaatt tatctatctg ctgattccat     12780
     agatcctaca gattctgatt cacttaacaa tcctgttatc actccagatt ttttaaacag     12840
     tatcaagtta ccaggtttgc ctaaccattc tttgcgttta aaggtcggtg ctcctgttat     12900
     gttactacga aatttggatc ctaaaggtgg tctatgcaat ggcactaggc ttcagattac     12960
     gcagctatgt actcagattg ttgaagctaa agttattaca ggagacagaa ttggtcacat     13020
     agttttgatt cctacagtga atcttacacc tacagacact aaacttccat tcaagatgcg     13080
     tagaagacag tttccactct ctgttgcatt cgctatgact ataaataaga gtcaaggtca     13140
     atctctagaa catgtaggac tttacttgcc caaaccagtg ttctcccatg gtcagcttta     13200
     tgttgctttg tctagggtta cctctaaaaa gggtttgaaa atcctaatac tagacaaaga     13260
     tggtaaactt cagaagcaaa caaccaacgt tgttttcaag gaagttttcc aaaacataga     13320
     ctgattacat tgctgccagt ctatgttcca agcatttgag aaaggtattc ttcatcaacc     13380
     tttattcact ttatatactt tcatttatgg ctgttaaacc cccacacagt aactaacaag     13440
     tagtatttga tctataatgt cacaggatta tttacattat tctgctgaag aggattaact     13500
     agattcgcat tactaaagta gtcatagaga aggattatga catcttctcc gacttcaagt     13560
     tcctcatatt ttaataaggc aactatgtta gtatgtctta actaaattgg tttgattgaa     13620
     tatttaaaat tagttttgga atttaaacat aatcaaccat tatttatatt cttgttgcat     13680
     ccaaatactt tattggaatt atctactaac atatatgcaa tcattagcaa caaagacttt     13740
     actatattgt gattggctac agaatcggtt agcacataat tagagattga ttaaatgatt     13800
     taaacggata tatagcaaga aacctttcgt atatattcac tgaatctata ttcatctttc     13860
     atcgtgcttc ttcaatatat atataagacc aatatttggt taacttccct caatctatct     13920
     tttctaaaaa tctgaacaat caccatccaa acttccaatg gccgagagaa attatatccc     13980
     agatctaaat ttacacagga acaatcatat tatatacgta aaaatattaa gcatgtggga     14040
     tttgcagtct atgatcaaac caactccgtc taccatgatc ctatgtgatg tgaaggtgag     14100
     tatctatgat gtatatttga attgttattc tggtttttgc tttctattat tttccaacaa     14160
     attttatatg gttctctttt tattcaggga aacaaaatcg atgctagaat accttggggc     14220
     gagtatatgt ccaattttaa gactagccta tttgaaggaa agtggtatta ccttcaacac     14280
     tttcgattga agagatcaac aacaatacca aagtacacag attttcacta tgaaatcgag     14340
     tttatgtggc acactaaaat gtgggctgta agtgatagag cagaacaaag ttctctcaaa     14400
     ttcatccatg ctgatgaagt caatggagaa tctgaggatc atgtagtcgg taatataagt     14460
     cttaatttta tagtatatca tttcttgcaa ttgttattcc ttagtactaa tattttgatt     14520
     aatactgact tattgttctg ttattgttag atgttattgg agttataaca actgtctcaa     14580
     ctgtgtcgag ttttccatat tgttgtcctg aaggggaaac agactatgat gccagatatg     14640
     tgatatttac catccgagat aatcagtaag ttaacaatca tggacttata ttggtataga     14700
     aattcgttag gaacagacat atatgtgtag tatgataaat ttgtattctc tttggttgta     14760
     gtgagaggat cataacttgt gttgctagag ggagtgcgtg tgagtctttt ctatcaaagg     14820
     tttatcgact tattggttcg aaaacttaca actacgagcc aatcactaca gtgctccggt     14880
     tctttagaac ttctatgttt aaaggttagt ttatatacgt taatatgtta tactcttacc     14940
     ttagaatgtt aaatcatgtg atatataact aatcaacaga atgataacaa atattatagg     15000
     atctaaggcc ttaatcagcg agtatgggtg ttcaagggtc ttcattgagg aagagtttcc     15060
     agactttgat gtatcatgtt acatgtatgt gaaagacatt agatactggt gatagtttgt     15120
     ttattagata ctaagttatt caagaagttt gacatctttt tatgtttttg ttacaacaat     15180
     ttttttgcag ctgaaccagt tggaaatgtt gaagggagga ttgagtatgt tgctaaggac     15240
     taatcctaga gtcagattcg tcggaagaag gatttgttta atctatttac cttgctttca     15300
     aaaatcaaat tattcattct taagttgatt ttgtttttgt cttttgaact attgtttgta     15360
     agaatgatca taaattgtgt tcattttggg agagattgtt tcagtttaaa aacaatctaa     15420
     gtattatata ataaatattt agtatadaaa ttaaattatt gtagaaattt aaatacatca     15480
     tatacttcat ataacaatag agcasccatg taattttaat gataattaca gttacaatcc     15540
     aaaaattaaa tttcaaacca attgaatcat atgaatttac atgtaataaa atacgatgta     15600
     tataaataga atattataca tgtttgcgga actttacaaa accagaccga aacatacaaa     15660
     tataatcacc catgtcaata aatataaata tatagtaaaa aatacaaatt aactataatg     15720
     atttaactgt caattatatt ataatgaaac catcatatta cgatcaaacg caaatactca     15780
     acctgcggtg taccgcaggt ccgtatctag                                      15810
//
ID   ATREP2      repbase; DNA   ; ATH   ; 566 BP.
XX
AC   .
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   05-MAY-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   ATREP2 dispersed repeat - a consensus.
XX
KW   ATREP2; ATREP superfamily; Dispersed repeat;
KW   putative nonautonomous DNA transposon.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1
RA   Kapitonov V., Jurka J.;
RT   "ATREP2.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
RN   [2]
RP   1-566
RA   Kapitonov V., Jurka J.;
RT   "ATREP2.";
RL   Direct Submission to Repbase Update (00-MAY-1999).
XX
CC   [1] (Consensus)
XX
CC   ATREP2's individual copies are 94% identical to the consensus
CC   sequence.
CC   Multiple diagnostic positions indicate the existence of several ATREP2
CC   subfamilies.
XX
SQ   Sequence 566 BP; 216 A; 79 C; 67 G; 202 T; 2 others;
     atctatatat acatttttgc agccattttg tgaaataaat cctgtagttg ggacttattt        60
     acaatggctg ccactggatt ttaatatttg tttttgataa ttagaaagaa aatcttcgaa       120
     ttaaatattt gacatttaac aatcttccca aaatctctcc acattaacta cacgattagt       180
     tactaaaata aaacttccaa aatatttaat atcatttaat tactacaaaa ttatcatttt       240
     tgatattgyt tttctccatg actataacaa ttcgattata atcatcaaac cgcagagata       300
     tttgatagca tttaattact acaaaattac aaaatattta gacaatratt cataaacata       360
     tcataaataa gatcaacatt aataaaataa atgagttttt tttacgggac gggttggcgg       420
     gacgggtttg gcaggacgtt acttaataac aattgtaaac tataaaataa aaatatttta       480
     tagatagata caatttgcaa acttttatat atactaactt taaaaaataa attgtttccg       540
     cggtataccg cgggttaaaa tctagt                                            566
//
ID   VANDAL14    repbase; DNA   ; ATH   ; 12268 BP.
XX
AC   .
XX
DT   22-MAR-2000 (Rel. 5.02, Created)
DT   22-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   Autonomous DNA transposon VANDAL14 - a consensus.
XX
KW   MuDR; DNA transposon; Interspersed Repeat; Autonomous DNA transposon;
KW   protease; MuDR-like transposase; VANDAL superfamily; VANDAL14.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-12268
RA   Kapitonov V.V., Jurka J.;
RT   "VANDAL14.";
RL   Direct Submission to Repbase Update (00-MAR-2000).
XX
CC   [1] (Consensus)
XX
CC   VANDAL14 is an autonomous DNA transposon. It generates
CC   9 bp duplications of AT-rich target sites upon integration
CC   of its copies in the genome.
CC   There are 5 copies of VANDAL14, 100% identical to each other,
CC   we found in chromosomes I,III,IV and V. These copies are
CC   flanked by 9 bp duplications of different target sites.
CC   VANDAL14 encodes three putative proteins.
CC   The first protein is a 998-aa VANDAL-like DNA transposase, distantly
CC   related to the MuDR transposase. It is encoded by five putative
CC   exons:
CC   CDS 1864..2529
CC   CDS 2604..2913
CC   CDS 3349..4229
CC   CDS 4358..5167
CC   CDS 5247..5327
CC   The VANDAL14 transposase:
CC   MVVITEITDDRYVRTVSGSWAIGADGTWLFISNHNNAVRRLSIGEGEKLASVRQLVREAY
CC   GQEYVEGPLHLTYQWPDWMDMETTFGGRTKPVSITSEETMGVFLAMRFELEDLSLFVSKQ
CC   TVDDGSEDGGTSQTSSYGFADKGKSPLYVNAERSPNYESVVWKRLMDDEAVLRWMRSTET
CC   EGQNVGDSSTNVQQHPVRPAVEAASPMLTTESMDTATEDGDQEEDSTVVEADLLKNLGLP
CC   SINLATESYDSLSEGEAYNDENDYPGGETIKECNFFGPSATNLVEPLGVHLDLAVPLHEA
CC   LEDMCLNFASFNRDAAPTLDEQGEEGRVGMELAIRDVVYEGDELFVGRVFKNKQDCNVKL
CC   AVHALNRRFHFRRDRSCKKLMTLTCISETCPWRVYIVKLEDSDNYQIRSANLEHTCTVEE
CC   RSNYHRAATTRVIGSIIQSKYAGNSRGPRAIDLQRILLTDYSVRISYWKAWKSREIAMDS
CC   AQGSAANSFTLLPAYLHVLREANPGSIVDLKTEVDGKGNHRFKYMFLAFAASIQGFSCMK
CC   RVIVIDGAHLKGKYGGCLLTASGQDANFQVFPIAFGVVDSENDDAWEWFFRVLSTAIPDG
CC   DNLTFVSDRHSSIYTGLRRVYPKAKHGACIVHLQRNIATSYKKKHLLFHVSRAARAFRIC
CC   EFHTYFNEVIRLDPACARYLESVGFCHWTRAYFLGERYNVMTSNVAESLNAVLKEARELP
CC   IISLLEFIRTTLISWFAMRREAARTEASPLPPKMREVVHRNFEKSVRFAVHRLDRYDYEI
CC   REEGASVYHVKLMERTCSCRAFDLLHLPCPHAIAAAVAEGVPIQGLMAPEYSVESWRMSY
CC   LGTIKPVPEVGDVFALPEPIASLRLFPPATRRPSGRPKKKRITSRGEFTCPQRQVTRCSR
CC   CTGAGHNRATCKMPI
CC   The second protein, a protease, is encoded by 2 putative exons:
CC   CDS 8021..7923
CC   CDS 7825..7217
CC   The VANDAL14 protease:
CC   MAVIRDIDFGACRTLSAIELREIVEFKTVVPKMVMDIFINSIRINWCANNIIEKHQAVSF
CC   IDSTFVVELSKHYPKFVKSADKGMYGFDHDLLECTPTGSAVVYIPFLIDLQHWVGLCVDM
CC   SARIISVLDCYTGLWRETKLKKVLLPLAEMLPYLFRFAIKMAGEKKLRLKSLAVHRENDI
CC   PQADSVKYSGVMAARLIEAHANGGIQACKEVKHADVVTAANKYFIAGFELANGIV
CC   The third protein is encoded by 5 putative exons:
CC   CDS 11628..10801
CC   CDS 10235..9570
CC   CDS 9488..8961
CC   CDS 8879..8766
CC   CDS 8687..8598
CC   The third protein:
CC   MAPIPLPPRLIALGEEPRGERVNVYQKMKTLYGIFNALDDDERQYLSRSPFARLLEFPNN
CC   HAWSASFGIFILGRQLEVTKPNEIWVLFAGTPIRFSLREFKIVTGLPSGRYPSLKMKKKK
CC   GTAGKTIPFNSKLFGLEEDVTVDRVITMLKRRVVSDPGMRIRCACFAIVDGFLVPISHYP
CC   KIIKSHAEMVEDVDAFLAYPWGGLLYALQLVVLQAAPAIQDSPVIDNPIDSDSEGAEDDV
CC   EVATRESVPFKLRNAKELDEKCSIRVASIICPDYVLDPAEDLSWSDDEEDERVENLLMLV
CC   NKGLIFKNDMFDGGCFPSQIQLASKKQKRGAKSNATRNRKGAKTSKNHGGVRSKPRRHTP
CC   EEVGSSEAVSMDAISRMLDAKLEAHSKTIISAVTDWLTKNTIIEGDHLKDPDSGVNHPKE
CC   TAPAGNVGASNTGDLGSNATNDEFGFNSLRTNSRSHCPERTSNVEASVDEILSFYNYNVS
CC   SGAGYKEAEGTNNVSDDVDSPLHSDHEDNSDGDNNVATGSIPPPQAVSRDNTECGNNTPN
CC   DEDFPSEPSMVHDSEGDNNLSIGASPSPKVVSEVNAQVSNGDAVEDDLSPGRDVNVEADV
CC   NERHDISPVTGAVTSPKLSGDNVEVQCSQLTTTNVDTLTNEVERPENTPANLAVSSPNHS
CC   VDNEECSQQAAHDVDLLGNECEESQGVPVVGVDSVSNEMSAELPDIVVPIPDVSADLPVT
CC   TVPAFCRGAPSAVSSPRQDFTTPPPSKEAMPPLQVNVDPEERFQNSMKKLKAISSISICG
CC   GIALSNKDILDLIDRKKNLTSKVMDALIRFSRHLLRTDDVDGEKLRLKVLDLKFVSLLYR
CC   QFTKFSRCNSKTEFQFPLPLIDILSGVGESDSVQLFTEADYIYLPFNFDKKHWVALAVDL
CC   KCRKIIVLDSNIQSRKDSAIHDVLMPLAVMLAYLFKQATFNPLMSQFLLDPFTIEPFCHS
CC   TGNFAS.
XX
SQ   Sequence 12268 BP; 3894 A; 2439 C; 2449 G; 3486 T; 0 others;
     gggttaattt actgaatgac caaatttgac atccttatta agagaatgac cttctcccag        60
     aaaagttggg tatataacgt ttttttacca tgcgaaatat ccgatatagc ctctacggat       120
     gggcggcaaa accatattcc cgacagcaga cttgtagatg taggggagct agagattgta       180
     gggcaatgat tacaacgtat caaaaaaaaa aagcatgcat tacttatgca gttactacta       240
     aataaagcat gaactattta tgagtgtaga tctcaattta gagctttcat tactacaact       300
     ttctaagttt gtactgaacg tttcataaaa tacatgcaat ttacaactgc agcagcatgt       360
     actatgaaag gatttatttc attttttttt taaaaaaata atcattaaaa aacaaaaaaa       420
     ttagtattga aatggagtat ataccacgat attgggctgg taactttttc gggtgagtat       480
     tgtactggat tgattattca acaaggtgaa tgggctttta ccttgaatct atgaccagca       540
     gaagtactac gatttggtaa acagcacaag tactacggaa acaacatgtg atgttttaaa       600
     atcacaataa tcatatcgga gcaacttgga aagaaaacat aagagaaaat tattagaaaa       660
     attcccggat gtgacaataa aaagcgcgag caaagagaga tggagatacg tatcagacgc       720
     atttaatgcg gcgtcagagg atatacagct tccaacgtaa tatattgttg tatgtgtaaa       780
     cccttttctt tagtgtagca ctttttaaca caaggtttgt gtgcttatgc tatacgctac       840
     aaaatggcag gtcgataagt tgacacgttg gtcaatgacg tcaagattac gaataggcaa       900
     gtgggggcag aagatatact gaatctatac ctcggttcac ggaaatgtgt aaagcaaaga       960
     ctaagtaaat cacatggtta ttttgacgat aacatgcaat acaaataaag aacacttaac      1020
     acttcgattt gacattggtt aattgtgtaa agcaaggttt gtgtgcttat gctatacgct      1080
     acagaatggc aggtcgttaa gttgacacgt tggtcaatga cgtcaagatt acgaataggc      1140
     aagtgggggc agaagatata ctacctcggt tcacgaaaat gtgtaaagca aagactaagt      1200
     aaatcacctg gttattttga cgataacatg caatacaaat aaagaacact taacacttcg      1260
     atttgacatt ggttaattgt gtaaagcaag gtttgtgtgc ttatgctata cgctacagaa      1320
     tggcaggtcg ttaagttgac acgttggtca atgacgtcaa gattacgaat aggcaagtgg      1380
     gggcagaaga tatactacct cggttcacga aaatgtgtaa agcaaagact aagtaaatca      1440
     cctggttatt ttgacgataa catgcaatac aaataaagaa cgcttaccac ttcgatttga      1500
     cattcgtgaa ttgtcgcttc acgcctccct cgggtgttgg gagggaaatc ataccgtttt      1560
     gaaattcgcg tggctgcaaa tggttaagca actgttacta gaaatatctt tagttactgt      1620
     agccctaaaa aacaaagtta accttttcta taaaagaaga aagatggcaa gatatcatct      1680
     ctcacacctc tacttcttcc tataaagcac acactacgta tccaacaaca tcgaagaact      1740
     cgatcatttc tgttttggta tgcaattaat gaatgttctt ttggtcgggt ttgttgctat      1800
     ttttaaaaaa ctcatggttg atttatctct atttaatgca actctattaa tgtgtaggta      1860
     ccgatggtgg ttataaccga aataaccgac gatcgttatg tcaggacggt gagtggctcc      1920
     tgggcaatcg gagctgatgg aacatggtta ttcatatcca atcacaataa tgcagtgagg      1980
     aggttgagca ttggggaagg ggagaagtta gcatctgtgc gccagcttgt tagagaagcg      2040
     tacggacagg aatacgttga aggcccacta cacctgactt accaatggcc tgattggatg      2100
     gacatggaaa ctacctttgg tgggcgcacg aagccagtaa gcataacttc agaggagaca      2160
     atgggagtgt ttctagctat gcgttttgag ttggaggact tgagtttgtt tgtctccaag      2220
     caaacggtgg atgatggttc cgaagatggt ggaacaagtc agacttcaag ttacggattt      2280
     gcagataaag gcaaatcacc tttatacgtc aacgctgaac gatcacctaa ctacgagtcc      2340
     gttgtgtgga aaaggcttat ggatgacgag gcggtcctcc gctggatgcg ttcaacggaa      2400
     acagaaggtc aaaacgttgg agactcttct accaacgtac aacaacaccc tgtgagacca      2460
     gctgttgagg cagcttcccc gatgttaacg actgaaagta tggacacagc gactgaagat      2520
     ggagatcagg taaaatattc tgcgtttatt aaattcagcc actcgaatat accattacag      2580
     tactaagaca tctatttacg caggaagaag actcaactgt tgttgaggca gatttactta      2640
     aaaatctggg gttaccgtca attaatttag ccactgaatc ttacgactct ctcagtgaag      2700
     gggaagcgta caacgacgaa aacgactatc ccgggggcga gacaattaag gagtgcaatt      2760
     tttttgggcc ttccgcaact aacttggtgg aacctctagg tgtacacttg gatctcgcgg      2820
     tacctctgca tgaggctctt gaagacatgt gccttaactt cgcatctttc aacagggatg      2880
     cagcgccaac cctagacgaa caaggggaag aaggtaccaa ttacatagca tgttgttttt      2940
     aagaacaaca catattgcaa gagtgttcta ataataaccg tcatatagag taacatgtta      3000
     ttcgtataaa taccatgcaa taaaaattta atttcgctga attcctgatt agtcgtacga      3060
     atacaatctt aatatccaca tcatatttgt ttagtttaaa taacaaattg tatttaatat      3120
     catgtaatat aatgatatgc ttacaaacca acacatggtt tcaatttacg ttgatatccc      3180
     tgagatatcc ctaatcaaaa tatagagtaa catgctttaa tattgaacat catgggatat      3240
     agatattatg ttggtcaaag tgttactatt tagtcataca aatacatgct ttctacattc      3300
     acaacatgtg tacagtgtaa ataacacacg aactttattg ttgtgtaggc cgcgtcggaa      3360
     tggaattagc aattcgggat gtggtctacg aaggtgatga actgtttgtt ggccgggtat      3420
     tcaaaaataa acaggattgc aatgtcaaat tagcagttca cgcacttaat agacggttcc      3480
     atttccgtcg tgatcgttcc tgcaagaaac taatgacttt aacctgcatt tctgaaacat      3540
     gcccttggcg tgtatacatc gtcaagctgg aggattctga caattaccaa attcgaagtg      3600
     ctaatctcga gcacacttgc actgtagaag aaaggagtaa ttaccacaga gcagcaacaa      3660
     cgcgggtcat aggcagcata attcagtcta aatatgcggg caacagtcgg gggccaaggg      3720
     ctattgacct tcaacgcatc ctattgaccg attactcagt tagaatttcc tattggaagg      3780
     catggaaatc aagagaaatt gcgatggata gtgcacaagg atcagctgcg aatagtttca      3840
     ctctgttgcc agcctaccta catgtgctgc gcgaggctaa tccaggttca attgttgatc      3900
     taaagacaga ggttgatgga aagggtaatc accggtttaa gtacatgttc ttagcattcg      3960
     ccgcatcgat tcaaggtttc tcttgcatga aacgagtcat tgttattgac ggtgcccacc      4020
     tgaaaggcaa atacggtgga tgcctcctaa ccgccagcgg ccaagacgct aatttccagg      4080
     tttttcccat agcgtttggc gtggtcgata gcgaaaacga tgacgcatgg gaatggtttt      4140
     tccgtgtttt gagcaccgct ataccggatg gagataacct gaccttcgtc tcagacagac      4200
     attcctccat ttataccggt cttcgaaggg taatccttaa aattgataat tttaaatgtt      4260
     acatgttata tacagcatat ggctcttatt tattttagaa cacatgctat ctaccaatat      4320
     gccctgctat atacgtataa cacatgttaa catgcaggtc tacccaaagg ctaagcacgg      4380
     ggcatgtatt gttcatctgc aacgaaacat agcgacctca tataagaaga aacacttgct      4440
     gttccacgtg tcaagagctg cgagggcttt ccggatctgt gaatttcata catatttcaa      4500
     tgaggtgata agactagatc cggcttgcgc acgatacttg gaatctgttg gtttttgcca      4560
     ttggacacgc gcttatttcc ttggggaaag atacaacgtc atgactagca atgtggcgga      4620
     gtctttgaac gcagtcttga aagaagcccg tgaactacca atcatttcct tgttagagtt      4680
     cattcggacc acattaattt cctggtttgc tatgaggcgt gaggcagcta gaaccgaagc      4740
     atcgcctcta ccaccaaaga tgagagaagt tgttcatcgt aactttgaaa aatcagtccg      4800
     atttgcggtt catcgccttg acaggtacga ttacgagata agggaggaag gcgcaagtgt      4860
     ctaccacgtg aagcttatgg aacgcacatg ctcctgtaga gcatttgatt tgcttcactt      4920
     gccttgcccc cacgcaatag cggctgcagt ggctgaaggc gttccaatac aaggactgat      4980
     ggcgccggaa tattctgttg aaagctggag aatgtcttac ctaggtacca taaaacctgt      5040
     acccgaggtt ggtgacgttt tcgctttacc tgaaccaata gcctctctcc gcctcttccc      5100
     gccagccacg cgccgtccat cgggacggcc gaaaaagaaa agaattactt caagggggga      5160
     attcacggta aacgttatac atttggaatt tactgtaaca cccttagtgt tttaaattcc      5220
     taacaattgc tcaatcttca tctcagtgtc cccagcgaca agtaacacgt tgttctcgtt      5280
     gcacaggcgc cggccataat cgcgccacgt gcaaaatgcc catataaagg tacaatgtta      5340
     ttttataccg tatcatgcta tagatagaaa caacgttcat acaattttta taatatcatc      5400
     tgcagggggt gttgtgtctc gcgtcttctt catgagttat atgttgtgtt atataagcaa      5460
     ggggaagtcc atcacatatg gatattatgt aaaaggaagg gtcacttggt ataatgtaca      5520
     tattagcaat tagatgtggc aattagggtg gcaactaaaa gctacgttga gaatgcaatc      5580
     aagggacccc aattccagta agtgccgtat agaagaccac cttctacgga caaaggataa      5640
     tgttctgttt tttggctttt gtgtagaaaa aaactttatg ttcccccttt tgtaaacaga      5700
     ctcatgatat taagtaaaga cgcgagtgtt taattattaa tacgtggtgt aatgtaaaat      5760
     tcagatccac agacaagggg ttaaatgagg aaatatatga aacaaatata acgaatagat      5820
     atagcaccat tactggcaaa ttaaagtcca taaaaatgtt cagccatcat gaactgacat      5880
     tttatgtcaa ggattccaac aagatgaaat cattccaacc ataaatcaaa ataagatgct      5940
     attcgagaaa accacatgtg atgtttagca attgcgtgag gtaaaaccgg gcaccgagag      6000
     ttgaacagtt ccacatagga ttccttatgc cacttcgact attttctcag aacccaataa      6060
     gtgcttctgc accacacatt tcacccccca actacgccac ataaatgagt gaatatatac      6120
     actaacaata ttggactata tatacatatt ggctatcaac atctccgtca ataataaaac      6180
     gtccttcggc ctacttacac atgcttgcaa gggtagaaat gagacagtat cgtcagaatc      6240
     cagtactcat gcgggtgggt gggctgttca gaaaacaatt tgacgacgca ttggaggcaa      6300
     ataacccgga agcacattat cttgaagggc taaggtatgc ttgttgggag aaagatttag      6360
     tcatggcaaa aaaacacatt tttaaagctg taaacaaggt agatgaggcg ctgtttgtta      6420
     tggctatgtt gtctatttgt ggtggtgaga aggagctagg tgaatttttc actgaacaac      6480
     tgtttgccct accttgggcc gaagtattag ctatgggtga ttctttattt tcagctcttg      6540
     aacgaatggc tgtgcgccat ggtacagctt acaagcttac atggaatggg gcccatcctc      6600
     catgtgtatc aatccacaac atatataata gatgcgaaga gtgctacatt ttcttttgtt      6660
     caaaagaatt ctgtcggcga tgttagatgg tacaagctgc acccaacgtg gaaatctcgt      6720
     aaccagaagg gaagcatcct ttaaaataat atgctgttat tttatattaa cccgcgtagc      6780
     atctataaat cacattctgt ttgtaaaaag tacatgtttt atgtctaatg tgttagtcgt      6840
     tatgataatg gtgtcaaata acgatattac attaaaatgg cgtgatatgt acctatatta      6900
     catgttttat attgactttt tgatcatgtt aatctgtcta aggtgtataa tccaaaatat      6960
     ttttaaacgg gtcattatta ttgcaaagtt tacaaccggg taagtcctaa atatcaacta      7020
     agccacagtt agaatgcatc tatatttaaa cgaatcatga ggtaaatata aaacgcacgg      7080
     tacatattag aattgcagtg acatatgttt actacacaaa acaggtgcat agaaagaaca      7140
     ttaggtactc aactgttagg tgtctaatat attacagagt caggtaatag aaggtaaaca      7200
     cactagaaca tttgggtcag acaatcccat tagctaattc aaaaccggca atgaaatatt      7260
     tgttagcagc agtcaccaca tcagcatgct tcacttcttt gcaagcctga atcccaccat      7320
     tggcatgggc ttcaattaaa cgagctgcca tgactccaga atattttaca gaatctgcct      7380
     gtggaatatc attttctctg tgaaccgcaa gagatttcaa acgaagtttc ttttccccag      7440
     ccattttaat agcaaatcga aatagatatg gtaacatttc agcaaggggc aaaagcactt      7500
     tcttcaattt tgtttcacgc cataatcctg tatagcagtc gaggacgcta atgatccttg      7560
     cactcatatc aacacaaagc cctacccaat gctgtaaatc aatgagaaat ggaatgtaga      7620
     ccacagcaga acctgtaggg gtacattcaa gtaggtcgtg atcaaaccca tacattccct      7680
     tatcagcaga cttgacgaat tttgggtaat gcttggataa ttcaaccaca aatgttgaat      7740
     caatgaatga aacggcttgg tgcttttcaa tgatattatt tgcacaccag ttaatcctta      7800
     tgctattaat gaagatgtcc ataacctgta aatagagtag aacgcatatt aggtgtttaa      7860
     ggcaaaccct atgtttatag agcactatgt aatctttttt acccacatga tatttatcat      7920
     accattttgg gtacaacggt cttgaactca acaatctcac gcaactcaat ggcggaaagt      7980
     gttcgacaag ccccaaaatc aatgtcccta ataacagcca tatgcataag ttttaagtaa      8040
     tatgagtcaa acaaaataaa atagcataag gttggaatta atacccagac atgccatata      8100
     agcgatttat cttgttctta cggctaacat catgcccaaa agtaacagac ctaccgcttg      8160
     tggaagaggc tattacggat tcatgttgga gctgtgagca acgtaaacgt gattagaaaa      8220
     tcagatgtta tcttaataat caggaaatta gagtttgcat aatcctaaac attctgtgtt      8280
     aaacttaatg gcatgtaatt tgttctaaaa ccttgatgtt tgtacgggca aaacacttac      8340
     aatatgacaa aactttttaa atattttttt gttatattag gtaaaaccct gaaccatgct      8400
     gaaaatacat gatgtatcgc aaaatataac cgtgtgcata ttaaaccagt gttttgtttt      8460
     taaaaaccat gaataagtaa acttgaccta ccacaaaact acgaaatcca tatttaacaa      8520
     tatcttaacc attcatgcac ccaaactaga cctaacacaa aactatgaaa tccatattta      8580
     acactagcta aacgcattta tgcaaccttg ccatcagggt ccacaatatc atttgttggg      8640
     gctggcaggg acggttcaga tatcatcggc atttggctta aattggccta aaataagaaa      8700
     cagttgcatg taattagttt gttagtggta acgagagtaa aaaataatga attatatgat      8760
     ctaacattat cggctgtagc aggtgggtca gcaagtcctt ctccatcttt atctgaagca      8820
     ccgtcatcaa ccattggccc gggggttgac ttacattggg cagtcaaatc agactctatc      8880
     tgcaaggcaa acaacagacg ttagagccaa tacacggaaa aaaaaaaaca taaaaactat      8940
     atgagaaggt ttgaactcac tatgcatggg atggtgtact gcaactctgg ctgacctaca      9000
     ttgtatgcaa caccatccat gtcaacaagc accacatatg gatcagggag gctgggctca      9060
     gattcaaaga actcattgac gtctgtggga ggaggaagca aacactgagt atgactcgct      9120
     gcagctggaa taggtttatc agggctagtt tggatatcat caaggccctc tccacctatc      9180
     ccatcaccgg gggcatcaac caagatatta tcttgatggg atacagtttt atcaccagaa      9240
     acagactttt ccgcaaacat atcgtctaat tctttagccg gcagagtgga agagccaatg      9300
     tcatgaatcc catctctagc tgactcatcc tcagtggtat cagtcaccac ccctccaact      9360
     ttgttgatat tgacagcttc aggggataca tgtttatcag cagaaacaga cttttcagct      9420
     gaactgttgt ctactgctgg cgtcaggatg gtggctgctg ttgggccatt gttgcctctc      9480
     ttccgtttct gtttgttatg aaaacaatac ttgaattagg aagaactctc ataaaataca      9540
     gaatatttac aaaactgtta aacgtatacc agagaactac gcaatccagg cctagtcggt      9600
     ggggataagc gacctatggg ggttgtagtc tgtgtaggtt ctgcgtcgtt aatatcatgc      9660
     atcacttcac ctaagacttg atcaataaat ccagaaccac tgttctcctt cgactgggct      9720
     accctgccat tatccaaaac aacaagggag gatcccttct tcccacctaa tccctcaccc      9780
     acatctcttg acttaggacc actgtgacgc ttattcttcc tgccatggct ttccctcaac      9840
     aagctgctca atctagcctc tgaatcagct atagccttca acatacgcga ctccatacgc      9900
     ttgtctttca tgtcaatgta atttttaatc gaatctggta tgtgaacctg ccctttagtt      9960
     ttacggggtt tagaagagcc aggcaaggaa gcatcaggtt gtatggtatc ctcatcaaca     10020
     caatcataag tgctacatac atcactgttg tcattccttt catcgggtag cgaatcaggg     10080
     acaacaccac ctgaaaacat ggaccccttg aatatgtgct cctcttttat tagttgcaac     10140
     atgtagtcaa cagatagatc ttcttcgtcc tcgacccaac ctgacttgaa agcgtcacca     10200
     gtcggtgttc cactccaaat agaaacgact ttaatctgaa aaacaaagag ttagacttta     10260
     gccacatgat attatgtttt attacatgta ctaaaagtat ttatactgtt actaacagtg     10320
     aaatatagat tatgtaccca tgtgctcctt aaaaacaaca tgttatttca tcatataacc     10380
     agatgttgta atgcataccg ccatacgtga cttactaagg taacagggta tggttattaa     10440
     aaagaactgt gatcatattt aaaaccatgc agtttttgca taaatcatga tataaataat     10500
     aaatagtaaa tcagcacata ttaaaaaaaa acttaaccac atgctacaca tttacagcca     10560
     tgttatgatt attctaaaga aactgtgatc agatttaaaa ccatacaatt tatacagaaa     10620
     tcatgatata aataacaaat agtaaatcaa cacatattaa aaacctaagc cacatgctac     10680
     acgtttacac agaatgatat gaatctataa ttgtatgttt ttgataggaa aagaagaggt     10740
     tttcatgata aaaacgagca tatgaaaatt aatttacgag agcagagatg cattgctcac     10800
     ctgagactgc cggtcgactt tccaaacaag atccaacttc aaactccata agcgctcaat     10860
     ttccgtatct gtttcctcca tttctgagtc actatcttca acggcttcag ggaattgcaa     10920
     ttctctgatt cgaggaacac tttgcagtag caaaagttgg agtgcgtgtg ggaaaccttg     10980
     aacggtgata gatttccgca taagtttatc agctcccctt gcagtaacac tcttcaacgt     11040
     cattaggaat gacatagtcc cccaaggaaa atttagaaac atgtctaaat tttctgccat     11100
     gtccgcatgg accggagaga ttttacttct acccgaggtt gggcataaaa cgccatcaat     11160
     caaggccagc acagcgtaac gtaaacgaat tccttgatct tgaaccactc gcttcttcag     11220
     cctgccaaca acccactcaa cagatacatc actgcggtca aataggctgt accaatactt     11280
     gccaggcgcc aattttcgtt tccctttcct ctctttcata cgaggcggtt tgtcgcagtt     11340
     caaaccggta acattttgaa actcagaaat ggaaaaccga acaggggatc cagagaaaat     11400
     tacccaaatt tcttgtttct tcctaacaac aagctgcctc gttagcaaaa agtgaataag     11460
     cttcccagaa tacgcggcgc tttcggagaa atcaaataat ttcccaaact gagattcccg     11520
     gagaattttc atgtcctccg catctaacgc gttagcgatg tcatctatca aagacagttc     11580
     actgtaggac tgcactctct caccgttggg ctcggatcca gacctaaaca atcgacgggg     11640
     taaagagttg ttcatcatct acaagtcgaa cccttttctg cacaaaatag aagtttataa     11700
     atcagaaaca gtatgtacct aagatttcag ttaatcggaa tatagattgg agaaataaag     11760
     aagttgatgg cgatcgagaa cgttgaatag cttaaaccgc atatatttgt gaaattacct     11820
     gtagcccgat ggaattgatt gcctaactgc gagattgaat ctaaagaaac gatatgtatg     11880
     agaaacaata tagatttgaa atagatattc ggagagtttg cagaatctat gggtagagaa     11940
     cggaagacgt ttcctctcgg aaaaccagca aatgaagcgg cgctaggttt ttttttggag     12000
     ctcctgatat ttcaaaaaat tcgataataa atcgatttct cgaaattaaa atctatatcg     12060
     tttgcgtcca catacagcat tgctcttacc aaggttttca aaattcaaat ttctgcaatc     12120
     atacgcctat acacctatat gtcccctaac caagaacaca gttatagggg gttgcgggta     12180
     atttcagata cgtctccgac agacactata gactcatagt tagtttctat attattattg     12240
     atttcatggt catctagtgc atataccc                                        12268
//
ID   HELITRONY2  repbase; DNA   ; ATH   ; 11116 BP.
XX
AC   .
XX
DT   29-AUG-2000 (Rel. 5.8, Created)
DT   29-AUG-2000 (Rel. 5.8, Last updated, Version 1)
XX
DE   HELITRONY2 is a non-autonomous DNA transposon, a consensus sequence.
XX
KW   DNA transposon; HELITRON/HELICOP superfamily; HELITRON2;
KW   replication protein A; HELITRONY2.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-11116
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY2.";
RL   Direct Submission to Repbase Update (00-AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   HELITRONY2 is a non-autonomous HELITRON-like DNA transposon.
CC   There are ~10 copies of HELITRONY2 in the genome; they are ~97%
CC   identical to the consensus sequence.
CC   HELITRONY2 transposes precisely in the AT target sites, without
CC   duplication of the host DNA.
CC   HELITRONY2 carries four genes that encode peroteins ATREP1X2A,
CC   ATREP1X2B, ATREP1X2C and ATREP1X2D, respectively.
CC   AREP1X2A is 518 aa long and is encoded by 10 exons (position
CC   1057-3521), it is similar to the large subunit of RPA1,
CC   the replication protein A:
CC   MMLANPLPFTPLKSLKPYKNAWRIQVKLLHVWRQYSVKAGESIEMILVDKAGDKMYAAVR
CC   REQIKKFERCLTEGVWKIITTITLNPTSGQYRISDLKYKIGFVFKTTVSPCDTVSDALFL
CC   SLAKFDVILSGSANSNILHDVMGQVVDRSEIQDLNANNKPTKKIDFHLRDQHDTRLACTL
CC   WGKYAEIVDKACQESTDGIVVCLIRFAKINLYNDTRSVSNSFDVSQVFVDPTLAELGLFK
CC   QSIPTDGLTLGSSGSFHKRLYAPRTGDDDGDYPRQTIKEVLTSSDVGKCKTVCTVSAIDT
CC   DWPWYYFCCRAHNKKVVKEEAIKLEDVKQPQKPRFWCEICNGFAKSVVAKFWLHLHIMDQ
CC   TGEARCMLFDSHAKEILGTTAPQLLDGSFDEIEDPTVLPDVINGLKGKTFQFLLCIQREN
CC   IFGGYDSFTVARVYTGNIVDEIVQEDSDAYVDPSSLISIEQGSLMLTNGVDLSDVDLSST
CC   STPSSKRKDSDDVDGNDQASTSRKKCSRMTMSEERSGE
CC   AREP1X2B is 195 aa long and is encoded by 4 exons (position
CC   4254-4388), it is similar to the ssDNA-binding portion of the
CC   large subunit of RPA1:
CC   MSVHKLTDLRDNSTNWKINVKILSIWNHPPNSHGEITTMILHDDKNNRVDATIPQGNYHN
CC   PFRPFLKPGTWIHISDFRVVVPQSRVRYSSFRFHIKFIWETSVYPLPELVKRDFFDFIFP
CC   IDLKYPCLEDWDYVTDAMGVVTNISAIKKFLFVCRQGETDYESRYVSFELLDNIRGFEDY
CC   DELPKNPRMEVIEEN
CC   AREP1X2C is 218 aa long and is encoded by 5 exons (position
CC   7087-8177), it is similar to the ssDNA-binding portion of the
CC   large subunit of RPA1:
CC   MIDAICAYFYTGYDVPRVLNEGGWFFLENILLIKSVGGRKPPLTDNKLRIKFLQTTKMTP
CC   VPNREPSNFFRFAAFSMIENKTINSSTVHDAYGIVVRVGNITRPDFVPQASENTILSQFL
CC   EFEIKNSCGYTCELFVQLWRGLGLELGYHWNFGMNPTICVLRFWNVDDHEGRQCLISHNG
CC   ASRITFNQSYPEINMDRVRTQFLQRMQTPELDEVVDEN
CC   AREP1X2D is 215 aa long and is encoded by 5 exons (position
CC   9277-10327), it is similar to the ssDNA-binding portion of the
CC   large subunit of RPA1:
CC   MGLILADEHGMTIEATVGYKMSDHYKDFINEGEWVTITNFGVVENSGSVRATTHSFKIGF
CC   SVDTVVRLTSPVPAIPHYRLASFSSIIDDEIDKSVLVDLVGAIYDVGELINTRPKQNNVD
CC   DLTLTFKISDNENRVLECLATKKEALDFDHNYRRYGGGVIVAVLGWWKIDRYFDGPKNVR
CC   VCTAGPISTVFPDPDIPESNEIHEMLRDEGARNGG
CC   There is 95% nucleotide identity between ~4200-bp 5'-terminal
CC   portions of HELITRONY2 and HELITRON1; their ~360-bp 3'-termini
CC   are 87% identical with each other.
XX
SQ   Sequence 11116 BP; 3488 A; 1694 C; 1637 G; 4297 T; 0 others;
     atctacacta ttatttgaga cgtacgttaa gtgattctca gttaaaacaa aaaaattacc        60
     ttaaaatcat atgtttaaaa tgttaatgtc atggaaaaat ttacctttaa ctgagaatca       120
     cttaacttac gttataatct tggccattcg attgaattat ttgtgtctgt tcgatctctc       180
     gccttcactt aaaaaacacg cggatccttt tgacccggat ttacaatttt tgggtcatac       240
     gttataatct tggccattcg attgaagtgt ttgtgtccgt tcgatctctc gccttcactt       300
     aaaaaacacg cggatctttt tgaccctggt ttacaacttt tgggttatgc gttataatct       360
     tggtcattca attgaattgt ttttatccgt tcgatttcgt attttccaaa aaaatacacg       420
     tgcatttttt attaataaaa caaaaaatgg aattctcctt ttaatcctgg ccgttgaata       480
     gatttatttc aagtcgtccg attttgtagt ttcatgcata aattcatccg actctatttc       540
     aggaaactaa tcgtattaat ttcattaaat atttggcgta tcttcgtgga tgacgatgaa       600
     acagtatttc gtatggatct tctttgagaa ttatcttaca ttttctccat aattatagca       660
     catataatat ttcgtttgga tcttcttttt gaattatctt acattttctc cataattata       720
     gcacatctaa tatttctttg cgatcttctt ttggaattat tttacatttc tccataattc       780
     taacatatct aatatttcgt ttcaattctc ttttgcactt atcttacatt tttttcaagt       840
     attccctata ttcataccta cttttatgga aatgataaat attttcctat aatcatcgga       900
     ttttttatat cgaataaact tgaattccaa ggataatatc ttttgcgcat gtttttttga       960
     ccaaactgct cattcttata aatatcggac gcctcatttc aatctactca ctcagcttac      1020
     actcacacag tttcatttcc aaattcattt ttaaaaatga tgctcgccaa tcctcttcca      1080
     ttcactccct tgaaatcgct aaaaccttac aagaacgctt ggcgtattca ggttaaattg      1140
     cttcatgttt ggaggcaata ttctgtaaag gctggtgaat ccatcgaaat gattttggtt      1200
     gataaagctg tacgtattat agtttcaact ttatgttttc gtaaacctta tagtgtgttc      1260
     aagcatcatt ttcttttact aattattatt taaattattt ttgtcatata gggtgataag      1320
     atgtatgctg ctgtgagaag agagcagatc aagaagtttg aaaggtgctt aaccgagggt      1380
     gtttggaaga tcattacgac aatcactcta aatcctacaa gtggccagta tcgtatttct      1440
     gacttgaaat acaagattgg ttttgttttc aaaaccacgg tctctccatg tgataccgtt      1500
     tctgatgctt tgttcctctc acttgctaag tttgatgtga tcctctctgg atccgctaac      1560
     tcaaatatct tgcacggtta gattcaagtt ttcattttat tttagaacat acatgcatta      1620
     tctcttatgt agtcattata ttcatagatt tattgtattt gtctatacag atgttatggg      1680
     tcaggttgtc gatcggtctg aaatccaaga tcttaacgct aacaacaagc ccaccaaaaa      1740
     aatcgatttc catttgagag atcagcagta caaacaatct atattcatat tcattcttat      1800
     ttaaagttta ttttttttac tttttattaa taaatttatt ctttccattt ttagtgacac      1860
     tcgcttggca tgtacacttt gggggaagta tgctgagatt gttgacaaag cttgccagga      1920
     gtcaaccgat ggtattgttg tttgcttaat ccgatttgcg aagatcaatc tctacaacgg      1980
     taattatatt gttatgtgtt actacatatc tatactattt taaaaacacg atcttatatt      2040
     tttaaaacag atactaggag tgtttccaat tcttttgatg tttcacaagt cttcgtggat      2100
     cccacgttgg ctgagttggg tctttttaag caaaggtaat tgtatttatt tgtcactaaa      2160
     tatatttgtt tatacataat attaagcaaa ctatattttc ttgatatata gcataccaac      2220
     tgatgggtta actttgggaa gttctggatc ttttcacaag aggctctatg caccaagaac      2280
     tggggatgac gatggtgatt atccaaggca aacaatcaag gaagtcctca catcttctga      2340
     tgtactattc attaatttat ttatcctact aacattttta ttacattttt atatttttag      2400
     cttagtttgt taattcctct ttatattcat ttgaaggtgg gtaagtgcaa aacagtttgc      2460
     actgtttcgg caattgatac agattggccg tggtactatt tttgttgtcg tgctcacaac      2520
     aagaaggttg tcaaagaaga agctatcaaa cttgaagatg tcaagcaacc tcaaaagcca      2580
     agattttggt gtgaaatatg caatggtttt gcaaaatctg ttgttgccaa gttagtcttt      2640
     atgaaatctt tatattgaat gtattattaa ttataatttg gtgtttagaa gctaataatc      2700
     ctatttaact tttaggtttt ggctacatct ccatattatg gaccaaaccg gtgaagctag      2760
     atgcatgtta ttcgatagtc atgcaaagga aattcttggc actactgccc ctcaattgct      2820
     tgatgggtca tttgatgagg tataatgcct ttttaaaaat aaactctttc attaaaatga      2880
     ccacgttcat gttataataa tctgtatttt ctgtagatcg aagatccaac tgttttgcct      2940
     gatgtgatca atggtttgaa aggcaagact tttcagtttc tattgtgcat tcaaagggaa      3000
     aacatatttg gtggatatga ttcattcact gttgcccgag tctacaccgg taacattgtc      3060
     gatgaaatcg ttcaagaaga ctctgatgca tacgttgatc catcatcctt aatttcgatc      3120
     gaacaggttt gacaaataac attaaactat tccaattatt tctcaaaatt ttttagggtt      3180
     gtcttattaa aatgtttttg tattttcata tagggttccc ttatgctcac taatggtgtt      3240
     gacctttctg atgtcgattt gtcgtcaacc tctactccat catcaaaacg aaaagattca      3300
     gatgatgttg atggaaatga tcaggcttcc acaagtagga agaagtgttc taggatgacc      3360
     atgtctgagg aacgctccgg cgaatgatgc tcaatgacta ctccagcttt gatcgttttc      3420
     ttctttctta tttatttgct taaagttatc agagttgttt tattttttaa gatctaaact      3480
     atctttattt tatttgtgga atttttttgg gaattaataa agttatttca attatatgtc      3540
     gttttgtttt gttaaatcta aatttttgga atacacagag ctgagatttg attactctct      3600
     tagtttcacc aaatattatg ttgtagaatt ttgacacaaa gtaagaataa caacttttca      3660
     ttaaatatta ttattttgtt agtttaacta tagtattagt tatatttctc tcttctttta      3720
     ttggttaaca ataaaaatag taatgatgtt gttgtacaac atcaatcttg atgaaagaag      3780
     aaaaaaactc aaaacatcaa tttttcagaa aaaaaatcta cactattatt aagaaacaca      3840
     tcatttggtt tttataatgt taatcatact aataactata aacaattttt taattttgta      3900
     ttaaatattc tacaaaatca aaaatagcaa agattttgta cactaaataa tccgtcttat      3960
     taaatatgat taatcatgat aactcaaaca aaacaaccta tttctatttt ttcatagatt      4020
     ctcattttat taattataat atttagtaac acgctaagaa ataaatgtca tcattattgt      4080
     tctaacctat aagaaatcct attggttcta gacgattcgt ttccttttta cacttcaact      4140
     tttcatcatt gtatcttttc ccaattatat aaaatcaaaa acctcaagtc tagaacaatt      4200
     aggtttaact ctttatcttt ctaaacaaaa aaaaacttcc ttcgatacac aagatgtctg      4260
     ttcataaact caccgatttg agggataact caacaaactg gaagattaac gtcaagatcc      4320
     tatcaatttg gaatcatcct ccaaacagtc atggtgaaat tacgaccatg attcttcatg      4380
     atgacaaggt ttgtattttc actttttttt cttttaatcc caatttactt tgttattatt      4440
     gaaacagatc atcacaaact atttaatctt tgagttgttt ggactttttc agaataaccg      4500
     tgttgatgca acaattcctc aaggaaacta tcacaatccc ttccgtccgt ttctcaagcc      4560
     tggcacatgg attcacatct ctgactttcg ggtcgttgtt cctcaatcaa gggttaggta      4620
     ttcgtccttt cgttttcaca tcaaattcat ttgggaaaca agtgtttacc ctctcccgga      4680
     acttgtgaaa agagacttct ttgacttcat ttttcccatt gaccttaagt atccatgtct      4740
     tgaggattgg gattatgtca cgggtaagtt tttagtcaat ctatgttctt ctcattttaa      4800
     gaattaattt atgatagtaa tttatgttat tatttttgaa atatggtatt aatatattat      4860
     tctatactta gatgcaatgg gtgtggtgac aaatatctcg gctattaaga aatttctatt      4920
     tgtttgtcgc caaggtgaaa ccgactatga atcaagatat gtctcattcg aacttttgga      4980
     caatatgtaa gttgtagtgt ttttaagtat gtttagtaat gcaatgctta gtttaatatt      5040
     agcttaataa tgtgtgagta gatgtgtcac ctgtctgaaa aattagctta ataatgcatt      5100
     gcttagtcta atattttatc atattggtta ggggagagaa aatgaaatgc tatgctgttg      5160
     gaagatgctg tgaacttttt gttacaaatt tctcaaaatg tatcagttca gccgcttata      5220
     actatcagcc cattgttgcc attgtgagat tttggagaat tgctgagatt gagggttagt      5280
     tatttttgtt tctattgtaa ttctatttac ttatgattat tatttgtatt atataatttt      5340
     aaatgaaact aatggaacag gtgagaatgt tttgaagagt gaatttggat gttcaagaat      5400
     ttacctcaat ccaaccaatt tccctgagat agatattcaa agctacatgt aagaatttta      5460
     tcactttttt attgtattcg ttaaccaaaa catcaattaa tcaataccga tttttgtttt      5520
     ttctctttta cagccgcggt ttcgaagatt atgatgaact tccaaagaac ccaaggatgg      5580
     aagtgattga agagaattag gagtttgacc tcccatctcc tattcttatt taaattatgt      5640
     ttcgaactta ttttaatttc ctgcaaactt tgtcattgta tgttattttt tattataaaa      5700
     aatatgctta tgctttgaac ttatttaagt aatgtattcc ctttttattt tcatatatct      5760
     tatgttttgt taaactccta acaaagttta caagtataac ataaaaatct acaaacaaac      5820
     tcatatataa atttgcaacg attacatata aatacagttg tagaattttt tatttcttta      5880
     aaaaaatact atccttttaa tttattttat ttcacatatc attatttatg attcttttca      5940
     aaaggaaatt aaaaaattat tgggtatcaa gaataaaaca ttaaaaactt tgagataaat      6000
     cattcttgga aacatcagga tcatttatta ttaagttcat ttcttttcaa ctcatgtcat      6060
     tgtcttatac aaaaagtaat cttaaatatt tggactcttt atatttataa ccctacaaaa      6120
     gcattatctt tcagtatcat gtctctcata ttaaaataat attgattttg aaaacctagg      6180
     tactcctttt aaagtttctt tttggatata gatgaaagtc acatcattac ctttgtgact      6240
     taaaaataat cgatacatat ataacagtta gaatttaatt tctaaggaat gtaatatata      6300
     tatatatata tatatatatc agtttattct aaatatattt tgctctcata catattttct      6360
     ggaataataa agtagatttt attgagtaga tacaaatatt aacatctata ttctcttcaa      6420
     tctatttatg agacttgctt tctcaattaa atctattgtt cacatctttt ctttccatct      6480
     tttccaagat tgataacaag attagacaac tcatccaaga gatatgacaa cttatgtcac      6540
     attttgtttc ttacaaaatt tattaaaatt cgcaagtaac cataaaaagc actataattt      6600
     accatcgaga ttccaaattc gattgacaag atttgcatgg catttaactt tttctattta      6660
     atatacaagt aatattcttt tgggcaaaaa aaaaaaatac aagtaatatt cctaaactgt      6720
     caaaggacac ataacctgaa aaaaggtaac ctcccctctt attttcatcc attacttatc      6780
     ttcgacatct ttcttctacc ctattagttt caaaaaaaaa aaagatgttg agagatgata      6840
     gaggtggtta ttttaaaggt atctcatatc tatctcaact ttctcaaaaa aaaaagattg      6900
     gaaggttttt gtgaagctac tatgttggtg ggtaacactt cctcatgagg gtgggaagtg      6960
     ttaccaaatg atcttgtgcg acgagatggt aatttgtttt ttgatctaat ctattaataa      7020
     tttaatagta ttccttggat ctaatctatt aataattcat aagtcaattt ttttttttag      7080
     ggcacaatga ttgatgccat ttgtgcttat ttctacactg gatatgacgt ccctagagtt      7140
     ctcaatgaag gaggttggtt tttcttggaa aacatacttc tgatcaaatc agtcggcggt      7200
     agaaaacctc ccttaactga taataagttg agaatcaagt tccttcagac taccaaaatg      7260
     actcctgtgc ctaatagaga accaagtaac tttttccgat ttgctgcctt ctctatgatc      7320
     gaaaacaaga ctattaattc ttcaactgtt catggtaact ttcttattta gatttttcac      7380
     taatataaag tctatttttt tgaaaatatt aatctttcat attatcgttt tttttgtttg      7440
     tagatgctta tggtattgtc gtgagagttg ggaatataac aagaccggac tttgtccctc      7500
     aagcttcaga aaatactata ctttctcaat ttctcgaatt tgagattaaa aattcttggt      7560
     tagtattttc cactatatag ttcgtcatct atttggttat atatttgaat gcacaaacat      7620
     agtaaatatt gttatcttta tagttggttt aattcataga acttagatgt tttggtggaa      7680
     taatttgata ttgttattag gggtaaatct ctcatatgtg ttgcaagcgg atatacttgt      7740
     gagttgtttg tgcaattatg gaggggactt ggtctagaac ttggttatca ctggaacttt      7800
     ggtatgaatc ctacaatctg tgtgctacga ttttggaatg ttgatgatca tgaaggtata      7860
     tttaagactc attttatgtt atctataatt tatatagcta cttcatataa taaaaacgtt      7920
     aatattttag gtcgtcaatg tctaatctca cataatggtg cttcaagaat tacattcaat      7980
     caaagttacc cagagattaa catggatcgc gtcaggtaag aacgtttata tttacattat      8040
     cccttaactg tttattgtat tttttaaaat tttggtcttg gttattttta atttttctat      8100
     tttcctactg tttcagaact caattccttc aacgaatgca aacacctgag ctagatgaag      8160
     ttgtggacga gaactgaaaa tgcaacacca gacccctatc tatcgttttg tttaaaaact      8220
     tatctacata tgttttaaag ttgtactttt aaagactttg tttatttttt tattgacttt      8280
     cttatgatta tttctgttaa actttaactt tattataact ccttttattt aatgcttact      8340
     aaataactat ataaccgtaa acttagatca aattataact gcttttagat tggccaatta      8400
     ttaggttatt ttgatttaaa taatgttgat attttattga ttttaataaa atgtatttgg      8460
     attgcaaatt ttgattacaa tgtaatctaa aatatgagtt agatatctac actattaaac      8520
     aaagaaaaat aaaaaccaaa ccttagagtt tattagaaga tttgtccaaa gaaatatgtc      8580
     gttaaaatca acatcgttag agaatcttct aagttgaaaa catttattat ttcaactctt      8640
     atatataagt gccataatag aattaaatta tagattctgt tgttaacaat atatttgcat      8700
     atatattgtt tcctaatttt taatcacttc cattattaaa aatattttaa aattttgtta      8760
     cttatttctc tccattatta ttaactttta tggaaatttt gttattatat gtctcaaaca      8820
     ttataggatc ctgtgattat tagtaattta tccacgcagt taagacaatt ggtatttata      8880
     taagaactcc aattaataat aaggatacaa tatttatatt atttcctaaa atataagact      8940
     cgccaaattt ttaattttat taataattga tttattcaaa atatattaca gaatcttcaa      9000
     gattacgaag tgacttgaaa cgtcatgact gttattactt tttaaaaaag ttgcgtctaa      9060
     aacatgcctc tacggtgtat ttgtctctta tatatatata tatcggtatc attagcatct      9120
     cataaaacga atacaaaaaa ataactaaga aatttctgcc aaaagatgga atcgtttcat      9180
     cctctttcac tgttgaaacc gtctattaga ggatggtgta ttcgtgggag agttgtgagg      9240
     acattcttag tttcgctggt tccatcttca aaggttatgg gtttgattct cgccgacgaa      9300
     catgtaagta ttgactgttt tgtaatgata attctaggtt tgcatgtttt agaattttga      9360
     ttagtatgtt tgatccgtag ggtatgacta ttgaagctac tgttgggtat aagatgtcgg      9420
     atcactataa agattttatt aatgaaggag aatgggtaac gataacaaat tttggagttg      9480
     ttgagaactc gggttctgtc agggcaacaa ctcatagctt caaaattgga ttttctgttg      9540
     acactgtcgt cagattaaca agtccggtac ccgctattcc tcactatcgt ctagcatcct      9600
     tctcttcgat tattgatgat gaaatcgata aatctgtttt agtcggtgag atttttatga      9660
     atttgttgtg ttccttattt tatatcatgc atcttagtgt tcattagttt tgtcattttc      9720
     aatatcaatt gtatatattt gactctgatt tattttaatt aatttatgta attttttgga      9780
     gacttggtgg gagcgatcta tgatgttgga gaattgatta acacaagacc taagcaaaac      9840
     aacgtcgatg atttgacgct aacattcaaa ataagtgaca atgagtaagt ttccttcttt      9900
     gatagtttaa ttcgaattac ctaaattata ctattctaat aatatttttg attttatgtt      9960
     tagaaaccgt gttttggaat gtctagctac taagaaggaa gctcttgact ttgatcataa     10020
     ttatcgtcga tatggtggtg gagttattgt cgctgttctt ggttggtgga agattgaccg     10080
     ttattttgat ggtccaaaga acgtacgtgt ttgcaccgca ggcccgatat caaccgtctt     10140
     tccggatcct gatattcccg agtctaacga gatccatgag atgtaagttt tgatctatca     10200
     tcaaatattc ttacatttcg ttattagtaa ttatataaac ggaatatcta tactattatt     10260
     tataattgca taccacattt gtttgttttg taggctccgt gatgaaggtg caaggaatgg     10320
     cggttgaaca tctacttaaa aaatgttttt acatgtagcc tattgaactc ggtctattat     10380
     tatttttatt tctgtatgaa caagtttcca tttttatttc tgtatgaaca agtttacata     10440
     tttcgaattt agaatacctt ctaaaacttg atatcttaca atatcgcatc gctattattg     10500
     acaaaattta atatgattca tcctaaaata aatcttagaa ggtatgacaa aatttaatat     10560
     caaagattat tgcttttttt ttaaacatct taatattgct ttatatatct aattctaata     10620
     tttatttatt cgtctgtctc tatcagaatt gcaaaattta gaaaaatata tttattattg     10680
     ctttggctta tgtctcatat aacataatta ttttatcaac aaatgttagt ttcacattct     10740
     gtaaatataa acatatataa aattagaaat tttctgatta tgagatactg ttaaacttct     10800
     ataacactta catacacgaa aatgtacaaa gctactatgt gtaaacctac atatacaaaa     10860
     tataaaatta cgttcccaaa cgtacatatc aacttagaca ttgtttccat gctacaaccc     10920
     gaggaaacta tatatactta ccaaaatatt gtttgacgag actaaatata tttattttat     10980
     tccaatgata catgatatac aactatatgt ttacatataa tgaaaataaa gtagagttta     11040
     tgtggaatac acagaactta tatttgatga ttgatttaac caaagatacc gtgcgtagca     11100
     cgggtactga cctagt                                                     11116
//
ID   ATREP9      repbase; DNA   ; ATH   ; 902 BP.
XX
AC   .
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATREP9 repeat - a consensus.
XX
KW   non-classified repeat; ATREP superfamily; ATREP9.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-902
RA   Kapitonov V., Jurka J.;
RT   "ATREP9.";
RL   Direct Submission to Repbase Update (00-APR-1999).
XX
CC   [1] (Consensus)
XX
CC   ATREP9 individual copies are 96% identical to the consensus sequence.
CC   Multiple diagnostic positions indicate the existence of several ATREP9
CC   subfamilies.
CC   ATREP9 shares common structural features with elements from ATREP
CC   superfamily;
CC   ATREP elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
SQ   Sequence 902 BP; 348 A; 107 C; 95 G; 343 T; 9 others;
     aatcatatat atgaaagttg gccaactctc tycatatggg tgacacatca tcacacaaga        60
     aaatracatg tgtcatttaa yattgattaa attaaaatya gcaaaattaa ttgagagaaa       120
     atcaaaagtc tcatattgtg ttaaatcctc cattaattca tttcttaaat gattttttca       180
     aaatawaaat aaaaataaaa ttayttattt aaataaatca attactactt ttattttact       240
     tttattattt tatatttttw aaaaatttaa tggtcaatgg tcatcactct ataatgacta       300
     aatagttgtt tgtgttgtag tttatttgtt tgctacctaa tattagtgta gttattttac       360
     cttgattttt tattattatt acgttatggt tcatatctta tcatatgaaa ttctgtmttt       420
     tcatttttgt atctttaggt aagttcgtaa cattgacatt caayattttc aagtaataga       480
     cttttgagac gttaaacata ccacaaaatt caaaacaaat ccatttgtct tatacggcta       540
     tatgcaatag tataaaatct aaaaagtgtt actaaaataa ctctttaatt tttgcttctt       600
     ttttttcata cgaaaactct tgaaatcaaa atatcttata ttcttgttgt gtgttcatga       660
     taatgaacaa attttagaat cttggatata aaaataatca gattatacat gaaaatatat       720
     aaaaattgat atttagagtc aaaaatgaat ctaaaatgta agtacataag atgagtctaa       780
     ttttactaag tataaaataa caaacaaaaa ataaacataa attagcgaca aaaataatta       840
     acatattttt atctaaagaa ttttcaaaac aaacccacgc gtagcgtggg aattcatcta       900
     gt                                                                      902
//
ID   HELITRON4   repbase; DNA   ; ATH   ; 17261 BP.
XX
AC   .
XX
DT   01-FEB-2001 (Rel. 6.01, Created)
DT   18-JUN-2001 (Rel. 6.05, Last updated, Version 3)
XX
DE   HELITRON4 is a DNA transposon, a consensus sequence.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; ATREP; helicase;
KW   replication protein A; HELITRON4; HELITRON class.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-17261
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON4.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
RN   [2]
RP   1-17261
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (00-MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [2] (Consensus)
XX
CC   HELITRON4 is a DNA transposon that belongs to the HELITRON
CC   superfamily. It encodes an 1526-aa protein, ATHEL4p, composed
CC   of the rolling-circle and DNA helicase domains, and three
CC   RPA70-like proteins, ATRPA4H1p, ATRPA4H2p, and ATRPA4H3p.
CC   There are five copies of HELITRON4 in the genome;
CC   they are ~95% identical to the consensus sequence.
CC   ATHEL4p is encoded by 12 exons (ATHEL4p CDS: 10079-10184, 10254-10502,
CC   10598-10684, 10921-10980, 11045-11483, 11587-12527, 12626-12839,
CC   12928-13233, 13320-13969, 14088-14936, 15274-15789, 16058-16221).
CC   The 741 aa ATRPA4Hp1 is encoded by 14 exons.
CC   (ATRPA4Hp1 CDS: 521-667, 771-1035, 1543-1630, 1711-1840, 1918-2117,
CC   2245 - 2368, 2451-2663, 2756-3058, 3775-3846, 3985-4255, 4354-4468,
CC   4550-4692, 4778-4862, 4954-5023).
CC   The 269 aa ATRPA4H2p is encoded by 14 exons.
CC   (ATRPA4H2p CDS: 5660-5797, 5890-6151, 6251-6365, 6461-6603,
CC   6701-6785, 6875-6941).
CC   The 236 aa ATRPA4H3p is encoded by 6 exons.
CC   (ATRPA4H3p CDS: 7812-7949, 8043-8313, 8424-8538, 8638-8675,
CC   8864-8948, 9026-9089).
XX
FT   CDS           0..0
FT                 /product="ATHEL4p"
FT                 /translation="MPAGIDLSSPIQSYRRHLTYDDNLPSDANDSQYPFG
FT                 NHRPNSNLSSSFTTTNLEQGETSNPSKDKRLFRNFTNDIPLQINGVTHCG
FT                 RGDRTDDPILPEFLQSGNQMNLGECDSNGESDGSESDIYDDLENGFQDEV
FT                 DYDSYTNYKQKGKEHEDFERQFNMNSRKNKTVYIDHGDPIYSCEYCGAIM
FT                 WHGERIEKTVKNKKPKFTSCCLQGQVKLPFLKNSPELLYALLTNDDEISR
FT                 HFRENIRAYNMIFSFTSLGGDTENSVRASGGPQMFQIHGENYHRIGSLKP
FT                 DNDIPPKFMQLYIVDTENEVDNRSEALSNGVNADKYKKKELRKEIIDAVI
FT                 KLLNSINPYVSHLRTARDRFNANPEETLHMRIVSKREKDGRVYNVPTASE
FT                 VAMLIPGDFTIDMPSRDIVVQEKSGKLQRISEILPCYLPLQYPLLFPYGE
FT                 DGFRTGIEKHQTGSGKKTKNKCISIRQWFAFRIHERKHEKHILLRSRRLW
FT                 QQFLVDSYTAIESNRLGYIKLNQSSLRADNYNSVQKASEEGKSDLKDQGL
FT                 ACYLPATFTGGPRYMRNMYLDAMALCKHFGFPDYFITFTCNPKWPELIRF
FT                 CGERNLRADDRPEIICKIFKMKLDSLMLDLTKRNILGKTSTSMYTIEFQK
FT                 RGLPHAHILIWLDSKCKLTKAEHIDKVISAEIPDKLKDPELFEVIKEMDG
FT                 SWSLWCGEPEMSIRRRTDDFVQKKDFKCDNRYVIPYNRSLSLRYRAHINV
FT                 EWCNQSGSVKYIFKYIHKGPDRVTVVVESSLNSKNKEKGKQKVNADTDGS
FT                 EPKKKNEVEDYFNCRYVSACEAAWRILKYPIHYRSTAVMKLSFHLPGEQF
FT                 IYFKGDEEVETVLNKADLDGSMFLAWFELNKVSKIARKLTYADIPTRFTY
FT                 DPKEKKFNLRKKGFAIGRINYVPRDIEDGYYLRILLNVVPGPRCFEELRT
FT                 VNGVLYKEWKDACEALGLLDNDQEYIDDLKRTSFWSSGWYLRQLFVIMLD
FT                 ALISPENVWAATWQHLSEDIQNDKRKYFNRPDLILSDEEKKLYALQEIDH
FT                 ILRRNGTSLTYYKTMPQVPRDPRFDTNVLILDEKGYDRDSLTKKHAEWIK
FT                 MLTPEQKSIYDNIIGAVNENVGGVFFVYGFGGTGKTFLWKTLSAALRSKG
FT                 DIVLNVASSGIASLLLEGGRTAHSRFGIPLNPNEFTTCNMKAGSDRANLV
FT                 KEASLIIWDEAPMMSRHCFESLDRSLSDICGNGDNKPFGGKVVVFGGDFR
FT                 QVLPVIPGADRADIVMSALNSSYLWSHCKVLTLTKNMRLYSEGLSVSEAK
FT                 DIKEFSEWILAVGDGEEFTFLSSDSLDPADIGGRNNPALTPDFLNSVKVS
FT                 GLPNHKLRLKIGCPVMLLRNIDPIGGLMNGTRLRITQMGPFILQAMILTG
FT                 DRAGHLVLIPRLKLTPSDTKLPFRMRRTQLPLAVCFAMTINKSQGQSLKR
FT                 VGIFLPRPCFSHSQLYVAISRVTSKSGLKILIVDDEGLLLSERFVKNFID
FT                 SMTATMKHPLSCPLNFRTSVLQLKNNSLHLYFGKLHKSIK"
XX
FT   CDS           0..0
FT                 /product="ATRPA4H3p"
FT                 /translation="MERMNLLSDIGVHSTKWSVYVKILGLCHHNPPRDGV
FT                 VTTMMLIDSKYNRIDATIQEGIIQWKYKDVLKEGFWYYMSDFRVVVNTMP
FT                 VRYSFCSKQIKFLRGTNMWHVPSLSTSRFFEFVAPIDVKNAAPQDMEFLS
FT                 DAMGIITRVSNIRRFPFVCRQRETDYEARYVKFTIADNMGKKIRCIAVGK
FT                 MCKNVLLSEFGFSKLYIDPKFEEIDIPTCLRGYMIEDDEDDVMMEVVEEN
FT                 "
XX
FT   CDS           0..0
FT                 /product="ATRPA4H1p"
FT                 /translation="MSLPLGLTYLSDVKPFKTNWRVRVKILHLWRQTKDA
FT                 SGETLDVIICDENGSKMQITIRKHYIGKFHRSIKVGDWKIIDNFTLSPST
FT                 GKYKISSLSYRMGFNHNTDVIKCDPVSDSVFLDLADFEGVKTESYDENVL
FT                 IGEISITSAFDVSEVIINPVHVPEVELFVKSLPSDGLALTIQDNYVNRDI
FT                 IKVKSDNFFDYPAKTIVDLLHGRDVGQWRILGSIFAIDTDWGWFYFGCPK
FT                 CNRKTELVKESTSTGKMVKTPMKPKFWCDKCQESITNVEARYKLHVRVMD
FT                 QTAEIKLMVFENNATKLIGKTSEELVDGQYEEIEDPTIIPDVITNLCGKT
FT                 FHFLVSVEKANIYGGKDIYKVTKVHFGTDIAKEESGLLEDTQYDPSTIGS
FT                 EEQGQLMLTNSSENCSDATNNELSTPSSKRGSAELSDMADQSSTTKKLCS
FT                 RVNSENGDDEIGTNVIIENADEVKVISDDAGSLLIEGVVKEIEPQTSKAK
FT                 GSTKLLRLWNWPPNYFGEEPTMILVDEKGHRIDALSPLHAYKEEMISTLR
FT                 EGKWYLLSNFEVVVANPLERFSSHVFQIKFLRKTTMEHVAPKIRCHFIEC
FT                 FDFYRIKNAAPIQKKFVVDAMGVIESVSPIGKIPWVAREWESDFASRYLT
FT                 FTIKDTLHQYMKCVAVGSSCEEFERKWYKKISDPNFKMEPVMIILRFWKI
FT                 LEFEGNPCLISVYGCSKVHIDPNFRGIDKNNYLRNFAGSDDEDDDIFMES
FT                 VESNF"
XX
FT   CDS           0..0
FT                 /product="ATRPA4H2p"
FT                 /translation="MADTNYIRDLSLHRNNHVLYVKILSIWDNQSMIFGT
FT                 PTTMILCDVKGTRIDARVPWGDYLNNFKPSLFEGKWYYIADFRLKRATSI
FT                 PKYSSFNYEIEFMWHTKMWPVSDRSDESSLQFIHADEVESESEDYVTDAI
FT                 GVISSVSTVARFPYVCREGETDYEARYVTFTIRDNLDRIITCVARGSACE
FT                 SFLTKFYRLIGMKTYNYEPITTVLRFFRASNFKGSKALISEHGCSRIFIE
FT                 ESFPDFDVTRYINWFACEDDGSVEGKIEYVVEN"
XX
SQ   Sequence 17261 BP; 5722 A; 2578 C; 3051 G; 5909 T; 1 others;
     tctatactat taagagagaa tgagggacag aaaatttcca agccatttaa gccattttcc        60
     aaaaacacgt tacaggaaaa aacaaacaaa acaaattaag ggtaaaagcg tcattatccg       120
     tgctcttcgc agccgacccg agccgcgtcc gtatccgacc cgtttgaatg acgcgcggat       180
     cctgattcac gtataatggg cctctattct atttctcatt tggcgtcaag gagaacagtt       240
     ggcccatttg cgttaaacac cactcttaga aaacatttct tgctcaatat tttgcctcct       300
     ttccaagata ttcttagttc ttgaagatat tctgcaaatc acaaccaatt aggtatgatt       360
     cctatattct attgagatag tatatttagt tatgatttca tataccaaaa aatccggtgt       420
     tgctctaggg tttcagaacc aagtcctaac cgtataaata ctcaagcaat atcatcaatt       480
     ctgtcagcat tacttttctt cgcagcctat cacataatca atgagtttac ctttaggttt       540
     aacgtatctt agtgatgtca agcctttcaa aacgaattgg cgtgtccgag tcaagatcct       600
     tcatctgtgg aggcaaacca aagatgcatc aggagaaacg ttagatgtca ttatatgtga       660
     tgaaaatgta tgagagaatg ctattgatta aatatatgaa tctatatata tttcggtttg       720
     aaacatttaa catgttctta tgtgtttttg tttatttggt tttgatatag ggatctaaga       780
     tgcagatcac cattagaaag cattatattg gcaagtttca caggtcaata aaggtcggtg       840
     attggaagat cattgataac ttcactttga gtccttcgac tggcaagtac aagatatcga       900
     gtttgagcta tcgaatgggc tttaaccaca acacagatgt gattaaatgt gatcctgtat       960
     cggatagtgt ttttcttgat cttgcagatt ttgaaggggt taagaccgag agttatgatg      1020
     agaatgttct aattggtacg tattttctaa attccctatc attcttttaa ctcaaacaaa      1080
     caagtgttat ggattttaat attaacagag tattctttac aatggcagac atattaggtc      1140
     aagtggtcag tgtgggaaaa gtggatgaga ttatggctca aaacaaacca aacaaaaaac      1200
     tagagtttca aataagagat gccaggcaag tcttctcaat tgttttcata taatttttga      1260
     ttcataataa ctatgttttc aaacaagtaa tattgaaatc gtttgttact atattgaagc      1320
     aatgagcgtt tgtcttgtac tttgtggggt gtgtttgctg agaaagtatt tagtgcttta      1380
     aaaagtgtaa agcatgacga gaagacagtg gttctgatac gctatgctaa aatcaataat      1440
     tttaaaggta ttcactcttc ccttaactat gtctaaagta atcatattgg atgtatatgt      1500
     gcatgtctta gttaacatat attgtctaat tctgttaact aggtgagatt agtattacaa      1560
     gtgcttttga tgtttcggaa gtcataatca atccagttca tgttcctgag gttgaactgt      1620
     tcgtgaaatc gtaagtgcaa aatatattat gaccttcttt gttctgttta aattcacaaa      1680
     catgttaacc agacaaatgc ttatttgcag actcccaagt gatggtcttg ctctcactat      1740
     tcaagataat tatgtgaacc gtgacatcat taaggttaaa tcagataatt tttttgatta      1800
     tcctgccaaa acaattgttg atttacttca tgggagagac gtaagtatat ttccactaat      1860
     tcctaaatta ctgtgtttag tttaagtacc tataattgtg attgtattga aaatcaggtt      1920
     gggcaatgga gaatacttgg ttccattttt gccattgata ccgattgggg atggttctat      1980
     tttggatgtc ctaaatgtaa cagaaaaact gagctggtta aagaatcaac cagcactggt      2040
     aagatggtca agacacctat gaaacctaag ttctggtgtg acaaatgtca ggagagcatc      2100
     acaaatgtgg aggcaaggta agaatgtttt ctattactct tttatcttgt acaagataaa      2160
     aaaaattgtt tctattggta tacagaaaat ataaaggttt ataagtgtat attaatttga      2220
     tatgtacaat acattttact ccaggtacaa gcttcatgtt cgtgtaatgg accagacagc      2280
     tgaaattaaa ctcatggtgt ttgaaaataa tgcaaccaaa cttattggga aaacttctga      2340
     agagttagtg gatggacaat atgaagaggt attaaatata tactgtcatt caagtattag      2400
     ctatatgtct atggtagaat gaagagtact aatgtgagac atgtctatag attgaggatc      2460
     ctacgatcat acctgatgtc atcacaaatt tgtgtggaaa gacattccat tttctggtca      2520
     gtgttgagaa agccaatatt tatggtggta aagatattta caaagttaca aaggtgcatt      2580
     ttggaacaga catagccaaa gaagaatcag gtttgcttga agacactcag tatgatccat      2640
     caacaattgg gtctgaggaa caggtatgat catattcacc ttaatacaat ttgttatgct      2700
     tattaagtgt tttgtactca tagaccaaat tatatttctc aattttgtga gttagggtca      2760
     attgatgtta actaatagca gcgagaactg ttctgatgct acaaacaatg aactgtctac      2820
     tccttcatct aagcgtggtt cagctgagtt gtctgatatg gctgatcaat cgagtactac      2880
     taagaagtta tgctctaggg ttaactcaga aaatggagat gatgagattg gaaccaatgt      2940
     gataatagaa aatgctgatg aggttaaagt tatttcagat gatgctggaa gtctactgat      3000
     agaaggagta gttaaagaga ttgagcccca aacctcaaaa gctaaaggat caaccaaagt      3060
     gaagacagaa agatacaagg aataaaatta gttatatgtt ttcacagttt ttttttggtt      3120
     ttggatttaa taaaagtcag aattttctga cttcgtttat gtttttcaat aagtattaag      3180
     aacattttca attgttattt tattgactat ttatgctgct ttatacattt acatgtattg      3240
     ctattttttt gagagatttt atttctggtt ttcactatct ttgttctact atatatttat      3300
     actctttatc ctaactctat tttcttattg aatagcaaag aaccggtttc gaaattatac      3360
     tgaaacagat gaaaacatca aaagatcttt ggaattttat agtcaatata cttgcatggt      3420
     atattaaata atttttgaaa agtaagatgt gatatatcag aaatataatt gttaaatctg      3480
     aattttcaaa aataaaccaa atcaatggat cttgaaaccc tcaaaagaag ctgtctaaat      3540
     tcaaaaaagt aatcattcat tggcaaaaat ttgaaattca tttctgatat aattattttc      3600
     gaaaaaataa gaagttacgt ttattggaaa gatcaataga ttctctcctt atctcattca      3660
     tcttccacac aagaaaaaac agtagagaag aaaaagagtt tttcttcaat gtcaaacttc      3720
     aagaacttct ctgatttgcg tcctaaaaaa acaaaatgtt ttgtctttgt taagctactg      3780
     aggttgtgga attggcctcc taattacttc ggggaagaac ctactatgat tttagttgat      3840
     gagaaggtat gaaacttcta tttacagttt ttatttctat aattgttgtt atttaccgga      3900
     tctcttgaat ataaacatcc atgcaatatc ttcgctgaga ttttatactc tatatatttg      3960
     atgagatttt atatatgatc tcagggacat cgaatcgatg cattgtctcc tctacatgca      4020
     tacaaagaag aaatgatttc tacactaaga gaaggaaaat ggtatctact ctcaaacttt      4080
     gaagtggttg tagctaaccc acttgaaaga ttctcttctc atgtgttcca aattaagttt      4140
     ttacgaaaga ctacaatgga acatgttgct cctaagataa gatgtcattt cattgagtgt      4200
     tttgatttct atcggatcaa aaatgcagct cctatccaaa agaaatttgt tgttggtgag      4260
     tattttagta gttattttcc ggattttaaa gtatagaatt tggcttacag atataaaatt      4320
     taaacttgaa tctttgttat tatcaattta cagatgcaat gggagtcatt gaatcagtat      4380
     ctcccatcgg gaagatacct tgggttgcta gagagtggga aagtgacttt gcatcaagat      4440
     accttacttt cacaattaaa gatactctgt aagtttttat actttctata ctattaagag      4500
     agatagttag gacttttgga atatttactg agttcacttc atattatagg caccagtaca      4560
     tgaaatgtgt tgctgtagga agttcttgtg aagagtttga aagaaaatgg tacaagaaaa      4620
     taagtgatcc taattttaag atggagcctg tgatgattat tctgcgtttt tggaaaattt      4680
     tagagtttga aggttagttt cttattactt cttagtctga tttttctcga gatcatttga      4740
     catttatgat tttcaaattc gtgtgattgt ttaacaggaa atccatgctt gataagtgtt      4800
     tatggttgtt caaaggttca cattgatcca aatttccgag gaatcgacaa gaacaactat      4860
     ctgtaatcta cagccttatt cttaagcatc gtttattcca tatgtagtat atatagatat      4920
     taactttgtt tgtttttggt atctgtttcg taggcgtaac tttgcaggat cagatgatga      4980
     agatgatgac attttcatgg agagtgtgga gtccaatttc taagttatcg atttacaatt      5040
     tgaattatga gaaaacaatt gtgctatgct ttatgaacta tgtttatttt cttctgttat      5100
     aagttggatt tcctgtgact actttatatt attttgctta tgtttgctta tgtttaccaa      5160
     cttctagcat gaaatggatt acaacccatg ataactaaaa tgacaagagt aaaagaagaa      5220
     tcatattacc ttaatgcagt gtgctatctt ctccgacttc aaattcctga aattatagta      5280
     agacaacaat gttagtatat ttactaaatt gtttagatta aatactgaag aattcgtttg      5340
     ggatctaaaa cataagcaac cattatttat atgtctactg aatccaaata ctttatcatc      5400
     attatctact taacatatca gcaatcatta gcaaagagac ttttctattt ttttgattgg      5460
     ctacagaatc ggttagcaaa taattatata ttgactaaag gatttgaacg gttatattat      5520
     atggaaacct ttcatataga ttcactgaat cgtttcaact ttcctctcca ttcaatatat      5580
     atatataaga caaagattag gttaacttca gtcaatctat cctctctctg aaatctgtat      5640
     caaaccattc aaacttccaa tggccgacac aaactatatc cgtgacttaa gtttacacag      5700
     gaacaatcat gtcctatacg tgaaaatctt aagcatctgg gacaatcagt ctatgatctt      5760
     tggaactcct actaccatga tcctctgtga tgtgaaggtt tgtgcgtaaa caatcttttt      5820
     ggtttcttat tttggttttt ggtttctatt atagttcaaa gaattttata tgtttgtctt      5880
     tttattcagg gaaccagaat cgacgctaga gtaccttggg gggattattt gaacaatttc      5940
     aagcctagcc tatttgaagg aaagtggtat tacattgctg acttccgatt gaagagagca      6000
     acttcaatac ctaagtactc atcatttaat tatgaaatcg agtttatgtg gcacacaaaa      6060
     atgtggcctg taagtgatag atctgatgaa agttctctcc aattcatcca tgctgatgaa      6120
     gtcgaatctg aatctgagga ttatgtaact ggtaatctaa gacttattta tatagtttat      6180
     gctttcttgc aattgtattt ccttagtact aagatttata agtatctgtt tgctctgctg      6240
     ttattgttag atgctattgg agtcatatca agtgtctcaa ctgtggcgag gtttccatat      6300
     gtctgtcgtg aaggggaaac agactatgag gccagatatg tgacatttac catcagagat      6360
     aatctgtaag ttaacaagta atatgtatat tgatattgaa attcgttagg aacagacata      6420
     tatttgtagt atggtaaatt tgtattttgg ttggttgtag tgataggatc ataacatgtg      6480
     ttgctagagg gagtgcgtgt gagtcgtttc tgacaaagtt ttatcgactt attggtatga      6540
     aaacttataa ctacgagcca atcactacag tcctccggtt ctttagagcc tctaatttta      6600
     aaggttagtg aaaattcgtg aatatgttag tcacattcct ttatgatgtt aaaccctgtg      6660
     acctataact aatcaccaga attctttaca aatgttctag gatctaaggc cttaatcagc      6720
     gagcatgggt gttcaaggat cttcattgag gaatcttttc cagactttga tgtaacacga      6780
     tacatgtatg tgaaagacat tagataaatt gtttttgtta attagatact aactattcaa      6840
     gtcaaaatga catcttttta tatttttgtt acagcaattg gtttgcatgt gaagatgatg      6900
     ggtctgttga agggaagatt gagtatgttg ttgagaacta atccaagagt cagattcgtc      6960
     tttccaatga tttgtagaag caatttacat tgctgttaaa aatcaaactt attatttcta      7020
     agttgatttt ggttttatct gatgaactat tgttggaatg tttgtttgaa ttatcataca      7080
     ttgtgttctt tttttttttt atggtttcag tttccagttc tcctatttga tgttgcaagt      7140
     tactatgttt attttcccta tgttttgtat tttctttaag catgtaagac tcataagcgt      7200
     ttgagtttca aatttctgtt aaaaatatta aatttccggt tattttattt tggttataac      7260
     ttagttcata tttacagagc attttcttat acaatctaag agttattagt atctaacctt      7320
     agatggaaat gatgagttcc actctttagc tcttcttctg taaaaaagga aaaatatgtt      7380
     aataaattag taaatttaat tcaagttcta ttacataaaa agtaaaatta caatacattg      7440
     aaacctccaa tacaagacaa aattcaaatt acctatatag tatcaatatg tatatactct      7500
     ttccataaca atatatgata tcttaactaa aatattctta gaatatactc tctaatatat      7560
     taagttcgta taaataacaa acttggcgat tacacttaaa attatatatt atatctatat      7620
     attaataata tttaatcaat atataacgtt tcagtttctc gatttttgga tgttctagaa      7680
     ctgttttctc aatgattgca actcttcaat ctgctataaa atagacaatt ccgactttgt      7740
     gtttacagtt tacttttatt tttctttgag tcttcctcta atttagagac cgacacgagt      7800
     tatcaatctc aatggagagg atgaaccttt tatctgacat aggtgttcac agtactaaat      7860
     ggagtgtcta tgtgaagatt cttggtctct gccatcataa tccaccgcga gatggtgttg      7920
     taaccacgat gatgctgatc gattcaaagg taagtttata aattagcata tcttacactg      7980
     tgacttgatg gtatttgaaa ccctaaattt ctaaatttaa taattttgta atttttatgt      8040
     agtataatcg aattgatgca actattcaag aaggcatcat tcagtggaag tacaaggatg      8100
     tactcaaaga gggtttttgg tattacatgt ccgactttcg agttgtggtt aataccatgc      8160
     ctgttagata ctcattttgt tcaaaacaga tcaagtttct cagaggaaca aacatgtggc      8220
     atgttccttc tctttcaaca agtagatttt ttgagtttgt ggctccgatt gatgttaaga      8280
     atgctgcacc gcaagatatg gagtttctat ctggtaatct cttattttct atttgagatc      8340
     atatggtact ctgttttcta taacttattt tcaactttat atcatgtttg ttctcttaac      8400
     ttacattata ttaaacgttt cagatgcaat gggtattatt acaagggttt ctaacattag      8460
     gagattccca tttgtctgtc gtcaaagaga gacagattat gaagcaagat atgtgaaatt      8520
     cacgattgcg gacaacatgt aagtcttttc ttaaggaaca atattttagt ctatttctac      8580
     tcttagaaga taatcattaa taatgtggtt agtgatgata ttgagttttc tttctagggg      8640
     aaaaaagata aggtgtattg ctgttggaaa gatgtgtgag tggtttgtga accactggtc      8700
     aaagagaatc agtttgatta cttacaatta tgaaccaatt gtcgctgttc tccaaaactg      8760
     gagaatcaca aattatcatg gtcattactt tgaatttgac ttctaaataa tactaaagat      8820
     tctgtcttca ttataatatt aacatgtttt taaaatatta caggtaagaa tgttctcctg      8880
     agtgagtttg gcttttcaaa gctatacatc gatcctaaat tcgaagaaat tgatattcca      8940
     acttgcctgt aagtatatat attttggctt tttttatact ttaattgtta acattactaa      9000
     ttgccaagat gattttgaaa tgcagccgcg gatacatgat tgaagatgat gaggacgatg      9060
     taatgatgga ggtcgttgag gagaactaaa gctatgatga agtgtgtgtt tggtttttat      9120
     ttttttaaag ttaaactctg ttctttttgt ttctttctat ctctcttaac gtgtcgattc      9180
     tattctattt tgtaatggtt taagaatgct ttatttgatg tatattaatc tatgtgaaat      9240
     caaaagtttc ctatcaaatg ttaataactt agttcttata aaaaaaacaa gaatttacct      9300
     taaaataagt agtcattggc ttatagactt gagaagaatt cataccaaga aagactctcc      9360
     caaccacaat tatttccttt agtgctcgag ttgatcctat aaaaaaaaaa aaagatcttc      9420
     atagattaga aaatgaataa tcgaattctc tttaagaaaa caaaataaca aagtttaaat      9480
     agatttaaca ataaattgga tcatgtaacc aattaataat tgtttccata taaatagttg      9540
     atatcttaat cagtttagtt aaataacata acagcaaata ttctgtcaat cttttctggc      9600
     cggagaacaa agaaaagagc acataactag gttaacatat tatagaaaag tcatttctca      9660
     taaggttttg agtgtttagc tatcacgttt tcactggtat cttttctttg ttctccatgt      9720
     caaaaagaaa aaaaattcat gaaactcaat cttcagattt gtctaatgtt attcaaaaca      9780
     caactgataa gcggtttaga catgaagaaa cttctgaaaa tacacccccg tcattcaatg      9840
     gaccaagtgt gaagaaatca gtgccagtta gttctgtttt taatagggtt ctaagtgata      9900
     ttacaaatca aagagttcat acaccaagca ttagccaaac gcctggcact ttggagtcat      9960
     gtttaacatc aaaaacaagt taagtttact gatcaatcta tattatatat ttaagcttta     10020
     taggttgtcc tatataacat aactacattt aacaagattt atttatgaaa tgttaacaat     10080
     gccagcagga atcgatcttt caagtcctat tcaatcatat cgaaggcatt taacatatga     10140
     tgataatcta ccttcagatg caaatgattc tcagtatccg tttggtaagt catggtttac     10200
     aacttggtga gtctcatgtt gtttaatact atctaacgtt ttgttatatt caggaaatca     10260
     tagaccaaat tccaacctaa gttcttcatt cacaacaact aatttggaac aaggagagac     10320
     atcaaacccg tctaaagata aaagattgtt tagaaacttt accaatgaca ttcctcttca     10380
     gataaatggc gtcacacatt gtggacgagg agacagaacc gatgatccca ttcttcctga     10440
     atttctgcaa tcaggaaatc aaatgaattt aggagaatgt gacagtaatg gagaatcaga     10500
     tggtaaatat taagcataac tgcaatgatt tccttattct tcactgttaa aataaactat     10560
     agtatgtgat gtataataaa cttttcttat tttttaggtt cagagtctga tatatatgat     10620
     gatcttgaaa atggttttca agatgaagtt gattatgatt catataccaa ctacaaacaa     10680
     aaaggtgtca agattactga actggttaaa aaaaaattat gagtttttgg atgatcttga     10740
     gaagagtttg cttgccactt ttggcctggg atgtcgtacc tctaatgaaa atatagagga     10800
     acattcttac ggtgtgttat attcaataaa ctttgtaaat gaattataat aaactttttg     10860
     caaatgctca atcaaggttg taacaaatct acaagctcta atgacatcta tgtttcacag     10920
     gaaaagaaca tgaagacttt gagcgtcaat ttaatatgaa ttcaagaaaa aacaaaacag     10980
     gtatgaatat atattagtac tctgtgtatc ctctatattt aacattttat gatttcaaat     11040
     gcagtataca ttgatcatgg tgatcctatt tactcatgtg aatattgtgg agctataatg     11100
     tggcatggtg agcgtattga aaagacagtc aagaataaga agcccaagtt tacatcatgt     11160
     tgtttgcaag gtcaagtgaa gttacctttt cttaaaaatt caccagaatt actttatgca     11220
     ttgctaacca atgacgatga aatcagtaga catttcagag aaaatatcag ggcttacaat     11280
     atgatatttt cttttacatc acttggtggt gatacagaaa atagtgttag agccagtggt     11340
     ggtcctcaaa tgttccagat tcacggagag aattaccata ggatagggag tttgaaacca     11400
     gacaatgata tacctccaaa gttcatgcag ttatatattg tagacacaga gaatgaagtt     11460
     gataacagat cggaagcact caggtgagtc cattccttat agtgttacta atgtttttgt     11520
     atataacatt gatgttgttt taatattggt tactgttcta aatttgactt atttgattct     11580
     taacagtaat ggtgttaatg ctgacaagta taaaaagaaa gagttgagaa aggaaattat     11640
     tgatgctgtg atcaaattgc tgaatagtat caacccttat gtatcacact tacggactgc     11700
     tagggacagg ttcaatgcta atccagaaga gactttgcat atgagaatag ttagtaaacg     11760
     ggaaaaggat ggcagggtgt ataatgtacc aacggcatca gaggtagcca tgttgattcc     11820
     aggagatttc actatagata tgccaagcag agatatagta gtgcaagaga aatcagggaa     11880
     actacaaaga attagtgaaa ttcttccgtg ttatcttcct ttacaatatc ctcttttgtt     11940
     cccttatggt gaagatggat tcagaacagg cattgagaaa catcaaacag ggtctggtaa     12000
     aaaaacgaag aacaagtgca tatctataag gcaatggttt gccttcagaa ttcacgaaag     12060
     aaaacatgag aagcatattt tacttaggtc gagaaggcta tggcagcaat tcttggtgga     12120
     ttcttataca gcaatagaat ctaaccggct tggttacatc aaacttaacc agagtagttt     12180
     gagggcagat aattacaatt ctgtgcaaaa ggcttcagag gaaggaaaga gtgatttgaa     12240
     agatcaagga ttagcatgtt atttgccagc tacttttaca ggtggtccta gatatatgag     12300
     gaacatgtat ttggatgcga tggcattgtg taaacatttt gggtttccag attattttat     12360
     cacattcact tgcaatccaa agtggccaga gctgattagg ttttgtggtg agcgaaactt     12420
     gagagctgat gatagacctg agattatatg caagatcttc aaaatgaaac ttgattctct     12480
     gatgcttgat ttaactaaaa gaaacatact agggaagaca agtacatgta agcagatttt     12540
     aatttgtttc atttactctg aaatattatg tctattatta tttttgataa ctataataat     12600
     tattatgttt tctgtgtaat tgcagctatg tatactatag agtttcaaaa aagaggactc     12660
     cctcatgctc atatactaat ttggctggat tcaaagtgta agttgaccaa agcagagcac     12720
     attgataaag ttatatcagc agagattcct gacaaattga aagaccctga gctatttgaa     12780
     gtgataaagg aaatggatgg ttcatggtcc ttgtggtgtg gtgaacccga aatgtccatg     12840
     tatggaaaac ggaaagtgtt caaagtttta tccgaaagat catgttcaaa aaacaattat     12900
     tgataaagaa ggatttccaa tatacagaag gcgaagaaca gatgactttg ttcagaagaa     12960
     agactttaaa tgcgataacc gttatgtcat tccttataat agatccctat cactgagata     13020
     cagagctcac atcaacgtgg agtggtgtaa ccaatcaggt tctgtgaaat acatattcaa     13080
     gtatattcat aaaggaccag atcgtgttac tgttgttgtt gaatcgtctc taaattcgaa     13140
     aaataaagaa aaaggtaaac agaaggtcaa tgctgataca gatggatcag agccaaagaa     13200
     gaagaatgaa gtcgaagact atttcaattg caggtatgtt taattaaaat tttaatagta     13260
     ttattcctgt taaatacatt tatttatgtt ccttatgatt gtataatttt gcatttcaga     13320
     tatgtttctg cttgcgaagc agcctggaga atattaaaat atcctataca ttatagatct     13380
     actgctgtga tgaagctttc gttccatttg ccaggggaac aatttattta tttcaaaggc     13440
     gatgaagaag tagaaacagt gttaaacaag gctgatctag atggctccat gttccttgct     13500
     tggttcgaat taaataaagt tagtaagatt gctaggaagc tgacttatgc agacatcccc     13560
     actagattta cctatgatcc aaaagaaaag aaatttaatc tcagaaagaa aggctttgct     13620
     ataggaagaa taaactatgt tcctcgtgat atagaagatg gatattattt gagaatactt     13680
     ctcaatgttg tgccaggtcc aagatgtttt gaagagctaa ggacagttaa tggtgtgcta     13740
     tataaagagt ggaaagatgc ttgtgaagca ttaggcttat tagataatga tcaggaatac     13800
     attgatgatt taaagagaac aagtttttgg agcagtggtt ggtatctacg tcagttattc     13860
     gtaattatgt tagatgctct aattagtcct gaaaatgtgt gggctgcaac gtggcaacat     13920
     ctctctgaag atattcaaaa cgataaaagg aaatatttca acagaccagg taacatctaa     13980
     tatcatttca aaacctcaat tttatctcat tttgttatac aatgcaatat tgataataaa     14040
     cttgctttgc taaattgtaa ctcatttagt tatctgtttg tttacagatc taattttgtc     14100
     tgatgaggag aaaaaattat atgctctaca agagatagat cacattttaa gaaggaatgg     14160
     tacttcactt acatattata agactatgcc acaagtacct agagatccta ggtttgatac     14220
     taatgtcttg attttggatg agaaagggta tgatcgtgat agtttgacaa aaaaacatgc     14280
     cgaatggatt aaaatgctta ctccagagca gaagtctatt tacgataaca ttattggtgc     14340
     agtgaatgaa aacgttgggg gagtattttt tgtttatgga tttggaggaa caggaaaaac     14400
     atttctttgg aaaacactct ctgctgcact taggtcaaag ggtgacattg ttcttaacgt     14460
     tgcttccagt ggtattgctt ctctcctttt agaaggaggt aggacagctc actctagatt     14520
     tggaattcct cttaatccta atgagtttac tacatgtaat atgaaagctg gttcagatag     14580
     ggcaaattta gtcaaagaag cttctctgat tatatgggat gaagctccaa tgatgagcag     14640
     acactgtttt gagtcattgg ataggagttt gtcagatatt tgtggtaatg gtgataacaa     14700
     accgtttggt ggcaaggttg ttgtctttgg aggtgacttc agacaagttc taccagtaat     14760
     ccccggtgct gatagggcag acatagttat gtctgccctt aattcatctt acctatggag     14820
     tcattgcaaa gtattgactc tgacaaagaa tatgcgtctt tattctgaag gtttgagtgt     14880
     tagtgaagcg aaagatatta aagagttttc agagtggata ttagcagtag gtgacggtag     14940
     aattggcgag cctaatgatg gggaggcttt gatcgatatt ccttctgaat ttcttattac     15000
     gaaagcaaaa gatccaatac aagccatatg cacagagata tatggagata ttacaaagat     15060
     acatgaacaa aaggatccag ttttttccaa gaaagagcaa tattatgtcc caccaacgaa     15120
     gatgtcaacc aaataaatga gaccatgctt gataacctcc aaggttatta ctaattcaga     15180
     agcattgatt tgaaacttta tttacttata ttaatagtgt ttctatttcc tatttcttct     15240
     ataactgtaa ctaaccaaaa ttttaatttt caggagagga gtttacattc ctaagttcag     15300
     acagtttaga cccagctgac attggtggta gaaataatcc ggcattgact cctgactttt     15360
     tgaatagtgt taaagtttca gggttaccta accataagct tcgtctaaag attggttgtc     15420
     ctgtgatgtt gctcagaaat attgatccta taggtggtct aatgaatggc acaaggttac     15480
     ggatcacgca aatgggtcca ttcattttgc aagcaatgat tctaaccggt gacagagctg     15540
     gtcatttagt attgattcca agattgaagc taacaccatc agacacaaag ttgccattta     15600
     gaatgcgaag aacacaacta cctttagctg tttgctttgc aatgactatc aacaaaagcc     15660
     aaggacaatc tttgaaaaga gtaggtattt ttctacctag gccttgcttt tcacacagcc     15720
     aactttatgt tgccatatcc agagttacat caaagtcagg attaaagatt ctgattgtgg     15780
     atgatgaagg taagccacaa aagcaaacaa aaaatgtagt tttcaaagaa gtttttaaga     15840
     atctttagtt tccatttgtt ttttacttct gttggattct tatcatgtca gtcttatatc     15900
     tacaatattc gttgaacatt tgctacttca atctaagaat ttacactatc aaatacagat     15960
     tctaaccggt gttacttaaa ttatctatat atcaaccata tcacacaaat gcagactttc     16020
     tacttgctta aagattaaga accatgtacc ttttcaggat tgttgttgtc tgagaggttt     16080
     gtgaagaatt ttatcgattc tatgactgcc accatgaaac atccattgtc atgtcctcta     16140
     aacttcagaa catccgtact gcagttaaag aacaattcgc tgcatttgta ttttggcaaa     16200
     ttgcataaat ctatcaagta aaacagaaca atcaagattc acaattccat tcaaatttgt     16260
     ttaccttctc aatatcacat ttaacataac gaaatgtgat cagcggaaga tgaatcagaa     16320
     ttcggacaac gccaatagac taaactccaa tcaccagatt ctgaatttga aagaccatta     16380
     cacttcgcct tctccattga tcaaaatttc aatcgaattc gataagatct gatgaaattg     16440
     tgtgattaat ggaagaaaga aaatgatcag atttgttgat atccgaaaaa cccagtaaat     16500
     cgattcgaat tctgcaatcg aattgaagga agctcaatgt caaaaaaatg aacttaagat     16560
     ccattcccgt gttttatcga atagcatgtt ttgttracaa ttataacact ctttttttct     16620
     attggttagt caaagtgtca taaaaatagg ttgtttgttg tttttgttat ctttaattaa     16680
     gtatagatga ttttgaaact tttacagaat aaaaggttta tgaataattt agaaatcaca     16740
     tattgttttt attttgtttt gtgattttgt tttcaactta taaaattctt aattaaaata     16800
     tataatacac atgaaaaaat aaattcactt tcattcttat aattattcat aataaaattt     16860
     accttatctt cattactaat aaaataacaa aatgtaataa acaaaatttc tctaacactt     16920
     gacaaacata gattataata tataatacta tactaaattc atatataaaa ttccttccaa     16980
     taaataaatg catatcaaaa caaatatact ccaatactat aattaataaa tctaatattt     17040
     caaccatttg ctacaatata attttctata caaaatgatg agtgtcaaca catatattat     17100
     tataataaat attacaaaac cataagataa aaaaacaaaa aactaaataa ataccataat     17160
     acaattaaaa cgtcatagta caatagtttc caaaacttcc cgcaacatgt atttatatat     17220
     caaaatttaa cacccgggcg aagcacgggt tatcaatcta g                         17261
//
ID   ATIS112A    repbase; DNA   ; ATH   ; 5099 BP.
XX
AC   .
XX
DT   01-FEB-2001 (Rel. 6.1, Created)
DT   06-NOV-2003 (Rel. 6.4, Last updated, Version 2)
XX
DE   ATIS112A is an autonomous DNA transposon.
XX
KW   Harbinger; DNA transposon; Interspersed Repeat; TIR;
KW   3 bp-long target-site duplication; Autonomous DNA transposon;
KW   transposase; ATIS112A; Harbinger superfamily.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5099
RA   Kapitonov V.V., Jurka J.;
RT   "ATIS112A.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
RN   [2]
RP   1-5099
RA   Kapitonov V.V., Jurka J.;
RT   "ATIS112A is an autonomous DNA transposon.";
RL   Repbase Reports 3(10), 182-182 (2003).
XX
CC   [2] (Consensus)
XX
CC   ATIS112A is an autonomous DNA transposon.
CC   There are several copies of the transposon in the A.thaliana
CC   genome which are more than 90% identical to each other.
CC   They are bordered by 3 bp-long target site duplications.
CC   ATIS112A has 25 bp-long terminal inverted repeat.
CC   ATIS112A encodes two proteins, ATIS112A-1p and ATIS112A-2p.
CC   The 320-aa ATIS112A-1p is a putative DNA binding protein that
CC   includes the SANT/myb/trihelix motif. The protein is encoded by
CC   3 exons (834-922, 1262-1444 and 1498-2188).
CC   ATIS112A-2p is a 484-aa Harbinger-like DNA transposase, which is
CC   related to the transposase encoded by the bacterial IS112/IS5
CC   transposons (pos. 3583-5034).
CC   There are several other highly divergent families of Harbingers
CC   present in the A. thaliana genome [1].
CC   Originally, the transposon was described by [1]. The consensus
CC   sequence derived by [2] encodes the complete transposase.
XX
FT   CDS           0..0
FT                 /product="ATIS112A-1p"
FT                 /translation="VIWRICNKVCCFLIEYNPNAKVVGLRSNASFINLLN
FT                 SQDDSHILPPNPYECFELGSANVPVYSTEWSDDDPSEDEAPIAGKKGRKG
FT                 RKGRNGWLNTSKDPVVGNEQKGAAFWERIAAYYNSSPKLKGVEKRGHICC
FT                 KQRWSKVNDVVNKFVGSYLAASKQQTSGQNDDDVVSLAHQIFSKDYGCKF
FT                 TCEHAWRELRYDQKWIAQSTHGKAKRRKCEDDSEPVGLEDKEARPIGVKA
FT                 AKAAAKAKGKGKLSPDEGEETNALKEIKSIWEIKEKDHAAKEKLIIIKEK
FT                 KNRTKLLERLLGKTEPLSDIEIELKNKLINELLA"
XX
FT   CDS           0..0
FT                 /product="ATIS112A-2p"
FT                 /translation="MAGSSSNYNLDDMFDDKFDQCFDQALESYGNRQRVK
FT                 PRKKKAYIERNREEGHIQLVNDYFTENPTYPPHIFRRRFRMNKPLFMRIV
FT                 ERFSNEVPYFKQRRDATGRLGFSALQKSTAAIRMLAYGIAADAVDEYLRI
FT                 GESTSLLCLEHFAEGIINLFGDEYLRRPTRDDLIRLLHIGEQRGFPGMIG
FT                 SIDCMHWEWKNCPTAWKGQYTRGSGKPTIVLEAVASQDLWIWHAFFGPPG
FT                 TLNDINVLDRSPVFDDILQGRAPKVKYVVNGKDYNLAYYLTDGIYPKWAT
FT                 FIQSISIPQGDKASLFATTQEACRKDVERAFGVLQARFAIVKHPALFHDK
FT                 VKIGNIMRACIILHNMIVEDERDGYTQFDVSEFVHPESASSSQVDFTYAT
FT                 DMPSNLGNMMATRARVRDRIKHEELKADLVEHVW"
XX
SQ   Sequence 5099 BP; 1536 A; 851 C; 1017 G; 1695 T; 0 others;
     agcaagtcta gcaagggttt ttagtgggtt tctatgttgg gttttttaaa aaaaatgggc        60
     ccggatgaaa aaaaacagaa caatccattt aggatcgttc ctaaaattgg gtttttcgcg       120
     acccaataga aactcatacg tggcttcatt ttattgggta aacgttttga ctaaacaaaa       180
     aaaaaaaaca cgcgtttttt tgttttcttc ttctctctga tttcttcgtg gtcgccgacg       240
     gagaccccaa atcgattctg cttctaacca aatcgaaacc ctcatcatgg ttcgtatctc       300
     ttcttcttcg aatcgatttg attttatgag ctttgaaatt gaattttgaa agagattatg       360
     atctgattgc attggtatgt atattgaatt acgaattctg ggaattttta gttcgtgtac       420
     taagcttgag ctgcatatgt tgttattagc ttgttcttag ttttctatat gtttgcttca       480
     ttctcagtga agtcatattg ttgtttctat attaacatag aaatttcaga tctttatgtg       540
     tttgttctgt agctttgttt gtacctatat ccttcaaaga aaaacttacg gattcaggta       600
     tatgttttgt tgtggtagat agaggagcat tatgtggctc aaggtttaag tattgttgga       660
     tactttgatt tggttgtctg aaaagtttag atgtcgtgta ttcattgcat aaactggctt       720
     ttgcttgtta atctttcaag ccttcaaagc atctggacaa cgattttgca ttatgtattt       780
     gatcttttgg tagttcgttt taattaagtt tttgtttcta tattttttct gaggttattt       840
     ggaggatttg caacaaagtt tgctgcttct taattgaata taatccaaat gcaaaggtgg       900
     ttggcttgag atcgaatgca aggtaattta tcattttgta tttatttatg tgatcaatgc       960
     tttgctgtta tttactgtga taaatgcttc tttgttgata taaaactgta gttagataaa      1020
     cgtcaattgc ttttgtaggt aaacgtcaaa tgctagttct tatagcattt aaaactgtaa      1080
     aactgtgatg attgcttggt aggttaattt tagtcaatag tatttagtat ggcattgatt      1140
     gtgagttgtc taacaaagcc ataatttgcc tttaaaacac aaaaccgtaa cctttgattt      1200
     ttaaaacaca caaccacaaa caataatatg attcaccgaa tccatatcat catacttcaa      1260
     gctttataaa ccttttgaac agtcaagatg acagtcacat tctcccacca aatccatatg      1320
     aatgctttga acttggatca gcaaatgtcc ctgtgtatag cactgagtgg tctgatgatg      1380
     atccaagtga agatgaagca ccaattgctg ggaaaaaggg aagaaaggga agaaagggaa      1440
     gaaagtcaag aaaccaaaga ggaattggtc atcaactgaa gatgttgttc tcataagtgg      1500
     gtggctgaac acttccaagg atccggtggt gggcaatgag caaaaggggg cagctttctg      1560
     ggaacgtata gcagcgtact acaactcaag tcccaagctc aaaggtgtgg aaaagagagg      1620
     ccacatatgt tgtaaacaaa ggtggtcaaa agtgaatgat gttgtgaaca agtttgtagg      1680
     gagctacttg gctgcaagca aacaacaaac aagtggtcaa aatgatgatg atgtggtgtc      1740
     tttggcacat cagatcttct caaaagatta tggctgcaag tttacttgtg agcatgcttg      1800
     gagggagctt agatatgatc aaaagtggat tgctcagtct actcatggga aagcaaagag      1860
     aagaaaatgt gaagatgact ctgaacctgt tggccttgaa gacaaggaag ctcgtcccat      1920
     tggtgttaag gcggccaaag ccgcagccaa agccaaagga aaaggcaagc taagtccgga      1980
     tgaaggtgaa gaaaccaatg ctttgaagga gataaaaagt atatgggaga taaaagagaa      2040
     agatcacgct gccaaagaga agctaatcat tattaaagag aagaaaaata ggactaagtt      2100
     gcttgagcgt ctgttaggga aaacagaacc tctatctgac atagagattg aactgaagaa      2160
     caagttaatc aatgagttgt tggcttgagt ttcagttgta ggttaagtgt ctgtttctag      2220
     attatggttc tctaagtgtc tgttttaact ctgtttttaa gtttagtgtc tgtttcaagt      2280
     gtgtttttat atttagtgtc tgttttttgt ctatgtttta tgtttaagtg tatgactatg      2340
     ttaatcaatg agttgtttca gtttatgagt ttgagttgtt tcactttggc actttcagtt      2400
     tcagtttatg agtttgagtt gtttgacttt cactttcact tcagttctgt tctatttttg      2460
     atctagtctc caagcttact tggtatttta ctgatgcaga acatgtgaga aagaagaaaa      2520
     tgaagagcca acaaaacaaa agttaggtct tgttccagac gaccagtttc ttgctcaaaa      2580
     tccggttaag ttttcttctg actcttacct tttttttttt tttttggttg tatcttatta      2640
     gcagtcatac atttgcagaa taacagaaca gtaggattat ggtttctatt ttagtcaact      2700
     ggttaacgag cttggttgtg ctttggatct tcagtgtgga gttttattat tagttttctc      2760
     gcacaaattt cttcatactg tatctgttct aaaaaattat ggctatgtag gaatagaatt      2820
     tgggctacga agaagtaaaa ccagatacat tttttcgatc tgcaatagat gtatgattga      2880
     aggtatcaat gattacaagc tttaaacatc aatctcctat gtatttttga tagaatttgc      2940
     agacaatgaa acttaaacat gcacctttat tagcttcacg ctcactaatc tgtagaatca      3000
     ttttctgcct tggagctttg agtgtgtata tataacagaa tcatatcggg tgaatcctgc      3060
     agggacaatt gagcttcact acctgttagg tcttgcacca cacatggagc atctaactga      3120
     ggaaacagag ccaacaaaac aaaagttagg tcttgtatct tactagcaac aaaaacgttt      3180
     cagaaacgtt gaaaaagtta taagtccgtg ctctttggaa tgtattatat cattggcaac      3240
     caatttgttt gtttgtgaac attttcaatg attttggacc gcatttaatt ggagtcacat      3300
     gtggacgcag accgcattta accggtttga caaaatatgt gtttctttta acgatgacaa      3360
     accactactg aatcacagaa tcataagcct tgttttaatg gagaagaaag aatatcaagt      3420
     ccaagtgttt gccattcttt agtgccgaca tcaagtactt tagtatgtca ccaaggaatg      3480
     tactttagtt ttgtcaccac aaacttgatt gttcttttca tttgaaccat tgattattgt      3540
     accattcatt tgcaccattc actactcctt tatattgtat gaatgaatgt acaccgaata      3600
     aaaagaatcc gaacactact cctttattgt tctatatata atccgaacac tacttcaata      3660
     tttctatcaa ctctctttat cacaataata aacactcttt tctatcaaat catttttatc      3720
     tcttctctct ctttctataa ttttgctaaa atggcaggtt cttcttcaaa ctataatctc      3780
     gacgacatgt tcgatgataa gtttgatcaa tgctttgatc aagcattaga gagttatggt      3840
     aatcgccaac gagtcaagcc aaggaaaaaa aaagcatata tcgaaagaaa tcgtgaagaa      3900
     ggtcacatcc aattagtgaa cgactatttt acagagaatc caacatatcc tccccatata      3960
     ttccgacgcc ggtttagaat gaacaaaccg ttgttcatgc gtatcgttga gagattctcc      4020
     aatgaagtcc catactttaa acaaagaaga gatgccaccg gaagactcgg tttctcggca      4080
     ctacagaagt ctacagcagc aattcgtatg ctcgcatatg gtattgcggc tgatgcggtt      4140
     gatgaatacc tccgaattgg tgaaagcacg tcgctgttat gtttggaaca ttttgcagaa      4200
     ggaatcataa atctgttcgg ggatgagtat ctaagaagac ccacacgaga tgatcttata      4260
     cgacttctcc atattggaga gcaacgtgga tttcccggga tgataggaag catcgactgt      4320
     atgcattggg agtggaaaaa ttgtcccacc gcttggaaag gacaatatac acgtggatca      4380
     ggaaaaccaa caatcgtttt agaggccgtt gcttcacaag atctctggat atggcacgcg      4440
     ttttttggac ctccaggtac cttaaacgat atcaatgttc ttgaccgctc accagttttt      4500
     gatgatatat tacaaggtcg agctccgaaa gtgaaatacg tagtcaacgg gaaagactat      4560
     aatttggctt actacctcac agatggaatt tatcctaaat gggctacatt tatccaatca      4620
     atttcaattc cacaaggtga taaagcttct ttatttgcta caactcaaga agcttgtcgt      4680
     aaagatgttg agcgtgcttt cggagttttg caagctcggt ttgccattgt caaacatcca      4740
     gctctttttc atgataaggt gaaaattggc aatattatgc gagcatgtat aatacttcac      4800
     aatatgatag tagaggacga acgagatggg tacactcagt ttgatgtatc tgaattcgta      4860
     catccagaat cagctagctc ttcacaagtg gatttcacct atgctacaga tatgccttca      4920
     aatctcggta atatgatggc cactagagcc cgagttcgtg atcggattaa acatgaagaa      4980
     ttgaaagctg atttagttga acatgtatgg caacattatt accagaatca atcttaaaat      5040
     gtaatcgttt tttttttcgc ttttaaatat gtttttttgc ttcttctttc tatatcatg       5099
//
ID   TY3G        repbase; DNA   ; ATH   ; 7498 BP.
XX
AC   .
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   Ty3/gypsy LTR retrotransposon (a consensus).
XX
KW   Interspersed repeat; LTR; retrotransposon; gypsy; TY3; TY3G.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-7498
RA   Thomson G.K., Thomas E.J., Dietzgen G.R.;
RT   "Retrotransposon-like sequences integrated into the genome of
RT   pineapple, Ananas comosus.";
RL   Plant Mol. Biol 38(3), 461-465 (1998).
XX
RN   [2]
RP   1-7498
RA   Jurka J., Ma J.;
RT   "TY3G.";
RL   Direct Submission to Repbase Update (00-JAN-1999).
XX
CC   [2] (Consensus)
XX
CC   Present in diverse plant species.
XX
SQ   Sequence 7498 BP; 1718 A; 1191 C; 2442 G; 2133 T; 14 others;
     ggagcatata tggtgcagat tatgttcagg agaccacgga gaggatccgg gttcttaagc        60
     tgaacatgaa ggaagctcag gatcgacagc ggagttatgc tgacaagagg aggagagagc       120
     ttgagtttga ggttggggac agagtgtatc ttaagatggc catgttgcga ggtccgaaca       180
     ggtctatctc agagactaag ttgagtccga ggtacatggg tccgttcagg attgttgaga       240
     gggtgggacc agtggcatac aggttagagt tgcctgatgt tatgcgtgcg tttcacaagg       300
     tctttcatgt gtcgatgctg aggaagtgtc ttcacaagga tgatgaggtg ttggctaaga       360
     ttccagagga tcttcagccc aacatgactt tggaggcgag accagtgagg gttctcgaga       420
     ggaggatcaa ggaacttcgg cggaagaaga ttcctttgat caaagtcctg tgggactgcg       480
     atggtgtgac agaggagact tgggagccag aggcgaggat gaaggcaagg ttcaagaagt       540
     ggttcgagaa gcaggttgct gcatgagttt gcctttcctt ggtttccagt ttcagtgttg       600
     ttgagttttt gagcttttga gttgttgttc ttatttctct ttcatttgta ttttcgtttg       660
     gagttgtaac gatcatgaca gttgatgatt aataagatga gtattttttt cttggatttg       720
     acttgagttg tcttatttaa gaatgtgttg tgcggtttcc aaaaatggaa agtttcctag       780
     aaaggacttg tctatttttg gaaagtttga gtaaacaacc taagagaaag gtgtgtttac       840
     gagatggccg ggagttggtc ataaggatgt tctcgagggg atatgatgga tggtgaggca       900
     tagaggtgtc ttacgcgaat ccatgagaga gtctggagat atgctcggaa gcgtttagta       960
     ttgttgctcg agggacatga gggtcccaac gactcgtgag gagcggggta tgctcctgag      1020
     gtaccggtaa ctcgagggac atggtgtctt tagagtacga ggggtacggt ggcttcgggt      1080
     gacgatccga gagcacgctt tagggtgacg acccgagagc gagttttgtg gtattatttt      1140
     ctccaagtgt cgtaactcga tgactttgtg gctgagagtg agccgacaca actcagggtt      1200
     tgactttgag tggggaagat aatatgtgtg atacccgaga taccgtaggc cgaggcctga      1260
     gagtgacrgt ttatgctcga agattgcggt ctgagagtgg agagtgagtt gtgagcaaca      1320
     atgactagta aatcgtgagt atatygactg gatagagaga cctagagggg gtctggttgg      1380
     agggagtgca gactgtagtg atggttgcac ggagttcctc ggagtggaag ggtgaagcta      1440
     gattcgagga cgaatctatg ttagtggggg agaattgtaa cgcccgtgaa ccggaaaatc      1500
     ggttagggtt tgtttttaaa tcatccggtt taattggttg ggttaattgg aaaccctaga      1560
     gtgtgcctat aaaagaagga aactcgaaat tagggcttta gttagccact tttcgtttta      1620
     taaaggagaa aaagagagaa aaggagaagg agcagaatcg ttagggtttg ggagaaatca      1680
     gtttcgtcat atcaaatcgt ggtaaaaggt aacgaaattt ggtagagtta ttyccaagtc      1740
     ctttatcgtt attctccagt ttacagaatt ggatttggat taaaattggt tgagttattc      1800
     gcagtttcgt gagacacgtt ttctcagacg cgaattagga ccagcggaga ttgaaactga      1860
     gatcgtggtc tcgtctgttt tccgatcggc acgagatttt gtgggcagct ttgtgacgtc      1920
     tgcagctagg atttcaccgg agcgattgaa tagttaacgg ttagcttgta ttttagggtt      1980
     tcgtctttga gactgcttgt ttctggtttt tcctgtccag tttgcttcaa ggttgctttt      2040
     ggttgtggac ttgttgtagg acgtttctgg actgtttcag acgcaaggag agtctctcct      2100
     gggtttaatt gctattagaa tcaatttgtt aaggtgagtg cgtgaccatg agcttatctg      2160
     agcgattggg ttgtgtgatt tgttttgtgt gatgatatgt aggtgtggtg aatgtgtttt      2220
     gggtgaattg ttcaatgact ggtttgtttg tattgtattc gtgattatac ctttttattt      2280
     gcttgtgtgt atagctcgta gatgggagga tcgcctcact aagtatttat gataatactt      2340
     acgcatctca ttgtgttgtt gatgcaggta aagataaagt gtgatcgtgg aatcatggca      2400
     aggaagagag gatgatctag gaactcgttt gttttatttt tggtgttttt ggttattgga      2460
     acccggttag gattgtcagt tattcttggt tttgttggtc gaattattta tttattcata      2520
     aaatagtatt tttgacttgc ggtttaatta ttatgttatt ggttggttta attagatatt      2580
     tatgggaata tttaattata ttttttttat aaaaaaatgg gtcgggttgt ttcaatttgg      2640
     tatcagagcg attacggttc taggatgtgt agaaaaatta attgatgaat tattttcctg      2700
     atgattgatg tgggatgagc tagggtgtta gcatattgag gattgattat ggagtgttta      2760
     gtcaattgtg tgttgttgga gtcctagcat catcttctcc gagccttaaa tgagattcca      2820
     cggtaagttg tttgtgatat attcgtttgt tttagtttct tagccatttg ttcttgagta      2880
     gcgcagatgg ttagaggagc tggagttcgt ggtcgtggtc gtggtcgtgg tcgcggtagg      2940
     ggacgagtcc tcgagggtac cggcgagagt gatggccaca gtgccacagt tgagcagagt      3000
     gtgggttcgc agcctgagtt tgtggagccc ggggttagga acggtcttgg tgccgatata      3060
     gctggtgcag ccggagtggg ggctggtgga gctggtgtcg gtaccggtgt gcatgccgtt      3120
     ggtgctgagg gcccaggagt gatgggtgcc gcagccggag gagcccaggt tccagaggtt      3180
     ggtttggcgg gcctgttgag gcagttgttg gagcggttac caggtgtggt accagtgcag      3240
     gctccagttg cgccacgagt ggcggaggtg cagcagaggg ctgcggttgc tgaggaggtt      3300
     ccatcttatt tgaggatgat ggagcagttg cagaggattg gcaccgggta tttttctggt      3360
     ggtactagtc ctgaggaggc cgacagttgg aggtcgcggg ttgagcggaa cttcggttcg      3420
     agcagatgcc cggcggagta tcgggtggat ctagcagtgc attttctaga gggggatgca      3480
     catttgtggt ggcggagtgt gactgccagg aggaggcagg cggatatgtc ttgggcagat      3540
     ttcgtggctg agtttaatgc caagtacttt ccgcaggagg cgctcgaccg tatggaggcg      3600
     cgttttcttg agctgacaca gggtgagcgg tcggttcggg agtatgaccg ggagtttaac      3660
     cgactcttgg tgtatgcggg tcggggcatg gaggatgacc aggcccagat gaggaggttc      3720
     ttgaggggac ttcgaccgga tttgagggtg cggtgtagag tgtcgcagta cgccacgaag      3780
     gcggcactgg tggagacggc tgctgaggta gaggaggacc ttcagaggca ggtggtggga      3840
     gtgagtccag cggtacaacc gaagaagact cagcagcagg tggcacctag caagggcggc      3900
     aagcctgcgc aggggcagaa gaggaagtgg gatcatcctt ccagagctgg acagggtggt      3960
     cgtgcaggat gtttttcttg tgggagcctt gaccacaagg tggcggattg cacgcagcga      4020
     gctgagacga gggagtgcta ccactgtagg gagaggggac atctcaggcc gaattgtcct      4080
     aagctgcagc ggatggcagt ggcagtggta cagccggcgg tgcagcacgg agcgcaggtg      4140
     cagcagggag tgcagcagtt agcacatatt gcagcrgcac cgcagggtta cactacgcgt      4200
     gagataggcg gtaccagcaa cagagcgatt actggtatga tttctgagac tcagactttg      4260
     tgaattattt ctgttgtttt ggatatcatt gttttgtgat gaatgttagg gttcttagca      4320
     catgaggttt gtgtagggac cttattagtg ggcggtgtag aggcccatgt gttgtttgac      4380
     tctggagcat cgcattgctt cattaccccg gagagtgcct cgcgcggcaa catccgtggg      4440
     gatcctggtg agcagcttgg agccgtcaag gttgctggag ggcagtttct agcggttctg      4500
     gggagagcga agggtgtgga tattcagatt gcaggggagt caatgccagc agatttgatt      4560
     atcagccctg tagagttgta tgatgttatt ctgggaatgg attggttgga tcattacaga      4620
     gtacatcttg actgccaccg tgggagagtt tcttttgagc ggccagaggg aaggttggtt      4680
     tatcagggag tgagacctac ctcagggagt ctcgtcatct cagcagtgca ggcagagaaa      4740
     atgatcgaga agggctgcga ggcttacctg gtgacgatat ctatgccgga gtctgtgggg      4800
     caggtagcag tgagcgacat tcgggttgtt caggagttcg aggatgtgtt tcaatcgttg      4860
     cagggattac caccatcacg gtctgatcct ttcacgattg agttggaacc agggacagcg      4920
     ccgttgtcta aggcacccta taggatggct ccagcagaga tggcagagct aaagaagcag      4980
     ctagaggatt tgttggataa gggattcatt cgtcctagta cttcaccttg gggagcgcca      5040
     gtgttatttg tgaagaagaa ggatgggagt ttccgcttat gtattgatta tcgggagttg      5100
     aacaaggtca ctgtgaagaa caagtaccct ttgccaagga tcgatgagtt gttggatcag      5160
     ytgaggggtg ctacttgttt ctccaaaatt gatttgaggt cgggttatca tcagatgaaa      5220
     ataagggcag cagatgtacc aaagactgct tttcggacca ggtatggaca ttatgagttt      5280
     gtggtgatgc ctttcgggtt gactaatgcc cctgctgcgt tcatgagttt gatgaatggg      5340
     gtttttaagc catatytgga tcagtttgtg atcgtattta ttgatgatat actgatttac      5400
     tctaagagta aggaggaaca tgaggagcat ttgagaattg tattggaaat gttgagggag      5460
     aaraagtttt atgccaagtt ctctaagtgt gagttttggc taaatgaagt gkccttcttg      5520
     gggcatgtgg tttctgcaga gggaatttca gtggatccag agaagattga ggctatcaga      5580
     gattggccta gaccgacgaa tgtcactgag atcaggagtt ttcttggayt ggcagggtat      5640
     tacaggaggt tcgtcaaggg ttttgcgagt atggcaaaac cgatgactaa gctgacaggg      5700
     aaggatgttc cttttgtgtg gtcaccggag tgcgaggagg gtttcgtgag cctgaaggag      5760
     atgttgacta ctgcaccagt gttagcattg ccagagcatg gagagcctta yatggtgtat      5820
     actgatgcct cgggagttgg tttgggttgt gttctgatgc aggatggraa ggttattgcy      5880
     tatgcatcac ggcagttgag gaagcatgag gacaactatc ctactcacga tttggagatg      5940
     gctgcggtaa tctttgcctt gaagatttgg aggtcttatc tttatggcgg gaaagtgcaa      6000
     gtgttcacgg atcataagag tttgaagtat atcttcactc agccagagct gaacctgagg      6060
     cagaggcgat ggatggagtt ggtggctgat tatgatctgg agatagctta ccatcctggt      6120
     aaggctaatg tggttgcaga cgcgttgagc cgtaagcgcg tgggcgcggc tccagggcag      6180
     agtgttgagg ccttggtgag tgagattggt gctttgcggt tgtgtgctgt ggcacgagag      6240
     ccattgggat tggaagctgt ggatcgagca gatcttctga ctagagttcg gttggctcag      6300
     gagaaggatg aggggttgat tgcggcttct aaggcagagg gctctgagta tcagtttgca      6360
     gctaatggga ctatccttgt gcatgggcga gtttgtgtgc ctaaggatga ggagttgcga      6420
     cgggagatct tgagtgaggc tcatgcgagc atgttttcca ttcatccagg agcgactaag      6480
     atgtaccgag acctcaagcg gtactatcag tgggtcggga tgaagaggga tgtagctaat      6540
     tgggttgcag agtgcgatgt ttgccagtta gttaaggctg agcatcaggt gccaggtggc      6600
     atgttgcaga gtttaccyat tcctgagtgg aagtgggatt ttatcacgat ggattttgtg      6660
     gttgggttgc ctgtgtcgcg aaccaaagat gctatttggg tgatcgtgga ccgtctgact      6720
     aagtcagcac attttctggc catcagaaaa accgatggag cggcggtgtt ggctaagaaa      6780
     tatgtgagcg agatcgtgaa gttgcatgga gtacctgtga gtattgtgtc agacagggat      6840
     tccaagttta cttctgcatt ttggagagcc tttcaggcag agatgggtac taaggtgcag      6900
     atgagcacgg cttatcatcc acagacagat gggcaatctg agaggactat tcagacgctt      6960
     gaggatatgt tgcggatgtg tgtcttggat tggggaggtc attgggcgga tcacttgagt      7020
     ctggtagagt ttgcttataa caatagctat caggcgagta ttgggatggc tccttttgag      7080
     gcgttgtayg ggaggccatg caggacaccg ttatgctgga cccaagtggg ggagaggagc      7140
     atatatggtg cagattatgt tcaggagacc acggagagga tccgggttct taagctgaac      7200
     atgaaggaag ctcaggatcg acagcggagt tatgctgaca agaggaggag agagcttgag      7260
     tttgaggttg gggacagagt gtatcttaag atggccatgt tgcgaggtcc gaacaggtct      7320
     atctcagaga ctaagttgag tccgaggtac atgggtccgt tcaggattgt tgagagggtg      7380
     ggaccagtgg catacaggtt agagttgcct gatgttatgc gtgcgtttca caaggtcttt      7440
     catgtgtcga tgctgaggaa gtgtcttcac aaggatgatg aggtgttggc taagattc        7498
//
ID   ATGP2NLTR1  repbase; DNA   ; ATH   ; 2033 BP.
XX
AC   .
XX
DT   06-MAR-2000 (Rel. 4.1, Created)
DT   06-MAR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   Long terminal repeat from nonautonomous ATGP2N gypsy-like LTR
DE   retrotransposon - a consensus sequence.
XX
KW   GYPSY superfamily; LTR-retrotransposon; ATGP2NLTR1; ATGP2NI.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2033
RA   Kapitonov V.V., Jurka J.;
RT   "ATGP2NLTR1.";
RL   Direct Submission to Repbase Update (00-MAR-2000).
XX
CC   [1] (Consensus)
XX
CC   There are more than 30 copies of ATGP2NLTR1 in the genome;
CC   they are ~97% identical to the consensus sequence.
CC   Solo LTRs are flanked by 5 bp target site duplications.
CC   ATGP2NLTR1 shares homologous fragments with ATGP2LTR1.
XX
SQ   Sequence 2033 BP; 585 A; 430 C; 608 G; 408 T; 2 others;
     tgtaacgacc gcgtcccgcg ttcataaaga ggccaggttg ttttaggaga aaactagacc        60
     atggtcaaga aacggactaa aatacttagt cggaagaacg agaaagttca agctgaacca       120
     gctaggtgag ctggacaagc taggatgaac tagctagcta agctaggtga gctaaaccag       180
     ctggaagact agctagctca gctaggtgag ctgaccgaca gctcgactga gctcggtgag       240
     ctgatcgwgt actgacccag ctgggtggtc cggtcagctg acactcgagc tggtggactg       300
     tggtagctca cgggtgaaga ggtgtctcgg ccaaaaggtg taaggtcgag cgggtaccaa       360
     cgaacggttg catcgcccaa aggatgcaag gaacggatgt gacctttcgg aaggatgcaa       420
     ggaacggatg tgacctttcg gaagggtgca aggaacggat gtgatgcttc gggaagcatc       480
     cattcgcccc ctatataagg gaggacgccc aaggcctttg gaataatctc acatcatctc       540
     acaacatcca aaacaccata aaacattctt aaaggagtcc caacacatcc tagagttgtt       600
     ggtcggaaag ggggtgcggc tcggcgagta taactcgacc gaactgatgc gcatgctacc       660
     tcccggtcca acggttcgat ggagtgtaga ggatggagag ggtagaccgt tcgtcttaga       720
     gacgaatcgg atctggtaga ccgatcgttg gatcggatcg gccagaccga tcgtcagacg       780
     gatcggatcg gccagacgga tcggacagac cgatcgtcgg acgggtcgga tgggacaggc       840
     cgatcgtctg acggaacggg tcggacagac cgatcgtcgg atgggatgga tcgagaaaag       900
     tgttcgagga agcacaagga taagtgcatc cgaacacacc caagggtcgc ccatggatgc       960
     aatcttaccg gtaaagggag aaagcaccaa gaatgggtaa ggaacgtgat tcaccatata      1020
     ggatcaacat cgcggccgcc ttcatgtatc tatctcctca gccatggtga aaccgatcag      1080
     agatcggtaa gaccaaaggg tgactcgacg gataaccaac gggaaagtcc acggtgggaa      1140
     ccgatggaca aaacggatgt tggacccgcg agcaaaccta aggccgacgg aagaargatt      1200
     tcatgggcta gcctacgatg atccagtgga tgaatccacg gacccttggg tgtgataagg      1260
     atatcgttcg gaccgcatgg atggatcatt aagccgaaag ctttatcgac caccatggac      1320
     cggacgggta aacggttagt aaaccgtggg cggtcgtagt gttaaacgac cggatcggaa      1380
     acatggatgg ttcgataagc cgagggctca atcgtccacc atgtagccgg aggggcgtac      1440
     gtttggagaa cggatggacc aataagccaa gagcttgatt cggccatcgt gaaccaaggg      1500
     aatcgtacga tccccaatct ctatcgttgt acttagacca gtggggttgg ttggttgtat      1560
     ggctaagtaa cgatagggat tggttcatca attcacgacc gatgacgagt cgttgaacga      1620
     atggagtaag gcgacaaacg ggctaaggaa tcaaatccgc atattggcca aggtatgtaa      1680
     cgatctagct tattagttaa gatagacgtt tggtaattga ccgtgaaagt aggataaagg      1740
     aatatgcgat tgtttggctt agaatggtta gcgaacaata tgcatgtctt gaccgagtaa      1800
     aggatcgatc taagtctaag ggacaaagac gatgaaaccg gtacaagagt tggttagaat      1860
     taaaccaagg ttagaaagac ttccgctgtg taataagaga gcgattatag aatttagcct      1920
     cgtaaaggca attctatgtt gaatcgcgaa aaattaagag gttcggccgg gaagaggcgc      1980
     gaacttgagt acaacgtcgc cggacgccga gacgtccggg acggggtctc aca             2033
//
ID   TAT1_ATH    repbase; DNA   ; ATH   ; 723 BP.
XX
AC   M55144;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   A.thaliana Tat1 isolate transposon-like element DNA.
XX
KW   S-adenosylmethionine synthetase; transposon-like element; ATHTAT1;
KW   TAT1_ATH.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-723
RA   Peleman J., Cottyn B., Van Camp W., Van Montagu M.M., Inze D.;
RT   "Transient occurrence of extrachromosomal DNA of an Arabidopsis
RT   thaliana transposon-like element, Tat1.";
RL   Proc. Natl. Acad. Sci. U.S.A 88, 3618-3622 (1991).
XX
DR   GenBank; M55144; Positions       1     723.
XX
SQ   Sequence 723 BP; 227 A; 155 C; 127 G; 214 T; 0 others;
     ctgcagtaac agagtatttt cttccttttc aagtcccaag aggtcaaaac agagtatcat        60
     cgttgtggat gtcggattcg gtccacttcg gactaatccg cattcaatgg gcttcaaggt       120
     gaattgggcc caattcacag cccagcgtga gcctggccgt ttaaagaata atccgacatt       180
     aatacagaaa cggaaggatc acgacttaaa ccacgcatta aagtcccgag ttgaagattc       240
     gtaacgtacg acgttaataa cgcgagatcc acagcgtgaa gtcggcaagt attttaatac       300
     gtttgattcg atgtattgag tataaatatg agtcgatgac atttgtaaag gggacggtta       360
     agaatacact aatactatac acaaaattaa aagacgcttt cttcttggtt cgattcgatt       420
     attgttcgtt taacaagacc aaagatcccc gtaaaaacaa ccacaagatt ctaattgcgg       480
     attccgacat ccacaatcgt catctatcat ttttatgatt cttctataca ttttatacta       540
     aaattcaaaa agaaaaacta accatgtaca tctctgcaat ttcatatcta gtaccagaca       600
     agagttaggg aaatgtgatc tttggcaaat tgtcatgatc cgcttgatgg cacttcttca       660
     agattctcga actctcttac gatctgcttt atatcatcct cactaatcct cccactttct       720
     cta                                                                     723
//
ID   ATREP       repbase; DNA   ; ATH   ; 3299 BP.
XX
AC   L12220;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   Arabidopsis thaliana DNA sequence, complete transposon.
XX
KW   endogenous transposon; ATREP.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-3299
RA   Tsay F.Y., Frank J.M., Page T., Dean C., Crawford M.N.;
RT   "Identification of a mobile endogenous transposon in arabidopsis
RT   thaliana.";
RL   Science 260, 342-344 (1993).
XX
DR   GenBank; L12220; Positions       1    3299.
XX
SQ   Sequence 3299 BP; 1024 A; 530 C; 666 G; 1079 T; 0 others;
     caatgttttc acgcccgacc cgaaccgccc ggtccaaccg gttaaaccac gacccgagca        60
     cttctccggt ttgggtttag tgctaaaacc cactatctat aaaaccaaaa aaacccataa       120
     aaacccgcta ttaacccacg acccattgaa ccggttgaac cgactgggtg tgggttttaa       180
     aaactatagt tgattttgga acgaatatag ggtttttgga acgaatatag ggctttttca       240
     tagttcataa tttcttctca aacggcgact caatctctcg tctacactag ccaaacaaac       300
     cagttagttt ttctatctct cgttttaagt ttgaaaatcc tatttgtctt tatttgtgag       360
     catcatgatc attttatatt gtatattgat atagtgattt ctatactctc gtggcctctt       420
     tgtcttggct ccactgaatc aaatataata ttcaaagtgt ttttgcatca aaataataat       480
     tcagcttcat gtttgatgtg catgtctcac agatatttgt ttgttttttt gtgtgaattt       540
     aataggtaat ggaaacagaa cacgatgaaa attatgaaga tatagctgct gcaaaccgtt       600
     caatccgagg aaaaagtgat attgcttggt cctatgtaat tcaatcaaaa gacgaaaaag       660
     gaaaaacggt tttggaatgt gcattttgtc ataaaaaaaa aagaggaggt ggaattaata       720
     ggatgaaaca ccatcttgct ggcgtgaaag ggaatacaga tgcatgtttg aagatttctg       780
     cagatattag atttaagata gtgaacgcat tgaaagaagc tgagaacaag aagaagcaaa       840
     atattgtttt ggatgatacg aacttagacg gtccagaaat tgaagatgtt gatggagatg       900
     atatccgagt tgatgttcgg ccaagtcaaa agaggaagaa acaaggtatt gatctacatg       960
     attattttaa aagaggtgtg catgatcaga cccaaccttc tataaaagca tgcatgcaaa      1020
     gcaaagagag gaatacatgc tgtggacatg tctgttgcat tgtggtttta tgacgcttgt      1080
     attccgatga atgcggtgaa ttctccactt ttcagcctat gatgagtatg gtagcaagta      1140
     tgggacatgg atatgtgggt ccttcatacc atgctctgcg tgttggattg ttgcgtgatg      1200
     ctaagttgca agtttctttg atcattgata agtttaaaag tagttgggct agtactggat      1260
     gtactcttat ggcagatgga tggaaggaca caagacaaag accactgatt aacttcttag      1320
     tttattgtcc caagggaatt acatttctta agtcagttga tgcttcagat atctatgcaa      1380
     gtgctgagaa tttatgcaac ttgtttgctg aacttgtggg aataattggt tcagaaaata      1440
     ttgttcattt tgtgactgat agtgcaccca actacaaagc tgctggaaag cttcttgttg      1500
     aaaagtttcc caccattgct tggtctcctt gttcagctca ctgtatcaat cttattttgg      1560
     aagatgtggc aaaactaccg catgttcacc atatagtgcg ccgtatgtct aaggtaacca      1620
     tttttgtttt acaaccataa gccggcttta aattgggtga gaaaaagatc gggttggaga      1680
     gagatcattc gtcctggaga aacacgtttt gctacaactt tctcatagct ctacaaagtc      1740
     tctatcaaca taaagaagat ctacaagctt tggttacaag tgcagatccc gaactcaagc      1800
     agcttttcaa aacatctaaa gcaaaagtag ctaaatcggt tatcttggat gagcgaatgt      1860
     ggaatgactg cttgataatt gtcaaggtta tgactcctat catccgtttg ttacgtattt      1920
     gtgatgctga tgagaagcct tctttgccat atgtgtatga agggatgtac cgagcaagat      1980
     taggaattaa aaatattttc caagaaaaag aaaccctcta caagccctat acaaacatca      2040
     ttgatagaag atgggatcgt atgttgcgcc acgatcttca tgctgcagcg tactatttaa      2100
     acccggcttt catgtatgat caacctacat tttgtgagaa gcctgaggtt atgagtgggt      2160
     tgatgaactt atttgagaag caaaaaaatg acagcaaaac aaaacttttt caagaactta      2220
     gggtgtatag agaacgtgaa ggaagttttt ctcttgatat ggctttaact tgcagcaaaa      2280
     cctctcagcc aggtaaatta ttaaacttga gttaaacttg cattttatta tctatatata      2340
     taatataatt ttatttctat ttagatgaat ggtggagata ttttggtcat gacgctccta      2400
     atttgcaaaa gatggcaata cgaattctta gtcaaaccgc ttcttcatct ggatgtgagc      2460
     gcaattggtg tgtatttgag cggattcata ccaagaagcg gaatagacta gagcatcaac      2520
     gacttaacga tctcgtcttt gttcactaca atttacgttt gcaacatagg tgattatcat      2580
     tattattttt tgtttcttaa tttagcttag tttataacaa gttccatgtt tttaatgtac      2640
     aggtcaaaaa gaaaaagatc atatgatcct gttgactacg aatctattga taagacagag      2700
     ttttgggtcg ttgaagaaga agaagcaggt gagcttgaat atgatgaatt agagaatgct      2760
     cttgctgagg aatatcccaa agatcttgaa gacacaaatc ctgaaacatc gaatggtatc      2820
     ttaaattatt gattaaactt ttcgaattga cttttagtta tagataatat gttgactaac      2880
     taaacgatat gtctttgatg ttttagattt tgatgaagac ttcacattgc cgcctgaaga      2940
     ggatgtatgg aatgatgagg aagacaatcg agattagttg ttttgaattt gcgatgtttt      3000
     attactttat ttctgttatt gacttattgg tgatctacta gacatattgt tattttagta      3060
     ttttaaaggt tttatggatt taaatttttt aaactttatg tattgttata cttcttattg      3120
     ttattaaaca tggtattatt attattttta tatataagtt atataacata aactatataa      3180
     tctctatata tatcaaatgc attaaatcag ttgacccgtg gtctaacccg gttgacccaa      3240
     tgacccggtg acccagaagg tagtccggtt cactgtccgg gtcgggcgtg aaaacattg       3299
//
ID   ATREP13     repbase; DNA   ; ATH   ; 648 BP.
XX
AC   .
XX
DT   29-JAN-2001 (Rel. 6, Created)
DT   29-JAN-2001 (Rel. 6, Last updated, Version 1)
XX
DE   ATREP13 repeat - a consensus.
XX
KW   ATREP superfamily; ATREP13.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-648
RA   Kapitonov V.V., Jurka J.;
RT   "ATREP13.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
CC   [1] (Consensus)
XX
CC   There are ~20 copies of ATREP13 in the genome.
CC   ATREP13 copies are 95% identical to the consensus sequence.
CC   ATREP13 shares common structural features with elements from ATREP
CC   superfamily: it has conservative termini 5'-TC and CTAG-3', and
CC   is inserted into the AT target sites, without duplications.
XX
SQ   Sequence 648 BP; 230 A; 81 C; 84 G; 253 T; 0 others;
     tcatatatat gaaagttggc caactctctc catatgattg acacatcatc actttagcat        60
     ttgccatgtg tctattaaat aattaatgta agctcttcaa cttctaattt ataggttaat       120
     gatatattta ttatttaatt ttacatatta ttttatttta catatttaat tgtactatta       180
     ctaaatttat tttaatatta catgattttt caataaaacc attttaatag ttttctcata       240
     ctcgaagatt tttttttgta atccaaactc aaagtatgag tgtataatag tcgtggatta       300
     cttaatgatt tgagtaagtt attctcttaa attgatattt atattctctt aaattgatat       360
     ttatataata aatcactgag ggtgaagaat acgtaaggag ctccatcatc aaattcttag       420
     gtttctagaa tccaacacta ccctctgtta aattggttta agacaaacgt tgtttatgaa       480
     ttatgtgtat gatgcattgt tgagaatgtt gttagaaaaa aatattttta atactaaaag       540
     taattgctta ttgcatgagt gaatgattag ataaataaaa attatattta aattaaacaa       600
     tacaaaaaaa tccaaaaaaa ccgcggcgta gcgcgggtga tcacctag                    648
//
ID   ATREP5      repbase; DNA   ; ATH   ; 2388 BP.
XX
AC   .
XX
DT   24-FEB-1999 (Rel. 3.2, Created)
DT   05-MAY-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   An AT-rich repetitive sequence - a consensus.
XX
KW   ATREP superfamily; Dispersed repeat;
KW   putative nonautonomous DNA transposon; ATR3; ATREP5.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2388
RA   Kapitonov V., Jurka J.;
RT   "ATREP5.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   Individual copies of ATREP5 are ~97% identical to the ATREP5 consensus
CC   sequence. The nature of the repeat is unknown. Target sites are not
CC   well determined since ATREP5 copies are flanked by (AT)-rich
CC   sequences.
CC   An existence of several ATREP5 subfamilies determined by multiple
CC   diagnostic positions indicates that ATREP5 can be a retroelement.
CC   At the same time, multiple copies of ATREP5 have internal deletions
CC   typical for DNA transposons.
CC   ATREP5 shares common structural features with other ATREPn elements
CC   wich belong to ATREP superfamily;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
SQ   Sequence 2388 BP; 953 A; 251 C; 334 G; 849 T; 1 others;
     atctatatat acatttttgg aggggatttt tgaagataat gttgaagatt tgagccataa        60
     ttcaacaatt aattcaaatg ggtgggtttt acccggttta actctgttcg gatcctggat       120
     aacatgttta attctgttct gatcttggat aacattaatt tttggaaaag ttacctaaaa       180
     actaataatt aaaaacgaaa attaatgatt taattaccaa atttaatata aacaatatct       240
     ctaaactaac catatttctt atttacctta actaatttcc taaaatattt ctacctaatt       300
     taaacataaa tatataattc ttctttcayt tttatttgat cttatacttt atttattttg       360
     aatttatata aaatatatat agttaataaa atattatatt tttttctgaa tatgatgtaa       420
     ttcaaatttt ttaaaacgga catatattat tcaacctatg aagaaataat atgtgtacaa       480
     tgtcccacat cgcttagaaa aattggacaa tggttcagac ccatattata aaaggaccaa       540
     aatgattctg attacgaatg agcaggaagc ttgatttatc aggcgtccaa aattaaaata       600
     gttatccgat tttactcgga ttttttattt taaagaattg aaactttaaa atgtttcaag       660
     aaattataaa tattataact ttatcaaaag ttaaatatta taattttaaa aactttttat       720
     aaagtttatc tttaaaaaat gctttaaata tttataattt taaaacttat aaagttttaa       780
     aaattataaa ttgaatttta caagaaattt aaacattata aatatataaa aaatatatta       840
     atacgagacg atatattaca ggaaaaatct taaatataac aatcaaaatt caatgatgaa       900
     ttttgggtcg atattgtatt ttttttaagt ttcaaatttt ataatattga aatttataag       960
     aaaatgacaa aattatgttt aatttcacgg gactgggtta tatggtagga cgggtttggg      1020
     tggataataa ttacgatttt acaatgtccc acatcgctta aaaaaattgg acaatggtca      1080
     agagccatac tataaaaagg accaaaatga tttcgattac gaatgagcat gaaacttgat      1140
     ttatgaggtg tccaaaatta aaatggtttg tttactaggg ttatttattt taaaaaattg      1200
     aaactttaaa aagtttcaaa aaattataaa ttaaatttta caagaaattt aaacaatata      1260
     aaagatatta atacgggacg atatactgcg agagaaatct tagatataac actcaaaatt      1320
     caatgatgaa gtttgggtca atattaatct tttttgaagt ttctaatttt ataaatattt      1380
     gaaatttata ataaaatgac aaatttgtgt ttaatttcac gggacggggt tatatggtgt      1440
     gacgggtttg agtggataat aacatgggat agtatgctat ggaaaaaaac atataattaa      1500
     caatcataat ataattatat aatcttaaac actaaacaaa attaacaata ttaaaaaaaa      1560
     acacttaaaa ctttaatttt tttaaaacac attttgattc ttttataaga aatttaaaca      1620
     ttataaatat ttaaacttta tactacgggt gaaattttag aattgactgt ttgggttgat      1680
     aagaatttgc gatagaacta ggagttaaat cctagaatga caatcaaaat ataattatac      1740
     aattaaatac taccacgagt gaaatcctag aattgacgag tttgaatcga tattaatatg      1800
     ggatggtgta ctacgggtga tattttagaa ttgactggtt tgggttgata ataatttgcg      1860
     atagaattag gagtgaaatc ctagaatgac aattaaaata taattataca attaaatact      1920
     accacgggtg aaatcctaga attgacgggc ttgattcgat attaatatgg gatggtgtac      1980
     tacgggtgat attttagaat tgactggttt gggttgataa taatttgcga tagaattagg      2040
     agtgaaatcc tagaatgaca attaaaatat aattatacaa ttaaatacta ccacgggtga      2100
     aatcctagaa ttgacgggtt tgattcgata ttaatatggg atggtgtact acgggtgaaa      2160
     tccgagaaac aacaatcaaa atacaattat acaatattaa acatttaaca aaataaacaa      2220
     atacaactta aaactttaaa atttgagtta taaaatttcg tctcgcggtg aattatacat      2280
     ttaaatcaaa caatagcata aatttattaa atcatcctaa aaaatattca attatttttt      2340
     atttaataaa aatataggcc cgcggtatac cgcgggttaa tatctagt                   2388
//
ID   ATREP6      repbase; DNA   ; ATH   ; 1193 BP.
XX
AC   .
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATREP6 repeat - a consensus.
XX
KW   non-classified repeat; ATREP superfamily; ATREP6.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1193
RA   Kapitonov V., Jurka J.;
RT   "ATREP6.";
RL   Direct Submission to Repbase Update (00-APR-1999).
XX
CC   [1] (Consensus)
XX
CC   ATREP6 individual copies are 92% identical to the consensus sequence.
CC   Multiple diagnostic positions indicate the existence of several ATREP6
CC   subfamilies.
CC   ATREP6 shares common structural features with elements from ATREP
CC   superfamily;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
SQ   Sequence 1193 BP; 452 A; 150 C; 110 G; 439 T; 42 others;
     aatcatatat atgaaagttg gycaactctc tccatataaa tgacacatca tcacacaaca        60
     aaatgacatr tgtcattyka trttttttaa attaataaaa ytaataaaat taaataagca       120
     aattaaatat atcatcaatc ctactcttaa ttgatttcty caaaataaaa ataaaaaawa       180
     aaattatgtw aayaaattaa gyactacttt cattatactc tttttatttt actawttttt       240
     tttatcaata atcatgacta anttttttat tgtgttgtag ttgtttgcta cctaacctct       300
     tattagttta gtaatttwat tttgagtctt tgataacatt gacattcaag ttttttcaaa       360
     taataaacct tyaaaayatt agacctacca aataatktaa tacacgatca tttctcttat       420
     atkgatatat gcaatgasag aagatctaaa agtattgact twaatgatac tttaattttt       480
     gctttctttt tattcttttc atatgaatac tcttgaaatc ttgttcagtt tatatcaatt       540
     ctatatattt aatcatgagc ctataacaht gttgttggag tattatatcw ggagaatama       600
     taaaaccaga aatagtttat ttataatcaa gttrracaat tttcaaatca tccaagacay       660
     gatcatttct ctaatattga tatatgcaat gacaraagat ctaaaagtgt tgacttmaat       720
     gacattcaat ttttgytatc tttttatttt ttyrtacgaa tactyttcag atctttttca       780
     gttgatgtca atccaaactt taatcatgag cctatcacaa tgttgttgaa gtacataaaa       840
     caaggaattg atttatttat aatcgagtta ggmaaatttt aaaccacama agtaacatag       900
     ttacacakaa ttgtatcara atatcatata ttgttgttat atgtattcat gaagtgaaaa       960
     aatattaaaa tcttataaat aatcagcttt atacayaaaa tatataaatt gatatttcga      1020
     gtcacaaatg aatctaacca taaaattrta actacatatt atggatctaa ttttattaac      1080
     aatacaagaa taaacaaaka rtaaatataa attagcataa agaacaatca atgtaawttt      1140
     tttttaacaa ttttcaaaay aaacccacgc gtagcgtggg tactcatcta gta             1193
//
ID   ATREP2      repbase; DNA   ; ATH   ; 566 BP.
XX
AC   .
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   16-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATREP2 repeat - a consensus.
XX
KW   non-classified repeat; ATREP2.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-566
RA   Kapitonov V., Jurka J.;
RT   "ATREP2.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   ATREP2's individual copies are 94% identical to the consensus
CC   sequence.
CC   Multiple diagnostic positions indicate the existence of several ATREP2
CC   subfamilies.
CC   It is possible that ATREP2 has been preferentially inserted at ACTAGAT
CC   target-site forming 5 bp-long duplications. ATREP2 and ATREP1 share
CC   almost identical terminal portions (236 bp-long 5'-terminus and
CC   70 bp-long 3'-ternimus).
XX
SQ   Sequence 566 BP; 202 A; 67 C; 79 G; 216 T; 2 others;
     actagatttt aacccgcggt ataccgcgga aacaatttat tttttaaagt tagtatatat        60
     aaaagtttgc aaattgtatc tatctataaa atatttttat tttatagttt acaattgtta       120
     ttaagtaacg tcctgccaaa cccgtcccgc caacccgtcc cgtaaaaaaa actcatttat       180
     tttattaatg ttgatcttat ttatgatatg tttatgaaty attgtctaaa tattttgtaa       240
     ttttgtagta attaaatgct atcaaatatc tctgcggttt gatgattata atcgaattgt       300
     tatagtcatg gagaaaarca atatcaaaaa tgataatttt gtagtaatta aatgatatta       360
     aatattttgg aagttttatt ttagtaacta atcgtgtagt taatgtggag agattttggg       420
     aagattgtta aatgtcaaat atttaattcg aagattttct ttctaattat caaaaacaaa       480
     tattaaaatc cagtggcagc cattgtaaat aagtcccaac tacaggattt atttcacaaa       540
     atggctgcaa aaatgtatat atagat                                            566
//
ID   HELITRON1   repbase; DNA   ; ATH   ; 15809 BP.
XX
AC   .
XX
DT   31-MAY-2000 (Rel. 5.04, Created)
DT   24-MAY-2001 (Rel. 6.04, Last updated, Version 2)
XX
DE   HELITRON1 is a DNA transposon, a consensus sequence.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; ATREP; helicase;
KW   HELITRON1; replication protein A; HELITRON class.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-15809
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON1.";
RL   Direct Submission to Repbase Update (00-MAY-2000).
XX
RN   [2]
RP   1-15809
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (00-MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [2] (Consensus)
XX
CC   HELITRON1 is a DNA transposon.
CC   It encodes a DNA helicase-like 1697-aa protein, ATHEL2p.
CC   HELITRON1 encodes also proteins ATRPA1H1p and ATRPA1H3p
CC   similar to the replication protein A.
CC   There are several copies of HELITRON1 in the
CC   genome; they are ~98% identical to the consensus sequence.
CC   Approximately 2% of the A. thaliana genome belongs to molecular
CC   fossils of non-autonomous elements transposed recently (<10 Myrs)
CC   by autonomous HELITRON1-like elements. ATREP1-ATREP12 are families
CC   of non-autonomous elements transposed by HELITRON1-like DNA
CC   transposons. All these elements share the same 5'-TC and
CC   CTAG-3' termini, the AT target site, and they do not generate
CC   duplications of the target sites upon insertion into the genome.
CC   There are several other families of HELITRON1-like transposons
CC   in the A.thaliana genome that are only 60-70% identical to the
CC   HELITRON1 consensus sequence.
XX
FT   CDS           0..0
FT                 /product="ATRPA1H1p"
FT                 /translation="MAATFAYLKDVRPYKNAWRVQVKILHSWKQYTSNTR
FT                 ETIELVISDEYGKKMHATVKKELVSKFVHKLIVGEWVFIEIFGLTYASGQ
FT                 FRPTNHLYKMAFQVRTEVMGCASVSDSNFLTLAPFSKIQSGELNPHMLVD
FT                 AIGQIITVGELEELEANNKPTTKIDFEIRDQMDERMQVTLWGTYAQQVYR
FT                 ACQESEGKNVIFLIRFAKIKSYKGIFSFFVPIPFLSILHDLWSLKCYETA
FT                 GVKSLSNSFDASQVHVNPDFPEAHHFSQTLPNDGAICVFRARVPRFEMVA
FT                 VKRIDYSEYTRNTIEDLLSSTEVGKVRVLCTIYAIDTDWAWYYISCKTCN
FT                 KKVNHIHAGVNGVNNKGKKPRFWCDTCKSVVTNVVSRYMIYAKVMDSTGE
FT                 AKLLLFDSICSEIIGESATSVLNGSVDEIEDPEDLPDSVKNLIGKTFLFL
FT                 VWVEKDNISDGKEIYKVSKVLLKDGLLEEQLLEDSAEHVNPASIVSGDQV
FT                 LLMLENGNGSPDSTTPSSKRVYARETSGSEGSSSSKKVCVVPLDLEKSLS
FT                 ENAEHGVALNPQVADSKEVTVPTEVKTSKVPVETENDQALVPATVVVKQE
FT                 VKKEMARNMATNWVICVKVLCIWDHPPNVNGDVTTMILVDAKHHRIVATI
FT                 PRLNLREKFRRVLQEGFWFNISQFRVIPSTHRVETWDTVVFRMSELVKSD
FT                 FTDYLFPNELEDSATDNVVDVTDAIGVVASVSSIKRFPYVCNKGETDYEA
FT                 RYVSFELMDNWEQKLKCVAVGSCCEEFVTKWSRRITRPTYNYEPVVCVVR
FT                 FWRIASIDGENVLTSEFGCSRLHIDPSFPYFDLASYLRSFKDADDQEVTM
FT                 EPVTEA"
XX
FT   CDS           0..0
FT                 /product="ATHEL1p"
FT                 /translation="MSCRRVAAAAPGDVTTTAISDDPIHPFIVIGRAIHL
FT                 PPFNFIRLATLLNLIRLATHLARCLRTILRSLYHKVTMLVCSFERSGLTS
FT                 IGRKNLHQPKTASTIPFSDLTKPNLQASPQNLDASMTPATAYTVNTGQEL
FT                 SNPYSCISNQTQTPVMSTEYSHIRNLQAEFEKASTSATNPRAEATINSDT
FT                 SSDDENMANMMFDGAVYESDTDVDQNYSLSSTDDESADTTTIQTESESMA
FT                 NVSTHEVEDIVSQLSENDIELDTFSSQMDIFMIPTESTQTANVPESAPKK
FT                 RGRPRLAVTKQMRMKQIRQQNKPGYLDHGDPTFKCKYCGAMMWYDERIRK
FT                 KETNKESGFTLCCGEGSVKLPFLKESPDLLKNLLSGNHPLSKHYRDNART
FT                 FNMVFAVTSLGGKVDKSMPKGRGPAMFRLQGGNYHLIGSLKPTPGDYAKY
FT                 SQLYIVDTENEVENRAIVIGKGKNAKPASGKPNLDKNLIEVIIKMLNRCN
FT                 PYVRRFRTARERIQTNDEEPFHMRIIADRQGVEGRTYSMPTTSEVAALIP
FT                 GDFRHGMPDRDIVIGKKSNGHLKRINQIHISYLALQYPLIFCYGEDGFRP
FT                 GIEKCSKSKSKKKNKKCISMRQWFAFRIQEREVECQTLLRSKRLFQQCLC
FT                 DAYTTIESNRLNYIKFNQSKLRCENYTSVKEAAAAGATTMEEEGNQLLIP
FT                 ASFTGGPRYMVQSYYDAMAICKHYGFPDLFITFTCNPKWPEITRYCDKRG
FT                 LNPEDRPNIIARIFKIKLDSLMNDLTVKKMLGKTVASMYTVEFQKRGLPH
FT                 AHILLFMHAKSKLPTADDIDKLISAEIPDKEKEPDLYEVIKNSMIHGPCG
FT                 SANVNSPCMVDGECSKLYPKKHQDITKIGSDGYPIYRRRKTDDYVEKGGI
FT                 KCDNRYVVPYNKKLSLRYNAHINVEWCNQNGSIKYLFKYINKGPDKVVFI
FT                 VEPTQQTTAGDSETPQQEQGSAEKKKNEIKDWFDCRYVSASEAVWRIFKY
FT                 PIQHISTPVQKLSFHVEGKQPAYFDPKSNIEDVLERVANADSQFMAWLTL
FT                 NRRNAVGKNGKRARECLYAEIPAYFTWDGENKSFKKRTRGFSIGRIHYVS
FT                 RKMEDEYFLRVLLNIVRGPTSYAEIKTYDGVVYKTFKEACFARGILDDDQ
FT                 VFIDGLVEANLTLTETEIKNYTLQEIEKIMLSNGATLEDIDEFPKPTRDG
FT                 IDNSNRLIVEELRYNRESNLKEKHEEWKQMLTPEQRGVYNEITEAVFNNL
FT                 GGVFFVYGFGGTGKTFIWKTLSAAIRCRDQIVLNVASSGIASLLLEGGRT
FT                 AHSRFGIPLNPDEFSVCKIKPKSDLANLVKEASLVIWDEAPMMSRFCFEA
FT                 LDKSFSDIIKNTDNKVFGGKVVVFGGDFRQVLPVINGAGRAEIVMSSLNA
FT                 SYLWDHCKVLKLTKNMRLLANNLSETEAKEIQEFSDWLLAVGDGRINEPN
FT                 DGVAIIDIPEDLLITNADKPIESITNEIYGDPKILHEITDPKFFQGRAIL
FT                 APKNEDVNTINEYLLEQLHAEERIYLSADSIDPTDSDSLNNPVITPDFLN
FT                 SIKLPGLPNHSLRLKVGAPVMLLRNLDPKGGLCNGTRLQITQLCTQIVEA
FT                 KVITGDRIGHIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAFAMTINKSQG
FT                 QSLEHVGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDGKLQKQTTN
FT                 VVFKEVFQNID"
XX
FT   CDS           0..0
FT                 /product="ATRPA1H2p"
FT                 /translation="MAERNYIPDLNLHRNNHIIYVKILSMWDLQSMIKPT
FT                 PSTMILCDVKGNKIDARIPWGEYMSNFKTSLFEGKWYYLQHFRLKRSTTI
FT                 PKYTDFHYEIEFMWHTKMWAVSDRAEQSSLKFIHADEVNGESEDHVVDVI
FT                 GVITTVSTVSSFPYCCPEGETDYDARYVIFTIRDNHERIITCVARGSACE
FT                 SFLSKVYRLIGSKTYNYEPITTVLRFFRTSMFKGSKALISEYGCSRVFIE
FT                 EEFPDFDVSSEPVGNVEGRIEYVAKD"
XX
SQ   Sequence 15809 BP; 5053 A; 2664 C; 2818 G; 5272 T; 2 others;
     tctacatata catttttggg gacgatttgt gtcgaaaaat cctttttcaa tttcgatatt        60
     gtatgtttag tccctacaaa atcaatcaga caagatattt tctttaggac aataaccaaa       120
     tttttgctca actattcacg tattgcacta attacttgcc taaacatata aattgttaag       180
     tactaccctc ataaattgca cacattaatc ccttgaaact ctactaattc aatattacac       240
     gaaataatat ttcctaaaaa tccgaacaac caaataacta accatatctt tacttacttc       300
     attccaaaat ctcgaaatat ttactacact cttaccaaat attcatattt cgatatcaca       360
     tttctataag ttaaacgatt attaatcatg cattaattcc ataaacctta aaggaaccct       420
     caatatatca tataatctta catatggtat agtcaatata tttttacaca ttctaaaaat       480
     catcatcaat tcgaaattcc aatatatcac ctcgaaaatt aaatttcgcc aactataata       540
     ttatccaaat tgttatggat tattgccttc caaaaatttt atccgatcga atcatctatt       600
     ctctccactc ctcattcata gcaattctgt ttcctgattt acatatatca ccttaactac       660
     aaaatctttt aacattcgct tgccagtcaa gacataatct aaatcacgca atattccatc       720
     ttctaaacca tccaaatcat tctgttttga atgtacaagc gtaaaaataa gggcaaatgc       780
     atctaccata tctcgacagt ttgattcaga atcaaatcaa aatctaaata cggcatttcg       840
     attattattt tgcacttatg atactcaagc atattcctat tctaaaccat tcagaatcat       900
     tctgtttcta aagaatttac gctctaaatc tttgcaaata aatgtttaaa gattcactcg       960
     gctactataa atacgcttct catatcattc catttcatca tcactcacac cgcaaacgag      1020
     agatcaaagc aattatacat tttgagaaat ggctgctaca ttcgcatacc ttaaagacgt      1080
     gaggccttac aaaaacgcat ggagagtcca ggtcaagatt cttcactctt ggaagcagta      1140
     cacaagcaac acccgtgaaa ccattgagtt ggtcatctct gatgaatatg taagaattac      1200
     tgttatctat gcaaaattta cgtttacata tacacaagtg ctaatataga tttctgttgt      1260
     ctttgtcata aggggaaaaa aatgcatgct accgtgaaga aggagttggt ttctaagttt      1320
     gttcacaagc ttattgttgg cgaatgggtc ttcattgaga tttttggtct tacctatgcg      1380
     tctggccagt ttcgcccaac caaccatcta tacaagatgg cgttccaggt tagaactgaa      1440
     gtcatgggtt gtgcttctgt ctctgactcc aacttcttga ctttggcgcc attttcaaaa      1500
     atccagagtg gtgagcttaa ccctcacatg ttggttggtg agttttctga ttctatatta      1560
     tatttttgct ttattccatt cacttgctat cattagatta tgaacacagt catgtttcac      1620
     tgcagatgct attggccaaa tcattactgt tggtgagttg gaggaactcg aggctaacaa      1680
     taagcctaca acaaagattg actttgagat cagagatcaa atgtaatgtc tatatcttat      1740
     tagtttattg cgatcttatt tgtttattgc ttatcaaaga aagtgtttgt ttcgattcat      1800
     ttgttctcat agggatgaga gaatgcaagt tactttgtgg ggaacatacg ctcagcaggt      1860
     ttacagagca tgtcaggaat ctgagggaaa gaatgtgatt tttctcattc gttttgccaa      1920
     aattaagagt tacaagggta tattcagttt ctttgtacct attccttttc tttccatact      1980
     gcatgatcta tggtcactta aatgttatga gactgcaggt gtgaagagtt tatccaactc      2040
     atttgatgca tcgcaagtac atgtcaatcc ggacttccct gaagctcacc atttcagtca      2100
     aacgtaaatg catctactct caacacaatc tacttttagt tgacttcttt atgtgctatt      2160
     gatcatcttt ttatccaaat gcagacttcc aaatgatggt gctatttgtg tgttccgtgc      2220
     aagagtccca cgttttgaga tggttgcagt taaaaggatt gactacagtg agtacacaag      2280
     gaataccatt gaagatctgc ttagctcgac tgaggttata ttcagctaac ttatctcaaa      2340
     gtttagaaat ctaactatca tcagtatcta atgtgttctg atattttata taggttggta      2400
     aagtcagagt tttgtgcaca atctatgcaa ttgatacgga ttgggcttgg tattacatca      2460
     gctgcaagac atgtaataag aaagtgaatc atattcatgc tggtgttaat ggagtaaaca      2520
     acaagggtaa gaagcctaga ttctggtgtg atacatgcaa gtctgttgta accaatgtgg      2580
     tctctaggta aatacatttc tttgaagatt atatttacat agcatactac tttgaaatat      2640
     tttattggaa ctgtgtgtat agtttggaaa ttaagttcgt aaaattttat tatatgcaag      2700
     gtacatgatc tatgcaaagg ttatggatag cactggtgaa gccaaattgc ttctgtttga      2760
     ttcaatttgc tctgagatca ttggcgagtc tgcaacctct gttcttaatg gatctgttga      2820
     tgaggtgtgt ttcttaaagt tgtcccgtgt ctactttatg tatactgaca tataaatata      2880
     tagagaactc aaatagctat ttacactctt ccagattgag gatccagaag atcttcctga      2940
     ttctgtaaag aatctgattg gtaagacatt tctgtttctg gtgtgggttg agaaagacaa      3000
     catctcggat ggaaaagaaa tctataaggt ttcaaaggtg cttctgaagg atggactact      3060
     agaggaacaa ttactagagg attctgctga acatgtgaac cctgcatcca ttgtgtctgg      3120
     tgatcaggta tttcacacaa catttcaagt tacattcttc attacaatca taaagttcat      3180
     aagagttttg gcaatttcta actctatata ttgcaggttc tacttatgct ggagaatggt      3240
     aatggatcgc cagactctac gactccatct tcaaagcgtg tttacgctag agaaacgagt      3300
     ggctctgaag gttcttcaag ttcaaagaag gtgtgtgttg taccattaga cttggaaaag      3360
     tctttatctg agaatgctga acatggagtt gccttgaatc cgcaggtggc tgattcaaaa      3420
     gaagttactg ttccaactga agtcaaaaca tcaaaggttc ctgttgaaac agagaatgac      3480
     caagcacttg tcccagctac tgtcgtggtg aaacaagaag tcaagaaaga gatggctagg      3540
     aacatggcta ctgtaagggt caaagtggag aagaacaagt gatctactta tctatttctt      3600
     ttaataagtg atgcttcttg aactgtgttt ggtcactgaa gctatgtttt gaattttttt      3660
     ttttttttta ttggattatg ttcgtgtttt tgttttcgaa gttattggat ttcatgtttt      3720
     ggattatgtt tcatctttaa ttttggagtt aatcttaaaa ttattttatt aagcttatat      3780
     gttcgatcat tactaatttt gtagccatct atatgaaaac atgcaatctc agttataatg      3840
     ttacagttag agggtccaaa gaaacttacc atttcatgtt gtatatatgt attcgactgg      3900
     cttcagactt ttaatgaatg actttagtgt atacctgtat caataagtta aagtttcatt      3960
     aacaatttgc tattccaatc ttttagatat aatatagatt tcatactata ttataaaatg      4020
     aaactataca aaagatcaaa tcaatattat gtcaatatta tgtcaatctt ttgacaatct      4080
     tacatataga ttcactatga ttaacatcta taactgtcta gatattagga aattgtctta      4140
     ttcgtaatca ttatacatct atgtctacga tatcttatta gattttctcg atatgtcata      4200
     ttgacgtcat catcgagaac ccgcggaacg attcgtattt tcttatttta aaaaacatct      4260
     gccattcatt gtatcttttc aacttatata tatattgagt aactgttcct tttcgatctc      4320
     aaccctaaaa gataaagcat aaacattaaa tccaaagaga gacatccgtg gcttatattc      4380
     acaaactcga agatttgaac ttgatgaaca atcagaattg ggttatatgc gtgaaagttc      4440
     tctgtatttg ggatcatcct ccaaacgtga acggtgatgt tacaaccatg attttggttg      4500
     atgcaaaggt tagtctttca aattcatctg ctcttttaga tcgttttttt ttgtggcttg      4560
     gtctattgca tgtcatcaaa atatcttgcg ggttctactt agtcttttta ttttgtcaac      4620
     ttaacagcat cacagaatcg ttgcaaccat acctagattg aatttgaggg aaaaattcag      4680
     gcgagttctc caggagggtt tctggtttaa catctctcag tttcgtgtga ttccctctac      4740
     acacagagta gaaacgtatg tgttgaaccg tctccatatc atgttcagat gggatactgt      4800
     agtgttcaga atgtcagagt tagtgaaatc tgatttcaca gactatcttt tccccaatga      4860
     acttgaggac tctgctacag acaatgttgt tgatgttact ggtatgttta taacgatcct      4920
     aattctttag atcatttcat gagtttatat ttgagtactc tgctgcagac aataactagc      4980
     ttttgatttt ttgttttcat agatgctatt ggtgtggttg caagcgtttc ttctatcaag      5040
     aggtttcctt atgtctgcaa taagggtgag accgactatg aggccagata tgtttctttc      5100
     gagcttatgg ataattggta agtttataag ttatagattt aggattagtt gatctagctt      5160
     gcagacttta catttagatt attgcgtgtg attatttacc acagtctacc aatggtacag      5220
     ggaacaaaaa ctcaagtgtg ttgctgttgg ttcatgctgt gaagagtttg ttaccaagtg      5280
     gtctaggcgt atcactagac caacatacaa ctatgaacca gttgtatgtg ttgtgcgctt      5340
     ctggagaatt gcttcaattg atggttagta ttctaaatct gctagataat tgtattgagt      5400
     tgtgtcccat gaaacctgtg tttacattta aattatgttc tgttttgaca aatgaaacct      5460
     gtgttttttc tgtgtgtaag gtgaaaacgt tttaacgagt gagtttggat gttcccgtct      5520
     acatatagac ccaagcttcc cttactttga tcttgcaagt tatctgtaag tctagcaatt      5580
     ggttttaaat ttctgtagtt tacaattaag aacagttact tagttttata atctattgtc      5640
     tctgtaccag gcggagtttc aaagatgctg atgatcaaga agtgacaatg gaaccagtta      5700
     ctgaagcttg aagctatttg ggtcggtttg ttcggttttg ggagaaattc ggttttaatt      5760
     ttttttaccg aatagaccca aattaaaatt cggttcgggt cggttcggaa gtcggttcat      5820
     tcgggtcggt tctagaaatt gtgttccgaa cttaaaacca aacaaaaatt tattcggttt      5880
     ctacggtttt taattcggtt tagatattta aaaaaaaaat tacactacca aaaatcctaa      5940
     tccaaacaaa ttacccacta caaattaata aaaagcccaa aatacaattc aaaaaagccc      6000
     aaaacaaaaa ctaatagccc aaccctagaa aatattaggg ttttgaccaa aagatatgag      6060
     ctgccgaagg gttgcggctg cggctccagg tgacgtaacg acgacggcca tctctgatga      6120
     tcctattcat cctttcatcg tcattggccg tgctattcat cttcctcctt tcaacttcat      6180
     tcgccttgct actcttttaa acctcattcg ccttgctact catcttgctc gttgccttcg      6240
     tacaattctt cgttctttat atcacaaagt aacaatgctt gtatgtaagg atgacgagag      6300
     cctatgatgt tttggatcca atttataaat caaaagaaga agcaacgaag aaagaagagc      6360
     gtacggagat gaagtgataa agtagaatag aagagatgag atatttgttt agatgtgaga      6420
     agcaagatga gctttctcga gaataagagg cggagccgaa gcgaagaaga taaacaaatt      6480
     agggtaactt agttaggttt acacttatat atggctccta ttaatggact taggtttaga      6540
     gtaataaacc gatcggtccg attaccgaac cgacccgaac cgagtaccgt tgcaacaaat      6600
     taattcaacc gatcagttta gacttctctc ttcggtttac gccgaaaccc gaaattttcg      6660
     ggttaatcag ttcggtttct tcggtttact ccgaactagt tgttatgttt ttagtacttt      6720
     ttaacattat gttatgtttt tggattgaaa catatctatt cctatcttat aacttttatg      6780
     atattgtgtt ctttaaagta ttcaattctt aaattttaat ttcgttttaa catatatgat      6840
     attgtcacta atttacaaaa ataattatac ctgtaacaga ttcagaacat tagcagaata      6900
     ttggttcttg gagaatcatt aaatccaaaa tatatgacag ttgagaaagg aaaaaatata      6960
     ttaccaactt cgatttggta ctccaaattg gttacataat ttgtaatcgt ctggtatatt      7020
     gtgtagcaaa gtaaatatac tttatgtaga aaatgcgaga acagagcaag ttgatatatt      7080
     tactcaccta ccaaatattt ccttaactaa caaacagatc ctctctaatc aagtatggac      7140
     tctattacat ttactttcaa caattctata aaatcttata ccagttatct taaatcactc      7200
     aatactcatg acagtctaga gtattgaaat gggaaaaaaa aacagccatg ctctgtttga      7260
     tctaatttca cctccaccct cagagaagag accacgtata ggtcaaataa cagcttcaca      7320
     aagccaactt actcagcgta atggatctaa ttctaatggt tatgtgtcta ttagatcagt      7380
     tttcaataca gttttcagag atatcactaa tttgattcag caacttctat acagtattca      7440
     catggtactg tcattactat acaatatcca actttcagat tctatctgct ttacaagatt      7500
     tgcaaatggt tgtcacagtt acttagaatg tgtttgaact actcgcaggt tcatttgaaa      7560
     gatcaggact tacctcgatt ggcagaaaaa atttgcatca gcctaagaca gcttctacta      7620
     ttccatttag tgatctcacc aaaccaaatc ttcaggcatc acctcaaaat ttagatgcat      7680
     cgatgacacc agctactgca tatacagtga acacaggtta gttattctat atatatcttt      7740
     tagttctcca aactactctg tctattatgt aatttttatc ttttaaatat ccgaatcatt      7800
     aatctaaatc ttattttatg tattacaagg acaagaactg agtaatccat attcatgtat      7860
     aagcaaccaa acacagacac cagtgatgtc aacagagtat tctcatatac gaaatttaca      7920
     agcagaattt gagaaagcat caacatctgc taccaatccg agtaagaata tataggttta      7980
     caaacatttc tcttaaagta tcattttata taagttgtgt taatttataa attttcgatg      8040
     tgatcatagg agcagaagct acaatcaatt cagatactag cagtgatgat gaaaacatgg      8100
     ccaatatgat gtttgatggt gcagtatatg aaagtgatac tgatgtggat caaaattact      8160
     ctcttagtag cactgacgat gaaagtgcag acacaaccac aatccaaaca gaatctgaat      8220
     caatggctaa tgtatctact catgaagtag aagacattgt gtcacagtta agtgaaaatg      8280
     acatagaact tgatacattc agctcacaga tggatatatt tatgattcca acagaatcta      8340
     ctcaaacagc aaatgtccca gaatctgctc ctaaaaaaag aggtcgtcca agattggctg      8400
     taaccaaaca aatgagaatg aaacaaatta gacaacagaa taagccaggt attgtttgtt      8460
     atctaaattc ttcattgtca tacatttatc tcagatattg taatgcaaac ccaaattata      8520
     gttgtttcag gttatcttga tcacggtgat cctacattca agtgtaagta ttgtggtgct      8580
     atgatgtggt atgatgagcg gattagaaaa aaggagacaa acaaagaatc tggtttcact      8640
     ctttgttgtg gagaaggaag tgtcaaactt ccatttctga aggagtcccc agatcttctc      8700
     aagaacctcc tctcaggaaa ccatccactc tctaaacatt acagagacaa tgctagaact      8760
     tttaatatgg ttttcgcagt gacctctctt ggtggtaaag tagataaatc tatgcctaaa      8820
     ggtagagggc cagccatgtt tagattgcaa ggtggaaatt accatttgat tggtagttta      8880
     aaacctactc ctggagatta cgctaagtat tcccaactat acattgttga tactgagaac      8940
     gaagttgaaa acagagctat tgtcatcggg taacatagct catatcttac atgctttaca      9000
     tgtctgttta ggttatgcac tgatatggat ttaaaaatag tttactgttg tttttcatct      9060
     aatgtagcaa gggaaaaaat gctaagccgg catcaggaaa accaaatttg gataagaatc      9120
     ttattgaagt cattataaag atgcttaacc gttgcaaccc ttacgttaga agatttagga      9180
     cagccagaga gaggattcaa acaaatgatg aagagccatt tcacatgcgt attatcgcag      9240
     atcgtcaagg tgttgagggc aggacatata gtatgcctac cacatcagag gttgcagcct      9300
     tgatccctgg agattttcga catggcatgc ctgataggga cattgttata ggaaaaaaat      9360
     caaatggtca cctaaagagg attaaccaga ttcacatttc ctatttggct ctgcaatatc      9420
     cactaatatt ttgttatggc gaagatggct tcagacctgg aattgagaag tgttctaaat      9480
     caaaaagtaa gaagaagaat aagaagtgta tcagcatgag acaatggttt gcattccgta      9540
     ttcaagagag ggaagttgag tgccaaactc tattacgttc aaagaggttg ttccagcagt      9600
     gtctctgtga tgcttatacc actattgaat ctaacagatt aaactatatc aagtttaatc      9660
     agtcgaaact tcgatgtgaa aactacacat ctgtaaaaga agcagctgca gctggagcaa      9720
     ccactatgga agaagaaggt aaccaactac tgattccagc ttcattcact ggtggtccta      9780
     gatatatggt tcaaagctac tatgatgcaa tggctatctg taaacattat ggttttccag      9840
     atcttttcat cacttttacc tgtaacccaa agtggccaga gataacaaga tactgcgata      9900
     aaagaggttt aaatcctgaa gacagaccta acattatagc ccgtattttt aaaatcaaac      9960
     tggattctct aatgaatgat ttaactgtga aaaagatgct tgggaagact gttgcatgta     10020
     agtatggttt agtatactac attactattt atcaaaatca tctaattcga aagtactcat     10080
     tctgttttgt ttgtgcttgc agcgatgtat actgttgagt ttcagaaaag aggcttgcct     10140
     catgcacaca ttctcttatt catgcatgct aagagcaaat taccaacagc agacgacatt     10200
     gataaactta tttctgctga gattcctgac aaagaaaaag aaccagatct atacgaagtt     10260
     atcaaaaact ccatgattca cggtccatgt ggttcagcaa atgtcaattc tccatgtatg     10320
     gttgatggag aatgttctaa actttatccc aaaaaacatc aagatataac caagattggt     10380
     agtgatggtt atcctattta tagaagaaga aaaactgatg actatgttga gaagggtggt     10440
     attaaatgtg acaataggta tgttgtgcct tataacaaga agctttctct tcgttataat     10500
     gctcatatca atgtcgaatg gtgtaaccag aatggctcca ttaaatactt attcaagtat     10560
     atcaacaaag gaccagacaa agttgtcttc atagttgagc caactcagca gactacagct     10620
     ggtgactctg aaacgccaca gcaagaacaa ggttcagctg agaagaagaa gaacgagatc     10680
     aaagattggt tcgattgcag gttagtctat ttctttgtta tttcttaatt atttggtttg     10740
     gtttcatatt gaataaaaaa atcattctaa tacataatga attgtttgca gatatgtttc     10800
     cgcatctgaa gctgtttgga gaatttttaa atatccaatt caacatatat caacgcccgt     10860
     ccagaaatta tcttttcatg tagaaggaaa acaaccagct tattttgatc caaagtcaaa     10920
     cattgaagac gttctagaac gagtagcaaa tgcagactct cagtttatgg cctggctcac     10980
     tttgaataga agaaatgctg ttggaaaaaa tggtaagcga gctagagagt gtttgtatgc     11040
     tgaaattcct gcatatttca catgggatgg agaaaacaag tcgtttaaaa agagaactag     11100
     gggtttttca ataggtcgca ttcactatgt ttcaaggaaa atggaagatg agtattttct     11160
     cagagtactc ttaaacattg tgagaggtcc aacgagttat gctgaaatca aaacctatga     11220
     cggtgttgta tacaagactt tcaaagaagc atgttttgca cgtggtattc ttgacgatga     11280
     tcaggttttt attgatggcc tggtggaagc aagtcagtgt tgttttggag attatctcag     11340
     gaattttttt tgcaatgctt cttctctcgg attctttgtc tagaccagca cacgtcaggt     11400
     cacaaacgtg gcatctttta gcagaggata ttttgaaaac aaaaagagat gagttcaaaa     11460
     atccaggttt ttatattttt taccttccat gtttccttac ttatagagtt ttaatgtttt     11520
     cacgttattt gttttaatgt tttcatctaa aattttgcag acctaacact cactgaaact     11580
     gaaattaaga attacacact acaggaaatc gagaaaatta tgctgtcaaa tggagcaacc     11640
     ttagaagata ttgatgagtt tcctaagcct actagagatg gtattgataa ttcaaataga     11700
     ctcattgttg aggagttaag atataaccgt gaatccaacc taaaagagaa gcatgaagaa     11760
     tggaaacaga tgctaactcc tgagcagaga ggcgtataca atgagattac agaggcagtt     11820
     tttaataatt taggtggagt cttttttgtg tacggttttg gaggtacagg gaagactttt     11880
     atttggaaaa ctctgtctgc tgctattaga tgtagagatc agattgttct taacgtcgcc     11940
     tccagtggca ttgcctcttt gttgttagaa ggtggtcgga ctgcacattc aaggtttggt     12000
     attccattga atcctgatga gttctctgta tgtaagataa aaccaaagtc tgatttggca     12060
     aatttggtta aagaagcgtc tttagttata tgggatgaag caccaatgat gagcaggttt     12120
     tgttttgaag ctttagataa atctttctcc gacattataa aaaacacaga caacaaggtt     12180
     tttggtggaa aggttgttgt ttttggtggt gatttcagac aggtgcttcc agtaattaat     12240
     ggtgcaggga gagcagaaat agtaatgtca tcgcttaatg cttcgtatct ttgggatcac     12300
     tgcaaggtgt taaagttgac taagaacatg agactactag caaacaattt gagtgaaact     12360
     gaagctaaag aaattcaaga gttttctgat tggttattgg ctgttggtga tggtaggata     12420
     aatgagccta acgacggtgt ggctataata gatattccag aagatttgtt gattaccaac     12480
     gcagacaagc caatagaatc gatcaccaat gaaatttatg gagatcctaa aatcctacac     12540
     gaaatcactg atcccaaatt ctttcaaggc agagctatat tagcaccaaa gaatgaggac     12600
     gtaaacacaa tcaatgagta tttgctagag cagttgcatg gtcagtgcac ttttactctt     12660
     cagtttaaag tttataatct ttatatgcaa tctatttttt attgaatata caactgacat     12720
     acattcaatt tgttttttgt ttcagctgag gaaagaattt atctatctgc tgattccata     12780
     gatcctacag attctgattc acttaacaat cctgttatca ctccagattt tttaaacagt     12840
     atcaagttac caggtttgcc taaccattct ttgcgtttaa aggtcggtgc tcctgttatg     12900
     ttactacgaa atttggatcc taaaggtggt ctatgcaatg gcactaggct tcagattacg     12960
     cagctatgta ctcagattgt tgaagctaaa gttattacag gagacagaat tggtcacata     13020
     gttttgattc ctacagtgaa tcttacacct acagacacta aacttccatt caagatgcgt     13080
     agaagacagt ttccactctc tgttgcattc gctatgacta taaataagag tcaaggtcaa     13140
     tctctagaac atgtaggact ttacttgccc aaaccagtgt tctcccatgg tcagctttat     13200
     gttgctttgt ctagggttac ctctaaaaag ggtttgaaaa tcctaatact agacaaagat     13260
     ggtaaacttc agaagcaaac aaccaacgtt gttttcaagg aagttttcca aaacatagac     13320
     tgattacatt gctgccagtc tatgttccaa gcatttgaga aaggtattct tcatcaacct     13380
     ttattcactt tatatacttt catttatggc tgttaaaccc ccacacagta actaacaagt     13440
     agtatttgat ctataatgtc acaggattat ttacattatt ctgctgaaga ggattaacta     13500
     gattcgcatt actaaagtag tcatagagaa ggattatgac atcttctccg acttcaagtt     13560
     cctcatattt taataaggca actatgttag tatgtcttaa ctaaattggt ttgattgaat     13620
     atttaaaatt agttttggaa tttaaacata atcaaccatt atttatattc ttgttgcatc     13680
     caaatacttt attggaatta tctactaaca tatatgcaat cattagcaac aaagacttta     13740
     ctatattgtg attggctaca gaatcggtta gcacataatt agagattgat taaatgattt     13800
     aaacggatat atagcaagaa acctttcgta tatattcact gaatctatat tcatctttca     13860
     tcgtgcttct tcaatatata tataagacca atatttggtt aacttccctc aatctatctt     13920
     ttctaaaaat ctgaacaatc accatccaaa cttccaatgg ccgagagaaa ttatatccca     13980
     gatctaaatt tacacaggaa caatcatatt atatacgtaa aaatattaag catgtgggat     14040
     ttgcagtcta tgatcaaacc aactccgtct accatgatcc tatgtgatgt gaaggtgagt     14100
     atctatgatg tatatttgaa ttgttattct ggtttttgct ttctattatt ttccaacaaa     14160
     ttttatatgg ttctcttttt attcagggaa acaaaatcga tgctagaata ccttggggcg     14220
     agtatatgtc caattttaag actagcctat ttgaaggaaa gtggtattac cttcaacact     14280
     ttcgattgaa gagatcaaca acaataccaa agtacacaga ttttcactat gaaatcgagt     14340
     ttatgtggca cactaaaatg tgggctgtaa gtgatagagc agaacaaagt tctctcaaat     14400
     tcatccatgc tgatgaagtc aatggagaat ctgaggatca tgtagtcggt aatataagtc     14460
     ttaattttat agtatatcat ttcttgcaat tgttattcct tagtactaat attttgatta     14520
     atactgactt attgttctgt tattgttaga tgttattgga gttataacaa ctgtctcaac     14580
     tgtgtcgagt tttccatatt gttgtcctga aggggaaaca gactatgatg ccagatatgt     14640
     gatatttacc atccgagata atcagtaagt taacaatcat ggacttatat tggtatagaa     14700
     attcgttagg aacagacata tatgtgtagt atgataaatt tgtattctct ttggttgtag     14760
     tgagaggatc ataacttgtg ttgctagagg gagtgcgtgt gagtcttttc tatcaaaggt     14820
     ttatcgactt attggttcga aaacttacaa ctacgagcca atcactacag tgctccggtt     14880
     ctttagaact tctatgttta aaggttagtt tatatacgtt aatatgttat actcttacct     14940
     tagaatgtta aatcatgtga tatataacta atcaacagaa tgataacaaa tattatagga     15000
     tctaaggcct taatcagcga gtatgggtgt tcaagggtct tcattgagga agagtttcca     15060
     gactttgatg tatcatgtta catgtatgtg aaagacatta gatactggtg atagtttgtt     15120
     tattagatac taagttattc aagaagtttg acatcttttt atgtttttgt tacaacaatt     15180
     tttttgcagc tgaaccagtt ggaaatgttg aagggaggat tgagtatgtt gctaaggact     15240
     aatcctagag tcagattcgt cggaagaagg atttgtttaa tctatttacc ttgctttcaa     15300
     aaatcaaatt attcattctt aagttgattt tgtttttgtc ttttgaacta ttgtttgtaa     15360
     gaatgatcat aaattgtgtt cattttggga gagattgttt cagtttaaaa acaatctaag     15420
     tattatataa taaatattta gtatadaaat taaattattg tagaaattta aatacatcat     15480
     atacttcata taacaataga gcasccatgt aattttaatg ataattacag ttacaatcca     15540
     aaaattaaat ttcaaaccaa ttgaatcata tgaatttaca tgtaataaaa tacgatgtat     15600
     ataaatagaa tattatacat gtttgcggaa ctttacaaaa ccagaccgaa acatacaaat     15660
     ataatcaccc atgtcaataa atataaatat atagtaaaaa atacaaatta actataatga     15720
     tttaactgtc aattatatta taatgaaacc atcatattac gatcaaacgc aaatactcaa     15780
     cctgcggtgt accgcaggtc cgtatctag                                       15809
//
ID   HELITRON3   repbase; DNA   ; ATH   ; 15333 BP.
XX
AC   AL132909;
XX
DT   01-FEB-2001 (Rel. 6.01, Created)
DT   24-MAY-2001 (Rel. 6.04, Last updated, Version 2)
XX
DE   HELITRON3 is an autonomous DNA transposon.
XX
KW   Helitron; DNA transposon; Interspersed Repeat;
KW   Autonomous DNA transposon; HELITRON3; HELITRON class.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-15333
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON3.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
RN   [2]
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (00-MAY-2001).
XX
RN   [3]
RP   1-15333
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
DR   GenBank; AL132909; Positions   74652   89984.
XX
CC   HELITRON3 is a DNA transposon that belongs to the HELITRON
CC   superfamily. There are two copies of HELITRON3 in the
CC   genome; they are ~93% identical to each other.
CC   HELITRON3 encodes 3 proteins similar to the replication
CC   protein A: 404-aa ATRPA3H1p, 272-aa ATRPA3H2p and 201-aa
CC   ATRPA3H3p. It encodes also one 1190-aa protein ATHEL3p
CC   composed of the rolling-circle initiator and DNA helicase
CC   domains.
XX
FT   CDS           0..0
FT                 /product="ATRPA3H1p"
FT                 /translation="MVASFAFLRDVRSYKTSWRVQVKVLHSWRQYTNMTG
FT                 ETLELVLADSQGVKIHASVKRDLVSKYVNNLPLNEWRFIETFALNHASGQ
FT                 FRQDVIGQVVNIVMRECPLLYGEHLLREFLVHVNLLMVKCLPADGLSLTF
FT                 RESVPKFQMITVKQDYDCSQYERKSIRDLLHSMEIGKVRVVSTIYALDLD
FT                 WSWYYFSCRNCNKKVTHIHAGVNTTSSKSSKPRFWCDVCKNAVTNVQAKY
FT                 MLYVKVMDDSGETKFLLFDTICADMVGESCTSMLGGSFNEIEDPNDVPDG
FT                 LRNFGWEDFSISVTRLLSTDGLCGEAVLEDSDHSVNPASIVSGDQCIMLT
FT                 SSQKTSNSVTSSSKRVYATKLSDSEQSSSSKKLCVQPLDLEKSEPDINDE
FT                 VAIKEVKTAEITDIVEGA"
XX
FT   CDS           0..0
FT                 /product="ATRPA3H2p"
FT                 /translation="MGTIDYIRDFNLERTNWVLYVKILSLWNHLAVNNGE
FT                 PTTMILCDENRCRIDARVPSRNYLYNFRSTLREGTWYYMADLLLKRATST
FT                 TKYSSFIYEIKFIWPTTMWRVSPRSTQISLQVIHSDEVEYEPDTYVNDKL
FT                 NVVGIISSVSTFARFPYVYREGETDYEARYVKFTIRDNLNRITTCVAKGR
FT                 ACELFLIKFYRRIGLVTYNFEPIVAVVRFWRVHDFKGSNALFSEDGCSKL
FT                 LIDPLFPDYDLQTYIGWNAYGDDEVVDGKIDYVIEN"
XX
FT   CDS           0..0
FT                 /product="ATRPA3H3p"
FT                 /translation="MSFLKTFSDVHPRKTRWFVFVKLLRLWNWPPNYDGE
FT                 EPTMILADEKGNKIDANSPLHVKKEVLISTLKEGQCCVSNRQNSVVKREF
FT                 EGDYESSYPTFTIKDTTSQLMKCVAIGRSCDEFEKKWYKKISEINFKMEP
FT                 VMIILRFWKMSEFQGNPCLISVGGCSKVYIDPNFRGLDKNTYLRNFAGSD
FT                 DEDDDIFMETVESNF"
XX
FT   CDS           0..0
FT                 /product="ATHEL3p"
FT                 /translation="MTDTNYIPDMNLHRKNHVLYVKILSIWDHHSIICGT
FT                 PATMILCDVKDFRLKRATSISKYSDYVYEIEFMWHTKMWPISDRSDESSL
FT                 QFIHADEVESESEDYPSEAHTNWTMSKKHTSNNENIDSSSNPPKKKQIQS
FT                 LMFQSIRMSQWNSPSSHGYVPFSSVLNTVQRDVSNTSQLHNSPNVRGEVS
FT                 TPNISARRRQTSKGMPLGSHIPSTYPMSSISKQTINDSECLTQEQSSCVN
FT                 TSILNMPRKSLHIDFARVSSESNVEVKLSSTTADHTSRDEEMYDEMNGIN
FT                 LNEEEELEQNYDISSGEDVGSPIRIQRMDLDEAQDMGTCPSVLSNEAIST
FT                 EQASHDSIGQKSKESESLKIKKTRRRTTKSIPLKSPELVKELLTDDDAQG
FT                 RNYRKHAWIYNMVFAMTSIGGKVDKSMPKGQGPIMFRLQGAIGRKEKDQR
FT                 TYIRPTTSEVAELIPGDFENGMPDLDIVIQEKITVEFQKRGLPHAHILLF
FT                 MDSKSKLPTADDIDKMISAEIPDKEKEPELYEVIKKCMIHGPCGAANKNS
FT                 PCMVDGKCSKNYPKKFEEITKTNENVNGIAAGEEPLPTKKKKDEIKDYFD
FT                 CRYVSASEAVWRIFKFPIQHRSTPVQHLSFHVEGKQPAFFKGKESIKEVL
FT                 ERIANQDSQFMAWLTLNRNDVVGKNRKRARDLLYVDIPAYFTWDRINKMW
FT                 NKRSCGFSLGRRNYVPRKLEDEYFLSVLLNIVRGPTCFAHIKTYNGVVYP
FT                 TYKTVSFARGILDDDQVYIDSLVDASQFCFELELTEAEIKNYTLQEIEKI
FT                 MLFNGGTITEIENFPQPTRECIDNSNRLIVDEMRYDRQYLTGKHAEWIDM
FT                 LTPEKRGVYDEITGAVFKDLGGVFFVYGFGGTRKTFIWKTLSAAIRSRGD
FT                 IVLNVASNGIASLLLEGGRTAHSRFSIPLTPDEYTSCRIKPKSDLANLIR
FT                 KASLIIWDEAPVMSKWCFESLDKSFSDIIGNKDNKDHCKVLKLTKNMRLL
FT                 SKDLSEEEAKDIKEFSDWLLAVGNPIEAISHEIYGDPAMLKVNEDQKFFL
FT                 KRVILSPTNDDVHTINQYMLNNMEGEERIFLSADSIDPSDSDSLKNPVIT
FT                 PDLLNSIKLSGLPHHELRLKIGAPIILLRNLDPKGGLCNGTRLQITQMTI
FT                 QVLQAKVIIGDRSGDIVLIPLINITPSNMKLPFRMRRRQFPVSLAFAMTI
FT                 NKSQ"
XX
SQ   Sequence 15333 BP; 4967 A; 2502 C; 2752 G; 5112 T; 0 others;
     tctacttaac atttttgaag tacaaaataa ggaatttatt gggtcgggtt ttgttttggg        60
     ttttacccac tttttttgac cggatctttg gcccaaatca tgttaattgg cccatcaacc       120
     tccaagattt cgtctccttc aaatcctctc acacctacat tcactcacac aatgaatcac       180
     ggaaaatcaa tctcttaatc aaggcacaaa tctattacat tcagttttcc taatctatca       240
     aagaatcttt actaatcaag ttgttgatat tataacttcc atgaatctta cctatcattt       300
     acctataatt gctaatcgaa tcaagctcat tatattctga ctatttatct ttcaaaccat       360
     ttatattcac tgtcctatga taacgcttat ttgaaatgca gttaccaaaa caatcaaatc       420
     catatctact ctgtttggaa gttacattca agatatgaca gtatctactt aacatattca       480
     atcgccttca atataaagat attgatcaag ccgcatatcc agcttcattt atttgcagag       540
     aatattcact gattgattct aaaaagatta cgcctactct ataatctaaa accctataca       600
     atctcacaac actataaata tactctatat tgcataccat ttctacacat tgcagaatat       660
     caagatatcg ttccattttt gagaatcact ttgcttacct ttcaaatggt tgcctctttt       720
     gcgttcctga gagatgtccg atcatacaag acctcatggc gtgtccaagt caaggtgctt       780
     cactcttggc gtcaatacac caacatgaca ggtgaaacac tcgagttagt gttggcagac       840
     tcacaagtaa gttaagtaga tattgttttg acgcatttga ttgcgaccaa atatgcacta       900
     tgttattgac atgtgctaaa tatttgtttt ctgtttatac tagggtgtca agattcatgc       960
     atcagtgaag agggacttgg ttagcaagta tgtgaacaac ttgcctttga atgagtggag      1020
     gtttatagaa acctttgctc taaaccatgc atcaggtcaa ttccgacaag atgttattgg      1080
     tcaagtggtt aatattggtg agcttgagac tctcgaggct agcaacaaac ctaccacaaa      1140
     gcttgacttc gaattaaggg acgacacata agtctatgta ccctgaccta aatcctcaag      1200
     aatgtaattt agaaagcaat ctcttgatat attgttttgt ttagtgatga gggaatgtcc      1260
     tctactttat ggggagcatt tgctcagaga gtttttagtg catgtgaatc tgctgatggt      1320
     caaatggtta tttgtgttct gcgatttgcc aagattaagt cttacaaagg tacatgtcta      1380
     ctcttaactt tcttgatttt actcattgat tataacattt atgaccataa ctaaaataca      1440
     gtttctaatg tatgtaggag ttaggacttt ttctaactct tttgatgcat ctcaagtcca      1500
     catcaacccg aaatttccat gaagttcaag cttttgtttc tcgctttgtt ttctttaaga      1560
     gtctgtttat ttgatagtgt aatgttgttc tgattccgtt tatatgatgt gattgaacag      1620
     tttacctgct gatggtcttt ctctcacttt ccgtgagagt gttccaaagt ttcaaatgat      1680
     tactgtgaaa caagattatg actgttctca gtatgagagg aagtcaatcc gtgatctgct      1740
     tcattctatg gaggtttgag ttctaaattt tagcagtact atgaatttga gtaaacatat      1800
     acttatataa attttcattt cagattggaa aagttagggt tgtctccacc atatatgctc      1860
     ttgacttgga ttggtcatgg tattacttta gttgtcgtaa ttgcaacaag aaagtgactc      1920
     acattcatgc tggtgttaac acaacttcat cgaagtcatc aaaaccaagg ttttggtgtg      1980
     atgtctgcaa gaatgcagtc actaatgtgc aagccaagta agtatgcctc acagtttaat      2040
     tgctttgttc taccttaact agcaaatgca cacattaatt gacccttata taatttaagg      2100
     tacatgcttt atgtgaaagt catggatgac agtggtgaaa ccaaattcct tctgtttgat      2160
     accatctgtg cagacatggt tggtgaatca tgtacatcca tgttaggtgg ctcttttaat      2220
     gaggtatact ttcaatcgaa atagttatct tcttatgtat gtggaatcta atatgttgca      2280
     agtgtatata aactggctaa ctaacaattt atggtcttac tatttagatt gaggatccaa      2340
     atgatgtccc tgacggtttg agaaattttg gttgggaaga cttttctatt tctggtatct      2400
     gttgagaaag aaaacatatg ggatggtaag gattctttta aagtcacaag gctattgtct      2460
     accgatggtc tctgtggtga agcggtcctc gaagactcag accactctgt caaccctgca      2520
     tccattgttt ctggggacca ggtatgattc tacacatgtt ctccttaaca aatcaggtgt      2580
     aaattatata gtatcaatga aacttttcta aactctgttt tcgtgtttac agtgtattat      2640
     gttaacttcg agccagaaga cttctaactc agttacttca tcatctaagc gtgtttatgc      2700
     tacaaagttg tcagactcgg aacaatcatc cagttccaaa aagctttgtg ttcagccatt      2760
     ggatttggag aaatctgaac ctgatattaa tgatgaagtc gctattaagg aggtgaagac      2820
     tgctgagata actgacattg ttgaaggtgc ttgaattaca gataaaggga agggtgtgaa      2880
     atgccacgaa acacctcagg tggtagtcaa gaaggctcca aataaggtgg ttactaagcc      2940
     tatgcctgtg aggatcaagc aggaaaagaa gtgacatgtt ttcaagttgt cttgatccat      3000
     gactcatgtt tatgttggtt ttagaagtta ttgctttggt tttgtttttc gaacaattgt      3060
     ttaagtttaa taccttttgt tcaatcttga atttgtttct ttagaccttg atattaattt      3120
     gtttctgttt actttcctta attttgatta ttaactattt tattaggtta tacatataat      3180
     caagctaatg ttagtaacca acaactaaga gagtgaatgc ctataatcaa actaatgtat      3240
     atgggactct gactgatgca tataagtatg aatattcatg gaaagaggat atttacctta      3300
     tgctcatggt gaacttcata tatttgaatt cctgaaaaca aatgtaaata tttagtatac      3360
     acgcaataat aatttactta gtttcaaaaa aataatgatt gtaatctgaa gtcgaaagat      3420
     atgtaatcta tgcaatcatt agaacaaaga agtttctatc ttttgattgg atcaaggatc      3480
     ggttattcat aatctcgata ttttcattat atttcattgt ttatattagg aaatatacat      3540
     aactcaatcg tttcgacttt cctatccttt caactgtcta tatatatgaa agacctttgg      3600
     ttaaaaaata aaactatctc ctctcttaac ttctctgtaa acagtttcct taaaaactaa      3660
     acctaatggg taccattgac tatatccgtg atttcaatct cgagagaacc aactgggtcc      3720
     tctatgtgaa gatcttaagt ctatggaacc atctggctgt caacaatggt gaaccgacaa      3780
     ccatgattct ctgtgatgag aatgtgagtt cataattcaa ctacttgtga agttttcata      3840
     attttgtttc tgaaacctgt tcataatcta gagtattttt gtttacgctt cacagagatg      3900
     cagaatcgat gccagggtac cttctcgaaa ttatttgtat aatttcagat ctaccctacg      3960
     tgagggaacg tggtattaca tggcagactt gcttctgaag agagcaactt caacaacaaa      4020
     gtactcatca tttatttatg agatcaagtt tatttggcca acaacaatgt ggcgtgtaag      4080
     tcctagatcg actcagattt ctctgcaagt aatccattct gatgaggttg aatatgaacc      4140
     tgacacttat gttaatgata aactaagtta ttcattctaa tgttcttata gttacagtta      4200
     ttgcataagg aaaatttaca gactctgact taactatttt gattgtaaga tgttgttgga      4260
     atcatatcga gtgtttctac ttttgcgagg tttccttacg tctatcgtga aggggaaact      4320
     gactatgaag ccagatatgt gaagtttact atcagagaca atctgtaagt tacattatct      4380
     atgtaacttg tagacatgta ggtttataag gaacagaact gtctgatgat tggtttcttt      4440
     ggattgttgt ttgttgtagt aataggataa ccacatgtgt agctaaaggg agggcctgtg      4500
     agttattttt gatcaagttt tatcgacgga ttggtttggt cacttataac tttgagccaa      4560
     ttgttgctgt ggtccggttc tggagagttc atgatttcaa aggttagtta aaattcatct      4620
     ataagtaggc gctttcatag attcatgatt atacaataga catttaaagt agataacaat      4680
     actgattttg aagtctctta taggatccaa tgccttattc agtgaggatg gatgttctaa      4740
     actactcatt gatcctttat ttccagacta tgatcttcaa acttacatgt atgtgaaatc      4800
     gagtagttta tattaactgt acaaagacgt attcctatac tttttccaag tgaattgagt      4860
     tttattgttt tcttacagtg gttggaatgc atatggagat gacgaagtgg ttgatgggaa      4920
     gattgattat gtaattgaaa actaaagccg tgttcttatt tctgtttttt gtctgaacta      4980
     atggattgtt gtcctgcttt tgaagtccta tgactctttt atttatgttg tggttccttt      5040
     gatatttccc aaatttaagt acctatttga acttcttatt ttgttgatct actgttaata      5100
     tatgcttatg ttattagttg tatcatagtc actaccagta tttttaacaa ttttagaaaa      5160
     actagattag taacttgcaa aataaaattt tgaaatgtgt aaaactcaaa tcaatttaaa      5220
     ccaaatggaa gccagttata tgataaaaag atggatgtga tataactgag tttttcatgt      5280
     tgaaaaactg aatttaaaac acaagccaat ccaatggttc ttgaaaacac aaaaagaatc      5340
     tgattgtttt caaaactgta ataatttatt ttagatatta aaaaaatctc ttgaaaatta      5400
     aattacataa aagataaatt ggaagccata agttatatga aatataaaag tcatcttctt      5460
     atcccattca tcttccacac aagaacaaaa acgtttagag agaaatataa acacttttct      5520
     gaaatgtcat ttctaaagac cttctcagat gtgcatccta gaaagacgag atggtttgtc      5580
     tttgttaaat tactccgtct gtggaattgg cctccaaatt atgatggaga agaacctact      5640
     atgattttgg ctgatgagaa ggtatggaag ttatgtctaa agctatgcct gatttataat      5700
     tgtggatttt taattatcac tatacacatt catgcaagat ttagtcagat ttacaaaaac      5760
     tttctcaggg aaacaaaatc gatgcaaatt ctcctctcca tgtaaagaaa gaagtgttga      5820
     tttcaacact taaagaaggg caatggtatc tgctatcaca ttttgaagtt gccgtggcta      5880
     atccactgga tagattctct aaccatgtgt tctaacttac gtttttaaga aagactacaa      5940
     tggaggaagt agcttctaga aaaagatgtc agtttattga ttgttagcct ttataccgga      6000
     tcaagcatgc ttctactgtt gagaagcaat ttgttgttgg tcagcacttg agtatttgtt      6060
     tttaactatg ttcggactac tatatggctt acagatataa atactaaatt gtatgattct      6120
     tggtttttat atatttacag atgcaatggg aatcattgaa gctgtgtctc caatcggcaa      6180
     aattccgtgg taaagaggga gtttgaaggt gactatgaat ctagctatcc gactttcaca      6240
     attaaagata ccacgtaagt ttatcctcaa ctatcataca ttgtacttag gttgatgaca      6300
     cttttggata atggattcaa tgcactacat gttataggtc acagttaatg aaatgtgttg      6360
     caataggaag gtcttgtgat gagtttgaaa aaaaatggta caagaaaata agcgagatca      6420
     attttaagat ggagcctgtg atgattattc tccgtttttg gaaaatgtct gagtttcaag      6480
     gttatattcc tatttctttc tactatgatt gttctactag gatatctaat ttatgaatca      6540
     gataatctaa attatgtttt atacacagga aatccatgct tgataagcgt tggtggttgt      6600
     tcaaaggttt acattgatcc aaatttcaga ggattagaca agaacaccta tctgtaagct      6660
     acttatttat tacagaatca ataacctttg aagtttttta aagttccata ttaactttgt      6720
     ctatttgttg tctatttgta cagccgtaac tttgctggat cagatgatga agatgatgac      6780
     atttttatgg agactgtgga gtccaatttc taagttatcg atatgccatt ttaaatccca      6840
     gtgtactaag cttcatataa ctaggtttat tttcttctgt tctatgttgg acttccttgg      6900
     agtactttat attatgaatg cttatgtcta cttttatctg aatataagta gtgtaccaac      6960
     ttatattcag cataacatgt tttacaggaa atgctaactt aaactactag agtaaaagaa      7020
     gaatcgtatt acctttatga gtttgctatc ttctctgact tgaaatgcct gaaattatag      7080
     taagagaaca aacttagtat tattactgaa ttatttggat aatatgaaaa atccgtgaag      7140
     gaaataacta taaacaacca ttattcatgt agctaatgaa tcaaaatact taatcatcat      7200
     tatctactta acatagttgg aatcattagc aaattttagt tctgtaattt gattggctac      7260
     agagtcggtt atgacaaaga tataattgat taaaggatgt gaacggttat tgaggaagga      7320
     aacctttcat atagattcac taaatcgtta caacattcct ctccattcaa tatatatata      7380
     aggcaaaggg taggttaact tcagacaatc tgtactcact tttaaatctg tatcaaatcc      7440
     atacaccaag atatgaccga cacaaactat atccctgaca tgaatttgca caggaaaaat      7500
     catgtcctat acgtgaaaat cttaagcatc tgggaccatc attctattat ctgtggaact      7560
     cctgctacca tgatcctctg tgatgtgaag gtttgttcta gaataaattt tttggtttcc      7620
     tattttttgt tcttgctttc tattgtattc caaagaactt gatatgtttt tatttttttc      7680
     caggggaata gaatcgacgc tagagttcct tagcgtgatt atttatacaa tttcaagcct      7740
     agcctatttg aaggaaaatg gtattacatt caggacttcc gattgaagag agcaacttca      7800
     atatctaagt actcagatta cgtttatgaa atagagttta tgtggcacac caaaatgtgg      7860
     cctataagtg atagatccga tgaaagttct ctccaattca tccatgctga tgaagtcgaa      7920
     tctgaatctg aggattatgt aactggtaat ctaagactta tctatatagt ttatgctttc      7980
     tctctattct atttccttag tactaagatt tataagttat ttgattgctc tgttgttatt      8040
     gttagatgct atttgagtca tatcaagtgt ctcaactgtg tcaagatttc catatgtctg      8100
     tcgtcaagac acttgatttt atcttcattt tttcacatag ccgagtgaag cacatacaaa      8160
     ctggaccatg agtaaaaaac atacatcaaa caatgagaat attgattcgt catccaatcc      8220
     gccaaaaaag aaacagattc aatcacttat gtttcaaagc attaggatgt ctcagtggaa      8280
     ttcaccttcg tctcacggtt atgtcccctt tagttctgtt ttgaacacag ttcagcgtga      8340
     tgtaagcaac acctctcagt tacacaattc acccaatgtt agaggtgagg tgtccacccc      8400
     taatatatct gcaagacgaa gacaaacgtc aaaaggtata aaataggata tgtacctgat      8460
     aaagaccagt ttgtatcagt atatttcaac tcattatact gaacattacc tctcatttaa      8520
     acaggaatgc cacttggatc tcatattccg tctacatatc caatgtcaag cataagtatg      8580
     acaggttgta ctccatttgt acttagagat atcaccaatt catccgttgg gccacatggc      8640
     agaatggatg gcacactgct tacgtgtcct gagactgaaa aaagacagag aaaagattag      8700
     taactaatta ttcaaactgt gaatatttta atacatgtgg tttatgcaat aaagtttttg      8760
     cttataggca aacaaactat caatgattcg gagtgcttga cccaagaaca atcatcatgt      8820
     gtcaacacca gtatacttaa tatgccaaga aaaagtctgc acatagactt tgctagagta      8880
     agttctgaat ctaatgttga aggtgaatga ttatctataa gtattcctat atgtactaaa      8940
     acctagccaa ctctgtgttt tgactaatca tctacttaac attatccagt gaaactatca      9000
     agcacaactg cagatcacac tagcagggat gaggaaatgt atgatgagat gaacggtatc      9060
     aatctcaatg aggaagagga actagaacaa aactatgaca taagtagcgg tgaagatgtt      9120
     gggtcaccaa tcagaataca gagaatggat ttggatgagg cacaagacat gggaacttgc      9180
     ccatctgtct tatctaatga agctatttcc acagaacaag catcacatga ttccataggt      9240
     caaaagagca aagaatcaga atcactaaag ataaagaaaa cacgtcggag gactacaaag      9300
     agtatacctt taagtatgga atccgactat tgcttttaat ttacatgcct tttatataga      9360
     cttattaaga aggatattga ttatggttat ttgtttctca gcttatcttg atcgtggtga      9420
     ccctacctat tagtgtaaat attgtggtgc attgatgtgg tatgatgagc gaatcaacaa      9480
     aaggcgcaat ctaaaagatg atgcaccttt tacactttgc tgtggacaat ggtcagttaa      9540
     attatctttt cttgaagagt caccagagtt agtaaaggaa cttcttactg atgatgatgc      9600
     acagggtcgg aattatagaa aacatgcttg gatatataac atggtttttg ctatgacctc      9660
     tattggcgga aaagttgata aatctatgcc aaaaggtcaa ggacctatca tgtttcgatt      9720
     gcaaggaggt aactatcatt tgataggcag tttgaaactt tcggaaggtg attatgcaaa      9780
     gtactcacag ttatatatag tggatacaga aaaatgaagt ggataacaga gctactgtaa      9840
     tcgggttagc attctcaaaa ccaaatcact gaaacataag caatgaccta acaattttgg      9900
     ttcttttttg ttaacacatt ttatgctctt tctataattg tagaaaggga aatgatgcaa      9960
     ctaacggagg tcgtaagggc aatctgaaca aaaaaaacaa ttgctgccat aatggatatg     10020
     ttaaacgaag ttaatccata tgttgcaatt tttataattg ccaaggacag attccaagct     10080
     gctgactgct aacctttctg tatgagaata gccattggtc gtaaggagaa agatcaaagg     10140
     acttacatta ggcctactac atcagaggtt gcagaattaa tcccagggga ttttgaaaat     10200
     ggtatgcctg accttgacat tgttattcaa gaaaagatta caggtcacct tactagaatc     10260
     agtcaaattc atatttccta tctagctttg caatatcctc taatattctg ctatggtgaa     10320
     gatggtttta cccctgggat agagaaatgt tacaaaggaa atgacaaaaa gaagaagcaa     10380
     aaatgcatat ggttcaaagt tattatgatg ctatggctat atgcaaacac tatggatttc     10440
     ctgatttatt catcacattt acatgtaacc ctaagtggcc tgagataaca agatatgtca     10500
     aggaaagagg attgactgct gaagataggc ctaatattgt tgctaggatt tttcaagatc     10560
     aaattagatt ctctcatgca tgatccaact gagaagaaaa tgcttgggta gactgtcgca     10620
     tgtaagttaa tttatttcac tatcattctg tacttaaatt gttgatgtca tttacttaca     10680
     ataaatattg ttttctgatc gcatcaatgt atacagttga attccagaaa agaggccttc     10740
     cacatgcaca catccttctg tttatggact ctaaaagtaa attgccaaca gctgatgata     10800
     ttgacaagat gatttctgcg gagattccgg ataaagaaaa ggaacctgag ctatatgagg     10860
     ttattaagaa gtgcatgatt catgggccat gtggtgcagc taataagaat tctccatgta     10920
     tggtcgatgg caagtgttcg aaaaattatc caaaaaagtt tgaggagata accaaggttg     10980
     gtaaggatgg gtttccagtc tatagaagaa agcaatctca taactatgtt gagaaaagtg     11040
     gttttagatg tgataatagg tatgtggttt cttacaataa gatattgtca gttcgatatg     11100
     gtgctcatat caatgtggag tggtgtaatc agaatggttc tattaagtac ttattcaagt     11160
     atataaataa gggtccagat cgatttgcat ttgtggttga gcttgataaa ccacaaacaa     11220
     catagactaa tgagaatgtc aatggcatag cagctggtga agaaccctta ccaactaaga     11280
     aaaagaagga cgaaatcaaa gattatttcg attgcaggtg cttttctaca tagtctttcc     11340
     cagctttgca tttatataaa ttgtcccgat atagaattta tagtttattt cttttctata     11400
     ttacaatttc agatatgtat cagcctctga agcagtttgg aggatattta agttcccaat     11460
     ccagcataga tcaactccag tgcagcacct atcatttcat gttgaaggga agcaacccgc     11520
     attttttaaa gggaaagagt ctataaaaga agttttggaa cgtattgcca accaagattc     11580
     ccaattcatg gcttggttga cattaaacag gaatgatgtt gttggtaaaa atagaaaacg     11640
     tgcacgtgat ctcttatatg tagatatccc agcgtatttt acttgggata gaataaataa     11700
     aatgtggaac aaaagatcat gtggattttc attgggacgt agaaattatg ttccaaggaa     11760
     attagaagat gaatattttc taagtgttct gcttaacatt gtcagaggtc caacgtgttt     11820
     tgctcatatc aagacctaca atggtgttgt ctacccaact tacaaaacag tctcttttgc     11880
     tcgtggtatt cttgatgatg accaagttta cattgacagt ttggtggatg caagtcaatt     11940
     ctgctttggt aatttcttga ggaatttctt tgcaatgttg cttctatctg gttcattatc     12000
     tagaccataa tatgtttgag aacagacatg ggagttatta tcataggata tgctggaaaa     12060
     aaagagagat gactataaca atcaaggtat gatcgtgtct aagcttcatt catttcattt     12120
     catatatatg taatgttaca tatgaattca cacatcattt attgttattc ttcttttcag     12180
     agttggaatt aacagaagct gaaatcaaga actacactct tcaagaaatt gagaagatta     12240
     tgctgtttaa cggaggtaca attacagaga ttgagaactt tccacagcca acaagagaat     12300
     gtattgataa ctccaaccgg ttgatagtag acgagatgag atatgaccgt caatatttga     12360
     ctggcaagca tgctgagtgg atagatatgc ttacacctga gaagagaggt gtgtatgatg     12420
     agattacagg ggctgttttt aaggatctag gtggagtgtt tttcgtgtat ggatttggag     12480
     gcacaagaaa aacttttatt tggaagactc tatctgctgc aattagatct agaggtgaca     12540
     tagttctaaa cgtggcttcc aatggaatcg cctcattgtt gttagaaggt gggaggacag     12600
     cgcattcaag gttttctatt ccacttactc cagatgaata tacgtcttgc agaatcaagc     12660
     caaaatctga tcttgctaat ctaattagaa aagcctctct cattatatgg gatgaagcac     12720
     ctgtgatgag caaatggtgt tttgaatcac ttgataagag tttctctgat attattggta     12780
     acaaggataa caaagtgttt ggtggcgcaa ggttgttgtc tttggagatg attttagaca     12840
     agttctccct atgattccca atgcagggag agctgaaatt gtcttggcag ctctaaatgc     12900
     ttcatatatt taggatcatt gtaaggttct aaagctaact aaaaacatgc gcctgctaag     12960
     caaagactta agtgaagaag aagctaaaga catcaaagaa ttttcagatt ggcttctggc     13020
     agttggtgat gggagaatac ctgagccaaa tgacggagaa gaactcattg atattcttga     13080
     agaactattg attacataaa caggaaatcc aatagaagct attagtcatg agatctatgg     13140
     agatccagca atgttaaaag ttaatgaaga tcaaaaattc tttctaaaaa gagttatttt     13200
     atcacctacc aatgatgatg tgcacacaat caatcagtac atgcttaaca atatggaagg     13260
     tcagttgtat gtgagcctag agttttaaat tttcttttaa gacaattaaa ttttaattta     13320
     ttaatttaaa cttgcaggtg aagaaagaat attcctcagt gctgacagta tagatccttc     13380
     agattctgac tcattgaaaa atccagttat cacgcctgat ttgttaaaca gtatcaaact     13440
     atccggtttg ccacaccatg aattacgttt gaagattggt gctccgatta tactacttag     13500
     aaatcttgat cctaaaggcg gtctgtgcaa tggaacaaga cttcagatta ctcaaatgac     13560
     tatacaagtt cttcaagcaa aagttataat tggggacaga agtggagaca ttgttttgat     13620
     tcccttaatt aacattacac catcaaatat gaagctgccc ttccggatgc gtaggagaca     13680
     gttcccagtg tcactagcat tcgctatgac catcaacaag agtcagtgac aatcacttga     13740
     gagagttggt ctctatttac cgaagcccgt tgtttcacat ggccaactat atgttgctct     13800
     gtctagggtc acttcagatt ctagataaag cagggaagat tcaaaagcaa acaacaaatg     13860
     ttgttttcaa agaagttttt cagaatatca tctgaaatct cctcaagaat gattcgtctt     13920
     tcattcttat caaaaggtat gtttcattct ttaatctttt attgattagt tgcttcatgg     13980
     ttggcaaaac ccaaaaaaat caaagttatt cctgacaaaa ctaactgttt gcatctaatg     14040
     aacaaggcaa ttacaagatg gaaaccaaag gatgcaataa tcacagacct aatcaattac     14100
     catttcctct agctaaccat tgtttaaaat tccataataa cacaagaatc aagtagctaa     14160
     tcttacagtt ctacacttcg cattttcatc aattccatgt cttgaattta tcagccatta     14220
     gtcctgcatc aaacagaaac aaatgtccta cttcaataaa ttcaaaactg caaaaatttt     14280
     ccgtgtcttc tcaatcattc atctagcttt cgaattctaa atttcgattc taggtttaat     14340
     tttgaataca attcccgacg tttacagagg catagagtaa gtacagatta aatcaattga     14400
     caatctttga atgaaaccaa tctgactcca aaacttacgc attattttca tgtattttgc     14460
     agattctgtt tttcacaatt ggaacatgta ccacctgtga attccgtgtt tcagtagctc     14520
     tagcatcatc aattgaggat tgaaaaagag tgttagaagc aaaactcagt agaaagagga     14580
     tttcaatcgg atttttgaag gtaacgagag ttgagagaga gtaatttttt ttttccgttt     14640
     tttttttctg ttgacagtta agagagtcat acagtatttg ggcttaaaat attaagtggg     14700
     cttcgatttt agatttgcgc ttcaataaca ttatggttta aacaaaagat gaaattgtat     14760
     tgggctttgt ttattactta gttttcagaa atattatcaa atttataaac atacattgtt     14820
     ttaaattaat tatacaattt agaataatca caatcatgtt taaaaaattt agtaattgag     14880
     tgtattcatt attagacttt atcatataaa aaaaattgaa ttacataaat ccaaataaaa     14940
     atacatgtta gacattacaa cattgcattt catgattaaa ataaatacga atactaattc     15000
     taattaccat tagattacta aaattccaca tacttataca cacaacagaa gctataggtt     15060
     cataaaaaaa attaaaattc gacaaccctt caaaatcata tgcttacaaa aatatacaca     15120
     ttctatcaac taatttgaaa actccgcaaa ataaccaatg ttatcgtaac cttaattacg     15180
     tgtcctttaa ttatacacac agccaaatat ataattgaga agtaaggaaa aatacaacaa     15240
     ccatactaaa cataaactac attgtcaaaa cacaaaacat aaataatttt aaaaaaaaaa     15300
     aaatctcgcg gtgtaccacg ggtcatatcc tag                                  15333
//
ID   ATCOPIA23LTR repbase; DNA   ; ATH   ; 120 BP.
XX
AC   AB010693;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   03-MAY-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA23 LTR-retrotransposon.
XX
KW   LTR; LTR-retrotransposon; COPIA superfamily; ATCOPIA23LTR; ATCOPIA23I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-120
RA   Kapitonov V.V., Jurka J.;
RT   "ATCOPIA23LTR.";
RL   Direct Submission to Repbase Update (00-MAR-1999).
XX
DR   GenBank; AB010693; Positions   43402   43283.
XX
SQ   Sequence 120 BP; 43 A; 17 C; 16 G; 44 T; 0 others;
     tataaggagt tgtatatatt aaggatataa ttgtcattag tagttgtgta taccctagac        60
     taagtactat atatgttgta acacattcat cataataaga caattcactc tcttatcaca       120
//
ID   ATCOPIA43I  repbase; DNA   ; ATH   ; 7963 BP.
XX
AC   .
XX
DT   31-AUG-2000 (Rel. 5.07, Created)
DT   05-SEP-2000 (Rel. 5.08, Last updated, Version 2)
XX
DE   Internal portion of the ATCOPIA43 copia-like endogenous retrovirus - a
DE   consensus sequence.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; LTR-retrotransposon;
KW   COPIA superfamily; endogenous retrovirus; gag-pol; ATCOPIA43LTR;
KW   ATCOPIA43I; envelope.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-7963
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
RN   [2]
RP   1-7963
RA   Kapitonov V.V., Jurka J.;
RT   "ATCOPIA43I.";
RL   Direct Submission to Repbase Update (00-AUG-2000).
XX
CC   [2] (Consensus)
XX
CC   ATCOPIA43I is a consensus sequence of an internal portion
CC   of ATCOPIA43 copia-like endogenous retrovirus. Its long
CC   terminal repeat is deposited as ATCOPIA43LTR. The consensus
CC   sequence was derived from five copies (they represent two
CC   subfamilies) ATCOPIA43I copies are ~98% identical to the
CC   consensus sequence.
CC   This retrovirus is closer to SIRE1 from Glycine max than to
CC   other copia-like endogenous retroviruses present in the
CC   A.thaliana genome. ATCOPIA43I encodes the 1659aa gag-pol
CC   polyprotein (position 144-5123) and the 475aa
CC   envelope-like protein (position 6074-7501).
CC   ENV:
CC   MRSCLLNLAALTEGSFSFSATQTSKFKGFLSLKTQVTMNQEATSLTGVSGAGQPSAATPSDPPPPPVAPM
CC   FIPKTEPGICMSKKTKSKVSAPTQRKRQCTAASAKSRSKAPAPALRRLSSRKSNRSASAAGQTEELVRDS
CC   SDLQDGDVTEIAPPLFLSRYRENRRLLAVRDRKYPELKFPSETPYSSCFLTEEGLGRYKVIGNRCFNDMR
CC   FLPLDGNNTASTQQLLFNAGLLPTVTEIDSYVHEVVMEFYANLPDGEEGDQLAYSVFVRGNMYEFSLAII
CC   NQMFQLPNPSYPLDGMSEIQVPESMDEVAIALSNGKANSWKMLTSRLLSPELALLNKICCHNWSPTVNRS
CC   VLKPERMTLLYMVAKALPFNFGKLIFDEIWACSNAVANPSSTLRLVLPNLIDQMLRFQRIVRSDEGDTTS
CC   SAPLKFTMEVKPVPVLQSDSPTLDAALETLIASLTTMRVRLAGKPLSLNLHSVIF
CC   GAG-POL:
CC   MTQIIRGQGEDAWTAVEEGWEPPFDLTEDGFKITKPKANWTAEEKLQSKFNARAMNAIFNGVDEDEFKLI
CC   QGCKSAKQAWDTLQKSHEGTSSVKRTRLDHIATQFEYLKMEPDETIVKFSSKISALANEAEVMGKTYKDQ
CC   KLVKKLLRCLPPKFAAHKAVMRVAGNTDKISFVDLVGMLKSEEMEADQDKVKPSKNIAFNADQGSEQFQE
CC   IKDGMALLARNFGKALKRVERGQNRDSTSWSNKDGERSRGRFSRSENDDSGKKKEIQCYECGGFGHIKPE
CC   CPVTKRKEMKCLECKGVGHTKFECPNKSKLKEKSLISFSDSESDDEGEELLNFVAFMASSDSSKVMSDTD
CC   SDCDEELNPKDEYRVLYDSWVQLSKDKLQLVKEKLTLEAKLANVSTEDKQKLSGITVDGNSQDYYQKKLD
CC   CLQEECHRERDRAKLLERELNDKHKQIRMLNKGSESLDKILAMGRTDSQPRGLGYQGYTGKINKEEGRVI
CC   NFVSGGSTSETVVRQSYTEPKKQVKSHVETKGESVVRTRMVGVICCDHCGKRFHMREQCYKFKEKVRTLW
CC   NLAKCYIEPSRFCTVWIKKKDLYGDMEAERYNHKLERMYEEEEMHYASCCNQVNKEMQDEANLVCNWNLS
CC   ELDDCTPQAKVAYTSAVSQDNRAWYFDSGCSRHMTGVQSVLNDFSVITNGKVTFGDGGKGSIKGKGKIEI
CC   DDQPHLSNVYFVEGLTANLISISQLCDDDLTVTFTKTGCVALDIAGNNVLSGVCSGNNCYMWKDSEVCLS
CC   AITSKLDLWHQRLGHMNTQSLVKIVNADVVRGIPKLEGSTSVVCKACSQGKQVKVQHKRATHIGTTSVLE
CC   LVHMDLMGPVQTESLSGKKYILVLVDDYSRFTWVRFLREKSEAAESFKILALQLQTEKGNLVQIRSDHGG
CC   EFQNEEFEKFCRIQGIRHQFSAPRTPQQNGVVERKNRTLQEMARAMIHGNNVSPRFWAEAVNTACYIVNR
CC   VYVRPGTSTTPYEIWKGRSPNLCYFHTFGCVCYVLNDKDHLGKFDARSDEGIFLGYATNSMAYRVYNKRL
CC   KRVEESVNVVFDDKHPTRLFTVEQDDDEQVEETRHSTSLVESGTSKDVEQTTEPRTSSSRLTVPKSHSET
CC   DVIGELDGDRVTRGIKMNYRDMILFTCFVSSIEPNNIEIALEDEFWYQACHEELNQFSRHEVWDLVPRPV
CC   HVNVVGTKWIFKNKTDEEGNVTRNRARLVAQGYSQVEGIDFDETFAPVARLESIRLLLGISCLLKIKLFQ
CC   MDVKSAFLNGVIQEEVFVSQPKGFEDSNFPDHVYKLKKALYGLKQAPRAWYERLTLFLIEKGFKRGSVDK
CC   TLFILVDEKDILIVQIYVDDIVFGSTKQKLVSDFVESMTKEFEMSMVGEMNYFLGLQIKQTDEGVHISQS
CC   TYAKGLIQRFGMQTAKTSKTPMSATAKLSADEAGLSVDEKLYRGMIGSLLYLTASRPDLCFSVGVCARYQ
CC   ANPKQSHLNAVKRILKYVKGTTDVGLFYSKQTNQNLVGFCDADWAGNLDDRRSTTGGCFFLGNNLVSWHS
CC   KKQSCVSLSTAEAEYIALGSCCTQLLWMKQMLLDYGMTSNTLLVYCDNMSAINISKNPVQHSRTKHIDIR
CC   HHFIRELVENKIVEISHVSSEKQLADIFTKPLDLNSFLNLKKSIGLSEY.
XX
SQ   Sequence 7963 BP; 2317 A; 1465 C; 1896 G; 2285 T; 0 others;
     attggtatca gagcgggtaa ccaatctgag attagtatat ctgaacaggt tagatcctag        60
     ttatggaacc aacggatgtt agtactggta caggcaaggt attactgcta gatactaagc       120
     ggtatggata ctggaaagtt cgtatgacac aaatcattag aggccaaggt gaagatgctt       180
     ggactgcagt agaggaagga tgggaacctc cgttcgatct aacagaagat gggttcaaaa       240
     tcactaaacc aaaggcgaat tggactgcag aagagaagct tcaatcaaag tttaatgcaa       300
     gggctatgaa tgctatcttc aatggtgttg atgaagacga gtttaagctt attcaagggt       360
     gcaagtcagc gaaacaagca tgggatacgt tacaaaaatc tcatgaggga acttcgagtg       420
     taaagagaac aagactggat cacattgcta ctcagtttga gtatctcaag atggaaccag       480
     atgaaacaat tgtgaagttc agttcaaaga taagtgctct tgcgaatgag gctgaggtca       540
     tgggaaagac ctacaaagat caaaaattgg ttaagaagct gttacgttgt ctgccaccga       600
     agtttgctgc ccacaaagca gttatgaggg ttgcagggaa tactgataaa atatcatttg       660
     ttgatcttgt gggaatgctc aagtcagaag aaatggaagc tgatcaagac aaagtcaaac       720
     cgtcgaagaa tattgcattt aatgcagatc aaggctctga gcagtttcag gagattaagg       780
     atggaatggc actgctagca aggaattttg ggaaagctct gaaacgtgtg gaaagaggtc       840
     agaatcgtga cagtacatcc tggagcaata aagatggaga gagatcacgt ggaagattct       900
     ccagatctga gaatgatgac tcaggaaaga agaaggaaat tcaatgctat gagtgtggtg       960
     gttttggtca cattaaaccg gagtgtccag tcaccaagag aaaagaaatg aaatgtcttg      1020
     aatgcaaagg tgtgggtcac actaagtttg aatgtcccaa caagagcaaa cttaaagaga      1080
     aatctcttat aagtttcagt gattcagaat ctgatgatga aggtgaagag ctgttaaact      1140
     tcgtggcgtt tatggcaagt tctgactcaa gcaaggttat gagtgacacg gattctgact      1200
     gcgatgagga actgaatccc aaggatgaat acagagtgct atatgacagc tgggtgcaac      1260
     taagtaagga caagctgcag ttggtaaagg aaaagctaac tctagaagca aaacttgcta      1320
     atgtgagcac agaggataag cagaaactga gtggaatcac tgttgatgga aattcacagg      1380
     actactatca aaagaaactt gactgtcttc aggaagagtg tcacagggaa agagatagag      1440
     ctaaacttct ggaaagagag ttgaatgaca aacacaaaca gatcaggatg ctcaacaaag      1500
     ggtcagaaag tctagacaag atcttggcaa tgggcagaac tgattctcaa ccaaggggtt      1560
     tgggttatca aggttataca ggaaagatca acaaggaaga aggaagagtc atcaactttg      1620
     tcagtggtgg ttcaacaagt gaaaccgtgg tgagacaaag ctatactgaa ccgaagaaac      1680
     aagtgaagtc acatgttgaa acaaaaggag aatctgttgt gagaacaagg atggtgggtg      1740
     tgatttgctg cgatcattgt ggtaagagat ttcatatgag agaacagtgt tacaaattca      1800
     aagagaaagt cagaacgctg tggaatttag caaagtgcta cattgagcca tcaagattct      1860
     gcactgtgtg gattaagaag aaagatctgt atggtgatat ggaagctgaa aggtacaatc      1920
     acaagttaga aagaatgtac gaagaagagg aaatgcatta cgccagttgc tgcaatcagg      1980
     tcaacaaaga aatgcaagac gaggcaaatc ttgtttgcaa ctggaatctt tctgagttgg      2040
     atgactgcac tccacaagcc aaagtggctt atacttcagc tgtttctcaa gacaacagag      2100
     cgtggtattt cgacagtggg tgttctcgtc atatgaccgg tgtacaatct gttctaaatg      2160
     acttttctgt catcaccaat gggaaggtca cttttggaga tggtggaaaa ggaagcatta      2220
     aaggaaaagg gaagatcgag atagatgatc aaccgcatct gtcaaatgtg tactttgttg      2280
     agggactcac tgctaatcta ataagcatca gtcaactgtg tgatgatgac ttaactgtta      2340
     cgtttacaaa gactggatgt gttgcactcg atattgctgg caacaatgtt ctatcaggag      2400
     tttgttcagg caacaactgc tacatgtgga aagactctga agtctgtttg tctgcaatca      2460
     catccaagct tgatctgtgg catcaacgac ttggacacat gaatactcaa agcttggtca      2520
     agattgtgaa tgctgatgtt gtcagaggaa ttccaaaact tgaaggcagt acaagtgttg      2580
     tctgcaaagc ttgcagccaa ggcaaacaag ttaaagtgca acataagagg gccacgcata      2640
     ttggaactac tagtgttctt gaattggtac acatggatct tatggggcca gttcagacag      2700
     aaagcttgag tggtaagaag tatattttgg ttctggttga tgactactct cggttcacat      2760
     gggtgagatt tctaagagaa aaatctgagg cagctgaaag tttcaagatt ctggctttac      2820
     aacttcagac tgagaaaggg aatcttgttc aaatcagaag tgatcatggt ggagagtttc      2880
     aaaatgaaga atttgagaaa ttctgcagaa ttcaaggaat cagacatcaa ttctctgcac      2940
     ctagaacacc acaacagaat ggtgttgttg agagaaagaa cagaacttta caagaaatgg      3000
     ctagagctat gattcatgga aacaatgtgt caccaagatt ctgggctgaa gctgtcaaca      3060
     ctgcttgcta catcgtgaat agggtgtacg taagacctgg gacaagcaca actccttatg      3120
     agatatggaa gggaaggtca ccaaatctgt gctacttcca tacttttggt tgtgtgtgct      3180
     atgttctgaa cgataaggat catcttggaa agtttgatgc aagaagtgat gaagggatat      3240
     ttctgggtta tgccacaaac agtatggcgt acagagtcta caataagaga ttgaagagag      3300
     ttgaagaatc agttaatgtt gtgtttgatg acaagcatcc tacaagactc ttcacggtgg      3360
     aacaagatga tgatgagcaa gtagaggaaa caagacattc aacatctctt gttgaatctg      3420
     gaacttcaaa agatgttgaa cagactactg aaccacgtac atcatcatct cgcctcacag      3480
     ttcccaaaag tcactcagaa actgacgtta ttggagagtt ggatggagac agagttacca      3540
     gggggataaa gatgaactac agagatatga ttctgtttac ctgttttgtg tcaagcattg      3600
     agcctaacaa cattgaaatt gccttagaag atgaattctg gtaccaagct tgccatgaag      3660
     aactaaatca gttcagtcgt catgaagtat gggatttagt tccaagaccg gttcatgtca      3720
     atgtggttgg tactaaatgg atttttaaga ataaaactga tgaagaaggc aatgtgacac      3780
     gtaacagagc tcgactggtt gctcagggat actctcaggt tgaaggaatt gattttgatg      3840
     agacttttgc tccagtagct cggctggaat ctattcgtct tcttcttgga atatcgtgct      3900
     tgctgaaaat caaactgttt cagatggatg tcaagagtgc ttttctgaat ggagttattc      3960
     aagaagaagt gtttgtgtct caacctaaag gctttgaaga ttcaaacttt ccagatcatg      4020
     tgtacaagct taaaaaggct ctttatgggt tgaagcaagc acccagggct tggtatgagc      4080
     gtctcactct gttcctaata gaaaaaggtt tcaaacgtgg aagtgtggac aagactttgt      4140
     tcatccttgt tgatgaaaag gacatcctca ttgtgcaaat ttatgtggat gatattgtgt      4200
     ttggaagcac aaaacagaaa cttgtctctg actttgtgga atccatgacc aaagagtttg      4260
     agatgagcat ggttggagag atgaactact tcctgggtct acagatcaaa cagactgatg      4320
     aaggagttca tatctctcag tctacgtatg ccaaagggtt gattcagaga tttgggatgc      4380
     agacagctaa gacctcaaaa actcccatga gtgctactgc taaactgtct gcagatgaag      4440
     ctggtctgag tgttgatgag aagctgtatc gtggaatgat tgggagtctt ctgtacttaa      4500
     cagcaagtag accagatctg tgtttcagtg tgggtgtgtg tgcccgttat caggctaatc      4560
     caaagcagtc tcatctgaat gctgtgaaac ggattctcaa atatgttaaa ggtacaaccg      4620
     atgttggtct gttttactct aaacaaacta atcaaaatct tgttggattc tgtgatgctg      4680
     attgggcagg aaacctggat gatcgaagaa gcacaacagg agggtgtttc tttttgggaa      4740
     acaacttagt ttcatggcac agcaagaaac aaagctgtgt atccttgtcc actgcagaag      4800
     ctgagtacat tgcactaggg agctgctgta ctcagttgct atggatgaaa cagatgcttc      4860
     tggattacgg tatgacatct aacaccctgc ttgtgtactg tgataatatg agtgcaatta      4920
     acatatcaaa gaatcctgtg caacactctc gaacgaagca tattgacatc agacaccatt      4980
     tcattcgtga gcttgttgaa aacaagattg ttgagatctc tcatgtttcc tctgaaaaac      5040
     agttagctga tatatttaca aaaccattgg atttgaacag tttcttgaat ctgaaaaaat      5100
     ctattggtct gagtgaatac taatgtgtct tggtgttaaa gctattgcaa taggttcctt      5160
     tgtacagagt tgcattagct ttgtgttttc atcaatatgt atatatatat atctattgtg      5220
     tctgtctttc tggcacttca tttcaggaaa atagctgctc ttcatgctct tcctcaatga      5280
     agtttccaaa aaggatgtgt gtgtggtgtg taataataat aaaaaaaaag gcaaaaagaa      5340
     aaaaaaaaag gcctgaagga atgaacaaat gaaagttcaa aaaaaaaaaa aaacaaaggt      5400
     tgtgtgttgg caggaaaggg attggtattc tttcttctct tggggtatat atgtatctat      5460
     gagtaccccc tcaaaacatt gttcttcatt acaggctcta ccaatccccc tcgccgtgtt      5520
     acccacacac atcatgaggt tgcttctttg gagagtatga cgagtgtaga ctatcctgtc      5580
     ttgatcagtg tgtatggttc atctcactgg gccaggaagc tgctattttc tccatactaa      5640
     aagtaagcta tgcacctctg tactttggaa tctgtccttc tcgcttggat gcatttcgca      5700
     tgtgggttcc ttgcctagta gaagtttctt taagctatat agtatatatg tctatatctt      5760
     aagattatgc tatgttttat ctttcagagg atgacttgat gagatctcac attcagtttg      5820
     aatcacagtt cttgaatgac agtggctgtt aatttcaagt gttgatttgg ttgaatttgt      5880
     ggttctatat ggtttagtcc tactttatgt tgcaatcata ttatgtacat atgttggctg      5940
     tctactacgt ctctgggttt ctgttgtgat ttgtttttgg gcctggtata aggccctgtc      6000
     gattgtttaa cggatctggt ttagtgtttt gcagcctgtc ttggttttcg tgctgttttt      6060
     agggtttccc ttgatgcgct cgtgcctttt aaacctagca gctctcacag aaggctcatt      6120
     ctccttctct gctactcaaa cctcaaaatt caaagggttt ctttctctaa aaacacaagt      6180
     caccatgaat caagaagcga cctcgttgac tggagtctct ggtgctggtc agccttccgc      6240
     tgcgactcct tctgaccctc caccgcctcc ggttgctcca atgttcattc ccaagactga      6300
     accaggcatc tgcatgtcta agaaaaccaa gtccaaggtc tctgctccga ctcagcgcaa      6360
     gagacagtgt acggctgcat ctgccaagtc cagatctaaa gcgcctgctc ctgctctccg      6420
     acgtctgtca agcaggaaat ccaaccgatc tgcctctgct gctggacaaa ctgaagaact      6480
     tgtccgtgac tcttcagatc tgcaagatgg tgatgtcacc gagattgctc cgcctctctt      6540
     tctgtctcgt taccgagaga accgtcggct tcttgctgtt cgtgatcgta agtatccgga      6600
     gctcaaattc ccatcggaga ctccctacag tagctgtttt ctgactgagg aaggtcttgg      6660
     gcgctacaag gtcatcggga atcgctgctt caacgacatg cgtttccttc ctctggatgg      6720
     aaacaacact gcgagtactc agcaacttct cttcaatgct ggtctgcttc ctactgtcac      6780
     cgaaattgac tcttatgtgc atgaggttgt catggagttc tatgcaaacc ttcccgatgg      6840
     tgaagaaggt gatcaacttg cctactccgt gttcgtcaga ggcaacatgt atgaattctc      6900
     cctggctatc atcaatcaaa tgtttcagct tcctaatcct tcctatccgc tggatggtat      6960
     gtctgagatt caagttcctg agtccatgga tgaagttgcg attgctctgt caaacggcaa      7020
     agccaactcc tggaagatgc tcacttctcg gctgttatct cctgagctag ctctgctcaa      7080
     caagatctgc tgtcacaatt ggagtcccac tgtgaaccgc tctgttctga agccggagag      7140
     gatgactctg ctttacatgg tggccaaagc tctaccgttc aacttcggca aactcatctt      7200
     tgatgaaatc tgggcgtgtt cgaatgcagt tgcgaacccc tcctctactc tccgacttgt      7260
     gcttccgaac ctgattgatc aaatgctgcg ctttcagcgc attgtccgct ctgatgaagg      7320
     agataccact tcgtctgcac cgttgaagtt caccatggaa gtgaaacctg ttcctgtgct      7380
     acagtctgac agtccaacct tggatgcagc tctggagacc ctcattgcat ctctcacaac      7440
     gatgcgtgtt cgtctggcag gtaagcctct ctcactcaac ttacactctg ttatcttttg      7500
     agaatggttt tttatatgag tgtgcactca agcaggggga gagtattctg atgtgtcgta      7560
     ctctgttccg gatgatgtgg gagatgagaa tgtggaggaa gaggacgatg atgatgagtt      7620
     agatgacaac acttaattgc ttagtcctgg tcgtttttta gttgtgcatt gtgttagggg      7680
     gagtttgtcc ctgattgttt ttgtgtgttt gtgaaaactc cttgatcttg ttctttatcg      7740
     gcttcttatc ggatcttctg tgtgtttaat gattggtctt atgtatggaa ccaagaactc      7800
     atttctgttt catgtttaaa tggttatgtc ttttggcagt agttgcttaa acttgagcct      7860
     ttggtttcta tgtttggtat ggaatattgc ttggcttgta tgtgtggtct ctactctttt      7920
     gcagattact tgaggtgtca cactcagata aaaaggggga gat                        7963
//
ID   VANDAL14    repbase; DNA   ; ATH   ; 12268 BP.
XX
AC   .
XX
DT   22-MAR-2000 (Rel. 5.02, Created)
DT   20-MAY-2005 (Rel. 5.02, Last updated, Version 2)
XX
DE   Autonomous DNA transposon VANDAL14 - a consensus.
XX
KW   MuDR; DNA transposon; Interspersed Repeat; Autonomous DNA transposon;
KW   protease; MuDR-like transposase; VANDAL superfamily; VANDAL14.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-12268
RA   Kapitonov V.V., Jurka J.;
RT   "VANDAL14.";
RL   Direct Submission to Repbase Update (00-MAR-2000).
XX
CC   [1] (Consensus)
XX
CC   VANDAL14 is an autonomous DNA transposon. It generates
CC   9 bp duplications of AT-rich target sites upon integration
CC   of its copies in the genome.
CC   There are 5 copies of VANDAL14, 100% identical to each other,
CC   we found in chromosomes I,III,IV and V. These copies are
CC   flanked by 9 bp duplications of different target sites.
CC   VANDAL14 encodes three putative proteins.
XX
FT   CDS           join(8021..7923,7825..7217)
FT                 /product="VANDAL14_2p"
FT                 /note="protease"
FT                 /translation="MAVIRDIDFGACRTLSAIELREIVEFKTVVPKMVMD
FT                 IFINSIRINWCANNIIEKHQAVSFIDSTFVVELSKHYPKFVKSADKGMYG
FT                 FDHDLLECTPTGSAVVYIPFLIDLQHWVGLCVDMSARIISVLDCYTGLWR
FT                 ETKLKKVLLPLAEMLPYLFRFAIKMAGEKKLRLKSLAVHRENDIPQADSV
FT                 KYSGVMAARLIEAHANGGIQACKEVKHADVVTAANKYFIAGFELANGIV*
FT                 "
XX
FT   CDS           join(1864..2529,2604..2913,3349..4229,4358..5167,
FT                 5247..5327)
FT                 /product="VANDAL14_1p"
FT                 /note="VANDAL-like DNA transposase"
FT                 /translation="MVVITEITDDRYVRTVSGSWAIGADGTWLFISNHNN
FT                 AVRRLSIGEGEKLASVRQLVREAYGQEYVEGPLHLTYQWPDWMDMETTFG
FT                 GRTKPVSITSEETMGVFLAMRFELEDLSLFVSKQTVDDGSEDGGTSQTSS
FT                 YGFADKGKSPLYVNAERSPNYESVVWKRLMDDEAVLRWMRSTETEGQNVG
FT                 DSSTNVQQHPVRPAVEAASPMLTTESMDTATEDGDQEEDSTVVEADLLKN
FT                 LGLPSINLATESYDSLSEGEAYNDENDYPGGETIKECNFFGPSATNLVEP
FT                 LGVHLDLAVPLHEALEDMCLNFASFNRDAAPTLDEQGEEGRVGMELAIRD
FT                 VVYEGDELFVGRVFKNKQDCNVKLAVHALNRRFHFRRDRSCKKLMTLTCI
FT                 SETCPWRVYIVKLEDSDNYQIRSANLEHTCTVEERSNYHRAATTRVIGSI
FT                 IQSKYAGNSRGPRAIDLQRILLTDYSVRISYWKAWKSREIAMDSAQGSAA
FT                 NSFTLLPAYLHVLREANPGSIVDLKTEVDGKGNHRFKYMFLAFAASIQGF
FT                 SCMKRVIVIDGAHLKGKYGGCLLTASGQDANFQVFPIAFGVVDSENDDAW
FT                 EWFFRVLSTAIPDGDNLTFVSDRHSSIYTGLRRVYPKAKHGACIVHLQRN
FT                 IATSYKKKHLLFHVSRAARAFRICEFHTYFNEVIRLDPACARYLESVGFC
FT                 HWTRAYFLGERYNVMTSNVAESLNAVLKEARELPIISLLEFIRTTLISWF
FT                 AMRREAARTEASPLPPKMREVVHRNFEKSVRFAVHRLDRYDYEIREEGAS
FT                 VYHVKLMERTCSCRAFDLLHLPCPHAIAAAVAEGVPIQGLMAPEYSVESW
FT                 RMSYLGTIKPVPEVGDVFALPEPIASLRLFPPATRRPSGRPKKKRITSRG
FT                 EFTCPQRQVTRCSRCTGAGHNRATCKMPI*"
XX
FT   CDS           join(11628..10801,10235..9570,9488..8961,8879..8766,
FT                 8687..8598)
FT                 /product="VANDAL14_3p"
FT                 /note="putative protein"
FT                 /translation="ANLSQMPMISEPSLPAPTNDIVDPDGKVA*IESDLT
FT                 AQCKSTPGPMVDDGASDKDGEGLADPPATADNKRKRGNNGPTAATILTPA
FT                 VDNSSAEKSVSADKHVSPEAVNINKVGGVVTDTTEDESARDGIHDIGSST
FT                 LPAKELDDMFAEKSVSGDKTVSHQDNILVDAPGDGIGGEGLDDIQTSPDK
FT                 PIPAAASHTQCLLPPPTDVNEFFESEPSLPDPYVVLVDMDGVAYNVGQPE
FT                 LQYTIPCIIKVVSIWSGTPTGDAFKSGWVEDEEDLSVDYMLQLIKEEHIF
FT                 KGSMFSGGVVPDSLPDERNDNSDVCSTYDCVDEDTIQPDASLPGSSKPRK
FT                 TKGQVHIPDSIKNYIDMKDKRMESRMLKAIADSEARLSSLLRESHGRKNK
FT                 RHSGPKSRDVGEGLGGKKGSSLVVLDNGRVAQSKENSGSGFIDQVLGEVM
FT                 HDINDAEPTQTTTPIGRLSPPTRPGLRSSLFRSGSEPNGERVQSYSELSL
FT                 IDDIANALDAEDMKILRESQFGKLFDFSESAAYSGKLIHFLLTRQLVVRK
FT                 KQEIWVIFSGSPVRFSISEFQNVTGLNCDKPPRMKERKGKRKLAPGKYWY
FT                 SLFDRSDVSVEWVVGRLKKRVVQDQGIRLRYAVLALIDGVLCPTSGRSKI
FT                 SPVHADMAENLDMFLNFPWGTMSFLMTLKSVTARGADKLMRKSITVQGFP
FT                 HALQLLLLQSVPRIRELQFPEAVEDSDSEMEETDTEIERLWSLKLDLVWK
FT                 VDRQSQ"
XX
SQ   Sequence 12268 BP; 3894 A; 2439 C; 2449 G; 3486 T; 0 others;
     gggttaattt actgaatgac caaatttgac atccttatta agagaatgac cttctcccag        60
     aaaagttggg tatataacgt ttttttacca tgcgaaatat ccgatatagc ctctacggat       120
     gggcggcaaa accatattcc cgacagcaga cttgtagatg taggggagct agagattgta       180
     gggcaatgat tacaacgtat caaaaaaaaa aagcatgcat tacttatgca gttactacta       240
     aataaagcat gaactattta tgagtgtaga tctcaattta gagctttcat tactacaact       300
     ttctaagttt gtactgaacg tttcataaaa tacatgcaat ttacaactgc agcagcatgt       360
     actatgaaag gatttatttc attttttttt taaaaaaata atcattaaaa aacaaaaaaa       420
     ttagtattga aatggagtat ataccacgat attgggctgg taactttttc gggtgagtat       480
     tgtactggat tgattattca acaaggtgaa tgggctttta ccttgaatct atgaccagca       540
     gaagtactac gatttggtaa acagcacaag tactacggaa acaacatgtg atgttttaaa       600
     atcacaataa tcatatcgga gcaacttgga aagaaaacat aagagaaaat tattagaaaa       660
     attcccggat gtgacaataa aaagcgcgag caaagagaga tggagatacg tatcagacgc       720
     atttaatgcg gcgtcagagg atatacagct tccaacgtaa tatattgttg tatgtgtaaa       780
     cccttttctt tagtgtagca ctttttaaca caaggtttgt gtgcttatgc tatacgctac       840
     aaaatggcag gtcgataagt tgacacgttg gtcaatgacg tcaagattac gaataggcaa       900
     gtgggggcag aagatatact gaatctatac ctcggttcac ggaaatgtgt aaagcaaaga       960
     ctaagtaaat cacatggtta ttttgacgat aacatgcaat acaaataaag aacacttaac      1020
     acttcgattt gacattggtt aattgtgtaa agcaaggttt gtgtgcttat gctatacgct      1080
     acagaatggc aggtcgttaa gttgacacgt tggtcaatga cgtcaagatt acgaataggc      1140
     aagtgggggc agaagatata ctacctcggt tcacgaaaat gtgtaaagca aagactaagt      1200
     aaatcacctg gttattttga cgataacatg caatacaaat aaagaacact taacacttcg      1260
     atttgacatt ggttaattgt gtaaagcaag gtttgtgtgc ttatgctata cgctacagaa      1320
     tggcaggtcg ttaagttgac acgttggtca atgacgtcaa gattacgaat aggcaagtgg      1380
     gggcagaaga tatactacct cggttcacga aaatgtgtaa agcaaagact aagtaaatca      1440
     cctggttatt ttgacgataa catgcaatac aaataaagaa cgcttaccac ttcgatttga      1500
     cattcgtgaa ttgtcgcttc acgcctccct cgggtgttgg gagggaaatc ataccgtttt      1560
     gaaattcgcg tggctgcaaa tggttaagca actgttacta gaaatatctt tagttactgt      1620
     agccctaaaa aacaaagtta accttttcta taaaagaaga aagatggcaa gatatcatct      1680
     ctcacacctc tacttcttcc tataaagcac acactacgta tccaacaaca tcgaagaact      1740
     cgatcatttc tgttttggta tgcaattaat gaatgttctt ttggtcgggt ttgttgctat      1800
     ttttaaaaaa ctcatggttg atttatctct atttaatgca actctattaa tgtgtaggta      1860
     ccgatggtgg ttataaccga aataaccgac gatcgttatg tcaggacggt gagtggctcc      1920
     tgggcaatcg gagctgatgg aacatggtta ttcatatcca atcacaataa tgcagtgagg      1980
     aggttgagca ttggggaagg ggagaagtta gcatctgtgc gccagcttgt tagagaagcg      2040
     tacggacagg aatacgttga aggcccacta cacctgactt accaatggcc tgattggatg      2100
     gacatggaaa ctacctttgg tgggcgcacg aagccagtaa gcataacttc agaggagaca      2160
     atgggagtgt ttctagctat gcgttttgag ttggaggact tgagtttgtt tgtctccaag      2220
     caaacggtgg atgatggttc cgaagatggt ggaacaagtc agacttcaag ttacggattt      2280
     gcagataaag gcaaatcacc tttatacgtc aacgctgaac gatcacctaa ctacgagtcc      2340
     gttgtgtgga aaaggcttat ggatgacgag gcggtcctcc gctggatgcg ttcaacggaa      2400
     acagaaggtc aaaacgttgg agactcttct accaacgtac aacaacaccc tgtgagacca      2460
     gctgttgagg cagcttcccc gatgttaacg actgaaagta tggacacagc gactgaagat      2520
     ggagatcagg taaaatattc tgcgtttatt aaattcagcc actcgaatat accattacag      2580
     tactaagaca tctatttacg caggaagaag actcaactgt tgttgaggca gatttactta      2640
     aaaatctggg gttaccgtca attaatttag ccactgaatc ttacgactct ctcagtgaag      2700
     gggaagcgta caacgacgaa aacgactatc ccgggggcga gacaattaag gagtgcaatt      2760
     tttttgggcc ttccgcaact aacttggtgg aacctctagg tgtacacttg gatctcgcgg      2820
     tacctctgca tgaggctctt gaagacatgt gccttaactt cgcatctttc aacagggatg      2880
     cagcgccaac cctagacgaa caaggggaag aaggtaccaa ttacatagca tgttgttttt      2940
     aagaacaaca catattgcaa gagtgttcta ataataaccg tcatatagag taacatgtta      3000
     ttcgtataaa taccatgcaa taaaaattta atttcgctga attcctgatt agtcgtacga      3060
     atacaatctt aatatccaca tcatatttgt ttagtttaaa taacaaattg tatttaatat      3120
     catgtaatat aatgatatgc ttacaaacca acacatggtt tcaatttacg ttgatatccc      3180
     tgagatatcc ctaatcaaaa tatagagtaa catgctttaa tattgaacat catgggatat      3240
     agatattatg ttggtcaaag tgttactatt tagtcataca aatacatgct ttctacattc      3300
     acaacatgtg tacagtgtaa ataacacacg aactttattg ttgtgtaggc cgcgtcggaa      3360
     tggaattagc aattcgggat gtggtctacg aaggtgatga actgtttgtt ggccgggtat      3420
     tcaaaaataa acaggattgc aatgtcaaat tagcagttca cgcacttaat agacggttcc      3480
     atttccgtcg tgatcgttcc tgcaagaaac taatgacttt aacctgcatt tctgaaacat      3540
     gcccttggcg tgtatacatc gtcaagctgg aggattctga caattaccaa attcgaagtg      3600
     ctaatctcga gcacacttgc actgtagaag aaaggagtaa ttaccacaga gcagcaacaa      3660
     cgcgggtcat aggcagcata attcagtcta aatatgcggg caacagtcgg gggccaaggg      3720
     ctattgacct tcaacgcatc ctattgaccg attactcagt tagaatttcc tattggaagg      3780
     catggaaatc aagagaaatt gcgatggata gtgcacaagg atcagctgcg aatagtttca      3840
     ctctgttgcc agcctaccta catgtgctgc gcgaggctaa tccaggttca attgttgatc      3900
     taaagacaga ggttgatgga aagggtaatc accggtttaa gtacatgttc ttagcattcg      3960
     ccgcatcgat tcaaggtttc tcttgcatga aacgagtcat tgttattgac ggtgcccacc      4020
     tgaaaggcaa atacggtgga tgcctcctaa ccgccagcgg ccaagacgct aatttccagg      4080
     tttttcccat agcgtttggc gtggtcgata gcgaaaacga tgacgcatgg gaatggtttt      4140
     tccgtgtttt gagcaccgct ataccggatg gagataacct gaccttcgtc tcagacagac      4200
     attcctccat ttataccggt cttcgaaggg taatccttaa aattgataat tttaaatgtt      4260
     acatgttata tacagcatat ggctcttatt tattttagaa cacatgctat ctaccaatat      4320
     gccctgctat atacgtataa cacatgttaa catgcaggtc tacccaaagg ctaagcacgg      4380
     ggcatgtatt gttcatctgc aacgaaacat agcgacctca tataagaaga aacacttgct      4440
     gttccacgtg tcaagagctg cgagggcttt ccggatctgt gaatttcata catatttcaa      4500
     tgaggtgata agactagatc cggcttgcgc acgatacttg gaatctgttg gtttttgcca      4560
     ttggacacgc gcttatttcc ttggggaaag atacaacgtc atgactagca atgtggcgga      4620
     gtctttgaac gcagtcttga aagaagcccg tgaactacca atcatttcct tgttagagtt      4680
     cattcggacc acattaattt cctggtttgc tatgaggcgt gaggcagcta gaaccgaagc      4740
     atcgcctcta ccaccaaaga tgagagaagt tgttcatcgt aactttgaaa aatcagtccg      4800
     atttgcggtt catcgccttg acaggtacga ttacgagata agggaggaag gcgcaagtgt      4860
     ctaccacgtg aagcttatgg aacgcacatg ctcctgtaga gcatttgatt tgcttcactt      4920
     gccttgcccc cacgcaatag cggctgcagt ggctgaaggc gttccaatac aaggactgat      4980
     ggcgccggaa tattctgttg aaagctggag aatgtcttac ctaggtacca taaaacctgt      5040
     acccgaggtt ggtgacgttt tcgctttacc tgaaccaata gcctctctcc gcctcttccc      5100
     gccagccacg cgccgtccat cgggacggcc gaaaaagaaa agaattactt caagggggga      5160
     attcacggta aacgttatac atttggaatt tactgtaaca cccttagtgt tttaaattcc      5220
     taacaattgc tcaatcttca tctcagtgtc cccagcgaca agtaacacgt tgttctcgtt      5280
     gcacaggcgc cggccataat cgcgccacgt gcaaaatgcc catataaagg tacaatgtta      5340
     ttttataccg tatcatgcta tagatagaaa caacgttcat acaattttta taatatcatc      5400
     tgcagggggt gttgtgtctc gcgtcttctt catgagttat atgttgtgtt atataagcaa      5460
     ggggaagtcc atcacatatg gatattatgt aaaaggaagg gtcacttggt ataatgtaca      5520
     tattagcaat tagatgtggc aattagggtg gcaactaaaa gctacgttga gaatgcaatc      5580
     aagggacccc aattccagta agtgccgtat agaagaccac cttctacgga caaaggataa      5640
     tgttctgttt tttggctttt gtgtagaaaa aaactttatg ttcccccttt tgtaaacaga      5700
     ctcatgatat taagtaaaga cgcgagtgtt taattattaa tacgtggtgt aatgtaaaat      5760
     tcagatccac agacaagggg ttaaatgagg aaatatatga aacaaatata acgaatagat      5820
     atagcaccat tactggcaaa ttaaagtcca taaaaatgtt cagccatcat gaactgacat      5880
     tttatgtcaa ggattccaac aagatgaaat cattccaacc ataaatcaaa ataagatgct      5940
     attcgagaaa accacatgtg atgtttagca attgcgtgag gtaaaaccgg gcaccgagag      6000
     ttgaacagtt ccacatagga ttccttatgc cacttcgact attttctcag aacccaataa      6060
     gtgcttctgc accacacatt tcacccccca actacgccac ataaatgagt gaatatatac      6120
     actaacaata ttggactata tatacatatt ggctatcaac atctccgtca ataataaaac      6180
     gtccttcggc ctacttacac atgcttgcaa gggtagaaat gagacagtat cgtcagaatc      6240
     cagtactcat gcgggtgggt gggctgttca gaaaacaatt tgacgacgca ttggaggcaa      6300
     ataacccgga agcacattat cttgaagggc taaggtatgc ttgttgggag aaagatttag      6360
     tcatggcaaa aaaacacatt tttaaagctg taaacaaggt agatgaggcg ctgtttgtta      6420
     tggctatgtt gtctatttgt ggtggtgaga aggagctagg tgaatttttc actgaacaac      6480
     tgtttgccct accttgggcc gaagtattag ctatgggtga ttctttattt tcagctcttg      6540
     aacgaatggc tgtgcgccat ggtacagctt acaagcttac atggaatggg gcccatcctc      6600
     catgtgtatc aatccacaac atatataata gatgcgaaga gtgctacatt ttcttttgtt      6660
     caaaagaatt ctgtcggcga tgttagatgg tacaagctgc acccaacgtg gaaatctcgt      6720
     aaccagaagg gaagcatcct ttaaaataat atgctgttat tttatattaa cccgcgtagc      6780
     atctataaat cacattctgt ttgtaaaaag tacatgtttt atgtctaatg tgttagtcgt      6840
     tatgataatg gtgtcaaata acgatattac attaaaatgg cgtgatatgt acctatatta      6900
     catgttttat attgactttt tgatcatgtt aatctgtcta aggtgtataa tccaaaatat      6960
     ttttaaacgg gtcattatta ttgcaaagtt tacaaccggg taagtcctaa atatcaacta      7020
     agccacagtt agaatgcatc tatatttaaa cgaatcatga ggtaaatata aaacgcacgg      7080
     tacatattag aattgcagtg acatatgttt actacacaaa acaggtgcat agaaagaaca      7140
     ttaggtactc aactgttagg tgtctaatat attacagagt caggtaatag aaggtaaaca      7200
     cactagaaca tttgggtcag acaatcccat tagctaattc aaaaccggca atgaaatatt      7260
     tgttagcagc agtcaccaca tcagcatgct tcacttcttt gcaagcctga atcccaccat      7320
     tggcatgggc ttcaattaaa cgagctgcca tgactccaga atattttaca gaatctgcct      7380
     gtggaatatc attttctctg tgaaccgcaa gagatttcaa acgaagtttc ttttccccag      7440
     ccattttaat agcaaatcga aatagatatg gtaacatttc agcaaggggc aaaagcactt      7500
     tcttcaattt tgtttcacgc cataatcctg tatagcagtc gaggacgcta atgatccttg      7560
     cactcatatc aacacaaagc cctacccaat gctgtaaatc aatgagaaat ggaatgtaga      7620
     ccacagcaga acctgtaggg gtacattcaa gtaggtcgtg atcaaaccca tacattccct      7680
     tatcagcaga cttgacgaat tttgggtaat gcttggataa ttcaaccaca aatgttgaat      7740
     caatgaatga aacggcttgg tgcttttcaa tgatattatt tgcacaccag ttaatcctta      7800
     tgctattaat gaagatgtcc ataacctgta aatagagtag aacgcatatt aggtgtttaa      7860
     ggcaaaccct atgtttatag agcactatgt aatctttttt acccacatga tatttatcat      7920
     accattttgg gtacaacggt cttgaactca acaatctcac gcaactcaat ggcggaaagt      7980
     gttcgacaag ccccaaaatc aatgtcccta ataacagcca tatgcataag ttttaagtaa      8040
     tatgagtcaa acaaaataaa atagcataag gttggaatta atacccagac atgccatata      8100
     agcgatttat cttgttctta cggctaacat catgcccaaa agtaacagac ctaccgcttg      8160
     tggaagaggc tattacggat tcatgttgga gctgtgagca acgtaaacgt gattagaaaa      8220
     tcagatgtta tcttaataat caggaaatta gagtttgcat aatcctaaac attctgtgtt      8280
     aaacttaatg gcatgtaatt tgttctaaaa ccttgatgtt tgtacgggca aaacacttac      8340
     aatatgacaa aactttttaa atattttttt gttatattag gtaaaaccct gaaccatgct      8400
     gaaaatacat gatgtatcgc aaaatataac cgtgtgcata ttaaaccagt gttttgtttt      8460
     taaaaaccat gaataagtaa acttgaccta ccacaaaact acgaaatcca tatttaacaa      8520
     tatcttaacc attcatgcac ccaaactaga cctaacacaa aactatgaaa tccatattta      8580
     acactagcta aacgcattta tgcaaccttg ccatcagggt ccacaatatc atttgttggg      8640
     gctggcaggg acggttcaga tatcatcggc atttggctta aattggccta aaataagaaa      8700
     cagttgcatg taattagttt gttagtggta acgagagtaa aaaataatga attatatgat      8760
     ctaacattat cggctgtagc aggtgggtca gcaagtcctt ctccatcttt atctgaagca      8820
     ccgtcatcaa ccattggccc gggggttgac ttacattggg cagtcaaatc agactctatc      8880
     tgcaaggcaa acaacagacg ttagagccaa tacacggaaa aaaaaaaaca taaaaactat      8940
     atgagaaggt ttgaactcac tatgcatggg atggtgtact gcaactctgg ctgacctaca      9000
     ttgtatgcaa caccatccat gtcaacaagc accacatatg gatcagggag gctgggctca      9060
     gattcaaaga actcattgac gtctgtggga ggaggaagca aacactgagt atgactcgct      9120
     gcagctggaa taggtttatc agggctagtt tggatatcat caaggccctc tccacctatc      9180
     ccatcaccgg gggcatcaac caagatatta tcttgatggg atacagtttt atcaccagaa      9240
     acagactttt ccgcaaacat atcgtctaat tctttagccg gcagagtgga agagccaatg      9300
     tcatgaatcc catctctagc tgactcatcc tcagtggtat cagtcaccac ccctccaact      9360
     ttgttgatat tgacagcttc aggggataca tgtttatcag cagaaacaga cttttcagct      9420
     gaactgttgt ctactgctgg cgtcaggatg gtggctgctg ttgggccatt gttgcctctc      9480
     ttccgtttct gtttgttatg aaaacaatac ttgaattagg aagaactctc ataaaataca      9540
     gaatatttac aaaactgtta aacgtatacc agagaactac gcaatccagg cctagtcggt      9600
     ggggataagc gacctatggg ggttgtagtc tgtgtaggtt ctgcgtcgtt aatatcatgc      9660
     atcacttcac ctaagacttg atcaataaat ccagaaccac tgttctcctt cgactgggct      9720
     accctgccat tatccaaaac aacaagggag gatcccttct tcccacctaa tccctcaccc      9780
     acatctcttg acttaggacc actgtgacgc ttattcttcc tgccatggct ttccctcaac      9840
     aagctgctca atctagcctc tgaatcagct atagccttca acatacgcga ctccatacgc      9900
     ttgtctttca tgtcaatgta atttttaatc gaatctggta tgtgaacctg ccctttagtt      9960
     ttacggggtt tagaagagcc aggcaaggaa gcatcaggtt gtatggtatc ctcatcaaca     10020
     caatcataag tgctacatac atcactgttg tcattccttt catcgggtag cgaatcaggg     10080
     acaacaccac ctgaaaacat ggaccccttg aatatgtgct cctcttttat tagttgcaac     10140
     atgtagtcaa cagatagatc ttcttcgtcc tcgacccaac ctgacttgaa agcgtcacca     10200
     gtcggtgttc cactccaaat agaaacgact ttaatctgaa aaacaaagag ttagacttta     10260
     gccacatgat attatgtttt attacatgta ctaaaagtat ttatactgtt actaacagtg     10320
     aaatatagat tatgtaccca tgtgctcctt aaaaacaaca tgttatttca tcatataacc     10380
     agatgttgta atgcataccg ccatacgtga cttactaagg taacagggta tggttattaa     10440
     aaagaactgt gatcatattt aaaaccatgc agtttttgca taaatcatga tataaataat     10500
     aaatagtaaa tcagcacata ttaaaaaaaa acttaaccac atgctacaca tttacagcca     10560
     tgttatgatt attctaaaga aactgtgatc agatttaaaa ccatacaatt tatacagaaa     10620
     tcatgatata aataacaaat agtaaatcaa cacatattaa aaacctaagc cacatgctac     10680
     acgtttacac agaatgatat gaatctataa ttgtatgttt ttgataggaa aagaagaggt     10740
     tttcatgata aaaacgagca tatgaaaatt aatttacgag agcagagatg cattgctcac     10800
     ctgagactgc cggtcgactt tccaaacaag atccaacttc aaactccata agcgctcaat     10860
     ttccgtatct gtttcctcca tttctgagtc actatcttca acggcttcag ggaattgcaa     10920
     ttctctgatt cgaggaacac tttgcagtag caaaagttgg agtgcgtgtg ggaaaccttg     10980
     aacggtgata gatttccgca taagtttatc agctcccctt gcagtaacac tcttcaacgt     11040
     cattaggaat gacatagtcc cccaaggaaa atttagaaac atgtctaaat tttctgccat     11100
     gtccgcatgg accggagaga ttttacttct acccgaggtt gggcataaaa cgccatcaat     11160
     caaggccagc acagcgtaac gtaaacgaat tccttgatct tgaaccactc gcttcttcag     11220
     cctgccaaca acccactcaa cagatacatc actgcggtca aataggctgt accaatactt     11280
     gccaggcgcc aattttcgtt tccctttcct ctctttcata cgaggcggtt tgtcgcagtt     11340
     caaaccggta acattttgaa actcagaaat ggaaaaccga acaggggatc cagagaaaat     11400
     tacccaaatt tcttgtttct tcctaacaac aagctgcctc gttagcaaaa agtgaataag     11460
     cttcccagaa tacgcggcgc tttcggagaa atcaaataat ttcccaaact gagattcccg     11520
     gagaattttc atgtcctccg catctaacgc gttagcgatg tcatctatca aagacagttc     11580
     actgtaggac tgcactctct caccgttggg ctcggatcca gacctaaaca atcgacgggg     11640
     taaagagttg ttcatcatct acaagtcgaa cccttttctg cacaaaatag aagtttataa     11700
     atcagaaaca gtatgtacct aagatttcag ttaatcggaa tatagattgg agaaataaag     11760
     aagttgatgg cgatcgagaa cgttgaatag cttaaaccgc atatatttgt gaaattacct     11820
     gtagcccgat ggaattgatt gcctaactgc gagattgaat ctaaagaaac gatatgtatg     11880
     agaaacaata tagatttgaa atagatattc ggagagtttg cagaatctat gggtagagaa     11940
     cggaagacgt ttcctctcgg aaaaccagca aatgaagcgg cgctaggttt ttttttggag     12000
     ctcctgatat ttcaaaaaat tcgataataa atcgatttct cgaaattaaa atctatatcg     12060
     tttgcgtcca catacagcat tgctcttacc aaggttttca aaattcaaat ttctgcaatc     12120
     atacgcctat acacctatat gtcccctaac caagaacaca gttatagggg gttgcgggta     12180
     atttcagata cgtctccgac agacactata gactcatagt tagtttctat attattattg     12240
     atttcatggt catctagtgc atataccc                                        12268
//
ID   ATR3        repbase; DNA   ; ATH   ; 2388 BP.
XX
AC   .
XX
DT   24-FEB-1999 (Rel. 3.2, Created)
DT   24-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   An AT-rich repetitive sequence - a consensus.
XX
KW   ATR1; ATR2; ATR3.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2388
RA   Kapitonov V., Jurka J.;
RT   "ATR3.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   Individual copies of ATR3 are ~97% identical to the ATR3 consensus
CC   sequence. The nature of the repeat is unknown. Target sites are not
CC   well determined since ATR3 copies are flanked by (AT)-rich sequences.
CC   An existence of several ATR3 subfamilies determined by multiple
CC   diagnostic positions indicates that ATR3 can be a retroelement.
CC   At the same time, multiple copies of ATR3 have internal deletions
CC   typical for DNA transposons.
CC   ATR3 shares common structural features with ATR1 and ATR2 elements;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
SQ   Sequence 2388 BP; 953 A; 251 C; 334 G; 849 T; 1 others;
     atctatatat acatttttgg aggggatttt tgaagataat gttgaagatt tgagccataa        60
     ttcaacaatt aattcaaatg ggtgggtttt acccggttta actctgttcg gatcctggat       120
     aacatgttta attctgttct gatcttggat aacattaatt tttggaaaag ttacctaaaa       180
     actaataatt aaaaacgaaa attaatgatt taattaccaa atttaatata aacaatatct       240
     ctaaactaac catatttctt atttacctta actaatttcc taaaatattt ctacctaatt       300
     taaacataaa tatataattc ttctttcayt tttatttgat cttatacttt atttattttg       360
     aatttatata aaatatatat agttaataaa atattatatt tttttctgaa tatgatgtaa       420
     ttcaaatttt ttaaaacgga catatattat tcaacctatg aagaaataat atgtgtacaa       480
     tgtcccacat cgcttagaaa aattggacaa tggttcagac ccatattata aaaggaccaa       540
     aatgattctg attacgaatg agcaggaagc ttgatttatc aggcgtccaa aattaaaata       600
     gttatccgat tttactcgga ttttttattt taaagaattg aaactttaaa atgtttcaag       660
     aaattataaa tattataact ttatcaaaag ttaaatatta taattttaaa aactttttat       720
     aaagtttatc tttaaaaaat gctttaaata tttataattt taaaacttat aaagttttaa       780
     aaattataaa ttgaatttta caagaaattt aaacattata aatatataaa aaatatatta       840
     atacgagacg atatattaca ggaaaaatct taaatataac aatcaaaatt caatgatgaa       900
     ttttgggtcg atattgtatt ttttttaagt ttcaaatttt ataatattga aatttataag       960
     aaaatgacaa aattatgttt aatttcacgg gactgggtta tatggtagga cgggtttggg      1020
     tggataataa ttacgatttt acaatgtccc acatcgctta aaaaaattgg acaatggtca      1080
     agagccatac tataaaaagg accaaaatga tttcgattac gaatgagcat gaaacttgat      1140
     ttatgaggtg tccaaaatta aaatggtttg tttactaggg ttatttattt taaaaaattg      1200
     aaactttaaa aagtttcaaa aaattataaa ttaaatttta caagaaattt aaacaatata      1260
     aaagatatta atacgggacg atatactgcg agagaaatct tagatataac actcaaaatt      1320
     caatgatgaa gtttgggtca atattaatct tttttgaagt ttctaatttt ataaatattt      1380
     gaaatttata ataaaatgac aaatttgtgt ttaatttcac gggacggggt tatatggtgt      1440
     gacgggtttg agtggataat aacatgggat agtatgctat ggaaaaaaac atataattaa      1500
     caatcataat ataattatat aatcttaaac actaaacaaa attaacaata ttaaaaaaaa      1560
     acacttaaaa ctttaatttt tttaaaacac attttgattc ttttataaga aatttaaaca      1620
     ttataaatat ttaaacttta tactacgggt gaaattttag aattgactgt ttgggttgat      1680
     aagaatttgc gatagaacta ggagttaaat cctagaatga caatcaaaat ataattatac      1740
     aattaaatac taccacgagt gaaatcctag aattgacgag tttgaatcga tattaatatg      1800
     ggatggtgta ctacgggtga tattttagaa ttgactggtt tgggttgata ataatttgcg      1860
     atagaattag gagtgaaatc ctagaatgac aattaaaata taattataca attaaatact      1920
     accacgggtg aaatcctaga attgacgggc ttgattcgat attaatatgg gatggtgtac      1980
     tacgggtgat attttagaat tgactggttt gggttgataa taatttgcga tagaattagg      2040
     agtgaaatcc tagaatgaca attaaaatat aattatacaa ttaaatacta ccacgggtga      2100
     aatcctagaa ttgacgggtt tgattcgata ttaatatggg atggtgtact acgggtgaaa      2160
     tccgagaaac aacaatcaaa atacaattat acaatattaa acatttaaca aaataaacaa      2220
     atacaactta aaactttaaa atttgagtta taaaatttcg tctcgcggtg aattatacat      2280
     ttaaatcaaa caatagcata aatttattaa atcatcctaa aaaatattca attatttttt      2340
     atttaataaa aatataggcc cgcggtatac cgcgggttaa tatctagt                   2388
//
ID   HELITRON3   repbase; DNA   ; ATH   ; 15335 BP.
XX
AC   AL132909;
XX
DT   01-FEB-2001 (Rel. 6.1, Created)
DT   01-FEB-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   HELITRON3 is a autonomous DNA transposon.
XX
KW   HELITRON superfamily; Autonomous DNA transposon; HELITRON3.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-15335
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON3.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
DR   GenBank; AL132909; Positions   74651   89985.
XX
CC   HELITRON3 is a DNA transposon that belongs to the HELITRON
CC   superfamily. It encodes a DNA helicase-like protein
CC   and proteins related to the replication protein A.
CC   There are two copies of HELITRON3 in the
CC   genome; they are ~93% identical to each other.
CC   HELITRON3 is inserted into the TA target sites, without
CC   duplications of the target sites.
XX
SQ   Sequence 15335 BP; 4968 A; 2502 C; 2752 G; 5113 T; 0 others;
     atctacttaa catttttgaa gtacaaaata aggaatttat tgggtcgggt tttgttttgg        60
     gttttaccca ctttttttga ccggatcttt ggcccaaatc atgttaattg gcccatcaac       120
     ctccaagatt tcgtctcctt caaatcctct cacacctaca ttcactcaca caatgaatca       180
     cggaaaatca atctcttaat caaggcacaa atctattaca ttcagttttc ctaatctatc       240
     aaagaatctt tactaatcaa gttgttgata ttataacttc catgaatctt acctatcatt       300
     tacctataat tgctaatcga atcaagctca ttatattctg actatttatc tttcaaacca       360
     tttatattca ctgtcctatg ataacgctta tttgaaatgc agttaccaaa acaatcaaat       420
     ccatatctac tctgtttgga agttacattc aagatatgac agtatctact taacatattc       480
     aatcgccttc aatataaaga tattgatcaa gccgcatatc cagcttcatt tatttgcaga       540
     gaatattcac tgattgattc taaaaagatt acgcctactc tataatctaa aaccctatac       600
     aatctcacaa cactataaat atactctata ttgcatacca tttctacaca ttgcagaata       660
     tcaagatatc gttccatttt tgagaatcac tttgcttacc tttcaaatgg ttgcctcttt       720
     tgcgttcctg agagatgtcc gatcatacaa gacctcatgg cgtgtccaag tcaaggtgct       780
     tcactcttgg cgtcaataca ccaacatgac aggtgaaaca ctcgagttag tgttggcaga       840
     ctcacaagta agttaagtag atattgtttt gacgcatttg attgcgacca aatatgcact       900
     atgttattga catgtgctaa atatttgttt tctgtttata ctagggtgtc aagattcatg       960
     catcagtgaa gagggacttg gttagcaagt atgtgaacaa cttgcctttg aatgagtgga      1020
     ggtttataga aacctttgct ctaaaccatg catcaggtca attccgacaa gatgttattg      1080
     gtcaagtggt taatattggt gagcttgaga ctctcgaggc tagcaacaaa cctaccacaa      1140
     agcttgactt cgaattaagg gacgacacat aagtctatgt accctgacct aaatcctcaa      1200
     gaatgtaatt tagaaagcaa tctcttgata tattgttttg tttagtgatg agggaatgtc      1260
     ctctacttta tggggagcat ttgctcagag agtttttagt gcatgtgaat ctgctgatgg      1320
     tcaaatggtt atttgtgttc tgcgatttgc caagattaag tcttacaaag gtacatgtct      1380
     actcttaact ttcttgattt tactcattga ttataacatt tatgaccata actaaaatac      1440
     agtttctaat gtatgtagga gttaggactt tttctaactc ttttgatgca tctcaagtcc      1500
     acatcaaccc gaaatttcca tgaagttcaa gcttttgttt ctcgctttgt tttctttaag      1560
     agtctgttta tttgatagtg taatgttgtt ctgattccgt ttatatgatg tgattgaaca      1620
     gtttacctgc tgatggtctt tctctcactt tccgtgagag tgttccaaag tttcaaatga      1680
     ttactgtgaa acaagattat gactgttctc agtatgagag gaagtcaatc cgtgatctgc      1740
     ttcattctat ggaggtttga gttctaaatt ttagcagtac tatgaatttg agtaaacata      1800
     tacttatata aattttcatt tcagattgga aaagttaggg ttgtctccac catatatgct      1860
     cttgacttgg attggtcatg gtattacttt agttgtcgta attgcaacaa gaaagtgact      1920
     cacattcatg ctggtgttaa cacaacttca tcgaagtcat caaaaccaag gttttggtgt      1980
     gatgtctgca agaatgcagt cactaatgtg caagccaagt aagtatgcct cacagtttaa      2040
     ttgctttgtt ctaccttaac tagcaaatgc acacattaat tgacccttat ataatttaag      2100
     gtacatgctt tatgtgaaag tcatggatga cagtggtgaa accaaattcc ttctgtttga      2160
     taccatctgt gcagacatgg ttggtgaatc atgtacatcc atgttaggtg gctcttttaa      2220
     tgaggtatac tttcaatcga aatagttatc ttcttatgta tgtggaatct aatatgttgc      2280
     aagtgtatat aaactggcta actaacaatt tatggtctta ctatttagat tgaggatcca      2340
     aatgatgtcc ctgacggttt gagaaatttt ggttgggaag acttttctat ttctggtatc      2400
     tgttgagaaa gaaaacatat gggatggtaa ggattctttt aaagtcacaa ggctattgtc      2460
     taccgatggt ctctgtggtg aagcggtcct cgaagactca gaccactctg tcaaccctgc      2520
     atccattgtt tctggggacc aggtatgatt ctacacatgt tctccttaac aaatcaggtg      2580
     taaattatat agtatcaatg aaacttttct aaactctgtt ttcgtgttta cagtgtatta      2640
     tgttaacttc gagccagaag acttctaact cagttacttc atcatctaag cgtgtttatg      2700
     ctacaaagtt gtcagactcg gaacaatcat ccagttccaa aaagctttgt gttcagccat      2760
     tggatttgga gaaatctgaa cctgatatta atgatgaagt cgctattaag gaggtgaaga      2820
     ctgctgagat aactgacatt gttgaaggtg cttgaattac agataaaggg aagggtgtga      2880
     aatgccacga aacacctcag gtggtagtca agaaggctcc aaataaggtg gttactaagc      2940
     ctatgcctgt gaggatcaag caggaaaaga agtgacatgt tttcaagttg tcttgatcca      3000
     tgactcatgt ttatgttggt tttagaagtt attgctttgg ttttgttttt cgaacaattg      3060
     tttaagttta ataccttttg ttcaatcttg aatttgtttc tttagacctt gatattaatt      3120
     tgtttctgtt tactttcctt aattttgatt attaactatt ttattaggtt atacatataa      3180
     tcaagctaat gttagtaacc aacaactaag agagtgaatg cctataatca aactaatgta      3240
     tatgggactc tgactgatgc atataagtat gaatattcat ggaaagagga tatttacctt      3300
     atgctcatgg tgaacttcat atatttgaat tcctgaaaac aaatgtaaat atttagtata      3360
     cacgcaataa taatttactt agtttcaaaa aaataatgat tgtaatctga agtcgaaaga      3420
     tatgtaatct atgcaatcat tagaacaaag aagtttctat cttttgattg gatcaaggat      3480
     cggttattca taatctcgat attttcatta tatttcattg tttatattag gaaatataca      3540
     taactcaatc gtttcgactt tcctatcctt tcaactgtct atatatatga aagacctttg      3600
     gttaaaaaat aaaactatct cctctcttaa cttctctgta aacagtttcc ttaaaaacta      3660
     aacctaatgg gtaccattga ctatatccgt gatttcaatc tcgagagaac caactgggtc      3720
     ctctatgtga agatcttaag tctatggaac catctggctg tcaacaatgg tgaaccgaca      3780
     accatgattc tctgtgatga gaatgtgagt tcataattca actacttgtg aagttttcat      3840
     aattttgttt ctgaaacctg ttcataatct agagtatttt tgtttacgct tcacagagat      3900
     gcagaatcga tgccagggta ccttctcgaa attatttgta taatttcaga tctaccctac      3960
     gtgagggaac gtggtattac atggcagact tgcttctgaa gagagcaact tcaacaacaa      4020
     agtactcatc atttatttat gagatcaagt ttatttggcc aacaacaatg tggcgtgtaa      4080
     gtcctagatc gactcagatt tctctgcaag taatccattc tgatgaggtt gaatatgaac      4140
     ctgacactta tgttaatgat aaactaagtt attcattcta atgttcttat agttacagtt      4200
     attgcataag gaaaatttac agactctgac ttaactattt tgattgtaag atgttgttgg      4260
     aatcatatcg agtgtttcta cttttgcgag gtttccttac gtctatcgtg aaggggaaac      4320
     tgactatgaa gccagatatg tgaagtttac tatcagagac aatctgtaag ttacattatc      4380
     tatgtaactt gtagacatgt aggtttataa ggaacagaac tgtctgatga ttggtttctt      4440
     tggattgttg tttgttgtag taataggata accacatgtg tagctaaagg gagggcctgt      4500
     gagttatttt tgatcaagtt ttatcgacgg attggtttgg tcacttataa ctttgagcca      4560
     attgttgctg tggtccggtt ctggagagtt catgatttca aaggttagtt aaaattcatc      4620
     tataagtagg cgctttcata gattcatgat tatacaatag acatttaaag tagataacaa      4680
     tactgatttt gaagtctctt ataggatcca atgccttatt cagtgaggat ggatgttcta      4740
     aactactcat tgatccttta tttccagact atgatcttca aacttacatg tatgtgaaat      4800
     cgagtagttt atattaactg tacaaagacg tattcctata ctttttccaa gtgaattgag      4860
     ttttattgtt ttcttacagt ggttggaatg catatggaga tgacgaagtg gttgatggga      4920
     agattgatta tgtaattgaa aactaaagcc gtgttcttat ttctgttttt tgtctgaact      4980
     aatggattgt tgtcctgctt ttgaagtcct atgactcttt tatttatgtt gtggttcctt      5040
     tgatatttcc caaatttaag tacctatttg aacttcttat tttgttgatc tactgttaat      5100
     atatgcttat gttattagtt gtatcatagt cactaccagt atttttaaca attttagaaa      5160
     aactagatta gtaacttgca aaataaaatt ttgaaatgtg taaaactcaa atcaatttaa      5220
     accaaatgga agccagttat atgataaaaa gatggatgtg atataactga gtttttcatg      5280
     ttgaaaaact gaatttaaaa cacaagccaa tccaatggtt cttgaaaaca caaaaagaat      5340
     ctgattgttt tcaaaactgt aataatttat tttagatatt aaaaaaatct cttgaaaatt      5400
     aaattacata aaagataaat tggaagccat aagttatatg aaatataaaa gtcatcttct      5460
     tatcccattc atcttccaca caagaacaaa aacgtttaga gagaaatata aacacttttc      5520
     tgaaatgtca tttctaaaga ccttctcaga tgtgcatcct agaaagacga gatggtttgt      5580
     ctttgttaaa ttactccgtc tgtggaattg gcctccaaat tatgatggag aagaacctac      5640
     tatgattttg gctgatgaga aggtatggaa gttatgtcta aagctatgcc tgatttataa      5700
     ttgtggattt ttaattatca ctatacacat tcatgcaaga tttagtcaga tttacaaaaa      5760
     ctttctcagg gaaacaaaat cgatgcaaat tctcctctcc atgtaaagaa agaagtgttg      5820
     atttcaacac ttaaagaagg gcaatggtat ctgctatcac attttgaagt tgccgtggct      5880
     aatccactgg atagattctc taaccatgtg ttctaactta cgtttttaag aaagactaca      5940
     atggaggaag tagcttctag aaaaagatgt cagtttattg attgttagcc tttataccgg      6000
     atcaagcatg cttctactgt tgagaagcaa tttgttgttg gtcagcactt gagtatttgt      6060
     ttttaactat gttcggacta ctatatggct tacagatata aatactaaat tgtatgattc      6120
     ttggttttta tatatttaca gatgcaatgg gaatcattga agctgtgtct ccaatcggca      6180
     aaattccgtg gtaaagaggg agtttgaagg tgactatgaa tctagctatc cgactttcac      6240
     aattaaagat accacgtaag tttatcctca actatcatac attgtactta ggttgatgac      6300
     acttttggat aatggattca atgcactaca tgttataggt cacagttaat gaaatgtgtt      6360
     gcaataggaa ggtcttgtga tgagtttgaa aaaaaatggt acaagaaaat aagcgagatc      6420
     aattttaaga tggagcctgt gatgattatt ctccgttttt ggaaaatgtc tgagtttcaa      6480
     ggttatattc ctatttcttt ctactatgat tgttctacta ggatatctaa tttatgaatc      6540
     agataatcta aattatgttt tatacacagg aaatccatgc ttgataagcg ttggtggttg      6600
     ttcaaaggtt tacattgatc caaatttcag aggattagac aagaacacct atctgtaagc      6660
     tacttattta ttacagaatc aataaccttt gaagtttttt aaagttccat attaactttg      6720
     tctatttgtt gtctatttgt acagccgtaa ctttgctgga tcagatgatg aagatgatga      6780
     catttttatg gagactgtgg agtccaattt ctaagttatc gatatgccat tttaaatccc      6840
     agtgtactaa gcttcatata actaggttta ttttcttctg ttctatgttg gacttccttg      6900
     gagtacttta tattatgaat gcttatgtct acttttatct gaatataagt agtgtaccaa      6960
     cttatattca gcataacatg ttttacagga aatgctaact taaactacta gagtaaaaga      7020
     agaatcgtat tacctttatg agtttgctat cttctctgac ttgaaatgcc tgaaattata      7080
     gtaagagaac aaacttagta ttattactga attatttgga taatatgaaa aatccgtgaa      7140
     ggaaataact ataaacaacc attattcatg tagctaatga atcaaaatac ttaatcatca      7200
     ttatctactt aacatagttg gaatcattag caaattttag ttctgtaatt tgattggcta      7260
     cagagtcggt tatgacaaag atataattga ttaaaggatg tgaacggtta ttgaggaagg      7320
     aaacctttca tatagattca ctaaatcgtt acaacattcc tctccattca atatatatat      7380
     aaggcaaagg gtaggttaac ttcagacaat ctgtactcac ttttaaatct gtatcaaatc      7440
     catacaccaa gatatgaccg acacaaacta tatccctgac atgaatttgc acaggaaaaa      7500
     tcatgtccta tacgtgaaaa tcttaagcat ctgggaccat cattctatta tctgtggaac      7560
     tcctgctacc atgatcctct gtgatgtgaa ggtttgttct agaataaatt ttttggtttc      7620
     ctattttttg ttcttgcttt ctattgtatt ccaaagaact tgatatgttt ttattttttt      7680
     ccaggggaat agaatcgacg ctagagttcc ttagcgtgat tatttataca atttcaagcc      7740
     tagcctattt gaaggaaaat ggtattacat tcaggacttc cgattgaaga gagcaacttc      7800
     aatatctaag tactcagatt acgtttatga aatagagttt atgtggcaca ccaaaatgtg      7860
     gcctataagt gatagatccg atgaaagttc tctccaattc atccatgctg atgaagtcga      7920
     atctgaatct gaggattatg taactggtaa tctaagactt atctatatag tttatgcttt      7980
     ctctctattc tatttcctta gtactaagat ttataagtta tttgattgct ctgttgttat      8040
     tgttagatgc tatttgagtc atatcaagtg tctcaactgt gtcaagattt ccatatgtct      8100
     gtcgtcaaga cacttgattt tatcttcatt ttttcacata gccgagtgaa gcacatacaa      8160
     actggaccat gagtaaaaaa catacatcaa acaatgagaa tattgattcg tcatccaatc      8220
     cgccaaaaaa gaaacagatt caatcactta tgtttcaaag cattaggatg tctcagtgga      8280
     attcaccttc gtctcacggt tatgtcccct ttagttctgt tttgaacaca gttcagcgtg      8340
     atgtaagcaa cacctctcag ttacacaatt cacccaatgt tagaggtgag gtgtccaccc      8400
     ctaatatatc tgcaagacga agacaaacgt caaaaggtat aaaataggat atgtacctga      8460
     taaagaccag tttgtatcag tatatttcaa ctcattatac tgaacattac ctctcattta      8520
     aacaggaatg ccacttggat ctcatattcc gtctacatat ccaatgtcaa gcataagtat      8580
     gacaggttgt actccatttg tacttagaga tatcaccaat tcatccgttg ggccacatgg      8640
     cagaatggat ggcacactgc ttacgtgtcc tgagactgaa aaaagacaga gaaaagatta      8700
     gtaactaatt attcaaactg tgaatatttt aatacatgtg gtttatgcaa taaagttttt      8760
     gcttataggc aaacaaacta tcaatgattc ggagtgcttg acccaagaac aatcatcatg      8820
     tgtcaacacc agtatactta atatgccaag aaaaagtctg cacatagact ttgctagagt      8880
     aagttctgaa tctaatgttg aaggtgaatg attatctata agtattccta tatgtactaa      8940
     aacctagcca actctgtgtt ttgactaatc atctacttaa cattatccag tgaaactatc      9000
     aagcacaact gcagatcaca ctagcaggga tgaggaaatg tatgatgaga tgaacggtat      9060
     caatctcaat gaggaagagg aactagaaca aaactatgac ataagtagcg gtgaagatgt      9120
     tgggtcacca atcagaatac agagaatgga tttggatgag gcacaagaca tgggaacttg      9180
     cccatctgtc ttatctaatg aagctatttc cacagaacaa gcatcacatg attccatagg      9240
     tcaaaagagc aaagaatcag aatcactaaa gataaagaaa acacgtcgga ggactacaaa      9300
     gagtatacct ttaagtatgg aatccgacta ttgcttttaa tttacatgcc ttttatatag      9360
     acttattaag aaggatattg attatggtta tttgtttctc agcttatctt gatcgtggtg      9420
     accctaccta ttagtgtaaa tattgtggtg cattgatgtg gtatgatgag cgaatcaaca      9480
     aaaggcgcaa tctaaaagat gatgcacctt ttacactttg ctgtggacaa tggtcagtta      9540
     aattatcttt tcttgaagag tcaccagagt tagtaaagga acttcttact gatgatgatg      9600
     cacagggtcg gaattataga aaacatgctt ggatatataa catggttttt gctatgacct      9660
     ctattggcgg aaaagttgat aaatctatgc caaaaggtca aggacctatc atgtttcgat      9720
     tgcaaggagg taactatcat ttgataggca gtttgaaact ttcggaaggt gattatgcaa      9780
     agtactcaca gttatatata gtggatacag aaaaatgaag tggataacag agctactgta      9840
     atcgggttag cattctcaaa accaaatcac tgaaacataa gcaatgacct aacaattttg      9900
     gttctttttt gttaacacat tttatgctct ttctataatt gtagaaaggg aaatgatgca      9960
     actaacggag gtcgtaaggg caatctgaac aaaaaaaaca attgctgcca taatggatat     10020
     gttaaacgaa gttaatccat atgttgcaat ttttataatt gccaaggaca gattccaagc     10080
     tgctgactgc taacctttct gtatgagaat agccattggt cgtaaggaga aagatcaaag     10140
     gacttacatt aggcctacta catcagaggt tgcagaatta atcccagggg attttgaaaa     10200
     tggtatgcct gaccttgaca ttgttattca agaaaagatt acaggtcacc ttactagaat     10260
     cagtcaaatt catatttcct atctagcttt gcaatatcct ctaatattct gctatggtga     10320
     agatggtttt acccctggga tagagaaatg ttacaaagga aatgacaaaa agaagaagca     10380
     aaaatgcata tggttcaaag ttattatgat gctatggcta tatgcaaaca ctatggattt     10440
     cctgatttat tcatcacatt tacatgtaac cctaagtggc ctgagataac aagatatgtc     10500
     aaggaaagag gattgactgc tgaagatagg cctaatattg ttgctaggat ttttcaagat     10560
     caaattagat tctctcatgc atgatccaac tgagaagaaa atgcttgggt agactgtcgc     10620
     atgtaagtta atttatttca ctatcattct gtacttaaat tgttgatgtc atttacttac     10680
     aataaatatt gttttctgat cgcatcaatg tatacagttg aattccagaa aagaggcctt     10740
     ccacatgcac acatccttct gtttatggac tctaaaagta aattgccaac agctgatgat     10800
     attgacaaga tgatttctgc ggagattccg gataaagaaa aggaacctga gctatatgag     10860
     gttattaaga agtgcatgat tcatgggcca tgtggtgcag ctaataagaa ttctccatgt     10920
     atggtcgatg gcaagtgttc gaaaaattat ccaaaaaagt ttgaggagat aaccaaggtt     10980
     ggtaaggatg ggtttccagt ctatagaaga aagcaatctc ataactatgt tgagaaaagt     11040
     ggttttagat gtgataatag gtatgtggtt tcttacaata agatattgtc agttcgatat     11100
     ggtgctcata tcaatgtgga gtggtgtaat cagaatggtt ctattaagta cttattcaag     11160
     tatataaata agggtccaga tcgatttgca tttgtggttg agcttgataa accacaaaca     11220
     acatagacta atgagaatgt caatggcata gcagctggtg aagaaccctt accaactaag     11280
     aaaaagaagg acgaaatcaa agattatttc gattgcaggt gcttttctac atagtctttc     11340
     ccagctttgc atttatataa attgtcccga tatagaattt atagtttatt tcttttctat     11400
     attacaattt cagatatgta tcagcctctg aagcagtttg gaggatattt aagttcccaa     11460
     tccagcatag atcaactcca gtgcagcacc tatcatttca tgttgaaggg aagcaacccg     11520
     cattttttaa agggaaagag tctataaaag aagttttgga acgtattgcc aaccaagatt     11580
     cccaattcat ggcttggttg acattaaaca ggaatgatgt tgttggtaaa aatagaaaac     11640
     gtgcacgtga tctcttatat gtagatatcc cagcgtattt tacttgggat agaataaata     11700
     aaatgtggaa caaaagatca tgtggatttt cattgggacg tagaaattat gttccaagga     11760
     aattagaaga tgaatatttt ctaagtgttc tgcttaacat tgtcagaggt ccaacgtgtt     11820
     ttgctcatat caagacctac aatggtgttg tctacccaac ttacaaaaca gtctcttttg     11880
     ctcgtggtat tcttgatgat gaccaagttt acattgacag tttggtggat gcaagtcaat     11940
     tctgctttgg taatttcttg aggaatttct ttgcaatgtt gcttctatct ggttcattat     12000
     ctagaccata atatgtttga gaacagacat gggagttatt atcataggat atgctggaaa     12060
     aaaagagaga tgactataac aatcaaggta tgatcgtgtc taagcttcat tcatttcatt     12120
     tcatatatat gtaatgttac atatgaattc acacatcatt tattgttatt cttcttttca     12180
     gagttggaat taacagaagc tgaaatcaag aactacactc ttcaagaaat tgagaagatt     12240
     atgctgttta acggaggtac aattacagag attgagaact ttccacagcc aacaagagaa     12300
     tgtattgata actccaaccg gttgatagta gacgagatga gatatgaccg tcaatatttg     12360
     actggcaagc atgctgagtg gatagatatg cttacacctg agaagagagg tgtgtatgat     12420
     gagattacag gggctgtttt taaggatcta ggtggagtgt ttttcgtgta tggatttgga     12480
     ggcacaagaa aaacttttat ttggaagact ctatctgctg caattagatc tagaggtgac     12540
     atagttctaa acgtggcttc caatggaatc gcctcattgt tgttagaagg tgggaggaca     12600
     gcgcattcaa ggttttctat tccacttact ccagatgaat atacgtcttg cagaatcaag     12660
     ccaaaatctg atcttgctaa tctaattaga aaagcctctc tcattatatg ggatgaagca     12720
     cctgtgatga gcaaatggtg ttttgaatca cttgataaga gtttctctga tattattggt     12780
     aacaaggata acaaagtgtt tggtggcgca aggttgttgt ctttggagat gattttagac     12840
     aagttctccc tatgattccc aatgcaggga gagctgaaat tgtcttggca gctctaaatg     12900
     cttcatatat ttaggatcat tgtaaggttc taaagctaac taaaaacatg cgcctgctaa     12960
     gcaaagactt aagtgaagaa gaagctaaag acatcaaaga attttcagat tggcttctgg     13020
     cagttggtga tgggagaata cctgagccaa atgacggaga agaactcatt gatattcttg     13080
     aagaactatt gattacataa acaggaaatc caatagaagc tattagtcat gagatctatg     13140
     gagatccagc aatgttaaaa gttaatgaag atcaaaaatt ctttctaaaa agagttattt     13200
     tatcacctac caatgatgat gtgcacacaa tcaatcagta catgcttaac aatatggaag     13260
     gtcagttgta tgtgagccta gagttttaaa ttttctttta agacaattaa attttaattt     13320
     attaatttaa acttgcaggt gaagaaagaa tattcctcag tgctgacagt atagatcctt     13380
     cagattctga ctcattgaaa aatccagtta tcacgcctga tttgttaaac agtatcaaac     13440
     tatccggttt gccacaccat gaattacgtt tgaagattgg tgctccgatt atactactta     13500
     gaaatcttga tcctaaaggc ggtctgtgca atggaacaag acttcagatt actcaaatga     13560
     ctatacaagt tcttcaagca aaagttataa ttggggacag aagtggagac attgttttga     13620
     ttcccttaat taacattaca ccatcaaata tgaagctgcc cttccggatg cgtaggagac     13680
     agttcccagt gtcactagca ttcgctatga ccatcaacaa gagtcagtga caatcacttg     13740
     agagagttgg tctctattta ccgaagcccg ttgtttcaca tggccaacta tatgttgctc     13800
     tgtctagggt cacttcagat tctagataaa gcagggaaga ttcaaaagca aacaacaaat     13860
     gttgttttca aagaagtttt tcagaatatc atctgaaatc tcctcaagaa tgattcgtct     13920
     ttcattctta tcaaaaggta tgtttcattc tttaatcttt tattgattag ttgcttcatg     13980
     gttggcaaaa cccaaaaaaa tcaaagttat tcctgacaaa actaactgtt tgcatctaat     14040
     gaacaaggca attacaagat ggaaaccaaa ggatgcaata atcacagacc taatcaatta     14100
     ccatttcctc tagctaacca ttgtttaaaa ttccataata acacaagaat caagtagcta     14160
     atcttacagt tctacacttc gcattttcat caattccatg tcttgaattt atcagccatt     14220
     agtcctgcat caaacagaaa caaatgtcct acttcaataa attcaaaact gcaaaaattt     14280
     tccgtgtctt ctcaatcatt catctagctt tcgaattcta aatttcgatt ctaggtttaa     14340
     ttttgaatac aattcccgac gtttacagag gcatagagta agtacagatt aaatcaattg     14400
     acaatctttg aatgaaacca atctgactcc aaaacttacg cattattttc atgtattttg     14460
     cagattctgt ttttcacaat tggaacatgt accacctgtg aattccgtgt ttcagtagct     14520
     ctagcatcat caattgagga ttgaaaaaga gtgttagaag caaaactcag tagaaagagg     14580
     atttcaatcg gatttttgaa ggtaacgaga gttgagagag agtaattttt tttttccgtt     14640
     ttttttttct gttgacagtt aagagagtca tacagtattt gggcttaaaa tattaagtgg     14700
     gcttcgattt tagatttgcg cttcaataac attatggttt aaacaaaaga tgaaattgta     14760
     ttgggctttg tttattactt agttttcaga aatattatca aatttataaa catacattgt     14820
     tttaaattaa ttatacaatt tagaataatc acaatcatgt ttaaaaaatt tagtaattga     14880
     gtgtattcat tattagactt tatcatataa aaaaaattga attacataaa tccaaataaa     14940
     aatacatgtt agacattaca acattgcatt tcatgattaa aataaatacg aatactaatt     15000
     ctaattacca ttagattact aaaattccac atacttatac acacaacaga agctataggt     15060
     tcataaaaaa aattaaaatt cgacaaccct tcaaaatcat atgcttacaa aaatatacac     15120
     attctatcaa ctaatttgaa aactccgcaa aataaccaat gttatcgtaa ccttaattac     15180
     gtgtccttta attatacaca cagccaaata tataattgag aagtaaggaa aaatacaaca     15240
     accatactaa acataaacta cattgtcaaa acacaaaaca taaataattt taaaaaaaaa     15300
     aaaatctcgc ggtgtaccac gggtcatatc ctagt                                15335
//
ID   ATGP2NI1    repbase; DNA   ; ATH   ; 1167 BP.
XX
AC   .
XX
DT   06-MAR-2000 (Rel. 4.1, Created)
DT   06-MAR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   Internal portion of nonautonomous ATGP2N gypsy-like LTR
DE   retrotransposon - a consensus sequence.
XX
KW   GYPSY superfamily; nonautonomous LTR-retrotransposon; ATGP2NLTR1;
KW   ATGP2NI1.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1167
RA   Kapitonov V.V., Jurka J.;
RT   "ATGP2NI1.";
RL   Direct Submission to Repbase Update (00-MAR-2000).
XX
CC   [1] (Consensus)
XX
CC   ATGP2NI1 is an internal portion of the ATGP2N nonautonomous
CC   LTR retrotransposon. Its long terminal repeat is deposited
CC   in Repbase Update as ATGP2NLTR1.
CC   There are more than 5 copies of ATGP2NI1 in the genome;
CC   they are ~97% identical to the consensus sequence.
CC   ATGP2NI1 shares the same PBS with ATGP2I. The last one was
CC   likely related to transpositions of ATGP2N.
XX
SQ   Sequence 1167 BP; 422 A; 176 C; 327 G; 242 T; 0 others;
     agttggtatc agagcatgct tgatcctagg atggataggt gctcgggaaa acgtcatagt        60
     aaggttttgg cggataagga agttgaggga tcgatgtgtt tggaaacgga aacagttacc       120
     caactcacga tcaggaacca agatattatc cttgttgtca aaacttaaac atgacgggaa       180
     aatgggttga tatattcgga gatggaccga tatcaatgaa atttggatct agtcggaact       240
     tgactaagat cgggtacaga cttagtcagg atttgactat ttctggggtt ttgatcttat       300
     cggaaattga ccaagatcat ggaaaaacga caaggtcgga agagacctat gtcgggaata       360
     ttgaccgagt ccggtgggga ccagggtcgg aaatattgac aaagtcggaa aaagacttaa       420
     gtcgagaata tgatcgagtc cgggaaagga ccaggatcaa aaatttgatc gaatgtcgga       480
     agagacaaag atcagaaaac attgatcaag tccaggaaag gacaaagatc gggaaataat       540
     gatcgagtcc gggaaaggac caggatcaga aatttgatcg aatgtcggaa gagacaaaga       600
     tcagaaaacg ttgatcaagt tcaggaaagg acacagatcg gaaaacgttg atcaagtcca       660
     ggaaaggaca aagatcggga aataatgatc gagttcggga aaggaacagg atcggaaatt       720
     tgatcgaatg tcggaagaga caaagatcag aaaacgttga tcaagtccag gaaaggacaa       780
     agattggaaa acgttgatca agtccaagaa aggacaaaga tcggaaaaca ttgatcaagt       840
     ccaggaaagg acaaagatcg ggaaataatg atcgagtccg ggagaggacc aggatcagga       900
     atttgatcga gtgtcgtaag agacaaagat cgggaaactt gatcaaactc ggaaatagag       960
     atttgatcaa atgtgatatc taaagtctcg gagagactaa agatgggaaa gcgttaagga      1020
     gtaaacaaga tcttacaccc gctgaattcg aggacgaatt cagtttaagg ggggtagact      1080
     tgtaacgccc gtgtcccgag ttagggagta agcaagatct tacacacgcc gaattcgagg      1140
     acgaattcag tttaaggggg gtagact                                          1167
//
ID   ATREP11     repbase; DNA   ; ATH   ; 1055 BP.
XX
AC   .
XX
DT   06-MAR-2000 (Rel. 4.1, Created)
DT   06-MAR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   ATREP11 repeat - a consensus.
XX
KW   ATREP superfamily; ATREP11.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1055
RA   Kapitonov V., Jurka J.;
RT   "ATREP11.";
RL   Direct Submission to Repbase Update (00-FEB-2000).
XX
CC   [1] (Consensus)
XX
CC   There are ~50 copies of ATREP11 in the genmome.
CC   ATREP11 copies are 93% identical to the consensus sequence.
CC   ATREP11 shares common structural features with elements from ATREP
CC   superfamily; it has conservative termini: 5'-ATC and ATCTAGT-3'.
XX
SQ   Sequence 1055 BP; 445 A; 109 C; 129 G; 371 T; 1 others;
     atctacatat acatttttgc agccatttta gcaaataaat cctcaagttg gaacttattt        60
     acaaggaatg ccattgacat taattattat caattaatta atattcctaa ttattagcat       120
     ttccttatct aatatatctc catcaattct aattactttt aaaaaggaga aatcttagga       180
     ctttattaat attatacttt attaaagata aatattatag ttatttaaag tttataaaat       240
     gtttagaata tttaacgaaa aaacgtttag aatatatata atatatgaaa tctataaaat       300
     taaataacca tttcaaaaga aaacttttaa attgatttga attataaatc ttttaataaa       360
     aatattatta gaacaaaaaa aaaaatgttt aattttaccg aactagatta gatggtggga       420
     cgggtttaga atattataat gtatgaattt tataacaatt aaataaccat ttgaaagaaa       480
     aattttaaat taatttgaat tatatatctt ttaaattaaa gtattattaa aacaaaaata       540
     acaaaaacaa aatgtttaat ttcactgaac ggggttagat ggtaggacgg gtttgggtcg       600
     acagtaatac gagacggtat accacgggtg aaatccatta gatatgttta gtttcactga       660
     acgggattag atggtaggac gggtttgggt cgatagtaat acgagacggt ataccacggg       720
     tgaaatccta gatataacaa tcaaaataca attatattat cttaaatact aaacaaaaca       780
     aacaatatta ataaaataaa tataatttaa atttaaatta tttagttata atctagattt       840
     taacttaatg aactgtatgt tattgttcct atatttttaa acagtaaaaa tcaaacatag       900
     taattgtata ctaaataata tayagatata agagttgtac atttagaaaa tacaaaacat       960
     taaatcatat atatttttaa tcgactaaac aaattaaatt tttattttta aaaaaacaaa      1020
     atagtcccgc ggtgtaccgc gggttaaaat ctagt                                 1055
//
ID   ATHILA_LTR  repbase; DNA   ; ATH   ; 1539 BP.
XX
AC   X81801;
XX
DT   11-NOV-1996 (Rel. 1.1, Created)
DT   04-2001 (Rel. 6.11, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATHILA endogenous retrovirus.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; GYPSY superfamily;
KW   Athila; ATHILA_I; ATHILA_LTR.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1539
RA   Pelissier T., Tutois S., Deragon M.J., Tourmente S., Genestier S.,
RA   Picard G.;
RT   "Athila, a new retroelement from Arabidopsis thaliana.";
RL   Plant Mol. Biol 29(3), 441-452 (1995).
XX
RN   [2]
RP   1-1539
RA   Pelissier T.;
RT   "ATHILA_LTR.";
RL   Direct Submission to Repbase Update (19-SEP-1994)T. Pelissier, GDR 977
RL   Biomove CNRS, Universite Blaise Pascal, 24 Avenue des Landais, 63177
RL   Aubiere Cedex, FRANCE.
XX
DR   GenBank; X81801; Positions       1    1539.
XX
CC   ATHILA_LTR is a long terminal repeat from the ATHILA gypsy-like
CC   endogenous retrovirus. ATHILA's internal portion is reported in
CC   in Repbase Update as ATHILA_I (see comments for ATHILA_I).
XX
SQ   Sequence 1539 BP; 365 A; 322 C; 310 G; 542 T; 0 others;
     tgatatgtct ataattttca tgatttaggc attcattctt caccactttg tcattgtttc        60
     atccacgttt catctcatta ggagtcgttt tagtgtgttt tacatacttt ggacgatttt       120
     gcattaggat tgcatgtgca tggcatattt ggttgttttc aggtactttg gatgcttttg       180
     gagttcaaac agaggaaaat cagaatgccc aatgacgcct tcagcaaaag tactctatcg       240
     cagcctcgga gccctgctag ggcaaatcac tctatcgcaa ccccggagaa gcaaacagct       300
     cagtttcact caatcgcgaa gccggaggaa tcaccccatc gaaaccactc gatcacaccc       360
     tcatgacatc cactcgatcg cactcgatca caaggtcgct ggaccattca atctcgactt       420
     cactgcattt cactcgatcg caagacggag cccctgaagc ccagtttgat caatgacata       480
     ctcgatcact aggaagctca tttcagcccg tcagatgcca atgacacatt cggtcgcagg       540
     atcatgacgt gaagattcgc tatatattta gtttccttat ttgtttcatt ttttcgctta       600
     tataaactac ctcttagggt tttcctaggg cgtcggctag catccgctat tatccgtttt       660
     atttcgcttt tacattttcg caactttgat agccgcagtg tttctcctgc gactttgtag       720
     tttcgttctc aagtatttga tattcagttt tcgtttaagt ctttcgtcat ttctgttatc       780
     atgttttcaa ttgttgcttt gttattgtct ttgattatgt ctgagtagtg aactgtattt       840
     ctgaggatgg gatagaatag ttgtggttta cttggtcgtt ttaggtggtt gagtttagaa       900
     ttctagaatc ccttctggat tagttgcgct tattgcttat ttcactggct aatgtggagt       960
     atgagtccag acgtccagcg ctcaaaaggc gtttaatggg cgttggatcc tattaattcc      1020
     agagatatct gactctaccc caagggattg gctgtagaga gggtattgac tttaacatgt      1080
     tgattcgata atgcctgctt agttagagat cgctaaaggg atttaggtca gtgtctagct      1140
     ttgcttgagg atttctatca cgggagtgaa ttaatctgtt gttgaacttg ttgtctaggg      1200
     ataggttctg tgaagttttg tcaaccgact gaatagatta agtagaccac actattcgat      1260
     taccccatcc ttaggaatcg tttatccatt tgattgcctg ttatcatttc tgctttgtca      1320
     ttcacttgcc tgctattgcc attcctgctt ttagtttcac ttcatttctg ttattgcata      1380
     ctaggactgt tagaaccaac caactttctg cttggcttga cttagagctt tctgatcata      1440
     tctcatctgt ttgcatcaca ccggattgga ttgacatcct aaaatactac aacgacaaga      1500
     tagtgtttta gggattaatt gagtaaaatc ctactatca                             1539
//
ID   ATCOPIA89_I repbase; DNA   ; ATH   ; 4576 BP.
XX
AC   AC068809;
XX
DT   30-NOV-2001 (Rel. 6.1, Created)
DT   30-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Internal region of the ATCOPIA89 copia-like LTR-retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; reverse transcriptase;
KW   LTR-retrotransposon; COPIA superfamily; copia-like polyprotein;
KW   internal region; ATCOPIA89LTR; ATCOPIA89_I; the ATCOPIA89 family.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4576
RA   Kapitonov V.V., Jurka J.;
RT   "Internal portion of the ATCOPIA89 copia-like LTR-retrotransposon.";
RL   Repbase Reports 1(3), 22-22 (2001).
XX
DR   GenBank; AC068809; Positions   74828   70253.
XX
CC   ATCOPIA89_I is an internal region of the ATCOPIA89 copia-like
CC   endogenous retrovirus flanked by the 99% identical ATCOPIA89LTR
CC   long terminal repeats. and a 5-bp target-site duplication (AACAT).
CC   ATCOPIA89 forms a separate family of copia-like retroviruses
CC   present in the A. thaliana genome since members of other families
CC   are less than 75% identical to ATCOPIA89_I and ATCOPIA89LTR.
CC   ATCOPIA89_I (positions 91-4566) encodes remnants of the 1492-aa
CC   ATCOPIA89p copia-like polyprotein. The ORF which encodes
CC   ATCOPIA89p is damaged by one false stop codon at position
CC   1690-1692 (marked by X in the ATCOPIA89p sequence).
XX
FT   CDS           join(91..1689,1693..4566)
FT                 /product="ATCOPIA89p"
FT                 /translation="MGVPVRKSTRRLGRSVGAGSSGTKLKAPMSSNSPDP
FT                 APVVPIRSISEIDAVDSPHSPFFLHSADHPGLTLVADRLDGTNYTQWSSA
FT                 MKISLDAKNKIAFIDGSLPRPAEGTPLSRIWSRCNSMVKSWLLNAVSKQI
FT                 YGSILNLDDATMIWNDLHDRFHMTNLPRTFHPIQQIQDLRQGSMDLSSYY
FT                 TALKTLWDQLDGSEPTESCLCCHSFNCVSKRHYRGKVDRGRIIKFLAGLN
FT                 ETYSIIRGQIIMKKPLPDIAEVYHILDQDDSQRKFGNSIVPAAFQVGIAG
FT                 SHPGVVNADASSPSAGSLIAAYQSFKKDKPTCSYCGFTGHVVDRCYKKHG
FT                 YPPGWKPRKQQVNASPTPQSSSPAITAQVSATVGSGDKQDGGLDSLIGNL
FT                 SKEQLQHFIAYFSSHLTTQFPASVPLNEASTSGISFSPSTYSFIGILTVT
FT                 QSVTNKRSWIIDSGATHHVSHDKSLFSDLDASVSQHVNLPNGSVVMVAGV
FT                 GTVIINTSISLKNVLYIPDFRMNLLSISSLTTDLGSRVIFDPASCLIXDP
FT                 TKGLTIGRGRRIANLYLLDVEEPADSRQLSSYSLNDVIDSAVWHKRLGHT
FT                 SFSRIDMLTDVLGISKQRNKGVIHCDICQRAKQKKLSYPNRNNLCSASFD
FT                 LLHIDVWGPFSEPTVEGFRYFLTIVDDHTRVTWVYLLRLKSDVLTVFPEF
FT                 LQMVETQFDKRVRCVRSDNAPELKFTELYRRLGIIPYHSCPETPEQNSVV
FT                 ERKHQHILNVARALLFQSNLPLSLWGDCILTAVFLINRTPSPLLENKTPF
FT                 EKLTNTTPEYTDLRTFGCLCYASTSPKQRTKFEDRAKACVFLGYPAGYKG
FT                 YKLMDIESNVVFISRNVKFFEDIFLFQNSQASDEVDVTGFFPQISTRVAD
FT                 PGESSGTRTEGEYSSTMRQGESNSESVIPNTEDTSRRRVSRPPGYLQDYQ
FT                 CYSVKESVKESTEHPISQVFSTDNLSSSYCAYINALTKYPTPTSYTQASK
FT                 VKEFCDAIKDEIGALERTNTWIVCAIPPGKTVVGCKWIYTIKLNADGSLE
FT                 RYKARLVAKGYTQKEGLDYVETFSPVARMATVKFLLSVAAPRKWFLDQLD
FT                 ISNAFLNGDLHEEIFMALLPGYVDKDGKPFPPNSVCKLQKSLYGLKQASR
FT                 QWFLKLSHCLMSMGFRNGTGDDTLFLRRTDDTYMAILVYVDDIIIASSSS
FT                 TATASFTAALKESFKLRDLGPLKYFLGLEVARTSAGISICQRKYVLDLLD
FT                 ETGLLGCKPSSIPMDPSQKLNLETGDLLTDVEMYRRLVGKLMYLTFTRPD
FT                 ITFAVHKLCQFTSAPRQPHLTAVYKVLHYLKGTIGQGMFYSANSDLKLKS
FT                 FSDADWGTCTDSRISVTGFCMFLGPSLVSWKSNKQETVSMSSAESEYKAM
FT                 STAVKEMLWLRKLMNDLWIDASEASVLYCDNTAAIHIANNSVFHERTKYL
FT                 DLACHLVRERVLMGQIKTLHVQTEHQLADALTKPLYPTLFLRLIRKMGVI
FT                 NIYTPS"
XX
SQ   Sequence 4576 BP; 1216 A; 893 C; 994 G; 1473 T; 0 others;
     tggtatcaga gctatacgct tagctccgat ttcgttttcc tcctctgatt ctatttcttt        60
     ggcgtgtttt gtgtggttgt ttagatcgat atgggagttc cggttcgtaa atctactcgt       120
     cgtctgggta gatctgttgg tgctggtagc tcggggacta agttgaaagc tccgatgagc       180
     tcaaactcgc ccgatccagc tcctgttgtt ccgattcgct ccatctctga gatcgatgcc       240
     gtggatagtc cacactcgcc gttctttctt cacagtgctg atcatccggg tctgactttg       300
     gttgctgatc gtctagatgg tacaaactac actcaatgga gctctgcgat gaagatttct       360
     cttgatgcga agaacaaaat cgctttcatc gatggatctc ttcctcgtcc tgcagaaggt       420
     actcctctct ctcggatctg gtctagatgt aacagtatgg ttaagtcctg gttgttgaat       480
     gctgtttcaa agcagatcta tggtagtatt ttgaacttgg atgatgctac tatgatctgg       540
     aatgatttac atgatcgttt tcacatgacg aatttgccga gaacatttca tcccatccag       600
     caaattcagg atctgcgtca aggttccatg gatctatcaa gctattacac agctttgaaa       660
     actctctggg atcaacttga tggcagtgaa cccactgagt cgtgtttatg ttgtcattct       720
     tttaactgtg ttagcaaaag gcattatcgg ggtaaggtgg atagaggtcg catcatcaaa       780
     tttcttgctg gtttgaatga aacctattcc atcatcagag gtcagataat catgaagaag       840
     cctcttcctg acattgctga agtttatcac atcttagatc aagatgacag tcaaaggaaa       900
     tttggtaaca gcattgttcc agctgctttt caagtaggga ttgcagggtc tcatcctgga       960
     gtggtgaacg ctgatgcatc ctcgccttct gctggttctt tgattgctgc ttaccagtct      1020
     tttaagaaag acaaaccaac atgttcctat tgtggtttca ctggacatgt tgtggataga      1080
     tgctacaaga agcatggcta tcctcctggg tggaaaccta gaaaacaaca agtcaatgct      1140
     tctccgactc ctcaatcgtc ttctcctgca atcacagcac aagtgtctgc tactgttgga      1200
     tcaggtgata aacaggatgg tggtctggat agtttgattg ggaatctcag taaagagcag      1260
     ttacaacact tcattgctta cttcagttct catctcacta ctcagtttcc tgcttcagtt      1320
     cctttaaatg aggcttctac ttctggtata tctttctcac catctaccta tagttttatt      1380
     gggattttaa ctgttactca gagtgttaca aataagagat catggataat tgattctggt      1440
     gctactcatc atgtaagtca tgataagagc ttattcagtg atctagatgc ttctgttagt      1500
     cagcatgtta accttccaaa tggtagtgtt gttatggtag ctggtgtggg aacagtgatt      1560
     ataaacactt ctatcagttt gaagaatgtt ctctacatac cagatttcag aatgaatctt      1620
     ctcagtataa gctcgttgac tacagatctt ggttctcgag ttatttttga tcctgcttct      1680
     tgcctcatat aggatcctac caagggattg acgattggaa gaggtagacg gattgctaat      1740
     ctttacttgt tggatgttga agaacctgca gattcaagac aactatcttc ttatagtttg      1800
     aatgatgtaa tagactctgc tgtttggcat aagagattag gacatacctc tttttctcgg      1860
     attgatatgc ttacagatgt tcttggaatt tctaaacaaa ggaataaagg agttatacat      1920
     tgtgacattt gtcaaagagc taaacaaaag aaactttcat atcctaatag aaacaatctt      1980
     tgttctgcat cttttgactt gttacacatt gatgtttggg gtccattctc agagccaaca      2040
     gtagagggat tcagatactt cttgacaata gtggatgatc atactcgtgt cacctgggtt      2100
     tatttgctga gattgaagag tgatgttttg actgtgtttc cagaatttct gcaaatggta      2160
     gagactcagt ttgataagcg agttcgttgt gtgagatcag ataatgctcc ggagttgaag      2220
     tttactgagc tttatcgacg gctgggcatc attccttacc actcctgtcc tgaaacacca      2280
     gagcagaact ccgtggttga gaggaaacac cagcatatac tgaatgttgc acgagctctt      2340
     ctttttcagt ccaacctacc gttgtctctg tggggggatt gtattcttac agctgtgttc      2400
     ttgatcaatc gcacgccatc accattgttg gaaaataaga ctccttttga gaagctcact      2460
     aatacaacac cagagtacac tgatttgaga acttttggct gcttgtgtta tgcgagtact      2520
     tctcctaagc aacgaactaa atttgaagat agggctaaag cttgtgtctt cttgggttat      2580
     ccagcaggtt acaaaggata taaactgatg gacattgaaa gtaatgttgt gttcatttcc      2640
     agaaatgtta aattctttga agacatattt ctttttcaga attcccaagc tagtgacgaa      2700
     gttgatgtca cagggttctt tcctcagata agtactcgtg ttgctgatcc aggagaatct      2760
     tcagggacta gaactgaggg ggaatattcg tctacaatga gacaggggga atctaactct      2820
     gagtcagtaa tacctaatac agaagataca tcacggcgac gagtttcgag acctcctggt      2880
     tatttgcaag actatcaatg ctattcagtg aaagaatctg tgaaagagtc tacagaacat      2940
     ccaatatcac aggtcttttc tactgataat ctctcttctt cttattgtgc atacattaat      3000
     gctctcacca aatatcctac tccaactagt tatactcaag ctagtaaagt caaggaattt      3060
     tgtgatgcta taaaggatga gataggggct ttagagcgaa ctaatacttg gattgtttgt      3120
     gctattcctc ctggtaagac tgtggttgga tgtaaatgga tttatactat caagttgaat      3180
     gcagatggca gtcttgaacg ttataaagct cgtctagtgg caaagggtta cactcagaaa      3240
     gaaggacttg attatgtgga aacgttctca ccagtggcaa ggatggcaac tgtcaagttc      3300
     ttactctctg ttgcagctcc tagaaaatgg tttttagacc aactggatat atccaatgct      3360
     tttctcaatg gagatcttca tgaagagatt ttcatggcct tgcttcctgg ttatgttgat      3420
     aaggatggga agccatttcc accaaattca gtttgcaagc ttcagaagtc tctgtacggg      3480
     ttgaaacaag cttcacgaca gtggtttttg aagctctctc actgcttgat gtctatgggt      3540
     tttagaaatg gaacaggaga tgatacttta tttctcagga gaacagatga tacttacatg      3600
     gctatattgg tttatgttga cgatataatc attgcaagca gctcttctac agccactgcg      3660
     tcttttacag ccgctttgaa agaatctttt aaactgagag atttaggacc tctcaaatac      3720
     ttcctaggtc ttgaggttgc aaggacttct gctggcattt ctatttgtca acgcaagtat      3780
     gtgttagatc ttttggatga gacaggtctt ctaggatgta aaccatcttc tatacccatg      3840
     gatccaagtc agaaactgaa tctagaaact ggagatcttt tgacagatgt ggagatgtat      3900
     agacggctcg ttgggaagct tatgtatctg acttttactc ggccagacat cacctttgca      3960
     gttcataagc tgtgtcagtt cacctctgcg ccgcgacaac cacacctcac agctgtctac      4020
     aaagtgttac actacttgaa aggcaccatt ggtcagggta tgttctattc tgccaattct      4080
     gatcttaagt tgaagagttt ttcagatgca gactggggga cttgtactga ttcaagaatc      4140
     tcggttactg gcttctgtat gttccttggt ccatctttgg tttcatggaa gtccaataag      4200
     caggaaacag tctccatgtc atctgcagaa tccgagtaca aagctatgtc aactgcagtc      4260
     aaggaaatgt tgtggcttcg aaagctcatg aatgatttgt ggattgatgc ttcagaagct      4320
     tctgtgcttt actgtgacaa cacggctgct atacatatag ctaacaattc agtctttcat      4380
     gagagaacta agtatttgga ccttgcttgt catcttgtca gggaaagggt tctaatgggg      4440
     cagatcaaga ctcttcatgt gcagactgaa catcaattgg cagatgcgtt aactaaacct      4500
     ctatatccta ctttattttt gagactcatt cgcaagatgg gtgttattaa catatacact      4560
     ccatcttgaa ggggaa                                                      4576
//
ID   ATHAT1      repbase; DNA   ; ATH   ; 4060 BP.
XX
AC   .
XX
DT   03-NOV-2000 (Rel. 5.9, Created)
DT   03-NOV-2000 (Rel. 5.9, Last updated, Version 1)
XX
DE   ATHAT1 autonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Interspersed Repeat; HAT superfamily;
KW   Autonomous DNA transposon; ATHAT1; Atac1.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4060
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
RN   [2]
RP   1-4060
RA   Kapitonov V.V., Jurka J.;
RT   "ATHAT1.";
RL   Direct Submission to Repbase Update (00-NOV-2000).
XX
CC   [2] (Consensus)
XX
CC   The consensus sequence was reconstructed based on five copies
CC   present in the genome. They are 98% identical to the consensus
CC   sequence and are flanked by 8-bp target site duplications.
CC   ATHAT1 has 20-bp terminal inverted repeats and encodes the
CC   725-aa ATHAT1p transposase.
CC   CDS join(674..1427,1520..2454,2566..2893,3756..3913).
XX
FT   CDS           0..0
FT                 /product="ATHAT1p"
FT                 /translation="MTQRKKVCEPEASKTQRRSKGDEASASKTERRKKSE
FT                 AEAPKKPKKVFEISDEDEDDDDEEDDDGDNGADDVDDDEDNGKSSKPKKR
FT                 RQYSKVWNDFIVIKKVNHLGKSEERAMCKHCKSDYAYNAHKNGTNTYRRH
FT                 LQICKLVPRNGDISQMMVNAEAKFQARKIDQSVFRELVAKTIIQHDLPFS
FT                 YVEYERVRETWKYLNADVKFFSRNTAAADVYKFYEIETDKLKRELAQLPG
FT                 RISLTTDLWSALTHEGMNLAMEILGKLKDWGIEKKVFSITVDNAGNNDTM
FT                 QEIVKSQLVLRDDLLCKGEFFHVRCATHILNIIVQIGLKGIGDTLEKIRE
FT                 SIKYVKGSEHREILFAKCMENVGINLKAGLLLDVANRWNSTFKMLDRALK
FT                 YRAAFGNLKVIDAKNYKFHPTDAEWHRLQQMSDFLESFDQITNLISGSTY
FT                 PTSNLYFMQVWKIQNWLTVNESNQDEVIRNMIVLMKERFDKYWAEVSDIF
FT                 AIATVFDPRLKLTLADYCFAKLDISTREKRMKHLRAQLRKLFEVYENKSN
FT                 AVSPTTESREDVTHDDETAKGNFSNYDDFFAFRKANVVANGKSTLDMYLD
FT                 EPAMNVKGFESLDILNYWKDNGPRFGKLASMACDILSIPITTVASESSFS
FT                 IGTRVLSKYRSRLLPRNVQALICSRNWLKGFESYENVSSICTADTCVAMS
FT                 EWVERPSSNTALDEILPCTDNATAQESLMRSREMPAGRP"
XX
SQ   Sequence 4060 BP; 1238 A; 666 C; 910 G; 1246 T; 0 others;
     tagagttgtc aagcgggccg ctagcccgcg ggctttgtcc aagtagccca tggcggagcg        60
     ggcttggacg ttgatttttt tgtccacaaa ttagcgggcc tcgcgggcag gcccattacg       120
     gactgcggat tatagcagac aagcccgttg cggactgcgg gtatgcgggt agcccacgaa       180
     agaaaaacca actcttttaa aacccttcat ttctcataga ggctttcaaa ccttttctct       240
     ctattagagt ttcttgtgca gttcaaaccc tagaagtagc agttcacgct caattgctta       300
     acaaggaaac tgaaaagtca ttctctatct cttcaagttt cttttttacg atcattgaag       360
     cttcttagat tcagatttca gatcaaaaca gagcatctaa cacttgtaat ggtatgttat       420
     ttgtgactac acataaacaa ttagatgttt tacttttgtt tgattgattt gctagtcttg       480
     actagttttt gtattttgtt aatgatagga tccgttggat tctgttgatg ctgagtattt       540
     gagatcatta gatgtggaat ctcggagagt cattgagttg gaacaagcta gatatgaaca       600
     acaacaagct aatgatgaag caggaggatc taaaaagctg aaaagaaaac tgagagatga       660
     aacaggaaca cctatgacgc agaggaaaaa agtgtgtgaa ccagaagcat caaaaaccca       720
     aagaagaagc aagggtgatg aagcttctgc ctctaaaaca gagagaagaa aaaagtctga       780
     agctgaagca cctaaaaaac cgaaaaaagt ttttgagatt agtgatgaag acgaagatga       840
     tgatgatgaa gaagatgacg atggggacaa tggagctgat gatgttgatg atgatgagga       900
     caatggaaag tcatcgaaac caaagaagag aaggcaatac tcaaaagtct ggaacgattt       960
     catagtgatt aaaaaggtta atcatttggg aaaaagtgaa gaaagagcta tgtgcaagca      1020
     ttgcaaatca gattatgcgt acaatgcaca caaaaatggt acgaatacat atcgacgtca      1080
     tttgcaaata tgtaagctcg tgcctagaaa tggtgatatt agtcagatga tggtgaatgc      1140
     agaagcaaaa ttccaagcta gaaagataga tcaatctgtt ttccgggaat tggtagctaa      1200
     gacaattatc caacatgatc ttccattttc ttatgtggag tatgagagag ttagagaaac      1260
     gtggaagtat ttaaatgcgg atgtcaagtt ttttagtcga aacacagctg ctgcagatgt      1320
     ttataagttt tatgagattg agacggataa gctgaagaga gagttagctc aacttcctgg      1380
     aaggattagt ttaactacag atttgtggtc tgcgctcact catgaaggtt atatgtgtct      1440
     tacagcacat tacattgaca gaaattggaa gctcaataac aagatcctag tttttgtgca      1500
     ttccctccac cgcatacagg aatgaactta gcgatggaga tacttgggaa attgaaggac      1560
     tggggaattg agaagaaagt tttctccatt acggtagaca acgcgggtaa caatgacaca      1620
     atgcaagaaa ttgtaaaatc tcagcttgta ctccgagatg atttgttgtg taaaggagag      1680
     tttttccatg ttagatgtgc aactcacatt ctcaacatca ttgttcaaat tgggctgaaa      1740
     gggattggtg atacattaga aaaaattaga gagagtatca agtacgttaa aggatcagaa      1800
     catcgtgaga tcttatttgc aaagtgtatg gaaaacgttg gtattaatct gaaagctggt      1860
     ttgttgttgg atgtggcaaa taggtggaat tcaacattca agatgcttga tagggctctg      1920
     aagtatcgag ctgcatttgg taatctcaaa gtcattgatg ccaaaaacta caaatttcat      1980
     cctacagatg ctgaatggca tcgactacag caaatgagtg attttttaga gtcgtttgat      2040
     caaataacca atcttatatc aggttcgaca tatccaactt cgaatttgta ttttatgcaa      2100
     gtttggaaga tccaaaactg gttaacagtg aatgagtcca accaagatga agttatcaga      2160
     aacatgattg tcctaatgaa agagaggttt gataagtatt gggcagaagt aagtgatatc      2220
     tttgcaatcg ctacggtatt tgatccgagg ttgaagctta cacttgcaga ttattgtttt      2280
     gcaaaactag atatcagtac tcgtgagaaa agaatgaaac atttgcgtgc tcaactacgt      2340
     aaactttttg aagtttatga gaacaagtcc aatgcggtat cacctacaac tgagtctcgt      2400
     gaagatgtta cacatgatga tgaaactgca aaagggaatt ttagcaatta cgatgtaagt      2460
     ttcttatgtt ttgtttttgt tagttaatat gcagtttttt ttatgaaaaa cagcaagtca      2520
     ttagttttta tgttatgtta ttttgatttc ttatctttgt tataggattt ctttgctttt      2580
     cgcaaagcaa acgttgttgc caatggaaag tcgacgttgg atatgtactt ggatgaaccg      2640
     gcaatgaacg taaaagggtt tgagagttta gatattctca attattggaa agataacggt      2700
     ccacggtttg gaaaattggc ttccatggct tgtgacattc taagcattcc tattacaaca      2760
     gttgcgtccg aatcatcgtt tagcatcgga actcgagttc taagcaagta tagaagtcgt      2820
     cttttaccga gaaatgttca agcattaata tgcagtcgca attggttaaa aggttttgaa      2880
     tcttatgaaa atggtaagta agttgttttt cataagtttt atagtcacac aatcttagtc      2940
     tatgaattaa cattgttagt ttgtatgata tttgtagagg agtatgaaaa atttgatgct      3000
     gaagatgaga ctctaccttc cttccagtcg cttgtggatg atgcagatgg atgttgagtt      3060
     gcagatttta ttttaagttt gatattcatg tttggatttg agtttaagtt catgtttcag      3120
     ttatcatgtt tgcgtttaag aagttgcagg tctttctctt gacttaagtt cattttctgt      3180
     ttcacatttg agtttaactt gttacaatta aggtttgaat atgagtttaa gttcagatta      3240
     aggtttacaa atgagttgca agatgagaca cgacattgtt ccttttggga tattttggat      3300
     ttgagtttaa gttaaggttc tgatagcacg atttcgcagc ttagagctat ctcagattat      3360
     cttgcttcag ccaagcaggc tgcagttctt caggttcttt tacctgcaaa tgtacaaact      3420
     gaaatcgatc agatcggagc gaaactggat tcttctgtag ctactatcac tgagaaatcg      3480
     actagtaact ccaatcacat aagacatttc cttgattctg tgtaacaaac tcctcctaac      3540
     agtctatctg ttacagaatc tttggatttt gaaaaacaaa tgtataatag tcatttctgt      3600
     actcgcagga gagtggcgct tatcgtagtt tcaatcgtca tgcttgtggt gacttttctt      3660
     ggtctcggta atgttttcat ctttgactac atgtttctca actatcaact aatgtattga      3720
     ccttagtgat cttgttatca tttcttctcc tgcagtttct tcgatttgta ctgcagacac      3780
     atgtgtggca atgagcgaat gggttgagag accatcaagc aatacggctc tggacgagat      3840
     attgccttgt acagacaatg ccacagctca agaatccttg atgcgtagca gagaaatgcc      3900
     cgcgggccga cccgtatatc cgctgggctt tgcgggccgg gcttggacac tgataatttt      3960
     gtctgcggtc ctaaacgggc caacccgtcg cggcccgaaa aaagaaagcc cactgcgggg      4020
     cgggctagat gggcgcgggc cggcccgtct gacacctcta                            4060
//
ID   ATMU3       repbase; DNA   ; ATH   ; 4853 BP.
XX
AC   .
XX
DT   18-SEP-2000 (Rel. 5.08, Created)
DT   18-SEP-2000 (Rel. 5.08, Last updated, Version 1)
XX
DE   ATMU3, an autonomous DNA transposon - a consensus sequence.
XX
KW   MuDR; DNA transposon; Interspersed Repeat; TIR;
KW   Autonomous DNA transposon; transposase; DNA-binding protein;
KW   MUDR superfamily; ATMU3.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4853
RA   Kapitonov V.V., Jurka J.;
RT   "ATMU3.";
RL   Direct Submission to Repbase Update (00-SEP-2000).
XX
CC   [1] (Consensus)
XX
CC   ATMU3 is an autonomous DNA transposon from MUDR superfamily.
CC   Its copies are flanked by 10-bp target site duplications.
CC   There are 5-10 copies of ATMU3 in the genome, they are ~99%
CC   identical to the consensus sequence. The consensus sequence
CC   was reconstructed based on 4 copies; therefore, it may
CC   represent well enough features of the active ATMU3 transposon.
CC   ATMU3 has ~280-bp terminal inverted repeats and encodes
CC   two proteins, ATMU3p1 and ATMU3p2.
CC   ATMU3p1 is a 949-aa transposase encoded by 5 exons (390-2198,
CC   2293-2471, 2511-2696, 2912-3269 and 3338-3655):
CC   MRIGSPMLHESENLVGDGVEAPPRGERDEIGEEVGGETNVVSESCGGEDGAQDAAKATPE
CC   GEADRIGEEARGQANVVSNVDVADVAEVRSPLRRSKRRQIRLEEEAHDAVEPMPEGEANQ
CC   IGEEARGQSVDVADATAVCSPLRRSKRRQNRLEEEADVAVEESTRREIGQEEEEALGETS
CC   CGGEEEAHDEAQESGVAVADAVEVRAPLRRSKRRRIRDEEEEDLEAEVPALDEDDDCAVQ
CC   GDEDCDEVDDAVDTNREEDDTAGLGVEEDGNLDMERDFPEANGEEEASDNDSGDDIWDED
CC   KIPDPLSSDDEDDDRVEAARNDLGDPEILLALEKTYNSPEDFKLALLMSSLKTRYDIKLY
CC   NSEAMVVAAKCVYVSDEGVECPWRVRCSYEKRKHKMQIRTYYNEHTCVRSGHSKMLKVSS
CC   IGFLFEERLRVNPKLTKHEMVAEILREYKLEVTPDQCAKAKTKVLRARRASHDSHFARIW
CC   DYQAEVLLRNPGTEFNIETVAGAVIGSKQRFYRLYICFQAQRESWKQTCRPVIGIDGAFL
CC   KWDIKGHLLAAVGRDGDNRIVRIAWSVVEIENDDNWDWFLRQLSTSLGLCEMTDLAIISD
CC   KQSGLVKAIHTILPQAEHRQCSKHIMDNWKRDNHDIELQRLFWKIARSYTVEEFNNYQAD
CC   LKSPITWSRAFFRTGTCCNDNLNNLSESFNRTIRQARRKPLLDLLEDIRRQCMVRTAKRF
CC   IIADREKKKVESYVNDYYTRNRWRETYFRGIRPVQGMPLWGRLNRLPVLPPPWRRGNAGR
CC   PSNYARRKGRNEVASSSNPNKMSREKRIMTCSNCLQEGHNKKSCKNATVLSPPKRPRGRP
CC   RINEEPQGYVEGSDGHDNGSQGQGNVLQGQENVSQGQNNGSQGQNNGSQTQSQRGRGRGT
CC   QRQRGTTRGAQRQRGRGRGTSQVSEQPQGEAQPQGLAGLAPWFECSRGT
CC   ATMU3p2 is an 154-aa putative DNA-binding protein encoded by
CC   the second strand (exons 4530-4333, 4279-4046 and 4028-3996):
CC   MSCNSRNSSGESGGCNSGMISNAEAGGFKSRGFPVKCKCGLEVVMFTSSTAKNPGRPFFR
CC   CKSCEDLEMELQDHLFKWVEECMYEEVVDALPKISSIDNEIINAKAEVAVEIANLKELMI
CC   ELKEDGMWSKREIQRWKKMTKVCLCDCNCNINVL
CC   ATMU3p2 includes a conservative motif (aa positions 37-80)
CC   CKCGLEVVMFTSSTAKNPGRPFFRCKSCEDLEMELQDHLFKWVE present at C-terminus
CC   of DNA topoisomerase III in human, mouse and drosophila, and
CC   at C-terminus of polyproteins encoded by ORF3 in banana streak
CC   and sugarcane bacilliform retroid viruses.
CC   There are ~100 highly diverged copies of ATMU3p2 encoded by
CC   different families of ATMU-like DNA transposons and inserted
CC   in the genome.
XX
SQ   Sequence 4853 BP; 1557 A; 877 C; 1108 G; 1311 T; 0 others;
     gggaaaaatg ttatttaata cctcaactta caaaaaatgg ccaaattaac cgtgaactcg        60
     tgaaatggcc gttttaactc tcaacaaaaa gttgacttct gttttaactt tcaagtttgc       120
     gttgactcgg cctaattaac caccgttaaa aatccttcta acagcgtaat tgacagccgt       180
     tttagtccgt taagcatctg ttactatagt cttacgacgt cgttttcgtg ctaaagagaa       240
     atcaaaatcg agaatagaaa ttctcaaaac aaaatcaatt accctaaacc caaatcgaaa       300
     cctaatcctg cccccaaaat caaaatcgaa accctaattg cttcaattcg ttttctgaaa       360
     tgccattagt tagaaagaat ggcgtcgtta tgaggattgg atctccaatg cttcacgaat       420
     cagagaattt ggtgggagat ggagttgaag caccaccgcg aggagaaaga gatgaaattg       480
     gagaagaagt tgggggtgaa acgaatgtgg tatctgagtc ttgtggcgga gaagacggag       540
     cacaagatgc agctaaagca acgccggaag gagaagcaga tcgaattgga gaagaagctc       600
     gaggtcaagc gaatgtagta tcaaatgttg atgtggcaga tgtggccgaa gttcgttctc       660
     cacttaggcg aagtaaacga aggcaaatca gattggaaga agaagctcac gatgcagttg       720
     aaccaatgcc ggaaggagaa gcaaatcaaa ttggagaaga agctcgaggt cagtccgttg       780
     atgtggcaga tgcaaccgca gtttgttctc cacttaggcg aagtaaacga aggcaaaata       840
     gattggaaga ggaagctgat gttgcagttg aagaatcaac tcgtcgtgaa attggacaag       900
     aggaagagga agctttaggt gaaacgtctt gtggcggaga agaggaagct cacgatgaag       960
     ctcaagaatc aggcgttgct gtggcagatg cagtcgaagt tcgtgctcca cttagacgaa      1020
     gtaaacgaag gagaatcaga gatgaagaag aggaggattt agaggctgaa gttcctgctc      1080
     ttgatgaaga cgatgactgt gcagtccaag gagatgaaga ctgcgatgag gttgatgatg      1140
     cagtagatac taatagagaa gaagatgata ctgctggatt aggtgtcgaa gaagatggta      1200
     acttagacat ggaaagagat tttccagagg ctaatggaga agaagaagct agtgacaatg      1260
     acagcggaga tgatatatgg gatgaagaca agattccaga tcctttgtcc tctgacgatg      1320
     aagatgatga tagagtagag gcagctcgaa atgatcttgg tgatcctgag attttactag      1380
     cattggagaa gacttataac tctcctgaag atttcaagct tgctcttttg atgtcttccc      1440
     taaagacaag gtatgacatt aaactttata attctgaagc tatggttgtt gctgctaagt      1500
     gtgtgtatgt tagtgatgag ggtgttgaat gtccgtggag agtccgttgc tcttatgaga      1560
     agagaaaaca taagatgcaa atacgaactt attacaatga gcatacttgt gtgaggtcag      1620
     gacattcgaa gatgttaaag gtgtcatcta ttgggttttt gtttgaagaa aggttgagag      1680
     tgaatccaaa actcactaaa catgagatgg ttgctgagat cttaagagaa tacaagttgg      1740
     aagtgactcc agaccaatgt gctaaggcaa agacaaaagt tttgagagct agacgtgcta      1800
     gtcatgattc tcattttgct aggatatggg attatcaagc agaggtgtta ttgcggaatc      1860
     cggggacaga gttcaacata gagacagttg caggagcagt gattggaagc aagcagagat      1920
     tttaccggtt atatatttgt tttcaagctc aaagggagtc atggaaacaa acttgcagac      1980
     ccgtaatagg gatagatgga gcttttctga aatgggacat aaaaggacat ctattagccg      2040
     cagttggaag agatggtgac aatcggattg tccgtattgc ttggtctgta gtcgagatag      2100
     aaaatgatga caattgggac tggttcttga gacagctctc tacaagcttg gggctatgcg      2160
     aaatgactga tctggcaatc atttcagata aacaatctgt tagtctctat tctataagat      2220
     tcccttcata tatctactgt aatttgagat agacaatcat actaaacttg tgtttttttt      2280
     gttgttttgc agggtttagt caaggctatc cataccattc ttccgcaagc cgagcatcga      2340
     caatgttcaa aacacatcat ggataattgg aaaagggaca accacgacat tgagctacaa      2400
     cgtctatttt ggaagatagc acgcagctac accgtagaag agttcaataa ttaccaggca      2460
     gacttaaaaa ggtacaatat ccaagcctac acgtctctcc aacttactag tccgattaca      2520
     tggtctagag cattctttag aaccggtaca tgttgcaacg acaatctcaa caatctgagt      2580
     gagtcattca atagaaccat tagacaagct aggcggaaac cactgttaga tcttctagag      2640
     gatattagga ggcaatgcat ggttaggaca gccaaaaggt ttatcattgc tgacaggtgc      2700
     aaaacaaagt acacaccaag agctcatgct gagattgaga agatgattgc tggggtccag      2760
     aatacacaga gatacatgtc cagggataat ttgcatgaaa tctatgtcaa tggagttggc      2820
     tactttgttg atatggactt aaagacatgc ggctgcagga aatggcaaat ggttgggatc      2880
     ccatgtgttc atgcaacatg tgtgataata gggaaaaaaa gaaggttgag agctatgtga      2940
     acgactacta cacaagaaat aggtggcgag aaacatattt ccgtggtatt aggcctgtcc      3000
     aagggatgcc tttgtggggt cgattgaata ggctgcctgt cttgccacca ccatggagaa      3060
     gaggcaatgc cggaaggcca agcaattatg caagaaggaa aggaagaaat gaagttgcct      3120
     cttcctcaaa tccgaacaaa atgtcaaggg aaaagaggat catgacatgc tctaactgct      3180
     tgcaagaagg gcacaacaag aaatcatgca aaaatgctac tgttttaagt ccaccaaaga      3240
     gaccaagagg tcgaccaagg ataaatgagg tttgtatatc tttcatttct attttcaaaa      3300
     attctgtttc aaaaactgat tgtaatgttt gtattaggaa ccacaagggt atgtagaagg      3360
     atcagatgga catgataatg gctcacaagg gcagggtaat gtgttacaag ggcaggaaaa      3420
     tgtgtcacaa gggcagaaca atggctcaca agggcagaac aatgggtcac aaacacaaag      3480
     ccaaagagga agaggtcgtg gaacacaaag acaaagggga acaactcgtg gagcacaaag      3540
     acagagggga agaggtcgtg gaacatcaca agtgtctgaa caaccacaag gagaagcaca      3600
     accgcaagga cttgctggac ttgcaccatg gtttgaatgt tctcgtggaa catgatatgc      3660
     tagtctcatg tttgtttttg ttgtttgaac ttgtctttat gacatatgtt tattctcggt      3720
     ttgtttttgt tgtttgaact tgtctttatg acataatcta agtcttggtt acttattgtt      3780
     gtttgcactt gtctctctat atgattagct tagtctcagt tttaagaagt tgaccttttc      3840
     tttcaaatga aattcattac cattaccaaa gctacatgtc attacatagt aaaagcataa      3900
     ccaaacacaa actaaacaac aaagacatca cattcaaact aagctcccat tcgattacac      3960
     actaataacc aagaacaaat ttctggtttt ttttcttata gaacattgat attacaattg      4020
     caatcacact aaaacaaagg cacaccaagc acactttcgt catctttttc catctctgaa      4080
     tttctctttt gctccacatt ccatcttctt tcaactctat cattagctcc tttaagtttg      4140
     caatttcaac agcaacctca gcttttgcat tgattatctc gttatcaatg ctggagattt      4200
     tgggtagagc atctacaacc tcttcataca tacactcctc cacccatttg aacaaatgat      4260
     cctgcaattc catctcaagc ttttaccgac caaacacaaa aaacatcaca ttctcatatc      4320
     aaatctactt acatcttcac agcttttgca ccgaaagaaa ggccttccag ggttcttagc      4380
     cgtgctcgat gtaaacatga cgacttcgag cccacattta cacttaacag gaaacccacg      4440
     gctcttgaaa cctccagctt cagcattcga aatcattcct gaattgcagc ctccactttc      4500
     accactcgaa ttccttgagt tgcagctcat aatgcagatt tgatcgaaaa atttgagaga      4560
     gaatgatttt tagggtttgg gttttgattt ggggattttt cagaggtttc gtcgactttg      4620
     aagtctgttg atagcacaaa acgtcgtcgt atcaccttaa cggatgttct gtaacggctg      4680
     tcaattacgc tgttagaagg atttttaacg gtggttaatt aggccgagtc aacgcaaact      4740
     taaaggttaa aacagaagtc aactttttgt tgagagttaa aacggccatt tcacgagttc      4800
     acggttaatt tggccatttt ttgtaagttg aggtattaaa taacattttt ccc             4853
//
ID   ATCOPIA43I  repbase; DNA   ; ATH   ; 7967 BP.
XX
AC   .
XX
DT   31-AUG-2000 (Rel. 5.8, Created)
DT   31-AUG-2000 (Rel. 5.8, Last updated, Version 1)
XX
DE   Internal portion of the ATCOPIA43 copia-like endogenous retrovirus - a
DE   consensus sequence.
XX
KW   LTR-retrotransposon; COPIA superfamily; endogenous retrovirus; gag-pol;
KW   env; ATCOPIA43LTR; ATCOPIA43I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-7967
RA   Kapitonov V.V., Jurka J.;
RT   "ATCOPIA43I.";
RL   Direct Submission to Repbase Update (00-AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   ATCOPIA43I is a consensus sequence of an internal portion
CC   of ATCOPIA43 copia-like endogenous retrovirus. Its long
CC   terminal repeat is deposited as ATCOPIA43LTR. The consensus
CC   sequence was derived from five copies (they represent two
CC   subfamiles). ATCOPIA43I copies are ~98% identical to the
CC   consensus sequence.
CC   This retrovirus is closer to SIRE1 from Glycine max than to
CC   other copia-like endogenous retroviruses present in the
CC   A.thaliana genome. ATCOPIA43I encodes the ~1500aa gag-pol
CC   polyprotein (approximate position 144-5093) and env
CC   (position ~ 6050-7550).
XX
SQ   Sequence 7967 BP; 2276 A; 1383 C; 1847 G; 2220 T; 241 others;
     attggtatca gagcgggtaa ccaatctgag attagtatat ctgaacaggt tagatcctag        60
     ttatggaacc aacggatgtt agtactggta caggcaaggt attactgcta gatactaagc       120
     ggtatggata ctggaaagtt cgtatgacac aaatcattag aggccaaggt gaagatgctt       180
     ggactgcagt agaggaagga tgggaacctc cgttcgatct aacagaagat gggttcaaaa       240
     tcactaaacc aaaggcgaat tggactgcag aagagaagct tcaatcaaag tttaatgcaa       300
     gggctatgaa tgctatcttc aatggtgttg atgaagacga gtttaagctt attcaagggt       360
     gcaagtcagc gaaacaagca tgggatacgt tacaaaaatc tcatgaggga acttcgagtg       420
     taaagagaac aagactggat cacattgcta ctcagtttga gtatctcaag atggaaccag       480
     atgaaacaat tgtgaagttc agttcaaaga taagtgctct tgcgaatgag gctgaggtca       540
     tgggaaagac ctacaaagat caaaaattgg ttaagaagct gttacgttgt ctgccaccga       600
     agtttgctgc ccacaaagca gttatgaggg ttgcagggaa tactgataaa atatcatttg       660
     ttgatcttgt gggaatgctc aagtcagaag aaatggaagc tgatcaagac aaagtcaaac       720
     cgtcgaagaa tattgcattt aatgcagatc aaggctctga gcagtttcag gagattaagg       780
     atggaatggc actgctagca aggaattttg ggaaagctct gaaacgtgtg gaaagaggtc       840
     agaatcgtga cagtacatcc tggagcaata aagatggaga gagatcacgt ggaagattct       900
     ccagatctga gaatgatgac tcaggaaaga agaaggaaat tcaatgctat gagtgtggtg       960
     gttttggtca cattaaaccg gagtgtccag tcaccaagag aaaagaaatg aaatgtcttg      1020
     aatgcaaagg tgtgggtcac actaagtttg aatgtcccaa caagagcaaa cttaaagaga      1080
     aatctcttat aagtttcagt gattcagaat ctgatgatga aggtgaagag ctgttaaact      1140
     tcgtggcgtt tatggcaagt tctgactcaa gcaaggttat gagtgacacg gattctgact      1200
     gcgatgagga actgaatccc aaggatgaat acagagtgct atatgacagc tgggtgcaac      1260
     taagtaagga caagctgcag ttggtaaagg aaaagctaac tctagaagca aaacttgcta      1320
     atgtgagcac agaggataag cagaaactga gtggaatcac tgttgatgga aattcacagg      1380
     actactatca aaagaaactt gactgtcttc aggaagagtg tcacagggaa agagatagag      1440
     ctaaacttct ggaaagagag ttgaatgaca aacacaaaca gatcaggatg ctcaacaaag      1500
     ggtcagaaag tctagacaag atcttggcaa tgggcagaac tgattctcaa ccaaggggtt      1560
     tgggttatca aggttataca ggaaagatca acaaggaaga aggaagagtc atcaactttg      1620
     tcagtggtgg ttcaacaagt gaaactgtgg tgagacaaag ctatactgaa ccgaagaaac      1680
     aagtgaagtc acatgttgaa acaaaaggag aatctgttgt gagaacaagg atggtgggtg      1740
     tgatttgctg cgatcattgt ggtaagagat ttcatatgag agaacagtgt tacaaattca      1800
     aagagaaagt cagaacgctg tggaatttag caaagtgcta cattgagcca tcaagattct      1860
     gcactgtgtg gattaagaag aaagatctgt atggtgatat ggaagctgaa aggtacaatc      1920
     acaagttaga aagaatgtat gaagaagagg aaatgcatta cgccagttgc tgcaatcagg      1980
     tcaacaaaga aatgcaagac gaggcaaatc ttgtttgcaa ctggaatctt tctgagttgg      2040
     atgactgcac tccacaagcc aaagtggctt atacttcagc tgtttctcaa gacaacagag      2100
     cgtggtattt cgacagtggg tgttctcgtc atatgaccgg tgtacaatct gttctaaatg      2160
     actttwctgt catcamcaat gggaaggtca cytttggaga tggtggaaaa ggaagcatta      2220
     aaggraaagg gaagatygag atagatgatc aaccgcayct gtcaaatgtg tactttgttg      2280
     agggactcac tgctaatctr ataagcatma gtcaactgtg tgatgatgac ttaactgtta      2340
     cgtttacaaa gactggatgt gttgcactyg atattgctgg maacaatgtt ctatcwggag      2400
     tttgttcagg caacaactgc tayatgtgga aagactctga agtctgtttg tctgcaatca      2460
     catccaagct wgatctgtgg catcaacgac ttggacacat gaatactcaa agcttrgtya      2520
     agattgtraa tgctgawgtt gtcagaggaa ttccaaaact tgaaggcagt acaagtgttg      2580
     tctgcaaagc ttgcagccaa ggcaaacaag ttaaagtgca acataagagg gccacgcata      2640
     ttggaactac tagtgttctt gaattggtdc acatggatct tatggggcca gttcagacag      2700
     aaagcttgag tggtaagaag tatattttgg ttctggttga tgactactct cggttcacat      2760
     gggtgagatt tctaagagaa aaatctgagg cagctgaaag tttcaagatt ctdgctttac      2820
     aacttcagac tgagaaaggg aatcttgttc aaatcagaag tgatcatggt ggagagtttc      2880
     aaaatgaaga atttgagaaa ttctgcagaa ttcaaggaat cagacatcaa ttctctgcac      2940
     ctagaacacc acaacagaat ggtgttgttg agagaaagaa cagaacttta caagaaatgg      3000
     ctagagctat gattcatgga aacaatgtgt caccaagatt ctgggctgaa gctgtcaaca      3060
     ctgcttgcta catcgtgaat agggtgtacg taagacctgg gacaagcaca actccttatg      3120
     agatatggaa gggaaggtca ccaaatctgt gctacttcca tacttttggt tgtgtgtgct      3180
     atgttctgaa cgataaggat catcttggaa agtttgatgc aagaagtgat gaagggatat      3240
     ttctgggtta tgccacaaac agtatggcgt acagagtcta caataagaga ttgaagagag      3300
     ttgaagaatc agttaatgtt gtgtttgatg acaagcatcc tacaagactc ttcacggtgg      3360
     aacaagatga tgatgagcaa gtagaggaaa caagacattc aacatctctt gttgaatctg      3420
     gaacttcaaa agatgttgaa cagactactg aaccacgtac atcatcatct cgcctcacag      3480
     ttcchaaaag tcactcagaa actgacgtta ttggagagtt ggatggagac agagttacca      3540
     gggggataaa gatgaactac agagatatga ttctgtttac ctgttttgtg tcaagcattg      3600
     agcctaacaa cattgaaatt gccttagaag atgaattctg gtaccaagct tgccatgaag      3660
     aactaaatca gttcagtcgt catgaagtat gggatttagt tccaagaccg gttcatgtca      3720
     atgtggttgg tactaaatgg atttttaaga ataaaactga tgaagaaggc aatgtgacac      3780
     gtaacagagc tcgactggtt gctcagggat actctcaggt tgaaggaatt gattttgatg      3840
     agacttttgc tccdgtagct cggctggaat ctatycgtct tcttcttgga atmtcgtgct      3900
     tgytgaaaat yaaactgttt cagatggatg tcaagagtgc ttttctgaat ggagttattc      3960
     argaagaagt gtttgtgtct caacctaaag gmtttgaaga ttcwrmyttt ccagatcatg      4020
     tktacaagct taaaaaggct ctttatgggt tgaagcaagc acccagggct tggtatgagc      4080
     rtctcactyt gttcctaata gaaaarggtt tcaaacgtgg aagtgtggac aaractttgt      4140
     tcatcyttgt wgatgaaaar gacatcctca ttgtgcaaat ttatgtggat gatattgtgt      4200
     ttggaagcac aaaacagaar cttgtcwctg actttgtgga atccatgacc aaagagtttg      4260
     agatgagyat ggttggagag atgaactact tyctkggtct acagatyaaa cagactgatg      4320
     aaggagttca tatctctcag tctacgtatg ccaargggtt gattcagaga tttggratgc      4380
     agacagctaa gacctcaaaa actcccatga gtgctactgc taaactgtct gcagatgaag      4440
     ctggtctgag tgttgatgag aaghtgtatc gtggratgat tggsagtctt ctgtacttra      4500
     carcaagtag rccwgatctg tgtttcagtg tgggtgtgtg tgccmgwtat caggctaatc      4560
     caaagcagtc wcatctgaat gctgtgaaay ggattctcaa atatgtkaaa ggtacaaccg      4620
     atgttggwyt gttttaytct aaacaaacta atcaaaatct tgttggattc tgtgatgytg      4680
     attgggcagg aaayctggat gatcgaagaa gyacaacagg agggtgtttc tttttgggaa      4740
     acaacttagt ytcatggcay agcaagaaac aaagctgtgt atcyttgtcc actgcagaag      4800
     ctgagtacat tgcwctaggg agctgytgya ctcagttgct atggatgaaa cagatgcttc      4860
     tkgaytacgg tatgacatct aacaccctgc ttgtgtactg tgataatatg agtgcaatta      4920
     acatatcwaa gaatcctgtk caacactctc gwayraagca yattgacaty agacaccatt      4980
     tcattcgtga gcttgttgaa aacaagattg ttgagatctc tcatgtttcc tctgaaaaac      5040
     arttagctga tatatttacw aaaccattgg atttgaacag tttcttgaat ctgaaaaaat      5100
     ctattggtct gagtgaatac taatgtgtct tggtgttaaa gctattgcaa yaggttcctt      5160
     tgtacagagt tgcakyagct ttgtgttttc atcmatatgt atatatatct attgtgtctg      5220
     tctttctggc acttcatttc aggaaaatag ctgctcttca tgctcttcct caatgaagtt      5280
     tccaaaaagg atgtgtstgt ggtgtgtaat aataataaaa aaaaaggcaa aaagaaaaaa      5340
     aaaaaggccy raargaatga acaaatgaaa gttcaaaara aaaaaaaaam aaaggwamat      5400
     gtgtgttggc aggaaaggga ttggtattct ttcttmtctt tggggtatat atgtatctat      5460
     gagtaccccc tcaaaacaty gttcttcatt acaggctcta ccaatccccc tcgccgtktt      5520
     rmccacacac atcatgaggt trcttckwtg gagagtatga cgagtgtaga ctawcctgyy      5580
     wtgatcagtg tgtatggttc atctcactgg gccaggaagc tgytattttc tccatactaa      5640
     aagtaagcta tgcacctctg tactttggaa tytgtccttc tcgcttkrat gmawtkcrca      5700
     kgtgggttcc ttgmctwstt tagaagtatc ttyaagctat atagtatata trtmtatatm      5760
     twwagwttat gstatgtttt atstttyaga ggatgacttg atgagatctc acattcagtt      5820
     tgaatcacag ttcttgaatg acagtggytg ttaatattca agtgttgatt tggktgaatt      5880
     tgtggttcta tatggtytag tcytasatta atgttgcaat catattatgt acatatgttg      5940
     ggtgtytryt aygtstctgg rtttctgttg tgawttgktt ttgggcctgg tataaggccc      6000
     tgtsarttgt ttaacggatc tggtttagtg ttttgcagcc tgtcttggtt ttcgtgytgt      6060
     ttttagggtt tcccttgawg ygctcgtgcy wtttaaacmw agcagctcyc acagaagkct      6120
     cattctcctt ytckgctact caaacctcaa aattcaaagg gtytctttct ctawaaacwc      6180
     aagtcaccat gaatcaagaa gcgacctcgt tgactggagt ctctggtgct ggtcagcctt      6240
     ccgctgcgac tccttctgac cctccaccgc ctccgkytgy tccratgttc attcccaaga      6300
     ctgaaccagg catctgcatg tcyaagaaaa ccaagtccaa ggtctctrcw ccgwctcagc      6360
     gcaagagaca gtgtackgct gcwwctkcma agwccagatc taaagcgcct gctcctgctc      6420
     tccgacgkyt gtcwagcagg aartccaacc gatctgcmtc tgctgctgga caractgaag      6480
     aacwtgtcck tgastcttca gatctgcaag atggtgatgt yaccgagatt gctccgcctc      6540
     tctttctgtc ycgktaycra gagaaccgtc ggcttctykc tgytcgtgay cgtaagtayc      6600
     ckgagctcaa attyccatcr gagactccyt acartarctg ytttctkact gaggaaggwc      6660
     ttgggcgcta caaggtcatc gggrrtcgmt gcttcaacga catgcgttty cttcctctkg      6720
     atggaaacaa cactgcgagt actcwrcaac tyctctycam tgctggtctg ctycctactg      6780
     tcacagarat ygactcttat gtgcawgagg ttgtcatgga gttctatgca aaccttcccg      6840
     atggtgaaga aggtgatcaa cttgcctact ccgtgttcgt tagaggcaac atgtatgaat      6900
     tctccctggc tatcatcaat caaatgtttc agcttcctaa tccttcmtat ccgctgrayg      6960
     gtatgtctga gattcaagtt cctgagtcca tggatgaagt tgckrttgct ctgtcaaacg      7020
     gcaaagccaa ctcytggaag atgctcacwt ctcggytgtt atctcctgag mtmgctctgc      7080
     tcaacaagat ctgytgtcac aattggakkc ccacwgtgaa ccgmtctgtt ctgaarccgg      7140
     agaggrtsac tctgctttac atggtggcca aagctctacc kttcaactty ggcaaactca      7200
     tctttgatga rawtytgggc gtgttcgaat gcagttgcga acccctcctc tactctccgw      7260
     cttgtgcttc cgaacctgat tgatcaaatg ytgcgctttc agcgcattgt ccgctctgat      7320
     gaaggagata ccacktcgtc tgcaccgttg aagttcacca tggaagtgaa acctgttcct      7380
     gtgctacagt ctgacagtcc aaccttggat gcagctctgg agaccctcat tgcatctctc      7440
     acaacgatgc gtgttcgtct dgcaggtaag cctctctcac tcaacttaca ctctgttatc      7500
     ttttgagaat ggttttttat atgagtgtgc actcaagcag ggggagagta ttctgatgtg      7560
     tcgtactctg ttccggatga tgtgggagat gagaatgtgg aggaagagga cgatgatgat      7620
     gagttagatg acaacactta attgcttagt cctggtcgtt ttttagttgt gcattgtgtt      7680
     agggggagtt tgtccctgat tgtttttgtg tgtttgtgaa aactccttga tcttgttctt      7740
     tatcggcttc ttatcggatc ttctgtgtgt ttaatgattg gtcttatgta tggaaccaag      7800
     aactcatttv tgtttcatgt ttaaatggtt atgtcttttg gcagtagttg cttaaacttg      7860
     agcctttggt ttctatgttt ggtatggaat attgcttggc ttgtattgtg gtctctactc      7920
     ttttgcagat tacttgaggt gtcacactca gataaaaagg gggagat                    7967
//
ID   ATHAT3      repbase; DNA   ; ATH   ; 4184 BP.
XX
AC   AC035249; AC0035249;
XX
DT   29-JAN-2001 (Rel. 6, Created)
DT   29-JAN-2001 (Rel. 6, Last updated, Version 2)
XX
DE   ATHAT3 autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; HAT superfamily;
KW   Autonomous DNA transposon; ATHAT3; ATHATN3; Atac3.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4184
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
RN   [2]
RP   1-4184
RA   Kapitonov V.V., Jurka J.;
RT   "ATHAT3.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
DR   GenBank; AC035249; Positions   92113   96296.
XX
CC   ATHAT3 is a recently active autonomous HAT-like DNA transposon.
CC   There are three copies of ATHAT3 present in the genome.
CC   They are ~96% identical with each other. Only this particular
CC   copy preserved nearly complete transposase, two other
CC   copies harbor only C-terminal portions of the transposase.
CC   ATHAT3 has 11-bp terminal inverted repeats and encodes the
CC   749-aa ATHAT3p transposase. ATHAT3 is flanked by 8-bp target
CC   site duplication.
CC   DNA transposon ATHATN3 is a non-autonomous derivative of ATHAT3.
CC   CDS join(260..356,1205..3350).
XX
FT   CDS           join(261..356,1205..3350)
FT                 /product="ATHAT3p"
FT                 /translation="AYQHKSQQAGNPNSFVSAVSFFREVKNSTRSEMDSS
FT                 ANPNNTESNTKGNEDEGRTRPIDNSKGKRKSDVADDGDSANPCKPKKKLQ
FT                 TRSWVWDHFTRKDGDDDQCKCHYYKRFFGCSTKSGTSNLKKHLDCCKHYS
FT                 AWKGRQSQNVINQEGNLQSGKVSKEVFREATNEMLVLGQLPLSFVESVAW
FT                 KHICSKANLYKPHSRRTATRDIILMNVARKASLKDLVSANKRRVSLTTDI
FT                 WTAQATGASYMVITVHFIDEYWRLRKFIIGFKYIADHKGATISRVLLECL
FT                 TEWGIERIFTITVDNATANTSALRKFQRALQSQRADSLVLNGDFMHMRCC
FT                 AHIINLIVKEGLHKLGNHVEAIRNGVLYVRSSTSRCDSFEQKVVTGKMTR
FT                 GSLPLDVKTRWNSTYLMLTRAIKFKVAFDKMEAEDKLYNDHFLEVVDGEK
FT                 RIGPPTTIDWREVERLVKFLGLFYTATLVVSASSIVCSYKCYGEIVTIEK
FT                 NLLGMTHSYDKELREKAVEMREKFDKYWDGQKNINRMLIIASVFDPRQKM
FT                 EFAKMCFEKLYGVDTSEAKEMYNSVYDVMKAMLKEYTVIFKGPNTQSSQS
FT                 NPPSSTAARDTFACELAEDSNVEFERMDRSYKEMVNEIRVTDPKDELDIY
FT                 LKAEVENPKTLPGMEWDVLSWWRLNSQKYPVLSEIARDVLAMQVSSVASE
FT                 SAFSTSGRLLEPSRSCLTHYMVETLVCLEQWLKSEIKLSENTFLTNAQLL
FT                 ADIELLDKLEKX"
XX
SQ   Sequence 4184 BP; 1239 A; 680 C; 844 G; 1421 T; 0 others;
     taggcctggg caaaataccc gaacccgaaa atccgaaccg aacccgaccc gtaagatccg        60
     atccgaatgc actttggttc cctgcctaat acccggtcgg atctttctct tttgtaactt       120
     cggttctggg ttcgggttcg ggtaataccc aagaaccgaa agtacttttc tcgatccgaa       180
     cttatataca cacaatagca ttaaccctta cttgccttag cttgttcttc ttcccaattt       240
     ttgatttatt aaaccctaga gcgtatcaac acaaatcgca acaagctgga aaccctaact       300
     catttgtttc tgccgtctca ttcttcagag aagtcaagaa ctcgactcga tccgaggtac       360
     ttttcatttt tctacttctg tgattttgct tttgtttctt tgagtcactg attcaaatat       420
     gtagtttata attgtaattt cgttttggtt ttgtatttct ctgttgtatt cttagttgat       480
     ttcttctaat ttatctgttt tcattagtta aatttttcaa tttatttgat tctatttttg       540
     tatctgtgga gaaaaaaaat ctgagtttgt gtgagttttg atctccaaat tttcatctct       600
     taccaccaat tgatctgttg tgcatcttaa tttttttgaa tataaattta caagagcatc       660
     acttacccaa aagcatcgac tccctcagat tcaaattttg gtgatttagc tcaactttag       720
     gctcatctac accacttcta actcaaacgt tatattctat taccatgctc tgtttttttt       780
     taagttatag gactctgttt taagcatcga ctttgtttct tttaagtaag cttgtaaata       840
     taccttcata ttttgatata taacattcac attttatcaa aataaatttg tccgactctc       900
     ttttatatgt tgacagttgt gtgtgtgtat gtgtttgatc caattgtttt aaaattatta       960
     atagtaagtt cactggatcg tgaataatat agtttggtat gtatgcatcc aagagtctta      1020
     tagactatta attcattaat tcctagtatg catccaacgt gtgatagatt gcattattaa      1080
     gtgtaactag actattaagt tatagtttca tgctagtgct gcaacgtgtg atagcttact      1140
     ttattaagta ttattcttat tcaattgtta accgattatt gtttatattt tttttctttt      1200
     gcagatggat tcttcagcaa atccaaacaa tactgaaagt aacacaaaag gaaacgaaga      1260
     tgagggtagg actcgaccta ttgataacag taaagggaag agaaaaagcg atgtcgctga      1320
     tgatggtgat agtgctaacc cttgtaagcc aaagaagaag ttgcaaacaa ggtcttgggt      1380
     ttgggatcac ttcacgagaa aagatggtga tgatgaccaa tgcaaatgtc attactacaa      1440
     gaggttcttt ggatgttcaa caaaatcagg gacttcaaac ttgaagaaac atttggattg      1500
     ctgcaagcat tactcggcat ggaaaggacg ccagtctcag aatgttatta atcaagaggg      1560
     aaatctacaa agtggaaaag tttctaagga agtttttaga gaggctacga atgaaatgct      1620
     tgttttggga caactgccac tttcatttgt tgaaagtgtt gcttggaaac atatatgcag      1680
     caaagctaat ctctacaagc ctcattcaag aagaacagct actagagata ttattttaat      1740
     gaatgtggcc agaaaagcat ctctgaagga tttggtttca gctaataaac gtagagtgtc      1800
     tcttacaact gacatttgga ctgctcaagc tacaggtgct agctacatgg taatcactgt      1860
     gcatttcatt gatgagtatt ggcgtttaag aaagtttatc attggcttta agtacatcgc      1920
     agatcacaag ggagctacaa tatcaagggt tctacttgag tgtttgactg aatggggaat      1980
     agagaggata tttaccatca cagttgacaa tgcaactgcc aatactagtg cactcaggaa      2040
     gttccagaga gctttacaat cacagagagc tgattctttg gtgttaaatg gagattttat      2100
     gcacatgagg tgttgtgctc atatcatcaa cttgattgtg aaagaaggtc tgcacaaatt      2160
     gggtaatcat gtggaagcca tccgcaatgg agtgctatat gtgagatctt ctacttctag      2220
     atgtgactca tttgagcaga aagttgtgac aggtaagatg acaaggggga gtttgccttt      2280
     ggatgtcaaa acaaggtgga attccaccta tttgatgtta acaagagcaa tcaagtttaa      2340
     ggtggcattt gacaagatgg aggctgaaga caagttgtac aatgaccact tcttggaagt      2400
     agtcgatggg gaaaagagga ttggaccgcc tactacaatt gattggaggg aagtagagag      2460
     gttagtaaag tttcttggct tattctacac tgctactttg gtcgtttcag cgtcaagtat      2520
     tgtttgctct tacaagtgtt atggtgagat agtcaccata gaaaaaaatc tgctgggaat      2580
     gactcatagt tatgataaag agttgaggga aaaagctgtt gaaatgaggg aaaaattcga      2640
     caagtattgg gatggacaaa agaatatcaa taggatgttg ataattgcta gtgtgtttga      2700
     tcctagacag aaaatggaat ttgctaaaat gtgctttgag aaactttatg gtgtagacac      2760
     ttcagaagcc aaggagatgt ataattctgt ttatgatgtc atgaaggcta tgctgaagga      2820
     gtacactgtc attttcaagg gaccaaacac acaatcatca cagtctaatc cgccttcatc      2880
     tactgctgcc agagatactt ttgcatgtga gttagctgaa gatagtaatg ttgagtttga      2940
     aaggatggac aggtcatata aagagatggt taatgaaatt agggttactg atcctaaaga      3000
     tgagttagat atctatctga aggcagaggt agaaaatcct aagactcttc ctggaatgga      3060
     gtgggatgtc ttgtcttggt ggagactcaa tagtcagaag tatccagttt tatcagaaat      3120
     tgcaagagat gtacttgcaa tgcaagtgtc atctgtcgca tctgaaagtg cttttagcac      3180
     cagtggtcgt cttttggagc caagtagaag ctgccttact cattatatgg tagagacttt      3240
     ggtttgcctt gagcagtggt tgaaaagtga aatcaagctg agtgaaaaca cttttctaac      3300
     aaatgcacaa cttcttgctg atatagaatt acttgataag cttgagaaag gtaactttat      3360
     ctatgtagtt tactagtttt agttttagat gttgtttgaa aactctctta tgttctaaca      3420
     caacttgggt gttgattgaa tctttttcag agtttcaaac tgaagtgaac ttggactaaa      3480
     agactaatca aggaaacgac tacaaggtaa cttcatcact ccattttgtt ttcttttact      3540
     tctgaacttg gtttatagct caatgttaat atactagact catgaatcaa cgatcatttc      3600
     gtatttgact tttacttggt ttatggttta atgtttactt atggtttttt atttttcaac      3660
     tgagcttatt tggttttgat gtaacaggaa caagtcatga agaatctatc atgtttggat      3720
     gttgctttgg atttgaactt ctttctttac tttgaatgct ttggatttga ttctgaacga      3780
     tggttttatg tcttgctttg gatttgaact tctttcttct atttggatgg ttttatttgg      3840
     atgttttgaa tcttgctttt tggttgaacg tgtgaaactt ttattatgtc atgctttatt      3900
     gattttactt caagtttttt ttattacaaa tttacaggtt ttatggtata tgtggttagt      3960
     atcaagtatg ttcgggtagt tatgaactag tatccaataa tattcggtta cttttcggat      4020
     tttcaatgga agtaccaata cctacccaaa cccaaaatat accggaccga acccgaaccg      4080
     aagttttcaa atacccgaac ggggtctaaa attatagttc cgaaaaatcc gaacccgaaa      4140
     gaaccgatcc gaacccgaac cgaataccca aacgcccagg acta                       4184
//
ID   ATGP2LTR1   repbase; DNA   ; ATH   ; 1287 BP.
XX
AC   AC006420;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATGP2 gypsy-like LTR retrotransposon.
XX
KW   GYPSY superfamily; LTR-retrotransposon; ATGP2I; ATGP2LTR; ATGP2LTR1.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1287
RA   Kapitonov V.V., Jurka J.;
RT   "ATGP2LTR1.";
RL   Direct Submission to Repbase Update (00-MAR-1999).
XX
DR   GenBank; AC006420; Positions   93237   94523.
XX
SQ   Sequence 1287 BP; 342 A; 269 C; 380 G; 296 T; 0 others;
     tgtaacgccc gcgatcctca ataggatcgt tggctaggac ttggtccgag agatgaaggt        60
     ggagtctcgg acaagtgaga aggagctggc cataagctcg gacaaagggg aaatcatgca       120
     ggctaagcta ggatcgtaaa gaaatcagct gggtcagctc gcccaaagct caagctcagc       180
     tggaaggact gacggttact caggtcgagt gacagtccag ctcgggcagc tggacgagtg       240
     acggttgagc tcgaggtagc tggacgagtg acggatgagc tcgaggtagc tggacgagtg       300
     acggactagc tgggcggtta tgggcgaaga gatacaactc ttcggaaagg tgcaactctt       360
     cggaagggcg caactcttcg gaaaggtgca actcttcgga aaggtgcaag gaacggatgt       420
     attgattcgg gaagcatcct ttcgccccct atataaggaa gggcgcccgg gaccattcca       480
     ctcaccacaa cacaccgaaa acacaagaaa ctcaccatta aaactctctc cctcttggga       540
     gaataaatag tcttaggatt cggtagccgg gctgtggccg gcaataaaga aggagggtcg       600
     gatcgaccta acctcgagaa ggaaggtaag ggatcctaga ctttgagtct aagggttcta       660
     ggatgtgagt aagtagtcgg atccttgaaa ggattgacta gagggcttgg tagtatccgg       720
     gtcatgtgca tcctacacaa gactcggtcc gggtagggat cagctgaggc ggggacacgg       780
     ctcgacggag gaccggcggg tcttaactga cctgccgaga atcggccgga ctgatgcgcg       840
     atcttcccct ctctgaattc tctccacgga tccgagtagt gtatggcata tagagcattg       900
     catggacttg catatgatta agtaaatgag attacttatg gctctatgac tttcatgaac       960
     aaatggtgat cgtgggaagg acttggctta ggcgcgagag actcaaggcc gggatgatgg      1020
     gtggtgatag ttcggatagt ctagggatcg attatatgac ttgtaatagc ttatatgcaa      1080
     actcataggt tgtatcgaat cctttgctta atcaataaag tatccgattg tttgtttact      1140
     ctattcgtct catatattga atcacggaat catatggaac ggattagact aggaaagaac      1200
     ctcataaacg gttagggccg agtcacttac tgtcttaggt cgagagaact cgtccggact      1260
     ttaggcagtc cggatcgggg cctttca                                          1287
//
ID   HELITRON2   repbase; DNA   ; ATH   ; 11435 BP.
XX
AC   .
XX
DT   29-AUG-2000 (Rel. 5.07, Created)
DT   24-MAY-2001 (Rel. 6.04, Last updated, Version 2)
XX
DE   HELITRON2 is a DNA transposon, a consensus sequence.
XX
KW   Helitron; DNA transposon; Interspersed Repeat; helicase; HELITRON2;
KW   replication protein A; HELITRON class.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-11435
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON2.";
RL   Direct Submission to Repbase Update (00-AUG-2000).
XX
RN   [2]
RP   1-11435
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (00-MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [2] (Consensus)
XX
CC   HELITRON2 is a DNA transposon.
CC   There are 10-20 copies of HELITRON2 in the
CC   genome; they are ~95% identical to the consensus sequence.
CC   HELITRON2 transposes precisely in the AT target sites, without
CC   duplication of the host DNA.
CC   HELITRON2 carries two genes that encode proteins ATRPA2Hp and
CC   ATHEL2p, respectively.
CC   ATRPA2Hp is 518 aa long, is encoded by 10 exons (position
CC   1133-3605) and is similar to the large subunit of RPA1,
CC   the replication protein A.
CC   ATHEL2p is 1774 aa long and is encoded by 11 exons
CC   (position 4441-10829). It is composed ot the rolling-circle
CC   replication initiator and DNA helicase domains.
XX
FT   CDS           0..0
FT                 /product="ATRPA2Hp"
FT                 /translation="MMLANPLPFTPLKSLKPYKNAWRIQVKLLHVWRQYS
FT                 VKAGESIEMILVDEAGDKMYAAVRREQIKKFERCLTEGVWKIITTITLNP
FT                 TSGQYRISDLKYKIGFVFKTTVSPCDTVSDALFLSLAKFDVILSGSANSN
FT                 ILHDVMGQVVDRSEIQDLNANNKPTKKIDFHLRDQHDTRLACTLWGKYAE
FT                 IVDQACQESTDGIVVCLIRFAKINLYNDSRSVSNSFDVSQVFVDPTLAEL
FT                 GLFKQSIPTDGLTLGSSGSFHKRLYAPRTGDDDGDYPRQTIKEVLTSSDV
FT                 GKCKTVCTVSAIDTDWPWYYFCCRAHNKKVVKEEVIKLEDVKLPQKPRFW
FT                 CEICNGFAKSVVAKFWLHLHIMDQTGEARCMLFDSHAKEILGTTAHELLD
FT                 GSFDEIEDPTVLPDVINGLKGKTFQFLLCIQRENIFGGYDSFTVARVYTG
FT                 NIADEIVQEDSDAYVDPSSLISIEQGSLMLTNGVDLSDVDLSSTSTPSSK
FT                 RKDSDDVDGNDQASTSRKKCSKMTMSEEGSGE"
XX
FT   CDS           0..0
FT                 /product="ATHEL2p"
FT                 /translation="MKKRKDNDENDVHQQQKNQKTKKRTRRLFDETNFPS
FT                 HNQTLGSKNLVPVSSVFGRVLSDITNVDLTKRSQTPHTPVSLPLYPANNN
FT                 GSSSPITPINSLNSTLTGDRVIYNTPNTRENIVNRSNSSEVFNPTFTRAA
FT                 AKTRKSGNLSNTKSIPSSLRKKTNVKTTNNYDIVNKTPIRRLSAVKRMAR
FT                 KISNPSVGSPDFLTPNQTTPNVNTLFGVDYSGNVLSDITNISGESIVSTI
FT                 RLMSNKKKKVSNEQDRSEEFDDHIFDCSSQEEYESDKDSPSDQVVGPNNM
FT                 IDMKDLLRRNLNKEFAAAASNKEDGSSSTSGYHDEGDANHTCVHCGAIFW
FT                 YGERLNRRRKSANPVYTGCCMQGQIVLPMLKESPEYMWWLLTSDHPDAKN
FT                 FRANIRPYNMLFSFTSIGGKVDRSVKKGRGPSMFALQGENYHLIGALKPK
FT                 PGDYAKFQQLYIMDTDNEVDNRIEVMSKGNNGGMEGGKQKFKKETVSALL
FT                 KMLDKINPHVANFRIARDRFNIEKEEANFHMRIISKRETDGRVYNLPSVA
FT                 EVAALIPGDFDDNLDKRDIVLQMKSGKLRRIHECHVSYLALQYPLLFPKG
FT                 EDGYRLGIKKTPTKTSKGKKKQEDVSMRQWFDYRLQERKDEKHILLRSKR
FT                 LLQQFMVDAFTMIESNRLRYIKKNQTKLRSTNKQAVQDASDAGDNDLSNK
FT                 GKSCIIPPSFTGGPAYMQQNYLDAMGTCKHFGFPDLFITFTCNPKWPEIT
FT                 RFVKERKLNAEDRPDIICRIYKMKLDNLMDDLTKNHIFGKTKSAMYTVEF
FT                 QKRGLPHAHIIVWMDPRYKFPTADHVDKIIFAEIPDKEKDPELYQAVSEC
FT                 MIHGPCGLVNPNSPCMENGKCSKYYPKNHVENTSLDNEGYPIYRRRDTGR
FT                 FIEKNKYQCDNRYVVPYNDVLLRKYRAHINVEWCNQSVSVKYLFKYVNKG
FT                 PDRVTVSVEPHRKEVVSEQNNVGETNNDPQERNQVQDYFDCRYVSACEAM
FT                 WRIRGYPIHYRQTSVTKLTFHEKGKQPVYVKEGETAESVLYRVNNDETQF
FT                 TAWFELNKRDPEAAKLLYEQIPNFYTWNGKDKDFRRRKMPGFVVGRINHV
FT                 PPKIDDAYHLRILINNIRGPKGFDDIKTVEGVVHKTYRDACYALGLLDDD
FT                 KEYIHGIEEANFWCSPKYVRKLFVIMLISESLSSPAVVWEHTWKILSEDF
FT                 QRKVRDKLKRPEYILPDEDRIQLCLQELQKILKRHGTDLWRYKMLPQLEP
FT                 GDEPAFNQLILDERNYNRESLKKKHDNWLKMLTPEQKKVYDEIMDVVLND
FT                 KGGVFFLYGFGGTWKTFLWKVLSAAIRCKGDICLNVASSGIASLLLEGGR
FT                 TAHSRFGIPLTPHETSTCNMERGSDLAELVTAAKLIIWDEAPMMSKYCFE
FT                 SLDKSLKDILSTPEDMPFGGKVILFGGDFRQILPVIPAAGRELIVKSSLN
FT                 SSYLWQHCKVLKLTKNMRLLQDIDINEAREIEEFSKWILAVGEGKLNEPN
FT                 DGVTQIQIPDDILIPEGDNPIESIIKAVYGTTFAQERDPKFFQDRAILCP
FT                 TNDDVNSINDHMLSKLTGEERIYRSSDSIDPSDTRADKNPVYTPDFLNKI
FT                 KISGLPNHLLRLKVGCPVMLLRNLDPHGGLMNGTRLQIVRLGDKLVQGRI
FT                 LTGTRVGKLVIIPRMPLTPSDRRLPFKMKRRQFPLSVAFAMTINKSQGQS
FT                 LGNVGIYLPKPVFSHGQLYVAMSRVKSKAGLKVLITDSKGKQKNETTNVV
FT                 FKEIFQNL"
XX
SQ   Sequence 11435 BP; 3703 A; 1847 C; 1988 G; 3894 T; 3 others;
     tctactctat tatttgagac gtacgttaag tgattctcgg ttaaaaaaaa atttacctta        60
     aaatcatatg tttaaaatgt taatgtcatg aaaaaaatta cctttaactg agaatcactt       120
     aagttacgtt ataatcttag ccattcgatt gaattgtttg tgtccgttcg atctctcgcc       180
     ttcacttaaa aaacacgcgg atccttttga cccgggttta caatttttgg gtcatacgtt       240
     ataatcttgg ccattcgatt gaagtgtttg tgtccgttcg atctctcgcc ttcacttaaa       300
     aaacacgcgg atccttttga cccgtgttta caacttttgg gtcatacgtt ataatcttgg       360
     ccattcaatt gaattgtttt tatccgttcg atttcgcggc ttcacttaaa aaaacacgcg       420
     gatcatttta cccgggttta aaatttcggg tattcgcctc taatcttggc cattgaattg       480
     aattgtttgt atccgttcga tttcgtattt cccaaaaaaa aacacgcggt tctttttatc       540
     ctgttttaaa aaaatgggat tctcctttta atcctggccg ttgaatagat ttatttcaag       600
     ccgtccgatt ttgtagtttc atgcataaat tcatccgact atatttcagg aaactaatcg       660
     tattaatttc attcaatata ttgcgtatct tcgttaacaa tgaagtatat atcacttctc       720
     cataattatg catgaaacaa tattccgttt ggatcttctt tgggaattat cttacatttt       780
     ctccataatt atagcacata taatatttcg tttggatctt cttttggaat tatcttacat       840
     tttctccata attatagcac atctaatatt tcgtttcgat cctcttttgc aattatctta       900
     catttttcac aagtattccc tatattcata cccactttta cggaaaatgg tgaatatttt       960
     cctataatta tcggattttt gatatggaat aaacttgaat tccaaggata atatcttttg      1020
     cgcatatttt tttgacctaa ccactcattc ttataaatat cggacgcctc atttcaatct      1080
     actcactcag cttacactca cacagtttca tttccaattt catttttaaa aatgatgctc      1140
     gccaatcctc ttccattcac tcccttgaaa tcgctcaaac cttacaagaa cgcttggcgt      1200
     attcaggtta aattgcttca tgtttggagg caatattctg taaaggctgg tgaatccatc      1260
     gaaatgattt tggttgatga agctgtacgt gtattatagt ttcaacttta tattttgtcc      1320
     agccttatag taggttcaag catcattttc ccttattaat tattatttat attatttttg      1380
     tcatataggg tgataagatg tatgctgctg tgagaagaga gcagatcaag aagtttgaaa      1440
     ggtgcttaac cgagggtgtt tggaagatca ttacgaccat cactctaaat cctacaagtg      1500
     gccagtatcg tatttctgac ttgaaataca agattggttt tgttttcaaa accacggtct      1560
     ctccatgtga taccgtttct gatgctttgt tcctctcact tgctaagttt gatgtgatcc      1620
     tctctggatc cgctaactca aatatcttgc acggttagat tcaagttttc attttatttt      1680
     cgaacataca tgcattatct cttatatagt cattatattc atagatttat tctatttgtc      1740
     tatacagatg ttatgggtca ggttgtcgat cggtctgaaa tccaagatct taacgctaac      1800
     aacaagccca ccaaaaaaat cgatttccat ttgagagatc agcagtacaa acaatctata      1860
     ttcatattca ttcttattta aatgtttgtt atttttttac tttttactaa taaatttatt      1920
     ctttccattt ttagtgacac tcgcttggca tgtacacttt gggggaagta tgctgagatt      1980
     gttgaccaag cttgccagga gtcaaccgat ggtattgttg tttgcttaat ccgatttgcg      2040
     aagatcaatc tctacaacgg taattatatt gttatgtgtt actacatatc tatactattt      2100
     ttaaaaacac gaccttttat ttttaaaaca gatagtagga gtgtttccaa ttcttttgat      2160
     gtttcacaag tcttcgtgga tcccacgttg gctgagttgg gtctttttaa gcaaaggtaa      2220
     ttgtatttat ttgtcactaa atatatttgc ttctacataa tattaagcaa agtatatttt      2280
     cttgatatat agcataccaa ccgatgggtt aactttggga agttcgggat cttttcacaa      2340
     gaggctctat gcaccaagaa ctggggatga cgatggtgat tatccaaggc aaacaatcaa      2400
     ggaagtcctc acatcttctg atgtactatt cattaattta ttttatctac taaccttttt      2460
     attacatttt catattttta acttagtttg ttaattcctc tttatattca tttgaaggtg      2520
     ggtaagtgca aaacagtttg cactgtttcg gcaattgata cagattggcc gtggtactat      2580
     ttttgttgtc gtgctcacaa caagaaggtt gtcaaagagg aagttatcaa acttgaagat      2640
     gtcaagctac ctcaaaagcc aagattttgg tgtgaaatat gcaatggttt tgcaaaatct      2700
     gttgttgcca agttagtctt tatgaaatct ttatattgaa tgtattatga attataattt      2760
     ggtgtttaga agctaataat cctatttaac ttttaggttt tggttacatc tccatattat      2820
     ggaccaaacc ggtgaagcta gatgcatgtt attcgatagt catgcaaagg aaattcttgg      2880
     cactactgcc catgaattgc ttgatgggtc atttgatgag gtatattgcc tttttaaaaa      2940
     taaactcttt cattaaaatg actacgttca tgttataata atctatattt ttttgtagat      3000
     cgaagaccca actgttttgc ctgatgtgat caatggtttg aaagggaaga cttttcagtt      3060
     tctattgtgc attcaaaggg aaaacatatt tggtggatat gattcattca ctgttgcccg      3120
     agtctacacc ggtaacattg ctgatgaaat cgttcaagaa gactctgatg catacgttga      3180
     tccatcatcc ttaatttcga tcgaacaggt ttgtcaaata acattaaaca attccaatca      3240
     ttwatattta tattttaggg ttgtcttatt aaaatgttta tgtattttca tatagggttc      3300
     ccttatgctc actaatggtg ttgacctttc tgatgtggat ttgtcgtcaa cctctactcc      3360
     atcatcaaaa cgaaaagatt cagatgatgt tgatggaaat gatcaggctt ccacaagtag      3420
     gaagaagtgt tctaagatga ccatgtctga ggaaggctcc ggcgaatgat gctcaatgac      3480
     tactccagct tggatcgttt tcttctttct tatgtctttg cttaaagtta tcgaagttgt      3540
     tttatttttt taagatctaa actatcttta ttttatttta ttttattttt tgggaattaa      3600
     taaagttatt tcaattatat gtcgttttgt taacaatttt attacttaag ttatactccc      3660
     tctgttccac taaattttat ttgttatatg ttcacacaaa ttaagaaaac aaatttaatg      3720
     aaatattatt attttgttat ttaactataa tattagtaat atttctctct tctttttatt      3780
     gtttaacaat aaaaatagta atgatgttga tgtagaacat caatcttttt gaaacaataa      3840
     aaaactcaaa acatcaaatt tccagaaaac aatattgttt attattacga aacacattat      3900
     tttatattat actgttaatc atactaagaa ctataaacaa ttttgctaat tttgtattaa      3960
     atattcaaca aaatcagaat tagcaaagat tttgtacact aaataatcag tctaactaaa      4020
     caaacctatt cctatttttt catagattct cattttaata attacaattt tttgtaacac      4080
     gctaagaaat aaatgtcata attattgttc taacctataa gaaatcatat tggttgtaga      4140
     cgattcgttt cctttttaca catcaattat ttcaacgagg agataattga tcaatcatcc      4200
     cttaatttgt gttccaattt gcacaataat atagtagaaa aactaaatta gaatatacat      4260
     tccgtatgtt gtgccataat agatttagat tatagatatt ttggttaaca atatattttc      4320
     atatatattg tttcctawtt tttagcatgg ctatgtttat catattattt cgtttctcat      4380
     acatttagct ttatactgaa aacaaatcaa tattctttgt tattttttcg tcgattacaa      4440
     tgaagaaaag aaaggataat gatgaaaatg atgtacatca acaacaaaaa aatcagaaaa      4500
     ccaaaaaaag aacaagacgt ttgttcgatg aaaccaactt tccttcgcat aatcaaacac      4560
     ttgggtcgaa aaatttagtt cccgtcagtt ctgtttttgg tagagtgctt agtgacatta      4620
     ccaatgtcga tcttaccaaa agaagtcaaa ctcctcatac tcccgtgtcc ttaccgctat      4680
     acccggcaaa taataatggg agttcctcac ccattacgcc tattaattcg ttgaactcaa      4740
     ctcttacagg tagtattctc atatatcatc atcatcgttt ctttcgactt tatattgaat      4800
     catatatttt tgcacttcaa aggagacaga gtaatttata atacaccaaa cacaagagaa      4860
     aatatagtca atcgatctaa tagctcagaa gtttttaatc caacttttac aagagctgcc      4920
     gcaaaaacta gaaaatcagg ttagtaagtt atatactatt cgatatacaa cattatcata      4980
     taaatttaat tataaaaata gtattttatt tatatgttat tttttatttt tatatttttt      5040
     actgcaggaa atttatccaa tacaaaaagt ataccatcat cacttcgtaa gaagaccaat      5100
     gtcaaaacaa ccaacaatta tgatattgtt aacaaaacac ctattagaag attgtctgct      5160
     gttaaaagaa tggccagaaa aatatcaaac ccatcaggtt ataatttttt aatattttat      5220
     attagataca atacatatta gttaatatta ttatttttct ttatttggtt gttgttttct      5280
     cagtaggatc accagacttc ttaactccta atcaaactac cccaaacgta aacacattgt      5340
     ttggggtaga ttactctgga aatgtcttat cggatataac aaatatatcg ggagaatcca      5400
     tcgtctctac cattagatta atgtccaata agaagaaaaa agtatcaaat gagcaaggtt      5460
     cgatttatat ttgaaagtag ctatttatgt tatgttttag tatgtttgtc taatgtccaa      5520
     tagtcaaaca gaaattatat tgtttaatat ttttgtttgt tgattgttag gagtccccca      5580
     ttcaacwaaa ttacaatcaa aggagaattc tgcaagtatt gtacgtgaca acacgctcaa      5640
     tgacgaagaa attgatcatt ctgaagcaat atattctgat agtggtataa tgttaatcat      5700
     acttttagaa ttgccacctt tatataaaaa gtataaaatt gttttatttg tgctactttc      5760
     atgttttctt ctgtctacag ataggtcaga ggaattcgat gatcatatat ttgactgtag      5820
     tagtcaagaa gagtatgagt cagacaaaga ttcaccgagc gatcaagttg ttggaccaaa      5880
     taatatgatt gacatgaaag atttgttaag aaggaattta aacaaggagt ttgctgcagc      5940
     agcttcgaac aaagaggatg gcagttcatc cactagcggt aataatttta aaacatatat      6000
     tatatatatt agaaacaagg aaaaacaaca tgtattgatg tttgttcgat tcaggttatc      6060
     atgacgaagg tgatgcgaat cacacatgtg tgcattgtgg tgcaattttc tggtacggtg      6120
     aaagactaaa tagaagaagg aagagtgcta atccggttta tacaggatgt tgtatgcaag      6180
     gacagattgt tctacctatg ctaaaagaat cacctgaata tatgtggtgg ttgcttacaa      6240
     gcgaccatcc agatgctaaa aattttagag caaatatcag accatacaac atgttgtttt      6300
     cattcacatc tattggtggc aaggtggatc gatcagttaa aaagggacgt ggtccatcta      6360
     tgtttgctct acaaggagaa aactatcact tgataggcgc gttgaaacca aaacctggcg      6420
     attatgcaaa attccaacag ctttatatca tggacactga taatgaagtt gacaatcgaa      6480
     ttgaagttat gaggtaagtc atagttttat aaatgagctt tatgaaaaaa tttatatttt      6540
     aaaggcagct aatacattgt atttattata tgtcttttgt aattatacaa aattgcagca      6600
     aaggtaataa tggtgggatg gaaggtggga aacaaaagtt caagaaagaa acagtttcag      6660
     ctttgctaaa gatgttggac aagataaacc ctcatgttgc aaattttagg attgcccgtg      6720
     atagattcaa catagagaaa gaagaggcaa attttcatat gaggattata tctaaacgcg      6780
     agacagatgg gagagtgtat aaccttccat ctgtagctga agttgctgca ttgatacctg      6840
     gagatttcga cgacaatcta gataaaagag atatagttct acagatgaag tctggaaagt      6900
     taaggagaat acatgaatgt cacgtttcat atctagctct tcagtatcca ttgttatttc      6960
     caaaaggaga ggatgggtat aggcttggaa taaaaaaaac tcctaccaaa acttcaaaag      7020
     gaaagaagaa gcaggaagat gttagtatga ggcagtggtt tgactaccgt ttacaagaga      7080
     gaaaagatga gaagcacatc ctccttcgct caaaacgttt acttcaacaa ttcatggtgg      7140
     acgcttttac aatgatagag tctaatcggc taaggtatat taaaaaaaat cagacgaagt      7200
     tgcgcagtac caacaagcag gcagttcaag atgcttctga tgctggagat aatgatcttt      7260
     ctaataaagg aaaaagttgt attattcctc catctttcac cggtggtcca gcttatatgc      7320
     agcagaacta cttagatgca atgggtacct gtaaacattt cggctttccc gacctgttta      7380
     taaccttcac atgtaatcct aagtggccag agatcacaag atttgttaaa gagcggaagt      7440
     tgaatgctga ggacaggccg gatatcattt gcaggattta taaaatgaaa ctcgacaact      7500
     tgatggatga tctaacaaag aatcatatct ttggcaaaac caaatcaggt actacatgat      7560
     ttcatatttt tatacatata tttcatgaat tttaatttac aagtgacatt aactcataat      7620
     tgatatgttg aaacagctat gtatacagta gaatttcaaa aaagaggtct tccacatgct      7680
     cacataattg tttggatgga tcctagatac aagtttccta cagctgatca tgttgacaag      7740
     attatttttg ccgaaattcc agataaagaa aaagatccag agctatatca agctgtctcg      7800
     gaatgtatga ttcatggacc atgcggattg gttaatccta attcgccatg catggaaaat      7860
     ggtaaatgtt ccaagtatta tccaaagaac catgttgaga acacgtctct tgacaatgaa      7920
     ggttatccaa tatataggcg cagagatact ggtcgtttca tcgagaagaa taagtatcaa      7980
     tgtgacaacc ggtatgttgt tccatataac gatgtcctat tacggaaata cagggctcac      8040
     atcaatgtag agtggtgtaa ccaatccgtc tctgttaaat acttattcaa gtatgttaac      8100
     aagggacctg atcgtgtaac cgtctctgta gagcctcatc gaaaagaagt tgtctccgag      8160
     caaaacaatg taggagaaac aaataatgat ccacaagaac gaaatcaagt tcaggattat      8220
     tttgattgca ggtacttttc attattttat ttcattttat tgtaaacatt cttaagagac      8280
     tatttgaaat ataaaactta atgaaaaata actcaaatgt cgttttacag atacgtatct      8340
     gcatgtgaag cgatgtggag gattagaggg tatcctatac attatcgaca aacatcagta      8400
     actaaactta cgttccatga gaaaggcaag caacctgttt atgtcaagga aggtgagact      8460
     gctgaatctg ttttgtatag agtgaacaat gatgagactc agtttactgc atggttcgag      8520
     cttaataagc gtgatccgga agcggcaaaa cttttatatg aacaaatacc taatttctat      8580
     acgtggaatg gtaaagataa ggattttcgc agaagaaaaa tgccaggttt tgttgttggt      8640
     agaataaatc atgtacctcc aaagatagat gatgcatatc accttcgcat ccttattaac      8700
     aacataagag gtccaaaagg ttttgatgat atcaaaaccg tcgagggtgt tgttcataaa      8760
     acatacagag atgcatgcta tgctctaggt ttgcttgatg atgataagga atatatccac      8820
     ggtattgagg aggctaattt ttggtgttct cctaagtatg ttcgcaagtt gtttgttatt      8880
     atgcttattt ccgaaagctt gagttcccca gccgttgtat gggaacacac ttggaagata      8940
     ctgtctgaag attttcagag gaaagtaaga gataagttaa aacgtccagg ttagttaaat      9000
     tattttttaa aatgtaatat acaatttttt aaatgttttt ttacatattt tattacattc      9060
     aacctaatat taatgtatat gcagaataca tattgcctga cgaagacagg attcagttat      9120
     gtttacaaga gctgcaaaaa atattgaaac ggcatggaac agatctttgg aggtataaga      9180
     tgttgccgca gcttgaacct ggcgatgaac ctgcctttaa tcagttgatc ctcgatgagc      9240
     gcaactacaa tcgtgaatca ttgaaaaaaa aacatgataa ttggttaaag atgctaactc      9300
     cggaacagaa gaaggtatat gatgaaatta tggatgttgt ccttaatgac aaaggaggtg      9360
     tttttttctt atatggtttt ggaggaacat ggaaaacctt tttgtggaag gttctatccg      9420
     cagcgataag atgtaaagga gatatttgtt taaatgttgc gtcaagcggc attgcatctc      9480
     tgttattaga aggtggccga actgcacatt ctaggtttgg tattcctcta actcctcatg      9540
     agacctcaac atgcaacatg gagcgtggta gtgatcttgc tgaattagta acagcagcta      9600
     agttgattat ttgggatgaa gctcctatga tgagtaagta ctgttttgag tcattagata      9660
     agagtttaaa agatattcta tcgactccag aagatatgcc gtttggtgga aaagtaattc      9720
     ttttcggagg tgattttagg caaattcttc ctgtcatccc tgcagccggt agggaactga      9780
     ttgtcaaatc gtcactcaat tcgtcttatc tttggcagca ttgcaaagtt ttgaagttga      9840
     ccaagaacat gaggcttctc caagatatag acataaatga ggcacgtgag attgaggagt      9900
     tttcgaaatg gatccttgca gtcggcgagg ggaaactaaa tgagcctaac gacggagtaa      9960
     ctcagataca aataccagat gatattctta tacctgaagg agacaaccct atagaatcga     10020
     tcattaaagc agtctatggt acaacctttg ctcaagagag agatccaaag tttttccaag     10080
     acagagctat tttgtgtccc accaatgacg atgttaactc aattaacgat catatgcttt     10140
     ccaagctaac aggttagtga attaactttg gatattactc aaaattatac atataacttt     10200
     atccgctgtt acttataata gagtagatga caatgaacta ctactctttg caggtgaaga     10260
     aaggatttat cgaagttctg attctattga tccttctgac acacgtgcag ataaaaaccc     10320
     cgtatatacg cctgattttc tcaataaaat caagatttct ggattaccta accatttact     10380
     tcggttaaaa gttggttgcc cagttatgtt gttgcgtaat cttgatccgc atggaggttt     10440
     gatgaatggt acaagacttc agattgtaag acttggagat aaactggtgc aaggacgtat     10500
     attaacaggt actagagttg gtaaactggt cattattccc aggatgcccc taactccttc     10560
     ggatcgtaga ttgccattta aaatgaaaag gaggcagttt cctttatctg ttgcatttgc     10620
     gatgacgatc aataagagcc aaggccagtc attaggcaat gttggtatat atttaccgaa     10680
     gcctgttttc tcacatggac agttgtatgt cgctatgtct agagtgaaat caaaggcagg     10740
     gctgaaggtt cttattacag acagtaaagg aaaacagaag aatgaaacaa caaatgttgt     10800
     tttcaaagaa atattccaaa acctttagta gattatttct tcaggtatga tttatttatt     10860
     ttgattatta taaaataaat atcattgtac aaaattatat aacatgctaa cttagtcgtt     10920
     tttatatttg caggttggaa taattattaa aagcatttcg ttttcccatt ttcttaatgc     10980
     aagttttttt aataccagtg gagaattatg tagtctattc ttttttcttt cgtttatttt     11040
     tttaatacat tatgagtttg aagtatgaag aaagacattt tccaattatt atttgtcaaa     11100
     ttttataatt cacttacatg ttaatgacat acacgaaaat gtacaaatct actatgtgta     11160
     cacctacata tacaaaatat acaattacgt tcccaaacgt acataccaac tatagacata     11220
     tattttccat gctacaaacc gaggaaacta catatactaa acaaaatatg gtttgaccag     11280
     actaaatata tttagttggt accaataata catgataaac aactacatgt ttaaagataa     11340
     tgaaaatata gtagagtttc tgtggaatac acagaactga gattggatga ttgattaaac     11400
     caaagatatc gtgcgtagca cggatactga cctaa                                11435
//
ID   ATHILA5_I   repbase; DNA   ; ATH   ; 7505 BP.
XX
AC   .
XX
DT   14-2000 (Rel. 5.11, Created)
DT   14-2000 (Rel. 5.11, Last updated, Version 1)
XX
DE   ATHILA5_I is an internal portion of the ATHILA5 endogenous retrovirus
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; ATHILA5_LTR;
KW   Gypsy-like endogenous retrovirus; ATHILA5_I; ATHILA5p1; ATHILA5p2.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-7505
RA   Kapitonov V.V., Jurka J.;
RT   "ATHILA5_I.";
RL   Direct Submission to Repbase Update (00-2000).
XX
CC   [1] (Consensus)
XX
CC   ATHILA5_I is an internal portion of the ATHILA5 endogenous
CC   retrovirus. There are several copies of ATHILA5 in the genome;
CC   they are ~96% identical to the consensus sequence. Long terminal
CC   repeats from ATHILA5 are deposited in Repbase Update as
CC   ATHILA5_LTR. ATHILA5 has generated 5-bp target site duplications.
CC   ATHILA5_I encodes two proteins, ATHILA5p1 and ATHILA5p2.
CC   ATHILA5p1 (885 aa, position 292-2949):
CC   MANEANANELPGNIGAGDAPRNHHQRAGIVPPPIQNNNFEIKSGLISMIQGNKFHGLPME
CC   DPLDHLDNFDRLCSLTKINGVSEDSFKLRLFPFSLGDKAHLWEKTLPVESVDTWDDCKKA
CC   FLAKFFSNSRTARLRNEISGFNQKNSESFAEAWERFKGYTTQCPHHGFKKASLLSTLYRG
CC   ALPKIRMLLDTTSNGNFLNKDVAEGWELVENLAQSDGNYNEDYDRTNRGSSDSEDRHKKE
CC   IKALNDKIDKLVLAQQRNVHYITEEELTQLQDGENLTIEEVSYLQNQGGYNKGFNNYKPP
CC   HPNLSYRSNNVANPQDQVYPPQNQPPQAKPFVPYNQGYNQKQNFGPPGFTQQPQQTSAQD
CC   SEMKTLLQQLVQGQASCSMTMDKKLAELTTRIDCSYNDLNIKIDALNTRVKSMEGHIAST
CC   SAPKHPGQLPGKSVQNPKEYAHAISTVNTSATADSGIQEGEVLRPRSRQEIELDFFARLV
CC   ERAHDPSNPIPIPPPYEPKPYFPERIAQINERIFQKHKMMFIKCIKELEEKIPLVDTPKE
CC   VIMERPQEAQQIVELSFECSAIIQRKVIPKKLGDPGSFTLPCSLGPLVFNNSLCDLGASV
CC   SLMPLSVAKRLGFDKFKPSSIHLILADRSVRVPHGMLEDLPVKIGSVEIPTDFVVLEMDE
CC   EPKDPLILGRPFLATAGALIDVQMGKIDLNLGKNLHMSFDIAKKMKKPTIEGQLFFIEEG
CC   NLDAELLSGLENSIPYSIPTHHLGEPEEPLMIEGEPSSEVETKRNHFDVGPIARELMELR
CC   KQYGAQGETMEKLDLKMEELNYAILELKEMIKGYPGPEIEEYFEEPDLGEEDYTTDEKEA
CC   YFEERSNEYSTLQLSRENAEYDSDFEDSASEDEDFSVPLLNLFST
CC   ATHILA5p2 (679 aa, position 3785-5824):
CC   MDPEESRRRASARAVARGFAMINEKGPSRNQEAASPGFTRLTGRVQWPSMAPESSMGRSA
CC   AAREEIARGKRVWESEPVAEEEVPVLEKEASEEDVEIDEEVPIVPARRRRNNPRRKKEPT
CC   IEEHYQYLMELSFEGTRYPHRPTMQALGICRDVDYLMEMAKLETFFSYKCEGYKTESCQF
CC   LATLKLHFYAEERERELHKGVGYITFMVFGIQYSLPIRQLDAVFKFPTKYGIRQNFSKDE
CC   LHDLWLTIAGPLPYKSSRAKSSLIRSPVLRYLHLCIASAFFPKKTTGHVNEGELKMLDLT
CC   LCFILGRTRNGIEMEGDRADTSLSVVLIDHLIGFREYATGIHQSGYGGSLCAGGVITPIL
CC   IAAGVPLHTPTVTANYIDMEYLKRKCYLDRSAPADQLYFKFKHSTLGLSRLALPCKEFTT
CC   VRIGNNIDFDPPQSILVNVLAPLQAEPSIGSESQEEGAEFNQEEAEQEDYTRPSNFQQAE
CC   YGQAEYEQAEFSRAEQFDEQEDSCEAAAEQYFFEDYAESDQERDPGQVHKKLGMLKGLGK
CC   FQRKLFSGLKKKVRKMKRAMDGMAVQIQELQRRQRSPPPPPEFRRCNSTSVAPQRDVRFD
CC   PPRASNYELGRSSTFSDRRFNRRPPGPVNQLVLNADPSREEYYSGYMLDGSTEYNPNTST
CC   HDPEYTQDRLDEFVQNLFV.
XX
SQ   Sequence 7505 BP; 2200 A; 1564 C; 1698 G; 2043 T; 0 others;
     atttggcgcc gttgccattt gggtgttttt cttgttacat ttaggatttc tgagttatta        60
     agatcaagtt ctatttcttt ctttctggtt actcacttgt ttcttcattt gcttgttttt       120
     gtcttgcagg tactcatact cgactagcac gtcgagtaca tcaaccgagt aagatcaaaa       180
     cgtatgcaaa ctcgttctca aggttctggt aatctcctgc ggtacagaga cgacatcgac       240
     aggattcagc gtgaactcag agaacaacaa gccacttcaa acccagtagt aatggctaat       300
     gaggcgaatg ctaatgagtt gccaggcaac attggtgctg gtgatgcacc tagaaaccac       360
     catcagagag ctggtattgt cccacctcct attcagaaca acaacttcga gatcaagagt       420
     ggtcttatct ccatgattca aggcaacaag tttcatggac tgccaatgga ggacccattg       480
     gatcatcttg ataactttga tagactctgt agtctcacca agatcaatgg agttagtgag       540
     gacagcttca agctcaggtt attccctttc tcacttggag ataaagctca tctttgggaa       600
     aagactttgc ctgttgaatc tgtagacact tgggatgatt gcaagaaggc tttcctagcc       660
     aagttcttct ctaactcaag aacggctaga ttgaggaatg agatttcggg attcaatcag       720
     aagaattcag aatcattcgc tgaagcatgg gagcgtttca aaggatatac cactcagtgc       780
     ccgcaccacg gattcaagaa ggcctccctc ctcagtactc tataccgagg tgccttaccc       840
     aagatccgga tgctcttgga tacaacttcc aatggtaact ttctcaacaa agatgtagct       900
     gaaggttggg aacttgttga aaacctagca caatctgatg ggaattacaa tgaggactat       960
     gatcgcacta acagaggcag tagcgattct gaggacaggc acaagaagga gatcaaagct      1020
     cttaatgata agattgacaa attggtgctt gctcaacaga gaaatgtcca ctacattaca      1080
     gaagaagagc ttacacaact ccaagatggg gagaatctta ctattgagga ggtgagctac      1140
     ctacagaatc aaggtggcta caacaaggga ttcaacaact acaaaccccc tcatcctaat      1200
     ctctcttaca gaagcaacaa tgtggcaaac ccacaagatc aagtctaccc cccacagaac      1260
     caaccgcctc aagctaagcc ctttgtaccc tacaaccaag gctacaacca aaagcagaac      1320
     tttggacctc caggcttcac ccagcaacca cagcaaactt cagcacaaga ctcagagatg      1380
     aagactctac ttcaacaact tgtgcaagga caggcctcat gttccatgac catggataag      1440
     aagctagctg agctcaccac caggattgat tgctcttata acgacctgaa tataaagata      1500
     gatgcactta acactagagt caagagcatg gagggacaca ttgcttctac ttcagctcct      1560
     aagcaccctg gacaacttcc tggaaaatct gttcaaaatc caaaggagta tgcccatgct      1620
     atctccacag ttaatacttc tgccactgcg gacagtggga ttcaagaagg ggaggttttg      1680
     agaccaagat caagacagga gattgaactc gacttctttg ctcggcttgt cgaacgagca      1740
     catgacccga gcaacccaat ccctattcca cctccctatg aacctaaacc atactttcca      1800
     gaaaggattg cacagattaa tgaaaggatc ttccagaaac acaagatgat gttcatcaag      1860
     tgtatcaaag agttagaaga gaagataccc ttggttgata ctcccaagga agtgattatg      1920
     gaaagacccc aagaagctca gcaaatagtt gaattgagtt ttgagtgcag tgctatcatt      1980
     caaaggaagg tgataccaaa gaagctaggt gatccaggtt ccttcactct accttgttca      2040
     ctaggaccct tagtgttcaa caatagtctt tgtgatttgg gagcttcggt tagtttgatg      2100
     cctttgtctg ttgcaaagag attgggattt gataagttca agcctagcag cattcatctt      2160
     attctagctg atagatcagt gagagtgcct catgggatgc tagaagactt accggtaaag      2220
     attggatcag tcgagattcc aaccgacttt gtggttctag agatggatga ggaaccgaaa      2280
     gaccctctca ttcttgggag accattttta gcaactgcgg gcgctcttat cgatgtgcaa      2340
     atgggtaaga tcgacttgaa ccttggtaag aatctccata tgagctttga cattgctaag      2400
     aagatgaaga agcccaccat agaagggcag cttttcttca ttgaagaagg aaatttagat      2460
     gctgagttgt tgagtgggtt ggaaaattct attccgtact ccattccgac tcaccaccta      2520
     ggagagcccg aggagcctct tatgatagaa ggagaaccta gctcagaggt tgagactaag      2580
     aggaaccatt ttgatgttgg tcctattgct agagagctta tggagctcag gaaacagtat      2640
     ggagctcaag gggaaaccat ggaaaagttg gacctcaaga tggaagagct gaactacgct      2700
     atcctggagc ttaaggagat gattaaaggt tacccaggtc ctgagattga ggaatacttt      2760
     gaggaacctg atttgggaga agaggactat actactgatg aaaaggaggc ttactttgag      2820
     gaaagatcca atgagtactc tacactccag ctatcaagag aaaatgcgga gtatgattca      2880
     gactttgagg attcagcaag tgaggatgag gacttctcag ttcctctcct caatctcttc      2940
     tctacctaaa cattgtgaga gtcaagctta gtgactttaa acaagctcac ttgggaggaa      3000
     gtcccatgtc tatccttgta tatattgctt tcttgttatt tttgatgttt ttgtttaagt      3060
     gtttcaggaa aaaagacttc tgaaaaattt caggccacac tcgaccgtac cactcggcta      3120
     caggccgagt gtgggcttca attgaccaaa ggcccaagat tgaatagtac tcggaccata      3180
     ccactcggcc catggtcgag tatgggcctc actgttcaaa ggcccaagaa gatgcagcac      3240
     tcggcccgaa gccgagtcag aaaagaagcc catcaggccc aacactgtac tcgacacgcg      3300
     cgtcgagtat gtcggccgag ttcacacgtg cgaggtcaac acaattcaaa ttcaaatttg      3360
     aattcgaatt tgctcggccc caccaatcaa atcctgctcc ccaaagccct tcaaagattc      3420
     ttctgcaaat agtgaaagca tgtccccttg accaaatgaa gggtgaagat ctaaggtgtt      3480
     tggagggcta ggatcaaatc ttcttgtcta taaaaccaca ctcaacaagc taagtcactt      3540
     acactctctc tttgctcaaa aatttcgaat tttacttctt ctctccaaac atttcaagat      3600
     tttactctca cttctctcta gaattcccag aaactttacc aaaatctctt gttttctctc      3660
     catacaaacc ttttcaaaac ctctcttaca gcctttgttc agttttaaac atcaatttct      3720
     cttctacttt gacctacttt gggttatttt gtggtgacta tctgcagtaa atcatcccaa      3780
     gatcatggat cccgaagaat caagaaggag agcctctgct cgagctgtgg caagagggtt      3840
     tgcgatgatt aatgagaagg gtccgtcaag gaatcaggaa gctgcgagtc ctggttttac      3900
     tcggttgaca ggccgagtac agtggccgag tatggccccg gagtcttcta tgggtcgttc      3960
     tgcggctgct cgagaggaaa ttgcaagagg caagagggtt tgggagtccg agccagttgc      4020
     agaagaagaa gtgcctgtgc tagagaagga agcatctgag gaagatgtgg aaattgatga      4080
     ggaggtcccg atagttcctg caaggagaag aaggaacaac ccaaggagaa agaaagagcc      4140
     taccattgaa gagcactacc agtacctcat ggagctgagt tttgagggga caagatatcc      4200
     ccatagacct accatgcaag ctttggggat atgtagggat gttgactacc tcatggagat      4260
     ggccaagctg gagaccttct tctcctacaa gtgtgaagga tacaaaactg agagctgcca      4320
     attcctagcc actttgaagc tccatttcta tgctgaagaa agggagagag agctacataa      4380
     gggagttggc tatatcacat tcatggtgtt tggaattcaa tactcccttc ctattaggca      4440
     gttggatgct gttttcaagt tccccaccaa gtatgggatc cgccaaaact tcagcaagga      4500
     cgagctccat gatctatggt tgacaatcgc cggtccactc ccctacaagt catctagggc      4560
     caagagttcg ttgataagga gcccggtgct taggtatctc cacctttgca ttgcaagtgc      4620
     cttcttcccg aagaagacaa ccggccatgt taatgaggga gagctgaaga tgcttgatct      4680
     caccttatgc ttcattttgg ggcgcacaag gaatgggata gagatggaag gggatagggc      4740
     tgatacatcc ctttcggtgg tgttgattga tcacttgatt ggttttaggg aatatgcaac      4800
     cggcatccac caatccggct atggaggaag cttatgtgct ggaggagtga tcacgcccat      4860
     cctaatagcc gctggagttc ctcttcatac ccccactgtc acagcaaact acattgatat      4920
     ggagtatttg aagaggaaat gctacttgga taggtctgcc ccagctgatc aactctattt      4980
     caagttcaag cactccacgc taggtctctc taggctagca ctcccttgca aggagttcac      5040
     cacagttaga attgggaaca acattgactt tgatcctcct caatcgatct tagtcaatgt      5100
     ccttgcgcct ttacaagcag agccgagcat agggagtgag tctcaagaag aaggagcaga      5160
     gttcaaccaa gaagaagctg agcaggaaga ctatactcgg ccgagtaact ttcagcaggc      5220
     cgagtatggc caggccgagt atgaacaagc tgagttcagt cgagctgaac agtttgatga      5280
     gcaagaagat tcgtgtgaag ctgcagcgga gcagtatttc tttgaagatt atgctgagtc      5340
     cgatcaagag agagatcccg gtcaagttca caagaagttg ggaatgctca agggtttggg      5400
     caagtttcag agaaagttgt tcagtgggtt gaagaagaag gtgagaaaga tgaagagggc      5460
     aatggacggc atggcggttc agattcagga gctgcaaaga aggcagagat cgccaccacc      5520
     tccacccgag ttcaggagat gtaactcaac gagtgtggca ccgcaaaggg acgttcgttt      5580
     cgacccgcca agagcctcaa attacgagct cgggaggagc tccaccttct cagatcgccg      5640
     tttcaacagg cgcccacccg gtccagtgaa ccagttggtt ctgaatgctg acccgagccg      5700
     agaggagtac tactcgggct acatgctcga cgggtcaacc gagtacaacc ccaacacctc      5760
     cacccatgat cctgagtaca cacaagaccg cctggacgag tttgtccaga acctcttcgt      5820
     ctaaatgttg aggtatcact ccatttcact gtatatatca ttgcatttct tttatttctt      5880
     gctttgtgtg gttatttctc ttgaattctt ctttgaattt ttattacaca agggactgtg      5940
     taatttaagt ttgggggaga gttcaagatg tatctaacat tgtttcatgt tttcttattc      6000
     aaatttttgc atcatctaag gcatagaaaa cccataaaaa tttgaaaatt tttcgaaaat      6060
     gattccaaaa aaatagagtg tcatgtagtt tgcatttgca ttattagggc tgtttttaga      6120
     atgttatcat ataggttgtt gcattttgca cttgcatagg ggataatgat gatcatagcc      6180
     ttgtaaattt gcaatgttca ctagatagtt tcaatgccct tgttgttagt tgtctagtgc      6240
     ttaaccgatt gaacttgaag taaaaccgca ccatcttttg aattcatata cttgatcttc      6300
     cttagtcgaa actcgctgtg atttgaagct attccctatc aatttgaacc ataatttgac      6360
     ttttaattat catactatgc attgcttgtt aaactcatgg ttacccttaa aatatttgga      6420
     tcttcttatt catttcacca ctcttgttga tccaaatagc tgtctctcac ctttagagca      6480
     gtttccccac accctaacct aagccttctt tcaagccata tatcacttgt gagtgtttgt      6540
     gaggtcttat ttcgattaag cttggtagaa agtgttaggt ttgtaacgac aaagatagta      6600
     tctcatgtag ttctagttcg cgttatccgg actagatagg actaggtggg tacttattct      6660
     atgggttggg aagagtttaa aagagaaaaa gggttgaatt cattgtttac aagaaaaggg      6720
     aaaagaattc taggagaagt aagctaaaga agttagaaaa agtctagtaa agggtttgag      6780
     attgttaaag aaagagattg ggttattgtt agctaatgaa gaagggtaaa aagccctaag      6840
     cttaatagag attaaaaaca gaaccttagt actaaagaaa gccaaacccg ctagaagtat      6900
     caaagagaaa agaaaagctt ctcctagagt taagagaaaa agaaaagaat gggttaagaa      6960
     agagttcaaa agattatgaa tgcaaaaggg tagagttaag ttcttaattg ggatgggaga      7020
     tgggattgcc attagatctt cattgattat actttgggta gatgggatct tatctttgta      7080
     tgcataactt gggacttacc tttagcattc tactaaagct taatcattct tgagagatcc      7140
     cttgttacta aagcctattc tttaagggac catttttgtc tcttgaccct ttacccttag      7200
     ccaaatgagt ttaatatgca ttgtgtagta tgatccatgg ttcttgctta atgaatgtta      7260
     aagggaatat gctgatttga atgcttgaat agactaagtg aaagattagg ttgtgttgtg      7320
     aagaagatgg ctaaagtttt taagtagaga tcattcaacc tagcactcta gaactagcaa      7380
     catggacatt gagactattt attttacatg catattttgg ttctgaatcc ccaccttcaa      7440
     acctcactcc tagcctagtt ctatttgttg cttgaggaca agcaaagagc taagtttggg      7500
     ggtgt                                                                  7505
//
ID   ATCOPIA6I   repbase; DNA   ; ATH   ; 4480 BP.
XX
AC   AF039372;
XX
DT   12-APR-1999 (Rel. 4.03, Created)
DT   12-APR-1999 (Rel. 4.03, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA6 LTR-retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; LTR-retrotransposon;
KW   COPIA superfamily; internal region; ATCOPIA6I; ATCOPIA6LTR;
KW   EVELKNIEVEL.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RA   Henikoff S., Comai L.;
RT   "A DNA methyltransferase homolog with a chromodomain exists in
RT   multiple polymorphic forms in Arabidopsis.";
RL   Genetics (1998)In press.
XX
RN   [2]
RA   Henikoff S.;
RT   "ATCOPIA6I.";
RL   Direct Submission to Repbase Update (19-1997)HHMI, Fred Hutchinson
RL   Cancer Research Center, 1100 Fairview Ave. N (A1-162), Seattle, WA
RL   98109-1024, USA.
XX
RN   [3]
RP   1-4480
RA   Kapitonov V.V., Jurka J.;
RT   "ATCOPIA6I.";
RL   Direct Submission to Repbase Update (00-MAR-1999).
XX
RN   [4]
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
DR   GenBank; AF039372; Positions    7770    3291.
XX
CC   ATCOPIA6 is a copia-like retrovirus; its ORF encoding copia-like
CC   polyprotein is not interrupted by any stop-codons; its LTRs are
CC   identical. We presume that ATCOPIA6 may be an active retroelement.
CC   Boundaries of ATCOPIA6I and ATCOPIA6LTR, originally reported by [1-2],
CC   have been changed [3] based on hallmarks of copia-like elements.
XX
SQ   Sequence 4480 BP; 1158 A; 1268 C; 822 G; 1232 T; 0 others;
     tggtatcaga gcttgtcgat acctaaatct aaagaaaaaa aaaagaaaaa aaaattccct        60
     accgccgctc tttcttcttc tcttttccat ctctcttttt ctctctcttc tttcacgatg       120
     tctgattcaa cctccccagt atctgtctcc gagaccatcg ccgtctccac ttccaccttg       180
     ctgaatgtca acatgacgaa cgtcacccgc ctcaccgatt ccaactttgt tatgtggagt       240
     cgtcaggttc acgccctact tgatggttat gatctagccg gctacatcga cggatctatc       300
     cccatcccaa ccccgactcg caccactgct gatggcgttg tcactaccaa caacgactat       360
     acactttgga agcgacaaga caagctgatt tatagtgctc tgcttggtgc tatatctctc       420
     tctgttcagc ctcttctctc gaaggcgaac acatctgcgg agatctggga aacgctttcc       480
     tccacgtttg ctaatccgag ttgggctcat gtccaacaat tgcgtcagca gctcaaacaa       540
     tggacaaaag gaaccaagtc cattgtcacc tattttcagg gttttacaac ccgctttgat       600
     catcttgcgc tacttggaaa ggctcctgaa cgtgaagaac aaattgagct tattcttggt       660
     ggcctccctg aagactacaa gacagtagtc gaccaaatcg aaggccgtga aaatcctcct       720
     gctctcaccg aagtccttga gaagcttatt aatcatgaag tgaagctggc agccaaagca       780
     gaagccacct ccgtccctgt cactgcaaat gctgtcaact atcgtggtaa caacaacaac       840
     aacaacaact ctcggagtaa cggtcgcaac aactctcgtg gtaacacttc atggcagaat       900
     agtcagtcca cctcaaaccg ccaacaatac acaccacgtc cctatcaagg caagtgtcag       960
     atctgtagcg tccatggtca tagcgcacgt cgttgtccac aacttcaaca acatgctggt      1020
     tcatacgcct ctaatcagtc gtcatctgcc tcttatgcgc catggcagcc tcgtgctaac      1080
     atggtttctg cgacaccata caactccggc aattggctat tggatagtgg agcgacgcat      1140
     cacctcactt ctgacctgaa taatctcgct ttacaccaac cgtacaatgg tgatgaagag      1200
     gttaccattg ctgatggttc gggtttgcca atctctcact ctggttctgc cttactccct      1260
     actccaactc gctctcttgc tttaaaagat gtcttatatg ttccagatat tcagaaaaat      1320
     cttatctctg tttatcgaat gtgtaatact aatggagtat ctgtggaatt ctttcctgca      1380
     cactttcagg tgaaggatct cagcacgggg gcccgattac tccaaggcaa gactaaaaat      1440
     gagctgtatg agtggccggt caattcttcc attgctacct ccatgtttgc ttcacccaca      1500
     ccaaaaacag accttccatc atggcatgca agacttggcc atccctcttt acctatttta      1560
     aaagcactta tttcaaaatt ttctttaccc atttctcatt ctttgcaaaa ccaattgtta      1620
     tgttctgatt gctctatcaa taaaagccat aaacttccct tttactcaaa cactattgcc      1680
     tcttctcatc ctcttgaata tttatatact gatgtttgga cctctcctat tacttccata      1740
     gataattaca agtattatct ggtgattgtt gatcattata cccggtatac ttggctctat      1800
     cctttacgga aaaaatcgca ggtccgtgaa atgtttatca cattcacagc attggtcgaa      1860
     aacaaattca aattcaagat tggcacgctg tactccgata atggtggtga gttcatcgct      1920
     atgcgctcat ttcttgcctc ccacggtatc tcacatatga cgacaccacc acacacaccg      1980
     gagctcaacg gtatctctga gcgcaagcat cgacacattg tcgaaactgg ccttactctt      2040
     ctaagcaccg cctccatgcc aaaagaatat tggagttatg cgttcgccac ggccgtttac      2100
     ctcattaatc ggatgctaac acctgttcta ggcaatgagt ctccatacgt gaagttgttt      2160
     ggtcaacctc ccaactacct taagcttcga atttttgggt gcttgtgctt cccatggctg      2220
     cgtccataca ctgctcacaa gcttgataat cggtcagtgc cgtgtgtgct ccttggctac      2280
     tctttgtctc aaagtgccta tctatgtctc gatagagcta ctggccgtgt ttacacctcc      2340
     agacatgttc agtttgctga atcgagcttc ccgttttcga ccacatcccc ttctgtcaca      2400
     cctccatcag atcctcctct ctcacaagac acaagacccg tctcagtccc gcttcttgct      2460
     cgtccactca ctacagctcc gccttcgtcg ccctcgtgct cagctcctca ccggtcaccg      2520
     tcgcagtccg aaaatctctc gccaccggct ccgttacaac catcactgtc attgtctcca      2580
     acttcgccga tcacgtctcc ttcgttgagt gaagaatctc ttgtgggcca caattcagaa      2640
     acaggcccaa ctggttcttc tcctccactc agcccacagc cacaacgccc acagccacaa      2700
     agcccacaat ccacaagccc acattcctca agcccacaac caaatagccc aaatccacaa      2760
     cattccccac gttcgttaac acctacactc acgtcctcac catcaccctc acctccacca      2820
     aacccaaatc ctccaccaat tcaacacacc atgagaacac gatccaaaaa caacattgtc      2880
     aaaccaaacc ccaaattcgc aaaccttgct acaaaaccaa ctccactaaa acctataatt      2940
     cccaaaaccg tggttgaggc gttacttgat ccgaattgga gacaagccat gtgtgatgag      3000
     attaatgctc aaacacgaaa tggcacgttt gatttggttc ctccagcacc caatcaaaac      3060
     gttgttggtt gtaaatgggt ctttacttta aaatatttgt ctaatggtgt acttgatagg      3120
     tacaaagcgc ggcttgtggc gaagggattc catcaacaat atggtcatga ctttaaggag      3180
     acattcagtc cagtgattaa gtcaaccacc gtacggtctg tgcttcatat tgccgtaagt      3240
     aaaggatgga gtatccggca aattgacgtc aacaacgcct tccttcaagg caccctatcg      3300
     gatgaggtat atgtgacaca gcccccagga tttgtggaca aagataatgc ccaccatgtg      3360
     tgtcgtctct acaaagctct ctatggtctc aaacaagctc cacgtgcgtg gtaccaagaa      3420
     ttgcgctcgt atcttcttac acaaggcttc gtcaactctg tcgccgacac gtctctattc      3480
     actcttcgtc acgagcgcac catactctat gttctagttt atgtggacga tatgctcatc      3540
     actggcagtg acacaaacat catcacgcgg tttattgcta atcttgcagc tcggttttca      3600
     cttaaggatc taggggaaat gagttatttt ctcgggattg aagcaactcg cacatccaaa      3660
     ggacttcacc taatgcaaaa acggtatgtt cttgatctgt tggagaaaac taatatgctt      3720
     gctgcacatc cggttctcac tccgatgtcc ccgactccaa agctatcgct tacctcaggc      3780
     aaaccacttg acaaaccaag tgaatatcgg gccgtgcttg gtagtctcca atatctcttg      3840
     tttacaagac cggacattgc ctatgcggtg aatcgcttgt cacaatatat gcactgtcca      3900
     accgatcttc attggcaggc cgccaagcgc attcttcgat atcttgctgg aacaccatct      3960
     catgggatct tcatccgagc tgatacgcct ctcacactac atgcttactc tgatgcggat      4020
     tgggccggtg atattgacaa ctacaactct accaatgctt acattttgta tcttgggagt      4080
     aatccgattt catggtcatc caagaagcag aaaggtgttg ctcgatcatc caccgaagca      4140
     gaatatcgag cagttgcgaa tgccacttcc gagattcgtt gggtatgctc cctcctcact      4200
     gaacttggca tcacattgtc gtcaccgccg gttgtttact gtgacaatgt aggtgctaca      4260
     tacctatctg ctaatccggt attcgactca cgaatgaaac atatagcact tgatttccac      4320
     tttgttcgtg aaagtgtcca agctggagct ctccgtgtta ctcatgtctc taccaaagat      4380
     caactcgcag atgccttgac gaagcctcta ccacgacaac cgttcactac tctcatttcc      4440
     aagattggtg ttgctaaagc acctccatct tgagggggcg                            4480
//
ID   HELITRON4   repbase; DNA   ; ATH   ; 17262 BP.
XX
AC   .
XX
DT   01-FEB-2001 (Rel. 6.1, Created)
DT   01-FEB-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   HELITRON4 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; ATREP; helicase; replication protein;
KW   HELITRON superfamily; HELITRON4.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-17262
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON4.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
CC   [1] (Consensus)
XX
CC   HELITRON4 is a DNA transposon that belongs to the HELITRON
CC   superfamily. It encodes a DNA helicase-like protein,
CC   and several proteins related to the replication protein A.
CC   There are five copies of HELITRON4 in the
CC   genome; they are ~95% identical to the consensus sequence.
CC   HELITRON4 are inserted into the TA target sites, without
CC   duplications of the target sites.
XX
SQ   Sequence 17262 BP; 5722 A; 2578 C; 3051 G; 5910 T; 1 others;
     tctatactat taagagagaa tgagggacag aaaatttcca agccatttaa gccattttcc        60
     aaaaacacgt tacaggaaaa aacaaacaaa acaaattaag ggtaaaagcg tcattatccg       120
     tgctcttcgc agccgacccg agccgcgtcc gtatccgacc cgtttgaatg acgcgcggat       180
     cctgattcac gtataatggg cctctattct atttctcatt tggcgtcaag gagaacagtt       240
     ggcccatttg cgttaaacac cactcttaga aaacatttct tgctcaatat tttgcctcct       300
     ttccaagata ttcttagttc ttgaagatat tctgcaaatc acaaccaatt aggtatgatt       360
     cctatattct attgagatag tatatttagt tatgatttca tataccaaaa aatccggtgt       420
     tgctctaggg tttcagaacc aagtcctaac cgtataaata ctcaagcaat atcatcaatt       480
     ctgtcagcat tacttttctt cgcagcctat cacataatca atgagtttac ctttaggttt       540
     aacgtatctt agtgatgtca agcctttcaa aacgaattgg cgtgtccgag tcaagatcct       600
     tcatctgtgg aggcaaacca aagatgcatc aggagaaacg ttagatgtca ttatatgtga       660
     tgaaaatgta tgagagaatg ctattgatta aatatatgaa tctatatata tttcggtttg       720
     aaacatttaa catgttctta tgtgtttttg tttatttggt tttgatatag ggatctaaga       780
     tgcagatcac cattagaaag cattatattg gcaagtttca caggtcaata aaggtcggtg       840
     attggaagat cattgataac ttcactttga gtccttcgac tggcaagtac aagatatcga       900
     gtttgagcta tcgaatgggc tttaaccaca acacagatgt gattaaatgt gatcctgtat       960
     cggatagtgt ttttcttgat cttgcagatt ttgaaggggt taagaccgag agttatgatg      1020
     agaatgttct aattggtacg tattttctaa attccctatc attcttttaa ctcaaacaaa      1080
     caagtgttat ggattttaat attaacagag tattctttac aatggcagac atattaggtc      1140
     aagtggtcag tgtgggaaaa gtggatgaga ttatggctca aaacaaacca aacaaaaaac      1200
     tagagtttca aataagagat gccaggcaag tcttctcaat tgttttcata taatttttga      1260
     ttcataataa ctatgttttc aaacaagtaa tattgaaatc gtttgttact atattgaagc      1320
     aatgagcgtt tgtcttgtac tttgtggggt gtgtttgctg agaaagtatt tagtgcttta      1380
     aaaagtgtaa agcatgacga gaagacagtg gttctgatac gctatgctaa aatcaataat      1440
     tttaaaggta ttcactcttc ccttaactat gtctaaagta atcatattgg atgtatatgt      1500
     gcatgtctta gttaacatat attgtctaat tctgttaact aggtgagatt agtattacaa      1560
     gtgcttttga tgtttcggaa gtcataatca atccagttca tgttcctgag gttgaactgt      1620
     tcgtgaaatc gtaagtgcaa aatatattat gaccttcttt gttctgttta aattcacaaa      1680
     catgttaacc agacaaatgc ttatttgcag actcccaagt gatggtcttg ctctcactat      1740
     tcaagataat tatgtgaacc gtgacatcat taaggttaaa tcagataatt tttttgatta      1800
     tcctgccaaa acaattgttg atttacttca tgggagagac gtaagtatat ttccactaat      1860
     tcctaaatta ctgtgtttag tttaagtacc tataattgtg attgtattga aaatcaggtt      1920
     gggcaatgga gaatacttgg ttccattttt gccattgata ccgattgggg atggttctat      1980
     tttggatgtc ctaaatgtaa cagaaaaact gagctggtta aagaatcaac cagcactggt      2040
     aagatggtca agacacctat gaaacctaag ttctggtgtg acaaatgtca ggagagcatc      2100
     acaaatgtgg aggcaaggta agaatgtttt ctattactct tttatcttgt acaagataaa      2160
     aaaaattgtt tctattggta tacagaaaat ataaaggttt ataagtgtat attaatttga      2220
     tatgtacaat acattttact ccaggtacaa gcttcatgtt cgtgtaatgg accagacagc      2280
     tgaaattaaa ctcatggtgt ttgaaaataa tgcaaccaaa cttattggga aaacttctga      2340
     agagttagtg gatggacaat atgaagaggt attaaatata tactgtcatt caagtattag      2400
     ctatatgtct atggtagaat gaagagtact aatgtgagac atgtctatag attgaggatc      2460
     ctacgatcat acctgatgtc atcacaaatt tgtgtggaaa gacattccat tttctggtca      2520
     gtgttgagaa agccaatatt tatggtggta aagatattta caaagttaca aaggtgcatt      2580
     ttggaacaga catagccaaa gaagaatcag gtttgcttga agacactcag tatgatccat      2640
     caacaattgg gtctgaggaa caggtatgat catattcacc ttaatacaat ttgttatgct      2700
     tattaagtgt tttgtactca tagaccaaat tatatttctc aattttgtga gttagggtca      2760
     attgatgtta actaatagca gcgagaactg ttctgatgct acaaacaatg aactgtctac      2820
     tccttcatct aagcgtggtt cagctgagtt gtctgatatg gctgatcaat cgagtactac      2880
     taagaagtta tgctctaggg ttaactcaga aaatggagat gatgagattg gaaccaatgt      2940
     gataatagaa aatgctgatg aggttaaagt tatttcagat gatgctggaa gtctactgat      3000
     agaaggagta gttaaagaga ttgagcccca aacctcaaaa gctaaaggat caaccaaagt      3060
     gaagacagaa agatacaagg aataaaatta gttatatgtt ttcacagttt ttttttggtt      3120
     ttggatttaa taaaagtcag aattttctga cttcgtttat gtttttcaat aagtattaag      3180
     aacattttca attgttattt tattgactat ttatgctgct ttatacattt acatgtattg      3240
     ctattttttt gagagatttt atttctggtt ttcactatct ttgttctact atatatttat      3300
     actctttatc ctaactctat tttcttattg aatagcaaag aaccggtttc gaaattatac      3360
     tgaaacagat gaaaacatca aaagatcttt ggaattttat agtcaatata cttgcatggt      3420
     atattaaata atttttgaaa agtaagatgt gatatatcag aaatataatt gttaaatctg      3480
     aattttcaaa aataaaccaa atcaatggat cttgaaaccc tcaaaagaag ctgtctaaat      3540
     tcaaaaaagt aatcattcat tggcaaaaat ttgaaattca tttctgatat aattattttc      3600
     gaaaaaataa gaagttacgt ttattggaaa gatcaataga ttctctcctt atctcattca      3660
     tcttccacac aagaaaaaac agtagagaag aaaaagagtt tttcttcaat gtcaaacttc      3720
     aagaacttct ctgatttgcg tcctaaaaaa acaaaatgtt ttgtctttgt taagctactg      3780
     aggttgtgga attggcctcc taattacttc ggggaagaac ctactatgat tttagttgat      3840
     gagaaggtat gaaacttcta tttacagttt ttatttctat aattgttgtt atttaccgga      3900
     tctcttgaat ataaacatcc atgcaatatc ttcgctgaga ttttatactc tatatatttg      3960
     atgagatttt atatatgatc tcagggacat cgaatcgatg cattgtctcc tctacatgca      4020
     tacaaagaag aaatgatttc tacactaaga gaaggaaaat ggtatctact ctcaaacttt      4080
     gaagtggttg tagctaaccc acttgaaaga ttctcttctc atgtgttcca aattaagttt      4140
     ttacgaaaga ctacaatgga acatgttgct cctaagataa gatgtcattt cattgagtgt      4200
     tttgatttct atcggatcaa aaatgcagct cctatccaaa agaaatttgt tgttggtgag      4260
     tattttagta gttattttcc ggattttaaa gtatagaatt tggcttacag atataaaatt      4320
     taaacttgaa tctttgttat tatcaattta cagatgcaat gggagtcatt gaatcagtat      4380
     ctcccatcgg gaagatacct tgggttgcta gagagtggga aagtgacttt gcatcaagat      4440
     accttacttt cacaattaaa gatactctgt aagtttttat actttctata ctattaagag      4500
     agatagttag gacttttgga atatttactg agttcacttc atattatagg caccagtaca      4560
     tgaaatgtgt tgctgtagga agttcttgtg aagagtttga aagaaaatgg tacaagaaaa      4620
     taagtgatcc taattttaag atggagcctg tgatgattat tctgcgtttt tggaaaattt      4680
     tagagtttga aggttagttt cttattactt cttagtctga tttttctcga gatcatttga      4740
     catttatgat tttcaaattc gtgtgattgt ttaacaggaa atccatgctt gataagtgtt      4800
     tatggttgtt caaaggttca cattgatcca aatttccgag gaatcgacaa gaacaactat      4860
     ctgtaatcta cagccttatt cttaagcatc gtttattcca tatgtagtat atatagatat      4920
     taactttgtt tgtttttggt atctgtttcg taggcgtaac tttgcaggat cagatgatga      4980
     agatgatgac attttcatgg agagtgtgga gtccaatttc taagttatcg atttacaatt      5040
     tgaattatga gaaaacaatt gtgctatgct ttatgaacta tgtttatttt cttctgttat      5100
     aagttggatt tcctgtgact actttatatt attttgctta tgtttgctta tgtttaccaa      5160
     cttctagcat gaaatggatt acaacccatg ataactaaaa tgacaagagt aaaagaagaa      5220
     tcatattacc ttaatgcagt gtgctatctt ctccgacttc aaattcctga aattatagta      5280
     agacaacaat gttagtatat ttactaaatt gtttagatta aatactgaag aattcgtttg      5340
     ggatctaaaa cataagcaac cattatttat atgtctactg aatccaaata ctttatcatc      5400
     attatctact taacatatca gcaatcatta gcaaagagac ttttctattt ttttgattgg      5460
     ctacagaatc ggttagcaaa taattatata ttgactaaag gatttgaacg gttatattat      5520
     atggaaacct ttcatataga ttcactgaat cgtttcaact ttcctctcca ttcaatatat      5580
     atatataaga caaagattag gttaacttca gtcaatctat cctctctctg aaatctgtat      5640
     caaaccattc aaacttccaa tggccgacac aaactatatc cgtgacttaa gtttacacag      5700
     gaacaatcat gtcctatacg tgaaaatctt aagcatctgg gacaatcagt ctatgatctt      5760
     tggaactcct actaccatga tcctctgtga tgtgaaggtt tgtgcgtaaa caatcttttt      5820
     ggtttcttat tttggttttt ggtttctatt atagttcaaa gaattttata tgtttgtctt      5880
     tttattcagg gaaccagaat cgacgctaga gtaccttggg gggattattt gaacaatttc      5940
     aagcctagcc tatttgaagg aaagtggtat tacattgctg acttccgatt gaagagagca      6000
     acttcaatac ctaagtactc atcatttaat tatgaaatcg agtttatgtg gcacacaaaa      6060
     atgtggcctg taagtgatag atctgatgaa agttctctcc aattcatcca tgctgatgaa      6120
     gtcgaatctg aatctgagga ttatgtaact ggtaatctaa gacttattta tatagtttat      6180
     gctttcttgc aattgtattt ccttagtact aagatttata agtatctgtt tgctctgctg      6240
     ttattgttag atgctattgg agtcatatca agtgtctcaa ctgtggcgag gtttccatat      6300
     gtctgtcgtg aaggggaaac agactatgag gccagatatg tgacatttac catcagagat      6360
     aatctgtaag ttaacaagta atatgtatat tgatattgaa attcgttagg aacagacata      6420
     tatttgtagt atggtaaatt tgtattttgg ttggttgtag tgataggatc ataacatgtg      6480
     ttgctagagg gagtgcgtgt gagtcgtttc tgacaaagtt ttatcgactt attggtatga      6540
     aaacttataa ctacgagcca atcactacag tcctccggtt ctttagagcc tctaatttta      6600
     aaggttagtg aaaattcgtg aatatgttag tcacattcct ttatgatgtt aaaccctgtg      6660
     acctataact aatcaccaga attctttaca aatgttctag gatctaaggc cttaatcagc      6720
     gagcatgggt gttcaaggat cttcattgag gaatcttttc cagactttga tgtaacacga      6780
     tacatgtatg tgaaagacat tagataaatt gtttttgtta attagatact aactattcaa      6840
     gtcaaaatga catcttttta tatttttgtt acagcaattg gtttgcatgt gaagatgatg      6900
     ggtctgttga agggaagatt gagtatgttg ttgagaacta atccaagagt cagattcgtc      6960
     tttccaatga tttgtagaag caatttacat tgctgttaaa aatcaaactt attatttcta      7020
     agttgatttt ggttttatct gatgaactat tgttggaatg tttgtttgaa ttatcataca      7080
     ttgtgttctt tttttttttt atggtttcag tttccagttc tcctatttga tgttgcaagt      7140
     tactatgttt attttcccta tgttttgtat tttctttaag catgtaagac tcataagcgt      7200
     ttgagtttca aatttctgtt aaaaatatta aatttccggt tattttattt tggttataac      7260
     ttagttcata tttacagagc attttcttat acaatctaag agttattagt atctaacctt      7320
     agatggaaat gatgagttcc actctttagc tcttcttctg taaaaaagga aaaatatgtt      7380
     aataaattag taaatttaat tcaagttcta ttacataaaa agtaaaatta caatacattg      7440
     aaacctccaa tacaagacaa aattcaaatt acctatatag tatcaatatg tatatactct      7500
     ttccataaca atatatgata tcttaactaa aatattctta gaatatactc tctaatatat      7560
     taagttcgta taaataacaa acttggcgat tacacttaaa attatatatt atatctatat      7620
     attaataata tttaatcaat atataacgtt tcagtttctc gatttttgga tgttctagaa      7680
     ctgttttctc aatgattgca actcttcaat ctgctataaa atagacaatt ccgactttgt      7740
     gtttacagtt tacttttatt tttctttgag tcttcctcta atttagagac cgacacgagt      7800
     tatcaatctc aatggagagg atgaaccttt tatctgacat aggtgttcac agtactaaat      7860
     ggagtgtcta tgtgaagatt cttggtctct gccatcataa tccaccgcga gatggtgttg      7920
     taaccacgat gatgctgatc gattcaaagg taagtttata aattagcata tcttacactg      7980
     tgacttgatg gtatttgaaa ccctaaattt ctaaatttaa taattttgta atttttatgt      8040
     agtataatcg aattgatgca actattcaag aaggcatcat tcagtggaag tacaaggatg      8100
     tactcaaaga gggtttttgg tattacatgt ccgactttcg agttgtggtt aataccatgc      8160
     ctgttagata ctcattttgt tcaaaacaga tcaagtttct cagaggaaca aacatgtggc      8220
     atgttccttc tctttcaaca agtagatttt ttgagtttgt ggctccgatt gatgttaaga      8280
     atgctgcacc gcaagatatg gagtttctat ctggtaatct cttattttct atttgagatc      8340
     atatggtact ctgttttcta taacttattt tcaactttat atcatgtttg ttctcttaac      8400
     ttacattata ttaaacgttt cagatgcaat gggtattatt acaagggttt ctaacattag      8460
     gagattccca tttgtctgtc gtcaaagaga gacagattat gaagcaagat atgtgaaatt      8520
     cacgattgcg gacaacatgt aagtcttttc ttaaggaaca atattttagt ctatttctac      8580
     tcttagaaga taatcattaa taatgtggtt agtgatgata ttgagttttc tttctagggg      8640
     aaaaaagata aggtgtattg ctgttggaaa gatgtgtgag tggtttgtga accactggtc      8700
     aaagagaatc agtttgatta cttacaatta tgaaccaatt gtcgctgttc tccaaaactg      8760
     gagaatcaca aattatcatg gtcattactt tgaatttgac ttctaaataa tactaaagat      8820
     tctgtcttca ttataatatt aacatgtttt taaaatatta caggtaagaa tgttctcctg      8880
     agtgagtttg gcttttcaaa gctatacatc gatcctaaat tcgaagaaat tgatattcca      8940
     acttgcctgt aagtatatat attttggctt tttttatact ttaattgtta acattactaa      9000
     ttgccaagat gattttgaaa tgcagccgcg gatacatgat tgaagatgat gaggacgatg      9060
     taatgatgga ggtcgttgag gagaactaaa gctatgatga agtgtgtgtt tggtttttat      9120
     ttttttaaag ttaaactctg ttctttttgt ttctttctat ctctcttaac gtgtcgattc      9180
     tattctattt tgtaatggtt taagaatgct ttatttgatg tatattaatc tatgtgaaat      9240
     caaaagtttc ctatcaaatg ttaataactt agttcttata aaaaaaacaa gaatttacct      9300
     taaaataagt agtcattggc ttatagactt gagaagaatt cataccaaga aagactctcc      9360
     caaccacaat tatttccttt agtgctcgag ttgatcctat aaaaaaaaaa aaagatcttc      9420
     atagattaga aaatgaataa tcgaattctc tttaagaaaa caaaataaca aagtttaaat      9480
     agatttaaca ataaattgga tcatgtaacc aattaataat tgtttccata taaatagttg      9540
     atatcttaat cagtttagtt aaataacata acagcaaata ttctgtcaat cttttctggc      9600
     cggagaacaa agaaaagagc acataactag gttaacatat tatagaaaag tcatttctca      9660
     taaggttttg agtgtttagc tatcacgttt tcactggtat cttttctttg ttctccatgt      9720
     caaaaagaaa aaaaattcat gaaactcaat cttcagattt gtctaatgtt attcaaaaca      9780
     caactgataa gcggtttaga catgaagaaa cttctgaaaa tacacccccg tcattcaatg      9840
     gaccaagtgt gaagaaatca gtgccagtta gttctgtttt taatagggtt ctaagtgata      9900
     ttacaaatca aagagttcat acaccaagca ttagccaaac gcctggcact ttggagtcat      9960
     gtttaacatc aaaaacaagt taagtttact gatcaatcta tattatatat ttaagcttta     10020
     taggttgtcc tatataacat aactacattt aacaagattt atttatgaaa tgttaacaat     10080
     gccagcagga atcgatcttt caagtcctat tcaatcatat cgaaggcatt taacatatga     10140
     tgataatcta ccttcagatg caaatgattc tcagtatccg tttggtaagt catggtttac     10200
     aacttggtga gtctcatgtt gtttaatact atctaacgtt ttgttatatt caggaaatca     10260
     tagaccaaat tccaacctaa gttcttcatt cacaacaact aatttggaac aaggagagac     10320
     atcaaacccg tctaaagata aaagattgtt tagaaacttt accaatgaca ttcctcttca     10380
     gataaatggc gtcacacatt gtggacgagg agacagaacc gatgatccca ttcttcctga     10440
     atttctgcaa tcaggaaatc aaatgaattt aggagaatgt gacagtaatg gagaatcaga     10500
     tggtaaatat taagcataac tgcaatgatt tccttattct tcactgttaa aataaactat     10560
     agtatgtgat gtataataaa cttttcttat tttttaggtt cagagtctga tatatatgat     10620
     gatcttgaaa atggttttca agatgaagtt gattatgatt catataccaa ctacaaacaa     10680
     aaaggtgtca agattactga actggttaaa aaaaaattat gagtttttgg atgatcttga     10740
     gaagagtttg cttgccactt ttggcctggg atgtcgtacc tctaatgaaa atatagagga     10800
     acattcttac ggtgtgttat attcaataaa ctttgtaaat gaattataat aaactttttg     10860
     caaatgctca atcaaggttg taacaaatct acaagctcta atgacatcta tgtttcacag     10920
     gaaaagaaca tgaagacttt gagcgtcaat ttaatatgaa ttcaagaaaa aacaaaacag     10980
     gtatgaatat atattagtac tctgtgtatc ctctatattt aacattttat gatttcaaat     11040
     gcagtataca ttgatcatgg tgatcctatt tactcatgtg aatattgtgg agctataatg     11100
     tggcatggtg agcgtattga aaagacagtc aagaataaga agcccaagtt tacatcatgt     11160
     tgtttgcaag gtcaagtgaa gttacctttt cttaaaaatt caccagaatt actttatgca     11220
     ttgctaacca atgacgatga aatcagtaga catttcagag aaaatatcag ggcttacaat     11280
     atgatatttt cttttacatc acttggtggt gatacagaaa atagtgttag agccagtggt     11340
     ggtcctcaaa tgttccagat tcacggagag aattaccata ggatagggag tttgaaacca     11400
     gacaatgata tacctccaaa gttcatgcag ttatatattg tagacacaga gaatgaagtt     11460
     gataacagat cggaagcact caggtgagtc cattccttat agtgttacta atgtttttgt     11520
     atataacatt gatgttgttt taatattggt tactgttcta aatttgactt atttgattct     11580
     taacagtaat ggtgttaatg ctgacaagta taaaaagaaa gagttgagaa aggaaattat     11640
     tgatgctgtg atcaaattgc tgaatagtat caacccttat gtatcacact tacggactgc     11700
     tagggacagg ttcaatgcta atccagaaga gactttgcat atgagaatag ttagtaaacg     11760
     ggaaaaggat ggcagggtgt ataatgtacc aacggcatca gaggtagcca tgttgattcc     11820
     aggagatttc actatagata tgccaagcag agatatagta gtgcaagaga aatcagggaa     11880
     actacaaaga attagtgaaa ttcttccgtg ttatcttcct ttacaatatc ctcttttgtt     11940
     cccttatggt gaagatggat tcagaacagg cattgagaaa catcaaacag ggtctggtaa     12000
     aaaaacgaag aacaagtgca tatctataag gcaatggttt gccttcagaa ttcacgaaag     12060
     aaaacatgag aagcatattt tacttaggtc gagaaggcta tggcagcaat tcttggtgga     12120
     ttcttataca gcaatagaat ctaaccggct tggttacatc aaacttaacc agagtagttt     12180
     gagggcagat aattacaatt ctgtgcaaaa ggcttcagag gaaggaaaga gtgatttgaa     12240
     agatcaagga ttagcatgtt atttgccagc tacttttaca ggtggtccta gatatatgag     12300
     gaacatgtat ttggatgcga tggcattgtg taaacatttt gggtttccag attattttat     12360
     cacattcact tgcaatccaa agtggccaga gctgattagg ttttgtggtg agcgaaactt     12420
     gagagctgat gatagacctg agattatatg caagatcttc aaaatgaaac ttgattctct     12480
     gatgcttgat ttaactaaaa gaaacatact agggaagaca agtacatgta agcagatttt     12540
     aatttgtttc atttactctg aaatattatg tctattatta tttttgataa ctataataat     12600
     tattatgttt tctgtgtaat tgcagctatg tatactatag agtttcaaaa aagaggactc     12660
     cctcatgctc atatactaat ttggctggat tcaaagtgta agttgaccaa agcagagcac     12720
     attgataaag ttatatcagc agagattcct gacaaattga aagaccctga gctatttgaa     12780
     gtgataaagg aaatggatgg ttcatggtcc ttgtggtgtg gtgaacccga aatgtccatg     12840
     tatggaaaac ggaaagtgtt caaagtttta tccgaaagat catgttcaaa aaacaattat     12900
     tgataaagaa ggatttccaa tatacagaag gcgaagaaca gatgactttg ttcagaagaa     12960
     agactttaaa tgcgataacc gttatgtcat tccttataat agatccctat cactgagata     13020
     cagagctcac atcaacgtgg agtggtgtaa ccaatcaggt tctgtgaaat acatattcaa     13080
     gtatattcat aaaggaccag atcgtgttac tgttgttgtt gaatcgtctc taaattcgaa     13140
     aaataaagaa aaaggtaaac agaaggtcaa tgctgataca gatggatcag agccaaagaa     13200
     gaagaatgaa gtcgaagact atttcaattg caggtatgtt taattaaaat tttaatagta     13260
     ttattcctgt taaatacatt tatttatgtt ccttatgatt gtataatttt gcatttcaga     13320
     tatgtttctg cttgcgaagc agcctggaga atattaaaat atcctataca ttatagatct     13380
     actgctgtga tgaagctttc gttccatttg ccaggggaac aatttattta tttcaaaggc     13440
     gatgaagaag tagaaacagt gttaaacaag gctgatctag atggctccat gttccttgct     13500
     tggttcgaat taaataaagt tagtaagatt gctaggaagc tgacttatgc agacatcccc     13560
     actagattta cctatgatcc aaaagaaaag aaatttaatc tcagaaagaa aggctttgct     13620
     ataggaagaa taaactatgt tcctcgtgat atagaagatg gatattattt gagaatactt     13680
     ctcaatgttg tgccaggtcc aagatgtttt gaagagctaa ggacagttaa tggtgtgcta     13740
     tataaagagt ggaaagatgc ttgtgaagca ttaggcttat tagataatga tcaggaatac     13800
     attgatgatt taaagagaac aagtttttgg agcagtggtt ggtatctacg tcagttattc     13860
     gtaattatgt tagatgctct aattagtcct gaaaatgtgt gggctgcaac gtggcaacat     13920
     ctctctgaag atattcaaaa cgataaaagg aaatatttca acagaccagg taacatctaa     13980
     tatcatttca aaacctcaat tttatctcat tttgttatac aatgcaatat tgataataaa     14040
     cttgctttgc taaattgtaa ctcatttagt tatctgtttg tttacagatc taattttgtc     14100
     tgatgaggag aaaaaattat atgctctaca agagatagat cacattttaa gaaggaatgg     14160
     tacttcactt acatattata agactatgcc acaagtacct agagatccta ggtttgatac     14220
     taatgtcttg attttggatg agaaagggta tgatcgtgat agtttgacaa aaaaacatgc     14280
     cgaatggatt aaaatgctta ctccagagca gaagtctatt tacgataaca ttattggtgc     14340
     agtgaatgaa aacgttgggg gagtattttt tgtttatgga tttggaggaa caggaaaaac     14400
     atttctttgg aaaacactct ctgctgcact taggtcaaag ggtgacattg ttcttaacgt     14460
     tgcttccagt ggtattgctt ctctcctttt agaaggaggt aggacagctc actctagatt     14520
     tggaattcct cttaatccta atgagtttac tacatgtaat atgaaagctg gttcagatag     14580
     ggcaaattta gtcaaagaag cttctctgat tatatgggat gaagctccaa tgatgagcag     14640
     acactgtttt gagtcattgg ataggagttt gtcagatatt tgtggtaatg gtgataacaa     14700
     accgtttggt ggcaaggttg ttgtctttgg aggtgacttc agacaagttc taccagtaat     14760
     ccccggtgct gatagggcag acatagttat gtctgccctt aattcatctt acctatggag     14820
     tcattgcaaa gtattgactc tgacaaagaa tatgcgtctt tattctgaag gtttgagtgt     14880
     tagtgaagcg aaagatatta aagagttttc agagtggata ttagcagtag gtgacggtag     14940
     aattggcgag cctaatgatg gggaggcttt gatcgatatt ccttctgaat ttcttattac     15000
     gaaagcaaaa gatccaatac aagccatatg cacagagata tatggagata ttacaaagat     15060
     acatgaacaa aaggatccag ttttttccaa gaaagagcaa tattatgtcc caccaacgaa     15120
     gatgtcaacc aaataaatga gaccatgctt gataacctcc aaggttatta ctaattcaga     15180
     agcattgatt tgaaacttta tttacttata ttaatagtgt ttctatttcc tatttcttct     15240
     ataactgtaa ctaaccaaaa ttttaatttt caggagagga gtttacattc ctaagttcag     15300
     acagtttaga cccagctgac attggtggta gaaataatcc ggcattgact cctgactttt     15360
     tgaatagtgt taaagtttca gggttaccta accataagct tcgtctaaag attggttgtc     15420
     ctgtgatgtt gctcagaaat attgatccta taggtggtct aatgaatggc acaaggttac     15480
     ggatcacgca aatgggtcca ttcattttgc aagcaatgat tctaaccggt gacagagctg     15540
     gtcatttagt attgattcca agattgaagc taacaccatc agacacaaag ttgccattta     15600
     gaatgcgaag aacacaacta cctttagctg tttgctttgc aatgactatc aacaaaagcc     15660
     aaggacaatc tttgaaaaga gtaggtattt ttctacctag gccttgcttt tcacacagcc     15720
     aactttatgt tgccatatcc agagttacat caaagtcagg attaaagatt ctgattgtgg     15780
     atgatgaagg taagccacaa aagcaaacaa aaaatgtagt tttcaaagaa gtttttaaga     15840
     atctttagtt tccatttgtt ttttacttct gttggattct tatcatgtca gtcttatatc     15900
     tacaatattc gttgaacatt tgctacttca atctaagaat ttacactatc aaatacagat     15960
     tctaaccggt gttacttaaa ttatctatat atcaaccata tcacacaaat gcagactttc     16020
     tacttgctta aagattaaga accatgtacc ttttcaggat tgttgttgtc tgagaggttt     16080
     gtgaagaatt ttatcgattc tatgactgcc accatgaaac atccattgtc atgtcctcta     16140
     aacttcagaa catccgtact gcagttaaag aacaattcgc tgcatttgta ttttggcaaa     16200
     ttgcataaat ctatcaagta aaacagaaca atcaagattc acaattccat tcaaatttgt     16260
     ttaccttctc aatatcacat ttaacataac gaaatgtgat cagcggaaga tgaatcagaa     16320
     ttcggacaac gccaatagac taaactccaa tcaccagatt ctgaatttga aagaccatta     16380
     cacttcgcct tctccattga tcaaaatttc aatcgaattc gataagatct gatgaaattg     16440
     tgtgattaat ggaagaaaga aaatgatcag atttgttgat atccgaaaaa cccagtaaat     16500
     cgattcgaat tctgcaatcg aattgaagga agctcaatgt caaaaaaatg aacttaagat     16560
     ccattcccgt gttttatcga atagcatgtt ttgttracaa ttataacact ctttttttct     16620
     attggttagt caaagtgtca taaaaatagg ttgtttgttg tttttgttat ctttaattaa     16680
     gtatagatga ttttgaaact tttacagaat aaaaggttta tgaataattt agaaatcaca     16740
     tattgttttt attttgtttt gtgattttgt tttcaactta taaaattctt aattaaaata     16800
     tataatacac atgaaaaaat aaattcactt tcattcttat aattattcat aataaaattt     16860
     accttatctt cattactaat aaaataacaa aatgtaataa acaaaatttc tctaacactt     16920
     gacaaacata gattataata tataatacta tactaaattc atatataaaa ttccttccaa     16980
     taaataaatg catatcaaaa caaatatact ccaatactat aattaataaa tctaatattt     17040
     caaccatttg ctacaatata attttctata caaaatgatg agtgtcaaca catatattat     17100
     tataataaat attacaaaac cataagataa aaaaacaaaa aactaaataa ataccataat     17160
     acaattaaaa cgtcatagta caatagtttc caaaacttcc cgcaacatgt atttatatat     17220
     caaaatttaa cacccgggcg aagcacgggt tatcaatcta gt                        17262
//
ID   ATREP1      repbase; DNA   ; ATH   ; 890 BP.
XX
AC   .
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   16-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATREP1 repeat - a consensus.
XX
KW   non-classified repeat; ATREP2; ATREP1.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   177-890
RA   Kaplan N., Johnson D., Schutz K., Gnoj L., Hoffman J., Till S.,
RA   de la Bastide M., Granat S., Hameed A., Gottesman T., Hasegawa A.,
RA   Shohdy N., Parnell L., Dedhia N., Johnson F.A., Lodhi M.,
RA   Martienssen R., Chen Y.E., Wilson R., McCombie R.W.;
RT   "ATREP1.";
RL   Direct Submission to Genbank (00-DEC-1997); AC002330.
XX
RN   [2]
RP   1-890
RA   Kapitonov V., Jurka J.;
RT   "ATREP1.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
CC   [2] (Consensus)
XX
CC   ATREP1's individual copies are 94% identical to the consensus
CC   sequence.
CC   Multiple diagnostic positions indicate the existence of several ATREP1
CC   subfamilies.
CC   It is possible that ATREP1 has preferentially been inserted at ACTAGAT
CC   target-site forming 5 bp-long duplications.
XX
SQ   Sequence 890 BP; 339 A; 89 C; 110 G; 350 T; 2 others;
     actagatttt aacccgcggt acaccgcgga gacaatttat tttttaaagt tagtatatat        60
     aaaaatttgc aaattgtatc tatctataaa atatttttat tttatagttt acaattgtta       120
     ttaagtaacg tcctgccaaa cccgtcccgc caaacccgtc ccgaaaaaaa accatttatt       180
     ttattaatgt tgatcttatt tatgatatgt ttatgaatca ttgtctaaat attttagtcg       240
     atgcgggacg ttgaacccac acatttttcg ccaattggtt aatatatgtt catttttaaa       300
     atttcgaatc acaaaatatg acggawttaa awttgagatt tttttaaact ctatatatta       360
     tataatgatg ttaaaaattt ttgatatatt aaacttttta taagtttaaa tattaataat       420
     gttttataaa gtttaaatat ataaataata atatttaaaa aattaatatt ttttgccttt       480
     taggtaatga cataataact ctaaaagcaa ggatttagaa gatttaaatc tttaattaaa       540
     tattttcatt cctaaataat taatgtcagt agcatgacat tgtaaataag ttcaaataca       600
     tgatttattt atttaaacaa aaaacgttta gtaagaataa tatttattta aacaaaaaac       660
     tttgttttaa aatattgtta acaaaatacg tttatgctaa ttttaaggga ttgatgtgaa       720
     gtttgtttgg attaaatttg attgataatg tgattgacaa tttaaattaa gaatttaaag       780
     taaaattaat tattttggaa aaaagattta atgctaatgg cattgggttg taaataagtc       840
     caactctagg atttatttgc taaaatggct gcaaaaatgt atatatagat                  890
//
ID   ATREP1      repbase; DNA   ; ATH   ; 890 BP.
XX
AC   .
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   05-MAY-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   ATREP1 dispersed repeat - a consensus.
XX
KW   ATREP1; ATREP superfamily; Dispersed repeat;
KW   putative nonautonomous DNA transposon.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   700-1
RA   Kaplan N., Johnson D., Schutz K., Gnoj L., Hoffman J., Till S.,
RA   de la Bastide M., Granat S., Hameed A., Gottesman T., Hasegawa A.,
RA   Shohdy N., Parnell L., Dedhia N., Johnson F.A., Lodhi M.,
RA   Martienssen R., Chen Y.E., Wilson R., McCombie R.W.;
RT   "ATREP1.";
RL   Direct Submission to Genbank (00-DEC-1997); AC002330.
XX
RN   [2]
RP   1-1
RA   Kapitonov V., Jurka J.;
RT   "ATREP1.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
RN   [3]
RP   1-890
RA   Kapitonov V., Jurka J.;
RT   "ATREP1.";
RL   Direct Submission to Repbase Update (00-MAY-1999).
XX
CC   [2] (Consensus)
XX
CC   ATREP1's individual copies are 94% identical to the consensus
CC   sequence.
CC   Multiple diagnostic positions indicate the existence of several ATREP1
CC   subfamilies.
CC   It is possible that ATREP1 has preferentially been inserted at ACTAGAT
CC   target-site forming 5 bp-long duplications.
CC   ATREP1 and ATREP2 share almost identical terminal portions
CC   (236 bp-long 3'-terminus and 70 bp-long 5'-ternimus) whereas
CC   there is no significant similarity between their AT-rich
CC   internal portions.
XX
SQ   Sequence 890 BP; 350 A; 110 C; 89 G; 339 T; 2 others;
     atctatatat acatttttgc agccatttta gcaaataaat cctagagttg gacttattta        60
     caacccaatg ccattagcat taaatctttt ttccaaaata attaatttta ctttaaattc       120
     ttaatttaaa ttgtcaatca cattatcaat caaatttaat ccaaacaaac ttcacatcaa       180
     tcccttaaaa ttagcataaa cgtattttgt taacaatatt ttaaaacaaa gttttttgtt       240
     taaataaata ttattcttac taaacgtttt ttgtttaaat aaataaatca tgtatttgaa       300
     cttatttaca atgtcatgct actgacatta attatttagg aatgaaaata tttaattaaa       360
     gatttaaatc ttctaaatcc ttgcttttag agttattatg tcattaccta aaaggcaaaa       420
     aatattaatt ttttaaatat tattatttat atatttaaac tttataaaac attattaata       480
     tttaaactta taaaaagttt aatatatcaa aaatttttaa catcattata taatatatag       540
     agtttaaaaa aatctcaawt ttaawtccgt catattttgt gattcgaaat tttaaaaatg       600
     aacatatatt aaccaattgg cgaaaaatgt gtgggttcaa cgtcccgcat cgactaaaat       660
     atttagacaa tgattcataa acatatcata aataagatca acattaataa aataaatggt       720
     tttttttcgg gacgggtttg gcgggacggg tttggcagga cgttacttaa taacaattgt       780
     aaactataaa ataaaaatat tttatagata gatacaattt gcaaattttt atatatacta       840
     actttaaaaa ataaattgtc tccgcggtgt accgcgggtt aaaatctagt                  890
//
ID   ATN9_11     repbase; DNA   ; ATH   ; 678 BP.
XX
AC   .
XX
DT   26-APR-1999 (Rel. 3.3, Created)
DT   26-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATN9_11, a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; ATN9_11.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-678
RA   Kapitonov V., Jurka J.;
RT   "ATN9_11.";
RL   Direct Submission to Repbase Update (00-APR-1999).
XX
CC   [1] (Consensus)
XX
CC   ATN9_1 is a putative nonautonomous DNA transposon that may be
CC   mobile curently.
CC   Its individual copies are 98% identical to the consensus
CC   sequence. They are flanked by 9 bp-long target-site duplicates.
CC   This element does not have terminal inverted repeats. However,
CC   we consider ATN9_1 as a nonautonomous DNA transposon mobilized
CC   by MUDR-like transposase because MUDR-related transposons induce
CC   9 or 10 bp-long target-site duplications and are flanked by
CC   5'-GGG and 3'-CCC (ATMU - like elements) or do not have TIRs
CC   at all like ARNOLD-like transposons.
CC   There are abpout 50 copies of ATN9_11 in the haploid A.thaliana
CC   genome.
XX
SQ   Sequence 678 BP; 292 A; 84 C; 87 G; 215 T; 0 others;
     gggtaatatt agtagataac caaataaaac atacaaatta agaaactagc agagagaaag        60
     ttttttgtta caaaataacc atggacccac gttgtcggaa gaaaggaaat aacaaagcta       120
     cccttcattt gttgtaagat gaacagtaaa cgaaacacat ccgtgtaatt tttcaaaata       180
     gcatgtaaca ttaaaatttc acatgttata tttagtttaa aaacatgcta tttcaaaaaa       240
     cgttatgaat ttttaagaaa aaacattatt atgaaattct tttacatgaa cagaatctta       300
     aaaaaaaaaa attatatgtg attttaataa aaaccatgta ttactaaaaa ataagaatat       360
     atttttaaag aaatcacgtg tgatcttaat aaaaaacgtg tattactaca aaatatcatg       420
     ataaaaagag atattaaact gaatagaatg ttttttccaa aaaataccat gtgcttttta       480
     taaatactat gtaataagag aaaataacaa gataaaaaga ggatattatg ttatcgcatg       540
     tatttcggaa aaataacatg ttacaaagga catttacgta attacacgtg ttctccaaca       600
     tgtttccgac aagatactgt gactcaaggt tagtttgtac attcttttca aatctatagt       660
     catttattat aaatactc                                                     678
//
ID   ATGAGPOL1_LTR repbase; DNA   ; ATH   ; 1160 BP.
XX
AC   .
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATGAGPOL1_LTR , long terminal repeat from ATGAGPOL1
DE   LTR-retrotransposon - a consensus.
XX
KW   LTR retrotransposon; ATGAGPOL1_LTR; ATGAGPOL1_I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1160
RA   de la Bastide R.M., Parnell D.L., Kaplan N., Gnoj L., Hameed A.,
RA   Schutz K., Hasegawa A., Gottesman T., Shohdy N., Granat S.,
RA   Jensen K., Johnson F.A., Lodhi M., Dedhia N., Martienssen R.,
RA   McCombie R.W.;
RT   "A. thaliana BAC T32N15 from chromosome V.";
RL   Direct Submission to Genbank (00-DEC-1997)(September,; AC002534).
XX
RN   [2]
RP   1-1160
RA   Kapitonov V., Jurka J.;
RT   "ATGAGPOL1_LTR.";
RL   Direct Submission to Repbase Update (00-JAN-1999).
XX
CC   [2] (Consensus)
XX
CC   ATGAGPOL1_LTR is a long terminal repeat from ATGAGPOL1
CC   LTR-retrotransposon. An internal part flanked by ATGAGPOL1_LTR is
CC   deposited as ATGAGPOL1_LTR.
CC   The consensus sequence has been reconstructed based on 30 individual
CC   copies present in the GenBank 109.0 release. There are two major
CC   subfamilies of ATGAGPOL1_LTR. Sequences from the first subfamily
CC   are ~97% identical to each other; the second subfamily is a little
CC   bit older since its copies have 95% mutual identity. There is ~92%
CC   identity between sequences from different subfamilies. Examples of
CC   the first subfamily include copies found in AB01821 and AC002534
CC   GenBank loci; copies found in AF0588825 and AC006268 represent the
CC   second subfamily. There is 97% identity between consensus sequences
CC   reconstructed for each of these subfamilies.
XX
SQ   Sequence 1160 BP; 281 A; 141 C; 299 G; 439 T; 0 others;
     tgtaacgccc gtgaaccgga aaatcggtta gggtttgttt ttaaatcatc cggtttaatt        60
     ggttgggtta attggaaacc ctagagtgtg cctataaaag aaggaaactc gaaattaggg       120
     ctttagttag ccacttttcg ttttataaag gagaaaaaga gagaaaagga gaaggagcag       180
     aatcgttagg gtttgggaga aatcagtttc gtcatatcaa atcgtggtaa aaggtaacga       240
     aatttggtag agttattccc aagtccttta tcgttattct ccagtttaca gaattggatt       300
     tggattaaaa ttggttgagt tattcgcagt ttcgtgagac acgttttctc agacgcgaat       360
     taggaccagc ggagattgaa actgagatcg tggtctcgtc tgttttccga tcggcacgag       420
     attttgtggg cagctttgtg acgtctgcag ctaggatttc accggagcga ttgaatagtt       480
     aacggttagc ttgtatttta gggtttcgtc tttgagactg cttgtttctg gtttttcctg       540
     tccagtttgc ttcaaggttg cttttggttg tggacttgtt gtaggacgtt tctggactgt       600
     ttcagacgca aggagagtct ctcctgggtt taattgctat tagaatcaat ttgttaaggt       660
     gagtgcgtga ccatgagctt atctgagcga ttgggttgtg tgatttgttt tgtgtgatga       720
     tatgtaggtg tggtgaatgt gttttgggtg aattgttcaa tgactggttt gtttgtattg       780
     tattcgtgat tatacctttt tatttgcttg tgtgtatagc tcgtagatgg gaggatcgcc       840
     tcactaagta tttatgataa tacttacgca tctcattgtg ttgttgatgc aggtaaagat       900
     aaagtgtgat cgtggaatca tggcaaggaa gagaggatga tctaggaact cgtttgtttt       960
     atttttggtg tttttggtta ttggaacccg gttaggattg tcagttattc ttggttttgt      1020
     tggtcgaatt atttatttat tcataaaata gtatttttga cttgcggttt aattattatg      1080
     ttattggttg gtttaattag atatttatgg gaatatttaa ttatattttt ttttaaaaaa      1140
     aaatgggtcg ggttgtttca                                                  1160
//
ID   ATMU4       repbase; DNA   ; ATH   ; 4496 BP.
XX
AC   AC025417;
XX
DT   18-SEP-2000 (Rel. 5.08, Created)
DT   18-SEP-2000 (Rel. 5.08, Last updated, Version 1)
XX
DE   ATMU4 is a molecular fossil of an autonomous DNA transposon.
XX
KW   MuDR; DNA transposon; Interspersed Repeat; TIR;
KW   Autonomous DNA transposon; transposase; DNA-binding protein; ATMU4;
KW   MUDR superfamily.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4496
RA   Kapitonov V.V., Jurka J.;
RT   "ATMU4.";
RL   Direct Submission to Repbase Update (00-SEP-2000).
XX
DR   GenBank; AC025417; Positions   80238   84733.
XX
CC   ATMU4 is a fossilized copy of autonomous DNA transposon from
CC   MUDR superfamily.
CC   It is flanked by a 10-bp target site duplication.
CC   ATMU4 has 280-bp terminal inverted repeats and encodes
CC   two proteins, ATMU4p1 and ATMU4p2.
CC   ATMU4p1 is a transposase encoded by 4 exons (357-1733,
CC   1965-2194, 2266-2629, 3041-3325):
CC   MPLVRLNGIISTIGSPMEDDELESSVPVVAPPAEVISESGGGDGGVEAAAVDNRRVSGRR
CC   RTGSRVRVVEDDEPEIDPELEIDPEPDLEDDCAVYGDDDCDVVDDAVAGEGNEDNVVEED
CC   ANLNIADDFPEAYRADEEAGSDSDTGDDIWDDEKIPDPLSSDDEDEVVRVGEEAVCGDED
CC   DPEVLLAIEKTFNSPDDFKRAVLMYSLKTRYNINFYRSESLMVAAKCCYVNELGVNCPWR
CC   VLCSYEKKKHKMQIRIYFNEHICVRSGYTKMLKRSTIAALFEERLRVNPKMTKYEMVAEI
CC   KREYKLEVTPDQCAKAKTKVLKARNASHDTHFSRIWDYQAEVLNRNPNSDFDIETTARTF
CC   IGSKQRFFRLYICFNSQKVSWKQHCRPVIGIDGAFLKWDIKGHLLAAVGRDGDNRIVPLA
CC   WAVVEIENDDNWDWFLKKLSESLGLCEMVNLALISDKQSGLVKAIHNVLPQAEHRQCSKH
CC   IMDNWKRDSHDMELQRLFWKISRSYTIEEFNTHMANLKSYNPQAYASLQLTSPMTWTIRQ
CC   ARRKPLLDMLEDIRRQCMVRTAKRFIIAERLKSRFTPRAHAEIEKMIAGSAGCERHLARN
CC   NLHEIYVNDVGYFVDMDKKTCGCRKWEMVGIPCVHTPCVIIGRKEKVEDYVSDYYTKEHN
CC   LIKNKQFQVMDHKNKQLRVMDHKDMVHKDMDHKNKQLLVMDHKDMGHKDQELMDRRDKGH
CC   HKDKDQELMLDQKHKHNLNHKRKPKNKDLLG
CC   ATMU4p2 is a putative DNA-binding protein encoded by the second
CC   strand (exons 4138-3974 and 3910-3605):
CC   MSCKSGNSYPSILDGGCWGRGLASKCHCGLEVVIYTSASKSNPGRPFFRCPTKQDDHLFK
CC   WVEYGVYEEVVEALPKISSIDSEIMKAKCEVAIEIEQLKTMIKEVKEEAMCSEREIKNWK
CC   RMIKCCLVCLGFIVIVIVVGMIMFGNTKEQKLVLGY
CC   ATMU4p2 includes a conservative motif (aa positions 26-63)
CC   CHCGLEVVIYTSASKSNPGRPFFRCPTKQDDHLFKWVE present at C-terminus
CC   of DNA topoisomerase III in human, mouse and drosophila, and
CC   at C-terminus of polyproteins encoded by ORF3 in banana streak
CC   and sugarcane bacilliform retroid viruses.
CC   There are ~100 highly diverged copies of ATMU4p2 encoded by
CC   different families of ATMU-like DNA transposons and inserted
CC   in the genome.
XX
SQ   Sequence 4496 BP; 1417 A; 814 C; 972 G; 1293 T; 0 others;
     ggaaaaaatg tagttaaatc ccccaacttt caaaaaatgg ccaatcaata cgtcaactta        60
     gatggaagcc atttaaaaca tcaacttaca gttgactaac aaataaaaca tgaactttgc       120
     gttgacgagg ccacattata cgcgtcgtta agtcgattaa cagacccaat aaacgacgtt       180
     ttctcccgtt agtatctctc tgttagtcaa gaaacggtga cgtttagagg ttaatagaaa       240
     cccaattagg gctttgtcga gaagaaattc ccaaatcaaa tcaaattcat tcttccccaa       300
     attgcttttg ttcttcccca aatcaaaaac cctaaattat cgacgagtgt tagtggatgc       360
     cattagttag actcaacggc atcatatcga cgattgggtc accaatggaa gacgacgagt       420
     tagagagttc tgtacctgta gttgctccac cggcggaagt catttcagag tcaggtggag       480
     gagatggagg agtagaggca gctgctgttg ataacagaag agtttctgga cgtcgtcgga       540
     caggaagtag agtcagagtc gtagaagatg atgagcctga aattgatccc gagcttgaaa       600
     ttgatcccga accggatttg gaagatgatt gcgccgtgta tggtgatgac gattgtgatg       660
     ttgttgatga tgcagtagct ggtgaaggca acgaagataa cgttgttgaa gaagatgcta       720
     acctcaacat tgcagatgat tttcccgagg cttatagagc agatgaagaa gctggttctg       780
     attccgacac cggagatgat atctgggatg acgaaaagat cccagaccct ttgtcatctg       840
     acgacgaaga tgaggttgtt agagtcggag aagaggcagt ttgtggagat gaagacgatc       900
     cagaggtttt gctagctata gagaaaactt tcaactctcc ggatgacttc aagcgtgcag       960
     tattgatgta ctctttgaag acaaggtata acatcaattt ctataggtct gaatcattaa      1020
     tggttgctgc taagtgttgc tatgtaaatg agctaggtgt taattgtccg tggagagtct      1080
     tatgttcata tgagaagaag aagcataaga tgcaaataag aatttacttc aacgagcata      1140
     tatgtgtgag gtccggttat acaaaaatgt tgaagcggtc taccattgca gctttgtttg      1200
     aggaaaggct gagagttaat ccaaagatga caaaatatga gatggttgct gagataaaga      1260
     gagagtacaa attggaagta actccagatc agtgtgctaa ggcgaaaacc aaagttctaa      1320
     aggcaagaaa tgctagtcat gatacccatt tttcaaggat atgggactat caagcagagg      1380
     tattaaatcg gaacccaaac agtgactttg acatcgagac aactgcgaga acgtttattg      1440
     gaagcaagca gaggtttttt cgcttgtata tatgttttaa ttctcaaaag gtttcatgga      1500
     aacaacattg tagaccagtc ataggcatag atggagcgtt tttgaaatgg gacataaaag      1560
     gtcatcttct tgctgcagtt ggaagagatg gtgataatag gattgttcct ctagcttggg      1620
     cagtggtaga aatagaaaac gatgataact gggactggtt tttgaagaaa ctgtctgaaa      1680
     gtttagggct ttgtgaaatg gtgaatctag ctttaatttc agataagcaa tcggtaagca      1740
     atcaagcttt agtttaagct ttattcgtgt ttatgcttca gtttgtattc tttgtttagt      1800
     ttcagctttt attcatgctt tagtttcagc tttattcatg ctttagtttc agctttattc      1860
     atgctttgtt tagtttcagc ttttattcat ggatcacttt cagcttttat tcttggttta      1920
     gtttcagctt ttaatgatgg attcatattt ctgtgatttt tcagggtctt gtcaaagcaa      1980
     tccataatgt actgccacaa gcggagcatc gccaatgttc taagcacata atggataatt      2040
     ggaagaggga cagccatgat atggagctac aacgtttgtt ttggaagata tcccgcagtt      2100
     acaccataga agagttcaac actcatatgg cgaatctaaa gagctacaat cctcaggctt      2160
     atgcatctct gcagcttact agtcctatga cctggtcaga gccttctttc gaataggtac      2220
     ctgctgtaat gacaacctaa acaatttgag tgagtctttt aataggacta ttagacaagc      2280
     cagaagaaag ccgttattgg atatgctaga agacatccgg aggcaatgca tggtcagaac      2340
     tgcaaagagg tttatcatag ctgagaggtt aaagtcaaga tttactccga gagctcatgc      2400
     tgagattgaa aaaatgattg ctggttctgc aggttgcgaa agacatttgg cgagaaacaa      2460
     tttgcatgag atatatgtga atgatgttgg atactttgtt gatatggata aaaagacttg      2520
     tggttgcagg aaatgggaga tggttggaat cccatgtgtt catacaccat gtgtgataat      2580
     aggcagaaaa gaaaaggttg aagactatgt tagtgactac tacacaaagg taagatggag      2640
     agagacatac agagatggta ttaggcctgt ccaaggaatg ccattgtggc ctagaatgag      2700
     taggttgcct gtcttaccgc caccttggag aagaggcaat cctggaagac aaagtaacta      2760
     tgctagaaag aaaggaagat atgaaacagc ctcttcttca aacaagaaca agatgtcacg      2820
     ggctaatcga ataatgacat gctctaattg taagcaagaa gggcacaaca agagctcatg      2880
     taagaatgct actgtcctgt taccaccacc gagaccaaga ggtcgaccaa gtctaaatca      2940
     ggttacactt cttttacgtt tcagattctc aacaagagct tcattgaatt atgtacgttt      3000
     cagattctca tcaaggcttc attgaattag gaaccacaag gagcacaatc ttatcaagaa      3060
     caagcagttt caggtcatgg atcacaagaa caagcagctt cgggtcatgg atcacaagga      3120
     catggttcac aaagacatgg atcacaagaa caagcagctt ctggtcatgg atcacaagga      3180
     catgggtcac aaggatcaag agctcatgga ccgcagagac aaagggcatc acaaagacaa      3240
     agatcaagag ctcatgttag atcagaagca caagcacaat ctcaaccaca agcgcaagcc      3300
     caagaacaaa gacttgctgg gttagaatca tggtttaatt gttcatctca gctctaattg      3360
     tagtatttct gtgacatttg cgtttttttt tgtcaaaaac ttaagctttg cctcagggtt      3420
     ttttggttgt ttgaacttaa gcacttctct tgttgtttgc ttcttgttaa actttgaaga      3480
     agataaccta tgtttttgtt gtttggttct tcttgtatgc aaacacatga tctagaaaaa      3540
     catcacactc attttcatta cgatagtaaa atacaaacac aaagacaaag aacaaaacgt      3600
     tgcactagta accaagaaca agcttttgtt ctttggtatt accgaacatt atcataccaa      3660
     ccacaatcac aatgacaata aaaccaagac acaccaagca acatttgatc atccgtttcc      3720
     aattcttgat ttccctttcg ctacacatag cttcttcctt tacttctttt atcatagtct      3780
     tcaactgctc aatctcgatt gcaacctcac atttggcctt cattatctca ctgtcaatgc      3840
     tggagatttt tggtaaagcc tctacaacct cttcgtacac gccatattca acccatttaa      3900
     acaaatgatc ctgttttcaa tcggaaatca attaccaacc aaaccaaaaa gacacaaact      3960
     caattcaact tacatcttgt ttcgttggac accgaaagaa tggccttcca ggattcgact      4020
     ttgaagctga agtatagatg acgacctcca aaccacagtg acacttcgaa gctaagccac      4080
     gtccccaaca acctccgtct agaatactag gataagaatt tccagatttg cagctcattt      4140
     cttcagcttt tgatggagaa tttggagaaa aagcagagaa tttggagaag aagaagagaa      4200
     ttagggaatt agggatttaa agtattggat ttggggtttt ttgacaaaca atcgggtttc      4260
     tattaaccta taaacgtcac cgtttcttga ctaacagaga gatactaacg ggagaaaacg      4320
     tcgtttattg ggtctgttaa tcgacttaac gacgcgtata atgtggcctc gtcaacgcaa      4380
     agttcatgtt ttatttgtta gtcaattgta agttgatgtt ttaaatagct tccatctaaa      4440
     ttgacatatt gattggccat tttttgaaag ttgggggatt taacgacatt tttccc          4496
//
ID   SIMPLEHAT1  repbase; DNA   ; ATH   ; 1059 BP.
XX
AC   .
XX
DT   13-MAY-1999 (Rel. 3.4, Created)
DT   13-MAY-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   SIMPLEHAT1 is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HAT superfamily; TIR; minisatellite;
KW   8 bp-long target-site duplication; SIMPLEHAT1.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1059
RA   Kapitonov V., Jurka J.;
RT   "SIMPLEHAT1.";
RL   Direct Submission to Repbase Update (13-MAY-1999).
XX
CC   [1] (Consensus)
XX
CC   SIMPLEHAT1 is a putative non-autonomous DNA transposon.
CC   Its individual copies are ~96% identical to the consensus and
CC   there are about 20-50 SIMPLEHAT1 copies scattered over the A.thaliana
CC   genome. They are bordered by 8 bp-long target site duplications and
CC   have 28 bp-long imperfect terminal inverted repeats.
CC   Internal portion of SIMPLEHAT1 includes 27 bp-long minisatellite;
CC   the number of the satellite monomers is a variable.
CC   Related minisatellite is present also in the Brasica genome
CC   (EST sequence AT000870) and in the SIMPLEGUY1 transposon.
XX
SQ   Sequence 1059 BP; 305 A; 135 C; 242 G; 376 T; 1 others;
     tagagatgtt gtggtgggta aaaaagccca gcccgacctg aacccaaaat aaacccgccc        60
     accaaaaacc caactttaga aaacccagat gggtttttga tttagtgggt aaagcccgaa       120
     aaaacctgat tgttccgaga ctacccgtgg gtacccaact tggtttttat cattttctta       180
     gagtttatgt ttaactgtta atatactatt atatgtatgt tgtatctata ttttgcttat       240
     aaatatattt taaattatat ttattttctg tattacatat atatttgatg ggaaaaaggt       300
     tgaattgcgt ttttggcggg aaaatgttaa attgcgtttt ttgacggaaa aatgttaaat       360
     tgcgtttttg gcgggaaaaa tgtcaaatcc ttttcttggc cggaaatgtt gaatgtcgtt       420
     tttggcggaa aaatgttaaa ttgcgttttt ggcggaaaaa tgttgaatat catttttggc       480
     gggaaaatgt taaattgcgt ttttgaccga aaaatgtgaa atctttttgg cgggaaaatg       540
     ttgaatgtcg tttttggcgg gaaaatgtta aattgcgttt ttggcgggaa aatgtgaaat       600
     catttttggc ggaaaatgtt gaatcgcgtt tttggcggga aaatgttgaa ttgcgttttg       660
     gcggaaaatg ttgaatgtcg tttttggcgc gaaaatgttg aattgcgttt tggcgggaaa       720
     atgttgattg tcgtttttgg cgggaaaatg ttgaatgtct tttttggcgg gaaaatgttg       780
     aatgtctttt ttggcggtaa actgttaaat cgcggttttg gagaaaaaaa tgtgaaatct       840
     tttttgacaa gaaaatgttg attcacttga aaaaggactt aaaaaaaacc cgtgggtacc       900
     cataacccaa tgaggtaaac ccatatgggt tttatttatt tgggtaccca gcccatttta       960
     aacctgtgtt ttttttccag aaaaagtaga tntatgggct taaaatttta tgtgggtttt      1020
     gggtacccag tgggttttaa cccatcatta acatctcta                             1059
//
ID   HELITRON2   repbase; DNA   ; ATH   ; 11437 BP.
XX
AC   .
XX
DT   29-AUG-2000 (Rel. 5.8, Created)
DT   29-AUG-2000 (Rel. 5.8, Last updated, Version 1)
XX
DE   HELITRON2 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; helicase; replication protein;
KW   HELITRON/HELICOP superfamily; HELITRON2.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-11437
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON2.";
RL   Direct Submission to Repbase Update (00-AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   HELITRON2 is a HELITRON-like DNA transposon.
CC   There are 10-20 copies of HELITRON2 in the
CC   genome; they are ~95% identical to the consensus sequence.
CC   HELITRON2 transposes precisely in the AT target sites, without
CC   duplication of the host DNA.
CC   HELITRON2 carries two genes that encode proteins ATREP1X2 and
CC   ATHELN2, respectively.
CC   AREP1X2 is 518 aa long and is encoded by 10 exons (position
CC   1133-3605) and is similar to the large subunit of RPA1,
CC   the replication protein A:
CC   MMLANPLPFTPLKSLKPYKNAWRIQVKLLHVWRQYSVKAGESIEMILVDEAGDKMYAAVR
CC   REQIKKFERCLTEGVWKIITTITLNPTSGQYRISDLKYKIGFVFKTTVSPCDTVSDALFL
CC   SLAKFDVILSGSANSNILHDVMGQVVDRSEIQDLNANNKPTKKIDFHLRDQHDTRLACTL
CC   WGKYAEIVDQACQESTDGIVVCLIRFAKINLYNDSRSVSNSFDVSQVFVDPTLAELGLFK
CC   QSIPTDGLTLGSSGSFHKRLYAPRTGDDDGDYPRQTIKEVLTSSDVGKCKTVCTVSAIDT
CC   DWPWYYFCCRAHNKKVVKEEVIKLEDVKLPQKPRFWCEICNGFAKSVVAKFWLHLHIMDQ
CC   TGEARCMLFDSHAKEILGTTAHELLDGSFDEIEDPTVLPDVINGLKGKTFQFLLCIQREN
CC   IFGGYDSFTVARVYTGNIADEIVQEDSDAYVDPSSLISIEQGSLMLTNGVDLSDVDLSST
CC   STPSSKRKDSDDVDGNDQASTSRKKCSKMTMSEEGSGE
CC   ATHELN2 is 1774 aa long and is encoded by 11 exons
CC   (position 4441-10829). It is composed of a nuclease and
CC   DNA helicase portions:
CC   MKKRKDNDENDVHQQQKNQKTKKRTRRLFDETNFPSHNQTLGSKNLVPVSSVFGRVLSDI
CC   TNVDLTKRSQTPHTPVSLPLYPANNNGSSSPITPINSLNSTLTGDRVIYNTPNTRENIVN
CC   RSNSSEVFNPTFTRAAAKTRKSGNLSNTKSIPSSLRKKTNVKTTNNYDIVNKTPIRRLSA
CC   VKRMARKISNPSVGSPDFLTPNQTTPNVNTLFGVDYSGNVLSDITNISGESIVSTIRLMS
CC   NKKKKVSNEQDRSEEFDDHIFDCSSQEEYESDKDSPSDQVVGPNNMIDMKDLLRRNLNKE
CC   FAAAASNKEDGSSSTSGYHDEGDANHTCVHCGAIFWYGERLNRRRKSANPVYTGCCMQGQ
CC   IVLPMLKESPEYMWWLLTSDHPDAKNFRANIRPYNMLFSFTSIGGKVDRSVKKGRGPSMF
CC   ALQGENYHLIGALKPKPGDYAKFQQLYIMDTDNEVDNRIEVMSKGNNGGMEGGKQKFKKE
CC   TVSALLKMLDKINPHVANFRIARDRFNIEKEEANFHMRIISKRETDGRVYNLPSVAEVAA
CC   LIPGDFDDNLDKRDIVLQMKSGKLRRIHECHVSYLALQYPLLFPKGEDGYRLGIKKTPTK
CC   TSKGKKKQEDVSMRQWFDYRLQERKDEKHILLRSKRLLQQFMVDAFTMIESNRLRYIKKN
CC   QTKLRSTNKQAVQDASDAGDNDLSNKGKSCIIPPSFTGGPAYMQQNYLDAMGTCKHFGFP
CC   DLFITFTCNPKWPEITRFVKERKLNAEDRPDIICRIYKMKLDNLMDDLTKNHIFGKTKSA
CC   MYTVEFQKRGLPHAHIIVWMDPRYKFPTADHVDKIIFAEIPDKEKDPELYQAVSECMIHG
CC   PCGLVNPNSPCMENGKCSKYYPKNHVENTSLDNEGYPIYRRRDTGRFIEKNKYQCDNRYV
CC   VPYNDVLLRKYRAHINVEWCNQSVSVKYLFKYVNKGPDRVTVSVEPHRKEVVSEQNNVGE
CC   TNNDPQERNQVQDYFDCRYVSACEAMWRIRGYPIHYRQTSVTKLTFHEKGKQPVYVKEGE
CC   TAESVLYRVNNDETQFTAWFELNKRDPEAAKLLYEQIPNFYTWNGKDKDFRRRKMPGFVV
CC   GRINHVPPKIDDAYHLRILINNIRGPKGFDDIKTVEGVVHKTYRDACYALGLLDDDKEYI
CC   HGIEEANFWCSPKYVRKLFVIMLISESLSSPAVVWEHTWKILSEDFQRKVRDKLKRPEYI
CC   LPDEDRIQLCLQELQKILKRHGTDLWRYKMLPQLEPGDEPAFNQLILDERNYNRESLKKK
CC   HDNWLKMLTPEQKKVYDEIMDVVLNDKGGVFFLYGFGGTWKTFLWKVLSAAIRCKGDICL
CC   NVASSGIASLLLEGGRTAHSRFGIPLTPHETSTCNMERGSDLAELVTAAKLIIWDEAPMM
CC   SKYCFESLDKSLKDILSTPEDMPFGGKVILFGGDFRQILPVIPAAGRELIVKSSLNSSYL
CC   WQHCKVLKLTKNMRLLQDIDINEAREIEEFSKWILAVGEGKLNEPNDGVTQIQIPDDILI
CC   PEGDNPIESIIKAVYGTTFAQERDPKFFQDRAILCPTNDDVNSINDHMLSKLTGEERIYR
CC   SSDSIDPSDTRADKNPVYTPDFLNKIKISGLPNHLLRLKVGCPVMLLRNLDPHGGLMNGT
CC   RLQIVRLGDKLVQGRILTGTRVGKLVIIPRMPLTPSDRRLPFKMKRRQFPLSVAFAMTIN
CC   KSQGQSLGNVGIYLPKPVFSHGQLYVAMSRVKSKAGLKVLITDSKGKQKNETTNVVFKEI
CC   FQNL.
XX
SQ   Sequence 11437 BP; 3704 A; 1847 C; 1988 G; 3895 T; 3 others;
     atctactcta ttatttgaga cgtacgttaa gtgattctcg gttaaaaaaa aatttacctt        60
     aaaatcatat gtttaaaatg ttaatgtcat gaaaaaaatt acctttaact gagaatcact       120
     taagttacgt tataatctta gccattcgat tgaattgttt gtgtccgttc gatctctcgc       180
     cttcacttaa aaaacacgcg gatccttttg acccgggttt acaatttttg ggtcatacgt       240
     tataatcttg gccattcgat tgaagtgttt gtgtccgttc gatctctcgc cttcacttaa       300
     aaaacacgcg gatccttttg acccgtgttt acaacttttg ggtcatacgt tataatcttg       360
     gccattcaat tgaattgttt ttatccgttc gatttcgcgg cttcacttaa aaaaacacgc       420
     ggatcatttt acccgggttt aaaatttcgg gtattcgcct ctaatcttgg ccattgaatt       480
     gaattgtttg tatccgttcg atttcgtatt tcccaaaaaa aaacacgcgg ttctttttat       540
     cctgttttaa aaaaatggga ttctcctttt aatcctggcc gttgaataga tttatttcaa       600
     gccgtccgat tttgtagttt catgcataaa ttcatccgac tatatttcag gaaactaatc       660
     gtattaattt cattcaatat attgcgtatc ttcgttaaca atgaagtata tatcacttct       720
     ccataattat gcatgaaaca atattccgtt tggatcttct ttgggaatta tcttacattt       780
     tctccataat tatagcacat ataatatttc gtttggatct tcttttggaa ttatcttaca       840
     ttttctccat aattatagca catctaatat ttcgtttcga tcctcttttg caattatctt       900
     acatttttca caagtattcc ctatattcat acccactttt acggaaaatg gtgaatattt       960
     tcctataatt atcggatttt tgatatggaa taaacttgaa ttccaaggat aatatctttt      1020
     gcgcatattt ttttgaccta accactcatt cttataaata tcggacgcct catttcaatc      1080
     tactcactca gcttacactc acacagtttc atttccaatt tcatttttaa aaatgatgct      1140
     cgccaatcct cttccattca ctcccttgaa atcgctcaaa ccttacaaga acgcttggcg      1200
     tattcaggtt aaattgcttc atgtttggag gcaatattct gtaaaggctg gtgaatccat      1260
     cgaaatgatt ttggttgatg aagctgtacg tgtattatag tttcaacttt atattttgtc      1320
     cagccttata gtaggttcaa gcatcatttt cccttattaa ttattattta tattattttt      1380
     gtcatatagg gtgataagat gtatgctgct gtgagaagag agcagatcaa gaagtttgaa      1440
     aggtgcttaa ccgagggtgt ttggaagatc attacgacca tcactctaaa tcctacaagt      1500
     ggccagtatc gtatttctga cttgaaatac aagattggtt ttgttttcaa aaccacggtc      1560
     tctccatgtg ataccgtttc tgatgctttg ttcctctcac ttgctaagtt tgatgtgatc      1620
     ctctctggat ccgctaactc aaatatcttg cacggttaga ttcaagtttt cattttattt      1680
     tcgaacatac atgcattatc tcttatatag tcattatatt catagattta ttctatttgt      1740
     ctatacagat gttatgggtc aggttgtcga tcggtctgaa atccaagatc ttaacgctaa      1800
     caacaagccc accaaaaaaa tcgatttcca tttgagagat cagcagtaca aacaatctat      1860
     attcatattc attcttattt aaatgtttgt tattttttta ctttttacta ataaatttat      1920
     tctttccatt tttagtgaca ctcgcttggc atgtacactt tgggggaagt atgctgagat      1980
     tgttgaccaa gcttgccagg agtcaaccga tggtattgtt gtttgcttaa tccgatttgc      2040
     gaagatcaat ctctacaacg gtaattatat tgttatgtgt tactacatat ctatactatt      2100
     tttaaaaaca cgacctttta tttttaaaac agatagtagg agtgtttcca attcttttga      2160
     tgtttcacaa gtcttcgtgg atcccacgtt ggctgagttg ggtcttttta agcaaaggta      2220
     attgtattta tttgtcacta aatatatttg cttctacata atattaagca aagtatattt      2280
     tcttgatata tagcatacca accgatgggt taactttggg aagttcggga tcttttcaca      2340
     agaggctcta tgcaccaaga actggggatg acgatggtga ttatccaagg caaacaatca      2400
     aggaagtcct cacatcttct gatgtactat tcattaattt attttatcta ctaacctttt      2460
     tattacattt tcatattttt aacttagttt gttaattcct ctttatattc atttgaaggt      2520
     gggtaagtgc aaaacagttt gcactgtttc ggcaattgat acagattggc cgtggtacta      2580
     tttttgttgt cgtgctcaca acaagaaggt tgtcaaagag gaagttatca aacttgaaga      2640
     tgtcaagcta cctcaaaagc caagattttg gtgtgaaata tgcaatggtt ttgcaaaatc      2700
     tgttgttgcc aagttagtct ttatgaaatc tttatattga atgtattatg aattataatt      2760
     tggtgtttag aagctaataa tcctatttaa cttttaggtt ttggttacat ctccatatta      2820
     tggaccaaac cggtgaagct agatgcatgt tattcgatag tcatgcaaag gaaattcttg      2880
     gcactactgc ccatgaattg cttgatgggt catttgatga ggtatattgc ctttttaaaa      2940
     ataaactctt tcattaaaat gactacgttc atgttataat aatctatatt tttttgtaga      3000
     tcgaagaccc aactgttttg cctgatgtga tcaatggttt gaaagggaag acttttcagt      3060
     ttctattgtg cattcaaagg gaaaacatat ttggtggata tgattcattc actgttgccc      3120
     gagtctacac cggtaacatt gctgatgaaa tcgttcaaga agactctgat gcatacgttg      3180
     atccatcatc cttaatttcg atcgaacagg tttgtcaaat aacattaaac aattccaatc      3240
     attwatattt atattttagg gttgtcttat taaaatgttt atgtattttc atatagggtt      3300
     cccttatgct cactaatggt gttgaccttt ctgatgtgga tttgtcgtca acctctactc      3360
     catcatcaaa acgaaaagat tcagatgatg ttgatggaaa tgatcaggct tccacaagta      3420
     ggaagaagtg ttctaagatg accatgtctg aggaaggctc cggcgaatga tgctcaatga      3480
     ctactccagc ttggatcgtt ttcttctttc ttatgtcttt gcttaaagtt atcgaagttg      3540
     ttttattttt ttaagatcta aactatcttt attttatttt attttatttt ttgggaatta      3600
     ataaagttat ttcaattata tgtcgttttg ttaacaattt tattacttaa gttatactcc      3660
     ctctgttcca ctaaatttta tttgttatat gttcacacaa attaagaaaa caaatttaat      3720
     gaaatattat tattttgtta tttaactata atattagtaa tatttctctc ttctttttat      3780
     tgtttaacaa taaaaatagt aatgatgttg atgtagaaca tcaatctttt tgaaacaata      3840
     aaaaactcaa aacatcaaat ttccagaaaa caatattgtt tattattacg aaacacatta      3900
     ttttatatta tactgttaat catactaaga actataaaca attttgctaa ttttgtatta      3960
     aatattcaac aaaatcagaa ttagcaaaga ttttgtacac taaataatca gtctaactaa      4020
     acaaacctat tcctattttt tcatagattc tcattttaat aattacaatt ttttgtaaca      4080
     cgctaagaaa taaatgtcat aattattgtt ctaacctata agaaatcata ttggttgtag      4140
     acgattcgtt tcctttttac acatcaatta tttcaacgag gagataattg atcaatcatc      4200
     ccttaatttg tgttccaatt tgcacaataa tatagtagaa aaactaaatt agaatataca      4260
     ttccgtatgt tgtgccataa tagatttaga ttatagatat tttggttaac aatatatttt      4320
     catatatatt gtttcctawt ttttagcatg gctatgttta tcatattatt tcgtttctca      4380
     tacatttagc tttatactga aaacaaatca atattctttg ttattttttc gtcgattaca      4440
     atgaagaaaa gaaaggataa tgatgaaaat gatgtacatc aacaacaaaa aaatcagaaa      4500
     accaaaaaaa gaacaagacg tttgttcgat gaaaccaact ttccttcgca taatcaaaca      4560
     cttgggtcga aaaatttagt tcccgtcagt tctgtttttg gtagagtgct tagtgacatt      4620
     accaatgtcg atcttaccaa aagaagtcaa actcctcata ctcccgtgtc cttaccgcta      4680
     tacccggcaa ataataatgg gagttcctca cccattacgc ctattaattc gttgaactca      4740
     actcttacag gtagtattct catatatcat catcatcgtt tctttcgact ttatattgaa      4800
     tcatatattt ttgcacttca aaggagacag agtaatttat aatacaccaa acacaagaga      4860
     aaatatagtc aatcgatcta atagctcaga agtttttaat ccaactttta caagagctgc      4920
     cgcaaaaact agaaaatcag gttagtaagt tatatactat tcgatataca acattatcat      4980
     ataaatttaa ttataaaaat agtattttat ttatatgtta ttttttattt ttatattttt      5040
     tactgcagga aatttatcca atacaaaaag tataccatca tcacttcgta agaagaccaa      5100
     tgtcaaaaca accaacaatt atgatattgt taacaaaaca cctattagaa gattgtctgc      5160
     tgttaaaaga atggccagaa aaatatcaaa cccatcaggt tataattttt taatatttta      5220
     tattagatac aatacatatt agttaatatt attatttttc tttatttggt tgttgttttc      5280
     tcagtaggat caccagactt cttaactcct aatcaaacta ccccaaacgt aaacacattg      5340
     tttggggtag attactctgg aaatgtctta tcggatataa caaatatatc gggagaatcc      5400
     atcgtctcta ccattagatt aatgtccaat aagaagaaaa aagtatcaaa tgagcaaggt      5460
     tcgatttata tttgaaagta gctatttatg ttatgtttta gtatgtttgt ctaatgtcca      5520
     atagtcaaac agaaattata ttgtttaata tttttgtttg ttgattgtta ggagtccccc      5580
     attcaacwaa attacaatca aaggagaatt ctgcaagtat tgtacgtgac aacacgctca      5640
     atgacgaaga aattgatcat tctgaagcaa tatattctga tagtggtata atgttaatca      5700
     tacttttaga attgccacct ttatataaaa agtataaaat tgttttattt gtgctacttt      5760
     catgttttct tctgtctaca gataggtcag aggaattcga tgatcatata tttgactgta      5820
     gtagtcaaga agagtatgag tcagacaaag attcaccgag cgatcaagtt gttggaccaa      5880
     ataatatgat tgacatgaaa gatttgttaa gaaggaattt aaacaaggag tttgctgcag      5940
     cagcttcgaa caaagaggat ggcagttcat ccactagcgg taataatttt aaaacatata      6000
     ttatatatat tagaaacaag gaaaaacaac atgtattgat gtttgttcga ttcaggttat      6060
     catgacgaag gtgatgcgaa tcacacatgt gtgcattgtg gtgcaatttt ctggtacggt      6120
     gaaagactaa atagaagaag gaagagtgct aatccggttt atacaggatg ttgtatgcaa      6180
     ggacagattg ttctacctat gctaaaagaa tcacctgaat atatgtggtg gttgcttaca      6240
     agcgaccatc cagatgctaa aaattttaga gcaaatatca gaccatacaa catgttgttt      6300
     tcattcacat ctattggtgg caaggtggat cgatcagtta aaaagggacg tggtccatct      6360
     atgtttgctc tacaaggaga aaactatcac ttgataggcg cgttgaaacc aaaacctggc      6420
     gattatgcaa aattccaaca gctttatatc atggacactg ataatgaagt tgacaatcga      6480
     attgaagtta tgaggtaagt catagtttta taaatgagct ttatgaaaaa atttatattt      6540
     taaaggcagc taatacattg tatttattat atgtcttttg taattataca aaattgcagc      6600
     aaaggtaata atggtgggat ggaaggtggg aaacaaaagt tcaagaaaga aacagtttca      6660
     gctttgctaa agatgttgga caagataaac cctcatgttg caaattttag gattgcccgt      6720
     gatagattca acatagagaa agaagaggca aattttcata tgaggattat atctaaacgc      6780
     gagacagatg ggagagtgta taaccttcca tctgtagctg aagttgctgc attgatacct      6840
     ggagatttcg acgacaatct agataaaaga gatatagttc tacagatgaa gtctggaaag      6900
     ttaaggagaa tacatgaatg tcacgtttca tatctagctc ttcagtatcc attgttattt      6960
     ccaaaaggag aggatgggta taggcttgga ataaaaaaaa ctcctaccaa aacttcaaaa      7020
     ggaaagaaga agcaggaaga tgttagtatg aggcagtggt ttgactaccg tttacaagag      7080
     agaaaagatg agaagcacat cctccttcgc tcaaaacgtt tacttcaaca attcatggtg      7140
     gacgctttta caatgataga gtctaatcgg ctaaggtata ttaaaaaaaa tcagacgaag      7200
     ttgcgcagta ccaacaagca ggcagttcaa gatgcttctg atgctggaga taatgatctt      7260
     tctaataaag gaaaaagttg tattattcct ccatctttca ccggtggtcc agcttatatg      7320
     cagcagaact acttagatgc aatgggtacc tgtaaacatt tcggctttcc cgacctgttt      7380
     ataaccttca catgtaatcc taagtggcca gagatcacaa gatttgttaa agagcggaag      7440
     ttgaatgctg aggacaggcc ggatatcatt tgcaggattt ataaaatgaa actcgacaac      7500
     ttgatggatg atctaacaaa gaatcatatc tttggcaaaa ccaaatcagg tactacatga      7560
     tttcatattt ttatacatat atttcatgaa ttttaattta caagtgacat taactcataa      7620
     ttgatatgtt gaaacagcta tgtatacagt agaatttcaa aaaagaggtc ttccacatgc      7680
     tcacataatt gtttggatgg atcctagata caagtttcct acagctgatc atgttgacaa      7740
     gattattttt gccgaaattc cagataaaga aaaagatcca gagctatatc aagctgtctc      7800
     ggaatgtatg attcatggac catgcggatt ggttaatcct aattcgccat gcatggaaaa      7860
     tggtaaatgt tccaagtatt atccaaagaa ccatgttgag aacacgtctc ttgacaatga      7920
     aggttatcca atatataggc gcagagatac tggtcgtttc atcgagaaga ataagtatca      7980
     atgtgacaac cggtatgttg ttccatataa cgatgtccta ttacggaaat acagggctca      8040
     catcaatgta gagtggtgta accaatccgt ctctgttaaa tacttattca agtatgttaa      8100
     caagggacct gatcgtgtaa ccgtctctgt agagcctcat cgaaaagaag ttgtctccga      8160
     gcaaaacaat gtaggagaaa caaataatga tccacaagaa cgaaatcaag ttcaggatta      8220
     ttttgattgc aggtactttt cattatttta tttcatttta ttgtaaacat tcttaagaga      8280
     ctatttgaaa tataaaactt aatgaaaaat aactcaaatg tcgttttaca gatacgtatc      8340
     tgcatgtgaa gcgatgtgga ggattagagg gtatcctata cattatcgac aaacatcagt      8400
     aactaaactt acgttccatg agaaaggcaa gcaacctgtt tatgtcaagg aaggtgagac      8460
     tgctgaatct gttttgtata gagtgaacaa tgatgagact cagtttactg catggttcga      8520
     gcttaataag cgtgatccgg aagcggcaaa acttttatat gaacaaatac ctaatttcta      8580
     tacgtggaat ggtaaagata aggattttcg cagaagaaaa atgccaggtt ttgttgttgg      8640
     tagaataaat catgtacctc caaagataga tgatgcatat caccttcgca tccttattaa      8700
     caacataaga ggtccaaaag gttttgatga tatcaaaacc gtcgagggtg ttgttcataa      8760
     aacatacaga gatgcatgct atgctctagg tttgcttgat gatgataagg aatatatcca      8820
     cggtattgag gaggctaatt tttggtgttc tcctaagtat gttcgcaagt tgtttgttat      8880
     tatgcttatt tccgaaagct tgagttcccc agccgttgta tgggaacaca cttggaagat      8940
     actgtctgaa gattttcaga ggaaagtaag agataagtta aaacgtccag gttagttaaa      9000
     ttatttttta aaatgtaata tacaattttt taaatgtttt tttacatatt ttattacatt      9060
     caacctaata ttaatgtata tgcagaatac atattgcctg acgaagacag gattcagtta      9120
     tgtttacaag agctgcaaaa aatattgaaa cggcatggaa cagatctttg gaggtataag      9180
     atgttgccgc agcttgaacc tggcgatgaa cctgccttta atcagttgat cctcgatgag      9240
     cgcaactaca atcgtgaatc attgaaaaaa aaacatgata attggttaaa gatgctaact      9300
     ccggaacaga agaaggtata tgatgaaatt atggatgttg tccttaatga caaaggaggt      9360
     gtttttttct tatatggttt tggaggaaca tggaaaacct ttttgtggaa ggttctatcc      9420
     gcagcgataa gatgtaaagg agatatttgt ttaaatgttg cgtcaagcgg cattgcatct      9480
     ctgttattag aaggtggccg aactgcacat tctaggtttg gtattcctct aactcctcat      9540
     gagacctcaa catgcaacat ggagcgtggt agtgatcttg ctgaattagt aacagcagct      9600
     aagttgatta tttgggatga agctcctatg atgagtaagt actgttttga gtcattagat      9660
     aagagtttaa aagatattct atcgactcca gaagatatgc cgtttggtgg aaaagtaatt      9720
     cttttcggag gtgattttag gcaaattctt cctgtcatcc ctgcagccgg tagggaactg      9780
     attgtcaaat cgtcactcaa ttcgtcttat ctttggcagc attgcaaagt tttgaagttg      9840
     accaagaaca tgaggcttct ccaagatata gacataaatg aggcacgtga gattgaggag      9900
     ttttcgaaat ggatccttgc agtcggcgag gggaaactaa atgagcctaa cgacggagta      9960
     actcagatac aaataccaga tgatattctt atacctgaag gagacaaccc tatagaatcg     10020
     atcattaaag cagtctatgg tacaaccttt gctcaagaga gagatccaaa gtttttccaa     10080
     gacagagcta ttttgtgtcc caccaatgac gatgttaact caattaacga tcatatgctt     10140
     tccaagctaa caggttagtg aattaacttt ggatattact caaaattata catataactt     10200
     tatccgctgt tacttataat agagtagatg acaatgaact actactcttt gcaggtgaag     10260
     aaaggattta tcgaagttct gattctattg atccttctga cacacgtgca gataaaaacc     10320
     ccgtatatac gcctgatttt ctcaataaaa tcaagatttc tggattacct aaccatttac     10380
     ttcggttaaa agttggttgc ccagttatgt tgttgcgtaa tcttgatccg catggaggtt     10440
     tgatgaatgg tacaagactt cagattgtaa gacttggaga taaactggtg caaggacgta     10500
     tattaacagg tactagagtt ggtaaactgg tcattattcc caggatgccc ctaactcctt     10560
     cggatcgtag attgccattt aaaatgaaaa ggaggcagtt tcctttatct gttgcatttg     10620
     cgatgacgat caataagagc caaggccagt cattaggcaa tgttggtata tatttaccga     10680
     agcctgtttt ctcacatgga cagttgtatg tcgctatgtc tagagtgaaa tcaaaggcag     10740
     ggctgaaggt tcttattaca gacagtaaag gaaaacagaa gaatgaaaca acaaatgttg     10800
     ttttcaaaga aatattccaa aacctttagt agattatttc ttcaggtatg atttatttat     10860
     tttgattatt ataaaataaa tatcattgta caaaattata taacatgcta acttagtcgt     10920
     ttttatattt gcaggttgga ataattatta aaagcatttc gttttcccat tttcttaatg     10980
     caagtttttt taataccagt ggagaattat gtagtctatt cttttttctt tcgtttattt     11040
     ttttaataca ttatgagttt gaagtatgaa gaaagacatt ttccaattat tatttgtcaa     11100
     attttataat tcacttacat gttaatgaca tacacgaaaa tgtacaaatc tactatgtgt     11160
     acacctacat atacaaaata tacaattacg ttcccaaacg tacataccaa ctatagacat     11220
     atattttcca tgctacaaac cgaggaaact acatatacta aacaaaatat ggtttgacca     11280
     gactaaatat atttagttgg taccaataat acatgataaa caactacatg tttaaagata     11340
     atgaaaatat agtagagttt ctgtggaata cacagaactg agattggatg attgattaaa     11400
     ccaaagatat cgtgcgtagc acggatactg acctaat                              11437
//
ID   ATHILA4_I   repbase; DNA   ; ATH   ; 2636 BP.
XX
AC   .
XX
DT   05-JAN-2001 (Rel. 6, Created)
DT   05-JAN-2001 (Rel. 6, Last updated, Version 1)
XX
DE   ATHILA4_I is an internal portion of the ATHILA4 endogenous retrovirus
DE   - a consensus sequence.
XX
KW   Gypsy-like endogenous retorvirus; ATHILA superfamily; internal portion;
KW   gag; pol; ATHILA4_LTR; ATHILA4_I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2636
RA   Kapitonov V.V., Jurka J.;
RT   "ATHILA4_I.";
RL   Direct Submission to Repbase Update (00-JAN-2000).
XX
CC   [1] (Consensus)
XX
CC   ATHILA4A_I is an internal portion of the ATHILA4A endogenous
CC   retrovirus. There are several copies of ATHILA4_I in the genome;
CC   they are ~93% identical with the consensus sequence.
CC   Apparently, ATHILA4A is a non-autonomous element; its internal
CC   portion encodes one protein, ATHILA4Ap, which is related to
CC   the "ORF1" proteins encoded by ATHILA and retroviruses expressed
CC   in Vicia faba cells (GenBank GI: 7488857 and 2522227).
CC   ATHILA4A was active in the A.thaliana genome relatively recently
CC   since its proviral copies are flanked by 89-97% identical LTRs.
CC   There is ~80% identity between 160-bp 5' ends of ATHILA4A_I
CC   and ATHILA4_I.
XX
SQ   Sequence 2636 BP; 736 A; 560 C; 561 G; 779 T; 0 others;
     aatttggcgc cgttgccgaa gttctctacg attcaccatt agattaggat tagaattttg        60
     tctaagcttt tgtttttgtt tttcttttta tttacttagt ttttctcttt tctttttctt       120
     gtgtgtttca ggtgtttgtc taatcacaga accaggacca aacgagaaac atgaacgaga       180
     gtaagattgc tgggatcatg gctaagctta acgcggtcca caatcaactt gtggaggatg       240
     tcgattatgt tggtagcaga ggttttccga atcagagatt tgatcaccaa caaggctaca       300
     gaggttccta tgggaatggt ccaactagct acactcagaa ttctcagttc cagcaaccgc       360
     ttcagaatag caatagtttc agcttcacaa ggaactatga tcttgcttct taccaagccc       420
     cccctccacc cgcacctaga agcaagatag aatcattgct ggaacagatt ctggaaggtc       480
     aacagaggat cttagagaga cctatcccta gatggaatga gagcagcctc actacttctt       540
     ggcatgctgc ttcaatggaa agtgagtatg agttagtgaa gattgaggag agtgacgatt       600
     ttgaagttgc agaggcagtg tcgaccgaca ccaacccttg gtgtcgatcg acaccatcgc       660
     atatatacga gacatcaggc tgtgacgaag caaaatcgac caggctcgac attgatctcc       720
     agaatcgctc gacacacatt gatagtgtcg accgacacca cctgggtgtc gatcgacacc       780
     agtaccaacc tgaggaagtg tcgacgtttg acagagcaga atcgaccgag attgacagag       840
     caggatcgat accagatagt agtgtcgacc gacactcacc tagtgtcgat cgacactgga       900
     cgcagactgc accaatcagc cttgactttc cacctgttgc tgaactagtc tacacacctg       960
     aaattccttg tccattgcct caacagtata tgcaagagat tcaggaggag cgctgcaagg      1020
     ctccacagca tcaagaagac aaaaggaaga caattatcgt ctcagaacag atttcagagc      1080
     tgaattgtca acatgctaag gaaagtcgag ttgtagcacg agtgtcgatc gacaccacca      1140
     ctcgcgtcga tcgacacaca tcactggttg aagcaaaatc atctccgata gctacttttc      1200
     aagctgggat cactgctata agtccaggca ctactgtcac gtcacccact gcacctctca      1260
     tacttcatcc acctcctaaa cggctaaggt actcatctcc tcctcctaaa cctccagatt      1320
     tcatcaataa gactttaaaa ttttcaaaaa ctgttttacg gttaagcaag ccacgagttt      1380
     ctcgtcgagc gcttgttcgt tcttttgatg attgtgcaag aaaaaggagt attccaccca      1440
     tacctgagtc ccaccctgct gatgctcctc tcttcctaga tagacctcat gcgctaactg      1500
     cttatacgcc agcatggatg atgagaggtc tttctccgcg atatttactg ccaccatctg      1560
     atccacctga tccccatatt ccatcaaagt caagctattg actataaaca agcgcttagt      1620
     gggaggcaac ccactggtat gatttttatt tttctttttc ttttatttta tttttttctt      1680
     tttctcgctt actccggatt tgaatgccac tggggacagt gtcgtttaag tctgggggag      1740
     gcgcttacta actacgtttt tctttttgag tcttattctt attcttattt ttcttttttg      1800
     agtcgtttta ttgagtcaaa attttgttag gaattatgat ctctattctt tagattattg      1860
     cttggttgat taatgctgca ggttcgactc aatccgacta ttggaaaatc tagatggcaa      1920
     accaacaaac ttgaggatat cctggtttcc aacacaacca ctaaggctgg agctaatctc      1980
     actgctcttc cttttacctc ttcaaacggt tagtattcat agatcttgac tccttgttca      2040
     tacctgatat tgagaccaat gtgataaaaa gaatgtgttc ctctcccctt ataaaaagaa      2100
     aaacaaaatg agagattgat acgattttca gatagtgtat aggggtagga atgtttccta      2160
     tgaccccatt attatacatt atttggaatg atcaattaca aaggttggaa atatgccgag      2220
     ggtgtcgatc cagtatgcga gttccccttt gtttactctc taaaaagaat aagtctgggg      2280
     gagagaaaga acaccaaaga aaaataaaat ataaagaatg gtcgatttat catggtatag      2340
     tacaagaatg agtctagaag gatcttgaat gttagcttgt ttgatgagac ccagcgatga      2400
     aagcctggtg gatatagtag tggaacttag gtatggaatc tagaatgttg tgtaagcttg      2460
     cagagaagta catgttggtt aggatttgat tagaactgct aggcatatgg atttggttag      2520
     aatgatcatg gcaatagact agagaatgtt gggagttcct gtgttttcaa acctcttcca      2580
     cgggttcggc ttttgtgttt tgcttgaggg caagcaaaag ctaagtctgg gggagt          2636
//
ID   ATCOPIA6LTR repbase; DNA   ; ATH   ; 119 BP.
XX
AC   AF039372;
XX
DT   12-APR-1999 (Rel. 4.03, Created)
DT   12-APR-1999 (Rel. 4.03, Last updated, Version 1)
XX
DE   LTR from ATCOPIA6 LTR-retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; LTR;
KW   LTR-retrotransposon; COPIA superfamily; ATCOPIA6I; ATCOPIA6LTR;
KW   EVELKNIEVEL.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RA   Henikoff S., Comai L.;
RT   "A DNA methyltransferase homolog with a chromodomain exists in
RT   multiple polymorphic forms in Arabidopsis.";
RL   Genetics (1998)In press.
XX
RN   [2]
RA   Henikoff S.;
RT   "ATCOPIA6LTR.";
RL   Direct Submission to Repbase Update (19-1997)HHMI, Fred Hutchinson
RL   Cancer Research Center, 1100 Fairview Ave. N (A1-162), Seattle, WA
RL   98109-1024, USA.
XX
RN   [3]
RP   1-119
RA   Kapitonov V.V., Jurka J.;
RT   "ATCOPIA6LTR.";
RL   Direct Submission to Repbase Update (00-MAR-1999).
XX
RN   [4]
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
DR   GenBank; AF039372; Positions    7889    7771.
XX
SQ   Sequence 119 BP; 47 A; 16 C; 15 G; 41 T; 0 others;
     tgtaagggag aaatgactaa ggatataatt gtaaattata gatacctaat tactcttgta        60
     atcactatat atattgtaca aacatctatg taataaacta ttgagcctca tttcataca        119
//
ID   ATR1        repbase; DNA   ; ATH   ; 637 BP.
XX
AC   .
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   An AT-rich repetitive sequence (a consensus).
XX
KW   ATR1.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-637
RA   Rounsley D.S., Kaul S., Lin X., Ketchum A.K., Crosby L.M.,
RA   Brandon C.R., Sykes M.S., Mason M.T., Kerlavage R.A., Adams D.M.,
RA   Somerville R.C., Venter C.J.;
RT   "Arabidopsis thaliana chromosome II BAC F26C24 genomic sequence.";
RL   Unpublished.
XX
RN   [2]
RP   1-637
RA   Jurka J., Ma J.;
RT   "ATR1.";
RL   Direct Submission to Repbase Update (00-JAN-1999).
XX
CC   [2] (Consensus)
XX
CC   Possible DNA transposon.
XX
SQ   Sequence 637 BP; 277 A; 59 C; 55 G; 244 T; 2 others;
     atktaaraat tattctaagt tagatttatt tagttctgat gtaatctttg ataaaaatta        60
     tagtataaga ttaataatcc tactatatta tttgggaagt acattttaaa tgtaacctta       120
     atttttgtaa gtaattacat aggtatgcca ttagaaataa aattttaaag agtaaattaa       180
     tttatctctt taaggattaa aaagtcaaat actaatttaa ttaattaaat ttaattaaaa       240
     aacgaaatac attattaatt tccaaaaata ataaccaatc aaaatcaaca tataagattt       300
     gatatctaaa ttttaattaa tttaatttaa ttagaaaaac gaaatacatt attaatttcc       360
     aaaaaagtaa ccaattaaaa tcaacaaatt agatttgata tctaaattat catattaatt       420
     ttttattaat tattatagtt cacttctcat ctttatatga ttctattttt gcgaaaaaat       480
     aatatcatca ttataaaaaa ataattagag ttttttcgca tatgccataa tttgaatttt       540
     taaaaacgaa tataaactgt tcaatacatg aaaaaatatt ataacgggtg aaaaatagat       600
     ttaagaaaac tttctactga gtaacgggtc ataattt                                637
//
ID   TAG2        repbase; DNA   ; ATH   ; 3094 BP.
XX
AC   AF120335;
XX
DT   10-NOV-2000 (Rel. 5.1, Created)
DT   10-NOV-2000 (Rel. 5.1, Last updated, Version 1)
XX
DE   TAG2 is an autonomous DNA transposons from HAT superfamily.
XX
KW   hAT; DNA transposon; Interspersed Repeat; HAT superfamily;
KW   Autonomous DNA transposon; transposase; 18-bp TIR;
KW   8-bp target site duplications; TAG2.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-3094
RA   Henk D.A., Warren F.R., Innes W.R.;
RT   "A new Ac-like transposon of Arabidopsis is associated with a deletion
RT   of the RPS5 disease resistance gene.";
RL   Genetics 151(4), 1581-1589 (1999).
XX
RN   [2]
RP   1-3094
RA   Henk D.A., Warren F.R., Innes W.R.;
RT   "TAG2.";
RL   Direct Submission to Repbase Update (15-JAN-1999)Biology, Indiana
RL   University, Jordan Hall 142, Bloomington, IN 47405, USA.
XX
DR   GenBank; AF120335; Positions     114    3207.
XX
CC   TAG2 is a HAT-like DNA transposon; it is flanked by 18-bp
CC   terminal inverted repeats. Its copies are flanked by 8-bp
CC   target site duplications generated upon transposition in the
CC   genome. TAG2p transposase is encoded by 2 exons:
CC   CDS join(830..2149,2316..2729).
XX
FT   CDS           0..0
FT                 /product="TAG2p"
FT                 /translation="MNRHMRSCEKTPGSTPRISRKVDMMVFREMIAVALV
FT                 QHNLPYSFVEYERIREAFTYANPSIEFWSRNTAAFDVYKIYEREKIKLKE
FT                 KLAIIPGRICLTTDLWRALTVESYICLTAHYVDVDGVLKTKILSFCAFPP
FT                 PHSGVAIAMKLSELLKDWGIEKKVFTLTVDNASANDTMQSILKRKLQKDL
FT                 VCSGEFFHVRCSAHILNLIVQDGLEVISGALEKIRETVKYVKGSETRENL
FT                 FQNCMDTIGIQTEANLVLDVSTRWNSTYHMLSRAIQFKDVLRSLAEVDRG
FT                 YKSFPSAVEWERAELICDLLKPFAEITKLISGSSYPTANVYFMQVWAIKC
FT                 WLGDHDDSHDRVIREMVEDMTEKYDKYWEDFSDILAMAAVLDPRLKFSAL
FT                 EYCYNILNPLTSKENLTHVRDKMVQLFGAYKRTTCNVAASTSQSSRKDIP
FT                 FGYDGFYSYFSQRNGTGKSPLDMYLEEPVLDMVSFRDMDVIAYWKNNVSR
FT                 FKELSSMACDILSIPITTVASESAFSIGSRVLNKYRSCLLPTNVQALLCT
FT                 RNWFRGFQEVGNIHILNSFIIVNLYGFWTAAFRLIARFFLL"
XX
SQ   Sequence 3094 BP; 898 A; 522 C; 651 G; 1023 T; 0 others;
     tagaaccgtc aattgggcat ctgaccatgg gctaagccca gtccacaaca ttatggacag        60
     tccatggtcg gcccgtaaag aaaacgggtt aaatggtcta aagaccaatt atgtccacgg       120
     gtttaatggg ctagcccaca cggtctatgg ttggcccatc aagtttctcg acacatcaat       180
     tttcttctct tctctctccc tcggcgacga agctccctct ctctctttct cgcttcgacc       240
     tctctctcaa ctcctactcc ggttagttct actagaatat gaatccgttg attagaataa       300
     gttctctaag tccttatgca atttcatcgc tttgttcttt tctattcctt aattgtgatt       360
     ctgcatatgc tttctttgat ttcagcttgt gggtttgtcc aaatttcact tgtttgctat       420
     tctttgttat tctctctctc ccttcctttg atgccaacca tgtgtttgat ggaatgcctc       480
     acagaatatg tagagttttg ttttggtaga gcttgtaatt acttgtgtaa agcttggtgt       540
     ttatgtatgg agctaagtgt atgaacgttt agtgtgtgtt tgctaatgtt aatgaacgtt       600
     tagagcttgt aattaagtaa tcgtttctca ccacaatcca tcacttgttt gaccaaacgt       660
     gcaaatattg tgagcagact tatcacttga atctgagacg aaatggtact aataccatga       720
     atcgtcatat gagatcttgt gaaaagactc ctggaagtac acctagaatt agcagaaagg       780
     tggatatgat ggtctttaga gaaatgattg cagtggcttt agttcaacat aatcttccat       840
     attcgtttgt cgaatatgaa agaattagag aagcctttac atatgctaac ccttctatag       900
     aattttggag cagaaatact gcagcttttg atgtctacaa gatttatgaa agagagaaaa       960
     ttaagcttaa ggaaaagtta gctataatcc cgggtagaat atgcttaaca acagatttgt      1020
     ggagagcttt aactgttgaa agttatattt gcttaacagc tcattatgta gatgttgatg      1080
     gtgttctgaa aacgaagatc ttatctttct gtgctttccc gcctccacat tctggagtag      1140
     ctatagcaat gaagcttagt gagctgttga aagattgggg aattgagaag aaagttttta      1200
     ctttaactgt ggataatgct tctgcaaatg atactatgca aagcatttta aagagaaagc      1260
     tacaaaaaga tcttgtctgc agcggagaat tctttcatgt gagatgttca gcacatatcc      1320
     taaacttgat agttcaagat ggtttggaag tgatatctgg agctttggag aaaattagag      1380
     agactgtgaa gtatgtgaaa ggatctgaga ctcgagaaaa tttatttcag aactgtatgg      1440
     atacaattgg aattcaaaca gaggcaaatt tagttttaga tgtctcaacc cgctggaact      1500
     ccacttatca tatgctctca cgagcaattc agtttaagga tgtattgcgt agtcttgcag      1560
     aagtagatag gggttataag agtttcccat ctgctgtgga gtgggaaaga gcagaactga      1620
     tatgtgacct tttgaaacca tttgctgaga ttacaaagct gatttcgggt tcgtcttatc      1680
     cgacagcaaa cgtgtatttt atgcaagtat gggcgattaa atgttggctg ggagatcatg      1740
     atgattctca tgatagggtt attcgtgaaa tggtggaaga tatgacggag aaatatgata      1800
     aatattggga agatttcagc gacattcttg cgatggctgc agttcttgat ccaagattga      1860
     aattctcagc tttagaatat tgttataata ttctgaatcc attgaccagt aaggaaaact      1920
     tgactcatgt gcgtgataag atggttcaac tatttggagc ttataaaaga accacatgca      1980
     acgttgcagc aagcacttct caatcttcac gaaaggatat cccatttgga tatgatgtaa      2040
     gttgctaatt ttgtgtgttt acagtattgt tcttgtatgt ttgtttgttg tgatagttag      2100
     tggctatgaa aatgcattct tatacttagt gagaatgggt tgtctgttgt gattgttgaa      2160
     ctatacggtt ggtcatattt tcttttgttg gtcatatttc aggggtttta ctcttacttt      2220
     tctcaaagaa atggaactgg aaaatcacca ttagatatgt acttggaaga gcctgtgtta      2280
     gatatggtct cttttagaga tatggatgtt attgcatatt ggaaaaacaa tgtctcgcgt      2340
     tttaaagaat tgtcatcgat ggcatgtgat atcttaagca ttccgatcac taccgtggca      2400
     tcggaatcag cttttagtat aggtagtcgt gtgcttaaca aatatagaag ctgcctttta      2460
     cctactaatg tgcaagccct cctatgtact agaaactggt ttcgtggatt tcaagaagtt      2520
     ggtaatattc acatcttgaa ctcgtttata atagtaaact tatatggctt ttggactgca      2580
     gcttttagat taatagctcg gtttttctta ttgtagaaac tgatgagatc caaggtcaag      2640
     aggacacaaa caccatcctt gcatgaaagt ttcaagactg ggaagaaaca ggtacatggc      2700
     tgttctctta aactctgagc ctatggttat gtgtttatta ttctcagtct gtgacttaga      2760
     agcttatgta atcgtttttt cttttctttg tttctcataa acaaaggttt ttgcttaaga      2820
     aacaaggaaa aatagaacca tgtaagacac aaacaaagct ccaaacagta acgcagagac      2880
     gaaatgcaag ttgtgccacg tcaaaataaa cttctttaag tgtagttgaa aaatcatggg      2940
     ctgaccatgg gctgaccatt ggacaatggt ccttaatggt cttggaaaaa ttttcagacc      3000
     atgtccatta aagaccaacc ataaaaaccc atgaaagatg atggtccaag tggacatgac      3060
     cattgggctt tggacagccc aattgacact tcta                                  3094
//
ID   HELITRON4   repbase; DNA   ; ATH   ; 17261 BP.
XX
AC   .
XX
DT   01-FEB-2001 (Rel. 6.1, Created)
DT   24-MAY-2001 (Rel. 6.2, Last updated, Version 2)
XX
DE   HELITRON4 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; ATREP; helicase; replication protein A; HELITRON4;
KW   HELITRON class.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-17261
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON4.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
RN   [2]
RP   1-17261
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON4.";
RL   Update (2001).
XX
CC   [2] (Consensus)
XX
CC   HELITRON4 is a DNA transposon that belongs to the HELITRON
CC   superfamily. It encodes an 1526-aa protein, ATHEL4p, composed
CC   of the rolling-circle and DNA helicase domains, and three
CC   RPA70-like proteins, ATRPA4H1p, ATRPA4H2p, and ATRPA4H3p.
CC   There are five copies of HELITRON4 in the genome;
CC   they are ~95% identical to the consensus sequence.
CC   ATHEL4p is encoded by 12 exons (ATHEL4p CDS: 10079-10184, 10254-10502,
CC   10598-10684, 10921-10980, 11045-11483, 11587-12527, 12626-12839,
CC   12928-13233, 13320-13969, 14088-14936, 15274-15789, 16058-16221).
CC   The 741 aa ATRPA4Hp1 is encoded by 14 exons.
CC   (ATRPA4Hp1 CDS: 521-667, 771-1035, 1543-1630, 1711-1840, 1918-2117,
CC   2245 - 2368, 2451-2663, 2756-3058, 3775-3846, 3985-4255, 4354-4468,
CC   4550-4692, 4778-4862, 4954-5023).
CC   The 269 aa ATRPA4H2p is encoded by 14 exons.
CC   (ATRPA4H2p CDS: 5660-5797, 5890-6151, 6251-6365, 6461-6603,
CC   6701-6785, 6875-6941).
CC   The 236 aa ATRPA4H3p is encoded by 6 exons.
CC   (ATRPA4H3p CDS: 7812-7949, 8043-8313, 8424-8538, 8638-8675,
CC   8864-8948, 9026-9089).
XX
FT   CDS           0..0
FT                 /product="ATHEL4p"
FT                 /translation="MPAGIDLSSPIQSYRRHLTYDDNLPSDANDSQYPFG
FT                 NHRPNSNLSSSFTTTNLEQGETSNPSKDKRLFRNFTNDIPLQINGVTHCG
FT                 RGDRTDDPILPEFLQSGNQMNLGECDSNGESDGSESDIYDDLENGFQDEV
FT                 DYDSYTNYKQKGKEHEDFERQFNMNSRKNKTVYIDHGDPIYSCEYCGAIM
FT                 WHGERIEKTVKNKKPKFTSCCLQGQVKLPFLKNSPELLYALLTNDDEISR
FT                 HFRENIRAYNMIFSFTSLGGDTENSVRASGGPQMFQIHGENYHRIGSLKP
FT                 DNDIPPKFMQLYIVDTENEVDNRSEALSNGVNADKYKKKELRKEIIDAVI
FT                 KLLNSINPYVSHLRTARDRFNANPEETLHMRIVSKREKDGRVYNVPTASE
FT                 VAMLIPGDFTIDMPSRDIVVQEKSGKLQRISEILPCYLPLQYPLLFPYGE
FT                 DGFRTGIEKHQTGSGKKTKNKCISIRQWFAFRIHERKHEKHILLRSRRLW
FT                 QQFLVDSYTAIESNRLGYIKLNQSSLRADNYNSVQKASEEGKSDLKDQGL
FT                 ACYLPATFTGGPRYMRNMYLDAMALCKHFGFPDYFITFTCNPKWPELIRF
FT                 CGERNLRADDRPEIICKIFKMKLDSLMLDLTKRNILGKTSTSMYTIEFQK
FT                 RGLPHAHILIWLDSKCKLTKAEHIDKVISAEIPDKLKDPELFEVIKEMDG
FT                 SWSLWCGEPEMSIRRRTDDFVQKKDFKCDNRYVIPYNRSLSLRYRAHINV
FT                 EWCNQSGSVKYIFKYIHKGPDRVTVVVESSLNSKNKEKGKQKVNADTDGS
FT                 EPKKKNEVEDYFNCRYVSACEAAWRILKYPIHYRSTAVMKLSFHLPGEQF
FT                 IYFKGDEEVETVLNKADLDGSMFLAWFELNKVSKIARKLTYADIPTRFTY
FT                 DPKEKKFNLRKKGFAIGRINYVPRDIEDGYYLRILLNVVPGPRCFEELRT
FT                 VNGVLYKEWKDACEALGLLDNDQEYIDDLKRTSFWSSGWYLRQLFVIMLD
FT                 ALISPENVWAATWQHLSEDIQNDKRKYFNRPDLILSDEEKKLYALQEIDH
FT                 ILRRNGTSLTYYKTMPQVPRDPRFDTNVLILDEKGYDRDSLTKKHAEWIK
FT                 MLTPEQKSIYDNIIGAVNENVGGVFFVYGFGGTGKTFLWKTLSAALRSKG
FT                 DIVLNVASSGIASLLLEGGRTAHSRFGIPLNPNEFTTCNMKAGSDRANLV
FT                 KEASLIIWDEAPMMSRHCFESLDRSLSDICGNGDNKPFGGKVVVFGGDFR
FT                 QVLPVIPGADRADIVMSALNSSYLWSHCKVLTLTKNMRLYSEGLSVSEAK
FT                 DIKEFSEWILAVGDGEEFTFLSSDSLDPADIGGRNNPALTPDFLNSVKVS
FT                 GLPNHKLRLKIGCPVMLLRNIDPIGGLMNGTRLRITQMGPFILQAMILTG
FT                 DRAGHLVLIPRLKLTPSDTKLPFRMRRTQLPLAVCFAMTINKSQGQSLKR
FT                 VGIFLPRPCFSHSQLYVAISRVTSKSGLKILIVDDEGLLLSERFVKNFID
FT                 SMTATMKHPLSCPLNFRTSVLQLKNNSLHLYFGKLHKSIK"
XX
FT   CDS           0..0
FT                 /product="ATRPA4H3p"
FT                 /translation="MERMNLLSDIGVHSTKWSVYVKILGLCHHNPPRDGV
FT                 VTTMMLIDSKYNRIDATIQEGIIQWKYKDVLKEGFWYYMSDFRVVVNTMP
FT                 VRYSFCSKQIKFLRGTNMWHVPSLSTSRFFEFVAPIDVKNAAPQDMEFLS
FT                 DAMGIITRVSNIRRFPFVCRQRETDYEARYVKFTIADNMGKKIRCIAVGK
FT                 MCKNVLLSEFGFSKLYIDPKFEEIDIPTCLRGYMIEDDEDDVMMEVVEEN
FT                 "
XX
FT   CDS           0..0
FT                 /product="ATRPA4H1p"
FT                 /translation="MSLPLGLTYLSDVKPFKTNWRVRVKILHLWRQTKDA
FT                 SGETLDVIICDENGSKMQITIRKHYIGKFHRSIKVGDWKIIDNFTLSPST
FT                 GKYKISSLSYRMGFNHNTDVIKCDPVSDSVFLDLADFEGVKTESYDENVL
FT                 IGEISITSAFDVSEVIINPVHVPEVELFVKSLPSDGLALTIQDNYVNRDI
FT                 IKVKSDNFFDYPAKTIVDLLHGRDVGQWRILGSIFAIDTDWGWFYFGCPK
FT                 CNRKTELVKESTSTGKMVKTPMKPKFWCDKCQESITNVEARYKLHVRVMD
FT                 QTAEIKLMVFENNATKLIGKTSEELVDGQYEEIEDPTIIPDVITNLCGKT
FT                 FHFLVSVEKANIYGGKDIYKVTKVHFGTDIAKEESGLLEDTQYDPSTIGS
FT                 EEQGQLMLTNSSENCSDATNNELSTPSSKRGSAELSDMADQSSTTKKLCS
FT                 RVNSENGDDEIGTNVIIENADEVKVISDDAGSLLIEGVVKEIEPQTSKAK
FT                 GSTKLLRLWNWPPNYFGEEPTMILVDEKGHRIDALSPLHAYKEEMISTLR
FT                 EGKWYLLSNFEVVVANPLERFSSHVFQIKFLRKTTMEHVAPKIRCHFIEC
FT                 FDFYRIKNAAPIQKKFVVDAMGVIESVSPIGKIPWVAREWESDFASRYLT
FT                 FTIKDTLHQYMKCVAVGSSCEEFERKWYKKISDPNFKMEPVMIILRFWKI
FT                 LEFEGNPCLISVYGCSKVHIDPNFRGIDKNNYLRNFAGSDDEDDDIFMES
FT                 VESNF"
XX
FT   CDS           0..0
FT                 /product="ATRPA4H2p"
FT                 /translation="MADTNYIRDLSLHRNNHVLYVKILSIWDNQSMIFGT
FT                 PTTMILCDVKGTRIDARVPWGDYLNNFKPSLFEGKWYYIADFRLKRATSI
FT                 PKYSSFNYEIEFMWHTKMWPVSDRSDESSLQFIHADEVESESEDYVTDAI
FT                 GVISSVSTVARFPYVCREGETDYEARYVTFTIRDNLDRIITCVARGSACE
FT                 SFLTKFYRLIGMKTYNYEPITTVLRFFRASNFKGSKALISEHGCSRIFIE
FT                 ESFPDFDVTRYINWFACEDDGSVEGKIEYVVEN"
XX
SQ   Sequence 17261 BP; 5722 A; 2578 C; 3051 G; 5909 T; 1 others;
     tctatactat taagagagaa tgagggacag aaaatttcca agccatttaa gccattttcc        60
     aaaaacacgt tacaggaaaa aacaaacaaa acaaattaag ggtaaaagcg tcattatccg       120
     tgctcttcgc agccgacccg agccgcgtcc gtatccgacc cgtttgaatg acgcgcggat       180
     cctgattcac gtataatggg cctctattct atttctcatt tggcgtcaag gagaacagtt       240
     ggcccatttg cgttaaacac cactcttaga aaacatttct tgctcaatat tttgcctcct       300
     ttccaagata ttcttagttc ttgaagatat tctgcaaatc acaaccaatt aggtatgatt       360
     cctatattct attgagatag tatatttagt tatgatttca tataccaaaa aatccggtgt       420
     tgctctaggg tttcagaacc aagtcctaac cgtataaata ctcaagcaat atcatcaatt       480
     ctgtcagcat tacttttctt cgcagcctat cacataatca atgagtttac ctttaggttt       540
     aacgtatctt agtgatgtca agcctttcaa aacgaattgg cgtgtccgag tcaagatcct       600
     tcatctgtgg aggcaaacca aagatgcatc aggagaaacg ttagatgtca ttatatgtga       660
     tgaaaatgta tgagagaatg ctattgatta aatatatgaa tctatatata tttcggtttg       720
     aaacatttaa catgttctta tgtgtttttg tttatttggt tttgatatag ggatctaaga       780
     tgcagatcac cattagaaag cattatattg gcaagtttca caggtcaata aaggtcggtg       840
     attggaagat cattgataac ttcactttga gtccttcgac tggcaagtac aagatatcga       900
     gtttgagcta tcgaatgggc tttaaccaca acacagatgt gattaaatgt gatcctgtat       960
     cggatagtgt ttttcttgat cttgcagatt ttgaaggggt taagaccgag agttatgatg      1020
     agaatgttct aattggtacg tattttctaa attccctatc attcttttaa ctcaaacaaa      1080
     caagtgttat ggattttaat attaacagag tattctttac aatggcagac atattaggtc      1140
     aagtggtcag tgtgggaaaa gtggatgaga ttatggctca aaacaaacca aacaaaaaac      1200
     tagagtttca aataagagat gccaggcaag tcttctcaat tgttttcata taatttttga      1260
     ttcataataa ctatgttttc aaacaagtaa tattgaaatc gtttgttact atattgaagc      1320
     aatgagcgtt tgtcttgtac tttgtggggt gtgtttgctg agaaagtatt tagtgcttta      1380
     aaaagtgtaa agcatgacga gaagacagtg gttctgatac gctatgctaa aatcaataat      1440
     tttaaaggta ttcactcttc ccttaactat gtctaaagta atcatattgg atgtatatgt      1500
     gcatgtctta gttaacatat attgtctaat tctgttaact aggtgagatt agtattacaa      1560
     gtgcttttga tgtttcggaa gtcataatca atccagttca tgttcctgag gttgaactgt      1620
     tcgtgaaatc gtaagtgcaa aatatattat gaccttcttt gttctgttta aattcacaaa      1680
     catgttaacc agacaaatgc ttatttgcag actcccaagt gatggtcttg ctctcactat      1740
     tcaagataat tatgtgaacc gtgacatcat taaggttaaa tcagataatt tttttgatta      1800
     tcctgccaaa acaattgttg atttacttca tgggagagac gtaagtatat ttccactaat      1860
     tcctaaatta ctgtgtttag tttaagtacc tataattgtg attgtattga aaatcaggtt      1920
     gggcaatgga gaatacttgg ttccattttt gccattgata ccgattgggg atggttctat      1980
     tttggatgtc ctaaatgtaa cagaaaaact gagctggtta aagaatcaac cagcactggt      2040
     aagatggtca agacacctat gaaacctaag ttctggtgtg acaaatgtca ggagagcatc      2100
     acaaatgtgg aggcaaggta agaatgtttt ctattactct tttatcttgt acaagataaa      2160
     aaaaattgtt tctattggta tacagaaaat ataaaggttt ataagtgtat attaatttga      2220
     tatgtacaat acattttact ccaggtacaa gcttcatgtt cgtgtaatgg accagacagc      2280
     tgaaattaaa ctcatggtgt ttgaaaataa tgcaaccaaa cttattggga aaacttctga      2340
     agagttagtg gatggacaat atgaagaggt attaaatata tactgtcatt caagtattag      2400
     ctatatgtct atggtagaat gaagagtact aatgtgagac atgtctatag attgaggatc      2460
     ctacgatcat acctgatgtc atcacaaatt tgtgtggaaa gacattccat tttctggtca      2520
     gtgttgagaa agccaatatt tatggtggta aagatattta caaagttaca aaggtgcatt      2580
     ttggaacaga catagccaaa gaagaatcag gtttgcttga agacactcag tatgatccat      2640
     caacaattgg gtctgaggaa caggtatgat catattcacc ttaatacaat ttgttatgct      2700
     tattaagtgt tttgtactca tagaccaaat tatatttctc aattttgtga gttagggtca      2760
     attgatgtta actaatagca gcgagaactg ttctgatgct acaaacaatg aactgtctac      2820
     tccttcatct aagcgtggtt cagctgagtt gtctgatatg gctgatcaat cgagtactac      2880
     taagaagtta tgctctaggg ttaactcaga aaatggagat gatgagattg gaaccaatgt      2940
     gataatagaa aatgctgatg aggttaaagt tatttcagat gatgctggaa gtctactgat      3000
     agaaggagta gttaaagaga ttgagcccca aacctcaaaa gctaaaggat caaccaaagt      3060
     gaagacagaa agatacaagg aataaaatta gttatatgtt ttcacagttt ttttttggtt      3120
     ttggatttaa taaaagtcag aattttctga cttcgtttat gtttttcaat aagtattaag      3180
     aacattttca attgttattt tattgactat ttatgctgct ttatacattt acatgtattg      3240
     ctattttttt gagagatttt atttctggtt ttcactatct ttgttctact atatatttat      3300
     actctttatc ctaactctat tttcttattg aatagcaaag aaccggtttc gaaattatac      3360
     tgaaacagat gaaaacatca aaagatcttt ggaattttat agtcaatata cttgcatggt      3420
     atattaaata atttttgaaa agtaagatgt gatatatcag aaatataatt gttaaatctg      3480
     aattttcaaa aataaaccaa atcaatggat cttgaaaccc tcaaaagaag ctgtctaaat      3540
     tcaaaaaagt aatcattcat tggcaaaaat ttgaaattca tttctgatat aattattttc      3600
     gaaaaaataa gaagttacgt ttattggaaa gatcaataga ttctctcctt atctcattca      3660
     tcttccacac aagaaaaaac agtagagaag aaaaagagtt tttcttcaat gtcaaacttc      3720
     aagaacttct ctgatttgcg tcctaaaaaa acaaaatgtt ttgtctttgt taagctactg      3780
     aggttgtgga attggcctcc taattacttc ggggaagaac ctactatgat tttagttgat      3840
     gagaaggtat gaaacttcta tttacagttt ttatttctat aattgttgtt atttaccgga      3900
     tctcttgaat ataaacatcc atgcaatatc ttcgctgaga ttttatactc tatatatttg      3960
     atgagatttt atatatgatc tcagggacat cgaatcgatg cattgtctcc tctacatgca      4020
     tacaaagaag aaatgatttc tacactaaga gaaggaaaat ggtatctact ctcaaacttt      4080
     gaagtggttg tagctaaccc acttgaaaga ttctcttctc atgtgttcca aattaagttt      4140
     ttacgaaaga ctacaatgga acatgttgct cctaagataa gatgtcattt cattgagtgt      4200
     tttgatttct atcggatcaa aaatgcagct cctatccaaa agaaatttgt tgttggtgag      4260
     tattttagta gttattttcc ggattttaaa gtatagaatt tggcttacag atataaaatt      4320
     taaacttgaa tctttgttat tatcaattta cagatgcaat gggagtcatt gaatcagtat      4380
     ctcccatcgg gaagatacct tgggttgcta gagagtggga aagtgacttt gcatcaagat      4440
     accttacttt cacaattaaa gatactctgt aagtttttat actttctata ctattaagag      4500
     agatagttag gacttttgga atatttactg agttcacttc atattatagg caccagtaca      4560
     tgaaatgtgt tgctgtagga agttcttgtg aagagtttga aagaaaatgg tacaagaaaa      4620
     taagtgatcc taattttaag atggagcctg tgatgattat tctgcgtttt tggaaaattt      4680
     tagagtttga aggttagttt cttattactt cttagtctga tttttctcga gatcatttga      4740
     catttatgat tttcaaattc gtgtgattgt ttaacaggaa atccatgctt gataagtgtt      4800
     tatggttgtt caaaggttca cattgatcca aatttccgag gaatcgacaa gaacaactat      4860
     ctgtaatcta cagccttatt cttaagcatc gtttattcca tatgtagtat atatagatat      4920
     taactttgtt tgtttttggt atctgtttcg taggcgtaac tttgcaggat cagatgatga      4980
     agatgatgac attttcatgg agagtgtgga gtccaatttc taagttatcg atttacaatt      5040
     tgaattatga gaaaacaatt gtgctatgct ttatgaacta tgtttatttt cttctgttat      5100
     aagttggatt tcctgtgact actttatatt attttgctta tgtttgctta tgtttaccaa      5160
     cttctagcat gaaatggatt acaacccatg ataactaaaa tgacaagagt aaaagaagaa      5220
     tcatattacc ttaatgcagt gtgctatctt ctccgacttc aaattcctga aattatagta      5280
     agacaacaat gttagtatat ttactaaatt gtttagatta aatactgaag aattcgtttg      5340
     ggatctaaaa cataagcaac cattatttat atgtctactg aatccaaata ctttatcatc      5400
     attatctact taacatatca gcaatcatta gcaaagagac ttttctattt ttttgattgg      5460
     ctacagaatc ggttagcaaa taattatata ttgactaaag gatttgaacg gttatattat      5520
     atggaaacct ttcatataga ttcactgaat cgtttcaact ttcctctcca ttcaatatat      5580
     atatataaga caaagattag gttaacttca gtcaatctat cctctctctg aaatctgtat      5640
     caaaccattc aaacttccaa tggccgacac aaactatatc cgtgacttaa gtttacacag      5700
     gaacaatcat gtcctatacg tgaaaatctt aagcatctgg gacaatcagt ctatgatctt      5760
     tggaactcct actaccatga tcctctgtga tgtgaaggtt tgtgcgtaaa caatcttttt      5820
     ggtttcttat tttggttttt ggtttctatt atagttcaaa gaattttata tgtttgtctt      5880
     tttattcagg gaaccagaat cgacgctaga gtaccttggg gggattattt gaacaatttc      5940
     aagcctagcc tatttgaagg aaagtggtat tacattgctg acttccgatt gaagagagca      6000
     acttcaatac ctaagtactc atcatttaat tatgaaatcg agtttatgtg gcacacaaaa      6060
     atgtggcctg taagtgatag atctgatgaa agttctctcc aattcatcca tgctgatgaa      6120
     gtcgaatctg aatctgagga ttatgtaact ggtaatctaa gacttattta tatagtttat      6180
     gctttcttgc aattgtattt ccttagtact aagatttata agtatctgtt tgctctgctg      6240
     ttattgttag atgctattgg agtcatatca agtgtctcaa ctgtggcgag gtttccatat      6300
     gtctgtcgtg aaggggaaac agactatgag gccagatatg tgacatttac catcagagat      6360
     aatctgtaag ttaacaagta atatgtatat tgatattgaa attcgttagg aacagacata      6420
     tatttgtagt atggtaaatt tgtattttgg ttggttgtag tgataggatc ataacatgtg      6480
     ttgctagagg gagtgcgtgt gagtcgtttc tgacaaagtt ttatcgactt attggtatga      6540
     aaacttataa ctacgagcca atcactacag tcctccggtt ctttagagcc tctaatttta      6600
     aaggttagtg aaaattcgtg aatatgttag tcacattcct ttatgatgtt aaaccctgtg      6660
     acctataact aatcaccaga attctttaca aatgttctag gatctaaggc cttaatcagc      6720
     gagcatgggt gttcaaggat cttcattgag gaatcttttc cagactttga tgtaacacga      6780
     tacatgtatg tgaaagacat tagataaatt gtttttgtta attagatact aactattcaa      6840
     gtcaaaatga catcttttta tatttttgtt acagcaattg gtttgcatgt gaagatgatg      6900
     ggtctgttga agggaagatt gagtatgttg ttgagaacta atccaagagt cagattcgtc      6960
     tttccaatga tttgtagaag caatttacat tgctgttaaa aatcaaactt attatttcta      7020
     agttgatttt ggttttatct gatgaactat tgttggaatg tttgtttgaa ttatcataca      7080
     ttgtgttctt tttttttttt atggtttcag tttccagttc tcctatttga tgttgcaagt      7140
     tactatgttt attttcccta tgttttgtat tttctttaag catgtaagac tcataagcgt      7200
     ttgagtttca aatttctgtt aaaaatatta aatttccggt tattttattt tggttataac      7260
     ttagttcata tttacagagc attttcttat acaatctaag agttattagt atctaacctt      7320
     agatggaaat gatgagttcc actctttagc tcttcttctg taaaaaagga aaaatatgtt      7380
     aataaattag taaatttaat tcaagttcta ttacataaaa agtaaaatta caatacattg      7440
     aaacctccaa tacaagacaa aattcaaatt acctatatag tatcaatatg tatatactct      7500
     ttccataaca atatatgata tcttaactaa aatattctta gaatatactc tctaatatat      7560
     taagttcgta taaataacaa acttggcgat tacacttaaa attatatatt atatctatat      7620
     attaataata tttaatcaat atataacgtt tcagtttctc gatttttgga tgttctagaa      7680
     ctgttttctc aatgattgca actcttcaat ctgctataaa atagacaatt ccgactttgt      7740
     gtttacagtt tacttttatt tttctttgag tcttcctcta atttagagac cgacacgagt      7800
     tatcaatctc aatggagagg atgaaccttt tatctgacat aggtgttcac agtactaaat      7860
     ggagtgtcta tgtgaagatt cttggtctct gccatcataa tccaccgcga gatggtgttg      7920
     taaccacgat gatgctgatc gattcaaagg taagtttata aattagcata tcttacactg      7980
     tgacttgatg gtatttgaaa ccctaaattt ctaaatttaa taattttgta atttttatgt      8040
     agtataatcg aattgatgca actattcaag aaggcatcat tcagtggaag tacaaggatg      8100
     tactcaaaga gggtttttgg tattacatgt ccgactttcg agttgtggtt aataccatgc      8160
     ctgttagata ctcattttgt tcaaaacaga tcaagtttct cagaggaaca aacatgtggc      8220
     atgttccttc tctttcaaca agtagatttt ttgagtttgt ggctccgatt gatgttaaga      8280
     atgctgcacc gcaagatatg gagtttctat ctggtaatct cttattttct atttgagatc      8340
     atatggtact ctgttttcta taacttattt tcaactttat atcatgtttg ttctcttaac      8400
     ttacattata ttaaacgttt cagatgcaat gggtattatt acaagggttt ctaacattag      8460
     gagattccca tttgtctgtc gtcaaagaga gacagattat gaagcaagat atgtgaaatt      8520
     cacgattgcg gacaacatgt aagtcttttc ttaaggaaca atattttagt ctatttctac      8580
     tcttagaaga taatcattaa taatgtggtt agtgatgata ttgagttttc tttctagggg      8640
     aaaaaagata aggtgtattg ctgttggaaa gatgtgtgag tggtttgtga accactggtc      8700
     aaagagaatc agtttgatta cttacaatta tgaaccaatt gtcgctgttc tccaaaactg      8760
     gagaatcaca aattatcatg gtcattactt tgaatttgac ttctaaataa tactaaagat      8820
     tctgtcttca ttataatatt aacatgtttt taaaatatta caggtaagaa tgttctcctg      8880
     agtgagtttg gcttttcaaa gctatacatc gatcctaaat tcgaagaaat tgatattcca      8940
     acttgcctgt aagtatatat attttggctt tttttatact ttaattgtta acattactaa      9000
     ttgccaagat gattttgaaa tgcagccgcg gatacatgat tgaagatgat gaggacgatg      9060
     taatgatgga ggtcgttgag gagaactaaa gctatgatga agtgtgtgtt tggtttttat      9120
     ttttttaaag ttaaactctg ttctttttgt ttctttctat ctctcttaac gtgtcgattc      9180
     tattctattt tgtaatggtt taagaatgct ttatttgatg tatattaatc tatgtgaaat      9240
     caaaagtttc ctatcaaatg ttaataactt agttcttata aaaaaaacaa gaatttacct      9300
     taaaataagt agtcattggc ttatagactt gagaagaatt cataccaaga aagactctcc      9360
     caaccacaat tatttccttt agtgctcgag ttgatcctat aaaaaaaaaa aaagatcttc      9420
     atagattaga aaatgaataa tcgaattctc tttaagaaaa caaaataaca aagtttaaat      9480
     agatttaaca ataaattgga tcatgtaacc aattaataat tgtttccata taaatagttg      9540
     atatcttaat cagtttagtt aaataacata acagcaaata ttctgtcaat cttttctggc      9600
     cggagaacaa agaaaagagc acataactag gttaacatat tatagaaaag tcatttctca      9660
     taaggttttg agtgtttagc tatcacgttt tcactggtat cttttctttg ttctccatgt      9720
     caaaaagaaa aaaaattcat gaaactcaat cttcagattt gtctaatgtt attcaaaaca      9780
     caactgataa gcggtttaga catgaagaaa cttctgaaaa tacacccccg tcattcaatg      9840
     gaccaagtgt gaagaaatca gtgccagtta gttctgtttt taatagggtt ctaagtgata      9900
     ttacaaatca aagagttcat acaccaagca ttagccaaac gcctggcact ttggagtcat      9960
     gtttaacatc aaaaacaagt taagtttact gatcaatcta tattatatat ttaagcttta     10020
     taggttgtcc tatataacat aactacattt aacaagattt atttatgaaa tgttaacaat     10080
     gccagcagga atcgatcttt caagtcctat tcaatcatat cgaaggcatt taacatatga     10140
     tgataatcta ccttcagatg caaatgattc tcagtatccg tttggtaagt catggtttac     10200
     aacttggtga gtctcatgtt gtttaatact atctaacgtt ttgttatatt caggaaatca     10260
     tagaccaaat tccaacctaa gttcttcatt cacaacaact aatttggaac aaggagagac     10320
     atcaaacccg tctaaagata aaagattgtt tagaaacttt accaatgaca ttcctcttca     10380
     gataaatggc gtcacacatt gtggacgagg agacagaacc gatgatccca ttcttcctga     10440
     atttctgcaa tcaggaaatc aaatgaattt aggagaatgt gacagtaatg gagaatcaga     10500
     tggtaaatat taagcataac tgcaatgatt tccttattct tcactgttaa aataaactat     10560
     agtatgtgat gtataataaa cttttcttat tttttaggtt cagagtctga tatatatgat     10620
     gatcttgaaa atggttttca agatgaagtt gattatgatt catataccaa ctacaaacaa     10680
     aaaggtgtca agattactga actggttaaa aaaaaattat gagtttttgg atgatcttga     10740
     gaagagtttg cttgccactt ttggcctggg atgtcgtacc tctaatgaaa atatagagga     10800
     acattcttac ggtgtgttat attcaataaa ctttgtaaat gaattataat aaactttttg     10860
     caaatgctca atcaaggttg taacaaatct acaagctcta atgacatcta tgtttcacag     10920
     gaaaagaaca tgaagacttt gagcgtcaat ttaatatgaa ttcaagaaaa aacaaaacag     10980
     gtatgaatat atattagtac tctgtgtatc ctctatattt aacattttat gatttcaaat     11040
     gcagtataca ttgatcatgg tgatcctatt tactcatgtg aatattgtgg agctataatg     11100
     tggcatggtg agcgtattga aaagacagtc aagaataaga agcccaagtt tacatcatgt     11160
     tgtttgcaag gtcaagtgaa gttacctttt cttaaaaatt caccagaatt actttatgca     11220
     ttgctaacca atgacgatga aatcagtaga catttcagag aaaatatcag ggcttacaat     11280
     atgatatttt cttttacatc acttggtggt gatacagaaa atagtgttag agccagtggt     11340
     ggtcctcaaa tgttccagat tcacggagag aattaccata ggatagggag tttgaaacca     11400
     gacaatgata tacctccaaa gttcatgcag ttatatattg tagacacaga gaatgaagtt     11460
     gataacagat cggaagcact caggtgagtc cattccttat agtgttacta atgtttttgt     11520
     atataacatt gatgttgttt taatattggt tactgttcta aatttgactt atttgattct     11580
     taacagtaat ggtgttaatg ctgacaagta taaaaagaaa gagttgagaa aggaaattat     11640
     tgatgctgtg atcaaattgc tgaatagtat caacccttat gtatcacact tacggactgc     11700
     tagggacagg ttcaatgcta atccagaaga gactttgcat atgagaatag ttagtaaacg     11760
     ggaaaaggat ggcagggtgt ataatgtacc aacggcatca gaggtagcca tgttgattcc     11820
     aggagatttc actatagata tgccaagcag agatatagta gtgcaagaga aatcagggaa     11880
     actacaaaga attagtgaaa ttcttccgtg ttatcttcct ttacaatatc ctcttttgtt     11940
     cccttatggt gaagatggat tcagaacagg cattgagaaa catcaaacag ggtctggtaa     12000
     aaaaacgaag aacaagtgca tatctataag gcaatggttt gccttcagaa ttcacgaaag     12060
     aaaacatgag aagcatattt tacttaggtc gagaaggcta tggcagcaat tcttggtgga     12120
     ttcttataca gcaatagaat ctaaccggct tggttacatc aaacttaacc agagtagttt     12180
     gagggcagat aattacaatt ctgtgcaaaa ggcttcagag gaaggaaaga gtgatttgaa     12240
     agatcaagga ttagcatgtt atttgccagc tacttttaca ggtggtccta gatatatgag     12300
     gaacatgtat ttggatgcga tggcattgtg taaacatttt gggtttccag attattttat     12360
     cacattcact tgcaatccaa agtggccaga gctgattagg ttttgtggtg agcgaaactt     12420
     gagagctgat gatagacctg agattatatg caagatcttc aaaatgaaac ttgattctct     12480
     gatgcttgat ttaactaaaa gaaacatact agggaagaca agtacatgta agcagatttt     12540
     aatttgtttc atttactctg aaatattatg tctattatta tttttgataa ctataataat     12600
     tattatgttt tctgtgtaat tgcagctatg tatactatag agtttcaaaa aagaggactc     12660
     cctcatgctc atatactaat ttggctggat tcaaagtgta agttgaccaa agcagagcac     12720
     attgataaag ttatatcagc agagattcct gacaaattga aagaccctga gctatttgaa     12780
     gtgataaagg aaatggatgg ttcatggtcc ttgtggtgtg gtgaacccga aatgtccatg     12840
     tatggaaaac ggaaagtgtt caaagtttta tccgaaagat catgttcaaa aaacaattat     12900
     tgataaagaa ggatttccaa tatacagaag gcgaagaaca gatgactttg ttcagaagaa     12960
     agactttaaa tgcgataacc gttatgtcat tccttataat agatccctat cactgagata     13020
     cagagctcac atcaacgtgg agtggtgtaa ccaatcaggt tctgtgaaat acatattcaa     13080
     gtatattcat aaaggaccag atcgtgttac tgttgttgtt gaatcgtctc taaattcgaa     13140
     aaataaagaa aaaggtaaac agaaggtcaa tgctgataca gatggatcag agccaaagaa     13200
     gaagaatgaa gtcgaagact atttcaattg caggtatgtt taattaaaat tttaatagta     13260
     ttattcctgt taaatacatt tatttatgtt ccttatgatt gtataatttt gcatttcaga     13320
     tatgtttctg cttgcgaagc agcctggaga atattaaaat atcctataca ttatagatct     13380
     actgctgtga tgaagctttc gttccatttg ccaggggaac aatttattta tttcaaaggc     13440
     gatgaagaag tagaaacagt gttaaacaag gctgatctag atggctccat gttccttgct     13500
     tggttcgaat taaataaagt tagtaagatt gctaggaagc tgacttatgc agacatcccc     13560
     actagattta cctatgatcc aaaagaaaag aaatttaatc tcagaaagaa aggctttgct     13620
     ataggaagaa taaactatgt tcctcgtgat atagaagatg gatattattt gagaatactt     13680
     ctcaatgttg tgccaggtcc aagatgtttt gaagagctaa ggacagttaa tggtgtgcta     13740
     tataaagagt ggaaagatgc ttgtgaagca ttaggcttat tagataatga tcaggaatac     13800
     attgatgatt taaagagaac aagtttttgg agcagtggtt ggtatctacg tcagttattc     13860
     gtaattatgt tagatgctct aattagtcct gaaaatgtgt gggctgcaac gtggcaacat     13920
     ctctctgaag atattcaaaa cgataaaagg aaatatttca acagaccagg taacatctaa     13980
     tatcatttca aaacctcaat tttatctcat tttgttatac aatgcaatat tgataataaa     14040
     cttgctttgc taaattgtaa ctcatttagt tatctgtttg tttacagatc taattttgtc     14100
     tgatgaggag aaaaaattat atgctctaca agagatagat cacattttaa gaaggaatgg     14160
     tacttcactt acatattata agactatgcc acaagtacct agagatccta ggtttgatac     14220
     taatgtcttg attttggatg agaaagggta tgatcgtgat agtttgacaa aaaaacatgc     14280
     cgaatggatt aaaatgctta ctccagagca gaagtctatt tacgataaca ttattggtgc     14340
     agtgaatgaa aacgttgggg gagtattttt tgtttatgga tttggaggaa caggaaaaac     14400
     atttctttgg aaaacactct ctgctgcact taggtcaaag ggtgacattg ttcttaacgt     14460
     tgcttccagt ggtattgctt ctctcctttt agaaggaggt aggacagctc actctagatt     14520
     tggaattcct cttaatccta atgagtttac tacatgtaat atgaaagctg gttcagatag     14580
     ggcaaattta gtcaaagaag cttctctgat tatatgggat gaagctccaa tgatgagcag     14640
     acactgtttt gagtcattgg ataggagttt gtcagatatt tgtggtaatg gtgataacaa     14700
     accgtttggt ggcaaggttg ttgtctttgg aggtgacttc agacaagttc taccagtaat     14760
     ccccggtgct gatagggcag acatagttat gtctgccctt aattcatctt acctatggag     14820
     tcattgcaaa gtattgactc tgacaaagaa tatgcgtctt tattctgaag gtttgagtgt     14880
     tagtgaagcg aaagatatta aagagttttc agagtggata ttagcagtag gtgacggtag     14940
     aattggcgag cctaatgatg gggaggcttt gatcgatatt ccttctgaat ttcttattac     15000
     gaaagcaaaa gatccaatac aagccatatg cacagagata tatggagata ttacaaagat     15060
     acatgaacaa aaggatccag ttttttccaa gaaagagcaa tattatgtcc caccaacgaa     15120
     gatgtcaacc aaataaatga gaccatgctt gataacctcc aaggttatta ctaattcaga     15180
     agcattgatt tgaaacttta tttacttata ttaatagtgt ttctatttcc tatttcttct     15240
     ataactgtaa ctaaccaaaa ttttaatttt caggagagga gtttacattc ctaagttcag     15300
     acagtttaga cccagctgac attggtggta gaaataatcc ggcattgact cctgactttt     15360
     tgaatagtgt taaagtttca gggttaccta accataagct tcgtctaaag attggttgtc     15420
     ctgtgatgtt gctcagaaat attgatccta taggtggtct aatgaatggc acaaggttac     15480
     ggatcacgca aatgggtcca ttcattttgc aagcaatgat tctaaccggt gacagagctg     15540
     gtcatttagt attgattcca agattgaagc taacaccatc agacacaaag ttgccattta     15600
     gaatgcgaag aacacaacta cctttagctg tttgctttgc aatgactatc aacaaaagcc     15660
     aaggacaatc tttgaaaaga gtaggtattt ttctacctag gccttgcttt tcacacagcc     15720
     aactttatgt tgccatatcc agagttacat caaagtcagg attaaagatt ctgattgtgg     15780
     atgatgaagg taagccacaa aagcaaacaa aaaatgtagt tttcaaagaa gtttttaaga     15840
     atctttagtt tccatttgtt ttttacttct gttggattct tatcatgtca gtcttatatc     15900
     tacaatattc gttgaacatt tgctacttca atctaagaat ttacactatc aaatacagat     15960
     tctaaccggt gttacttaaa ttatctatat atcaaccata tcacacaaat gcagactttc     16020
     tacttgctta aagattaaga accatgtacc ttttcaggat tgttgttgtc tgagaggttt     16080
     gtgaagaatt ttatcgattc tatgactgcc accatgaaac atccattgtc atgtcctcta     16140
     aacttcagaa catccgtact gcagttaaag aacaattcgc tgcatttgta ttttggcaaa     16200
     ttgcataaat ctatcaagta aaacagaaca atcaagattc acaattccat tcaaatttgt     16260
     ttaccttctc aatatcacat ttaacataac gaaatgtgat cagcggaaga tgaatcagaa     16320
     ttcggacaac gccaatagac taaactccaa tcaccagatt ctgaatttga aagaccatta     16380
     cacttcgcct tctccattga tcaaaatttc aatcgaattc gataagatct gatgaaattg     16440
     tgtgattaat ggaagaaaga aaatgatcag atttgttgat atccgaaaaa cccagtaaat     16500
     cgattcgaat tctgcaatcg aattgaagga agctcaatgt caaaaaaatg aacttaagat     16560
     ccattcccgt gttttatcga atagcatgtt ttgttracaa ttataacact ctttttttct     16620
     attggttagt caaagtgtca taaaaatagg ttgtttgttg tttttgttat ctttaattaa     16680
     gtatagatga ttttgaaact tttacagaat aaaaggttta tgaataattt agaaatcaca     16740
     tattgttttt attttgtttt gtgattttgt tttcaactta taaaattctt aattaaaata     16800
     tataatacac atgaaaaaat aaattcactt tcattcttat aattattcat aataaaattt     16860
     accttatctt cattactaat aaaataacaa aatgtaataa acaaaatttc tctaacactt     16920
     gacaaacata gattataata tataatacta tactaaattc atatataaaa ttccttccaa     16980
     taaataaatg catatcaaaa caaatatact ccaatactat aattaataaa tctaatattt     17040
     caaccatttg ctacaatata attttctata caaaatgatg agtgtcaaca catatattat     17100
     tataataaat attacaaaac cataagataa aaaaacaaaa aactaaataa ataccataat     17160
     acaattaaaa cgtcatagta caatagtttc caaaacttcc cgcaacatgt atttatatat     17220
     caaaatttaa cacccgggcg aagcacgggt tatcaatcta g                         17261
//
ID   ATLANTYS2_I repbase; DNA   ; ATH   ; 9311 BP.
XX
AC   .
XX
DT   26-FEB-2001 (Rel. 6.1, Created)
DT   26-FEB-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   ATLANTYS2_I is an internal portion of the ATLANTYS2 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   gag; Gypsy-like endogenous retrovirus; ATLANTYS superfamily; RT;
KW   RNase H; integrase; ATLANTYS2_LTR; ATLANTYS2_I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-9311
RA   Kapitonov V.V., Jurka J.;
RT   "ATLANTYS2_I.";
RL   Direct Submission to Repbase Update (00-FEB-2001).
XX
CC   [1] (Consensus)
XX
CC   ATLANTYS2_I is an internal portion of the ATLANTYS2 endogenous
CC   retrovirus. There are several copies of ATLANTYS2_I in the genome;
CC   they are ~97% identical to the consensus sequence. Long terminal
CC   repeats from ATLANTYS2 are deposited in Repbase Update as
CC   ATLANTYS2_LTR. ATLANTYS2 has generated 5-bp target site duplications.
CC   ATLANTYS2_I encodes a 1867-aa polyprotein, ATLANTYS2p1, composed
CC   of gag, protease, reverse transcriptase, RNase H and integrase
CC   domains.
CC   ATLANTYS2p1 (CDS 73-2388 and 2476-5763, predicted by FGENESH):
CC   MVNNQIPGNTVDAEGNPIPPIQTDVPEAAAPATLAELRSMMAQLQQKVNDQEQANRSLAQ
CC   QLEAATSQGQIRTTRFGARHLQDRRAAADLNPTRLVFHTPGNTTRPVRRTAPEIGRDRTE
CC   PAILGNRETNRTERNEPQLPPPRAEVAEADQIGVSDDEDSEENIRWAEEYAREQEISAIK
CC   LSLAKAENEMKLVRSQMHNAVSSAPNIDRILEESHNTPFTHRISNAIISDPGKLRIEYFN
CC   GSSDPKGHLKSFIISVARAKFRPEERDAGLCHLFVEHLKGPALDWFSRLEGNSVDSFQEL
CC   STLFLKQYSVLIDPGTSDADLWSLSQQPNEPLRDFLAKFRSTLAKVEGINDVAALSALKK
CC   ALWYKSEFRKELNLSKPLTIRDALHRASDYVSHEEEMELLAKRHEPSKQTPRIDKSQPSA
CC   PNHKKGAQGGTFVHHEGRNFSGAHNYQADTPRGEAARGRGRGRGRGRGRESYTWTKDQPA
CC   GNEQEYCELHKSYGHHTSRCRSLGAKLAAKFLAGEIGGGLTIEDLEAEKGKTEQVNAVAN
CC   PEQAAPAANPEGPKRGRGNREADDDEPEAARGRIFTILGDSAFCQDTAASIKAYQRKADA
CC   NRNWARPFNGPNDEVTFHESDTNGLDRPHNDPLVITLTIGDFNVERVLVDTGSTLDIIFL
CC   TTLREMKIDMTQIVPTPRPVLGFSGETTMTLGTIKLPVRAKGVTKIVDFSVTDQPTVYNA
CC   IIGTPWLNQFRAVASTYHLCLKFPTSDGVKTIWGNQKNARICFMAAHKLRNPLKIEEARE
CC   STTPTPDPVILICLDDEKPERCVEIGGDLGEELTAELTAFLKENVNTFAWSPEDLPGVSV
CC   DIVSHELNIDPTFKPIKQKRRKLGRERAEAVKAEVEKLLRIGSITEAKYPDWIANPVVVK
CC   KKNGKWRVCVDFTDLNKACPKDSFPLPHIDRLVESTSGNKLLSFMDAFAGYNQIMMNPED
CC   QEKTAFYTEQGIFCYRVMPFGLKNAGATYQRFVNKIFALQIGKTMEVYIDDMLVKSMAEK
CC   DHISHLRECFKQLNLYNVKLNPAKCRFGVRSGEFLGYLVTHRGIEANPKQIEALLGMASP
CC   QNKREVQRLTGRVAALNRFISRSTDKCLAFYDVLRGNKKFEWTTRCEEAFQELKKYLATP
CC   PILAKPVIGEPLYLYVAVSDTAVSGVLVREDRGEQKPIFYVSQTFTGAESRYPQMEKLAL
CC   AVVMSARKLRPYFQSHSIIVMGSMPLRAILHSPSQSGRLAKWAIELSEYDIEYRNKTCAK
CC   SQVLADFIVELPTKEARENPLDTTWLLHVDGSSSKQGSGVGIRLTSPTGEVLEQSFRLNF
CC   EATNNVAEYEALVAGLNLARGLKIGKIRAFCDSQLVANQFNGEYTARDEKMEAYLIHVQN
CC   LAKNFDEFELTRIPRGENTSADALAALASTSDPSLRRVIPVEFIEKPSIELGEEEHVLPI
CC   QISADQDDPDDCSSEWMEPIISYISEGKLPSDKWKARKLKAQAARFVLVDEKLYKWRLSG
CC   PLMTCVEGEAICKIMKEIHGGSCGNHSGGRALAIKIKRHGFFWPTMIKDCENFSKRCKKC
CC   QRHAPTIHQPAELLSSIASPYPFMRWSMDIIGPMHPSKQKKLVLVLTDYFSKWIEAESYA
CC   SIKDAQVENFVWKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGN
CC   GQAEAANKTILDGLKKRLDAKKGSWSDELEGVLWSHRTTPRRATGETPFALVYGTECIIP
CC   AEMIVPSLRRSLSPENTPDNTQRLLDELDLIDERRDSALVRIQNYQNETARHYNSNVRQR
CC   RFHEGDRVLRKVFQNTAEPNAGKLGTNWEGPYLISKVIRPGVYELADLSGKAVPRSWNAM
CC   HLRKYYN
CC   ATLANTYS2_I encodes also a second protein, ATLANTYS2p2, located
CC   in opposite orientation at a place occupied usually by the
CC   env proteins in regular retroviruses.
CC   ATLANTYS2p2 (781 aa, CDS 8837-7874, 7797-7130, 7061-6348):
CC   MSSSQSPSTPSASLVDSSDSNHPDDLPPIYKRRSVWTSSEEDAVSSSNAPEQTTPFTARE
CC   DTNADIARELDLPDDPEPPLVRRSFAPMADEAGTSNWQDVPEPFMPTVKIEDFLYFGPNE
CC   TEDILRLNEQKAFEKAEKKKRKKNKKVIMPDPPGSTLCTERSLSDLRARFGLGAVTLRVP
CC   SPDERADNPPAGFYTLYEGFFYGCFLWLPIPRLVLEYVTSYQIALSQITMRSLRHLLGIL
CC   IRSYESETEITLAHLRNFLEIRRVPKSEVDRYYISPAKGKKIIDGFPSKDEPYTDHFFFV
CC   AIEDAVHEDLLGTVLTRWGILERTLKFLEPIPDDFLSAFHALSARKCDWLKHFSRERVER
CC   ALRLLHGVSCPTSSESSDHRTQFFVDMQSTKLTLREVYAKKKEDKERRLAEEKRLVDAGL
CC   ISPRAAPEATQDGNVIPDAAAPVDAAPAEAQEAEPSAAAPEAVVALPASDKAAGKRVRVD
CC   DESSKKKKKKKKTSGSEAEKVLPIFEDRIASANLLGGCVGPLLPPPDTLLESRKYAETAS
CC   HFLRAVASMNRMVHSYDSAMRSNMEVAGKLAEAESRIQAAEREKNEALSEAAAAKLEREE
CC   VERMAFVNKENAIKMAEQNLKANSEIVRLKRMLSEARGLRDSEVARAIQTTRREVSETFI
CC   AKIKTAEHKVSLLDEVNDRFMYLSQARANAQLIEALEGGGVLEREKEQVDEWLKDFADAE
CC   VNLNRFIAELKDELKAPAPEPAPLSPGGHRSVESLADEAGVTDQSGSLLPAEDNRPSEDL
CC   D
CC   There is 48% identity between ATLANTYS2p1 and ATLANTYS1p1.
CC   ATLANTYS2p2 and ATLANTYS2p1 are only 19% identical to each
CC   other.
XX
SQ   Sequence 9311 BP; 2721 A; 2474 C; 2203 G; 1909 T; 4 others;
     atttggcgct agaaggaggg gacttgagat ttctcttact cccggaacac agaaccaacc        60
     acccaattca caatggtcaa caatcaaatc cccggtaaca cagttgatgc agaggggaac       120
     ccaatccctc caatccagac agacgttcct gaagccgctg ctcccgcgac cctagcggaa       180
     ctaagaagta tgatggctca acttcagcag aaggtgaacg atcaagaaca ggcaaatcga       240
     tccttggcgc aacaactcga agcagctacc tcccaaggac agatcaggac tactcgtttc       300
     ggcgcgaggc atcttcagga tcgacgagca gcagcagatc tcaaccccac acggctcgtg       360
     ttccacacgc ctggcaatac tacaaggccc gtccgccgaa ccgcaccgga aatcggaaga       420
     gaccgaaccg agccagcgat tttgggaaat cgggaaacga atcgaacaga aagaaacgaa       480
     ccgcagctcc ctcctccccg agcagaagtt gccgaggccg atcagatcgg ggtctcggac       540
     gatgaagatt cagaagagaa cattaggtgg gctgaagaat acgccagaga acaggaaata       600
     agcgccatca agctctccct agccaaggca gaaaacgaga tgaagctcgt gagatcccaa       660
     atgcataacg cagtctcctc ggccccgaac atcgaccgca ttctggaaga gtcccacaac       720
     acaccgttca cacacaggat ctccaacgcg ataatctcag atccaggaaa actaagaatc       780
     gagtacttca acggatcttc cgacccgaaa ggacacttga agtcattcat catctccgtg       840
     gcccgagcca aattcagacc agaagaaaga gacgccggtc tctgtcacct gttcgtcgag       900
     cacttgaaag ggccagctct ggattggttc tcgagactcg aaggaaattc tgtggacagt       960
     tttcaggagc tatcgacact cttcctgaag caatattcgg tgctaatcga tcccggcaca      1020
     tcagacgccg acctgtggtc actatctcag cagcctaatg agccacttcg agacttcctc      1080
     gcaaaattcc gatctaccct agccaaagtc gaaggaatca acgacgtagc ggctctctct      1140
     gctctgaaga aagcactgtg gtacaaatcc gaatttcgaa aggaattaaa tttgtccaaa      1200
     ccactgacaa tccgagacgc cttgcaccga gcctcggatt acgtatccca tgaagaagaa      1260
     atggaactac tagccaaaag acacgaaccg tccaagcaaa cgcctcgcat cgataaatcc      1320
     caacccagtg ctccgaatca caaaaagggt gctcaaggcg ggacattcgt tcaccatgaa      1380
     ggacgaaatt tctccggagc ccataattac caggctgata caccccgagg cgaagccgcc      1440
     cgaggccgag gacgaggccg cggtcgagga cgcggtcgag aatcctacac ttggacaaag      1500
     gatcaacccg caggaaacga gcaggaatat tgcgagttgc ataagagtta cggccatcat      1560
     acttccagat gtcgtagcct cggagcaaag ttggcagcaa aattcctagc cggagaaatc      1620
     ggtggaggtt tgaccatcga agacttagaa gcggaaaaag gtaaaaccga gcaggtcaac      1680
     gctgtggcca atcccgagca ggcagccccc gcggcgaacc ccgaaggacc caaaagaggc      1740
     cgaggtaatc gcgaagcaga cgacgatgag ccagaagctg ctcggggaag gatcttcaca      1800
     attttagggg attcggcttt ctgtcaagac acggcggcat caatcaaggc ttatcaaagg      1860
     aaggccgacg cgaatcgtaa ctgggcgcgg ccatttaatg ggccaaatga cgaagtaacc      1920
     tttcacgaaa gcgataccaa cggtttagac cgtccgcaca acgatccttt agtcattaca      1980
     ctgaccatcg gtgatttcaa cgtcgaacga gtcctagtcg acacgggaag cacactggac      2040
     atcatttttc ttacaactct gcgagaaatg aagatcgaca tgacgcaaat cgtaccaact      2100
     ccacgacctg tgctcggatt ctctggggaa accactatga ctctcgggac catcaaatta      2160
     ccagtccgag ccaaaggggt aacaaaaatc gtcgatttct ctgttaccga ccagccgacc      2220
     gtgtacaacg cgattatcgg cacaccatgg ttaaatcaat tccgagctgt cgcctcgacg      2280
     tatcatctct gcctgaaatt tcccacaagc gacggcgtga aaaccatctg gggaaatcag      2340
     aaaaatgctc gcatctgctt catggcagca cacaagctca ggaaccccgt cactgaatcg      2400
     acggccgacg cgaatcataa gaaggccaag cttggccgag ctgaagagaa atcaatttcc      2460
     gagcagttat agcagctaaa gatcgaggag gctcgggaat ctacaacacc aactcccgat      2520
     ccggtaatct taatctgcct tgacgacgaa aagcccgagc gatgcgtaga aatcggcgga      2580
     gatctgggag aagaactaac agctgaactc accgccttcc tcaaagaaaa cgtcaataca      2640
     ttcgcctggt ccccagaaga tttgcccgga gtaagtgttg acatcgtatc gcacgagctc      2700
     aacatcgacc cgactttcaa acccatcaag cagaagagga gaaaattggg tcgggagcga      2760
     gcagaagccg tgaaagccga ggtagagaaa ttattgagga tcggatccat caccgaggcg      2820
     aaatatcccg attggatcgc gaacccggtc gtagtaaaaa agaaaaacgg caaatggaga      2880
     gtctgcgtag atttcacaga ccttaacaaa gcctgcccga aagacagctt cccattacca      2940
     cacatcgatc gcctcgtaga atcaacttct ggaaacaagc tactgtcatt catggacgct      3000
     ttcgctggtt acaaccagat catgatgaac cccgaagatc aagaaaaaac cgctttctac      3060
     acagaacaag gcatcttttg ttaccgagtg atgcccttcg gactcaagaa cgccggggca      3120
     acctatcaac gcttcgtcaa caaaatcttc gcattacaga tcgggaagac aatggaagtt      3180
     tacatcgacg acatgttggt gaaatccatg gcagagaaag atcacatatc ccatttacgc      3240
     gaatgtttca agcagcttaa cctctacaac gtcaaactca atcctgcaaa gtgccgcttc      3300
     ggagtaagat ccggcgagtt cctcgggtac ctagtcacgc accgcggcat cgaggcaaat      3360
     ccgaagcaaa tcgaggcatt gttgggaatg gcgtcacctc agaacaagcg agaagtgcag      3420
     cgcctaaccg gaagagttgc ggcccttaac cgtttcatct ctcgctcaac cgacaaatgc      3480
     ttggcctttt acgatgtgct tcggggaaac aaaaagttcg aatggacgac ccgatgcgaa      3540
     gaagcttttc aggaactcaa gaagtacctg gcaactccac ccatcctcgc aaaacccgta      3600
     atcggagaac cactatactt gtatgttgcc gtatcggata ctgcagtcag cggagtgtta      3660
     gtccgagaag acagaggcga gcagaaaccg attttttacg tctcgcagac tttcaccggc      3720
     gcggaatctc gctatccgca aatggaaaaa cttgctttag cagtcgtaat gtcggctcgg      3780
     aagctgcgac cctactttca atcccattcc atcatagtaa tgggatccat gccactccgc      3840
     gccatcttac acagtccaag ccaatcagga cgtctggcta aatgggcaat cgagctcagc      3900
     gaatacgaca tcgagtatcg gaacaaaaca tgtgcaaaat cgcaggtcct agccgatttt      3960
     atcgtcgaac tgcccaccaa ggaggcccgg gaaaacccac tcgacacaac ttggcttcta      4020
     cacgtagacg gctcgtcatc aaagcaaggc tcgggtgtag gcatccgcct cacctcgcca      4080
     acaggagagg tcctcgagca gtcattcaga ttaaacttcg aagctaccaa caatgtggcc      4140
     gagtacgaag cgctcgttgc cggacttaat ctagctcggg gactaaagat aggaaaaatc      4200
     cgagcttttt gcgattctca gctcgtcgcg aatcaattca acggagaata cacagctcgg      4260
     gacgaaaaga tggaagccta cctgattcat gttcaaaatc tagcgaagaa tttcgacgaa      4320
     ttcgagttga caaggattcc acgaggagaa aatacatcgg ctgacgccct agctgctcta      4380
     gcctcgacat ctgacccgag cctgagaaga gtcatcccag tggaattcat tgagaagcca      4440
     agtattgagc tcggcgaaga agaacacgtc ctcccaatac aaatcagcgc ggatcaagac      4500
     gacccagatg actgcagctc agaatggatg gaacccatca taagctatat atccgaaggg      4560
     aaattgccct cggacaaatg gaaagctcgg aaactcaaag ctcaggctgc acgtttcgtt      4620
     ctagtagatg aaaaacttta caagtggcga ttatccggac ccttgatgac atgcgtggaa      4680
     ggagaagcga tttgcaagat catgaaggaa attcacggtg gctcgtgcgg aaatcattcc      4740
     gggggaaggg ctttagccat taaaataaaa cgccacggat tcttctggcc gacaatgatc      4800
     aaagactgcg aaaatttttc aaaacgatgc aaaaaatgtc aaaggcacgc gccaacaatc      4860
     catcagccag ccgagctctt gtcatcaatc gcctcgccat atccattcat gcgatggtca      4920
     atggatataa ttggacctat gcatccctcg aagcaaaaaa agttagtcct cgtcctgacc      4980
     gactatttct ctaagtggat agaagccgaa tcttacgcca gcataaagga cgctcaagtc      5040
     gagaacttcg tgtggaaaca tatcctatgt cgccacggga taccttatga gattgtcacg      5100
     gataacggct cgcagtttat atcaacccgc ttccaaggct tctgtgataa atggggaatt      5160
     cgacttagca agtcaacacc acgatatccc caaggaaacg gccaagccga agccgctaac      5220
     aaaacaatcc tcgacggatt gaagaaacgg ctcgatgcta aaaagggctc gtggtccgac      5280
     gaactcgaag gtgtactttg gtcgcatcgg acaactcctc gccgagccac aggagaaacc      5340
     cctttcgcct tagtctacgg aacggaatgc ataattccag ccgagatgat agtgccgagc      5400
     ctacgacgga gtctatcccc cgagaacacc cctgataaca ctcaaaggct cctcgacgaa      5460
     ctcgatctga tcgatgaacg aagagattca gccctggttc gcatacaaaa ttatcagaat      5520
     gaaacggctc gtcattacaa ctcaaatgtt cggcaacgaa gattccacga aggagatcgg      5580
     gtcctccgaa aagttttcca gaacactgcc gaaccgaacg ctggaaagct cgggacgaac      5640
     tgggaaggac catacttaat ttctaaagtc atccgacccg gagtgtatga gctcgctgac      5700
     ttaagcggca aagccgttcc aagatcatgg aacgcaatgc acctaaggaa atactacaac      5760
     taaatccgag gtgactaaac ttgaactacg aggtggcttg atccctgaaa agggtacgta      5820
     ggcagctcgt cttcggacga gttcagctac ccccccatta aaaaaggggg gagtgggtcc      5880
     gtatattcat actcccattt ttattatctt gtagattttc gaaccgaaac atgaataaaa      5940
     attctttgca actttttatt cggctaatac gatgagcgac ggctcggagt atccattacg      6000
     cctattcggc tacagcgcgc tatacaaata cgaggtgaaa tctatcagat tatttctgat      6060
     aagaaatttt catcttcaga aacccggtta tacttttaac accggtatcc cagctcgttc      6120
     ctaaacgctg gtcgggaagt gaatacgatc gggtcgcaac cgaatcatat tagamaataa      6180
     aacggttcgg atttttagaa tcccaccaaa wattttggat ttcaaaaaak attggataaa      6240
     gccatccagg cacaggttct acaaatcatt ggataaagcc atccaggcat aagtactata      6300
     accaaacaaa aagaaaaaaa aaaaaaaaca aatcccgcct cgggtcccta gtcgagatct      6360
     tcagatgggc gattatcctc ggcaggaagg agagatccgg attgatcagt aactcccgcc      6420
     tcgtcggcaa gagactcgac cgatctgtga ccacccggac tcagaggagc gggctcggga      6480
     gctggagcct tgagttcatc tttcagctcg gcgatgaagc gattaagatt aacctcagca      6540
     tcggcgaaat ctttcaacca ctcatcgacc tgctccttct ctctctccag aactccgcca      6600
     ccttcgagcg cctcgatcag ctgcgcattg gctcgcgcct gagacaagta catgaatcgg      6660
     tcattgacct catcaaggag cgacactttg tgctcggcgg tctttatttt ggcaatgaag      6720
     gtctcggaaa cctcccgcct cgtcgtctga atggcccgag ccacctcgct atcacgaagc      6780
     cctctcgcct cggataacat ccgcttgaga cggacgatct cagaattcgc cttgagattc      6840
     tgctcggcca tcttaatggc attctctttg ttcacaaagg ccatcctctc gacctcctcc      6900
     ctttccagtt tcgctgcggc agcttcggag agtgcctcat ttttctctcg ctcggcggcc      6960
     tgaatccgag actccgcctc ggctaactta ccagccacct ccatgttgct ccgcatagcc      7020
     gaatcatacg aatgtaccat ccggttcatc gaagcgacag cctggaaaag agaaaagtta      7080
     gatttacaat gacaacacca agacaagtta taagtaacaa agcacatacc cgcagaaagt      7140
     gagatgccgt ctcggcatac ttccgagatt ccagaagagt atctggagga ggaagcaagg      7200
     gaccaacgca tcccccgagc agattggccg aggcaatacg atcttcaaag atcgggagta      7260
     ctttctccgc ctcggagccg gatgtcttct ttttcttctt cttcttcttt gacgattcat      7320
     cgtcaacccg aacgcgctta cccgccgctt tgtcactcgc aggtaacgcc acaaccgcct      7380
     cgggcgcagc agcagacggc tcggcttcct gagcttcagc gggcgccgcg tcaaccggsg      7440
     cggcagcatc gggaataaca ttcccatctt gggtcgcctc aggagcggcc cgcggcgaga      7500
     tcaatcccgc atcaacaagg cgtttctcct ccgccaatcg cctctcctta tcctctttct      7560
     tcttggcgta gacctcccgc aaagtaagct tcgtcgattg catatctacg aaaaattgag      7620
     tacggtggtc ggaagattcc gaactagtag gacaagaaac gccgtgaaga agacgaagcg      7680
     cacgttcaac tcgctcccga gagaaatgct tcagccaatc gcacttccga gccgacaacg      7740
     cgtgaaaagc cgaaagaaaa tcgtctggaa tcggctcgag aaacttgaga gtgcgttctg      7800
     caaaaggaaa actgcaatta gaaaacgaaa ctaacatcgc atcgggtaca aataaatttc      7860
     taactacaac tacccaaaat tccccatctc gtcagaaccg tcccgaggag atcttcatga      7920
     acagcatctt cgatggctac gaagaagaag tgatcggtat acggctcgtc cttgctcggg      7980
     aacccatcaa taattttctt tcccttagcg ggggaaatgt aataccgatc cacttcggat      8040
     tttggcaccc gccggatctc gagaaaattt ctcagatgag caagcgttat ctccgtttca      8100
     gactcgtaac tccgaatcaa aatcccgagc aaatgtctca aagatcgcat cgtgatctgg      8160
     gaaagggcaa tctgatatga tgtcacatac tccaggacca gcctcgggat cggcagccac      8220
     aagaagcaac cataaaagaa cccctcatac aaggtataga aacccgcagg gggattgtcg      8280
     gctcgctcgt cagggctcgg cacacgcaag gttacagcgc caagaccaaa tcgagcccta      8340
     aggtccgaga gagaccgctc ggtgcacaat gttgagccgg gaggatctgg cattatcacc      8400
     tttttgttct tcttcctctt cttcttctca gccttttcga aagccttctg ctcgttaaga      8460
     cgcaagatat cttctgtctc gttcgggccg aagtaaagaa aatcctcgat cttaaccgtc      8520
     ggcatgaagg gctcgggcac atcttgccaa ttggatgtcc cggcttcgtc agccatcggg      8580
     gcaaaagacc tccgaacgag aggcggctcg ggatcatcgg gcaaatccaa ttcccgagcg      8640
     atatcggcat tggtatcttc ccgagccgtg aagggagtcg tctgctcggg ggcattcgaa      8700
     gaagatacag catcctcttc agaagacgtc caaactgatc tccgtttgta gatcggggga      8760
     agatcatctg ggtgatttga gtcgctagaa tcgacaagag aagcgctcgg ggtcgacgga      8820
     gactgtgaag aactcattct cggctcggga cgatagacga gaagggaaac aaccagaaaa      8880
     caagaatttc tatcccggaa aaatcaaaaa taacaaaaag aacgacggag cttcaccgga      8940
     aaagaaaaaa cgatagaaat atcaagatca gagagaagga agcaaacctt gtttattttc      9000
     ttcgaaaact tcaaatgaag tcttgaagga gtggctcgcc gtatatatag agttttcaaa      9060
     ggcgcgtcgg gtccgcagca aacattcaaa acgcgttcaa gcgcgtgggc tcggcagaag      9120
     gaaaagatcc gcgtgatcct cgggaataag cgagaaacgt ttccactcct caagaatagt      9180
     cggcgacacg cgacagaagt ttgaccgtcc gagaagatga agcgacagaa ctagaagacg      9240
     aacagtcggc tcgggaatcc attcatgaag ctcatcgtct ctctgccaag tcaatgagct      9300
     ggggggcaaa c                                                           9311
//
ID   ATLANTYS1_I repbase; DNA   ; ATH   ; 10633 BP.
XX
AC   .
XX
DT   27-SEP-2000 (Rel. 5.08, Created)
DT   08-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   ATLANTYS1_I is an internal portion of the ATLANTYS1 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; gag;
KW   Gypsy-like endogenous retrovirus; ATLANTYS superfamily; RT; RNase H;
KW   integrase; ATLANTYS1_LTR; ATLANTYS1_I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-10633
RA   Kapitonov V.V., Jurka J.;
RT   "ATLANTYS1_I.";
RL   Direct Submission to Repbase Update (00-SEP-2000).
XX
CC   [1] (Consensus)
XX
CC   ATLANTYS1_I is an internal portion of the ATLANTYS1 endogenous
CC   retrovirus. There are about 10 copies of ATLANTYS1_I in the genome;
CC   they are ~97% identical to the consensus sequence. Long terminal
CC   repeats from ATLANTYS1 are deposited in Repbase Update as
CC   ATLANTYS1_LTR. ATLANTYS1 has generated 5-bp target site duplications.
CC   ATLANTYS1_I encodes a 2030aa polyprotein, ATLANTYS1p1, composed
CC   of gag, reverse transcriptase, RNase H and integrase domains:
CC   ATLANTYS1p1 (exons 75-5635 and 5676, predicted by GENSCAN):
CC   MDPNSSNSSGSGLPVQIPNDDVTDGHLPTDLPLGTKVDAVHNADAEDISQNSNSSGSDQI
CC   TPPPQTRGGERNVTIQPPNGDNPANPSNQVPPRPASELAELRAMIMNLINLTKNQEIAHR
CC   NLAAIVGQQRRDSTRMAHEVERDTAGKEVPPRETGIPAQVPIDLTGTVSPADPTPRTRLD
CC   FASIDVSPPINRQVTFLQAPANALVENLATGNETSTTPAFPRLPVPPLLPLGYSPPRYTW
CC   TRNQTTASSSRIPGNSTQQRTSIANPPSIPRIPGSDLLNSPTDPQAPVDPRNVVDMETFR
CC   NYAAQTNANMAQMHSRMHLAVSDAPDIDRVIEETRRTPFTDRIARFRLRDVGRLRFPEYD
CC   GTSDPKAHLRSFRFAITRAYLTDEENEAGHCRFFAENLVGHALEWFASLEGNSIDTFDQL
CC   AAAFLKQYSVLIEHRTSEADLWSLTQLQNESLRSYVEKFKAIKSKIANLNEEVAIAALRN
CC   GLWFSSRFREELTVRQPVSLDDALHKALHFAKAEEELAVLALRFKESKTQNAPLAIKKPF
CC   KKENQTQGQHTLFAIEEAAEDESPELDLGKYCKYHKKRGHSTEECRAVKKLIAAGGKTKK
CC   GSNPKVETPPPDEQEEEQTPKQKKRERTPEGGDSPPPARRERIDLVFAELDLGGRTGRSV
CC   TTPPPAPHKKNMRFPLRLSKFCRSATEHLSPKRIDFIMGGSQLCNDSINSIKTHQRKADS
CC   YTKGKSPMMGPDHQITFWESETTDLDKPHDDALVIRIDVGNYELSRIMIDTGSSVDVLFY
CC   DAFKKMGHLDSELQGRKTPLTGFAGDTTFSLGTIQLPTIARGVRRLTSFLVVDKKAPFNA
CC   ILGRPWLHAMKAVPSTYHQCIKFPSDKGIAVVYGSQRSSRKCYMGSYELIKKADPVVLMI
CC   EDKLAEMKTVRSSDPSQRGPRKSLITQVCIDESDPKRCVGIGQDLDPAIREDLITFLKEN
CC   KDSFAWSSANLRGISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVHDEVDRLLKIGSI
CC   REVKYPDWLANPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGHELLSF
CC   MDAFSGYNQILMRPDDQEKTAFITDRGTYCYKVMPFGLKNAGATYQRLVNRMFADQLGKT
CC   MEVYIDDMLVKSAREKDHVPQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTERGI
CC   EANPKQIAAFIDMPSPKTAREVQRLTGRIAALNRFISRSTDKCVPFYQLLRKDKKFDWNE
CC   DCEQAFKQLKAYLSEPPILAKPEEGEPLYLYTAVSRTAISGVLVREDHEGQKPIYYVSKT
CC   LIDAETRYPAMEKLALAVVMSARKLRPYFQSHPIVVMTSQPIRTILHSPTQSGRLAKWAI
CC   ELSEYDIEYRTRTSLKAQVLADFVIELPLADLDGTNSNKKWLLHVDGSSNRQGSGVGIQL
CC   TSPTGEVIEQSFRLGFNASNNESEYEALIAGIKLAQGMGIRDIHAHSDSQLVTSQFHGEY
CC   EAKDERMEAYLELVKTLTQQFESFELTRIPRGENTSADALAALASTSDPFVKRIIPVEGI
CC   EHPSIDLTVKHAGMETSATCNFTRVTRSTTAAARALAAAAEAGAAEEEPELGTPEQPASY
CC   EPEPYNDWRIPIIDYIERGITPPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYG
CC   QQTKDLMKSMHEGQCGSHCSGRTLALRIKKQGYFWPTMLADCIAHSLRCDKCQRHAPTLH
CC   QPPEEMSSISSPYPFMKWSMDVVGPMEASGGKKRLKNLLVLTDYSTKWIEAKAFQQVTEK
CC   QVEDFLWENIVCRHGIPYEIVTDNGTNLTSGKIKAFCDKWKIRLTTSTPLLPTSNIKKRL
CC   DSKKSMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPVETIVPSVRRTASPANSD
CC   LNTQMLQDNMDFIDERRDQAMIRVQNYQQAAARYYNSNIKIRRFEVGELVLRKVFSNTRE
CC   LNAGKLGTNWEGPYRITEVVRDGVYKLVKVINGVPELRPWNAMHLKKYHE
CC   The second strand encodes 824-aa protein, ATLANTYS1p2, similar
CC   distantly to ORF3 in the the rice RIRE2 retrovirus. Its C-terminal
CC   portion (position 600-800) is related to a coiled coil
CC   domain present in the myosin heavy chain.
CC   ATLANTYS1p2 is enoded by 8 exons (10596-10576, 10483-10337,
CC   10096-9842, 9676-9385, 9271-9035, 8928-8204, 8130-7981, 7906-7259;
CC   predicted by GENSCAN).
CC   ATLANTYS1p2:
CC   MSGHIGQIPLTERFRGDTRDKSLLMWTAEMERLFSAPHLTVQIRRGEEISAISKIVMSDF
CC   EDSQNKSNHSYGDDSSSSETRSAASPPRVQRRVITLGGMGPIRPPSTRADKPKKKKAAKQ
CC   GGGTPMTNSDLVDLRRRCQVPMCPNFVRHVLALFTRAREVNREFSCHDLLQLCQVKTNAR
CC   SDQGTYYISARPGSLVLGGLKACRDTNWRSKYFFFRVDRHSIGSFDPARITRTWSTNLAR
CC   TKEVTLSETELELLTLLRRGQTDWATFSRDRIVAALAVAPAVPVAPAVPAIVLPAAQLDP
CC   IEEVPRIEPIPEADLPIVPPDSSSTSELPLIRRMRRPSLRVQRANAGAPARAGDLSAAVT
CC   AARNTLAVSSASASASHPSLPEINTGTSAAAGQSDNNQVAQVSGPSAVVRSDGAPSSPKR
CC   ARTQPEVHPAAELVVSDQGVASPREERMEPAAAIPEAAASADRRSSGRSHGGGRGSRGGG
CC   RSSNRSQEVRQTSNSGGGSAGSRPFHWSYTHDRDHPIVEDEAGLANLLRHIKGRNCQVPG
CC   VKNMAEAAAYADMMAKEGQAIAATNKLVALYEQRLSQVPSASELEEGKTLIRELTSSVKA
CC   GQDREVSFQAEIERLKMELSTSKDLEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQR
CC   REELSKKVMDLTSTAQGAKKAVHDAKVELAAAYSKLLAGIKEKWVAKKEYTVLEGQAAEV
CC   ESNLALIDQITKAAIDLTVEKPRLQAELDDLEARCKSKEVSDFTLSKLDLPQVSEISVVR
CC   PMDVDEQGTPIGLDEFGSNKDAFPGGLAEGSGTVFATPAGESRE
CC   ATLANTYS1 forms a distinctive superfamily of GYPSY-like retroviruses
CC   together with RIRE2 and RETROSOR1 found in the orysa sativa and
CC   the sorghum bicolor genomes. These retroviruses have ~10 kb internal
CC   sequences and their second strands encode a structural-like
CC   protein with a coiled coil domain.
XX
SQ   Sequence 10633 BP; 3062 A; 2988 C; 2411 G; 2172 T; 0 others;
     tttggcgccg tctgtgggga cggaaataga tcattccaac accgaaacta acacatcaat        60
     tgtgaccaac gatcatggat cccaattcat ccaattcatc gggatctggc ttaccagttc       120
     agatcccaaa cgatgacgtt acggacgggc acctcccaac ggatctccct ctcggaacca       180
     aggttgatgc tgtccataac gctgatgcgg aggacatctc ccaaaactcg aattcttctg       240
     gatctgacca aatcactccc cctccgcaaa caaggggcgg agaacgaaac gtcacgatac       300
     agcctccaaa cggagataac ccggccaacc cgtctaatca ggtccctccg cgacctgcca       360
     gcgaattggc cgagctccgc gcaatgatca tgaacttgat caacttaacc aaaaaccaag       420
     aaattgcgca tcgcaacctc gccgcaattg tgggtcagca gagacgcgac tccactcgca       480
     tggcacatga ggtagagcgc gataccgcgg gtaaggaagt tcccccccgc gaaactggga       540
     ttcctgccca ggtccccata gatctgacag gtaccgtctc cccggccgat cctactccga       600
     ggactcgtct ggacttcgcc tcgatagacg tctcacctcc tatcaaccgg caggtcacct       660
     ttttacaggc acctgcgaac gctctcgtcg aaaacctggc aacaggaaac gagacaagca       720
     caacgcctgc cttcccaagg ctaccggtcc cacctttact accgctgggc tattcgcctc       780
     ctaggtacac gtggacgaga aaccaaacaa ccgcgtccag ttcccgcatt cccgggaact       840
     caacgcaaca acggacctct atcgctaatc cgccatccat tccccggata ccaggaagcg       900
     acctccttaa cagtccaacc gatccccaag caccggtcga tccgcgtaac gtcgtagata       960
     tggaaacatt ccgcaattac gcagctcaaa caaatgcgaa catggctcaa atgcattcgc      1020
     gaatgcatct agcagtgagc gatgctcccg acatagatcg cgtgatcgaa gaaaccaggc      1080
     gcaccccgtt cacggatagg atcgctcgtt ttcgcctccg agacgtcggg agactccgtt      1140
     tcccggagta cgacggaacg agcgacccaa aggctcatct gagatccttc cgtttcgcta      1200
     taacacgagc gtacctgaca gacgaagaaa acgaagcagg tcattgccgt ttcttcgcag      1260
     aaaacctcgt aggtcacgcc ctcgaatggt ttgctagcct cgaagggaac tccattgata      1320
     ccttcgacca gctcgccgcc gctttcttaa aacagtattc ggtacttatc gaacacagga      1380
     cgtctgaagc cgacctctgg agtctcactc aacttcagaa cgaatccctg cgatcttacg      1440
     tcgaaaaatt caaagcaatc aaatcgaaaa ttgcaaacct aaacgaggag gtagccatag      1500
     cagcccttcg taacggtctg tggttctcct ctaggttccg tgaggaactc actgttaggc      1560
     aaccagtctc tttagacgat gcccttcaca aagctctcca cttcgccaaa gccgaagagg      1620
     agctcgctgt gctggcctta cgattcaaag aatctaaaac gcaaaacgct ccccttgcaa      1680
     ttaaaaaacc cttcaaaaag gaaaaccaaa cgcaagggca gcatacctta ttcgcaatag      1740
     aagaggcagc tgaggacgag agtccagaac ttgacctcgg aaaatattgc aagtaccaca      1800
     agaaaagagg acattccacc gaggagtgtc gcgccgttaa aaaattaatc gcagctgggg      1860
     gcaaaactaa aaaaggttca aaccccaaag ttgaaacccc tcctcccgac gaacaggagg      1920
     aggagcaaac tcccaaacaa aagaaacggg aacgaacacc ggagggaggt gactctcccc      1980
     cacccgctag gagagaacgc atagacctag tctttgcaga actcgatcta ggtggcagga      2040
     caggaaggtc agtcaccaca cctccccccg ccccgcataa gaaaaacatg aggtttccat      2100
     tacgcctctc gaaattctgc agaagcgcaa ccgagcacct ctccccgaaa cgcatcgatt      2160
     tcatcatggg agggtctcag ctctgcaacg actcaatcaa ttcgatcaaa actcatcaga      2220
     ggaaggcaga ttcctacaca aaaggcaaga gcccgatgat gggacctgac caccagatca      2280
     cattctggga aagcgaaacc accgacctcg ataaacctca cgatgacgct ctcgttattc      2340
     gaatcgatgt aggcaactac gaactctccc gtataatgat cgacacggga agctcagttg      2400
     acgtactctt ttacgacgcc ttcaaaaaaa tggggcacct cgattccgag ctgcaaggca      2460
     gaaaaacgcc acttaccggg ttcgctggag atacgacctt ttctctagga accatccagc      2520
     tcccaaccat cgcacgagga gtgaggcgac tcacgagttt cctcgtagtc gacaagaaag      2580
     ctcctttcaa cgcaatactg ggaagaccat ggctacacgc catgaaagcc gtcccatcaa      2640
     cctaccacca atgcattaaa ttcccctcgg acaagggaat agcagtcgta tacggcagcc      2700
     aacgcagctc ccgaaaatgc tatatgggca gctacgagct tatcaaaaaa gctgaccccg      2760
     tagtactaat gatagaagac aaactcgcgg aaatgaaaac agtcagatcc tctgatcctt      2820
     ctcaacgcgg acctcgaaaa tcattgataa cacaggtctg catagacgaa tcagatccca      2880
     aacgatgcgt tgggataggt caagacctcg acccagcgat acgagaggat ctcataacct      2940
     ttctcaaaga aaacaaagac agctttgcct ggtcaagtgc gaacctccga ggaataagcc      3000
     tcgaggtaac ctcacacgaa ctcaacgtcg atccgaccta ccgacctata aagcagaaac      3060
     gtcgcaagct aggtcccgaa agggctaaag ctgtgcacga tgaggtcgat cgattgctca      3120
     agatcggatc gataagagaa gtaaaatacc ctgactggct cgccaacccg gtcgtcgtta      3180
     aaaagaaaaa cgggaagtgg agagtatgca tcgactttac ggacctgaat aaggcatgtc      3240
     ctaaagacag tttcccactc ccacatattg accgactggt cgaagccact gcgggacacg      3300
     aactattgtc cttcatggat gcattctccg ggtacaacca aatacttatg cgcccagatg      3360
     accaagaaaa aacagctttt attactgacc gaggcaccta ctgttataaa gtaatgccct      3420
     ttggtttaaa aaacgctgga gctacttacc aaagattggt gaacagaatg ttcgccgacc      3480
     agctaggtaa aacgatggag gtctatatcg acgacatgct ggtcaagtca gctcgcgaaa      3540
     aagaccacgt cccgcaatta agagaatgct tcaaaatcct aaacaaattc gagatgaagc      3600
     taaaccccga gaaatgctct ttcggagttc cctcaggaga attcctcgga tacctagtaa      3660
     ccgaaagagg catcgaggcc aatcctaagc agattgcagc cttcatcgac atgccatcgc      3720
     caaaaacggc acgggaggtc caacgactaa ccggccgtat cgccgccctc aacaggttca      3780
     tatccaggtc taccgataaa tgcgtccctt tctatcagct cctccgaaag gataaaaagt      3840
     tcgattggaa tgaggactgc gagcaagcct tcaaacaatt gaaagcatac ctgtccgaac      3900
     cacccatact cgcaaaaccc gaagaaggag aaccgttgta cctgtacacg gcagtctccc      3960
     gaaccgcgat aagcggcgtc ctggtgagag aagatcacga aggacagaaa ccgatctatt      4020
     acgttagtaa aacgttgata gacgctgaaa cccgttatcc agcaatggaa aaactggcac      4080
     tggccgtagt catgtcagct cgaaaactga gaccatattt tcaatcacat cccatcgtag      4140
     tgatgacgtc tcaaccaatc agaaccattc tgcacagtcc aactcaatca ggtcgacttg      4200
     caaaatgggc catagaacta agtgagtacg atatagaata tcgcaccaga accagcttga      4260
     aagcacaggt cctagccgac tttgtaatcg agctcccgtt agcggacctg gatggaacca      4320
     actccaataa gaaatggctc ctccacgtcg atggctcctc caaccgacag ggatccggag      4380
     taggaataca actcacctcc cccaccgggg aagtcatcga acaatcgttc cgactcggat      4440
     tcaacgcatc aaacaacgag tctgagtacg aagccctcat tgctggcatt aagctagctc      4500
     aaggaatggg gatccgcgat atacacgccc atagcgactc ccaactcgtc accagccagt      4560
     tccacgggga atatgaagct aaagacgagc gcatggaagc gtacctcgaa ctagtcaaaa      4620
     ccttgaccca acagttcgaa tcgttcgaac tgaccaggat ccccagagga gaaaacacct      4680
     ctgcagacgc cttggcagct ctcgcctcca cgtcagatcc tttcgtcaaa agaattatcc      4740
     cggtcgaagg aatagaacac ccgagcatcg acctaacggt caaacacgct gggatggaaa      4800
     cctcggcaac ttgcaacttt acgcgagtaa cccgaagcac caccgccgcg gctagagccc      4860
     tcgcagcagc cgcggaggca ggtgcagcgg aggaagagcc ggagctcgga acccccgaac      4920
     aacctgcctc gtacgaacct gaaccgtaca acgactggag aatcccaatc atcgattaca      4980
     tcgaacgagg gatcacacct cccgacaagt gggagaccag aaaactcaaa gcccagagcg      5040
     caaggtactg catcatggaa gggagactta tgaaacgcag cgtcgcaggt ccctatatgg      5100
     tgtgtaccta cgggcaacaa acaaaagacc tcatgaaaag catgcacgag gggcaatgtg      5160
     gtagccactg tagtggacgt accctcgccc tcagaatcaa aaagcaaggc tacttctggc      5220
     caacaatgct agccgattgc atagctcatt cactcaggtg cgataaatgc caacgacatg      5280
     cacctactct tcatcaacct cccgaggaaa tgtcctcgat atcttctcct tacccattta      5340
     tgaagtggtc catggatgtc gtaggtccca tggaagcctc cggtgggaag aagagactaa      5400
     aaaacctgct ggtcctcacc gactactcta ccaaatggat tgaggctaaa gccttccaac      5460
     aggtaaccga gaaacaagtc gaggacttcc tatgggaaaa tatcgtatgc cgacatggca      5520
     taccttatga gatcgtcacc gataacggga ctaacctcac ctcgggaaaa atcaaagcat      5580
     tttgcgacaa gtggaagatc cgtcttacca catccacccc cctgttaccc acaaggtaac      5640
     ggacaggcag aagccgccaa caaagctata cttagcaaca tcaagaaaag acttgattcc      5700
     aaaaaatcaa tgtggtccga cgtgctccac ggagttctct gggcctaccg aactacacct      5760
     cgcaaatcaa cgcaagaaac accgttctct ctcgcctatg gtttagaagc agtaatccct      5820
     gtcgaaacca tagtaccaag cgtgagaagg accgccagtc ctgctaactc ggacctgaac      5880
     acgcaaatgt tacaggacaa catggacttc atcgatgaac gcagagatca ggcaatgatc      5940
     cgagttcaaa actatcaaca agctgccgcc cgctactata actccaatat caaaattcgg      6000
     agattcgaag tgggagagct cgttttacga aaagtgttca gcaacacgag agagctaaac      6060
     gctggaaaac tgggaactaa ctgggaaggt ccctatcgaa tcaccgaggt ggtacgtgac      6120
     ggcgtctata agctcgtaaa agttatcaac ggagtacctg agttacggcc ttggaatgcc      6180
     atgcatctca agaaatacca cgaataggta ctcaaaaaca atcgaactac gataaggctt      6240
     gatcccttgg cagggtacgt aggcagctcc ccccaagagc gcagccacca cttcaatcaa      6300
     atcacaaaag ggcttaatcc cctaaccagg tatgcaggca gttccctccg caaacgcaat      6360
     taccatctca acccttccat ttgaaagacg aaacttcaac aagggaaaca gacatcacat      6420
     cttccatcaa cgaagatcag ctgctcacct gacagttcaa tcacccttcg gtatcgagca      6480
     ggtccctgct cgatgatcaa acgccagatc gtcgcttgct ttacctcttt ttgtacttaa      6540
     caatttcgag ataagaataa aagaaaattt tgatactcat tatcatgttt cgcaaaaaca      6600
     atcatttaca ctatgattta aaactcattc gtaatcttac gatacccaaa gcccaacacc      6660
     cgaatgttgg cggatccatt ttgtgatctc gcttccaaaa agtcgatagt gaactaaact      6720
     tataagaaca catcacttcg gcttcatcgg agctcaccta ctacaaccat atctaactct      6780
     ttcgctatca acacataaca tagtaaacaa ggaagaaacg aaggtttcat tcgcgacctg      6840
     gcgataccac aagcccagct cccaaaatct ggcaggtccc ttgtgtgacc tcacttcaac      6900
     aggttcccga gacaaaacaa ctcaaactca ctcaaagttt taaccttcga agaacatacc      6960
     atatcacatc cgaaataact tggactcgaa acaagtccaa ttattatccg gaacgtggac      7020
     aaagcgaggt gatcatacac caaaatcaac gaagtgtcaa cactcgaacg aaagacaaaa      7080
     aatacttgct aaaaaggata aaagccttcc caggcatcca agtacttaaa cgaacaaagg      7140
     ataaaagcct tcccaggcac caagttcaaa aagcaataaa cgaaaggata aaagccttcc      7200
     caggcattaa gtctgaaaca aaacacaaaa tcctaaaaca aacaaggagc gaaagtgatc      7260
     actccctcga ttctccggct ggcgtagcga agacagtacc agaaccctcc gcgagacctc      7320
     ccggaaacgc gtctttgttg ctcccgaact catccaagcc aattggcgtc ccttgctcgt      7380
     cgacgtccat cggacgtacc accgaaatct ctgaaacctg cgggagatcc aacttgctta      7440
     gagtaaagtc tgatacctcc ttcgatttgc accgcgcctc taggtcatcc agctctgctt      7500
     gcagccgagg tttctccacg gtcagatcga tagcagcctt tgtgatctgg tcgatcaaag      7560
     ccaggttcga ctccacctcg gccgcttgcc cctccagcac cgtgtactcc tttttggcga      7620
     cccacttctc cttgatccca gctagcagct tcgaatacgc agcagccagc tcaaccttag      7680
     catcgtgaac cgccttcttc gccccttgtg cagtcgaagt caggtccatc acctttttgg      7740
     agagctcttc cctcctctgc tccaagcgat gaatctggtt cctcgccgtc tgcttgtcgg      7800
     cttgcaaccc cccgatctcc atctccatga acccgatctt ctcagcataa cctttctcga      7860
     ggtcttttga agtggacagc tccattttca gcctctcgat ctccgcctga aatcacaatc      7920
     aggtcagaat catcgaatca tcgacgaatt atatacaaac aagtcaaaac cgaggtgtac      7980
     ctggaacgag acttcgcgat cctgaccagc cttcacactc gacgtcagct cccggatgag      8040
     ggtctttcct tcttcgagct cactcgccga ggggacctgg ctcagacgct gctcatagag      8100
     agcgaccagc ttgtttgtgg cagctatcgc ctaccgaaag caaaacagaa agtcacaact      8160
     agcataaaga tggaattaga aggagacagt tatcgattat tacctggccc tccttcgcca      8220
     tcatgtcagc ataggccgcc gcctcggcca tgttcttcac tccaggaacc tggcagttcc      8280
     tccctttgat gtggcgaagc aggttcgcca acccagcctc gtcctcaacg atcgggtgat      8340
     cacggtcgtg agtgtaagac cagtggaaag gcctgcttcc cgcggatcct ccgccggagt      8400
     tggacgtctg cctcacttcc tgagaccggt ttgaagacct gcccccacct ctggagcctc      8460
     gtcctccgcc atgggacctg cccgaggatc gcctatccgc ggacgcagct gcctccggaa      8520
     tagcagccgc aggttccatc ctctcctctc tgggagaggc gaccccctgg tcgctcacga      8580
     ccaactcagc cgccggatgc acctccggct gggtccgagc tctcttcgga gaggacggtg      8640
     caccatcaga acgaacaact gcagatggcc cagacacctg agcgacctga ttgttatctg      8700
     actgacctgc tgcagcagag gtcccggtat tgatctcagg aagcgaggga tgagatgctg      8760
     aggcagatgc gctggagaca gctagagtgt ttcgagccgc ggtcaccgcg gccgacagat      8820
     caccagcacg agcaggagcc ccggcgttgg ctcgttgaac acgaagactt ggacgcctca      8880
     ttcttctaat gagcgggagt tctgaagtgg agctggagtc aggaggaact gaacagacaa      8940
     agcacgacat gtgttagtta gcagctcgag ttgcgcagct gtctcgataa ctcgtacatt      9000
     ttttaaacca aagaaaatat aacggaactc gtacctatag gcagatcagc ctcggggatc      9060
     ggttcaatcc gcgggacctc ttcgatcgga tctagctgtg ctgctggaag gacgattgcg      9120
     ggaactgctg gagctacggg aactgctgga gctacggcaa gagcagctac gatgcgatct      9180
     ctgctaaaag tggcccagtc agtctgacca cgtcggagaa gggttaacag ctcgagttcc      9240
     gtctccgaga gagtaacttc cttggtcctt gctgcaaacc atcaaaaaca aacaattagt      9300
     ttcagtacta acgttcagca aaagcagtca aggattcgac acaaacaaca aagaaaaatc      9360
     aagaggctca ggtctccatc tgacccaggt tggtagacca ggtccttgtt atcctcgcgg      9420
     gatcaaaact gccgattgaa tgacgatcta ctctgaaaaa gaagtacttg gatcgccaat      9480
     tggtgtctcg acaagccttc aaaccgccga ggaccagaga tccgggacga gcactgatgt      9540
     agtacgtccc ctggtcgctc ctagcattgg tcttgacctg gcagagctga agcaggtcat      9600
     ggcagctgaa ttctctgttt acttcccgag cccgggtgaa taacgccagc acatggcgga      9660
     cgaagttcgg gcacatctgg ggaaaggcga ggccgagaca gtagagcatc tcgaggatac      9720
     acgccggaat cgggaaaaat aggccacatt tctcgaagaa attggcataa gcgcagcacc      9780
     acccgaccgg cacgttctca ggatgcagcg gcggccttgg gagtatcata gttaccccca      9840
     ccggaacctg gcatctcctc cggaggtcga ccaggtcgct gttcgtcatc ggcgtgcctc      9900
     ctccttgctt ggcagccttt ttcttcttcg gcttgtcggc tctggttgac ggcggacgaa      9960
     ttggacccat tccgcctagg gttatgacgc gtctttgtac tcgcggcggt gacgccgccg     10020
     acctcgtctc ggacgaactt gaatcgtcgc cgtaactgtg gttgctttta ttctgggaat     10080
     cttcgaagtc gctcatcttt gggtttcgac agagaaggac gagagagatg aaagaaaaga     10140
     gcaaagaagg cagatcgaga aagagggaat agcagagaaa cgaaggagat agcaaaaaaa     10200
     ataaagacga gatttttcta cctctacaaa acaaagcgca gtaaataata aaggaggaga     10260
     gaagttacct tgagagttgt gtgagttgac gtgacgtcaa gtggagaggt gggaagttat     10320
     ttaaagccat catcaccacg attttcgaga ttgcagagat ctcttctccg cgcctgatct     10380
     ggaccgtcag atgcggtgcg ctgaagagac gctccatctc agccgtccac atcagcagcg     10440
     acttatctcg cgtatctcct cgaaatcttt cggttaaggg aatctgaaat taaatcgaaa     10500
     ttgttgagtt tatcctcaaa accgactgat cttatcacat ttatcttctc atcaagaata     10560
     ttttcgcaat cttacctgac ctatatgtcc gctcatcgag ttcgcctact cactcaatgg     10620
     gctggggggc aaa                                                        10633
//
ID   VANDAL20    repbase; DNA   ; ATH   ; 12720 BP.
XX
AC   AL161499;
XX
DT   27-2001 (Rel. 6.11, Created)
DT   27-2001 (Rel. 6.11, Last updated, Version 1)
XX
DE   Autonomous DNA transposon VANDAL20, a fossil.
XX
KW   MuDR; DNA transposon; Interspersed Repeat; Autonomous DNA transposon;
KW   MUDR superfamily; MUDR transposase; SUMO protease; VANDAL20.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-12720
RA   Kapitonov V.V., Jurka J.;
RT   "VANDAL20, a family of monstrous MuDR-like DNA transposons.";
RL   Repbase Reports 1(4), 31-31 (2001).
XX
DR   GenBank; AL161499; Positions  104443   91724.
XX
CC   VANDAL20 is a fossil of a MuDR-like autonomous DNA transposon.
CC   It has been active transpositionally relatively recently;
CC   its exon/intron structure is well preserved, and it is flanked
CC   by a perfect 9-bp target site duplication (TTAATTAAG).
CC   VANDAL20 has imperfect subterminal 52-bp inverted repeats (8
CC   mismatches, positions 17-68 and 12704-12653).
CC   A 8790aa MuDR-like transposase, VANDAL20p1, is encoded by 4
CC   exons (predicted by FGENESH and GENSCAN).
CC   CDS join(610..616,709..2656,2811..3405,3479..3568)
CC   VANDAL20p1:
CC   MEVDDIVVVQAGRWILYSTGEWEFKLDSCRHGRAMSLMGLRTLRDLELKVRHIFGLEKPS
CC   ISLELSYIFEDRLALLAGVLPGPTMIGSDWQFRCFKSLSIGDKSVNLFVCFREGDSVIVG
CC   PACEPRQTSASVVKYFEAGEPTFAGIVQFRDKPVPAVGGGYFAGLLSSVQDNMDAHPPNN
CC   HSDFVQSTTVCDLSSQWDISDELLLEALEAVEKSGAFVTAAGVDTSLPAEVPDSGDDSES
CC   LAESDESSSLSTGSDLEVSEFDDDTLHENTLQSDKEIVVHEDIGDDDFIEQPPKKKVLLQ
CC   NTNPGAMTEFLETCQKGISIDQVYGYEDLEPMFGDDDIDAKAAYVDLTKEDDNMFVGRTF
CC   ASREDFRIALSIYAINRIFRFKFTRYEKHYLVAECYDKKNCDWRVRAHQVGGDSEEYEVR
CC   LAKLEHVCKVQTRSRFSKHATSKVVAALLRAKYAKAFCGPRARDLPDSLLREHNVRMTYW
CC   KCWKAKELAVETAQGTDESSFSLLPVYLHVLQLANPGTVYHLETELDDIGDDRFKYVFLS
CC   LGASVKRLKYIRRVVVVDGTHLFGKYLGCLLTASCQDANFQIFPIAFAVVDSETDHSWTW
CC   FMNKLSEIIKDGPDLTFVSDRNQSIFKSVGLVFPQAHHGACLVHIRRNVKGRVHFTGERY
CC   NLMSSNIAESLNNALLPARGSPVVALLEFIRKMLARWFESRRKKISRTVGDIPIAVEREL
CC   MKRFKGALGMSVSAVGSWDFEVVAKDGEQFHVSLEQQSCSCLEFQAIRIPCTHAMAACHD
CC   RGLEFRTLVGEMHRLPMWSPTVQAPILLVRDPSEVKVPEEIRSLCLMPPKTKRPAGRPPK
CC   LRIHSVGEYEGNNKSKTPNKGGRCGGLGHNRVTCKTPLG
CC   A ~224-aa protein of unknown function is encoded by one or
CC   two exons in a region 4794-5464. X masks a short deletion
CC   reconstructed based on sequences of VANDAL20p2-like proteins
CC   encoded by different VANDALs.
CC   VANDAL20p2:
CC   MPDIPDDLLAKIVKLVADDRWWLLGPILKAGRRGRDMVYRDNVLKDACIYSLCSDPSDLY
CC   YFRNQDTDVVHQGRYRPFFERCLKAGNKTAIYYEGLRVVAEGCDLNGGIELLAQLVPEDG
CC   XGWRSMCLGNEAMAVHYLEQFGIFHAPLSTQRVRLWGEELVRDLRPYRRISHASYRKAFI
CC   YPLCKGIPSPDCAMDCALASSGYENFCNDCYLWWLSRKVCQMV
CC   VANDAL20p2 is 25% identical (blastp, E=3e-11) to VANDAL20p3,
CC   a 201-aa protein encoded by the second strand.
CC   CDS	complement(join(6864..7457,7570..7581))
CC   VANDAL20p3:
CC   MSLVKLGDDDAYYLAPVILTNKRGRDIALSRDIVKSANLTAFCLEPPKIYPGGVARSFFT
CC   RQALYYEALRLVTRERDIQGSLALLNELVPEDESATVAYAMFQMCAERGDLAGATFDMIF
CC   ESLGDRLLFNIYSEDLEAECEGLIDTLLAYEPANEDTFGPIWEFAYSKRINVPDCAYWHE
CC   GEHYCEGCYIFNAALRICEI
CC   VANDAL20's second strand encoded also a 958-aa protein called
CC   VANDAL20p4.
CC   CDS	complement(join(8459..9082,9169..9252,9331..9585,
CC   9664..9831,10128..10388,10477..10959,11102..11461,
CC   11629..12033,12144..12269,12368..12466))
CC   VANDAL20p4 (958 aa):
CC   MTKKKSSKSKTISPPVVMKQEPKRRNSRADAQRDTHAKSPAKSPASARGLRDESPISPAP
CC   AKIPAKSGGLRNESKQGDERCRDSEFTNPSLPCRLLHPSEFPDGGRLNIHSKPEYLGTLV
CC   ELLEGSEAWDELIASQFKKLFELPVARCHHSAKLIHGMLTRQLLTKNKHELWTVYGGFPL
CC   RFSIREFQMTTGLICDKLPSESKVEDYHDPAYLNRKQHRVTRDFVEMLHDIEFFLSYPWG
CC   RVSFESTMERFGPSAGEEDPIAELKARLSQKSSVCYGFPLALQLLVLKSVPALCSRIKDT
CC   VDFRNFIQKLFVDLGRTILLRESDVLDAEQTANLSVEYTLYQSETVKGDLSWPDEKEDEG
CC   VELIISLIKQKHHFKAETWPIHSIQCSSKDAPAADAEYVGVALDTDDVEFVGTRTVGPED
CC   KCEPSKAVKRAKKEYYPIRRKPFTRSSKKEGLNVEPLPTQDKAATPVGKTVHKKTAKQDA
CC   TLIKQAPLLSLLLMEKATETAAGAPETPKSKSKKKKETKQPVTRKRKREEVTSLSSGSSS
CC   SGLNHGPAVDTDIGVDGGGTVNLEGSVDPWELYGSTKNISEPQEMGRESPTSPVPTATQD
CC   KPMDTKPIKTMEEPLDLGNRAGSPRQTPCSPVTPIAQVIPDSSIVAVSPAYFEKERTNIR
CC   QPVPGKRVPIRSCFLDTTKYSVDPRISALFKSRTKEPAYTPLPKLDDGEFQTFKRLLEDD
CC   PQSEYTICTGHTVTNNHFLDIATKETWVNTEHMQLITGMLMKRRGKAYSQRRVAIIDTWF
CC   AMLLSTHYEDFQKCEDKAKYEWGKTIKGYITGKSTGIHMKSEFLKHVDVVYVPMNWGCSH
CC   WVGLVINLKQQSIDVLDSFISPTPEEAVEFQMTPIVSSCPTLTTEMTTEPFSCTRVTGLY
CC   DNKGDGDCGPVACKFLEMHAHGMDYTDMTALTDEVVIRIQKVYAMDTYAAFVEWEDEY
CC   C-terminal portion of VANDAL20p4 is similar to the SUMO-like
CC   protease, which is present in highly divergent forms in
CC   different VANDAL-like families. These proteases are functional
CC   elements of VANDALs that help them to multiply.
XX
SQ   Sequence 12720 BP; 3622 A; 2523 C; 2559 G; 4016 T; 0 others;
     ggaataagtt gagatttagt acgtttatga aacaaaatta tggaagtagt acactcacta        60
     tttataatta aggaaataat cgggtccact atcgactgta atacgcgtcg cttgtaatac       120
     agaaaaacat gggccatgat tcgtttgagg aaattacgtt taggggtcgc cgtttgtttt       180
     gttcgtttgc aggaaaccct ttgactgagt tcgggggttt gctttacaag atacaacaaa       240
     cgtcatgggc ctagcgtatt tctagatggg ccttaatcaa agtctgttta cagatttata       300
     attcgtagcg aaggcgttga agtcaacttc tttatcgtcg gcttattcaa tgccggagtg       360
     cgagctgaga gaaacaactg catttatgaa tgtttcaaat caacggaatt agttaacaag       420
     tcggtgaata aaattttata ataatcaaat tctctttagg tttttctcga aagtagctaa       480
     atttttgggg ggaatttgag ctcgtttttt tgaggattag gttattttta agtaacaaaa       540
     ggagatgatg attgtcagtt tcggttgtgt ttctttgtta ccgggaaaat tcatctttgc       600
     gtttctacca tggaaggtgg aattctgatc agaaaattgt tttgtaaact tgtcctcata       660
     atgtttaaaa gccttcagac tgataaaaag tgaattcctt ttttgcagtg gatgatattg       720
     tcgttgtaca ggcaggtaga tggattttgt atagcactgg tgaatgggaa ttcaagcttg       780
     attcttgtcg tcacggtagg gcgatgagct tgatggggtt aagaacttta agggatttgg       840
     agcttaaggt tcgtcacatc ttcgggctgg agaaaccttc catatctttg gagcttagct       900
     acatcttcga ggacagacta gctctgttag ctggtgttct gccgggtccg acaatgattg       960
     ggtctgattg gcagtttaga tgctttaaat ctctaagtat tggtgataaa tctgtgaatc      1020
     tgtttgtgtg ttttagagaa ggcgattcag ttatcgtcgg tcctgcctgc gaacctagac      1080
     agactagcgc aagtgttgtt aagtattttg aagctggaga accaacattt gcaggcattg      1140
     tacagtttag agataaacct gttccggcgg ttggaggagg ttactttgcg gggttattat      1200
     cttctgttca agataatatg gatgcccatc cccccaacaa tcactctgat tttgttcaga      1260
     gtacaaccgt ttgtgattta tccagtcaat gggacatcag cgatgaactt ctgttagaag      1320
     ccctagaagc agtggagaag tctggagctt ttgtcaccgc tgcaggggtg gatacatccc      1380
     taccggcaga agtacctgat tcaggtgatg attcagagtc tttagcagaa tctgacgaat      1440
     cttcctctct tagtacaggt agtgacttag aagtttctga gttcgacgac gataccctcc      1500
     acgaaaacac tctccaatct gataaagaga ttgttgtaca tgaagacatc ggggatgatg      1560
     atttcattga gcagcccccc aaaaagaaag ttttgcttca aaataccaac cctggtgcta      1620
     tgacagagtt tttggaaact tgtcagaaag gtataagcat tgatcaagtg tatgggtacg      1680
     aagatctcga gccgatgttt ggggacgatg atattgatgc aaaagcagct tacgttgatt      1740
     tgacaaaaga ggatgacaat atgtttgttg gaaggacctt tgcatcgagg gaagatttca      1800
     ggattgccct gtccatttat gccattaacc gtattttccg ctttaaattt actaggtatg      1860
     agaaacatta cttggttgct gaatgttatg acaaaaaaaa ctgtgattgg agagttagag      1920
     cacaccaagt tggaggtgac agcgaagaat atgaagtgag gctggcaaag ttggaacatg      1980
     tgtgtaaggt tcagactagg agccgctttt caaaacatgc tacgtccaag gttgtagctg      2040
     ctctcctaag ggctaagtat gccaaggcct tctgtggtcc aagagcaaga gatttacccg      2100
     actctcttct tagggagcac aatgttcgga tgacgtactg gaaatgttgg aaagccaaag      2160
     aattggctgt tgagacagct caaggcactg atgagagctc tttctcttta ttgccggttt      2220
     atcttcatgt cttacaactt gcaaaccctg gcacagttta tcatttggaa acagagttgg      2280
     atgatattgg ggatgaccga ttcaagtatg ttttcctctc attgggggct agtgtaaaaa      2340
     ggttgaaata tattcggagg gttgttgtcg ttgatggtac acacctcttt ggtaagtatc      2400
     ttggctgtct tcttaccgca agttgccagg atgcaaactt tcagattttt ccaatcgcct      2460
     ttgccgtagt ggacagcgag acagatcatt cttggacatg gttcatgaat aagctctcag      2520
     aaataataaa agatggccct gacttgacat ttgtctcaga ccggaatcaa tcaatattca      2580
     aatccgttgg tcttgtgttc cctcaagcac accatggagc ttgtttggtc cacatcagaa      2640
     ggaatgttaa aggaaggtat ggaaagaaga gtggccttca gctctagtgt ggcaagctgg      2700
     taacgcattc cgtctcaaag attttaataa tgttcgtgac aggataaaaa aaaaaggaat      2760
     atgtcttgtt ggaattacat tgaaggatcg ggtgttgcga attggagtag ggttcatttt      2820
     acgggagaga gatataattt gatgtctagt aacattgcgg agtctttgaa caatgcgtta      2880
     ctaccagcta ggggaagccc cgttgttgca ttgcttgaat tcattaggaa aatgcttgct      2940
     aggtggtttg aatctaggag gaaaaaaata tctagaacgg ttggcgacat acccattgct      3000
     gttgaaaggg aacttatgaa gcggtttaaa ggtgctttgg ggatgtctgt ttcggcagtt      3060
     ggcagttggg attttgaagt tgttgcaaag gacggtgagc agttccacgt ctctttagaa      3120
     cagcagtctt gctcttgctt ggagtttcaa gcaattagaa tcccatgtac acacgcaatg      3180
     gctgcgtgtc atgatagggg tttggagttc agaactttgg ttggagagat gcataggctc      3240
     ccaatgtggt caccaacggt ccaagctcca atcctccttg tacgcgatcc atcggaggtt      3300
     aaagtccctg aggaaataag gtcactgtgt ttaatgcctc ccaaaacaaa aagacctgct      3360
     gggagacctc ctaagttgcg gattcattcg gttggggaat atgaggtcag ttacatcttt      3420
     ttcatcaata tatttctata taatccaaag gcaacaatcc tttttctttt gcatgtaggg      3480
     aaataacaag tccaaaacgc ctaacaaagg tggacgatgt gggggattag gtcacaatcg      3540
     tgttacgtgc aagacccccc ttggatgatg ctatttaaac ttagaaagat ttggctagtt      3600
     ttttgttatt aatgaaggag cttttttcgg tgttgttttt gtttttggta tcggggtaga      3660
     catttttacc caatatgttt taacaacaat gtctaattcc taaacttctt ttgaagttgc      3720
     aagtattact gatgaataga tactactttt tgtgtattat tcaagtagca tctggcgagg      3780
     tatttcagtt caatcagttg ttttcacatc ttcaccaatc gtttatctca tttaggtata      3840
     cagataacgt tgtacagttt atacaacgta cagagatccc ccgtatacct ttttcaccgt      3900
     acagatataa ccgtacagtt tatacagcgt acagatatcg ccgcacactt aataagcgta      3960
     cagattgcgt tgtagccgta cagatagtgg tctacagatt gtgctgtaca tatagcgatg      4020
     tacagatagt ggtgtacaga ttgtgctgta cagatagcgg tgtacagata gcgatataca      4080
     tatagcggtg tactgatagc gatatacaca tagggttatg catattgtct aattttcttc      4140
     caaagtggct tgtactactg atcactgcat accacattta ctgcattttt gtagccttat      4200
     tggtcatgta tttttgttta taatttgttg cactctagtg attgcagcgt acttatggtg      4260
     gtgtactgaa agtggtgtac agatttcgct gtacaaacag ctttacagtt tgtgctgtac      4320
     agaaagcggc gtacagataa tgctgtacag attgggttgt acagagagcg gtgtacagat      4380
     agcgatgtac agatagcggt gcacagatag cgatgtacat caaggttatg catattgtct      4440
     aattttcttt caaagtggca tgtactactg atgacttgat accttcctag ccttattggt      4500
     catgtatttt cgtttaaatt ttgttgcact ctaccgactg cagcgtactg acggtggtgt      4560
     accgaaatcg gtgtacagat ttcgctgtac agtttaattt ttactattag tgggtaattt      4620
     taaagagtag gcatcatgtc attaatatgt tttggtttga ggatgtaatt attctcaact      4680
     gtaactttcc caaccactac tttattgtgg cttatatatt taatcaacct gcaataacat      4740
     cgtagaagaa gaaaacttgt ctttgtttcc tctcaaagat tatccacaaa aaaatgagaa      4800
     cagaaatgcc tgacatccct gacgatctgt tggctaagat cgtcaagctc gtggctgatg      4860
     atcgttggtg gttgctaggt cctatcttga aggctggccg aaggggaaga gatatggtgt      4920
     acagagataa cgttttaaag gatgcttgca tctactctct ctgttctgat ccaagcgatt      4980
     tgtactattt ccggaaccag gataccgacg tcgtgcatca agggaggtac cgtcctttct      5040
     ttgagagatg cctcaaagct ggcaacaaaa ctgccatcta ctatgaaggg ctaagggtgg      5100
     tggctgaagg ttgtgacctc aatgggggta ttgaacttct agctcagctg gtcccagagg      5160
     atggcgctcc atgtgtcttg ggaatgaggc tatggcggtc cactatctag agcagtttgg      5220
     gattttccac gctcccttaa gtacacaaag ggttaggcta tggggagagg agttggtcag      5280
     agatttacga ccatatcgga ggataagcca cgcttcttac cggaaggcgt tcatctatcc      5340
     actttgcaaa gggatcccgt cgccggattg tgccatggat tgtgctcttg cttcaagcgg      5400
     ttatgagaac ttttgcaacg attgttactt atggtggttg tcaaggaagg tctgtcaaat      5460
     ggtctgaagg tattctcctt atttttccat attgatcaat gtttaaatta tattatgact      5520
     atgcggatgt aatttgtttt tgctttttgc tatataatta tagttcttca gctattatct      5580
     tactatgttg tttaattatt gttttaagtt gttttcgcac tcctggatgt ataatctttg      5640
     tttatgtatt atttatatat atgttcttat ttttcgaaag tttgtcatga cctttattta      5700
     tgccgtgtgt aagtatagta tatatttaga aagattgtct ttcacttgaa ttagtttcag      5760
     aaacataacg tatggcgtta cagttaataa tcacattttt ggtcactttg aaactacccg      5820
     ccatttacac tataaaacct cgcgccgttt caccagtttt gctttacgtt ctttaaaata      5880
     aatttttcta tgatgttcct aactcttttc ttctccacag atgaacaagt ttttaatatg      5940
     tgtcaataac caaagaactg atatgttaat gatatgattg gaacttcagc acacaccttc      6000
     cacttgcatt tccttggatg cataaatgat tggacatgta ttttaaatat atgtctatgg      6060
     ctagtggtga gtctttctcc tactgatact tataatttgt ttttgaataa attataaacg      6120
     caatcatatc attattttct caccatttca atttgtgttg agactatttt taccagaatt      6180
     cgcataccga gatttttttc aaatgcttat taatatattc attaatattt agagatgaac      6240
     aaggtttgga tatgtttcgt ttatgtagtg aggaggtgag aactcataat taccaatatg      6300
     attgacactt caggctacac tttccacttg catttcttgg atgcccaaat gattagacat      6360
     gtagtttaaa tttattatta tagttagtgc ttagtcttac tcattctgac actaataatt      6420
     atcttttcag taatatataa aaccaaacat atatctatct tctcaccatt tcaagatttg      6480
     acaaaaagag gttcttccac actaataatt actttgtttc caaagcccca agcggactgc      6540
     cactaatttg cctcaccgct aagttggtgc ttttgagagc acaaaatctt gagaaatcat      6600
     ttacccctga ccgaaataaa ttatctataa aaaccagaca tttcaacctc aattttacat      6660
     ttatattaca tccagcggta atttacatta atattacaca aacatttata cattttcaag      6720
     cggaatttta cattaacact aaacttctac taggtacttc aagttacgtt cttactaatt      6780
     agacaatttg aaacataatt ctacaataac tgcaaataga tattaaaata tttcttcaga      6840
     agttattctc attgtttgta tctctacaga atttcacaaa ttcgaagtgc tgcattgaag      6900
     atgtaacatc cttcacagta atgttcgcct tcatgccaat aagcacagtc tggtacattt      6960
     attctcttag agtaagcaaa ctcccagatt ggaccgaagg tatcttcatt agctggttca      7020
     tacgccaata gtgtgtcaat caaaccttca cattctgctt ccaaatcttc agagtaaata      7080
     ttaaacaaaa gcctatcacc taagctctcg aatatcatgt cgaatgtagc cccggctaga      7140
     tcaccccttt cagcacacat ttggaacatg gcataggcca cagtcgccga ttcatcttca      7200
     ggaactagtt catttagcaa agcaagggaa ccttgtatat ccctttcacg ggtcactaaa      7260
     cgcaaagctt cataataaag agcctgacgt gtaaagaagc ttctagctac accaccagga      7320
     tatattttcg gtggctcgag acagaaagca gttagatttg ctgactttac aatgtccctc      7380
     gagagtgcaa tgtcccttcc tcgtttgttt gtgagtatca ccggagctag gtaatatgcg      7440
     tcatcatctc ccagcttctt cacaataata tggaagatat catctagtaa atcttataaa      7500
     gacattactt ttgaggttta tgaagttaaa aaggagcaaa gaaaatgagg tgtggatgag      7560
     taaacgaacc actaaggaca tatttatagg aaacaaaaac aaaactaact ttcatacttt      7620
     aacctaaacc tatctggact attgtactaa tgaaacatcc gtacaccaca ggcgctgtac      7680
     agaacaaatc tgtacattga aatataagaa caaatccgta tgctttatat acgatacaga      7740
     aaccatatgt aaaatcacaa gccaacaata acctatgtag atgaatcata acagtccgta      7800
     cacccaattc actgtacaga taatagccgt acacccaatt cactgtacag ataacaatcc      7860
     gtacaccaca gacgatctac agaacaatct gtacatctta atatatgtac agtctccaat      7920
     gtgtacaccg catctgccgt tcagacacat taaatatcaa caactaagtt cttaaaaaac      7980
     aataattagt tctttaataa ttaattcaaa caatatatgt tctcttccag tacgccacaa      8040
     taattagttc tttaataatt aattcaaaca ataattagtt ctttaataat taattcaaat      8100
     aatatgtatg ctgtacaaat acccattcgt acactgttct tatagtacac tatgtatgct      8160
     attcttatag tacactatgt atgctgtaca gaaaacaatc cgtacacctt acacggtgta      8220
     cagaagcaat ctgtacaccg tgggtatata caaaataata agttataagt catattaatt      8280
     ctttgacatc aaataatata caaaaaacat tctttcgatt ttttaagtca taagcataag      8340
     ttcaaatcta ataaatatac aaatgcatac ttcgatctca agtcctaaat ataagtctta      8400
     agtcataagc cccgaataag tttagaaaca cccaaactct aagtttagga acaaataact      8460
     agtactcgtc ctcccattca acaaaagcag catatgtatc catcgcataa accttctgaa      8520
     tcctaatcac cacttcatcc gttagagccg tcatgtcagt gtaatccatt ccatgagcat      8580
     gcatttcaag gaacttgcat gccacaggcc cacagtctcc atcgcctttg ttgtcgtaca      8640
     gtcctgttac ccgtgtacag ctgaaaggct cagtcgtcat ctcagtggtg agagttgggc      8700
     agctactgac gattggggtc atttggaatt cgactgcttc ttctggagtt ggggagatga      8760
     acgagtctag aacatctatg ctttgttgct tcaagtttat caccaatcca acccagtgag      8820
     agcaccccca gttcattgga acgtagacaa catcaacatg tttcaggaat tccgatttca      8880
     tgtgtatccc agtcgacttc cctgttatgt atcccttgat tgttttcccc cattcgtact      8940
     ttgccttgtc ctcgcatttc tggaaatctt catagtgtgt ggacagaagc attgcaaacc      9000
     atgtatcaat gattgccacc cttctttgac tgtatgcttt accccggcgt ttcatcagca      9060
     ttcctgtaat tagctgcata tgctgcaact cataatagag taagtcatgt caccaaaccc      9120
     attttagcta cgaacgcatg aaatattatt agtttttgct cataatacct cagtgtttac      9180
     ccatgtctcc ttcgttgcaa tgtccaagaa gtggttgtta gtcactgtgt gcccagtgca      9240
     gatagtgtac tcgctgttta gcttggatgt tagatttaaa aaacattgtg tctttttcta      9300
     ataaaactga gattaacaag gatcaaacct ctgtggatca tcttcaagca gccttttaaa      9360
     tgtctggaac tctccatcat ccaactttgg gagaggtgtg tatgcaggtt ccttggttct      9420
     gctcttaaac agagcactga tcctaggatc tacgctatac ttagttgtgt cgaggaagca      9480
     agaacgtatt ggaacacgct tacccggcac tggctggcgt atattggttc tctccttctc      9540
     aaaataagca ggtgaaacag caacaataga agagtcgggt ataacctggg atcaaaacat      9600
     acaagctagg taaaatattt gtatctcaga ttgtgtatgt aatttattac tcgcaatcta      9660
     gacctgagca ataggtgtta ctggtgaaca aggtgtttgc cttggcgacc cagctcgatt      9720
     tcccaaatcc aatggttctt ccatagtctt tattggcttg gtgtccatag gcttgtcttg      9780
     cgtggcggtt ggcactggcg aagtagggct ctctcttccc atttcttgtg gcttacaaaa      9840
     aaaaaaaaaa agttatgcaa taacaataaa ccaaaagggt tagctttatg gttaacacac      9900
     aagcagcaac atgtgctcgc gaaattaata cctctgcaca tttttcattc tgggctgttt      9960
     ctcattcttc ctcatttagc ccgtctttta gaaggggaga tgtaaggatc tctgtagcta     10020
     tcttctataa agtcccaaca taaaagtatc atcatggaga attgcataat taaataagca     10080
     aaaatctaca taaaaccatg ttttgctttc gtatatgtaa gtattacctc tgaaatattt     10140
     tttgttgatc cataaagttc ccatggatca acagagcctt ctagatttac agttcctcca     10200
     ccatctacac ctatgtcagt gtccacagct ggtccatggt tcagccccga ggatgagctt     10260
     ccagaagata aagaagtaac ctcctctctt ttccttttcc gtgtaacagg ttgctttgtc     10320
     tccttcttct tcttgctttt cgatttaggg gtctcaggag cccctgcagc agtttcggtg     10380
     gccttctcct tcaaattttt caaaagatcc ttacttatgt tgtagcggag gtcttcaagt     10440
     tgttgagtaa accatttctt cattcagcca attcaccatg agtaacaaac tgagaagagg     10500
     agcttgcttg atcagcgttg catcttgctt tgctgtcttt ttatggacag tctttccaac     10560
     gggtgtagca gctttatcct gagtaggcag gggttcaaca ttcaatcctt ctttcttact     10620
     tgaacgcgtg aaaggcttgc gacggatggg gtagtattct ttctttgccc gtttcacagc     10680
     tttacttggt tcacatttgt cttctggccc aacagttcgt gtccctacga actctacatc     10740
     atcagtatca agcgctacgc caacatactc ggcgtctgct gctggagcat ctttggaaga     10800
     gcattgtatg ctgtgtatgg gccatgtttc agccttgaag tggtgcttct gcttgatcag     10860
     agagattatc aactccaccc cttcatcctc tttttcatcc ggccacgaca gatccccctt     10920
     cacagtttct gactgatata gtgtatattc cacagacagc tacatgatta aaagaaaagc     10980
     acattagctt actattgatg catcttttgg atttaaggtg ttctgtacaa ttccctaaat     11040
     caataagttc aaaacagtcg ctataatgtt agaataaaag ccaatagtca acattactta     11100
     cattagcagt ttgctcagcg tcaagaacat ctgattcccg cagaagaatt gtgcgaccaa     11160
     ggtcaacaaa aagcttttgg ataaaatttc tgaagtcaac agtgtctttt atcctactgc     11220
     atagggcagg aacggacttg agtaccagga gctggagtgc aagagggaac ccataacaga     11280
     cactgctttt ctgagacagc cgggccttca gctccgcaat tggatcttct tctccagcag     11340
     aagggccaaa ccgttccatt gttgattcaa aagaaactcg cccccatggg taagacaaga     11400
     agaattctat atcatgcagc atttctacaa agtctcgtgt aacccgatgt tgtttcctat     11460
     tgctgcatac aacaacccat caatcagcac taccaatgca agactcagct tcttccatgt     11520
     tgagaatcgc ttccgagtct ccgctttagc atcctccctt agcatatcta tcacatccat     11580
     taccgtgact atacttttcg caccaaacag ccggttccaa acagacaggt atgctgggtc     11640
     gtggtaatct tctaccttag attcagatgg aagcttatca caaatcagcc ctgtggtcat     11700
     ttggaattct cgtatagaga accggagtgg gaaccctcca tacactgtcc acaattcatg     11760
     tttgttcttc gttagaagct gtcttgtaag catcccatga atgagttttg cagagtgatg     11820
     acacctagca actggaagtt caaacaattt tttgaattgg gacgcaataa gctcatccca     11880
     cgcctctgaa ccctctagta attccaccag agttcccaaa tactccggct ttgagtgtat     11940
     gttaaggcgt cccccatccg ggaactccga tggatgcagc aaacggcaag ggaggctcgg     12000
     gtttgtaaat tcactatctc tgcatctctc atctcctatt attcatctca gaaaaaaacc     12060
     aaatcaaaaa aaatgttcgg tgatgataga gtcggattca tcaaattcac cggcaaggga     12120
     caacaaataa gagtttgttt accttgttta gattcgtttc ttaatcctcc agattttgcc     12180
     ggaattttcg ccggcgctgg tgaaattgga gactcgtctc ttaaccctcg agcactcgct     12240
     ggagatttag ccggagattt tgcatgcgta tctacaaata acccagaaac ctaattatga     12300
     acccctatta acccataaat tatcccgaaa attgcttgag gaaccgtcat cagtataacg     12360
     acttacctct ctgtgcatct gctctggagt ttcgccgctt gggttcttgt ttcattacca     12420
     ctggagggct tattgtcttc gatttactcg acttcttctt cgtcattgca gatattcttc     12480
     ataatacaga aaccaacttc tctcaacttc cttaagaaac cagaaatatg aagagtcgag     12540
     aagaaacctc ttttttttgg tttcactggc aactctgtaa ttacatggaa atcgtagtgt     12600
     cagaaccggg gtaacaaaaa agccaacaat aaccacctgt agtacatttc atattgtaaa     12660
     tagtaagtgt actagtttca taattatgtt ctgtaaacgt actagttggc aaacaaactc     12720
//
ID   ATIS112A    repbase; DNA   ; ATH   ; 5099 BP.
XX
AC   .
XX
DT   01-FEB-2001 (Rel. 6.01, Created)
DT   06-NOV-2003 (Rel. 8.1, Last updated, Version 3)
XX
DE   ATIS112A is an autonomous DNA transposon.
XX
KW   Harbinger; DNA transposon; Interspersed Repeat; TIR;
KW   3 bp-long target-site duplication; Autonomous DNA transposon;
KW   transposase; ATIS112A; Harbinger superfamily.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5099
RA   Kapitonov V.V., Jurka J.;
RT   "ATIS112A.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
RN   [2]
RP   1-5099
RA   Kapitonov V.V., Jurka J.;
RT   "ATIS112A is an autonomous DNA transposon.";
RL   Repbase Reports 3(10), 182-182 (2003).
XX
CC   [2] (Consensus)
XX
CC   ATIS112A is an autonomous DNA transposon.
CC   There are several copies of the transposon in the A.thaliana
CC   genome which are more than 90% identical to each other.
CC   They are bordered by 3 bp-long target site duplications.
CC   ATIS112A has 25 bp-long terminal inverted repeat.
CC   ATIS112A encodes two proteins, ATIS112A-1p and ATIS112A-2p.
CC   The 320-aa ATIS112A-1p is a putative DNA binding protein that
CC   includes the SANT/myb/trihelix motif. The protein is encoded by
CC   3 exons (834-922, 1262-1444 and 1498-2188).
CC   ATIS112A-2p is a 484-aa Harbinger-like DNA transposase, which is
CC   related to the transposase encoded by the bacterial IS112/IS5
CC   transposons (pos. 3583-5034).
CC   There are several other highly divergent families of Harbingers
CC   present in the A. thaliana genome [1].
CC   Originally, the transposon was described by [1]. The consensus
CC   sequence derived by [2] encodes the complete transposase.
XX
FT   CDS           0..0
FT                 /product="ATIS112A-1p"
FT                 /translation="VIWRICNKVCCFLIEYNPNAKVVGLRSNASFINLLN
FT                 SQDDSHILPPNPYECFELGSANVPVYSTEWSDDDPSEDEAPIAGKKGRKG
FT                 RKGRNGWLNTSKDPVVGNEQKGAAFWERIAAYYNSSPKLKGVEKRGHICC
FT                 KQRWSKVNDVVNKFVGSYLAASKQQTSGQNDDDVVSLAHQIFSKDYGCKF
FT                 TCEHAWRELRYDQKWIAQSTHGKAKRRKCEDDSEPVGLEDKEARPIGVKA
FT                 AKAAAKAKGKGKLSPDEGEETNALKEIKSIWEIKEKDHAAKEKLIIIKEK
FT                 KNRTKLLERLLGKTEPLSDIEIELKNKLINELLA"
XX
FT   CDS           3751..5010
FT                 /product="ATIS112A-2p"
FT                 /translation="MAGSSSNYNLDDMFDDKFDQCFDQALESYGNRQRVK
FT                 PRKKKAYIERNREEGHIQLVNDYFTENPTYPPHIFRRRFRMNKPLFMRIV
FT                 ERFSNEVPYFKQRRDATGRLGFSALQKSTAAIRMLAYGIAADAVDEYLRI
FT                 GESTSLLCLEHFAEGIINLFGDEYLRRPTRDDLIRLLHIGEQRGFPGMIG
FT                 SIDCMHWEWKNCPTAWKGQYTRGSGKPTIVLEAVASQDLWIWHAFFGPPG
FT                 TLNDINVLDRSPVFDDILQGRAPKVKYVVNGKDYNLAYYLTDGIYPKWAT
FT                 FIQSISIPQGDKASLFATTQEACRKDVERAFGVLQARFAIVKHPALFHDK
FT                 VKIGNIMRACIILHNMIVEDERDGYTQFDVSEFVHPESASSSQVDFTYAT
FT                 DMPSNLGNMMATRARVRDRIKHEELKADLVEHVW"
XX
FT   CDS           join(834..922,1262..1444,1498..2188)
FT                 /product="ATIS112A-1p"
FT                 /translation="VIWRICNKVCCFLIEYNPNAKVVGLRSNASFINLLN
FT                 SQDDSHILPPNPYECFELGSANVPVYSTEWSDDDPSEDEAPIAGKKGRKG
FT                 RKGRNGWLNTSKDPVVGNEQKGAAFWERIAAYYNSSPKLKGVEKRGHICC
FT                 KQRWSKVNDVVNKFVGSYLAASKQQTSGQNDDDVVSLAHQIFSKDYGCKF
FT                 TCEHAWRELRYDQKWIAQSTHGKAKRRKCEDDSEPVGLEDKEARPIGVKA
FT                 AKAAAKAKGKGKLSPDEGEETNALKEIKSIWEIKEKDHAAKEKLIIIKEK
FT                 KNRTKLLERLLGKTEPLSDIEIELKNKLINELLA*"
XX
SQ   Sequence 5099 BP; 1536 A; 851 C; 1017 G; 1695 T; 0 others;
     agcaagtcta gcaagggttt ttagtgggtt tctatgttgg gttttttaaa aaaaatgggc        60
     ccggatgaaa aaaaacagaa caatccattt aggatcgttc ctaaaattgg gtttttcgcg       120
     acccaataga aactcatacg tggcttcatt ttattgggta aacgttttga ctaaacaaaa       180
     aaaaaaaaca cgcgtttttt tgttttcttc ttctctctga tttcttcgtg gtcgccgacg       240
     gagaccccaa atcgattctg cttctaacca aatcgaaacc ctcatcatgg ttcgtatctc       300
     ttcttcttcg aatcgatttg attttatgag ctttgaaatt gaattttgaa agagattatg       360
     atctgattgc attggtatgt atattgaatt acgaattctg ggaattttta gttcgtgtac       420
     taagcttgag ctgcatatgt tgttattagc ttgttcttag ttttctatat gtttgcttca       480
     ttctcagtga agtcatattg ttgtttctat attaacatag aaatttcaga tctttatgtg       540
     tttgttctgt agctttgttt gtacctatat ccttcaaaga aaaacttacg gattcaggta       600
     tatgttttgt tgtggtagat agaggagcat tatgtggctc aaggtttaag tattgttgga       660
     tactttgatt tggttgtctg aaaagtttag atgtcgtgta ttcattgcat aaactggctt       720
     ttgcttgtta atctttcaag ccttcaaagc atctggacaa cgattttgca ttatgtattt       780
     gatcttttgg tagttcgttt taattaagtt tttgtttcta tattttttct gaggttattt       840
     ggaggatttg caacaaagtt tgctgcttct taattgaata taatccaaat gcaaaggtgg       900
     ttggcttgag atcgaatgca aggtaattta tcattttgta tttatttatg tgatcaatgc       960
     tttgctgtta tttactgtga taaatgcttc tttgttgata taaaactgta gttagataaa      1020
     cgtcaattgc ttttgtaggt aaacgtcaaa tgctagttct tatagcattt aaaactgtaa      1080
     aactgtgatg attgcttggt aggttaattt tagtcaatag tatttagtat ggcattgatt      1140
     gtgagttgtc taacaaagcc ataatttgcc tttaaaacac aaaaccgtaa cctttgattt      1200
     ttaaaacaca caaccacaaa caataatatg attcaccgaa tccatatcat catacttcaa      1260
     gctttataaa ccttttgaac agtcaagatg acagtcacat tctcccacca aatccatatg      1320
     aatgctttga acttggatca gcaaatgtcc ctgtgtatag cactgagtgg tctgatgatg      1380
     atccaagtga agatgaagca ccaattgctg ggaaaaaggg aagaaaggga agaaagggaa      1440
     gaaagtcaag aaaccaaaga ggaattggtc atcaactgaa gatgttgttc tcataagtgg      1500
     gtggctgaac acttccaagg atccggtggt gggcaatgag caaaaggggg cagctttctg      1560
     ggaacgtata gcagcgtact acaactcaag tcccaagctc aaaggtgtgg aaaagagagg      1620
     ccacatatgt tgtaaacaaa ggtggtcaaa agtgaatgat gttgtgaaca agtttgtagg      1680
     gagctacttg gctgcaagca aacaacaaac aagtggtcaa aatgatgatg atgtggtgtc      1740
     tttggcacat cagatcttct caaaagatta tggctgcaag tttacttgtg agcatgcttg      1800
     gagggagctt agatatgatc aaaagtggat tgctcagtct actcatggga aagcaaagag      1860
     aagaaaatgt gaagatgact ctgaacctgt tggccttgaa gacaaggaag ctcgtcccat      1920
     tggtgttaag gcggccaaag ccgcagccaa agccaaagga aaaggcaagc taagtccgga      1980
     tgaaggtgaa gaaaccaatg ctttgaagga gataaaaagt atatgggaga taaaagagaa      2040
     agatcacgct gccaaagaga agctaatcat tattaaagag aagaaaaata ggactaagtt      2100
     gcttgagcgt ctgttaggga aaacagaacc tctatctgac atagagattg aactgaagaa      2160
     caagttaatc aatgagttgt tggcttgagt ttcagttgta ggttaagtgt ctgtttctag      2220
     attatggttc tctaagtgtc tgttttaact ctgtttttaa gtttagtgtc tgtttcaagt      2280
     gtgtttttat atttagtgtc tgttttttgt ctatgtttta tgtttaagtg tatgactatg      2340
     ttaatcaatg agttgtttca gtttatgagt ttgagttgtt tcactttggc actttcagtt      2400
     tcagtttatg agtttgagtt gtttgacttt cactttcact tcagttctgt tctatttttg      2460
     atctagtctc caagcttact tggtatttta ctgatgcaga acatgtgaga aagaagaaaa      2520
     tgaagagcca acaaaacaaa agttaggtct tgttccagac gaccagtttc ttgctcaaaa      2580
     tccggttaag ttttcttctg actcttacct tttttttttt tttttggttg tatcttatta      2640
     gcagtcatac atttgcagaa taacagaaca gtaggattat ggtttctatt ttagtcaact      2700
     ggttaacgag cttggttgtg ctttggatct tcagtgtgga gttttattat tagttttctc      2760
     gcacaaattt cttcatactg tatctgttct aaaaaattat ggctatgtag gaatagaatt      2820
     tgggctacga agaagtaaaa ccagatacat tttttcgatc tgcaatagat gtatgattga      2880
     aggtatcaat gattacaagc tttaaacatc aatctcctat gtatttttga tagaatttgc      2940
     agacaatgaa acttaaacat gcacctttat tagcttcacg ctcactaatc tgtagaatca      3000
     ttttctgcct tggagctttg agtgtgtata tataacagaa tcatatcggg tgaatcctgc      3060
     agggacaatt gagcttcact acctgttagg tcttgcacca cacatggagc atctaactga      3120
     ggaaacagag ccaacaaaac aaaagttagg tcttgtatct tactagcaac aaaaacgttt      3180
     cagaaacgtt gaaaaagtta taagtccgtg ctctttggaa tgtattatat cattggcaac      3240
     caatttgttt gtttgtgaac attttcaatg attttggacc gcatttaatt ggagtcacat      3300
     gtggacgcag accgcattta accggtttga caaaatatgt gtttctttta acgatgacaa      3360
     accactactg aatcacagaa tcataagcct tgttttaatg gagaagaaag aatatcaagt      3420
     ccaagtgttt gccattcttt agtgccgaca tcaagtactt tagtatgtca ccaaggaatg      3480
     tactttagtt ttgtcaccac aaacttgatt gttcttttca tttgaaccat tgattattgt      3540
     accattcatt tgcaccattc actactcctt tatattgtat gaatgaatgt acaccgaata      3600
     aaaagaatcc gaacactact cctttattgt tctatatata atccgaacac tacttcaata      3660
     tttctatcaa ctctctttat cacaataata aacactcttt tctatcaaat catttttatc      3720
     tcttctctct ctttctataa ttttgctaaa atggcaggtt cttcttcaaa ctataatctc      3780
     gacgacatgt tcgatgataa gtttgatcaa tgctttgatc aagcattaga gagttatggt      3840
     aatcgccaac gagtcaagcc aaggaaaaaa aaagcatata tcgaaagaaa tcgtgaagaa      3900
     ggtcacatcc aattagtgaa cgactatttt acagagaatc caacatatcc tccccatata      3960
     ttccgacgcc ggtttagaat gaacaaaccg ttgttcatgc gtatcgttga gagattctcc      4020
     aatgaagtcc catactttaa acaaagaaga gatgccaccg gaagactcgg tttctcggca      4080
     ctacagaagt ctacagcagc aattcgtatg ctcgcatatg gtattgcggc tgatgcggtt      4140
     gatgaatacc tccgaattgg tgaaagcacg tcgctgttat gtttggaaca ttttgcagaa      4200
     ggaatcataa atctgttcgg ggatgagtat ctaagaagac ccacacgaga tgatcttata      4260
     cgacttctcc atattggaga gcaacgtgga tttcccggga tgataggaag catcgactgt      4320
     atgcattggg agtggaaaaa ttgtcccacc gcttggaaag gacaatatac acgtggatca      4380
     ggaaaaccaa caatcgtttt agaggccgtt gcttcacaag atctctggat atggcacgcg      4440
     ttttttggac ctccaggtac cttaaacgat atcaatgttc ttgaccgctc accagttttt      4500
     gatgatatat tacaaggtcg agctccgaaa gtgaaatacg tagtcaacgg gaaagactat      4560
     aatttggctt actacctcac agatggaatt tatcctaaat gggctacatt tatccaatca      4620
     atttcaattc cacaaggtga taaagcttct ttatttgcta caactcaaga agcttgtcgt      4680
     aaagatgttg agcgtgcttt cggagttttg caagctcggt ttgccattgt caaacatcca      4740
     gctctttttc atgataaggt gaaaattggc aatattatgc gagcatgtat aatacttcac      4800
     aatatgatag tagaggacga acgagatggg tacactcagt ttgatgtatc tgaattcgta      4860
     catccagaat cagctagctc ttcacaagtg gatttcacct atgctacaga tatgccttca      4920
     aatctcggta atatgatggc cactagagcc cgagttcgtg atcggattaa acatgaagaa      4980
     ttgaaagctg atttagttga acatgtatgg caacattatt accagaatca atcttaaaat      5040
     gtaatcgttt tttttttcgc ttttaaatat gtttttttgc ttcttctttc tatatcatg       5099
//
ID   ATGAGPOL1_I repbase; DNA   ; ATH   ; 5977 BP.
XX
AC   .
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATGAGPOL1_I , an internal part of ATGAGPOL1 LTR-retrotransposon - a
DE   consensus.
XX
KW   gag; pol; LTR retrotransposon; ATGAGPOL1_LTR; ATGAGPOL1_I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5977
RA   de la Bastide R.M., Parnell D.L., Kaplan N., Gnoj L., Hameed A.,
RA   Schutz K., Hasegawa A., Gottesman T., Shohdy N., Granat S.,
RA   Jensen K., Johnson F.A., Lodhi M., Dedhia N., Martienssen R.,
RA   McCombie R.W.;
RT   "A. thaliana BAC T32N15 from chromosome V.";
RL   Direct Submission to Genbank (00-DEC-1997)(September,; AC002534).
XX
RN   [2]
RP   1-5977
RA   Kapitonov V., Jurka J.;
RT   "ATGAGPOL1_I.";
RL   Direct Submission to Repbase Update (00-JAN-1999).
XX
CC   [2] (Consensus)
XX
CC   ATGAGPOL1_I is an internal part of ATGAGPOL1 LTR-retrotransposon;
CC   its LTR is deposited as ATGAGPOL1_LTR. Presumably, ATGAGPOL1
CC   retrotransposon was an active element several millions years ago.
CC   ATGAGPOL1 proviruses and solo LTRs are bordered by 5 bp-long target
CC   site duplications.
CC   The consensus sequence has been reconstructed based on 13 individual
CC   copies present in the GenBank 109.0 release. There are two major
CC   subfamilies of ATGAGPOL1. Retroelements from the first subfamily
CC   are ~97% identical to each other; the second subfamily is a little
CC   bit older since its copies have 95% mutual identity. There is ~92%
CC   identity between sequences from different subfamilies. Examples of
CC   the first subfamily include copies found in AB01821 and AC002534
CC   GenBank loci; copies found in AF0588825 and AC006268 represent the
CC   second subfamily. There is 97% identity between consensus sequences
CC   reconstructed for each of these subfamilies.
CC   Two gag- and pol-like polyproteins are encoded by separate ORF1
CC   (position 253-1629) and ORF2 (position 1669-5067). ORF1 codes for
CC   two Zn-finger CCHC-type domains (aa positios 362-375 and 384-400)
CC   analogously to gag-like proteins in many retroviruses including HIV2
CC   and caulimovirus.
XX
SQ   Sequence 5977 BP; 1328 A; 1022 C; 2042 G; 1585 T; 0 others;
     atttggtatc agagcgatta cggttctagg atgtgtagaa aaattaattg atgaattatt        60
     ttcctgttga ttgatgtggg atgagctagg gtgttagcat attgaggatt gattatggag       120
     tgtttagtca attgtgtgtt gttggagtcc tagcatcatc ttctccgagc cttaaatgag       180
     attccacggt aagttgtttg tgatatattc gtttgtttta gtttcttagc catttgttct       240
     tgagtagcgc agatggttag aggagctgga gttcgtggtc gtggtcgcgg tcgtggtcgc       300
     ggtaggggac gagtcctcga gggtaccggc gagagtgatg gccacagtgc cacagttgag       360
     cagagtgtgg gttcgcagcc tgagtttgtg gagcccgggg ttaggaacgg tcttggtgcc       420
     gatatagctg gtgcagccgg agtgggggct ggtggagctg gtgtcggtac cggtgtgcat       480
     gccgttggtg ctgagggccc aggagtgatg ggtgccgcag ccggaggagc ccaggttcca       540
     gaggttggtt tggcgggcct gttgaggcag ttgttggagc ggttaccagg tgtggtacca       600
     gtggaggctc cagttgcgcc acgagtggcg gaggtgcagc agcgggctgc ggttgctgag       660
     gaggttccat cttatttgag gatgatggag cagttgcaga ggattggcac cggttatttt       720
     tctggtggta ctagtcctga ggaggccgac agttggaggt cgcgggttga gcggaacttc       780
     ggttcgagca gatgcccggc ggagtatcgg gtagatctag cagtgcattt tctagagggg       840
     gatgcacatt tgtggtggcg gagtgtgact gccaggagga ggcaggcgga tatgtcttgg       900
     gcagatttcg tggctgagtt taatgccaag tactttccgc aggaggcgct cgaccgtatg       960
     gaggcgcgtt ttcttgagct gacacagggt gagcggtcgg ttcgggagta tgaccgggag      1020
     tttaaccgac tcttggtgta tgcgggtcgg ggcatggagg atgaccaggc ccagatgagg      1080
     aggttcttga ggggacttcg accggatttg agggtgcggt gtagagtgtc gcagtacgcc      1140
     acgaaggcgg cactggtgga gacggctgct gaggtagagg aggaccttca gaggcaggtg      1200
     gtgggagtga gtccagcggt acaaccgaag aagactcagc agcaggtggc acctagcaag      1260
     ggcggcaagc ctgcgcaggg gcagaagagg aagtgggatc atccttccag agctggacag      1320
     ggtggtcgtg caggatgttt ttcttgtggg agccttgacc acaaggtggc ggattgcacg      1380
     cagcgagctg agacgaggga gtgctaccac tgcagggaga ggggacatct caggccgaat      1440
     tgtcctaagc tgcagcggat ggcagtggca gtggtacagc cggcggtgca gcacggagcg      1500
     caggtgcagc agggagtgca gcagttggca catattgcag cggcaccgca gggttacact      1560
     acgcgtgaga taggcggtac cagcaacaga gcgattactg gtatgatttc tgagactcag      1620
     actttgtgaa ttatttctgt tgttttggat atcattgttt tgtgatgaat gttagggttc      1680
     ttagcacatg aggtttgtgt agggacctta ttagtgggcg gtgtagaggc ccatgtgttg      1740
     tttgactctg gagcatcgca ttgcttcatt accccggaga gtgcctcgcg cggcaacatc      1800
     cgtggggatc ctggtgagca gcttggagcc gtcaaggttg ctggagggca gtttctagcg      1860
     gttctgggga gagcgaaggg tgtggatatt cagattgcag gggagtcaat gccagcagat      1920
     ttgattatca gccctgtaga gttgtatgat gttattctgg gaatggattg gttggatcat      1980
     tacagagtac atcttgactg ccaccgtggg agagtttctt ttgagcggcc agagggaagg      2040
     ttggtttatc agggagtgag acctacctca gggagtctcg tcatctcagc agtgcaggca      2100
     gagaaaatga tcgagaaggg ctgcgaggct tacctggtga cgatatctat gccggagtct      2160
     gtggggcagg tagcagtgag cgacattcgg gttgttcagg agttcgagga tgtgtttcaa      2220
     tcgttgcagg gattaccacc atcacggtct gatcctttca cgattgagtt ggaaccaggg      2280
     acagcgccgt tgtctaaggc accctacagg atggctccag cagagatggc agagctaaag      2340
     aagcagctag aggatttgtt gggtaaggga ttcattcgtc ctagtacttc accttgggga      2400
     gcgccggtgt tatttgtgaa gaagaaggac gggagtttcc gcttatgtat tgactaccgg      2460
     gggttgaacc gggtcactgt gaagaacaag taccctttgc caaggatcga tgagttgttg      2520
     gatcagttga ggggtgctac ttgtttctcc aaaatcgatt tgacgtcggg ttatcaccag      2580
     atcccgatag cggaggcaga tgttcgcaag actgctttca ggacgagata tggacatttt      2640
     gagttcgtgg tgatgccttt cgggttgact aatgcacctg cagcgttcat gaggttgatg      2700
     aacagcgtgt tccaggagtt tttggatgag tttgtgatca tctttattga tgacattctg      2760
     gtgtattcta agagtcctga ggagcatgag gtacatctga ggagagtgat ggagaagctg      2820
     cgggagcaga agttgttcgc taagttgagt aagtgcagtt tctggcagag agagatgggt      2880
     tttctgggtc acattgtttc tgcagaggga gtttcagtgg atccagagaa gattgaggct      2940
     atcagagatt ggcctagacc gacgaatgcc actgagatca ggagttttct tgggttggca      3000
     gggtattaca ggaggttcgt caaggggttt gcgagtatgg cacagccgat gactaagctg      3060
     acagggaagg atgttccttt tgtgtggtca ccggagtgcg aggagggttt cgtgagcctg      3120
     aaggagatgt tgacgagtac accagtgtta gcattgccag agcatggaga gccttacatg      3180
     gtgtatactg atgcctcgag agttggtttg ggttgtgttc taatgcagcg tgggaaggtt      3240
     attgcctatg catcacggca gttgaggaag catgagggca actatcctac tcacgatttg      3300
     gagatggctg cagtaatctt tgccttgaaa atttggaggt cttatcttta tggcgggaaa      3360
     gtgcaggtgt tcacggatca taagagtttg aagtatatct tcactcagcc agagctgaac      3420
     ctgaggcaga ggcgatggat ggagttggtg gctgattatg atctggagat agcttaccat      3480
     cccggtaagg ctaatgtggt tgcagacgcg ttgagccgta agcgcgtggg cgcggctcca      3540
     gggcagagtg ttgaggcctt ggtgagtgag attggtgctt tgcggttgtg tgctgtggca      3600
     cgagagccat tgggattgga agctgtggat cgagcagatc ttctgactag agttcggttg      3660
     gctcaggaga aggatgaggg gttgattgcg gcttctaagg cagagggctc tgagtatcag      3720
     tttgcagcta atgggactat ccttgtgcat gggcgagttt gtgtgcctaa ggatgaggag      3780
     ttgcgacggg agatcttgag tgaggctcat gcgagcatgt tttccattca tccaggagcg      3840
     actaagatgt accgagacct caagcggtac tatcagtggg tcgggatgaa gagggatgta      3900
     gctaattggg ttgcagagtg cgatgtttgc cagttagtta aggctgagca tcaggtgcca      3960
     ggtggcatgt tgcagagttt acccattcct gagtggaagt gggattttat cacgatggat      4020
     tttgtggttg ggttgcctgt gtcgcgaacc aaagatgcta tttgggtgat cgtggaccgt      4080
     ctgactaagt cagcacattt tctggccatc agaaaaaccg atggagcggc ggtgttggct      4140
     aagaaatatg tgagcgagat cgtgaagttg catggagtac ctgtgagtat tgtgtcagac      4200
     agggattcca agtttacttc tgcattttgg agagcctttc aggcagagat gggtactaag      4260
     gtgcagatga gcacggctta tcatccacag acagatgggc aatctgagag gactattcag      4320
     acgcttgagg atatgttgcg gatgtgtgtc ttggattggg gaggtcattg ggcggatcac      4380
     ttgagtctgg tagagtttgc ttataacaat agctatcagg cgagtattgg gatggctcct      4440
     tttgaagcgt tgtacgggag gccatgcagg acaccgttat gctggaccca agtgggggag      4500
     aggagcatat atggtgcaga ttatgttcag gagaccacgg agaggatccg ggttcttaag      4560
     ctgaacatga aggaagctca ggatcgacag cggagttatg ctgacaagag gaggagagag      4620
     cttgagtttg aggttgggga cagagtgtat cttaagatgg ccatgttgcg aggtccgaac      4680
     aggtctatct cagagactaa gttgagtccg aggtacatgg gtccgttcag gattgttgag      4740
     agggtgggac cagtggcata caggttagag ttgcctgatg ttatgcgtgc gtttcacaag      4800
     gtctttcatg tgtcgatgct gaggaagtgt cttcacaagg atgatgaggt gttggctaag      4860
     attccagagg atcttcagcc caacatgact ttggaggcga gaccagtgag ggttctcgag      4920
     aggaggatca aggaacttcg gcggaagaag attcctttga tcaaagtcct gtgggactgc      4980
     gatggtgtga cagaggagac ttgggagcca gaggcgagga tgaaggcaag gttcaagaag      5040
     tggttcgaga agcaggttgc tgcatgagtt tgcctttcct tggtttccag tttcagtgtt      5100
     gttgagtttt tgagcttttg agttgttgtt cttatttctc tttcatttgt attttcgttt      5160
     ggagttgtaa cgatcatgac agttgatgat taataagatg agtatttttt ttcttggatt      5220
     tgacttgagt tgtcttattt aagaatgtgt tgtgcggttt ccaaaaatgg aaagtttcct      5280
     agaaaggact tgtctatttt tggaaagttt gagtaaacaa cctaagagaa aggtgtgttt      5340
     acgagatggc cgggagttgg tcataaggat gttctcgagg ggatatgatg gatggtgagg      5400
     catagaggtg tcttacgcga atccatgaga gagtctggag atatgctcgg aagcgtttag      5460
     tattgttgct cgagggacat gagggtccca acgactcgtg aggagcgggg tatgctcctg      5520
     aggtaccggt aactcgaggg acatggtgtc tttagagtac gaggggtacg gtggcttcgg      5580
     gtgacgatcc gagagcacgc tttagggtga cgacccgaga gcgagttttg tggtattatt      5640
     ttctccaagt gtcgtaactc gatgactttg tggctgagag tgagccgaca caactcaggg      5700
     tttgactttg agtggggaag ataatatgtg tgatacccga gataccgtag gccgaggcct      5760
     gagagtgacg gtttatgctc gaagattgcg gtctgagagt ggagagtgag ttgtgagcaa      5820
     caatgactag taaatcgtga gtatatcgac tggatagaga gacctagagg gggtctggtt      5880
     ggagggagtg cggactgtag tgatggttgc acggagttcc tcggagtgga agggtgaagc      5940
     tagattcgag gacgaatcta tgttagtggg ggagaat                               5977
//
ID   SIMPLEGUY1  repbase; DNA   ; ATH   ; 1069 BP.
XX
AC   .
XX
DT   08-FEB-1999 (Rel. 3.1, Created)
DT   08-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   SIMPLEGUY1 is a putative non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TIR; 3 bp-long target-site duplication; minisatellite;
KW   SIMPLEGUY1.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1069
RA   Kapitonov V., Jurka J.;
RT   "SIMPLEGUY1.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   SIMPLEGUY1 is a putative non-autonomous DNA transposon.
CC   Its individual copies are ~95% identical to the consensus
CC   sequence. They are bordered by 3 bp-long target site duplications.
CC   Putative target site is TAA.
CC   It has 15 bp-long perfect terminal inverted repeat.
CC   Internal portion of SIMPLEGUY1 includes 27 bp-long minisatellite;
CC   the number of the satellite monomers is a variable.
CC   Related minisatellite is present also in the Brasica genome
CC   (EST sequence AT000870).
CC   The minisatellite monomer codes 9 aa-long protein sequence
CC   similar to the FMRFamide-related neuropeptide.
XX
SQ   Sequence 1069 BP; 318 A; 157 C; 198 G; 395 T; 1 others;
     taaggccctg ttcgtttctc catttgacag atccatccaa ctgatccatt qcaacatgtc        60
     catctagatg attcattcga ctcttgttcg tttcattttt agtcggttca tttgactgga       120
     ccatccgaat gagatgttgt tcgtttgctt atctctatct ccatccaaat gatttgtaat       180
     aatacaaata cctaaaatac ccatgctttc atctaattat atttttatta ttacttgtaa       240
     acatattaat tttaattctt aatctaaaat atatttaaaa gtaaataaat tttaaataat       300
     agttttttac atttataaat ttattttacg gttttggcgg gaaaacgtga ttttacggtt       360
     ttgacgggaa aactcgattt tacggttttg gcggaaaaca aaattttacg tttttggcgg       420
     gaaaacgtga tttttacggt tttggcggga aaacgtgatt ttacggtttt ggcgggaaaa       480
     cgtgatttta cggtttcggc gggaaaacgt gatttttacg gttttggcgg gaaaacgtga       540
     ttttgcggtt ttggcgggaa aacacgattt tacgggtttg ccgggaaaac gtgattttgc       600
     ggttttggcg ggaaaacgga attttacggt ttttgcggga aaaaatgatt ttgcggtttt       660
     ggcgggaaaa cgtaatttta cggttttagc gggaaaacgg aattttacgg ttttatcgga       720
     aaattttgat tttgcggttt tagcggaaaa tttaattttt atttttttaa aaaataattg       780
     taaaataaga tttaagtcta tttgttttta tctaaaaata catctaaata atcaattgaa       840
     ataattaggg tatttttgtc atttgttatt tttgactgaa tcatctccat ccaaatgatc       900
     caatttagtt cagccaaatg agtttcaaaa tttagcctaa attttcaaac tcatccaaat       960
     aattcatttg gatggatcat ctgaatgaac cgtttttggc accaaacgaa catcaaaact      1020
     catctccatc cagatgatcc atctgactga tgaaacgaac agggcctaa                  1069
//
ID   ATLANTYS3I  repbase; DNA   ; ATH   ; 9668 BP.
XX
AC   AC006586;
XX
DT   04-MAR-2002 (Rel. 6.3, Created)
DT   04-MAR-2002 (Rel. 6.3, Last updated, Version 1)
XX
DE   ATLANTYS3I is an internal portion of the ATLANTYS3 endogenous
DE   retrovirus - a molecular fossil.
XX
KW   gag; Gypsy-like endogenous retrovirus; ATLANTYS superfamily; RT;
KW   RNase H; integrase; ATLANTYS3LTR; ATLANTYS3I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-9668
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular fossil of the ATLANTYS3 family of endogenous
RT   retroviruses.";
RL   Repbase Reports 2(2), 5-5 (2002).
XX
DR   GenBank; AC006586; Positions   31838   21169.
XX
CC   ATLANTYS3I is an internal portion of the ATLANTYS3 endogenous
CC   retrovirus. There are several copies of ATLANTYS3I in the genome;
CC   they are over 90% identical to each other. Long terminal
CC   repeats are deposited in Repbase Update as ATLANTYS3LTR
CC   ATLANTYS3I is flanked by 98% identical LTRs and has 5-bp TSD.
CC   Like other members of the ATLANTYS superfamily, ATLANTYS3I
CC   encodes s hypotetical protein in reverse orientation, instead
CC   of env.
XX
SQ   Sequence 9668 BP; 2808 A; 2463 C; 2199 G; 2198 T; 0 others;
     attggcgcgc caggtagggg aatataaaca aattttctct acgctccttt aatcaaagca        60
     agcatggttc aaatcatcat cgaccccgtc attcctccag tcaacgatga tggcacggag       120
     tcaagtctcc tcaatggagg agatccacca tctactgtgg aagtagcggc caaagcgacc       180
     gcgaatcaac cggcacacgg ggcgacccct atagacccac catctttctc cttggaggac       240
     ctcaaagcca tcctcacaac cgtgacgaaa gatctttctg aatcggtcat ggagactaat       300
     cgccgactcg acgagctggc taaaggaatc tcccaacgtc cgagctccga agtgaccctg       360
     ccgagaatca tccatccgcg cgggcttagc ttcgacctca cggatgcaca atccaatagg       420
     atgaaaccca ggttcccagg atcactccat cctatcaacc aagaaggcag accgcctatg       480
     cctccgttga cgtcgccggg tcatgtctcc agatccgcaa ccttagatca cgatggaaag       540
     ttagatgata tctatttgaa actccgagaa atcggatccc aagtccatag agccagcagt       600
     ttggccccag aaatcgaccg aatgatcgaa gaaacccaga agactccttt cacggatatc       660
     gggttacacg tacgagaatc cctcaagtga agcttaggat tccaatctac aagggtggaa       720
     gcgatcctaa acaatacatg acatccttca tgacaacagt cgccaaagct cactttttgg       780
     acgaaatccg agatatcggc tgctgccagc tcttcgtcga gggcctcttc ggaaacgctt       840
     taacctggtt ttccagatta gaggcaaact caattgacaa cttcacccag ttgtcaactg       900
     ccttcttgaa acaatatcgg gtatttattc aaccaggtgc ctctagttcc gacctttgga       960
     gcatgactca agaaaatggc gaaacactga acgactatct aggtcgtttc aaagaaatac      1020
     tgtctagagt taccatcaca gatgaagccg cggtggctgc ttttaggaag ggactactcc      1080
     aaggatcccc gctgagaaaa gacctcgcaa taagagaacc gcgatatctc gacgacgccc      1140
     tgcatagagc ttcatgatat gctttcctca aagaggaaga cgcaaagttg gcatgcaaat      1200
     ctcaaccgcc aaaggccaag gaaaaagagc ggggagatta tcaagaaccg cgtcaacact      1260
     atgatccaaa ggcgaacaag cgaggaacga tctttgccgc agtcgattcg gaagaccgac      1320
     ctcaacagcc ggccaaaccg aatggctcga agaactcgta ctgtcgtttc accagttcgg      1380
     aggacattcc acaaaagagt gtaaacatct tttgaacatc ctcctcggga agtacaaatc      1440
     tggagaagta gaggcggtct accatcccaa gaatgggaaa aataaacgca agagcgactc      1500
     caagcagtcc caggctgagc caacgcatga agagccacac gtggatcacc aattgctcct      1560
     agaggacgat aatgtagaag aagtgagggt cccggagaac gaactccccg gtcccccaaa      1620
     aagatggaga gaacagcaac cgcaacgagc tccgaaccat ccccgcggaa ggatttccat      1680
     gattatggcc ggactatctg acgatgaaga ttcagtctcg gctttgaaga agcgagctcg      1740
     acaagtatgc agcgttaggg tcgccccaga agccgagcca ttaagccagg aacccatcat      1800
     ctttacttcg gaagatgcaa gtgggattcg gcatcctcac aacgacgcat tggtcgtcaa      1860
     actggtaatg gaggacttcg acgtagaacg agtcctaatc gatatcggca gctcggtcaa      1920
     cctgatgttc ttgaagaccc ttttaaaaat gggaatctct tagagcaaaa taatgcctaa      1980
     gatccgccca ccgataagat acgacggcga agcaaaaatg tcaataggag agataaaact      2040
     ccaggtccaa gtgggcggca tcacgcaaaa aaacaagttc gtcgtcatcg actcggaacc      2100
     aatctacaat gccatcctgg gaagtccttg gatctactca atgaaggcaa ttccctcaac      2160
     ataccacctt tgcctaaagt tcccgataaa cacaggaatc ttcaccctgt acggtaacca      2220
     gaaggtctca cagacgtgtt acgtaatcga gaagaagcag cgaaagaagg atttccactg      2280
     ggacgacaaa tgcgaaaacg ccttccaaga gctcaaatcc tacctcatga gtggggcgat      2340
     cttagccaaa cctgaggtca gagaaaccct gtatctctac gtctcggtgt caagttcggc      2400
     ggtgagcgga gtactggtaa gagatgatcg cggtaacgaa aaacctatct tctacaccag      2460
     taaagctctg aatgatgccg agactaggta tccgaccttt taaaagctgg cattagcggt      2520
     gataaaggca gctcggaaac tccgacctta cttccagtca cattccatag tagtcttcac      2580
     tgaccaccca ctacgcatag tgctccacag cctaaactag tctggacgaa ttgcaaaatg      2640
     ggcaatcgaa ctaagtgaat atgacgtgga atatcgatct cgcccgagcc tcaaatctca      2700
     ggtcctagct gacttcatga ccgaaatgtc cccggatgtg attgacgtta ccctagacga      2760
     aaactggaca ctttactcgg atggctcctc atcattacaa ggctccggtc ttggaatttt      2820
     acttcagtca ccaaccggag aaatcctcga acagtcactt tggctccagt ttaaagcatc      2880
     gagtaacgaa gcggaatacg aagcacttct tgcaggactt cgactcgcta aaggactcgg      2940
     agctagacag atcaaagctt tttgcgactc tcaactcgta gtcagtcagt tcagcgggga      3000
     attcgaagcc aagaacgaaa ggatgcgggc ttatctctca ctggtccacg aactttccag      3060
     ccagttccac cagttcgccc tggtcaaaat tcctcgaaac gacaactcag cagcagacgc      3120
     actagccgca ctggcctcaa gcgccaaccc cgatttaagg cgaacaatcc ctgtcgaaag      3180
     catagcaaaa ccgagcatcg agccaccaaa ttcgacctgc gtgatcgtag accccgtaac      3240
     ggccatggac atagacggca acgcaatcaa cgcgccgggt atagaagagg atccggaacc      3300
     atccgattgg tgactcccca tcaaaatgta cattgccgac ggcatagttc caacagatcg      3360
     atgggaaact cgccgactaa aaaccaaagc ggcgaactac atgatgctag atggcgaact      3420
     ttacagacga agtgcgacaa aagctttcct cacttgcgtg gatcaaaaag aagccctgac      3480
     actcatgaag gagacgcatc acggagacgg tggtaatcat tcaggcgggc gagatctctg      3540
     ccttaaaatc aaaaaagatg gtcattactg gcccactatg ctgcggattg cgaggtctac      3600
     gcggcaaagt gcgagccgtg tcagaggcac ggcccgatga agaacgtccc tcccgagata      3660
     ctgtgttcgg tcacggtgcc atatccattc atgcgatggg ccatggatat cgtgggaccg      3720
     atgcctcctt ccggatccaa aagatttctg ttagtcctga ctgattactt caccaaatgg      3780
     gtcgaggcac aggcgtacca caaggtcaag tcacgcgatg ttgtcgcatt catctggaag      3840
     aacattattt gccggcacgg tcttccttat gagatcgtta cagataatgg gaagcagttt      3900
     gtctcgctca ttactagaaa cttcctcgcc aaatggaaca ttcgcatgag caactcgact      3960
     ccaagatacc cacaagggaa tggtcaagcc gaagccacaa acaaaatgat catagctggg      4020
     attaagaaaa ggcttggtcc taaaaagggg aactgggcaa acgagctgga tggcgtgctc      4080
     tggtcgtaca gaactacgcc tcggcgacct acatcattat cccctttctc cctggcttac      4140
     ggcatcgagg caatggctcc aaacgaagcc ggagttccga ctttacggag aagcatgatg      4200
     tcaaacgacc atgaactgaa cgatcagctt ttgggcgacc acaatgattt tgcctaagaa      4260
     cttcacgatc aagccgccat ccggatccag aattaccaga acgcagcggc gaaatactat      4320
     aatcgaaaca tccgagaacg tcgcttcaac gtaggtgacc tcgtgcttca ggaagtttac      4380
     agtaacaccg aagagaagaa cgccggaaag ctcggagctc gatgggaagg accttacttg      4440
     atctccaagg tacttcatcc aggagtctat ctgctgaaga ccatgaagct gaaagaggtg      4500
     gaaaatccgt ggaatgcagc ccacctcaaa aggtactaca ctaggctagg agttagctaa      4560
     gtagagctca aaaaaaaaaa aaaaaaaaaa aaagaacaat atactatgta tgcagatcgt      4620
     ctgtcgatct cctttatgta atacaaacta cgaatggctt gatcccttca tcgggtacgt      4680
     aagcagtcct tcgcaaggat gcagctataa tactttataa aattaaagtt tgcattctca      4740
     atacggagtt cgctttaaga tctgttatgt caactctcgg cgccctggcc aggtgttcga      4800
     tgcgcgtctc acatggatgc agtggtgaaa taatccacgc cctattagaa acataagtct      4860
     attggaattg gctctgtatc aatggaattt ttctaatagg gatagccgag accagttttc      4920
     tcgcacttaa gctctggttc ggacagaaat ataagccgaa ccctgtattt cgcgatctgc      4980
     cgaacaaatg ctctacgggg agtaagccga gcccagcatc tcgccctcca aataatatgc      5040
     tgagtccgtc tcacttattc ttgaaacaga gcccagaact ccctctttaa aacatgcata      5100
     ggcctgctgg acataagccg agagacgtct cgcgtccagc acacgctgaa tattgtctct      5160
     caaaagccga gcccagtctc gcacctaaca tctaatccga acttagacag aaaaaattgc      5220
     gttactccaa aaagaactca aaagccgacc tcaaaggtcg cacgggaaac aagccaattc      5280
     ataaaagttg tattatatta atcaacgacc aaacaagatc gggagctatt acaaagaata      5340
     aattagagaa ttaaacaagg tcggcagcca taacaaaggc gtttattcga aaacaaaaag      5400
     acaaaaggaa aaacgatctg aaaagccact aaggatcatc ttctatcatc ctggcatcca      5460
     gcagagctac cggccagata ggacatcaga tcgccctgtc agaaacaacg cgattatcct      5520
     gaaggaggcg atctggcatg ggccacatta gctgcagacc aaccttctcc caatcctctg      5580
     agcgaatctc cagtgcccta atcgtctgtt cgacctcatc cagacgaatg acgacccttc      5640
     ttcgcttctt cttcagctta gcaatcagag tttcgagctc ctcgagacga aaatccactc      5700
     ttcgtttctt ggttcggaag tactacagct cgcggcattg atcctgatgt agaaatctga      5760
     cctgggaaac caaagcaacg aaaatcttaa aaatcatccc aaaatcgaag acacgaatca      5820
     aagtaatcct tacctggttg acgaagttct gacactcgtt ggtatcagca tcagtagcac      5880
     ctggcccaag atagaataga gaaggcgtcc tgggaatgaa gtccccatca gcaatgattg      5940
     ttggattctt ctcctttgag gcggcagcag catctcgagc acaatcctca cagtacgaca      6000
     aaatgatgtc cggcatcgga gccagaagct gaaaaccatt cttgagccaa tggcgaggat      6060
     gcgactccag catagccatt tttcgggcaa tatcagactt tcgttcatca taatacctca      6120
     acatctcgcg gtattcctta tgccttgatt caacacatga taaacacccc tcagcttcac      6180
     gtcttgcctc cgagctcgcc tggaatagaa gagtccaggg aactcgaagg ttattgaaga      6240
     acggcatccc acgttcaatc gcctcagcgt tcgagaaagt cggaacattt ttgccaacag      6300
     aagaagaaga tccagcactc tccatcttgc aaacaaaagg aggaaaggcc gataaaacaa      6360
     ttggtgatca acagagaagt atttataggg gcaaatacag aaatcgaatt gggaatttgc      6420
     ttaaatgcgg tctggaaatt ctcgttttcc tttcccaaga aagactaata tttgcatttt      6480
     ctccaaaact gggaaaatgg aaatttactt gattaacagg ttgacttccc ctaatttcct      6540
     tttccaaaaa tgccaaagct cataaatgga aaacatagag aaaatactat tttgcctcgg      6600
     aaacaggaaa aatggaaaat catcgaaaat agagtttaaa attaaaatcc gccccgaaag      6660
     tgggtccacg gttaaacatg agttttgaga tccccccgaa agttgggtcc acgatcaatg      6720
     tatcaaaata aattacaagg acgaccgatt caggtcgtct ggttcgtttc ttcaacgctt      6780
     acacgtcgaa tatcgcttcc gctaacgagg tcgacatttg agctgtgatg gtccgccaca      6840
     ggagcaattt gggaggcttg cctcaaaaaa ccgagctgat ccggggacat gttcaggtca      6900
     tcatccccga gctcgatgac gttcaaggca ttaacttcgt cagtcgccct tttggttaac      6960
     tccttaaggc cgttgagttc agaatgccca ctatctcctc agcgcctttg gcttgattct      7020
     caacatccac ctttggcccg acaaggtcct cttgctcctt gagataagcc ttcactttat      7080
     caagacgagc ttgggctttc tttgtagtac gggcgacctt agcaactagg tcattccgca      7140
     gcctgttgca ttccttctcc ccgtgctctt tcacagcaac caacgcgacc tgaagatcgc      7200
     tgatctcttt ctgaagatca gcttctcgac cattgagcct cttgacctcg tcgttcaacg      7260
     agctcatttc cgccttatga atctcggcag catccctcaa tgcagccatt tccttcatgt      7320
     ctttggcgta gatggctttg gcctggtctg cgcatttctt caggttatcg aaggcctctc      7380
     tgtcggcgag cttcagcttc aacttgcgat cgtatgtcgc aatcagatca ttggccaggg      7440
     cggcggtctg gaaaaagagt tacggttaaa gctaaaatac aaagatatta agccacagga      7500
     agacatgtaa ctagcacgta cctcaagtga tgatctggca aacttttgat atccctcttt      7560
     cagaaccagg tcgtcaagat tagggaaatc cttcgtccca gggagcatca agttacgcca      7620
     aagatgactg gcggcctcct gatctctcac aaggaatttc gcaccagaat acttaaacga      7680
     aaactggtca gaattaagag tttcacctcg cgacaggcga aacgtcttcg gagcagcaac      7740
     ttcatctaaa ccggcttcag aggccgacct cttcttggat tggttagcca ctcctttccc      7800
     tttctcttca cgggacctcc tggaagtctc gagctcctca acggtttcat ccttgtcttg      7860
     atcaacgata actaggcccg tgttgacctc ttcgcctgct ggcacggcgg cataaacggc      7920
     gatggagcgg tcgctggtaa cattttgaat ttcaggctcg acgacctgaa cggattgact      7980
     ttgatcgcac tcggcgatct cttgagctgg aacgacgtcg gccccttcaa gacgcgtcct      8040
     atcttgagaa tctggattga ccgtctcatg ggagacctga tcaacaccgg aagggccagc      8100
     actaacggga ggattcgacg tagccgcctc tccgtctaga ggatgagtct cctcttcgat      8160
     gggagctgag gaggcggcat attcaaaagc ccggcagcaa agctaataaa gggcttcctg      8220
     accttcccct ttatcctgtt gacgcgcgac ctcgtgatgt ctttccacgc acgacgttga      8280
     gcttggaaga ttgcctctaa aactccctcg aactccatgg gaaactccgg gctaggcctg      8340
     taccgatctg caacaaaaga aaaggctatg agaatctaat cgggatcgac atgtctttac      8400
     cctatctatt taaaagaagt ctaccaggaa actccgtcca catccttttc ctccacgaga      8460
     acggacgctc atacgactcg aggtcgaccc tgatgtagaa gtaatattct tcccagttct      8520
     tgaaattact gactttggga ccgggaagaa agttgtactt tgggcggtta ttcaccaccc      8580
     aatagccagg cgacctgata gctttcaacg ttgtcatttc ctcgaaacaa cgaacgttta      8640
     ccagataacc ttcttcagcg ccgaaggtca gagcaacaac gaaattgcag atcgccaccg      8700
     gagtgagctg ggagaacgcc atacgacggc gatttagaaa ggagatgatc agagacggaa      8760
     tgggaaacca aagatgacac tgtctgaagt aggcttcata catacagaca tatcctcgag      8820
     ggggattcca aggacgctca tcttctccga gaatcatgta agtgagtggg cgatctccgg      8880
     agccgcacaa ggtaaatact tccgcgactg actcggttgt tgaaagggtc ttttttacgg      8940
     tgatctcggt gttccaatga acaattgggt cgaggtcaaa ttcgacataa tcctcatgaa      9000
     gtaatctcgc attaacttca gcctctgtat actgcggatg cgtgttgtaa gcatcctcca      9060
     ggtcgatgag tgggtcgaac tgagctaaaa aatccaccga atcttcagga gcagcgggat      9120
     gtccaccgga accttcccga tctggctcat caagcaacgt cggaatttcg atccgattcg      9180
     atcgactaga ttgagcttcg tcacttggat tcccggttaa ccgagagttt cggcgaacta      9240
     acgacgcttc gctctcggag gaagaagagg acggagaaac aagaacagcc ttacccattg      9300
     ccggaaaaat cgataaagaa tcgagaatac aaaataattc gtagaggaga gagcgaaagc      9360
     tacctttgat tcttcttgca agcggcagaa aatgatttcc cgagggtttg gtcgaatata      9420
     aatagagacg aatgggcggc aagcctacga ggtcatcatt aaacctacgg gacgcttcgg      9480
     ttcttgagct tcacgcgcgc gtacagatgc gacgatttga cacgtgtcaa atacgttcga      9540
     aatacgaatc gattcggaga tctaatgatt aattcacgtc ttccaagatt taaatcaaat      9600
     attcaatttc taagttcgga aatttcgaat taggcaactc ggattctccg gactgggggg      9660
     ggactaat                                                               9668
//
ID   ATR2        repbase; DNA   ; ATH   ; 2242 BP.
XX
AC   .
XX
DT   24-FEB-1999 (Rel. 3.2, Created)
DT   24-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   An AT-rich repetitive sequence - a consensus.
XX
KW   ATR1; ATR2; ATR3.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2242
RA   Kapitonov V., Jurka J.;
RT   "ATR2.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   Individual copies of ATR2 are ~94% identical to the ATR2 consensus
CC   sequence. The nature of the repeat is unknown. Target sites are not
CC   well determined since ATR2 copies are flanked by (AT)-rich sequences.
CC   An existence of several ATR2 subfamilies determined by multiple
CC   diagnostic positions indicates that ATR2 can be a retroelement.
CC   At the same time, multiple copies of ATR2 have internal deletions
CC   typical for DNA transposons.
CC   ATR2 shares common structural features with ATR1 and ATR3 elements;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
SQ   Sequence 2242 BP; 923 A; 276 C; 213 G; 823 T; 7 others;
     atctatatta ttaattggga agcattgtgt gaactacaac attgtaaggg tagtttaaaa        60
     ctaactaaat gaatttttgc atgggtaatt tagtaaatta acaactacta caactaaata       120
     aatatcttgg attttgttct ttwaaaaaaa cgaatttaaa atcaataaat taataactac       180
     ccaatatttt cggaaatcat ttaaaaacgt ttccataaca tatcaggcta ttttaattcg       240
     aattgtatat atgtaaactt atttattttg gtaatatgtt attagataat tcggaaactt       300
     caatctaatt taataacaaa ttatcattta gtttagattt tatacaattt ccttaacaaa       360
     actatgttaa ttgtttctga ttagtacaca taaaaaataa ttttaaatta tgatttagca       420
     tattcaaaag agaatttttg gattttagat ttgtaattat ctagaaaata gtttcagtat       480
     agattaaaat atttaacatt ttaattagaa tttaaatgat ataaactttt aaagtatttt       540
     tttaaaacag gtaattttca ttattttaaa aatatatcac taagctaaat ttgaattata       600
     taaaagaaaa tatattttta aacgtattat aatagttaca agcttttgga atattcattc       660
     ttctagattc gattatttct ttttttttaa acagtaaaac aaagtttaaa taccaatgtt       720
     taaaattttt aatgcaaata ttcaaaatga gaaaatattg attcacacca atatyttatt       780
     tttttctttg aaatttgaat gacttttttt tggaacaaac agtaatatga tttttttgac       840
     agatcattaa ttgtattcga acaataataa ctaccatatt tgcgataatg cataaggata       900
     agtttaattt taaaaaatac caaaatcgtt gagatcatag taaattttag ctttaaaaaa       960
     aaatattttc gtcatcctaa atttaaaata tgtaattcag attagttttt ttcagtaaag      1020
     ctaagattga atccaaatta aaatctaatt ttgcgtacaa tctatctctt ataattataa      1080
     atgttatgca tacattcaca ttgcctcaca atcaatctag aatatcgatt ctttaaaaaa      1140
     aatagataga gattcataag taaattactt catgttctaa tgatgtttat ctcctaattt      1200
     tactatccat ttatgcgtat tcttatggat ttttctttca gggtcaacac tagattacaa      1260
     gaaactagcc gggtgttggt caatattata ccacanataa aatcatggaa ttaacaatca      1320
     aaatatagtt atacaatctt aaacaataaa caaaacaaat ataacttaat ttaatttttt      1380
     atttttaact aaaatcaaca aatttatyag tttataaaaa acaaaataaa aattagcacg      1440
     tggtacccta cgggtaaatc actacgattt catgaggttg caatatcaat ttatacaaat      1500
     tttgactttt aaaatatact ttatacaatt attgaaaggt atacactaaa aatcggtttt      1560
     atatactaca atatcataaa tttataaatc acaaattatt tttaaatata ttaatccaag      1620
     atgtaccaca tgtcaatccc tcgatttttt taatatatta caataacaat atttaaaaat      1680
     aacaaaataa tatttaattt tacggaatga agttatatgg tggaacgagt ttgggttgat      1740
     attaatacgg gacgataatc tacgagtgaa atcttagaat taacaattat aacacaatta      1800
     tacaatctta aacactaaac aaaataaaca atatttacaa aacaactata acttaaaatt      1860
     ygaattttta gttacaaaaa aatcgaccaa cggtgtaccg cggagtaaat tttacattat      1920
     atcatctaat tgatcaaatt tcaaacaaaa acaattaatt tatatataca tcaaactaac      1980
     aaaaatacac agattttcca aatatctcta tattattccg caaatcgaaa caaatctaac      2040
     aatctattta ctatgcaaaa tacaaataaa atataaataa tataaattaa taaaaaaaat      2100
     tagctattgt atcataaata acactataca cttttctatg cacattataa tttatacact      2160
     ayaatatctt tcactaaaaa tgtattccaa tayatttctt aaaatatgaa accccgcacg      2220
     tatgtgcggg tcagaatcta gt                                               2242
//
ID   ATLINE1_6   repbase; DNA   ; ATH   ; 5525 BP.
XX
AC   AL161499; AC007047;
XX
DT   27-2001 (Rel. 6.11, Created)
DT   27-2001 (Rel. 6.11, Last updated, Version 1)
XX
DE   ATLINE1_6, non-LTR retrotransposon - a fossil.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; ORF2; ORF1; ATLINE1_6; L1 superfamily;
KW   poly(A) tail.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5525
RA   Kapitonov V.V., Jurka J.;
RT   "ATLINE1_6, a family of non-LTR retrotransposons.";
RL   Repbase Reports 1(4), 15-15 (2001).
XX
DR   GenBank; AL161499; Positions   34318   39842.
XX
CC   ATLINE1_6 belongs to the L1 superfamily of non-LTR retrotransposons.
CC   It is a one-copy family; there are no other genomic retroelements
CC   that are more than 75% identical to ATLINE1_6.
CC   ATLINE1_6 has been inserted in the A. thaliana genome relatively
CC   recently, a few millions of years ago. It is flanked by a perfect
CC   15-bp TSD.
CC   Two proteins, ATLINE1_6p1 and ATLINE1_6p2, are encoded by ORF1
CC   (position 604-1416) and ORF2 (position 1537-5480, conceptual
CC   translation), respectively.
CC   ATLINE1_6p1 (271 aa):
CC   MGRLTNPSVQRLWSMFPFLSNRCNLRGKALGSDLGKGCFQFKFDYEEDLLKVLDNRPYHYDQWMVILQRW
CC   EPIISESFPCKIPFWIELQGLPKHFWQPEMLKTIGEELGEILDMEITSSAAKLRVLVDGLQPLTKETIVD
CC   FRDGSETTVFLVYKNLKNHCHHCFRLSHETKLCPGLTESRGKDSVSVQPAVSQDSRGGSRNYYTPKDNFT
CC   APRLSHHDCERTHYSQEVSNRQRNSHPSSPVLSNHFSADRGRTQRERRGPLVEVTLWQFLR
CC   Presumably ORF1 is incomplete because of a ~1-kb deletion that
CC   has happened after insertion of the retrotransposon in the genome.
CC   ORF2 is saturated by 4 false stop codons and one short indel; they
CC   are marked by X in the next protein sequences.
CC   ATLINE1_6p2 (1322 aa):
CC   MTVQRIKEIRKKIFPDLLFLMETKNSSETVLQSLQWLDYPSHHLVPPESPAAGGLGLFWKSSVEVEIIHS
CC   SLHYIDTKIKAKGRTFYSTFLYGEPDRTKRLQIWNALQELSSSREGPWFITGDFNDIVNSAEKSGGPDRP
CC   EGSFTDLRSFMSSCDLYDLKHTGNFLSWRGRRHSHLVRCRLDRAMANSDWIIAYPSGRSEYLRFEGSDHR
CC   PLVTSFDHVQKKTKNIFRYDRTLKDNPEISKLMNETWKSNPSAKVDYRLHLCRAALLNWSKEHHLNSQKE
CC   ILSLRVQLEEALTDDAATQDSVDLLNQNLLLAYRKEETFWKQRSRNLWLALGDKNSCFFHAATNSRRAIN
CC   TISVIENSAGTSVYEDSEIIETISDYFQDIFTSQEGDRTSVVAEALSPCITTDMNNTLISLPTVAEIKQA
CC   CLSIHPDKAPGRDGFSASFFQSNWSTVSEEITAEVQAFFISEILPQKINHTHVRLIPKIPAPQKVSDYRP
CC   IALCSVYYKIIAKLLAKRLQPILHSCISENQSAFVPQRAISDNVLITHEALHYLKNSGALVNCYMAVKTD
CC   MSKAYDRLEWDFVKAALEEMGFHHHFVGWIMXCISTISYSFLLNGQAKGLVVPERGIRQGDPLSPYIFII
CC   CSEVLSRMCLKAQENGSLPGIRVAMGCPRVNHLLFADDTMFFCRVDPKSCLKLKSILHKYELASGQKINQ
CC   AKYSITFSAKTPPAVRERVKQILLIQKEGGQGKYLGLPELFGRKKKDLFTAIVDRIKQRALSWSSRFLSS
CC   AGKLTMLKSVLSTMPTYTMSCFQLPLSLCKRIQSTLTRFWWDSKPDQRKMSWISWQKMTLSFKSGGLGFR
CC   DVQTFNKALLAKLSWRLLQNPSCLLAKLLLGKYCKHSTLLDCKVSNSASHGWRSICLGRDVLSLQLGRLI
CC   GNGLTTPIWRAPWLSLTKSXAPMGPPTEASHLLVVSDLLIAGTTNWNKELIRQLLPVYEKDILLLKPSLL
CC   GAADRWAWLPTSSGLYAANSGYFEALKETASLENPPNHDLVKNFNWRSNIWGLQTSPKTKLYLWXXXALP
CC   VGSNLLLRHISDTAKCPRCEQAESTLHLFFHCSFARRIWDLAPFSIRPNFDGIRSFKEGLVLANTLICLP
CC   PTGIGSGPLFPWLLWTIWTASXSSINAKFWKKKPFTWLSXGQRNGKRPKPPKIFTAGLPRNPLHHRLVTG
CC   DQICYTDVAWLPDCRAGFGWIFKSAQDFQLFAGNSSASDVGSPLIAETLVTLADVRVACESDIKAISFAS
CC   DSQIIVKALNQKLQVKELHGILHDILSLSSSFDACTFTFINREFNHQADALAKRALVCCMEP
CC   ATLINE1_6p2 contains the reverse transcriptase and endonuclease
CC   domains.
XX
SQ   Sequence 5525 BP; 1527 A; 1369 C; 1094 G; 1535 T; 0 others;
     cctctttgtc catgatacat atttagagta tacaccagag agagatttcg ctcccaggca        60
     cgacttccga ggaggacaaa agaagaatgt tcctttcttt taaccagaac tcacccactt       120
     ttggcctcta aaagtagtaa cttccaacgg ttaatagact ggttcggtat gttccggcaa       180
     gtttcctggt tctccggtgg ttttcccctg ctcagaagct ttacacctct cgctgctgga       240
     catactcact cacgtctccc ttaatgaaga cccctcccag gtagccttct gctctccccc       300
     atcttgcttc caactgaaaa ccctgaagaa aactttgtaa ccctgttaaa cctttgtaac       360
     cctggtaaac ctgtttcaaa ccctaaacaa gtctcagcgc atttattgtt tctcaaagaa       420
     atctcttcca acttaacccc acagctatta ctcacccacc tgaagtaata gagaagagaa       480
     tcccctatca ccttaaaggc aaagaagtag ctagaggtta ctcccccccc cccacctcgt       540
     aaaagaatca gagccccgga tctggataca tctgagctaa tcaaagagaa ctccctcact       600
     cttatgggaa gactaactaa cccctccgtc caacgcctct ggtctatgtt tcccttttta       660
     tcaaacagat gtaatctaag aggcaaagcc ttaggctcag acttgggaaa aggctgtttc       720
     cagttcaagt tcgactatga agaggatcta ctgaaagtct tggataacag accttaccat       780
     tatgaccagt ggatggttat tttgcagcgt tgggaaccta ttatctctga gtcattccct       840
     tgtaagatcc ccttctggat agagcttcaa ggacttccca aacacttttg gcaacctgaa       900
     atgctaaaga ccattggaga ggaactaggt gaaatcttag acatggaaat aacctcttct       960
     gcagccaaac tcagagtcct tgtggatgga ctccaacccc tcacaaagga aactattgtg      1020
     gattttcgtg atggtagtga aactacagtc ttcttggtct acaaaaacct caaaaatcac      1080
     tgccaccatt gcttccggct gtctcatgaa actaaactct gtcctggctt aacagagtca      1140
     agaggaaaag actctgtatc tgttcaacca gctgtctcgc aagattctcg aggtggttcc      1200
     agaaactatt acacccctaa agataacttc actgctccca gactgagtca ccacgattgt      1260
     gaaagaactc attattctca ggaagtctcc aacagacagc gaaattccca cccttctagt      1320
     ccagtgctct ccaatcactt ctctgctgat agagggcgca cgcagagaga gaggcgcggt      1380
     ccactagtgg aagttaccct ctggcagttc ctaaggtaag gctccaaagc tttctctaat      1440
     acctgcaaca aagaagacaa aggtggattt tcagaatcca tctcaccctc ttccttaagg      1500
     gtagtaagct ggaactgttg tgggctgggg aatcccatga cagtccagag aatcaaggaa      1560
     atccgtaaaa agattttccc tgacttacta ttcctcatgg agacaaaaaa ttcatctgaa      1620
     acggtcctcc aatctctcca atggcttgat tacccttctc atcatcttgt accgccagaa      1680
     tctccagctg caggaggtct tggtctcttc tggaaatcaa gtgtagaagt ggaaattatt      1740
     cactcttctc tgcattatat tgacactaaa atcaaggcaa aaggaagaac tttctactca      1800
     acttttctct atggtgaacc ggatagaacc aaaagactcc aaatctggaa tgcccttcaa      1860
     gagttgagtt cctctagaga aggcccttgg ttcattactg gagatttcaa tgatattgtc      1920
     aatagtgctg aaaaatctgg aggtcctgat cgcccagaag gctctttcac agacctgaga      1980
     tcctttatgt cttcttgtga tctctatgac ctgaaacata cagggaattt cttatcttgg      2040
     cgaggcagaa gacattccca tcttgtaagg tgcagattag acagggcaat ggccaatagt      2100
     gactggataa tagcctaccc ttcaggacgc agtgaatacc tcagatttga aggctctgat      2160
     caccgtccgc tggttacttc ctttgaccat gtccagaaaa aaaccaagaa tattttcaga      2220
     tatgaccgga ccctgaaaga taatcctgaa atttcaaagc tgatgaatga gacctggaaa      2280
     tctaatccta gtgctaaagt ggattatcga ctacacctgt gtagggctgc tctcttaaac      2340
     tggagtaaag aacatcattt gaacagccaa aaagagatcc tatctctccg ggtccaactg      2400
     gaagaagctc tgacagatga tgctgcaacc caggattctg tggatctcct gaaccaaaat      2460
     ctcttgttgg cttatagaaa agaagagact ttctggaagc aacgaagcag aaatctctgg      2520
     ctggctctcg gggataagaa ttcttgtttc tttcatgctg caacaaacag tcgtcgagca      2580
     atcaatacta tctctgtaat tgaaaactct gcaggcacta gtgtctatga agattctgaa      2640
     atcattgaga ccatatcaga ttacttccag gatattttta cctctcaaga gggagataga      2700
     acttctgtgg tagctgaggc gctttctcct tgcattacta ctgatatgaa caacacactc      2760
     atctctttgc caactgttgc tgagattaaa caggcgtgcc tatcaattca ccctgacaaa      2820
     gccccgggac gtgatggctt ctctgcaagt tttttccaat ctaattggtc tacagttagc      2880
     gaggaaatca ctgctgaggt tcaggccttt ttcatctccg aaatcctgcc acagaaaata      2940
     aatcacacac atgtcaggct cattcccaaa atccctgccc ctcaaaaagt atctgattat      3000
     cgaccaattg ctctctgctc tgtgtactac aagatcatag ctaagctatt agcaaagaga      3060
     cttcagccta ttctacattc ttgtatttct gagaatcaat ctgcttttgt cccccagaga      3120
     gcaatatctg acaatgtact tattacacat gaggctctcc actacttaaa aaactcaggg      3180
     gctctagtta attgctacat ggcagttaaa actgacatga gtaaagccta tgacaggtta      3240
     gagtgggatt ttgtcaaagc tgccctagaa gaaatggggt tccatcatca ctttgtggga      3300
     tggattatgt agtgtatttc tactatttcc tactcattcc tactcaatgg tcaagctaaa      3360
     ggcttggtag ttccagaaag gggaatacgg caaggtgatc cactatctcc ctacattttc      3420
     attatctgca gtgaagttct ctccagaatg tgtctcaaag ctcaagagaa tggtagctta      3480
     cctggtattc gagttgctat gggatgtccc cgtgtgaacc acctcttgtt tgctgatgac      3540
     accatgttct tctgccgcgt ggaccccaag agctgcttaa aactcaaatc aattctccac      3600
     aagtatgaac tggcctcagg acagaaaatt aaccaggcta aatattccat caccttctct      3660
     gccaaaacac cacctgctgt tagggaaaga gtcaaacaga ttctgttgat ccaaaaagaa      3720
     ggcggacagg gcaagtacct gggtctccct gagttgtttg gcagaaagaa gaaagacctg      3780
     ttcacagcca tagtggatcg tattaaacaa agagctctca gttggtcctc aaggttttta      3840
     tcttctgcag gaaaactcac tatgctcaaa tcagtcctct cgactatgcc tacttacaca      3900
     atgtcgtgtt tccaactccc actatctctg tgcaagcgca tccagtctac attgactcgc      3960
     ttctggtggg attcaaaacc tgatcaaaga aaaatgagtt ggatctcttg gcagaaaatg      4020
     acattatctt ttaaaagtgg aggattgggg tttagagatg ttcaaacctt caataaagct      4080
     ctccttgcaa agctctcttg gcgactgcta cagaaccctt catgcctgct agctaagctc      4140
     ctactaggga agtactgcaa acactcaacc cttttggact gtaaggtttc aaattcagct      4200
     tcccatggtt ggagaagcat ctgtctaggc agagatgtcc tcagtttaca gcttggacgt      4260
     cttattggca atggtctaac cacacctatt tggcgagctc cttggctgtc tcttaccaaa      4320
     tcttaagcgc ctatgggtcc tccaactgaa gcgtctcatc ttttagttgt ctctgacctc      4380
     ttaatcgcag ggaccacaaa ctggaataaa gaactcatcc gtcaactttt gccagtttat      4440
     gagaaggata tcctgctcct caaaccaagc cttcttggtg cagcagatcg ctgggcttgg      4500
     ttgcctacaa gctctggcct ttatgcagct aattctgggt attttgaagc cctcaaggag      4560
     actgcctcct tggaaaaccc tcctaaccat gatttagtga aaaatttcaa ttggagatct      4620
     aacatttggg gacttcaaac ttcaccgaaa actaagcttt acctgtgggt tccaaccttc      4680
     tccttaggca tatctctgac acggcaaagt gcccacgatg tgagcaagca gaatcgactc      4740
     tccatctgtt ctttcactgc tcctttgcac gcaggatctg ggatttggct cccttctcaa      4800
     tcagacccaa tttcgatgga atcaggtcat ttaaagaggg acttgtccta gcgaatacct      4860
     taatctgcct tccacccaca ggcatcggct ctggtcctct cttcccttgg ttgttgtgga      4920
     ctatctggac tgccagttga tcttcaataa acgccaagtt ctggaagaag aagccattca      4980
     catggctatc ctgagggcaa aggaatggca agaggcccaa accccccaag atcttcaccg      5040
     ccggtctccc ccggaaccct ctgcatcacc gccttgttac cggtgatcag atctgctaca      5100
     ctgatgttgc ctggcttcct gactgtagag ctggttttgg ctggatcttc aaatctgccc      5160
     aagactttca gctgttcgca ggcaactcta gtgcatctga cgttggctcc ccgctaattg      5220
     ccgaaaccct tgtaactctc gctgatgtta gagttgcgtg tgaatcggac atcaaagcta      5280
     tctctttcgc ttctgactct cagatcattg tcaaagctct caatcagaaa ctccaagtca      5340
     aggagcttca cgggattctc catgatatcc tttctttatc ttcttctttt gatgcatgta      5400
     cctttacctt tatcaatcgt gagtttaatc accaagctga cgctttggcg aagagagctc      5460
     tcgtctgttg tatggaaccc taaattatga agtaaagtca gtttatttgc ccaaaaaaaa      5520
     aaaaa                                                                  5525
//
ID   ATHAT3      repbase; DNA   ; ATH   ; 4184 BP.
XX
AC   AC035249; AC0035249;
XX
DT   29-JAN-2001 (Rel. 6.1, Created)
DT   29-JAN-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   ATHAT3 autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; HAT superfamily;
KW   Autonomous DNA transposon; ATHAT3; ATHATN3; Atac3.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4184
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
RN   [2]
RP   1-4184
RA   Kapitonov V.V., Jurka J.;
RT   "ATHAT3.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
DR   GenBank; AC035249; Positions   92113   96296.
XX
CC   ATHAT3 is a recently active autonomous HAT-like DNA transposon.
CC   There are three copies of ATHAT3 present in the genome.
CC   They are ~96% identical with each other. Only this particular
CC   copy preserved nearly complete transposase, two other
CC   copies harbor only C-terminal portions of the transposase.
CC   ATHAT3 has 11-bp terminal inverted repeats and encodes the
CC   749-aa ATHAT3p transposase. ATHAT3 is flanked by 8-bp target
CC   site duplication.
CC   DNA transposon ATHATN3 is a non-autonomous derivative of ATHAT3.
CC   CDS join(260..356,1205..3350).
XX
FT   CDS           0..0
FT                 /product="ATHAT3p"
FT                 /translation="XAYQHKSQQAGNPNSFVSAVSFFREVKNSTRSEMDS
FT                 SANPNNTESNTKGNEDEGRTRPIDNSKGKRKSDVADDGDSANPCKPKKKL
FT                 QTRSWVWDHFTRKDGDDDQCKCHYYKRFFGCSTKSGTSNLKKHLDCCKHY
FT                 SAWKGRQSQNVINQEGNLQSGKVSKEVFREATNEMLVLGQLPLSFVESVA
FT                 WKHICSKANLYKPHSRRTATRDIILMNVARKASLKDLVSANKRRVSLTTD
FT                 IWTAQATGASYMVITVHFIDEYWRLRKFIIGFKYIADHKGATISRVLLEC
FT                 LTEWGIERIFTITVDNATANTSALRKFQRALQSQRADSLVLNGDFMHMRC
FT                 CAHIINLIVKEGLHKLGNHVEAIRNGVLYVRSSTSRCDSFEQKVVTGKMT
FT                 RGSLPLDVKTRWNSTYLMLTRAIKFKVAFDKMEAEDKLYNDHFLEVVDGE
FT                 KRIGPPTTIDWREVERLVKFLGLFYTATLVVSASSIVCSYKCYGEIVTIE
FT                 KNLLGMTHSYDKELREKAVEMREKFDKYWDGQKNINRMLIIASVFDPRQK
FT                 MEFAKMCFEKLYGVDTSEAKEMYNSVYDVMKAMLKEYTVIFKGPNTQSSQ
FT                 SNPPSSTAARDTFACELAEDSNVEFERMDRSYKEMVNEIRVTDPKDELDI
FT                 YLKAEVENPKTLPGMEWDVLSWWRLNSQKYPVLSEIARDVLAMQVSSVAS
FT                 ESAFSTSGRLLEPSRSCLTHYMVETLVCLEQWLKSEIKLSENTFLTNAQL
FT                 LADIELLDKLEKX"
XX
SQ   Sequence 4184 BP; 1239 A; 680 C; 844 G; 1421 T; 0 others;
     taggcctggg caaaataccc gaacccgaaa atccgaaccg aacccgaccc gtaagatccg        60
     atccgaatgc actttggttc cctgcctaat acccggtcgg atctttctct tttgtaactt       120
     cggttctggg ttcgggttcg ggtaataccc aagaaccgaa agtacttttc tcgatccgaa       180
     cttatataca cacaatagca ttaaccctta cttgccttag cttgttcttc ttcccaattt       240
     ttgatttatt aaaccctaga gcgtatcaac acaaatcgca acaagctgga aaccctaact       300
     catttgtttc tgccgtctca ttcttcagag aagtcaagaa ctcgactcga tccgaggtac       360
     ttttcatttt tctacttctg tgattttgct tttgtttctt tgagtcactg attcaaatat       420
     gtagtttata attgtaattt cgttttggtt ttgtatttct ctgttgtatt cttagttgat       480
     ttcttctaat ttatctgttt tcattagtta aatttttcaa tttatttgat tctatttttg       540
     tatctgtgga gaaaaaaaat ctgagtttgt gtgagttttg atctccaaat tttcatctct       600
     taccaccaat tgatctgttg tgcatcttaa tttttttgaa tataaattta caagagcatc       660
     acttacccaa aagcatcgac tccctcagat tcaaattttg gtgatttagc tcaactttag       720
     gctcatctac accacttcta actcaaacgt tatattctat taccatgctc tgtttttttt       780
     taagttatag gactctgttt taagcatcga ctttgtttct tttaagtaag cttgtaaata       840
     taccttcata ttttgatata taacattcac attttatcaa aataaatttg tccgactctc       900
     ttttatatgt tgacagttgt gtgtgtgtat gtgtttgatc caattgtttt aaaattatta       960
     atagtaagtt cactggatcg tgaataatat agtttggtat gtatgcatcc aagagtctta      1020
     tagactatta attcattaat tcctagtatg catccaacgt gtgatagatt gcattattaa      1080
     gtgtaactag actattaagt tatagtttca tgctagtgct gcaacgtgtg atagcttact      1140
     ttattaagta ttattcttat tcaattgtta accgattatt gtttatattt tttttctttt      1200
     gcagatggat tcttcagcaa atccaaacaa tactgaaagt aacacaaaag gaaacgaaga      1260
     tgagggtagg actcgaccta ttgataacag taaagggaag agaaaaagcg atgtcgctga      1320
     tgatggtgat agtgctaacc cttgtaagcc aaagaagaag ttgcaaacaa ggtcttgggt      1380
     ttgggatcac ttcacgagaa aagatggtga tgatgaccaa tgcaaatgtc attactacaa      1440
     gaggttcttt ggatgttcaa caaaatcagg gacttcaaac ttgaagaaac atttggattg      1500
     ctgcaagcat tactcggcat ggaaaggacg ccagtctcag aatgttatta atcaagaggg      1560
     aaatctacaa agtggaaaag tttctaagga agtttttaga gaggctacga atgaaatgct      1620
     tgttttggga caactgccac tttcatttgt tgaaagtgtt gcttggaaac atatatgcag      1680
     caaagctaat ctctacaagc ctcattcaag aagaacagct actagagata ttattttaat      1740
     gaatgtggcc agaaaagcat ctctgaagga tttggtttca gctaataaac gtagagtgtc      1800
     tcttacaact gacatttgga ctgctcaagc tacaggtgct agctacatgg taatcactgt      1860
     gcatttcatt gatgagtatt ggcgtttaag aaagtttatc attggcttta agtacatcgc      1920
     agatcacaag ggagctacaa tatcaagggt tctacttgag tgtttgactg aatggggaat      1980
     agagaggata tttaccatca cagttgacaa tgcaactgcc aatactagtg cactcaggaa      2040
     gttccagaga gctttacaat cacagagagc tgattctttg gtgttaaatg gagattttat      2100
     gcacatgagg tgttgtgctc atatcatcaa cttgattgtg aaagaaggtc tgcacaaatt      2160
     gggtaatcat gtggaagcca tccgcaatgg agtgctatat gtgagatctt ctacttctag      2220
     atgtgactca tttgagcaga aagttgtgac aggtaagatg acaaggggga gtttgccttt      2280
     ggatgtcaaa acaaggtgga attccaccta tttgatgtta acaagagcaa tcaagtttaa      2340
     ggtggcattt gacaagatgg aggctgaaga caagttgtac aatgaccact tcttggaagt      2400
     agtcgatggg gaaaagagga ttggaccgcc tactacaatt gattggaggg aagtagagag      2460
     gttagtaaag tttcttggct tattctacac tgctactttg gtcgtttcag cgtcaagtat      2520
     tgtttgctct tacaagtgtt atggtgagat agtcaccata gaaaaaaatc tgctgggaat      2580
     gactcatagt tatgataaag agttgaggga aaaagctgtt gaaatgaggg aaaaattcga      2640
     caagtattgg gatggacaaa agaatatcaa taggatgttg ataattgcta gtgtgtttga      2700
     tcctagacag aaaatggaat ttgctaaaat gtgctttgag aaactttatg gtgtagacac      2760
     ttcagaagcc aaggagatgt ataattctgt ttatgatgtc atgaaggcta tgctgaagga      2820
     gtacactgtc attttcaagg gaccaaacac acaatcatca cagtctaatc cgccttcatc      2880
     tactgctgcc agagatactt ttgcatgtga gttagctgaa gatagtaatg ttgagtttga      2940
     aaggatggac aggtcatata aagagatggt taatgaaatt agggttactg atcctaaaga      3000
     tgagttagat atctatctga aggcagaggt agaaaatcct aagactcttc ctggaatgga      3060
     gtgggatgtc ttgtcttggt ggagactcaa tagtcagaag tatccagttt tatcagaaat      3120
     tgcaagagat gtacttgcaa tgcaagtgtc atctgtcgca tctgaaagtg cttttagcac      3180
     cagtggtcgt cttttggagc caagtagaag ctgccttact cattatatgg tagagacttt      3240
     ggtttgcctt gagcagtggt tgaaaagtga aatcaagctg agtgaaaaca cttttctaac      3300
     aaatgcacaa cttcttgctg atatagaatt acttgataag cttgagaaag gtaactttat      3360
     ctatgtagtt tactagtttt agttttagat gttgtttgaa aactctctta tgttctaaca      3420
     caacttgggt gttgattgaa tctttttcag agtttcaaac tgaagtgaac ttggactaaa      3480
     agactaatca aggaaacgac tacaaggtaa cttcatcact ccattttgtt ttcttttact      3540
     tctgaacttg gtttatagct caatgttaat atactagact catgaatcaa cgatcatttc      3600
     gtatttgact tttacttggt ttatggttta atgtttactt atggtttttt atttttcaac      3660
     tgagcttatt tggttttgat gtaacaggaa caagtcatga agaatctatc atgtttggat      3720
     gttgctttgg atttgaactt ctttctttac tttgaatgct ttggatttga ttctgaacga      3780
     tggttttatg tcttgctttg gatttgaact tctttcttct atttggatgg ttttatttgg      3840
     atgttttgaa tcttgctttt tggttgaacg tgtgaaactt ttattatgtc atgctttatt      3900
     gattttactt caagtttttt ttattacaaa tttacaggtt ttatggtata tgtggttagt      3960
     atcaagtatg ttcgggtagt tatgaactag tatccaataa tattcggtta cttttcggat      4020
     tttcaatgga agtaccaata cctacccaaa cccaaaatat accggaccga acccgaaccg      4080
     aagttttcaa atacccgaac ggggtctaaa attatagttc cgaaaaatcc gaacccgaaa      4140
     gaaccgatcc gaacccgaac cgaataccca aacgcccagg acta                       4184
//
ID   ATCOPIA65_I repbase; DNA   ; ATH   ; 4165 BP.
XX
AC   AB025639;
XX
DT   05-NOV-2001 (Rel. 6.1, Created)
DT   05-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA65 copia-like LTR-retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; LTR-retrotransposon;
KW   COPIA superfamily; copia-like polyprotein; internal region;
KW   ATCOPIA65LTR; ATCOPIA65_I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4165
RA   Kapitonov V.V., Jurka J.;
RT   "Internal region of ATCOPIA65 copia-like LTR-retrotransposon.";
RL   Repbase Reports 1(2), 18-18 (2001).
XX
DR   GenBank; AB025639; Positions   13692   17856.
XX
CC   ATCOPIA65_I is an internal region of the ATCOPIA65 copia-like
CC   endogenous retrovirus flanked by the 1% divergent ATCOPIA65LTR
CC   long terminal repeats, and by a 5-bp target-site duplication.
CC   ATCOPIA65_I encodes well preserved remnants of the 1374-aa
CC   copia-like polyprotein ATCOPIA65p.
XX
FT   CDS           join(42..683,687..4163)
FT                 /product="ATCOPIA65p"
FT                 /translation="MSEIVEATSKGKEGGGSASIQCPMLNSVNYTVWTMR
FT                 MEAVLRVHKLWGTIEPGSADEEKNDMARALLFQSIPESLILQVGKQKTSS
FT                 AVWEAIKSRNLGAERVKEARLQTLMAEFDKLKMKDSETIDDYVGRISEIT
FT                 TKAAALGEDIEESKIVKKFLKSLPRKKYIHIVAALEQVLDLKTTTFEDIA
FT                 GRIKTYEDRVWDDDDSHEDQGKLMCVKTXSQDGKLMYANSDSQGQYEFQD
FT                 RGRGRGRGRFGRGRGRGYQQRDKSKVTCYRCDRLGHYASDCPDRLLKLIR
FT                 LQEQKEKEEDDTHEAESLMMHEVVYLNEKNIRPTELESCINNAWYLDNGA
FT                 SNHMTGNRAWFCKLDEMITGKVRFGDDSCINIKGKGSIPFISKGGERKIL
FT                 FDVYYIPDLKSNILSLGQATESGCDIRMREDYLTLHDREGNLLIKAQRSR
FT                 NRLYKVSLEVENSKCLQLTTTNESTIWHARLGHISFETIKAMIKKELVIG
FT                 ISSSVPQEKETCGSCLFGKQARHSFPKATSYRAAQVLELIHGDLCGPISP
FT                 STAAKKRYVFVLIDDHSRYMWSILLKEKSEAFGKFKEFKALVEQECGAII
FT                 KTFRTDRGGEFLSHEFQEFCAKEGINRHLTAPYTPQQNGVVERRNRTLLG
FT                 MTRSILKHMNMPNYLWGEAVRHSTYLINRVGTRSLSNQTPYEVFKHKKPN
FT                 VEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEPGSKAYRLLDPTKR
FT                 RIFVSRDVVFDENRSWMWQESSSETDKESGTFTITLSEFGNNGVTENDIS
FT                 TEPEETEEAEINGEDENIIEEAETEEHDQSQEEPQPVRRSQRQVIRPNYL
FT                 KDYVLCAEIEAEHLLLAVNDEPWDFKEANKSKEWRDACKEEIQSIEKNRT
FT                 WSLVDLPVGSKAIGVKWVFKLKHNSDGSINKYKARLVAKGYVQRHGVDFE
FT                 EVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGELREDVYVSQPE
FT                 GFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFEKCHKEPSL
FT                 YRKQEGENILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTY
FT                 YLGIEVLQSKDGITLKQERYAKKILEEAGMSKCNTVNTPMIASLELSKAQ
FT                 DEKRIDETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALK
FT                 QILRYLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLDDGKSTGGHIFYLN
FT                 DCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIWLQELLAEVIGTECEK
FT                 VTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEVEHVPGV
FT                 RQKADILTKALGKIKFLEMRELIGVQGVSKEDFKLKRE"
XX
SQ   Sequence 4165 BP; 1476 A; 708 C; 961 G; 1020 T; 0 others;
     tttggtatca gagcatctag gtttgatatt gaaacacaaa catgagtgaa atcgttgaag        60
     caacaagcaa aggtaaagaa ggtggaggat cagcgtcgat ccaatgtccg atgctaaact       120
     ccgtcaacta tactgtatgg accatgagga tggaggctgt gcttagagta cacaaacttt       180
     ggggaacaat tgaacccgga tcagccgacg aagagaagaa tgatatggct cgggctttgc       240
     tctttcaatc catacctgag tcgttaattt tacaagttgg taaacaaaag acttcttcag       300
     ctgtctggga agccataaaa tcaagaaatc ttggtgcaga acgagtaaaa gaggcgagat       360
     tacagacact tatggcagaa tttgataagc tgaagatgaa ggatagtgag acgattgatg       420
     attacgttgg taggatctca gagattacta caaaagctgc agctttagga gaagatatag       480
     aagaatccaa gatcgttaaa aagtttctca aaagtttgcc aagaaagaaa tacatacaca       540
     ttgttgcagc cttagaacaa gttcttgatc tgaaaacaac taccttcgaa gacattgcag       600
     gaagaatcaa gacttatgaa gacagagttt gggacgatga tgactcacat gaagaccaag       660
     gcaaacttat gtgtgttaaa acataatcac aagatggcaa actcatgtat gcaaattcgg       720
     attcacaagg gcaatacgaa tttcaggaca gaggtagagg aagaggtcgt ggacgatttg       780
     gaagaggaag aggaagaggt tatcaacaaa gagataaaag caaagtcaca tgttataggt       840
     gtgatagact cgggcactat gcctctgatt gtccagaccg tcttctcaag ctgatccgac       900
     tccaagaaca gaaagaaaaa gaggaagatg acactcatga agcagaatca cttatgatgc       960
     atgaggtggt atatctcaac gagaagaata ttcgcccaac agagttagaa tcgtgtatta      1020
     acaatgcttg gtatcttgac aatggtgcta gtaaccatat gacgggaaat cgtgcttggt      1080
     tctgtaagct tgatgagatg atcacaggga aagtaaggtt cggtgatgat tcatgcatca      1140
     atataaaagg aaagggttcg attcctttta ttagtaaagg aggtgaaaga aaaatactat      1200
     ttgatgttta ctacatacca gacttgaaga gtaacatctt aagtttagga caagcaactg      1260
     aatcagggtg tgacatcaga atgagagaag actacttaac cttgcatgat cgagaaggaa      1320
     atctactaat aaaggcgcag cgatcaagga acagattata taaagtgagt ctagaagttg      1380
     aaaactccaa gtgcctgcag ctcacaacaa caaatgaatc aacaatatgg catgccagac      1440
     taggacacat cagttttgag accattaaag ctatgataaa gaaagaactt gttattggga      1500
     tatctagctc agttccacaa gaaaaggaaa catgcggttc ttgtttgttc ggaaaacaag      1560
     ctagacattc attcccaaaa gcaacttctt atcgtgcagc acaagtactt gaactcatcc      1620
     atggtgatct ctgtggacct atttcaccat ctacagcagc taagaagagg tatgtatttg      1680
     tattgattga cgatcattca cgatacatgt ggtctattct actaaaggag aaaagtgaag      1740
     cgtttggaaa gtttaaagag tttaaggcac tagttgagca agagtgtggg gctatcatca      1800
     agacattcag aactgataga gggggagagt tcttatcaca cgaatttcaa gagttttgtg      1860
     caaaagaggg aatcaataga cacttaactg caccatacac gcctcagcag aatggagttg      1920
     tggagagaag gaacagaaca ctcctaggaa tgacaagaag tattctcaaa cacatgaaca      1980
     tgccgaatta tctttgggga gaagctgtga gacattcgac ttatcttata aacagagttg      2040
     gaacaagatc actttcaaat caaacacctt atgaagtctt taaacataag aagccgaatg      2100
     ttgaacattt aagagtgttt ggttgtgtta gctatgctaa agtcgaagtt ccaaatctga      2160
     agaaattgga tgataggtct cggatgcttg tttatcttgg tacagaacct ggttctaaag      2220
     cgtatcgact acttgatcca acaaaaagaa gaatctttgt gagcagagat gtcgtctttg      2280
     atgaaaacag aagctggatg tggcaagaat caagctcaga aactgacaag gaatcaggga      2340
     cattcacaat taccttaagc gagtttggaa ataatggagt cacagagaat gatatctcta      2400
     cagaaccaga agaaacagaa gaagctgaga taaatggaga agatgagaat atcattgaag      2460
     aagcagaaac tgaagagcat gatcaatctc aagaagaacc tcaacccgta agaagatcac      2520
     aaagacaagt aatccgacct aactacttga aagactacgt gttatgtgca gaaatcgaag      2580
     cagaacacct tttacttgct gtcaatgatg aaccgtggga cttcaaagaa gcaaacaagt      2640
     caaaagaatg gagagatgct tgtaaagagg aaattcaatc aatagagaag aatcgcactt      2700
     ggagtttggt cgatctccct gttggaagca aagcaatagg agtcaagtgg gtttttaaac      2760
     tgaagcataa ctctgatggc agcataaata aatataaagc aagactagtg gcaaaaggat      2820
     acgttcaacg acatggtgta gactttgaag aagtatttgc tccggtggct cgtattgaaa      2880
     cagttcgtct cataattgct ttagcagcct caaatggttg ggagatacat catttggatg      2940
     ttaaaactgc attccttcat ggggaattaa gagaagatgt ctacgtctca caacctgaag      3000
     gcttcacaaa caaagaaagc aaagagaaag tctacaaact gcacaaagct ctctatggat      3060
     tacgtcaagc accccgggct tggaacacta agctaaatga aattctcaaa gagttgaagt      3120
     tcgaaaaatg tcacaaagaa ccctcattat acagaaaaca agaaggcgag aacattcttg      3180
     ttgtagccgt atatgtggat gaccttcttg tcacaggctc taacttagac atcattctca      3240
     actttaaaaa gggaatggtt ggaaagttcg agatgagtga cttaggtaaa ctcacatatt      3300
     atcttggtat agaggttcta caaagtaaag atgggattac gctgaaacaa gaaagatatg      3360
     caaagaagat cttagaggaa gctggaatga gtaagtgtaa cacagtcaat acaccaatga      3420
     tagctagttt ggagctgtct aaagcacaag atgagaagag gattgatgag actgattaca      3480
     gaagaaatat tggttgtctt cgttacttac tccacacccg tccggatctc tcttacaatg      3540
     ttggcatact gagtagatac ttgcaggaac cgagagaatc acatggagct gcactcaagc      3600
     aaatcctaag gtaccttcaa ggaacaactt cacatggact ttacttcaag aaaggagaaa      3660
     atgcaggatt gatcggctat agtgacagca gtcacaacgt ggacttagat gatggtaaaa      3720
     gcaccggagg tcatattttc tatcttaatg attgtcccat cacatggtgt tcacagaagc      3780
     aacaagtggt tacgctatct tcttgtgaag ctgaatttat ggcagccact gaggcagcta      3840
     aacaggctat ttggctccaa gaacttctgg ctgaagtcat tggtactgag tgtgagaagg      3900
     taacaattcg agttgataac aagtctgcta tagctctcac aaagaacccg gtgttccacg      3960
     ggagaagtaa acacatccac cggagatacc atttcattcg ggagtgcgtt gaaaatggac      4020
     aaattgaagt agaacacgtt cccggagtaa gacaaaaagc tgatatacta acaaaggctc      4080
     ttgggaagat taagttctta gagatgagag agcttattgg agtacaagga gtgtcaaaag      4140
     aagatttcaa gcttaaaagg gagat                                            4165
//
ID   ATCOPIA23I  repbase; DNA   ; ATH   ; 4502 BP.
XX
AC   AB010693;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   03-MAY-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA23 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; copia-like polyprotein;
KW   ATCOPIA23LTR; ATCOPIA23I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4502
RA   Kapitonov V.V., Jurka J.;
RT   "ATCOPIA23I.";
RL   Direct Submission to Repbase Update (00-APR-1999).
XX
DR   GenBank; AB010693; Positions   43282   38781.
XX
CC   ATCOPIA23 is a putative active copia-like LTR retrotransposon,
CC   it has 5 bp-long target-site duplication, and its LTRs,
CC   ATCOPIA23LTR, are identical. Its internal region, ATCOPIA23I,
CC   encodes 1449 aa-long copia-like polyprotein (position 146-4995).
XX
SQ   Sequence 4502 BP; 1194 A; 1234 C; 835 G; 1239 T; 0 others;
     tggtatcaga gcagtgattc taaaagacct aatttttttt ttttttttaa aacaaaagag        60
     ccgcctctct cttcgacctt tcttcttctt ctcgctcccc ttctttctct acaagcttgc       120
     tcttcaagct tcatcatttc cggctatgtc ttcctcctca gaaaccgttg ttgttgctga       180
     ttctacctct ctcctcaatg tgaacatgtc caatgtcaca aagctgacat caacaaactt       240
     tctcatgtgg cgtcgtcaag ttcatgcgct attggatggg tatgacctcg ccggttacgt       300
     tgatggttcg atcgaagaac ctcacaccac agtcactgtc catggtgtta cctctcccaa       360
     tccagaatac aaactctgga aacgccagga taaactcatt tactctggcc tcatcggtgc       420
     catctctgtt gcggttcaac ctctcttgtc ccaggctacc acctctgccc agatctggcg       480
     taaactcgtt gacacttacg caaatcctag ccgtggccac aagcaacaga tccgtgaaca       540
     aatcaaacaa tggaagaaag gttctcgttc cattgatgac tacgttcttg ggctcactac       600
     tcgttttgat caacttgcac tacttgaaga agccatacca catgaagatc aaatcgcgta       660
     catacttggc ggtctctccg atgattatag gcgtgtcatt gatcaaattg aaggacgtga       720
     tatttcgcct tcaatcacag agctacacga gaagctcatt aactttgagc ttaaactcca       780
     agcgatggtc cctgattcct ctactccggt taccgctaac gcagcctcct acaacaacaa       840
     caacaacggc cgtaacaatc gctcttcttc tcgtggcaat caaaacaacc aatggcagca       900
     gaatcaaaca caacagtctc gctccaacaa tcgtggctct caaggcaaag gctatcaagg       960
     tcgttgtcaa atctgcggtg tacatggtca tagtgcgcga cgatgctctc agtttcagcc      1020
     ctatggtggc agtggtggtt cccaatcagt gcctagcggt tatccaacca acggttattc      1080
     accttctccg atggctccat ggcaaccacg agctaacatc gccactgctc ctccgtttaa      1140
     cccatgggtt ctagatagtg gtgcgacaca ccatctcacc tcggatttgg caaatctctc      1200
     aatgcatcag ccctataccg gtggagaaga agtaaccata gcggatggtt cgggtctacc      1260
     tatttcacac actggttcag ctttactccc tacaccatct cgatctcttg ctcttaaaga      1320
     tatcttatat gttcctaatg ttagcaagaa tcttatatcg gtttatcggc tgtgtaatgc      1380
     taaccaagtt tcggtggaat tctttcccgc acattttcag gtgaaggatc tcaacacggg      1440
     ggcccgatta ctccaaggca gaactaggaa tgagctatat gagtggccgg ttaaccagaa      1500
     atccatcact atccttaccg cgtctccatc accaaaaacc gacctctctt cttggcatca      1560
     acggcttggg catcctgctt tacccatttt aaaagatgtt gtttctcatt ttcatttacc      1620
     actttcaaac actattccaa aacagcttcc atgttcggac tgttctatca ataaaagtca      1680
     caaattacca tttttcacaa acaccattgt ctcttctcaa cctcttgagt atctatacac      1740
     cgacgtttgg acgtctccat gcatttcagt tgataactac aagtattacc ttgtcattgt      1800
     tgatcacttc acaagatata catggatgta tcctctcaag cagaaatcgc aagtgaaaga      1860
     tgtgtttgtg gctttcaagg ctttagtgga aaaccggttt cagtcacgaa tacgaacctt      1920
     atactctgac aatggcggtg agttcattgg ccttcgcccg tttcttgctg ctcatgggat      1980
     ttctcatctc acaagcccgc ctcatacacc agaacataat gggttagctg aacgaaaaca      2040
     tcgtcatatc gtagaaaccg gtcttgcgct tctcactcat gcgtcattac ccaagacatt      2100
     ttggacgtat gcttttgcaa ctgcggtgta tctaatcaat aggatgccaa cggaggtctt      2160
     acaaggcacg tctccttatg tcaaactctt tcaaatgagt cctaattatc ttaagctccg      2220
     agtatttggc tgcttgtgct acccatggct acgtccgtac aacactaata agcttgaagc      2280
     acggtcaacg atgtgtgtgt ttcttggata ttcgcttaca caaagcgcat atttgtgtct      2340
     cgacatagcc accaaccgca tctacacttc tcggcatgtc cagtttgttg aatcaagttt      2400
     tccgtttgct tctcctcgaa catcggaaac cgactctaca cagacaatgt ctcaaccgac      2460
     caccaccaat gttatcccgc ttctacaacg accgcctcat atagctcctc ctactgcctt      2520
     gcccttgtgt ccgatctttc actctccgcc gcactcaccg tcgtctcctg cctctccacc      2580
     ttcagagcat gtgccattga ccgccgcttc atcatcgtca aacgccatta acgacgacaa      2640
     tatttcctcc acaggccaag taagtgtttc tggcccaact tcacaaagcc cacatactac      2700
     acctacaaac caaaacacaa gcccactaag caaaagccca aatccaacca atacaaatca      2760
     atcccaaaat tccacgcctc ctacttcgcc aactacgtcc gttcaccaac actcacctac      2820
     tccgtcacca ctaccacaaa atccaccgct tccaccacct ccacaaaacg accaccctat      2880
     gcgtactcga gccaaaaatc aaatcacaaa acctaaaacc aaatttaacc tcaccacatc      2940
     tctcacgtct tctaaaccga caataccgac gacagtagca caagctctca aagatccaaa      3000
     ttggagaaat gcaatgtcag aggagatcaa tgctcaaatg aaaaaccaca catgggattt      3060
     ggtgtcaccg gaggaagcta aacatgttat ttcttgtaag tggattttca cgcttaaata      3120
     taacgttgat ggctctattg caaggtataa ggcgcgactt gtagctcgag gcttcaacca      3180
     acagtatggc attgactatt cggagacgtt tagtccggtg ataaagtcaa ccactattcg      3240
     tactgttcta gaggtggcgg ttaagcgaaa ttggagtatt catcaagtcg atatcaacaa      3300
     tgcatttctt caaggaactc taaacgaaga ggtgtatgtt tcgcagcccc cgggatttat      3360
     agatcgtgat cggccaagtc atgtttgccg cctcaataaa gctttatacg gcctcaaaca      3420
     agctcctcgg gcttggtatc aagaactacg acgatttctc ctacaagctg gttttgtcaa      3480
     ttctctagcc gatgcctctc tatttatcta taatcggcat aataccttca tgtatgttct      3540
     tgtatatgtc gatgacataa tcattgcagg agaaaacgct cttgtacaag ccttcaatgc      3600
     ctcacttgcc agtcggtttt ctctaaagga tctagggcct ctcagttatt tcttggggat      3660
     cgaggccact agaacttcac gcggcttaca cctaatgcag cgaaaatata taaccgactt      3720
     actaaagaag cacaatatgc ttgatacaaa gcccgtgtcc acaccgatgt caccgacgcc      3780
     aaagctctct cttctctccg gaacggctct tgatgatgca acggagtatc gcaccgtcct      3840
     tggcagcctc caataccttg cgtttacacg cccagatata gcttttgcgg taaatcgcct      3900
     ttctcagttc atgcatcgtc caaccaatga acattggcaa gctgcaaaac ggattcttcg      3960
     gtatctcgcg ggaacaaaat cgcatgggat cttcctccgc tccgatacgc ctctaacaat      4020
     acatgccttc tcggatgcag attggggatg tgatctggat gcatatctct caaccaatgc      4080
     ctacatcgtt tattttggtg gcagtccggt atcatggtcc tcaaagaaac aacgaagtgt      4140
     cgctcgctca tctacggagg cagaatatcg agctgttgca aacaccgcct cggaactacg      4200
     ttggctctgc tctcttcttt tggaaatggg catatcacaa accacagtcc cggtcattta      4260
     ctgcgacaac attggcgcca catatctatg cgcgaacccg gtgtttcatt ctcgtatgaa      4320
     acatgtggct cttgattatc actttgtcag aggttacatt caatccggag cattgcgagt      4380
     ttctcatgtt tcgactaagg atcagctagc tgacgcctta accaaaccct taccacgtcc      4440
     acgttttacg gagctcaata gcaagattgg agttcaagaa ttacctccat cttgaggggg      4500
     tg                                                                     4502
//
ID   HELITRONY1C repbase; DNA   ; ATH   ; 3060 BP.
XX
AC   AC004793;
XX
DT   19-JAN-2001 (Rel. 6, Created)
DT   19-JAN-2001 (Rel. 6, Last updated, Version 1)
XX
DE   HELITRONY1C is a non-autonomous DNA transposon.
XX
KW   ATREP11; HELITRON1; Non-autonomous DNA transposon;
KW   HELITRON superfamily; HELITRONY1C.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-3060
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY1C.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
DR   GenBank; AC004793; Positions   67745   64686.
XX
CC   HELITRONY1C is a non-autonomous DNA transposon related to an
CC   autonomous HELITRON1-like transposon.
CC   There are two 94% identical copies of HELITRONY1C in the genome.
CC   There is a 87% identity between HELITRONY1C (position 1-3060) and
CC   ATREP11 (1-1055); their 30-bp 3'- and 19-bp 5'-termini are
CC   90% and 100% identical with each other.
CC   HELITRONY1C and HELITRON1 share the 88% and 72% identical 230-bp
CC   5'- and 180-bp 3'-termini, respectively.
CC   There is a 68% identity between HELITRONY1C and HELITRONY1A
CC   (they share the 100% and 91% identical 20-bp 5' and 30-bp 3'
CC   termini, respectively).
XX
SQ   Sequence 3060 BP; 1213 A; 433 C; 330 G; 1084 T; 0 others;
     atctacatat acatttttgg aacgatttgt gtagaaaaat tctttttcaa ttttgatatt        60
     gtatgtttag tccctataaa atcaatcaaa caagatattt tatttaggac aatgaccaaa       120
     cttttgttta actattatga tattgcacta actacttgcc taaacataga tattgttaat       180
     tattacccta ataaattgca caaatcaatc cctataaact ctacgtaatt cgcaaatcat       240
     taattcctaa ttactaaatt tgatactaaa tcctaactaa ccatatctat aattacttag       300
     attcggaaat cattatagtt ttaaatgcta atgaaatctt accaaaattt attcttttgt       360
     tatcaattac aacaataatt ccggtttgat tagtaaatcc aaaaatgtat aatacaaaac       420
     gattaacgct aaacaattgc cattaaaact ttccactatt atcaataata tacattcatt       480
     tcgaaatata tgagaatatc aacaatttga ttttttatca actactcata tctacatttc       540
     tatttattta aaataagcat atacttgatt ttaaggaata ttagtgcctc acaatatcat       600
     aatcttacca catcaaatta tttcccaaat ctttgccaat attctcggaa aaatctttct       660
     aaaatatctc gacataacta attgctatac actacaaaat atttatacat aagattttat       720
     agaaaatttt aattattatg acaaatcgca tttatagcat atacctaaaa tattctaatt       780
     acgtatattt gattccattt tagttaagat cgcaaattaa ttttgcttgc tcaccaaaat       840
     attgacctaa tcattccaag cctatatata ctacatatgt ttatctccca tcacattatc       900
     aaacacacac atcatgggca ttctttttat ttttttttta tttttttgta cgtattaccc       960
     ttctttatga atgtgatgtc aatgtattga tgttgatttc tgtattaaag aacacaatac      1020
     ttgagaattg tgtatttctt ttttcttttt ggtaacgacc tgtgtattat tgttccaaac      1080
     tatttagata ttcatatatg aacgtttgtg tgtatatata cgtgtgttta attttgttgt      1140
     atttgcggtt ctgttttttt ttattttgta aagaagttta tgtaagtaaa aaattaaata      1200
     tacatgtcaa ggtgaagcaa aaagatgggg agccgtacgt accccaccgg aagctgaagc      1260
     taaagctcta ctaatgtcaa tgcatcaagt gtggtctgac tgctatacat caatttatca      1320
     aaaatagaga ctctgaagcg ctcatcaaca tcatcaaggt tcttacggtg gacttcatta      1380
     ccgaagcctt acgcaaaaat attcactttt gggcaaccaa gtttagaaat atctttttct      1440
     cttttactaa aatatcgtgt aatcagttag ctcatttgtt ggcagaaaaa ggttagatag      1500
     attctatgtt tttctcggat tgtttgagtc ctttgattta gatttatgat atgttgtatt      1560
     atgatcggac ctaataatct ttattcaata aagttttttc gttgaaaaaa ataaaataat      1620
     agttaaacaa acgtgaatgg tttagaactt tgactataaa atagaaccta aaattactat      1680
     atttactttg atctaaaaat aataatcata tattaaattt tatttttaaa atctaaagta      1740
     caaaaactaa atatttgcca tgggggttaa aacctcttga ttttgatgga tcaggtcaaa      1800
     aacatattca tataaatatt cagccataat aaagctaaat aatactatac tttaaatata      1860
     agagttacat cgaattaaaa atcatacaca ataaattggt taattttata tacaacaaaa      1920
     tcataagttt ataaataaca aaaattttta agaaacagcc cgtcgtatat tgcggatcaa      1980
     tctcagctag aataatgcac taattattta gattttaaat tttaaataca agatattata      2040
     cagattttta ataatattta gtatatatgg aacaaaaaaa aaacaaataa ttctttattt      2100
     cacgtacata ccatttccta tatactttta atattttcat actaaaatcc taaaaccaaa      2160
     aaaaatcaat ttttaaaatc tgctacatcg ttacttaatg aactgtatgt ttcgtatcta      2220
     aattttaaat attgaaacct aaacaatact aatcatacac taaataatac atagatatat      2280
     atctatattt aaataagaca aattaatatg ttatatcttc agctaatctt caaaaaaaaa      2340
     accaaattaa tatgttatat cttcagctaa tcttcaaaaa aaaaaaaaaa aaaaatatgg      2400
     tgttcaattt gacgggacat attatatggt agcacgggtt ggtcgatatt aatacaagat      2460
     gtataacatg ggtgaaatcc taaaataaac aatcaaaata taattataca ggaatataat      2520
     taaaaaaaaa aaaaaaaaaa ttatacaatt atacggaaaa ttgttatacg gtaggacggg      2580
     ttttggtcta tattaatata gacggtatac agtgggtgaa attctagaac taacaatcaa      2640
     aatacaattt aagaaaaaca aacaaacaat attaataaaa caattacaac ttaaattttg      2700
     tcataaaaaa attaactcgc agtgtaccgc gggtcatatc catatctaca tatacatttt      2760
     aggtagttat aatactttta cttttaacaa aaaaaagtat tatataacaa acacataatt      2820
     acgtaccata aaatacacac tctatataaa tgatgtgtat aataaaaaga tttttctaaa      2880
     ctaaacaaca tcaaaccaaa caaatactaa tataacatca aaagtaaata gatataaaat      2940
     gtaaaatgat gaattcaaaa tataacttga tattaaatat ggataatatt aaataaaaat      3000
     aataatttaa tttctaacgc aaataatcaa cccgcggtgt accgagggtc aatatctagt      3060
//
ID   ATCOPIA90_I repbase; DNA   ; ATH   ; 4887 BP.
XX
AC   AC069326;
XX
DT   30-NOV-2001 (Rel. 6.1, Created)
DT   30-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Internal region of the ATCOPIA90 copia-like LTR-retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; reverse transcriptase;
KW   LTR-retrotransposon; COPIA superfamily; copia-like polyprotein;
KW   internal region; ATCOPIA90LTR; ATCOPIA90_I; the ATCOPIA90 family.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4887
RA   Kapitonov V.V., Jurka J.;
RT   "Internal portion of the ATCOPIA90 copia-like LTR-retrotransposon.";
RL   Repbase Reports 1(3), 24-24 (2001).
XX
DR   GenBank; AC069326; Positions   30244   25358.
XX
CC   ATCOPIA90_I is an internal region of the ATCOPIA90 copia-like
CC   endogenous retrovirus flanked by the 99% identical ATCOPIA90LTR
CC   long terminal repeats and a 5-bp target-site duplication (GAAGC).
CC   ATCOPIA90 forms a separate family of copia-like retroviruses
CC   present in the A. thaliana genome since members of other families
CC   are less than 75% identical to ATCOPIA90_I.
CC   ATCOPIA90_I (positions 442-4878) encodes remnants of the 1479-aa
CC   ATCOPIA90p copia-like polyprotein. The ORF which encodes
CC   ATCOPIA90p is damaged by two false stop codons at positions
CC   2503-2505 and 3457-3459 (marked by Xs in the ATCOPIA90p sequence).
XX
FT   CDS           join(442..2502,2506..3456,3460..4878)
FT                 /product="ATCOPIA90p"
FT                 /translation="MALNVRNKLGFIDGTILKPNETHKDFGSWSRCNDMV
FT                 ATWLMNSVSKKIGQSLLFISTAEGIWKNLMSRFKQDDAPRVYEIEQRLSV
FT                 IQQGSMDVSAYYTELVTLWEEYRNHVELPVCTCGKCECNAAALWEKLQQR
FT                 SRVTKFLMGLNESYEATRRHILMLKQIPTIEDAFNMVTQDERQKNIKPVS
FT                 KIDNVVFNTSDNNQLSYYDGSVQNQNQNVYQGPLDNNVYAAMQNQYIPRA
FT                 PRPVCTYCGQTGHVIQKCFKKHGYPPGYIPGFKSNGGYQNQPTRPFTPFF
FT                 NQNLDPRAQFSNSRPTTQHAANMMNGNQQAISAPNVDVSQMNKEQMQSLL
FT                 QQLNSQVQLSENQVPIPLVASVTQNGVMDSQSFSGSVSFPSTSLRFENNK
FT                 LTFQHQCLSSLSNQIPQGSWIIDTGATSHVCSDLTLFNDIVTVTGVTVSL
FT                 PNATRVEIAHTGTIHLSSSLILHDVLHVPSFKFNLIFVSSLLKHSNASAH
FT                 FFPDFCYIHESIQNLMIGKGVLLHNLYILELDSPHPATHSSLSAPHFSGS
FT                 LMVDGHLWHQRLGHPSSDKLKLLSGTLSMPKNSSLVESHCPVCPLAKQKR
FT                 LSFESHNHMSSSPFDLIHLDVWGPFKRESVEGYKYFLTIVNDHTRVTWIY
FT                 MLRNKSDVSKCFPVFLKYVSTQYNAILKRIRTDNAPELAFTDILEQSGIT
FT                 HXFSCPYTPQQNSVVERKHQHLLNVARSLMFQSNLPLAYWSDCILTSVFL
FT                 INRIPSKVLNNLTPYEMLTKKAPDYSFLKSFGCLCYVSTLQKDRHKFSPR
FT                 ADKCVFLGYSSGYKGYKVLHLDSNIVSVSRNVIFHEKDFPFKTATHSIPA
FT                 SDIFDKCVLPASTPFDIDSPSHIHHDASDIHTPALHTTPHSSVTDHSQEA
FT                 VTSDTTTVSLPTVRPKRTSKAPGYLSDYHCALIQTSSPPEKVTTTPYHIS
FT                 SFLSYDQFSPDYQSFICNISIETEPKIFKQAIISEKWTAAMGVELGSMEL
FT                 NKTWSVVSLPQGKNVVGCKXVFTIKYNADGSIERYKARLVAKGFIQQEGV
FT                 DYFDTFSPVAKLASVKLLLDLTAKKGWSTSQMDISSAFLHSDLEEEIYMS
FT                 LPEGYTPPDGVPLPPNAVCRLHKSIYGLKQASRQWYKCLSAVLLDDGFIQ
FT                 SYADNMLFVKVTGTSIVALLVYVDDILIVSNDDEAVRSVKAVLGKHFKTK
FT                 DLGEAKFFLGLEIARNADGISVSQRKYCLDMLADSGLLGCKPKSVPVDPK
FT                 VPLTKETGTLLENARPYREIIGRLLYLCITRPDITYAVNRLSQFLSCPTD
FT                 VHLQAAYQILKYLKNNPGQGLFYSSQPDICLNGFADADWGTCLDTRRSTS
FT                 GMCVFLGHSLITWKSKKQDIVSSSSTEAEYRSMAVTTKELLWLSQMLKDL
FT                 HIQVDSSAKLFCDNKSATYIAINPVFHERTKHVEIDCHITRDQVKNGFLK
FT                 VLHVATENQLADIMTKPLHPGPFYSLLSRLSVSSLFNPSDDSA"
XX
SQ   Sequence 4887 BP; 1423 A; 966 C; 907 G; 1591 T; 0 others;
     tggtatcaga gcaaaaataa gctctttgtt ttctcattcc ttcccgggaa agtgaccaag        60
     aaaattcaca aatcctatca tcttcttcca caaattctcc gattgatctt cacatatctt       120
     cgattaatca ccatcttcat cgattacatc cattttcttt cacaaattca tccatttctc       180
     agatcaacga actcatcaaa atcgattcgt tgtttcattc atttccgcca aaatcaaagt       240
     cactttcttt gggaatcttc ttccgctact caagatcttc ttcgttttct ctgattcttt       300
     cgattctttg attctatgat gactactgat caatacgata accattactt tcttcacaac       360
     tccgatcacg caggcttagt tcttgtgtca gatcgactta cgactggagc tgactttcac       420
     tcttggcgat gatcggtgcg aatggcactc aatgtccgca ataagcttgg gttcatagat       480
     ggtacaattc ttaaacccaa tgaaactcat aaagattttg gatcgtggtc ccgttgcaat       540
     gatatggtag ccacatggct catgaattct gtttccaaga agattggaca aagcttgtta       600
     ttcatttcca ctgctgaagg catttggaag aatctgatgt caagatttaa acaagatgat       660
     gctcctcggg tgtatgagat tgagcaacgt ttgagtgtta tacaacaagg ttctatggat       720
     gttagtgcat attatacaga attggtaacc ttatgggaag aatatcgtaa tcatgtggaa       780
     cttcctgtgt gtacttgtgg taaatgcgag tgtaatgcag ctgctctttg ggagaaattg       840
     caacagagaa gcagagtcac taagttcttg atgggtctca atgaatccta tgaagctact       900
     cgcagacata tcctaatgtt gaagcaaatt ccaaccattg aagatgcgtt caatatggtg       960
     actcaggacg agcgtcagaa gaatatcaaa ccagtgtcta agattgacaa tgtggtgttt      1020
     aatacttcag ataacaatca gttgagttac tatgatggta gtgtacagaa tcagaatcag      1080
     aatgtctatc aaggtcctct tgacaataat gtctatgctg caatgcagaa tcaatatata      1140
     ccaagagcac caaggccagt ttgtacttac tgtggtcaga ctggtcatgt aatccagaag      1200
     tgtttcaaga aacatggata ccctccgggt tatatcccag ggtttaagag taatggagga      1260
     tatcagaatc aacctacaag accatttact ccatttttca atcagaatct agatccaaga      1320
     gcgcagttct ctaactctag acctacaact caacatgctg caaacatgat gaatggaaat      1380
     caacaggcta tatcagcacc aaatgtggat gtaagccaga tgaacaagga acaaatgcag      1440
     tcattgttac aacagctaaa ttctcaagtt cagctttcag agaatcaagt tcctattcca      1500
     ttagtagcgt ctgttacaca gaatggtgta atggattctc aatctttttc gggtagtgtc      1560
     tcttttccat ctacttcact acgttttgaa aataataaac tcacatttca acatcagtgt      1620
     ctatcatctc tttctaacca aattcctcag ggtagttgga taattgacac tggagcaaca      1680
     agtcatgttt gctctgattt gactctattc aatgacattg tcacagtgac tggtgttaca      1740
     gtttctttgc ctaatgccac tagagtggaa attgcacaca ctggcactat acatttatca      1800
     tcatctctta tattgcacga tgttttacat gttccatcat tcaaattcaa tcttatattt      1860
     gttagtagtc tattaaaaca tagtaatgca tcagctcatt tctttcctga tttttgctat      1920
     atccacgagt ctattcagaa cttgatgatt ggtaaaggag ttcttctgca taatctttac      1980
     attctagagc ttgattcacc acatcctgct actcattcat cattgtctgc acctcatttc      2040
     tctggatcct tgatggtaga tggacatcta tggcaccagc gcctcggaca cccatcttct      2100
     gacaagttaa agttgttgtc tggtacactt tctatgccta agaatagttc tttagtcgag      2160
     tctcattgtc ctgtgtgtcc tctagctaaa caaaaacggt taagtttcga gtctcataat      2220
     cacatgtctt cgtctccatt tgatttgatt catttagatg tctggggtcc atttaaacga      2280
     gagtctgtag aagggtataa atacttcctt accattgtta atgatcatac tcgtgtaacc      2340
     tggatttaca tgttaaggaa taaaagtgat gtttcaaaat gttttcctgt ttttcttaaa      2400
     tatgttagta ctcagtataa tgccattttg aaaagaataa gaactgataa tgcaccagaa      2460
     ctagctttta ctgatattct tgaacaatct ggaattacac attaattttc ttgcccttat      2520
     actccacaac agaattctgt tgtggaacgc aaacatcagc atttgttgaa tgtagctagg      2580
     tctttgatgt ttcaatctaa tcttccttta gcatattgga gtgattgcat attaacatct      2640
     gtcttcctga taaatagaat tccatcaaaa gttttgaaca atttaactcc ttatgagatg      2700
     ttaacaaaga aagcacctga ttactctttt ctaaaatcgt ttggttgttt gtgttatgtg      2760
     tctactttac agaaagatag gcataagttc agtcctagag cagataaatg tgtcttttta      2820
     ggctactcat ctggatataa aggttacaaa gttttacatt tagactcgaa cattgtatct      2880
     gtctctagga atgtcatttt ccatgaaaaa gattttccat tcaaaactgc aacacattcc      2940
     atccctgcat ctgatatatt tgataaatgt gttcttcctg cttctactcc ttttgacatt      3000
     gattcgccat ctcacattca tcatgatgca tctgacattc atacacctgc attacacaca      3060
     acaccacact ctagtgtcac agatcattca caggaagctg taacttcaga cacgaccaca      3120
     gtttcattgc ctacagtcag accaaagcga acttctaaag ctccaggcta cttatctgac      3180
     tatcactgtg ctctcataca aacatcatca ccaccagaaa aggtcacaac tactccttat      3240
     catatttcct cttttctttc atatgaccaa ttttcaccag actatcaatc cttcatatgc      3300
     aatatttcga tagagacaga accgaaaatt tttaagcaag ctattatctc tgagaaatgg      3360
     actgctgcta tgggtgtgga acttgggtct atggaactta acaaaacatg gagtgttgtt      3420
     tctttacctc agggtaagaa tgtagtaggc tgcaaatgag tttttactat taagtataat      3480
     gctgatggct ctatagaaag atataaggcc agattagtag caaaggggtt tatacaacaa      3540
     gaaggagttg attattttga tactttctct cctgtggcaa aattggccag tgttaaactt      3600
     ttgcttgatc taacagctaa gaaaggttgg agtacttctc agatggatat ctctagtgct      3660
     tttttacaca gtgacttgga ggaagagatc tatatgagtt taccagaggg gtacacgcca      3720
     ccagatggag ttccattgcc tcctaatgct gtttgcagac tgcacaaatc catttatgga      3780
     ttaaaacaag cttcacgcca gtggtataaa tgtttatcag ctgttcttct tgatgatgga      3840
     ttcattcagt cctatgctga taatatgcta ttcgtcaaag tcactggtac gtctattgtt      3900
     gctctacttg tttatgtaga tgacattttg atagtgagca atgatgatga ggctgtgaga      3960
     tccgttaaag ctgttctagg gaaacacttt aaaaccaagg atttaggtga ggcaaaattc      4020
     ttcttaggac ttgagattgc tagaaatgca gatggtatct ctgttagtca aaggaagtat      4080
     tgtttggata tgctagctga ttcaggacta ttgggttgca aaccaaaatc tgtacctgtg      4140
     gatcctaaag tccctttaac caaggaaact ggtactcttt tggagaatgc aaggccttac      4200
     cgtgagataa ttgggaggtt attgtatttg tgcattacta ggcctgatat cacctatgca      4260
     gtgaatcggc tgagccagtt tttatcttgt cccactgatg ttcacctaca agcagcgtat      4320
     cagattctga agtatcttaa gaacaatccg ggtcagggtt tgttttattc ttctcaacca      4380
     gatatatgct taaatggctt cgctgatgca gactggggta cctgccttga tacaagacga      4440
     tctacttctg gtatgtgtgt ttttcttgga cattcactga ttacatggaa gtcaaagaag      4500
     caggacattg taagcagcag tagtacagaa gctgagtatc gatccatggc tgtgactaca      4560
     aaagaacttc tatggttgag tcagatgctt aaggatcttc atatacaggt tgattcatca      4620
     gctaaactgt tttgtgacaa taagtctgca acttatattg cgattaatcc tgtatttcac      4680
     gagagaacga aacatgtcga aattgattgt cacatcacac gagatcaagt gaagaatggc      4740
     ttcttgaagg ttctacatgt agctacagaa aatcaattag cagacatcat gacaaagcct      4800
     cttcatcctg gtccattcta ttctctcctt agtcgactat cggtttcaag cctctttaat      4860
     ccttcagatg attcggcttg agggggg                                          4887
//
ID   ATHILA      repbase; DNA   ; ATH   ; 10505 BP.
XX
AC   X81801;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   A.thaliana DNA for Athila retroelement.
XX
KW   Athila; retrotransposon-like element.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-10505
RA   Pelissier T., Tutois S., Deragon M.J., Tourmente S., Genestier S.,
RA   Picard G.;
RT   "Athila, a new retroelement from Arabidopsis thaliana.";
RL   Plant Mol. Biol 29(3), 441-452 (1995).
XX
RN   [2]
RP   1-10505
RA   Pelissier T.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (19-SEP-1994)T. Pelissier, GDR 977
RL   Biomove CNRS, Universite Blaise Pascal, 24 Avenue des Landais, 63177
RL   Aubiere Cedex, FRANCE.
XX
DR   GenBank; X81801; Positions       1   10505.
XX
CC   These 10.5 kb elements, representing 0.3% of the genome, present
CC   several features of retrotransposons and retroviruses. Athila elements
CC   are flanked by 1.5 kb long terminal repeats (LTR) that are themselves
CC   bounded by 5 bp perfect inverted repeats. These LTRs start and end
CC   with the retroviral consensus 5'TG...CA3' nucleotides. A putative
CC   tRNA-binding site and a polypurine tract are found adjacent to the 5'
CC   and 3' LTR respectively. The central domain is composed of two long
CC   open reading frames (ORFs) of 935 and 694 amino acids. Despite several
CC   indications of recent transposition activity, the translation of these
CC   ORFs failed to reveal significant homology with proteins associated to
CC   retrotransposition. The authors suggest that the Athila family could
CC   result from the transduction and dispersion of a cellular gene by a
CC   retrotransposon.
CC   LTR 1..1539
CC   CAAT_signal 518..522
CC   TATA_signal 561..566
CC   misc_feature 586..591
CC   /note="potential cap site"
CC   primer_bind 1543..1557
CC   /note="complementary to Lupine tRNAglu 3' end"
CC   CDS 1732..4539
CC   /note="Athila ORF 1"
CC   /codon_start=1
CC   mRNA 5248..>7332
CC   /note="Athila ORF 2"
CC   misc_feature 8946..8952
CC   /note="poly purine track"
CC   LTR 8954..10505
CC   /rpt_type=TERMINAL
CC   polyA_signal 9567..9572.
XX
SQ   Sequence 10505 BP; 3021 A; 2271 C; 2245 G; 2968 T; 0 others;
     tgatatgtct ataattttca tgatttaggc attcattctt caccactttg tcattgtttc        60
     atccacgttt catctcatta ggagtcgttt tagtgtgttt tacatacttt ggacgatttt       120
     gcattaggat tgcatgtgca tggcatattt ggttgttttc aggtactttg gatgcttttg       180
     gagttcaaac agaggaaaat cagaatgccc aatgacgcct tcagcaaaag tactctatcg       240
     cagcctcgga gccctgctag ggcaaatcac tctatcgcaa ccccggagaa gcaaacagct       300
     cagtttcact caatcgcgaa gccggaggaa tcaccccatc gaaaccactc gatcacaccc       360
     tcatgacatc cactcgatcg cactcgatca caaggtcgct ggaccattca atctcgactt       420
     cactgcattt cactcgatcg caagacggag cccctgaagc ccagtttgat caatgacata       480
     ctcgatcact aggaagctca tttcagcccg tcagatgcca atgacacatt cggtcgcagg       540
     atcatgacgt gaagattcgc tatatattta gtttccttat ttgtttcatt ttttcgctta       600
     tataaactac ctcttagggt tttcctaggg cgtcggctag catccgctat tatccgtttt       660
     atttcgcttt tacattttcg caactttgat agccgcagtg tttctcctgc gactttgtag       720
     tttcgttctc aagtatttga tattcagttt tcgtttaagt ctttcgtcat ttctgttatc       780
     atgttttcaa ttgttgcttt gttattgtct ttgattatgt ctgagtagtg aactgtattt       840
     ctgaggatgg gatagaatag ttgtggttta cttggtcgtt ttaggtggtt gagtttagaa       900
     ttctagaatc ccttctggat tagttgcgct tattgcttat ttcactggct aatgtggagt       960
     atgagtccag acgtccagcg ctcaaaaggc gtttaatggg cgttggatcc tattaattcc      1020
     agagatatct gactctaccc caagggattg gctgtagaga gggtattgac tttaacatgt      1080
     tgattcgata atgcctgctt agttagagat cgctaaaggg atttaggtca gtgtctagct      1140
     ttgcttgagg atttctatca cgggagtgaa ttaatctgtt gttgaacttg ttgtctaggg      1200
     ataggttctg tgaagttttg tcaaccgact gaatagatta agtagaccac actattcgat      1260
     taccccatcc ttaggaatcg tttatccatt tgattgcctg ttatcatttc tgctttgtca      1320
     ttcacttgcc tgctattgcc attcctgctt ttagtttcac ttcatttctg ttattgcata      1380
     ctaggactgt tagaaccaac caactttctg cttggcttga cttagagctt tctgatcata      1440
     tctcatctgt ttgcatcaca ccggattgga ttgacatcct aaaatactac aacgacaaga      1500
     tagtgtttta gggattaatt gagtaaaatc ctactatcaa tttggcgccg ttgccagttt      1560
     ggtgtttgtt tgctatattt gagatcatta gaaacattaa gatcaagttc gtttttgtta      1620
     cacaagttac taacattgtg ccttttctgt ctttgtgttt caggtacctt gcaacctgct      1680
     ttccagacgc atctctgatt cgtctgttat agcacggctg ctatctgttg catgcataca      1740
     cggtcacaag gaaatcagaa cctgctattc aacgataaca tcgaccgtat tgctcgccaa      1800
     ctaagagaac agacagaaac agacacaatg gctgacgttg tagatgagca agagcaacct      1860
     accaacattg gtgctggtga cttccctcac aaccacaacc agcgtcatgg aatcgttcca      1920
     cctccagtac agaacaacaa ctttgagatc aaaagcggtc tcattgctat ggttcagggg      1980
     aacaagtttc atggcctgct aatggaggat ccgctagatc atcttgatga gtttgaaagg      2040
     ctctgtcgcc ttactaaaat caatggagtt agtgaagatg gtttcaagct tcgcttgttc      2100
     ccattttcac ttggagataa agcccatctg tgggaaaaaa cgctacccca tggatcaatc      2160
     acgacctggg atgactgcaa aaaggccttc ttggcaaaat tcttctccaa ctccaggact      2220
     gcaagactcc ggaacgagat atccggattc actcagaagc aaaatgaaag cttctgtgaa      2280
     gcttgggagc gctttaaggg ttatccaacc aaatgccctc atcacggatt taaggaagca      2340
     tctcttctca gcacacttta cagaggcgtc ctgcctaaga tacgtatgct ccttgacacc      2400
     gcctccaacg ggaatttcct gaacaaggat gtcgaagacg gatgggagct agttgaaaac      2460
     ttggctcagt cggatggcaa ttacaatgag gattatgaca gaagcatctg caccagtact      2520
     gaatctgatg acaagcaccg ccgagagatt aaagctctcc atgacaaaat cgacaaactc      2580
     ctccaagtgc agcagaagca tgttcacttc gcctctgaag acgaagtatt ccaaatccaa      2640
     gagggggaga atgatcaggg cgctgaaatc agttatgttc agaaccaagg cggctccaac      2700
     aaagggtaca acaattacag acccaaccca aatctgtcat acagaagcac aaatgtcgcc      2760
     aatcctcagg accaagttta ccttcaacag cagctgcagc agaaccaacc caaaccgttt      2820
     gttacttaca accaaagcct agggttcgtt cctaagcaac agttccaagg agggtatcaa      2880
     cagcaacagc caccacctgg tttcacacca caacaacatc aggcctctgc accccaggaa      2940
     tcagacatca agaatatgct ccaacagatc atgcaaggtc aagccgcagg ggtaatggaa      3000
     tctgctaaga agatagctga cttaaacaac aaagttgaca gacagttcaa tgaactgagt      3060
     agcaggttgg aatcattgaa cacaagggta cggtatctgg acggcgtcac tacttcacca      3120
     cctgttacaa acaacccagg ccagcttcca ggaaaagcaa tccaaaaccc taaggagtac      3180
     gccactgcac acgcaatcac tatcagacat gagcgagagc tgccaactca acatgtctct      3240
     acatcaaaca ctgaggacag cgtaattcaa gaaggggagg cttccactca gattgaagtc      3300
     tctgttgctg agatcgacta ttcagctcaa cctttctttc aggctcagtc tgacttggag      3360
     gagaaggctg ctataatcga gaggatggtg aaacgattca agccagctcc atcaccctca      3420
     cttgctcttc catggacgtt caggaaagct tggaaaagca gatatgaatc tctggcagaa      3480
     aaacaacttg gtgagatgga agctgtgatg cccttagtag aagttctcaa gttgatttca      3540
     gaccctcaca aagatgtgag aaacctgata ctggaaaggc tcaacatata tcaggattca      3600
     gatgacgaag acgatgtcat tatgcatcaa gccgctggtg agaggattat tcaagagaag      3660
     ctggaagatc ctggatcttt cactctgcca tgttcgatta ggcaattgac tttcaacaat      3720
     tgtctatgtg atctaggagc ctcagtcagt ttaatgccac tctctgtggc aaggaagctg      3780
     ggattcattc agtataagcc ctgtgacatc actttgatcc ttgctgatag aacttcaagg      3840
     agacctttca gcattctaga gaacgtacca gtaatgatag atggagttga ggtacccact      3900
     gattttgtcg tgcttgaaat ggatgaagag tctaaggatc ctttgatctt aggaagacct      3960
     ttcttagcct cagtgggagc agtaatagat gtcagatatg gtaagattga tctcaacctt      4020
     gggaggcatg tcaagttaca gtttgacatc aacaaatttc cgacaaggcc accaatagaa      4080
     ggaaaaacct tagaggtcca gagagcggat ccaagtgaag gccttgagat caaaagaggg      4140
     aaggagcaaa tttcggttca aactccgcca tcgaactcga ctactcgatc gagtataccc      4200
     tcctcacttg attggctgga actcaaaagg aagactgatc tacagaacag aaccattcag      4260
     aagctgagct acactgttga aaagcttaga gacaaactaa gtcgaatgca aaaggaggtt      4320
     cagccccagc tcaaccatga cacgatttca agaaaggaga tcacctggga ttggtcagaa      4380
     gagaaagact accctccaga ggaggaagca gcatactatg aggaaagaag aattgagtac      4440
     tcagctgtgc aactgtcaag ggaggatgct gagtatgatg atgatatcag tgaagaggag      4500
     gacttctcaa gttccctctg tcacattttc tccacttgat tagtgtgagg agtcaagcta      4560
     gagactctaa acaagctcac ttgggaggaa gtcccatgac tatccctgta tatacttttt      4620
     atttatttgt tacttttgat tcgttttggt tgtgtctttg attctcagga aatgaataac      4680
     agctggagtg atcaacaagg atgtgatcga gtgttaaaat gaaaattttc caaatttttt      4740
     ttcaaatact cgatcacaac ataggagtga aagctcagga gtgcgatata gtagattcgg      4800
     gataacaatt ttctactaga tcgcaaggag gagtgaaagt gtccacagaa cgtcaatgac      4860
     aaacctcagt cccattaagc ctactggatt tcaatctcca ccaaaactcc aaaaagccca      4920
     tgctgtgtcc aattgtagcc catgacacga aattaaagga tcaacaaccc atactcgatc      4980
     acaaggcgcg tgacttgaag gaaccccatc ctgccgacat aaagcaccat gttttgtcac      5040
     cttatcacgt tgccgacatc ataacgggca ttgcatccca tccgtccgtt taaaagcaac      5100
     acacctcctc cactcattca aatcgcaaag ggagataagt gtcatcactc ttcacttttc      5160
     ttcatcactt gtgatttcaa aacatctctc ttgtttatct ctctacttca ctaccaaaaa      5220
     cgctctcaac tctttcgttg ttgctagctg ttattgacta aaacagaacc tcagaaacta      5280
     ctctatcgca accctgtctc tcatttgctt gcttcactcg atcgcgacct gagctctcac      5340
     tatcaaattc tactcgatca caactctata tcaataggaa gtcatttctt tcattgtctt      5400
     tgtttgtttc tcactaacct actgagcttt agttgtgagt ttcaaatcga tttcagcttc      5460
     aagatgagtt cacacagcta cgaatcatct atggatgccg actacaatgt tgatgatgtt      5520
     gaatcttggt caactaggcc aaagagagaa gcagatgagt ataggcgatt tgtggaggaa      5580
     acagagcgag cagtcgccaa tgacaggaga agagaagaga tagccagagg gaagaggtca      5640
     atgacggaaa attatgagct aattgatgaa gagatggaag atgatgcgga gtacattcca      5700
     gagcaaaccc gcaagaccac caagtcccta atgaaagaag acaagctgac gccgggagac      5760
     tactacaagg ctctcaaaag aaatccgttt tggggaacaa gatatcctca cccggagaca      5820
     atggcggagt taggcatctt ggaagacgtt cagctcttgt tcgagaaatg ccacatgaca      5880
     acactcatgt ctcatcccta tcctacctat gaggatgaga cacttcaatt cctttcatca      5940
     cttcaagtgg aattgtttga gggattgtca gctgttgagt taagagaaga agggcttggt      6000
     tacttaagct tcaccatcga cgaccgcgac tatatcatgg cgatcaagac gctggaatcc      6060
     atgtttgggt ttcccagtgg cacgggaatg aaaccgaagt ttgcccgaga ggaattgaaa      6120
     tctttgagga acacaatcgg agacaccacc agcttcaact ccgcaagatc caagagcaac      6180
     tccatctgca atcccgccat tcgctatttc cagagagcca tggccaatgt cccttacgct      6240
     agggagatat ctgccactgt gacgaaccaa gacatggaga cgttagacct ggcgctgcta      6300
     agtttcctcc gttacaccaa ggacgggaaa acgatgaagg gagataccaa tgacacacca      6360
     ccgtcaatgt atcttctcaa tcacttatcc agctacagag ggtgggcaat ggccaatgac      6420
     aaaaagaacg cgaaaggagc cctttgcatt ggaggagtgg tcacaccaat tctcctatcg      6480
     tgcgacgtcc cgctgcgacc ggatccaatc caaccacgtt ggatggatat cgcccatctc      6540
     aagcttgccc atgtgatcga acataaggtc tatgacggga ggtacgcttt caagtttgat      6600
     cacccgtcaa caggcgaagc aacttttctt ctcccattca gtgaaatgac aaccatcacg      6660
     gtgagagaca acatcgactt ctcgccacca caagaaatcc tccatgctgt gattggagga      6720
     tccgcgtccc gaaatgctga agaagtagaa ggtcagagtg acaatgagga gaccaattgg      6780
     gagaactatg acacgagccg ctaccacttt gaagaacaca agcccccttc acgagaaagc      6840
     aagagtctcg ctgaagcaca ccggaagctc aatctaaccc aaaggtggtg caagtttcaa      6900
     gacaagatca tccataagtg tgtcaaggcc attgacaaca tgcagaaggc aatcagttgc      6960
     accacatcca ccagtgcgat caccagggac aacccgccag aagacatgcc atccaggcgt      7020
     catgacattg ccccgccaag gcaatctgct tatcaacaga gagaacgcgc tgtcccgcaa      7080
     gaacccgcac gacactcgtc tcacgaggtc agggagcaca agaggcggaa gagcgctagg      7140
     atggttcgat catcaagcaa gggtcggata atgtcggggc ggagaacacg tgagcgtcgt      7200
     gctgaacaac ctgctggggt tgcgatcgag cacaatgacg aggagatgac ggagccacat      7260
     caagaaccgg tcatgcctgc tgagtacact caagcagata tgaatgacta catctccagg      7320
     acattctact gaggtaacac accaaaactc tttgtaaata tcgcttttgt ttttgtttct      7380
     gtgtttatct tgaattcttt cacaaatttt gattacacaa gggactgcat aatttaagtt      7440
     tgggggaggg ttcaagacgt atttgacttg ttttttgtga atatcatttg agtctgcata      7500
     tcatctaagt catagaaaaa aacaaaaaaa tttgaaaatt tttgaaaatg aattccacaa      7560
     aaacagagtg atcatttagt tgcattacat ttagaatcaa gtctagagtg tttcatatag      7620
     gattgttgca tatgcatagg ggataatgag gaaatagcct tgtaagcatg atgattcact      7680
     aaaatgagtt attagttctc tgaggcattt gaatgacttt gaagtaaaac cgcaccatgt      7740
     tctatagaaa ccactcgatg catgtcatga cacctttccc tgtcaatttg aacttgaatc      7800
     tgacttataa ttatcatgtt tgcatcgttt ttgaactcgt ggatagaata catatttgga      7860
     ttttctttca cttattcacc actcttgtta atccaagtag ctgcttctat tattggagta      7920
     gttcccccac ccttaaccaa cccttctttc aagccatgtt attttgtgag agcatgtgag      7980
     gcctattttc aggattgagc ttggtagaac gtgttaggtt tgagccgaca agagtagtat      8040
     ctcatgtagt tccaatccgc gttttcggac ttggtaggac taggtgggaa cttatttggg      8100
     gattgagatt gagtgtgaaa agaaaaagaa agaaaaaaat aggttagagt ctttaggaga      8160
     aggaagctga aaatcatatt gtggtctagt gaatgtttgg gaagcataga attgttaaga      8220
     tatgttctaa agaaatagat ggcaataaaa aaaaaaaaaa aaaaaaaaag aaaaaaaaga      8280
     aaaaaaatga taagagccat aagagtttaa gaaaaaccca agtcactaga ctagactcat      8340
     agagtttaag aaaagcttct ccttaagaac aagagccaaa gaaaagaaaa ggaaacgttg      8400
     atccaagaaa aaatcgaaat atgcctttag tgcaaaaggg tagacttagg atcatcattg      8460
     ggtttagaga taggactatc tacttgttat tcacggttta tgtcattggg tagatggggt      8520
     gctattcttg tatgcatagg ttggcactta cctttagcat tcttctaaag ctaagtcctt      8580
     tttattgaga gtcccctgct attaaaatct gaaccactaa aaagggacca tctttgtctc      8640
     ataacctgtc attagccaaa tgagttcact agcgatgcat atcttgattc atttttttga      8700
     acttaatgaa tgttaaaggg attggttgat cttgacgcat tgtgcatttg agtgtaggtt      8760
     tggatcataa cagagcatgg ctaaagtttt tgagtagaag tcgatcacct cgcatcttag      8820
     aactgttagc tggtacattg atcttaattg tcatatctca tgctttggtt ctgaatcccc      8880
     aacttcaaac ctctccttct gcttatgtct tcttgtttgc ttgagggcaa acaaagacta      8940
     agtttggggg agttgatatg tctataattt tcatgattta ggcattcatt cttcaccact      9000
     ttgtcattgt ttcatccaca tttcatctca ttaggagtcg ttttagtgtg ttttacatac      9060
     tttggacgat tttgcattag gattgcatgt gcatggcata tttggttgtt ttcaggtact      9120
     ttggatgctt ttggagttca aacagaggaa aaacagaaca tgaagtcaga atgcccaatg      9180
     acgccttcag caaaagtact ctatcgcagc ctcggagccc tgccagggca aatcactcta      9240
     tcgcaacccc ggagaagcaa acagctcagt ttcactcaat cgcgaagccg gaggaatcac      9300
     cccatcgaaa ccactcgatc acaccctcat gacatccact cgatcgcact cgatcacaag      9360
     gtcgctggac cattcaatct cgacttcact gcatttcact cgatcgcaag acggagcccc      9420
     tgaagcccag tttgatcaat gacatactcg atcactagga agctcatttc agcccgtcag      9480
     atgccaatga cacattcggt cgcaggatca tgacgtgaag attcgctata tatttagttt      9540
     ccttatttgt ttcatttttt cgcttatata aactacctct tagggttttc ctagggcgtc      9600
     ggctagcatc cgctattatc cgttttattt cgcttttaca ttttcgcaac tttgatagcc      9660
     gcagtgtttc tcctgcgact ttgtagtttc gttctcaagt atttgatatt cagttttcgt      9720
     ttaagtcttt cgtcatttct gttatcatgt tttcaattgt tgctttgtta ttgtctttga      9780
     ttatgtctga gtagtgaact gtatttctga ggatgggata gaatagttgt ggtttacttg      9840
     gtcgttttag gtggttgagt ttagaattct agaatccctt ctggattagt tgcgcttatt      9900
     gcttatttca ctggctaatg tggagtatga gtccagacgt ccagcgctca gaaggcgttt      9960
     aatgggcgtt ggatcctatt aattccagag atatctgact ctaccccaag ggattggctg     10020
     tagagagggt attgacttta acatgttgat tcgataatgc ctgcttagtt agagatcgct     10080
     aaagggattt aggtcagtgt ctagctttgc ttgaggattt ctatcacggg agtgaattaa     10140
     tctgttgttg aacttgttgt ctagggatag gttctgtgaa gttttgtcaa ccgactgaat     10200
     agattaagta gaccacacta ttcgattacc ccatccttag gaatcgttta tccatttgat     10260
     tgcctgttat catttctgct ttgtcattca cttgcctgct attgccattc ctgcttttag     10320
     tttcacttca tttctgttat tgcatactag gactgttaga accaaccaac tttctgcttg     10380
     gcttgactta gagctttctg atcatatctc atctgtttgc atcacaccgg attggattga     10440
     catcctaaaa tactacaacg acaagatagt gttttaggga ttaattgagt aaaatcctac     10500
     tatca                                                                 10505
//
ID   ATREP4      repbase; DNA   ; ATH   ; 2242 BP.
XX
AC   .
XX
DT   24-FEB-1999 (Rel. 3.2, Created)
DT   05-MAY-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   An AT-rich repetitive sequence - a consensus.
XX
KW   ATREP superfamily; Dispersed repeat;
KW   putative nonautonomous DNA transposon; ATR2; ATREP4.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2242
RA   Kapitonov V., Jurka J.;
RT   "ATREP4.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   Individual copies of ATREP4 are ~94% identical to the ATREP4 consensus
CC   sequence. The nature of the repeat is unknown. Target sites are not
CC   well determined since ATREP4 copies are flanked by (AT)-rich
CC   sequences.
CC   An existence of several ATREP4 subfamilies determined by multiple
CC   diagnostic positions indicates that ATREP4 can be a retroelement.
CC   At the same time, multiple copies of ATREP4 have internal deletions
CC   typical for DNA transposons.
CC   ATREP4 shares common structural features with other ATREPn elements;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
SQ   Sequence 2242 BP; 923 A; 276 C; 213 G; 823 T; 7 others;
     atctatatta ttaattggga agcattgtgt gaactacaac attgtaaggg tagtttaaaa        60
     ctaactaaat gaatttttgc atgggtaatt tagtaaatta acaactacta caactaaata       120
     aatatcttgg attttgttct ttwaaaaaaa cgaatttaaa atcaataaat taataactac       180
     ccaatatttt cggaaatcat ttaaaaacgt ttccataaca tatcaggcta ttttaattcg       240
     aattgtatat atgtaaactt atttattttg gtaatatgtt attagataat tcggaaactt       300
     caatctaatt taataacaaa ttatcattta gtttagattt tatacaattt ccttaacaaa       360
     actatgttaa ttgtttctga ttagtacaca taaaaaataa ttttaaatta tgatttagca       420
     tattcaaaag agaatttttg gattttagat ttgtaattat ctagaaaata gtttcagtat       480
     agattaaaat atttaacatt ttaattagaa tttaaatgat ataaactttt aaagtatttt       540
     tttaaaacag gtaattttca ttattttaaa aatatatcac taagctaaat ttgaattata       600
     taaaagaaaa tatattttta aacgtattat aatagttaca agcttttgga atattcattc       660
     ttctagattc gattatttct ttttttttaa acagtaaaac aaagtttaaa taccaatgtt       720
     taaaattttt aatgcaaata ttcaaaatga gaaaatattg attcacacca atatyttatt       780
     tttttctttg aaatttgaat gacttttttt tggaacaaac agtaatatga tttttttgac       840
     agatcattaa ttgtattcga acaataataa ctaccatatt tgcgataatg cataaggata       900
     agtttaattt taaaaaatac caaaatcgtt gagatcatag taaattttag ctttaaaaaa       960
     aaatattttc gtcatcctaa atttaaaata tgtaattcag attagttttt ttcagtaaag      1020
     ctaagattga atccaaatta aaatctaatt ttgcgtacaa tctatctctt ataattataa      1080
     atgttatgca tacattcaca ttgcctcaca atcaatctag aatatcgatt ctttaaaaaa      1140
     aatagataga gattcataag taaattactt catgttctaa tgatgtttat ctcctaattt      1200
     tactatccat ttatgcgtat tcttatggat ttttctttca gggtcaacac tagattacaa      1260
     gaaactagcc gggtgttggt caatattata ccacanataa aatcatggaa ttaacaatca      1320
     aaatatagtt atacaatctt aaacaataaa caaaacaaat ataacttaat ttaatttttt      1380
     atttttaact aaaatcaaca aatttatyag tttataaaaa acaaaataaa aattagcacg      1440
     tggtacccta cgggtaaatc actacgattt catgaggttg caatatcaat ttatacaaat      1500
     tttgactttt aaaatatact ttatacaatt attgaaaggt atacactaaa aatcggtttt      1560
     atatactaca atatcataaa tttataaatc acaaattatt tttaaatata ttaatccaag      1620
     atgtaccaca tgtcaatccc tcgatttttt taatatatta caataacaat atttaaaaat      1680
     aacaaaataa tatttaattt tacggaatga agttatatgg tggaacgagt ttgggttgat      1740
     attaatacgg gacgataatc tacgagtgaa atcttagaat taacaattat aacacaatta      1800
     tacaatctta aacactaaac aaaataaaca atatttacaa aacaactata acttaaaatt      1860
     ygaattttta gttacaaaaa aatcgaccaa cggtgtaccg cggagtaaat tttacattat      1920
     atcatctaat tgatcaaatt tcaaacaaaa acaattaatt tatatataca tcaaactaac      1980
     aaaaatacac agattttcca aatatctcta tattattccg caaatcgaaa caaatctaac      2040
     aatctattta ctatgcaaaa tacaaataaa atataaataa tataaattaa taaaaaaaat      2100
     tagctattgt atcataaata acactataca cttttctatg cacattataa tttatacact      2160
     ayaatatctt tcactaaaaa tgtattccaa tayatttctt aaaatatgaa accccgcacg      2220
     tatgtgcggg tcagaatcta gt                                               2242
//
ID   ATIS112A    repbase; DNA   ; ATH   ; 5333 BP.
XX
AC   AC018660;
XX
DT   01-FEB-2001 (Rel. 6.1, Created)
DT   01-FEB-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   ATIS112A is an autonomous DNA transposon.
XX
KW   TIR; Autonomous DNA transposon; 5 bp-long target-site duplication;
KW   transposase; IS112 superfamily; ATIS112A.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5333
RA   Kapitonov V., Jurka J.;
RT   "ATIS112A.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
DR   GenBank; AC018660; Positions   25609   30941.
XX
CC   ATIS112A is a autonomous DNA transposon.
CC   There are several copies of the transposon in the A.thaliana
CC   genome which are more than 90% identical to each other.
CC   They are bordered by 5 bp-long target site duplications.
CC   ATIS112A has 25 bp-long terminal inverted repeat.
CC   ATIS112A encodes two proteins, ATIS112Ap1 and ATIS112Ap2.
CC   Function of 320-aa ATIS112Ap1 is unclear. It is encoded by
CC   3 exons (834-922, 1262-1444 and 1498-2188).
CC   ATIS112Ap1:
CC   VIWRICNKVCCFLIEYNPNAKVVGLRSNASFINLLNSQDDSHILPPNPYECFELGSANVP
CC   VYSTEWSDDDPSEDEAPIAGKKGRKGRKGRNGWLNTSKDPVVGNEQKGAAFWERIAAYYN
CC   SSPKLKGVEKRGHICCKQRWSKVNDVVNKFVGSYLAASKQQTSGQNDDDVVSLAHQIFSK
CC   DYGCKFTCEHAWRELRYDQKWIAQSTHGKAKRRKCEDDSEPVGLEDKEARPIGVKAAKAA
CC   AKAKGKGKLSPDEGEETNALKEIKSIWEIKEKDHAAKEKLIIIKEKKNRTKLLERLLGKT
CC   EPLSDIEIELKNKLINELLA
CC   ATIS112Ap2 is a 279-aa DNA transposase, which is related to the
CC   transposase encoded by the bacterial IS112 transposon.
CC   ATIS112Ap2 is encoded putatively by 3 exons (3752-3902,
CC   4200-4319 and 4458-5026).
CC   ATIS112Ap2:
CC   MAGSSSNYNLDDMFDDKFDQCFDQALESYGNRQRVKPRKKKTYIERNREEEGTINLFGDE
CC   YLRRPTRDDLIRLLHIGEQRGFPGMIGSIDCTLNDINVFDRSPVFDDILQGRAPKVKYVV
CC   NGKDYNLAYYLTDGIYPKWATFIQSISIPQGNKASLFATTQEACRKDVERAFGVLQARFA
CC   IIKHPALFHDKVKIGNIMRACIILHNMIVEDERDGYTQFDVSEFVHPESASSSQVDFTYA
CC   TDMPSNLGNMMATRARVRDRIKHEELKADLVEHVWQHYN
CC   There are several highly divergent members of the IS112 superfamily
CC   present in the A. thaliana genome (including HARBINGER).
XX
SQ   Sequence 5333 BP; 1638 A; 879 C; 1028 G; 1788 T; 0 others;
     agcaagtcta gcaagggttt ttagtgggtt tctatgttgg gttttttaaa aaaaatgggc        60
     ccggatgaaa aaaaacagaa caatccattt aggatcgttc ctaaaattgg gtttttcgcg       120
     acccaataga aactcatacg tggcttcatt ttattgggta aacgttttga ctaaacaaaa       180
     aaaaaaaaca cgcgtttttt tgttttcttc ttctctctga tttcttcgtg gtcgccgacg       240
     gagaccccaa atcgattctg cttctaacca aatcgaaacc ctcatcatgg ttcgtatctc       300
     ttcttcttcg aatcgatttg attttatgag ctttgaaatt gaattttgaa agagattatg       360
     atctgattgc attggtatgt atattgaatt acgaattctg ggaattttta gttcgtgtac       420
     taagcttgag ctgcatatgt tgttattagc ttgttcttag ttttctatat gtttgcttca       480
     ttctcagtga agtcatattg ttgtttctat attaacatag aaatttcaga tctttatgtg       540
     tttgttctgt agctttgttt gtacctatat ccttcaaaga aaaacttacg gattcaggta       600
     tatgttttgt tgtggtagat agaggagcat tatgtggctc aaggtttaag tattgttgga       660
     tactttgatt tggttgtctg aaaagtttag atgtcgtgta ttcattgcat aaactggctt       720
     ttgcttgtta atctttcaag ccttcaaagc atctggacaa cgattttgca ttatgtattt       780
     gatcttttgg tagttcgttt taattaagtt tttgtttcta tattttttct gaggttattt       840
     ggaggatttg caacaaagtt tgctgcttct taattgaata taatccaaat gcaaaggtgg       900
     ttggcttgag atcgaatgca aggtaattta tcattttgta tttatttatg tgatcaatgc       960
     tttgctgtta tttactgtga taaatgcttc tttgttgata taaaactgta gttagataaa      1020
     cgtcaattgc ttttgtaggt aaacgtcaaa tgctagttct tatagcattt aaaactgtaa      1080
     aactgtgatg attgcttggt aggttaattt tagtcaatag tatttagtat ggcattgatt      1140
     gtgagttgtc taacaaagcc ataatttgcc tttaaaacac aaaaccgtaa cctttgattt      1200
     ttaaaacaca caaccacaaa caataatatg attcaccgaa tccatatcat catacttcaa      1260
     gctttataaa ccttttgaac agtcaagatg acagtcacat tctcccacca aatccatatg      1320
     aatgctttga acttggatca gcaaatgtcc ctgtgtatag cactgagtgg tctgatgatg      1380
     atccaagtga agatgaagca ccaattgctg ggaaaaaggg aagaaaggga agaaagggaa      1440
     gaaagtcaag aaaccaaaga ggaattggtc atcaactgaa gatgttgttc tcataagtgg      1500
     gtggctgaac acttccaagg atccggtggt gggcaatgag caaaaggggg cagctttctg      1560
     ggaacgtata gcagcgtact acaactcaag tcccaagctc aaaggtgtgg aaaagagagg      1620
     ccacatatgt tgtaaacaaa ggtggtcaaa agtgaatgat gttgtgaaca agtttgtagg      1680
     gagctacttg gctgcaagca aacaacaaac aagtggtcaa aatgatgatg atgtggtgtc      1740
     tttggcacat cagatcttct caaaagatta tggctgcaag tttacttgtg agcatgcttg      1800
     gagggagctt agatatgatc aaaagtggat tgctcagtct actcatggga aagcaaagag      1860
     aagaaaatgt gaagatgact ctgaacctgt tggccttgaa gacaaggaag ctcgtcccat      1920
     tggtgttaag gcggccaaag ccgcagccaa agccaaagga aaaggcaagc taagtccgga      1980
     tgaaggtgaa gaaaccaatg ctttgaagga gataaaaagt atatgggaga taaaagagaa      2040
     agatcacgct gccaaagaga agctaatcat tattaaagag aagaaaaata ggactaagtt      2100
     gcttgagcgt ctgttaggga aaacagaacc tctatctgac atagagattg aactgaagaa      2160
     caagttaatc aatgagttgt tggcttgagt ttcagttgta ggttaagtgt ctgtttctag      2220
     attatggttc tctaagtgtc tgttttaact ctgtttttaa gtttagtgtc tgtttcaagt      2280
     gtgtttttat atttagtgtc tgttttttgt ctatgtttta tgtttaagtg tatgactatg      2340
     ttaatcaatg agttgtttca gtttatgagt ttgagttgtt tcactttggc actttcagtt      2400
     tcagtttatg agtttgagtt gtttgacttt cactttcact tcagttctgt tctatttttg      2460
     atctagtctc caagcttact tggtatttta ctgatgcaga acatgtgaga aagaagaaaa      2520
     tgaagagcca acaaaacaaa agttaggtct tgttccagac gaccagtttc ttgctcaaaa      2580
     tccggttaag ttttcttctg actcttacct tttttttttt tttttggttg tatcttatta      2640
     gcagtcatac atttgcagaa taacagaaca gtaggattat ggtttctatt ttagtcaact      2700
     ggttaacgag cttggttgtg ctttggatct tcagtgtgga gttttattat tagttttctc      2760
     gcacaaattt cttcatactg tatctgttct aaaaaattat ggctatgtag gaatagaatt      2820
     tgggctacga agaagtaaaa ccagatacat tttttcgatc tgcaatagat gtatgattga      2880
     aggtatcaat gattacaagc tttaaacatc aatctcctat gtatttttga tagaatttgc      2940
     agacaatgaa acttaaacat gcacctttat tagcttcacg ctcactaatc tgtagaatca      3000
     ttttctgcct tggagctttg agtgtgtata tataacagaa tcatatcggg tgaatcctgc      3060
     agggacaatt gagcttcact acctgttagg tcttgcacca cacatggagc atctaactga      3120
     ggaaacagag ccaacaaaac aaaagttagg tcttgtatct tactagcaac aaaaacgttt      3180
     cagaaacgtt gaaaaagtta taagtccgtg ctctttggaa tgtattatat cattggcaac      3240
     caatttgttt gtttgtgaac attttcaatg attttggacc gcatttaatt ggagtcacat      3300
     gtggacgcag accgcattta accggtttga caaaatatgt gtttctttta acgatgacaa      3360
     accactactg aatcacagaa tcataagcct tgttttaatg gagaagaaag aatatcaagt      3420
     ccaagtgttt gccattcttt agtgccgaca tcaagtactt tagtatgtca ccaaggaatg      3480
     tactttagtt ttgtcaccac aaacttgatt gttcttttca tttgaaccat tgattattgt      3540
     accattcatt tgcaccattc actactcctt tatattgtat gaatgaatgt acaccgaata      3600
     aaaagaattc cgaacacact actcctttat tgttctatat ataatccgaa cactacttca      3660
     atatttctat caactctctt tatcataata ataaacactc ttttttatca aatcattttt      3720
     atctcttctc tctttctata attttgctaa aatggcaggt tcttcttcaa actataatct      3780
     cgacgacatg ttcgatgata agtttgatca atgctttgat caagcattag agagttatgg      3840
     taatcgccaa cgagtcaagc caaggaaaaa aaaaacatat atcgaaagaa atcgtgaaga      3900
     aggtcacatc caattagtga atgattattt tacagagaat ccaacatatc ctccccatat      3960
     attctgacgc cggtttagaa tgaacagacc gttgttcatg cgtatcgttg agaaattctc      4020
     caatgaagtc ccatacttta aacaaagaag agatgccacc ggaagactcg gtttctcggc      4080
     actacagaag tctacagcag caattcgtat gctcgcatat ggtattgcgg ctgatgcggt      4140
     tgatgaatac ctctgaattg gtgaaagcac gtcgctgtta tgtttggaac attttgcaga      4200
     aggaaccata aatctgttcg gggatgagta tctaagaaga cccacacgag atgatcttat      4260
     acgacttctc catattggag agcaacgtgg atttcccggg atgataggaa gcatcgactg      4320
     tatgcattgg gagtggaaaa attgtcccac cgcttggaaa ggacaatata cacgttgatc      4380
     aggaaaacca acaatcgttt tagaggccgt tgcttcacaa gatctctgga tatggcacgc      4440
     gttttttgga cccccaggta ccttaaacga tatcaatgtt tttgaccgct caccagtttt      4500
     tgatgatata ttacaaggtc gagctccgaa agtgaaatac gtagtcaacg ggaaagacta      4560
     taatttggct tactacctca cagatggaat ttatcctaaa tgggctacat ttatccaatc      4620
     aatttcaatt ccacaaggta ataaagcttc tttatttgct acaactcaag aagcttgtcg      4680
     taaagatgtt gagcgtgctt tcggagtttt gcaagctcgg tttgccatta tcaaacatcc      4740
     agctcttttt catgataagg tgaaaattgg caatattatg cgagcatgta taatacttca      4800
     caatatgata gtagaggacg aacgagatgg ttacactcag tttgatgtat ctgaattcgt      4860
     acatccagaa tcagctagct cttcacaagt ggatttcact tatgctacag atatgccttc      4920
     aaatctcggt aatatgatgg ccactagagc tcgagttcgt gatcggatta aacatgaaga      4980
     attgaaagct gatttagttg aacatgtatg gcaacattat aactagaatc aatcttaaaa      5040
     tgtaatcgtt tttttttccg cttttaaata tgtttttttg cttcttcttt ctatatcatg      5100
     tatgtttaaa atttgataat tcttaatcat aatcatattt gctcaaataa aaatatttaa      5160
     caaattttct ttttttcaaa atttttttgt tttagaaacc cacttaagga ttccaccaat      5220
     ggaccaaaaa atttccaaaa actcgtaaaa gtttctaaac tacaaaacta tccaaattta      5280
     ttaataaaaa atacatagaa actatacttt agaaactaat cactggattt gct             5333
//
ID   ATCOPIA13LTR repbase; DNA   ; ATH   ; 157 BP.
XX
AC   AB018120;
XX
DT   12-APR-1999 (Rel. 4.03, Created)
DT   12-APR-1999 (Rel. 4.03, Last updated, Version 1)
XX
DE   Long terminal repeat form ATCOPIA13 LTR-retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Interspersed Repeat; LTR;
KW   LTR-retrotransposon; COPIA superfamily; ATCOPIA13I; ATCOPIA13LTR.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RA   Kapitonov V.V., Jurka J.;
RT   "ATCOPIA13LTR.";
RL   Direct Submission to Repbase Update (00-MAR-1999).
XX
RN   [2]
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
DR   GenBank; AB018120; Positions   18394   18238.
XX
SQ   Sequence 157 BP; 49 A; 21 C; 27 G; 60 T; 0 others;
     tattggggat agagtagaat ctcttgtgat atattttgtg acagagttat gtcctataat        60
     ttagggattc gagtttattt tatacgatga ctctcttgta taaatatcac actttgtgaa       120
     tcaataaact caagttagtg caatacctaa ttctaca                                157
//
ID   ATREP10     repbase; DNA   ; ATH   ; 901 BP.
XX
AC   .
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATREP10 repeat - a consensus.
XX
KW   non-classified repeat; ATREP superfamily; ATREP10.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-901
RA   Kapitonov V., Jurka J.;
RT   "ATREP10.";
RL   Direct Submission to Repbase Update (00-APR-1999).
XX
CC   [1] (Consensus)
XX
CC   ATREP10 individual copies are 96% identical to the consensus sequence.
CC   Multiple diagnostic positions indicate the existence of several
CC   ATREP10
CC   subfamilies.
CC   ATREP10 shares common structural features with elements from ATREP
CC   superfamily;
CC   ATREP elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
SQ   Sequence 901 BP; 303 A; 111 C; 140 G; 346 T; 1 others;
     atcttattat ataaagtatg gttttcaaag ttgctaactc ataggatcgt gccacgtgtc        60
     aagtcaaacg atcagatgtt tacatgtgtc attcaaaatt taactttttt attctctaaa       120
     aaaatagaaa atcttaaaaa gtaaacaaat ttacatatac taatttatat gtctatatat       180
     ttataaacaa ttaacattta ttcaacaaaa ggaaaattaa caaatttgtc tttaactcat       240
     gtaatcataa gtgaaaatag aacattttga gaaaaatagc ttagcttata ggatttaact       300
     tttcaattat tttcatttat taattttaac tcatttaata ttaatttgca tgatgtaaaa       360
     ttaacttacg agattacggc atatatagaa aatatatttt caacaatgtt tggtttctaa       420
     atatttttgt ggatttcttt ttttttatta attattagcc ctaggcgttt gggtattcgg       480
     atcgggtatt tcgggttcgg gttttcgggt ttagaagttt aggacccgtt cgggtaattt       540
     aagattttgg gtcgggttcg gtttgggttc gggttcgggt tcgagtttat ttatatattg       600
     aaatatcaaa ttttgtgtgc aaatctatta aattacttga aaatttcaaa aattyccaaa       660
     acaacacgag tagttttgct tgaatatatc taaaaataca caaaaataac taaaatatcc       720
     aaaaaaatcc taatattttc tatatataag tataaatata actaatatat acttatattt       780
     gagatatgtt tggataccta ttcgggttcg ggttcgagtt tttcgggttt tgaagtttag       840
     acccgttcga gtatttgaaa atttcgggta cacccgccta aataggcggg ccttatctag       900
     t                                                                       901
//
ID   VANDAL9     repbase; DNA   ; ATH   ; 12396 BP.
XX
AC   .
XX
DT   22-MAR-2000 (Rel. 5.02, Created)
DT   22-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   Autonomous DNA transposon VANDAL9 - a consensus.
XX
KW   MuDR; DNA transposon; Interspersed Repeat; Autonomous DNA transposon;
KW   MuDR-like transposase; VANDAL9.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-12396
RA   Kapitonov V.V., Jurka J.;
RT   "VANDAL9.";
RL   Direct Submission to Repbase Update (00-MAR-2000).
XX
CC   [1] (Consensus)
XX
CC   VANDAL9 is an autonomous DNA transposon. It generates
CC   9 bp duplications of AT-rich target sites upon integration
CC   of its copies in the genome.
CC   There are 2 copies of VANDAL9, 95% identical to each other,
CC   we found in chromosomes I and II (AC005561 53629<-42112 and
CC   AC021198 44375->56770). These copies are flanked by 9 bp duplications
CC   of different target sites, AATAATTTA and TATAARTTA, respectively.
CC   VANDAL9 encode two proteins.
CC   The first protein is a 998-aa VANDAL-like DNA transposase, distantly
CC   related to the MuDR transposase. It is encoded by ten putative
CC   exons:
CC   CDS 546..1029
CC   CDS 1127..1270
CC   CDS 1302..1760
CC   CDS 1923..2102
CC   CDS 2259..2668
CC   CDS 2698..3126
CC   CDS 3229..3708
CC   CDS 3771..4037
CC   CDS 4091..4167
CC   CDS 4258..4324
CC   The first protein:
CC   MAFVVRLVPGEWKKDENGYFEHVSHADGFALGVRLREQDGFAKVVMAVKEKLALGAEDDI
CC   ELTYQWPQWMMGPDWRRANPIDILDDEDMTLFMAIRADLDEVHPRVKIIRGGNSRNVNSY
CC   RSNLDIGGLTLEEISDKYWNSAETRAVWGTALTRMLLRNISAHILSPITYLYATIYLIQV
CC   TVMDWQPWERTTAWAYRKAMTNETLMGGGAGTSGVPLTDTEPDSIPISKGKEKVTDDDER
CC   ERDRLFEMWRTQQQEEMWREMCATQMTLGATQIDATNVGDTGKTARALNFGSGDIFKGNP
CC   REDLQLTLARAETQEVCTQVVALSSSDSTFGMPTSLSTSVSFSSDDLMDVTDSSNNNSSS
CC   CIDKGKGIMIDERITTKEIGAGSTNTRVSEVLRNELMVKDTPVPTVLYDRDAPPYFDDPE
CC   KEDALHRALKYADNEGDDIYIGRIFKSKEDCATKLAIHAIHWKFHFIYAKSGPNIVAAVC
CC   VSDTCPWRVYATKLPDSDWFEVRSTTQTHTCSVDARGDFHKQASTVVIGKLMRTKYIGVG
CC   RGPRANELRRMLRQEFSLNEIAMDNALGSVMGSYALIQPYFKCLLETNPNSLVAMETEKD
CC   NSGVERFKYLFFALDACVQGYAYMRKVIVIDGTHLRGRYGGCLVAASAQDANFQVFPIAF
CC   GIVNSKNDEAWTWFMTKLTEALPDDPELVFASDRHNSITPASVYPMSSHAACVVHLKRNI
CC   EAYFKYEQVGSLVSSAARAYRLTDFNRIFVEVRAKHGPCADYLEGIGFEHWTRSHFVGNM
CC   YNVMTSNIVESLNNMLTMARDYPIISILESIRTTLVTLFALRRQAARSEDNILSSKVHDM
CC   LIENYEKGAGCVVLKIGDGLYEGVPAPNYPLLTCHIGGYRRRAPRGHDGWSPSHDPRLRL
CC   SYQALIIPVPDTETLTPSPNDVGGGKLAPPYVRRPPGRPRKRRLFSKGEFKDVTIASICS
CC   EHQEKDAHNASYWDITGDRRNYGSRTFFGAESDGCCQD
CC   The second protein is encoded by 18 putative exons:
CC   CDS 	 11917..11312
CC   CDS 	 11231..11049
CC   CDS 	 10828..10151
CC   CDS 	 9885..9820
CC   CDS 	 9528..9463
CC   CDS 	 9386..9321
CC   CDS 	 8971..8906
CC   CDS 	 8806..8732
CC   CDS 	 8616..8551
CC   CDS 	 8435..8379
CC   CDS 	 8292..8227
CC   CDS 	 8145..8086
CC   CDS 	 7990..7925
CC   CDS	 7429..7382
CC   CDS	 7291..7247
CC   CDS	 7044..6997
CC   CDS	 6768..6710
CC   CDS	 6612..6528
CC   CDS	 6438..5944
CC   The second protein:
CC   MAPIPLPPRLIALGEEPRGERVNVYQKMKTLYGIFNALDDDERQYLSRSPFARLLEFPNN
CC   HAWSASFGIFILGRQLEVTKPNEIWVLFAGTPIRFSLREFKIVTGLPSGRYPSLKMKKKK
CC   GTAGKTIPFNSKLFGLEEDVTVDRVITMLKRRVVSDPGMRIRCACFAIVDGFLVPISHYP
CC   KIIKSHAEMVEDVDAFLAYPWGGLLYALQLVVLQAAPAIQDSPVIDNPIDSDSEGAEDDV
CC   EVATRESVPFKLRNAKELDEKCSIRVASIICPDYVLDPAEDLSWSDDEEDERVENLLMLV
CC   NKGLIFKNDMFDGGCFPSQIQLASKKQKRGAKSNATRNRKGAKTSKNHGGVRSKPRRHTP
CC   EEVGSSEAVSMDAISRMLDAKLEAHSKTIISAVTDWLTKNTIIEGDHLKDPDSGVNHPKE
CC   TAPAGNVGASNTGDLGSNATNDEFGFNSLRTNSRSHCPERTSNVEASVDEILSFYNYNVS
CC   SGAGYKEAEGTNNVSDDVDSPLHSDHEDNSDGDNNVATGSIPPPQAVSRDNTECGNNTPN
CC   DEDFPSEPSMVHDSEGDNNLSIGASPSPKVVSEVNAQVSNGDAVEDDLSPGRDVNVEADV
CC   NERHDISPVTGAVTSPKLSGDNVEVQCSQLTTTNVDTLTNEVERPENTPANLAVSSPNHS
CC   VDNEECSQQAAHDVDLLGNECEESQGVPVVGVDSVSNEMSAELPDIVVPIPDVSADLPVT
CC   TVPAFCRGAPSAVSSPRQDFTTPPPSKEAMPPLQVNVDPEERFQNSMKKLKAISSISICG
CC   GIALSNKDILDLIDRKKNLTSKVMDALIRFSRHLLRTDDVDGEKLRLKVLDLKFVSLLYR
CC   QFTKFSRCNSKTEFQFPLPLIDILSGVGESDSVQLFTEADYIYLPFNFDKKHWVALAVDL
CC   KCRKIIVLDSNIQSRKDSAIHDVLMPLAVMLAYLFKQATFNPLMSQFLLDPFTIEPFCHS
CC   TGNFAS.
XX
SQ   Sequence 12396 BP; 4276 A; 2401 C; 2435 G; 3284 T; 0 others;
     gggttatatt aattcctatg ctcagaagat tggtaaatta agtaactatg cataaaaaca        60
     gagaaataaa atctcactcc tctgccacaa acgattctgc cgaaattacc cctaccaaat       120
     caaaatagcg tagcctctga taacagttta gagagtagac gcggctgcat ttaatgccca       180
     agatataacc gaagattttc tcagccgacc ttggaaacat aaaatatatt catcatcatg       240
     tcggatattt atggggttgc gagatatcac ttatacacgt tggtgtattt attagcagta       300
     tactctcttc tttgcatcaa agaaaaacct accagactaa agaccttagt ctccgacaaa       360
     attaatgcga aaggagctaa acacccagag aattcgagat tgaaaggtaa aagtaaaata       420
     atagagtcat acgtatatta ttgttaagtt ccgtaagagt gatttttact ttagggtttc       480
     atattaattg aaataaacgg atactaacaa gtttgttact gcgaatattg gcccagcagg       540
     tgtaaatggc gttcgtggtc agactagtac ctggggaatg gaaaaaagat gagaacggct       600
     atttcgaaca cgtttcacat gccgatggat ttgcgttagg agtccgattg cgagagcagg       660
     atgggtttgc taaagttgtt atggcggtaa aggaaaagtt agcgctgggt gccgaagacg       720
     atatcgagtt aacatatcaa tggccacagt ggatgatggg tcctgactgg agacgcgcta       780
     acccgatcga tatattggac gatgaggata tgacactgtt tatggcaata cgggcagatc       840
     tagatgaagt gcatccacgg gtgaagataa tacgaggagg gaatagtcga aacgttaata       900
     gttatcggag taacctggat ataggcggtc tgactttgga agaaatttcg gataagtact       960
     ggaatagcgc ggaaacaaga gctgtttggg gtacggcgtt aacaagaatg ttgctgcgaa      1020
     acatatcagg tgaaaaccaa aacctatgtt gttcgctata ttgtagtaaa tttatttgtt      1080
     aatatataaa tcggataact ttgcttatat cagggttgat ttacagctca tatacttagt      1140
     ccgataactt atttatatgc taccatatat cttatccagg tgacggtgat ggactggcag      1200
     ccatgggaaa ggacaacagc atgggcgtac agaaaggcaa tgaccaacga aacgcttatg      1260
     gggggggggg gttatcataa gagacaacgt cgagattaca gctgggacaa gcggtgtgcc      1320
     actaacagac acagaaccag actccattcc aatctctaaa ggaaaagaga aagttactga      1380
     tgatgatgag agagaacggg atcgtttgtt tgagatgtgg cgaactcaac aacaggaaga      1440
     aatgtggcga gagatgtgtg caacacaaat gaccctagga gcaactcaaa ttgacgcaac      1500
     aaacgtgggc gacactggta aaactgctag agctcttaac ttcggaagtg gcgacatttt      1560
     caagggcaat ccacgtgagg acttgcaact cactctagca agagcagaaa cacaagaagt      1620
     ttgcacccaa gtggtggcac tgtcatcaag cgattcaacc ttcggaatgc caacctcgct      1680
     ttccacaagc gtatctttct ctagcgatga cctaatggac gtcactgact catccaacaa      1740
     caacagctca tcgtgcatag gttggttatc tgatatttaa tatgttatcg ccgatagcat      1800
     aatactatta ccattcgttc acggtttctg acttttgact ataggtgacg aaacactgtc      1860
     acacttttat tctgaacttg atggcccact cattatggcc ccatagcccg tcggaataac      1920
     agataaggga aaaggtatca tgatagacga acgaataacc actaaggaga taggtgcggg      1980
     ttcaaccaat acaagagtat cggaggtact gaggaatgag ttaatggtga aagatacacc      2040
     ggttccgacg gtgttgtacg atagagatgc cccaccatat tttgacgacc cagagaaaga      2100
     aggtaaagca tacctatata gcaattttga taaataaaaa aaaaactaat tagctctgta      2160
     ttatatatag ctaatcatgt tcgataagta attgtttaac tcgataacta aacatcttcg      2220
     ctaaaagtat taacagctat gttttctctt cctcgcagat gctcttcatc gtgccctaaa      2280
     atatgctgat aatgagggag atgatatcta cattggtcgg atttttaaaa gcaaagagga      2340
     ctgcgccacg aaactagcaa tccacgcaat tcactggaag ttccatttta tctacgcgaa      2400
     atcaggaccg aacatcgtgg cggctgtctg cgtcagcgac acatgtccat ggcgggttta      2460
     tgctactaag ctgccagata gcgactggtt cgaggtcagg agcaccaccc aaacccatac      2520
     atgtagcgtg gatgcaagag gagacttcca caagcaggcg tcgacggtag ttattggcaa      2580
     gttgatgcgt actaagtata ttggagtagg acgggggcct cgcgccaatg agctgagaag      2640
     aatgctacgc caagagttca gcctcaacgt ttcctattgg aaagcatggc gggccaggaa      2700
     attgccatgg acaatgcttt agggtctgtc atgggaagtt acgccctaat ccaaccttac      2760
     ttcaagtgtc ttttagagac aaatccaaat tctttggttg caatggagac cgaaaaagat      2820
     aactctggcg tagagaggtt caaatacttg ttctttgcgc ttgatgcttg tgttcaaggg      2880
     tatgcttaca tgaggaaagt cattgtaatt gatggaactc acttacgagg acgatatggc      2940
     ggatgcttag ttgcagctag tgcacaagac gcaaattttc aggtcttccc gattgcattt      3000
     gggatagtaa acagcaaaaa cgatgaggcg tggacctggt tcatgactaa gttgacagaa      3060
     gcgttaccag atgatccgga gttggtgttt gcgtctgata gacacaactc aattacgcca      3120
     gcatccgtaa ggtaacatgg taacacataa tgtatctcat actaattaag ttagtcacta      3180
     atataccatg ttttaaaaaa aatcacatcc tgcctaaaca ttatgcaggt ttaccccatg      3240
     tcatctcatg ctgcttgcgt cgtacatctg aaaaggaaca ttgaggcgta ctttaaatat      3300
     gaacaggtag gttctttggt atccagtgca gctagagctt atcgactaac tgacttcaat      3360
     aggatatttg ttgaagttcg agctaagcat ggaccgtgcg cagactactt ggaaggtatc      3420
     gggttcgagc attggacaag gtcccatttt gttgggaata tgtataacgt catgacaagt      3480
     aatattgtgg agtcgctaaa caatatgtta actatggctc gagattaccc gataatttct      3540
     atattagagt caattcgcac cacactcgta acattgtttg cgcttaggag gcaagctgcc      3600
     agaagtgagg ataatatctt atcgtctaag gtgcacgata tgctaatcga gaattacgag      3660
     aaaggagctg gatgtgttgt gctaaagatt ggggatgggc tatatgaggt tagagaaaag      3720
     agaggctcaa catttgcagt taacctatgg gagagaacgt gtacgtgcag ggagttccag      3780
     ctcctaacta tcccctgctc acatgccata tcggcggcta tagaagaagg gctccgcgtg      3840
     gacacgatgg ttggagtcca tcacacgacc cccggcttag attgtcatac caagcactca      3900
     taataccggt acccgacacg gaaacgctga ctccttcacc aaatgatgta ggaggtggaa      3960
     aattggctcc accgtatgtg cgccgaccgc ctgggcgacc aaggaaacgg agattattct      4020
     caaaaggaga attcaaggta acatatttga cgtcaaagct aataaaatat ttatatggta      4080
     atactattag gatgtaacca tcgcttccat ttgtagcgag catcaagaaa aagatgctca      4140
     caatgcaagt tattgggaca taacagggta acctgcaatg gaccagtacc ggtatgtcaa      4200
     atattttctg ttaatgacta tattatggaa tatttatatg atctgttttg agtgtaggga      4260
     ccgtagaaac tatggttcaa ggacgttttt tggcgcggaa agtgatggat gctgccagga      4320
     ttaataagaa atgccctgga gatgtgtata aataaggaac cttaagcgat cagaaatttt      4380
     aaatgtgtat acgtacggct attgatcgct aaatgtaata ttatcggaac tcatccactt      4440
     ttcaagtaga aatgttaaat tataatgtca tattttatct acccaaacag atattctgat      4500
     aaacaaagta gtagccccta attcttagat attcgatgac tcagtgctaa atagttatga      4560
     tatgctgtta aacactaagt tattaggaaa agaaattgac attggggtta aacataagga      4620
     tgacctaatc ttcaaataca tagtacgata aaacaataat agcatagtta tcttctattg      4680
     gtgtttatag aaaaatctaa taggaacgta cgaattgcaa aaagataaat tttataatag      4740
     cataatagac tagttatccg ctaatattgt taggaacgta cgaattacaa aaagataaat      4800
     tttataaaat aggaacataa acatataatt tgatagatcc tgttaacctg gttaatctct      4860
     atattttcta acaagataaa cagtataagc gatcaagatg ctaatattgt tacctcaata      4920
     tgatgtttac gatgccaact aaataaatag ttaggatata cctaacaagc tgaacagtta      4980
     tccagattag tcgtgaaagc agaatggctt gtcagcgacg atccattaca aacgatatat      5040
     atgctaatat tgttaatttg ataagattgt tacgttgaca gctaaattaa tagttaccct      5100
     aagcatggtt cagctgccgt tagttttagg atattctttt atccgctacg atcgttacca      5160
     gataaaactc atgccatctc catctttccg tacacgccta ataaaataga gcagaatggc      5220
     gtctcagcga ctatccatta caaacgatat atatgctaat attgttaatt tgataagatt      5280
     gttaagttga cagctaaatt aatagttatc cagtttagtc gggaaagcaa aatggcttgt      5340
     cagtgactat ccattacaaa cgatatatat gctaatatta ttaatttgat aagattgtta      5400
     cgttgagagt taaattaata gttaacctaa gcatggccca actgccgtta gttttaggat      5460
     attcttttat ctactacgat cgttaccaga taaaactcat gacaactctc tctttccgta      5520
     cactcctaat aaaatattaa aaaaatcaga ctcagcaacc ggtaatgaaa taaatcgtga      5580
     taatcttgct aatagtcagc taaactgata tccacttacg gttgttagca agataaaaaa      5640
     ttgataacca gacaaacatt tcagaaactt aattacaaga caaatgtagc gaaagcgttt      5700
     ggagattatc ttagttaatc tcaacaaaga gtttaagata catgattcga ggcgagaaca      5760
     taaacacacg cggataaaag agtattcgtt aacacaacgg ttatctagta accgcgagct      5820
     aggattaaag ctgagactag cttcttcact tcactttgta ggccgccaac atcaaaatcc      5880
     acacattcag gtacaccccc ggtagcatgc gtgcgtatga gaaatataga gaatatgcct      5940
     gtgtcaagag gcgaagttac ctgtggaatg acagaagggc tctatagtaa atggatctag      6000
     aagaaattga ctcataagag gattgaaggt tgcttgtttg aaaagatatg ccagcattac      6060
     tgcgagaggc ataagcacat catgaatggc agaatccttg cggctttgga tattcgaatc      6120
     caagacaatg attttccggc attttagatc aacagctaaa gcaacccagt gttttttgtc      6180
     gaagttaaaa ggtagatata tgtaatcagc ctccgtgaat aactgcacac tgtcagattc      6240
     gccaacgccg gagagaatat caattagagg taaagggaat tggaactccg tttttgagtt      6300
     gcatcgggaa aacttcgtga attgccggta gagcaatgaa acaaatttca aatcaagaac      6360
     tttgagacga agtttttcgc cgtccacatc atcagtacgc aacaggtgac gactaaatct      6420
     gatgagagca tccattacct gtgggcacaa gtaaaacacg aaaaaattaa gtaaatgaga      6480
     aaaaacaatt taaaattaaa tgcgcatata tatgacagac ataatacctt ggaagtcaga      6540
     tttttcttgc ggtcaattaa gtccaaaatg tctttattag atagagcaat cccaccacaa      6600
     atgctaatag aactgtaaag aaaacaagct gaaagattac ccttggaaat aattaaaaat      6660
     aacaaaacat gtattgacta aacaattaaa aaaacaggat aaaacaaacc ttatcgcctt      6720
     gagtttcttc attgagtttt ggaatcgctc ctcagggtcg acgttgacct gattaataac      6780
     aggggatgga tgccaactaa caatttcgtt ttcttgtcgt actggaaccg accatctaac      6840
     ttgctagaga gagttcggag ccttttactt cttctcccac gcatactctc gacattatca      6900
     acatttccat agttctgttt gccaagtagt taaaatgtaa aatataaaaa cagagctcca      6960
     tgagctaaag taaaaaaaaa aaaagaagtt aaatgcctgg agggggggca tcgcttcttt      7020
     agaagggggt ggagttgtga aatcctgaaa tgggatacat taataaaaaa cctaatcgat      7080
     caccaaagaa ttaacagcgc aaccactacg aattacctca tctgaatcct gcgcaaacca      7140
     accactgcgc atggacgaac gattacaaat tgaaaattta catgagagaa atttaactca      7200
     gtaacaatat gattagcaga caaggaaata aaataaaata aataacctgg cggggagatg      7260
     aaacagcaga aggggcaccc ctgcaaaaag cctattaaaa ccaaaacaaa agcgaaagtt      7320
     atcgattgac aacgaatgat gaattagtta tatctgatac taataatgtt atcaaactaa      7380
     ccgggacagt ggttactggt agatcggccg acacatcagg gatagggacc taattagagt      7440
     tttgtataaa acaagatgac cacatccggg ataaaagatg gtccgcttga aaactattat      7500
     ggacattctt aataaccact aactaaactt cactccaaaa agataacgac aaagattgta      7560
     ttggagacaa agggtagtca tataaaaaca atgtaataat ggattgactt taatagtata      7620
     attagtgcga taaacttttt ttttttaggc caatcagtta gtacgataaa cttattactt      7680
     aatttaggtc ggttagtgtg aagagatcaa taatcaatat tttattttaa tcttcaaaag      7740
     atattaggat taatatttta aagaacaaaa aaaaaggttg aaaacaaact aaaaaaccga      7800
     tggtaattta ggacctaata agttatcacg ccaaacattt atccttacag aaagagaaga      7860
     agttgatttg gaaacaagtt ctaaagacaa tatatcaaat attgatggta atttagctgc      7920
     taaccactat atctggcaac tccgcagaca tctcgttgct aaccgaatcg acgccaacca      7980
     cggggacacc ctacagaacg aaaattcaat agaatgaggt caaatataca aaaaaaattt      8040
     gaaaactagt caacccgact aggataatat aaagggatct aatacctggc tttcttcgca      8100
     ttcattaccc aaaaggtcaa catcgtgtgc tgcctgctgg gaacactgaa actagaacaa      8160
     gaaacagtta ataactaaat tatatcaata agatggcaat tattccgcta acgaataact      8220
     gctaacctct tcattatcaa ccgaatgatt aggagatgaa actgctagat tggctggtgt      8280
     attctcaggc cgcttaaatt aaaaaagaaa aaagattatt tgaaactgcc aatatggaga      8340
     atctggctag gaaaaaatag atataatacc acgctaacct ctacttcatt tgtcaaggta      8400
     tccacattgg ttgttgtcag ctgagagcac tggacctgga attatcattt tgaagggcac      8460
     ttaaaattat actaaaaaca tgtaacggta acacaactaa cttaatacga taaaagtata      8520
     atgatttcga taatatggat aacagctaac ctccacatta tcgcccgaaa gtttgggaga      8580
     agtgactgct ccagttacag ggctaatatc atgccgcttt aaataaaaaa taaaaaaata      8640
     aagttacaaa caacgctaac acaacgatga caaaactcac caaatctgga ggagaaaaaa      8700
     atagaaacca atatttgatt aataatctaa cctcgttaac atccgcttcc acattaacat      8760
     cccgtccggg ggagaggtca tcctcgacgg cgtcgccgtt agagacctac cgacaattac      8820
     agcaattaca aaaaatcgtg acaaatggag aaaaaatgtg acacattatg atatttatta      8880
     acccataatc aaactatctg ctaacctgtg cgttaacttc agaaacaacc tttggtgatg      8940
     gactagcacc aatcgataaa ttgttatcac cctaacaacc caattacaga aattatttgt      9000
     taacacgaaa aaaatgcaaa aaaggtatac tagtgacaca tgtatacgag tttaaactaa      9060
     actaatcaga tacaatgttg aatcagtatg ataattgtta acccataatc aaaatatctg      9120
     ctaacctagg tgttatcttc ggaaacagcc tatggtggtg gaatagcatc ggacgctaca      9180
     ttgttatcac cctaccaaat ccattaccaa attatttgtt aacccgaaac aaaacatgta      9240
     gtccttaaca tctaacttat aggaataaga atactatgat ggttagctac gctgagccgt      9300
     atttttcgga aatatctcac ctcggaatca tggaccatac tgggttcaga ggggaaatct      9360
     tcatcattag gagtattgtt cccgcactat agcaaaacca aaaccaattc agacggcgag      9420
     cggtataata attgttaacc cataatccat atatctgcta acctcagtgt tatctctgga      9480
     aacagcttgt ggaggtggaa tagaaccggt agctacatta ttatcaccct accaaaccaa      9540
     ttatcgaaaa ttatttgata atcccaaaaa aatcatgtag tccttaacaa ctaacttaca      9600
     acaataagaa cgctatgatg gttaactacg atgagcagta actttcggac atagctcacc      9660
     taggaatcat ggaccagact gggttcggag ggaagatcta catcaattgg agcattgttc      9720
     ccgcgctata gcgaaacaca aaaccatttc agacagcaaa acacttaaac ataattacaa      9780
     taacttattg attgctaaga agttttaatt aacactaaca tcagaattat cttcatggtc      9840
     agaatgtaga ggagagtcaa catcatctga aacattgtta gttccctaca aaacaatata      9900
     tcagaatgtt tgttacacag cacgcaagta ttatctaaga acactaacta ctaaactata      9960
     agttagctta atcaagtaaa tcaatataca ccacgctcac ctgctgatta tggacaccgt     10020
     cgccctcaga tcgaatatct tcatccatag gaataacttc ttcatgttac accgcgacag     10080
     aaaagaagga aataaggaaa aaattaataa accagcagga acctgaacag cttagaaaac     10140
     gagatattac ctccgcctcc ttgtaaccag caccacttga gacattataa ttatagaaag     10200
     ataaaatttc atccacactt gcctcaacat tagaagttct ttcagggcaa tgagaacgtg     10260
     aattggttcg gagagaatta aaaccaaatt catcattagt tgcgttagac cccaaatcac     10320
     cagtatttga tgcaccgaca ttaccagcag gagcagtctc tttcgggtga tttaccccac     10380
     tgtcaggatc cttcaagtga tcaccttcaa ttatagtgtt ttttgttaac caatcagtca     10440
     ccgccgaaat gattgttttc gaatgagctt caagcttcgc atccagcata cgggaaatag     10500
     catccataga aacagcctca gaactcccaa cctcctcagg tgtgtgtctt cgaggtttgg     10560
     accgaacccc accatggttc ttagatgttt tggctccttt cctattccga gtagcattag     10620
     acttagcccc acgcttttgc tttttagatg ccaattggat ctgggatggg aaacatccac     10680
     cgtcaaacat gtcgttcttg aaaatcaaac ccttgttaac caacatgaga agattttcaa     10740
     ccctctcatc ctcctcatcg tctgaccacg acaaatcttc cgccggatcc aacacataat     10800
     caggacaaat gattgaagca acacgaatct gcaaaacaag agaaaacaac atccgatgag     10860
     tatgttaaca taatagactt agtgactact gatctgatta tcttgtatac tctgttaacg     10920
     tttatcaata ttaacggata agttatataa taggacctga taagactaaa aaaagactta     10980
     gaaaataatg atcagcttat tgtctctaat cagataacag ttaaaaggtt agcggataaa     11040
     agcattaccg aacacttctc atccaactcc ttcgcattcc taagtttgaa ggggactgac     11100
     tctcgggtgg ccacttcaac atcgtcttcg gcaccttccg aatcggaatc aatagggttg     11160
     tcgataacag gactatcttg aatggctgga gcagcttgta aaacgaccaa ttgcaaagca     11220
     tacaacaatc cctgaacaac aaaacacgta cttgccaatt gtttgatttc tctctctttt     11280
     atcgacttaa tcatcatctc aaacgtgtaa cgccccaagg ataagcaaga aaggcatcca     11340
     catcttcaac catttcggcg tgggatttaa taatcttggg atagtgagat atagggacaa     11400
     gaaacccatc aacaatggca aagcaagcac atcggatcct cataccagga tctgaaacaa     11460
     ccctcctctt caacattgta ataaccctat caacggttac atcctcctca aggccaaaca     11520
     acttactgtt gaaaggaatc gtctttcccg cagtgccttt tttcttcttc atcttcaaac     11580
     tcggatacct accagagggc aatccagtga cgatcttgaa ctccctcaga gaaaaccgaa     11640
     taggtgtacc ggcgaataga acccaaatct cattaggctt agtcacctcc aactgcctac     11700
     ccaaaataaa aatcccaaaa ctagcagacc aagcatgatt gttggggaac tccaacagtc     11760
     tagcgaaagg agaccgagaa aggtattgcc gttcatcgtc atcgagagcg ttgaatatac     11820
     cgtagagggt tttcatcttc tggtaaacat taaccctttc accacgaggt tcttcgccga     11880
     gagctattaa ccggggagga agtggaatcg gagccatcgt ctacacaaag taaaaaaccc     11940
     tagtaagaca cagcgagata aaacaaatga agaaacaaaa tcaaagagag gagactcaaa     12000
     tcaattaccc aaaacgaatg aagaaccctc ggatcggaag gaaatgatat cgattgacaa     12060
     tcaacccaga taacacaaga aatttttaag acaagggtta tgttcttccg cctcaatcgc     12120
     agtctttctc cttcatatag taatgaaagc acacgactgt tcgttagcag gagagaagaa     12180
     aacatattaa aaaaaaaaac ataactcccg aacacaatat cccaataaaa tcttagagtc     12240
     ctacaacatg caataattcg cctatactct acaactgact aaaacgataa cgtaggggta     12300
     catgcgtaaa aagttatgtt aacagtgtta gggtaatagt gaatttcgaa gggatctaaa     12360
     taacaagttt tctatgcata tggaatgata tttctc                               12396
//
ID   ATENSPM8    repbase; DNA   ; ATH   ; 2375 BP.
XX
AC   AC006419;
XX
DT   29-JAN-2001 (Rel. 6, Created)
DT   29-JAN-2001 (Rel. 6, Last updated, Version 1)
XX
DE   ATENSPM8 is a fossilized DNA transposon.
XX
KW   EnSpm; DNA transposon; Interspersed Repeat; TIR; transposase;
KW   En/Spm superfamily; ATENSPM8.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2375
RA   Kapitonov V.V., Jurka J.;
RT   "ATENSPM8.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
DR   GenBank; AC006419; Positions   52302   55160.
XX
CC   ATENSPM8 is a fossilized DNA transposon from En/Spm superfamily.
CC   It is present as a single copy inserted into VANDAL3-like
CC   transposon and flanked by 3-bp target-site duplication.
CC   ATENSPM8 has 13-bp terminal inverted repeats and encodes
CC   an incomplete En/Spm-like transposase, ATENSPM8p.
CC   ATENSPM8 harbors a non-autonomous derivative of the ATHPOGO
CC   transposon, which is cut from the sequence reported here.
XX
FT   CDS           0..0
FT                 /product="ATENSPM8p"
FT                 /translation="MENEGQVQGVALGVVGILNLSRLNGTLWFKRDSVIT
FT                 KKAKERSKKASKSRMSGRNGLGPHKHRARSRSYAKVGDLLKEKTENASYI
FT                 DGSFVDERAKQISEGFEKNIVEATNGRVFGLGALLSEFSLKCGVSAILEN
FT                 HVENEQTLKQQLEEIYQENLKIKERLTKLEGLEKMLELMFPHLSSNGVNN
FT                 "
XX
SQ   Sequence 2375 BP; 845 A; 318 C; 383 G; 829 T; 0 others;
     cactacaaga aaacagtgtt catgtgggaa aaagaaatta atgttcccgc ctctctcttc        60
     cggcttgtta tattgttttc gataatacta tcaagatttg gccaaatcta ctaatatttt       120
     gtaatatcaa atagacgatt ttatttttcc aacttatata tatagtttaa ggatgagctt       180
     ctatcataca acacgttagc aagcaacata ctatatctga aggtaaacac agttttttac       240
     taaccaattt tgttatagga tctaatttgg aatatagttt ttattgttaa gtcgtatacg       300
     tttggttttt agtaccgact ttgttatttt taattaaaaa aaacatttaa atgaatccaa       360
     tggaaaatga aggtcaagtt caaggagtcg ctctgggtgt tgtaggtatt cttaatctat       420
     caagactcaa tggaacgttg tggtaagaag aaatataaat attttaaaaa atttatttac       480
     catcatttgg gtaattattt taattttatt tgcaggttca aacgtgattc tgtaatcacc       540
     agtgagataa gaacagataa gaacaataat tcgatatgag tttcttggtg catatcaaaa       600
     ttattcaaca acactgatac ttgtgaaaga gagatggttt aacacattta agataatggt       660
     atttggtatt ttttttgttt tatatacatt tagttagcat aagtaacaat attatagagc       720
     ctctttattt tctatataca taaaattata ttaatatttt gatatatctt gtagaggaaa       780
     ttcgattggc atccaacaat tgaattagag gtaaaaaaca tgtttcacaa aatgtgctgc       840
     aactaagcta atcgatttga ttagccgggt tcgtgaaagg ggcaaacagc catattagat       900
     ccttaatgat caataccaat ttttcgttaa gtattgggga acagaaaaag ctaaggagag       960
     aagcaaaaaa gcttctaaga gccggatgtc tggccgaaat ggtttgggac ctcataagca      1020
     tcgagcgcgt tcacgttcat atgccaaagt tggtgatctt ttagtaagtg aaactagttt      1080
     ttcttaagaa aaaaaaaata aaataaattc tggctattat tgttttgttt atattttgta      1140
     gaaagaaaag acggaaaatg catcatacat agatggatca tttgttgatg agagggcaaa      1200
     gcagattagt gagggatttg agaagaatgt agctgatctc cttgaagatg aaaaccacta      1260
     aatgaggagc taactcttgt aaaaaaaatg aaatgtattt aaaggtaaca taataatttc      1320
     cttaaacctt agactgattt tcaaatatta taagttggct tacaaacatt tttactatat      1380
     actacagatt gtggaggcaa caaacggtcg tgtgttcggt ctaggagctc ttcttagtga      1440
     attctcactc aaatgtggag tttcagctat cttggaaaat cacgtggaaa atgagcagac      1500
     tttgaaacaa caattggaag agatttatca agaaaatctt aaaatcaaag agaggctcac      1560
     caagcttgaa gggttggaga aaatgctcga gctaatgttc cctcatctat cctctaatgg      1620
     tgtcaacaac taagcattca attagttgtt ttagttatgc tttttggtta ttttcaacta      1680
     ttttttttat ttctgcattg ctggaatagt tcaatattaa attatttaat aaaatatgtt      1740
     ttttctttta ctgttttctt atcaaaatct attttttatc ttaaaaatta ttatttaaac      1800
     aattgtaatt tactaactat tttgtcaaac aaaacaaaca aaaaagtaaa atacaatgat      1860
     aaaaattaat gtaccaaaat aactgcaatc ttacaaatat acaatggaac tgcgactata      1920
     catttctcgt aataatacga caaagataat ttgtagtaat catacttact acaatttttg      1980
     ttttgattat cgttataaaa tatatgcaac aaccttatgt ggaaaaataa ttactgcaaa      2040
     tttgcaacaa tattttctta tacattgtaa atttgcaatg atatttgcta tacattttat      2100
     gtggcaatag gttgtaacaa tttaagttgc aaacgtacgt gacaattgta cgacaaaata      2160
     actacaacaa aaatgttgca tttatacgac atatatagca aaaagctagt tcattgtaaa      2220
     ttttgtaaca tatgtgtaat aactataaat ttgcaatgtc caaaatgcaa aaatgcaaaa      2280
     tgtgtctcaa ttttgttgta atctcacgat ctgcaacggt ttgatgaatt actgcaacta      2340
     tattattgtg gtattatccc ttttttcttg tagtg                                 2375
//
ID   ATHAT7      repbase; DNA   ; ATH   ; 3500 BP.
XX
AC   .
XX
DT   01-FEB-2001 (Rel. 6.1, Created)
DT   01-FEB-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   ATHAT7 is a hAT-like autonomous DNA transposon - a consensus sequence.
XX
KW   hAT; DNA transposon; Interspersed Repeat; HAT superfamily;
KW   Autonomous DNA transposon; ATHAT7; ATHATN7.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-3500
RA   Kapitonov V.V., Jurka J.;
RT   "ATHAT7.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
CC   [1] (Consensus)
XX
CC   ATHAT7 is a recently active autonomous HAT-like DNA transposon.
CC   There are two copies of ATHAT7 present in the genome.
CC   They are 97% identical with each other.
CC   ATHAT7 has 14-bp terminal inverted repeats and encodes the
CC   750-aa ATHAT7p transposase. ATHAT7 copies are flanked by 8-bp
CC   target site duplication.
CC   DNA transposon ATHATN7 is a non-autonomous derivative of
CC   a transposon related closely to ATHAT7. The ATHAT7 and ATHATN7
CC   consensus sequences share ~80% identical ~180-bp 5' and
CC   3' termini, respectively.
CC   CDS join(604..2827).
XX
FT   CDS           0..0
FT                 /product="ATHAT7p"
FT                 /translation="MASNETLPPNDFDDVELSGNDDDDVVQHTPTSGNKR
FT                 KRKEKETGDEGDGGNSSKKKKTSSRSYVWDHFSRKKGNPNKCNCHYCGKE
FT                 LACPSKSGTSTLKKHLELSCKAFKAWKSTNTDQTQTVIGRDGGDGSLTMY
FT                 KVSELVIREASIEMLILGELPLSFIESVAWRHFCSKAKSYKPVSRRTTTR
FT                 EIVMLYVKKKVAMKKILGKSQERMSLTTDIWVSNNTGESYMVITAHFVDV
FT                 DWKLKKMIIGFKHVTDHNCGTICKVLLECLAEWDIRRIFCITVDNATANN
FT                 TALTKFKKTMKLIGDDALVLKGEYMHMRCDAHILNLVVKEGLTEVDASVT
FT                 SIRNGIQFVRSSTNRLKSFDLRCDAGTISRGSFPLDVKTRWNSTYLMLEQ
FT                 AVKFRIAFEKMEAEDKLYNDYYLEKVDGEKKIGPPMSSDWDAAERLIQIL
FT                 AIFYKSTLVLSGSTYVTSHKMYNEIINMARNLTTLNTDTFFDEQLKKKAI
FT                 AMLGKLKKYWDPFGEGVEMNRLVMVATVFDPRKKMKFVELCFGKMYGLGS
FT                 VEVVLLSDSVIQILKDLYDEYSRANLLRINGGSDSMPSSQSQGSWSQSQE
FT                 QDRSGAYERTINKTGIQLEDMENLFDEIVKETCIHKSSNELDLYLNEAVE
FT                 TPHLLMGIESDVLDWWKLNSGKFLVLSLIAKDIFAMQVSSVASESAFSTS
FT                 GRVLDPFRSCLTHYMIEVLMCTEQWLKSEISINEKGLSTIHELLADQVDE
FT                 DELMRGNLFPLNSL"
XX
SQ   Sequence 3500 BP; 1035 A; 591 C; 760 G; 1114 T; 0 others;
     taggcctggg cataataacc ggacccgata cccaaaccga tacccaaact gaaaaagctg        60
     ggttggggcg ggttagggta aaaggatatt acctcattgg gtttggtttt ggttaacccg       120
     tgggttcggg ttcgggtagg gtattactca ttacccattc cgggtaccca tacacccgat       180
     tcttgtgctt atatagatat ccctatatat catatataac ctatacacct atacaccact       240
     acttactttt tgtcgattca gttttcttca cgaatccctt gaatatcggc ttctcttgtt       300
     aaattctctt tgaaccatat tctatcaaac tggaaaccct tgtcgaaaca ctctcggcga       360
     cctcaccgtc accgacgatc ctgttaaacc caccacagac agctcaatcg cgaaatcatt       420
     ctaaggtaag tacgttcatg caatttcaat tctaggtttc gattattgat ctcaatctct       480
     gattagtttc aaactttcaa gtttcaattc tcgatttctc agttcctagt ttcgattgtt       540
     gtttgcttgt ttcaattcaa ttctcgattt ctcagttcct agctccgatt gttgtttatg       600
     tagatggcgt caaatgaaac tctacctcca aatgattttg atgatgttga attaagtgga       660
     aatgacgatg atgatgttgt tcaacatact cctacttctg gaaataagag gaagcgtaaa       720
     gagaaggaaa caggagatga aggtgatgga ggtaatagtt caaagaaaaa gaagacaagt       780
     agtcgatcct atgtttggga tcacttcagt agaaagaaag gtaatccaaa caagtgcaat       840
     tgtcattact gtgggaaaga gttggcttgt ccttccaagt ctggcacctc tactttgaaa       900
     aaacatttag aattgtcctg caaagcattc aaggcatgga aaagtactaa tacagaccaa       960
     actcaaactg ttattggtcg tgatggtggt gatggtagtc ttaccatgta caaggtctct      1020
     gaattagtca ttagagaagc ttctattgag atgctgattt taggcgaatt accattatct      1080
     ttcatagaga gtgtggcttg gagacatttc tgttctaaag ctaaatcgta taagcctgtt      1140
     tctcggagaa caactacaag agaaattgtg atgctttatg tcaagaagaa agtggctatg      1200
     aagaagattc tagggaagag ccaggagagg atgtcactga ctacagacat ttgggtttca      1260
     aacaatactg gagagagtta tatggtaata acagctcatt ttgttgatgt tgattggaag      1320
     ttaaagaaga tgataatcgg attcaagcat gttactgatc ataattgtgg aactatttgc      1380
     aaggttcttc tggaatgttt ggctgagtgg gatataagga gaatcttttg tatcacagtg      1440
     gataatgcta cagctaacaa cactgcattg actaaattca agaaaacgat gaagctgatt      1500
     ggggatgatg cattggtact gaaaggggaa tatatgcaca tgcggtgtga tgctcacatc      1560
     ctgaatttag ttgtaaagga aggcttgact gaagtggatg caagtgtgac tagtattcgc      1620
     aatgggattc agtttgtgag gtcttcaaca aatagactca aatcatttga tttgcgttgt      1680
     gatgctggaa cgattagtag aggtagcttc cctttagatg tgaagacgag atggaactct      1740
     acttatctca tgcttgaaca agctgtgaag tttaggattg cttttgagaa aatggaggct      1800
     gaagataaac tatataatga ctattatctg gaaaaggtgg atggagaaaa aaagattgga      1860
     ccgcctatgt caagtgattg ggatgcagct gagaggttaa ttcaaatcct tgctatattt      1920
     tacaagtcga cattggtgct ttcaggttca acttatgtta cttctcataa gatgtacaat      1980
     gagataatca acatggctag aaacctaact accttaaaca cagacacttt ttttgatgag      2040
     caactaaaga agaaagcgat agcaatgtta ggaaagctga agaaatattg ggatccgttt      2100
     ggtgaaggag tagaaatgaa taggttggtg atggttgcta ctgtttttga ccctagaaag      2160
     aagatgaaat ttgttgagct ttgctttgga aagatgtatg gtttaggtag tgtggaggtt      2220
     gttcttcttt ctgattcagt gattcaaatc ttgaaggatt tgtatgatga gtatagcagg      2280
     gcaaatttgt tgagaataaa tggaggcagc gattcaatgc catcttctca gtcacaagga      2340
     tcatggtctc agtctcaaga gcaagataga agtggagctt atgagagaac aatcaacaaa      2400
     actggtattc aattagaaga tatggagaac ttatttgatg agattgtgaa agaaacatgt      2460
     attcataaat catctaatga gttggatttg tatttgaatg aggctgtcga gactccacat      2520
     cttctaatgg gaatagaatc tgatgtgtta gattggtgga agctcaatag tgggaagttt      2580
     ctagttctgt cgctaatagc taaggatata tttgctatgc aagtatcgtc ggtggcatca      2640
     gaatctgcat ttagcactag tggtagagtg ttagatccat ttagaagctg cttaacacat      2700
     tacatgatag aagtcttgat gtgcacagag caatggttaa agtctgagat cagtatcaat      2760
     gaaaaaggat tgtcaaccat tcatgaattg cttgcagatc aagtggacga agatgagctt      2820
     atgagaggta atctattccc tttaaactct ctttaaattc tggtttacca attatagctt      2880
     acaagtttgc ttatagtccg tgtttcttaa attgttcatg tgatgtagag tttaaacctg      2940
     aattccacat ccatggtttt gagtaggccg agttatcgtt tcagccttca ggagacaaaa      3000
     atgcaaaaca aagtcatcac ctcatgtcct catcaactat cgtttaaact ttaaacttct      3060
     acttctatgt ttttcatttt cggattgttg ttttgctttt caattactct tgtttgagat      3120
     ttgagaacgt tctatttgtc atatttgtgt tcttgtttgt ggtttgccaa ttaggcttgg      3180
     atttggatgc tagttttgtt gctttttcat tctgtttttt tttctcctca tttgttacac      3240
     atgattagaa tatcggtttt tcgggtttat gggtaacttt tacccaataa tacccgaacc      3300
     gaaggaaacc cgtttttttc cgggtattta ccggttctta tattgattac ccaaaccgac      3360
     ccgaacccgg gtgtacccga accggaccaa acccaaaaat ttcagtttac cctattgggt      3420
     aataatttca ttacccattc aacccgaacc cgaacgggtt ctacccgaac ccgaacggat      3480
     tacccatatg cccaggccta                                                  3500
//
ID   VANDAL18    repbase; DNA   ; ATH   ; 11260 BP.
XX
AC   AL161500;
XX
DT   06-SEP-2000 (Rel. 5.08, Created)
DT   06-SEP-2000 (Rel. 5.08, Last updated, Version 1)
XX
DE   DNA transposon VANDAL18.
XX
KW   MuDR; DNA transposon; Interspersed Repeat; TIR; protease;
KW   VANDAL superfamily; MUDR transposase; VANDAL18.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-11260
RA   Kapitonov V.V., Jurka J.;
RT   "VANDAL18.";
RL   Direct Submission to Repbase Update (00-SEP-2000).
XX
DR   GenBank; AL161500; Positions  167349  178608.
XX
CC   VANDAL18 is a fossil of an autonomous DNA transposon.
CC   It is flanked by a 9 bp target site duplication.
CC   Its non-autonomous derivate is NVANDAL18A.
CC   It preserves short subterminal inverted repeats.
CC   It encodes MUDR like transposase (~position 400-3600), which
CC   is most similar to the transposase encoded by VANDAL2 and VANDAL1
CC   transposons.
CC   VANDAL18 transposase (7 exons, predicted by GENSCAN):
CC   QLTESTTFSYTWKFVDEITLKFGSSICLFGCDKCNYLIFQNGIFVLFEEQKRMDEGVMVL
CC   VGGWECKDNGEWRFKMSDNKYGKWVDLSFWFEGGDTVYTHQKMSPVSVDNESSLKKFKEK
CC   RQEKGGLNMYLSIDDVDVAEISSPEIRGHKDNNVVEVEVAGYMGGRMDDGNSTHAIPLTY
CC   EEDGFLEEIILGQSRMRAELPDTQATTLEESLDKDCPRCLDNVHGQSLQGVGIVDVEVTT
CC   IPDADAQETLDTCLVPESGEYVGPVDVVVTSLEASASEEEGQSDVEDNAAGVASDKANMN
CC   LRKGGDAIYIGWVFNNKVELHKTLTMYSMKRLFNFRIKASDKTRVIAVCDDKKCDWRVYA
CC   TFHENSEKVEIRTATLKHTCDVEARSKYGMKATRSMLGELLKTKYTHGKKGPRACELPEI
CC   VLAELPYMKAWHAAIYVGLRTVHSLAKHACCTVHLFRNVVHNFQCEGLVKMVSMAARSYT
CC   VGDLRYWFEEIQKRNIQCAKYLVEIKLSHRTLAYFPGMRYIVMRSNISESLNAAIQKAID
CC   FPVVTMVEFIRTMLMRWFCERRQTAAKTKTRCTPKIEDLLIDHLKLATDCAVIAADEWIY
CC   QVNDSFGMIFTVDLEKKTCTCRVFDVLMVPCCHALAAVGVRNVDIYSLIGDYAFVTEWRK
CC   L
CC   Another protein is encoded by the second strand, position
CC   10975-6714. It is similar to the proteins encoded by
CC   other VANDAL-like transposon, including the SUMO-like proteases.
CC   This protein is encoded by 15 exons, predicted by GENSCAN:
CC   MSPMRSSTSKAKQKSALGGARRSVSFEDDDDPFLSAKSTAEQSSDPPIIPRIPEFNRERL
CC   PKRLYATDCYPLNGRINTYSKPKYLLYLVDILDGTKELNYICAPCFSPFFQFEVRKCSFS
CC   GKLVHQMLCRGLYTRKKHEIWFVFAGQPFRFLLREFAILSGLNCGPYPSRRDILKSQQPI
CC   NLRHPYWNVLIVRSKLSISPLLPIDDPPYPNINDYWIDEVEDPTLDYMERVIGSRYKFQQ
CC   SDWRGGCRTWPKIVVDENHPKEDNARKAKKVPPHRPSDIPDSFQAGPSAKGKGKVHEEFS
CC   TPPPRTDGHDILHGLIMEQVNSKFRELKDELKVELFGDLTENSLLKDELLDEIISNLRHG
CC   DKFPSPKSGGKSPKSTSGDGIVTPPPKAASQKDIADEGQISDPAKNLDPKIVPERQSNMP
CC   SRIADSSSKNPAPSGQTHAQLLNALQQQAWSNYGGLSEVIKNINQSHASSSGPPQAGKFG
CC   STCSDPSGGPSSSKSSSDHNPKDFQTPLQTIPEDTEAEDQDAALGDAAIGDEEMDGKSDN
CC   VNITEDHNPNDFLTPQDEAVLVSDSESGDDFDDGANQEDEGDKDPQRGDEGDDTHQGDGD
CC   PKQGDEGDDESEGSKPFVITVAIHPEELLQSSKVDTEQLSDQEKGKKKPQRFCETVTVSV
CC   VKGPHDDLHPIAKVNDEVRKSFLSTIKAYRQRKYVIEGHVVPKTFFKDMHTPQAAVHQEA
CC   WFADVDILYTPLHLTAGHCVSIVINQKEGTIGVLDPIADSKTAKQMDDLRTNEVPLEFAY
CC   DRLPEVFQTEHADDSGPLVVKFIELHFQAISHDSITEESVEDLRMRFAVDIYEEFIEALR
CC   V.
XX
SQ   Sequence 11260 BP; 3607 A; 2039 C; 2645 G; 2969 T; 0 others;
     gagaatcttg caaaacctgc catattcccc tcaaaatctt acaatcccta tcatattcac        60
     agtcagctta cagaatctac cacatttagc tacacgtgga aattcgtgga cgaaattacc       120
     cttaaggtgg gtcagtgctc tgacttagat ggcgacagct tcgtccagcg aaaagaggca       180
     gcccctgttc cgtaataaat gtttccgttt ccgattggat gttatgtgga tttatttttt       240
     aaaaatggta atataggggt tagtcacttt aattgtttat taatgttgca gaggaaagat       300
     gttgtgttga acagaacaaa gtggtaaact ggggaatttg ggaggtgttg ttgaagacac       360
     aaccatttat tgcggacgag gtaaaattta ttatctggaa tttctgtcct tcgattcgct       420
     ttagtttggt agttctattt gtttgtttgg ttgtgataaa tgcaactacc tcatattcca       480
     aaatggtata tttgttctgt ttgaagaaca gaaaaggatg gacgaaggag ttatggtatt       540
     ggtcggtggc tgggaatgca aagacaatgg ggagtggcgt ttcaagatgt cggataataa       600
     gtacgggaag tgggttgacg taagcgaatg agatatgttg actgaaattg tatcaaaagt       660
     tgcaacaacg tttggactag acaggaagac caaatttcag ctgagttttt ggttcgaagg       720
     aggagacact gtctacacgc atcagaaaat gtcgcctgtc tctgttgaca acgaaagctc       780
     gttgaagaaa ttcaaagaga aaaggcaaga aaaaggaggt ttgaacatgt atctatctat       840
     agacgatgtc gacgtggctg agatttcgtc ccctgaaata aggggacaca aagacaataa       900
     tgttgtagag gtagaagtgg cgggatacat gggcgggcga atggatgatg gtaatagcac       960
     gcatgcaatt ccattgactt atgaggaaga cggcttccta gaagaaataa ttgtgtgtga      1020
     agaaacttaa agaggaaggc tagtttacta gagttggcct gcgcaaagcg gggacgagaa      1080
     aaggaagtgg atgtagagtt ggcaactgag acaagaggat gggcatcaga ctcagaagac      1140
     gaatcgttaa gggaggtatc agattcagag gattatgatt ttgataatat gagggatatg      1200
     attgatacag attacctgcc ggattgggat ccttggaagg attggaggaa cagcacattg      1260
     acaagttttg acggttagcc ggggacacaa atgtgtggaa caactttggg ggataagtca      1320
     tctaggccca ataatatggg ggacgatata ctgctttgtg gcgggggaca aagccgggtt      1380
     gaccttgtcg aagtggaagt tattgagatg aacggaatgg gcgatgagag tgcaaaatgt      1440
     cgattcagct ggggcaaagt agaatgagag ctgaattacc ggatacgcaa gcgacaacat      1500
     tggaagaatc gttagacaag gactgtccaa gatgtttgga caacgtgcat ggacaaagcc      1560
     tgcaaggggt aggtatagtg gacgttgagg ttacaacaat cccagacgct gatgcacaag      1620
     gtgatagtga gaatggaatt gaggataatg atgaagaaaa tacgagaatg tctatataat      1680
     tggggcagag ggcagtccca aatatgagga cagattcaat gacagagacg ttggatacgt      1740
     gtttggtccc tgaatctgga gaatatgtag gaccagtgga cgttgtagtg acatcgttgg      1800
     aagcaagtgc atctgaagag gaaggacaaa gtgatgtaga ggttggtaat acaacagtgg      1860
     gggaaatgat aatacagcaa gggcactggc agaggacatg tcgagaagat taacagacgg      1920
     agagactata tttactgaat tagcagggga cgagatgttg atgtgtagag atgccgttcc      1980
     gttcaaggac aacgcagccg gggttgcttc cgacaaagct aatatgaatc ttaggaaggg      2040
     tggcgatgca atatatatcg ggtgggtatt caacaacaaa gtcgagttgc ataaaacatt      2100
     aactatgtac tctatgaaaa ggctattcaa tttccgtata aaagcgtccg acaagacacg      2160
     agtcattgcg gtgtgcgatg ataaaaagtg tgattggagg gtatatgcaa cgtttcacga      2220
     gaattctgaa aaggtggaaa ttcgtacggc gactctaaag catacttgtg atgtcgaggc      2280
     gcggtctaag tatgggatga aagcaacacg atcgatgtta ggtgagttgc ttaagacaaa      2340
     atatacgcat ggtaagaagg gaccaagggc ctgtgaacta ccagaaatag tattggctga      2400
     actaccatac atgaaggctt ggtacgcaaa agaaatagca atgaaaaaag ctcgtggtag      2460
     tgaggaagaa ggttataagt ttttcgcaga catgtctcca cctgttgagg acaactaatc      2520
     taggtacgtt gtccacagtc catacggatt atacggagga agggaatatt cgtttcaaat      2580
     atcttttttt tttgcgtttg ggcttcgatt gttgggtacc agtatttgcg gaaagttatt      2640
     gtgatagatg gtgcacagac caaagggaaa tacaaaagct gcttagttgc tgcaagtgga      2700
     caagatgaaa attaccaaat attcccatta gcgtttggta ttatagacaa tgaaaacata      2760
     gcaggttggc agtggttttt cgaatagttg tcacagttta tccctgatga ggaagatcta      2820
     gttttcgtct ctgacaggca tgcggccatt tatgttgggc ttaggacagt tcactctctt      2880
     gcgaagcatg cgtgttgcac agtacatttg ttcaggaacg ttgtccataa tttccagtgt      2940
     gagggacttg taaaaatggt ctccatggca gcgagatctt acactgtggg agatttacga      3000
     tattggtttg aagaaataca gaagagaaac attcaatgtg ccaagtattt agtagagata      3060
     aagctatctc acaggacact ggcgtacttc ccgggtatgc gatacattgt gatgagaagc      3120
     aatatctcgg agtccctaaa tgctgcaatt caaaaagcca tagatttccc ggtagtgacc      3180
     atggtggaat ttataaggac aatgttgatg cgttggtttt gcgagagacg acaaactgca      3240
     gctaaaacaa agacaagatg tacgccaaaa atcgaggatt tgctaataga tcatcttaaa      3300
     ttagccacag attgtgcggt catagcagca gacgaatgga tctatcaagt aaacgacagt      3360
     tttggcatga tttttactgt tgaccttgag aaaaagacat gtacttgcag agtatttgat      3420
     gtgctaatgg tcccgtgttg tcacgcttta gcagcggtgg gtgtaaggaa cgtggacata      3480
     tactccttga tcggagacta tgccttcgtg acagagtggc gtaaactata gcgtgaacat      3540
     attctacccc cgccaaagga aaaggacaca gaggtcccga acgatattag tctagtggtt      3600
     gtatatccac caaatacaag aagaccagtt gggagaccaa ggaccgttca gataccatcg      3660
     aggggggagc cggtaaataa ctaaactctt agcatagttt taagtcctcc gaatctatca      3720
     taaccaaacg tgtcatctac ttgtagggca aaggatggaa aaagaagaag acaagacaat      3780
     gcagcacatg tgggaaggat ggccacaaca gaggctgggg gaaaaagtgc atcgagcgcg      3840
     tgttaacgtt tttttgtagt ttttgatgtt tcgaaaagac gttttttggt ccatataagt      3900
     ttttggtttt ggtctccaga ttttaataca gatcgggggt gtctttcggg aaggggatgt      3960
     aattcagtcg aacgattgct ttttgtaatg ttaacttatg atgttgacta ccaactagtt      4020
     tattgtaatt gctacatata gaacaataat tattatatta gacagtggaa gagtaaaaac      4080
     gcagaaagat gcattaaaag tgctggaagc aaagtaaacg tgaagactga aagcgctgga      4140
     agataatcac agtacccacc aatcaataca aagaggacag gggttgcaat aattgcattt      4200
     cttatattct gagtatcgac gagggggatc aatcatgtaa cacggccagc ttatccagtt      4260
     caagccaagt tagtgtggcg caattatatt gatattggac ataacactca tagccacaca      4320
     atcggcgttg cggcaagaga caacattgag tttaaataga ttcatggcgg taatggcatc      4380
     atttggtcta ttaaccgcaa tatggtagag acccttcgta aaaagtattt tgggggacgg      4440
     atcgggtata taggcgatca tgtccattgc ttctttgatt aacctttcaa atgaagccag      4500
     cctaatgctc tctaagtagc aagcaaccgg attaccagcc tttacacatc gtaacagaac      4560
     aagtaaatgg gtgaaccact ggagactaat tgagaatgcg cttcaatgag ggccagggat      4620
     gtctcccgcg aaacggatgg atcaagtgct agacgcaagc cagcgttgcc agagacaatg      4680
     aggggaccta agtgttggta agataacttt ccaacaagaa ggacaattga aaccctaaga      4740
     tgttgaggaa gcgattgcca gtttaccaaa ttgtgatgtt tgaagtatgg tttagtttgg      4800
     atttcacaca gaaagaagaa ctatatatat agttgggatt aaaggagaaa ataaaatgga      4860
     tgcaattagt aggtatggac aatgaatatt agatgtgaca aaaagctata aaagctacac      4920
     cattaggaca aagcaaactc tgcaaagtac aaaatttaat taaacggttt atagaattta      4980
     gaatattagt tgaggaccat aaatatgaaa actaaatgaa tgatgaagtg acaagacaat      5040
     tagccattat taggcaaatg gggacatgga aaagtaaata tatagactaa atattgaaaa      5100
     atcataaaac gaaatatata aaaaacttat caaatccgaa aaaaatggac acatactcat      5160
     atggtccaca tcttacagta cggttacata attagtggac aaaataatca aagataaaac      5220
     aatagttctg tggaaagaaa aagatttaat agagctctag caatgaaatt atcgctacat      5280
     ataagtgcca aggacgaaag cgacaatggg gacaaggatc acgaggacga gaattatatg      5340
     cgggggacaa gaatggactt ggtcgatgat ggtacgaggg gagcgttcga gaagaccaac      5400
     ttgatgctga agagatttga tttcttgctg gtagaggtct aggcgatccc acatgtacgg      5460
     aggatcaatg cgttcaccat tagacccggt aactacgaac ttaatgtgtt catcctgttc      5520
     cctgacagag cacttgagcg ctgcaatctt gtccaccaat gactcgtcca accatttgac      5580
     aagatgacgc ccaggtcggg ccttgaaaaa gatagcaaaa gcaggtttta tacgtgtgga      5640
     gatagaaatg aaaaatgggg gttaatgggc atacctctct cttctcgcac tggtagaact      5700
     gtctgttgtc ctcagaggac gaactcgcaa gaaccacaat cccaccacaa taacagcgac      5760
     gtggaatacc aagaatgggc gtcgacggtt gggaagggta aactagtcca tatgacgtcg      5820
     gagattctga atgctgagaa gattccgatg gttgtgtata actatgaagg cccatgttac      5880
     agtggctgtg gataattttg aacaagttaa aaggaaagtg aataattaat ggggttggaa      5940
     aattgagaaa gtggacaagt tatccttcaa aaggtttgaa agatttgaag gataattaat      6000
     ttagagagat aaaagggggg ggggagaatt tagagagata aaaggccggg gggggggggg      6060
     gaagaagaac ttcagtaacc taggcaccta ataatataat aatgttaaaa atattaagtt      6120
     gatgtgatgt gacataaagg taaaatcata gaaaagcgta agggataaag attagtagaa      6180
     aaaattgtgg agacagttga ctgagactgt tcttagtggg aagatacccc acaatagtcc      6240
     acgaatgtga agtgtattgc atttgcatac ttacaaagcc acaacataat tgttgtcccc      6300
     tctaaatata taatgtccct ccccatccgt tgataagtga ttttacctcc acataaaata      6360
     ttttacataa agataagagt tatatatgga ataaaaggta gtaaaaagtt aagtctccaa      6420
     aaaacataca agttcggaat aaaagtagag tcactaaata ttaaaacaga cataaattct      6480
     aacatggaca tcaaacacga agagcttcaa taaactcctc atagatgtct acagcaaatc      6540
     tcatcctgag atcttcaacg gactcctcag ttatggagtc atggctaatg gcctgaaaat      6600
     gaagctcaat aaacttcaca acaagcgggc cactgtcatc tgcatgctca gtttggaaga      6660
     cctcagggag acgatcataa gcaaactcaa ggggcacttc atttgtcctc aggtcttggg      6720
     ggacaagcga ctttataata agcggaatca ggacaataaa aggtttcatc aaaaccgtcc      6780
     atctgtttgg cagtcttcga gtcagcgata gggtctagca cacctatggt accctctttc      6840
     tgatttatga caatggaaac gcagtgaccg gcagtgagat gtaaaggagt gtacaagatg      6900
     tcgacatcag cgaaccaagc ctatcggatg ctacggccag ggacgatacc tttcacatag      6960
     tcccagatct tactgttcca cgaccagtca gatttacttt tggccttctt ataacgtgga      7020
     tagagctcaa caaagttaag tgcgaacgaa gaatctagta taacagccat actctgtacc      7080
     aactcatcgc catacctccg cgccaacagg cttagcatag cctcgatgta ttggattaca      7140
     taaagacaac cagttagatc tgagtaaatt ttaacatatt cccaggttta gcattgattt      7200
     ggtacatacc tcctggtgga cagcagcctg aggagtgtgc atgtccttga aaaatgtttt      7260
     agggacaaca tgtccctcga taacgtactt cctgaccatt cattcataat aatgattaat      7320
     agatacgtag aagaatatta gttaccaaaa caataattca gcggaaaact taattacctt      7380
     tggcgataag ctttgatagt ggacaaaaag cttttccgaa cctcatcgtt tactttggca      7440
     attgggtgca aatcatcatg gggccctttg actactgaga cagtaactgt ctcacaaaaa      7500
     cgctggggtt ttttcttgcc cttctgggag gaagcataga cttagaagta tccccttctc      7560
     caacctctct ttttctttta atcctagagg gaaaagtctc tgaaattggg acaccagcat      7620
     gtgcattacc ctataagaca aagatttatg tcagatccat aaaagacaac aaaagattga      7680
     aaaaacatag atttatacct cttgatcgga tagttgttca gtatcaactt ttgaggattg      7740
     aagaagctct tctggatgta tagcaacagt aataacaaaa ggtttgctaa tcgcaataaa      7800
     agatataata aggattaaat gaggaatact tcgttcatgg tctgatcatc ttgttgatca      7860
     ccggagtcag accttccttc actctcatca tcaccctcgt ccccttgttt tggatctcca      7920
     tccccttgat gagtatcatc accctcgtcc cctcgttggg gatctttgtc ccctggatta      7980
     gtatcatcac cctcgtcctt ttatttggga tcttcgtccc cttgaagaga atcatcaccc      8040
     tcgtcctctt ggtttgctcc gtcatcaaaa tcgtctccgg attcagagtc actaactaag      8100
     acagcctcat cttgaggcgt taggaaatcg ttgggctaca agtaaaaaga aagaattaaa      8160
     ggtaaataag attctcaaga ccaaaataat tatttataaa aaaaaacaca actatctaga      8220
     aacttacgtt gtgatcttca gtaatattca cattatcaga cttcccatcc atttcctatt      8280
     taaaaatgtt atgcaaacat ttacaatgtt atatgatacc aaaaaagaaa taaagggaca      8340
     atactcacct cgtctccaat agcagcgtct ccaagagcag cgtcctggtc ttccgcttct      8400
     gtgtcctctg gtatggtctg cagcggcgtt tgaaagtctt ttggctaaat aagaagtaag      8460
     cacaattggt taaagtaaaa ggaaattcta acgataagta atagatgcca aaccattaaa      8520
     cttacattgt gatcactcga ggatttcgag gacgatggac caccagaagg atccgaacaa      8580
     gtagaaccaa actttccagc ctgcggagga ccagaggaag atgcatgaga ttggttgatg      8640
     ttcttaataa cttcagacaa tcccccataa ttagaccagg cttgctgctg caatgcattc      8700
     aagagttgag catgagtctg tccacttggg gcagggttct tgcttgacga atcagcgatt      8760
     cgcgagggca tattactttg tctctcaggg acaatcttgg ggtcgaggtt cttcgcgggg      8820
     tcactaattt gtccctcatc tgctatgtcc ttttgggacg cagccttagg gggtggagtg      8880
     acaattccat caccactagt ggactttgga gactttccac cagatttggg acttggaaac      8940
     ttgtcaccat ggcgcaaatt gcttattatc tcgtctaata gttcgtcctt taacaaagaa      9000
     ttctctaaga taaacatacc agtaaggtcc ccaaataatt caaccttcag ttcatccttc      9060
     aattcacgaa atttagaatt aacctgttcc atgatcagac catggagaat atcatgtcca      9120
     tcagtcctcg gtggtggagt actgaactct tcatgcacct tccctttacc tttagcagag      9180
     ggcccttttg gggaccagat ggaccagcct ggaaagaatc agggatatcc gatggtctgt      9240
     gtggaggcac cttctttgcc tttcgagcat tgtcttcttt aggatggttc tcatcaacga      9300
     cgatctttgg ccaggttcga caaccacctc tccagtcaga ttgttggaac ttgtatcggc      9360
     taccaatgac cctttccata tagtcaagcg tcgggtcttc aacttcatcg atccagtagt      9420
     cgttgatatt tgggtatggt ggatcatcaa tgggcaacaa cggagaaata ctcaactaca      9480
     ttgaagccga aacaatttat caactaaaca aatcatcaaa ggcaaactag tgagagacta      9540
     ataagaatct aataaaatta ggtccacaga ttaccctagg aattagctct gtctccatta      9600
     tgttggagtt gtggtaagtc ttcaacggag gcaaactggt gagagacgtc tcactgatag      9660
     tctgcgtatc atcggggttt ggaaggtatc tttccaattc agggataacg ttaaagacaa      9720
     aaagttggaa gacaagaggg aatccatgtg ttgaattgtt agactgattg aacttcgtga      9780
     ttagtcctgg gagattgctg accttggatc taactttgtg agaaggaagg actctcgtcc      9840
     ccagggatac gcctcaaaag cctccaagtc cttcaccatt tcaacgactt atttagaaac      9900
     ttttacaggt tgggaactac agatcaagat cccctcaaca ataactataa cagcgagaca      9960
     aagccttctc caaggttcca tcctctcttc tttaggcttc agcttatctg tcttcaacca     10020
     tttgaatata tccttgatga ggacgacttt gtgttcctta cctattagga cattccagta     10080
     aggatgtctc agatttatgg gttgctgcga cttcaatatg tctctccgag aggggtaagg     10140
     accacaattc aaaccactaa gaatggcaaa ctcccttaac aaaaaccgga agggctgacc     10200
     ggcaaaaaca aaccaaatct cgtgtttttt ccttgtgtag aggcctctac acaacatctg     10260
     gtggaccagt ttcccggaga aagaacattt acggacttca aattgaaaaa agggactaaa     10320
     acaaggggcg caaatgtagt ttaactcctt cgtcccatct agaatatcga cgagataaag     10380
     aaggtactta ggcttagagt atgtatttat acgcccattc agcggatagc agtcagttgc     10440
     gtaaagtctc ttgggaagtc tttcccgatt gaattcaggg atgcgaggaa ttattggcgg     10500
     atcagagctc tgctcagcgg ttgatttggc agagagaaat ggatcgtcgt cgtcttcaaa     10560
     ggacaccgac cgcctggcac cgccaagcgc tgacttctgt ttcgctttgc tggtggaaga     10620
     cctcatctgc gttggggtaa aatcaaacaa ttatcaaatc agttattcga tgtgataaaa     10680
     taattaaaca cacaggagga cgaaaaaccc taaaagctgt aatgggggac atttcgatta     10740
     atcggaacaa actcaatcaa ccggcttaat tgctaaaggt tttcgaactt tctgggtaaa     10800
     tgaatcgcac aggagaggac gaactatcta aaatcataat gggagacaaa ctcgattttt     10860
     cataacagac cagtaacaag ggatttgcta aagattttcc aaaaatactt cactgaataa     10920
     aatatgaaga catgattgaa gatagcaaca tgcagaaact tgaaatgacc ttaccggaga     10980
     cataatccga tgaaagttat cggtgaagga aagggaaagt atgagagaga tagacgaaag     11040
     agagagagtt aactgttgtt gtttttccgc acggtttaca atgaaaaaga gataaaaggt     11100
     attgtaaaaa gacgcagttg ttgagcgcga aaactgctca gtaaaccgtg ggaacaaaat     11160
     ggacatttca caaccaaatg tggtatgagt tgtaatgccc gaagaaatat ggcagattac     11220
     ataacgattg ggaaaaatat ggcagatttt ataattttcc                           11260
//
ID   HELITRONY1B repbase; DNA   ; ATH   ; 1313 BP.
XX
AC   .
XX
DT   19-JAN-2001 (Rel. 6, Created)
DT   19-JAN-2001 (Rel. 6, Last updated, Version 1)
XX
DE   HELITRONY1B is a non-autonomous DNA transposon, a consensus sequence.
XX
KW   ATREP5; HELITRON1; Non-autonomous DNA transposon; HELITRON superfamily;
KW   HELITRONY1A; HELITRONY1B.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1313
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY1B.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
CC   [1] (Consensus)
XX
CC   HELITRONY1B is a non-autonomous DNA transposon.
CC   There are several copies of HELITRONY1B in the genome; they are
CC   ~94% identical to the consensus sequence.
CC   HELITRONY1B transposes precisely in the AT target sites, without
CC   duplication of the host DNA (target site is included in the
CC   consensus sequence).
CC   There is 82% identity between HELITRONY1B and HELITRONY1A.
CC   There is 81% identity between HELITRONY1B (position 133-1313) and
CC   ATREP5 (188-2388); their 30-bp 3'- and 20-bp 5'-termini are
CC   90% and 95% identical with each other.
CC   HELITRONY1B and HELITRON1 share the 100% and 85% identical 20-bp 5'-
CC   and 33-bp 3'-termini, respectively.
XX
SQ   Sequence 1313 BP; 532 A; 152 C; 126 G; 502 T; 1 others;
     atctacatat acatttttgg tagacttttt ggccaaaaat cccttaacta tttactaata        60
     acatttaggt ccttacaaat tatatctcaa ccaaatattc tattactaaa aatttacaat       120
     ttgttagttt gcattaaata cttaaattaa ctctttccta tattacatat ttagtcccta       180
     caaaatctat ctaaaaaaaa tatgtgtcta aatttatatc cttaattaaa tcttatcatt       240
     attgaactac attcaattaa ttacgaattt cctaaaattt ctctatctac attaaatata       300
     aatatatgct ttttctttca cttttagttg ttcttatatc taatttattt gattttatat       360
     aaaatatata tagttaataa aatattagat tttttctgca tatgatgtaa ttcaaatttt       420
     taaaaacaga catatattac tcaatcgatg aagaaaaaaa agtaagtgta aaaagtctca       480
     cattgcttaa gaaattgggc aatggttcag agtcttatta taaaaagaac caaaatgatt       540
     ttgaataaga atgaactgga agtttgattt atcaggcatc caaaaataaa aatgttatcc       600
     ggtttactct gattctctat tttaaagaac tgaatcttta aaaatttcaa aatattataa       660
     atatttaaaa tttcttaaaa gttaaatatc aaaaaattta aaacttttaa aaagttatac       720
     tttattaaaa aatattaaat atattaatac gggacaatat actacgggtg aaatcctata       780
     tataacaatc aaaatacaat tataaagttt ggatcgatat tattattatt ttttttaatt       840
     tcaataccat aaatatttaa actttagaaa aaatgacaaa atgatgttta atttcacgtg       900
     acggggttat atggtgggac gagtttgagt tgatattaat acgggatggt atatactatg       960
     ggtgaaatcc tataattaac aatcaaaata taattataca attttaaaaa ctaaaccaaa      1020
     gtaacaatat taatatatat atatatatat atatatatat aacttaaaat tttaaatttt      1080
     ttagttctaa aattgtccca aggtgtatta tacgttaaaa aaataacata tgtctatata      1140
     tcatcttaaa gacaaaattc atttttttga taaaaatata cacatgtggt atacctctta      1200
     atatgttata tatatatata tatatatata tataatataa tattaattag aataaaatcg      1260
     ttaactttct aatgawatat caacccgcgg tgtaccgcgg gtcaatctct agt             1313
//
ID   ATREP7      repbase; DNA   ; ATH   ; 944 BP.
XX
AC   .
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATREP7 repeat - a consensus.
XX
KW   non-classified repeat; ATREP superfamily; ATREP7.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-944
RA   Kapitonov V., Jurka J.;
RT   "ATREP7.";
RL   Direct Submission to Repbase Update (00-APR-1999).
XX
CC   [1] (Consensus)
XX
CC   ATREP7 individual copies are ~94% identical to the consensus sequence.
CC   Multiple diagnostic positions indicate the existence of several ATREP7
CC   subfamilies.
CC   ATREP7 shares common structural features with elements from ATREP
CC   superfamily;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
SQ   Sequence 944 BP; 364 A; 111 C; 114 G; 345 T; 10 others;
     atcatatata tgaaagttgg ccaactctct ccatatgagt gacacatcat cacacaagaa        60
     aatgacatgt gtcattctac attaattaat taaaaaayta gcaaaactaa ttgagaaaaa       120
     atcaaaagtc ttttgttgtg ttaaattctc cattaatctc acttttaaat gaattttcta       180
     aaaataatya ataaataaaa aatcataata atgtatcaag yactactttc attmtattct       240
     acttatttta ttaatttttt ttatcaatag tcattaaycc ataatgacta aaattttact       300
     tgtgttgtas tttagatgtt tgctacctaa cctcatatta atttagtaat tttagttgga       360
     tattttttta ttattacgtt ttgtgaattt gatttatcat atgaccttct ttctgtacat       420
     ttttgtgngt tctgataact tggtaacatt gatatacaat tttttcacgt aatagtcatc       480
     caagacatta gacataccaa aaaaamaaca acatgagact ctatatgact atatggtagg       540
     gatgagaatt aaagtgttga cttaaattac tagcatatca tgatgtgatt gtgtactaga       600
     tgacgagaga atatatggaa taaaraattg tttgttacaa ttaagttagg caagtttcaa       660
     aacacataag taatataact acatacattg tatcagtata tcatatattg ttgttgtatg       720
     tgatcatgat agtgaaatat tagaataata aatatataaa tattcatatt gtagtagaat       780
     tgatatttcg agttatagat gaatctaatc ataaaaaata ataattatat taaatagatg       840
     aatttatcaa aatgaacatc aaaatcaaca aaaaacyata atcatatttt ttcgacaatt       900
     ttaaaaacaa aaacccatgc gtagcatggg tgttcatcta gtaa                        944
//
ID   ATREP12     repbase; DNA   ; ATH   ; 1344 BP.
XX
AC   .
XX
DT   28-MAR-2000 (Rel. 5.3, Created)
DT   28-MAR-2000 (Rel. 5.3, Last updated, Version 1)
XX
DE   ATREP12 repeat - a consensus.
XX
KW   ATREP superfamily; ATREP12.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1344
RA   Kapitonov V.V., Jurka J.;
RT   "ATREP12.";
RL   Direct Submission to Repbase Update (00-MAR-2000).
XX
CC   [1] (Consensus)
XX
CC   There are ~10 copies of ATREP12 in the genome.
CC   ATREP12 copies are 98% identical to the consensus sequence.
CC   ATREP12 shares common structural features with elements from ATREP
CC   superfamily; it has conservative termini: 5'-ATC and CTAGT-3'.
XX
SQ   Sequence 1344 BP; 368 A; 247 C; 170 G; 558 T; 1 others;
     atctaaatat actaaatcag cagtcacttt tccaataact gatgcattca gtgattgaca        60
     catcagctta gtactatttt tttattcttt cattttcacg caggattttt atgtgtcgtt       120
     tttatttaac tttgtttctt tctcaaacga ttttctcttt catccccacg atctccacat       180
     ctccactttc tctcttccaa aaactccatg actactgtgt aaaatctcaa agatgggttt       240
     ctcaacatca ttaatcgatt actcagaaat caggtacttt gttcatctca atgaaccaat       300
     ttcttttttc ttcctgacaa agacgaaacg caccctaaga gctctatctt gcattaggga       360
     aatcgtattc gtgaataaat cccctttgtt aaccatcttc tatttctgtt tgtaattttg       420
     ttttatatat atagaattct ccatagatcc gaaaatcata tatccttctt ctagatttct       480
     atggcttttt tttttttttt tttgctttgt ttctgcttta tttgactgaa ttcgatttct       540
     ctcatacatc tccwtttttc cataggatta ttctttaata caatcaatgc ctatgattct       600
     cccgtctcac aaacactcaa ggaacaacga caaattttgg cttctcatct gaacagttgc       660
     cttaaaacaa gggtgagttt aatatcttaa tcgaagctca agtgtttttt taatggtaaa       720
     ttaattctca tactttttac tattcttctt tcatctctta ttttacttct ttatatctgc       780
     aatttctttt ttgtattaaa ccgcaattgt attttcacgc aagatttttg tattaataca       840
     aatacttcaa ttttaaagtc atctcttatt ttacttcttt atatctgcaa tatctttgat       900
     attgtttcaa aggcagcgtc tgcgtcatgt agttacttac ttgtgcacat tttacatttt       960
     tttttagact tccaagcttt gggtgtcaac gaatgtttgt aaactgaatt actgatgatg      1020
     agaagaagaa cacattacaa ttggttggag ctaatgatga aataagcgga catgtatata      1080
     cccagcataa ttttcgtact tatactctct tatatttcta aactcttgat ttgttagtta      1140
     ctgtctatcg caattgattc attgggtaga aaagttgtac cttctttata tctttttctt      1200
     aatctttgta tattcttcag tcaatgataa taaatttgtt gtatatttat gctgtctgct      1260
     ttattttaaa aatcttagtt aagagttgta gcagatataa tttaaaacaa tgttgtccct      1320
     gcatagcagg ggccaaatgc tagt                                             1344
//
ID   HELITRONY1A repbase; DNA   ; ATH   ; 1350 BP.
XX
AC   .
XX
DT   19-JAN-2001 (Rel. 6, Created)
DT   19-JAN-2001 (Rel. 6, Last updated, Version 1)
XX
DE   HELITRONY1A is a non-autonomous DNA transposon, a consensus sequence.
XX
KW   ATREP5; HELITRON1; Non-autonomous DNA transposon; HELITRON superfamily;
KW   HELITRONY1A.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1350
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY1A.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
CC   [1] (Consensus)
XX
CC   HELITRONY1A is a non-autonomous DNA transposon.
CC   There are several copies of HELITRONY1A in the genome; they are
CC   ~94% identical to the consensus sequence.
CC   HELITRONY1A transposes precisely in the AT target sites, without
CC   duplication of the host DNA (target site is included in the
CC   consensus sequence).
CC   There is 76% identity between HELITRONY1A and ATREP5 over their
CC   complete lengths (several long indels); they share ~90% identical
CC   30-bp 5' and 3' termini.
CC   There is 70% nucleotide identity between ~160-bp 5'-terminal
CC   portions of HELITRONY1A and HELITRON1; their 20-bp 5' termini
CC   are identical); their ~150-bp 3'-termini are 70% identical
CC   with each other.
XX
SQ   Sequence 1350 BP; 561 A; 164 C; 129 G; 496 T; 0 others;
     atctacatat acatttttgg tagggttttt ggccaaaaat ccctcaccta tttactattt        60
     tcaatattag tccttacaaa tttaatctca atcaaatact ttataactaa aaacttacaa       120
     ttagcttaat tgcattaatt agttgaatta actctttcct aaatttttat ccttaattaa       180
     atctttcttt attgaactat attcgattaa ggctaatttc ctaaaatcta tatatcgaca       240
     ttaaatataa atatataatt ttctgtcact atatttgttt ttatatctag ttttttttac       300
     tttatatata aaatacatat agttaataaa atattaaatt tttttgcatc tgatgaaatt       360
     caaatttttt aaaacaaaca tataatactc catcgatgaa aaaaataagt tttaaaggtc       420
     ccacattgct taaaaaatga ggaaatcgtt aagagtcata ctataaaaaa gaccaaagtg       480
     attctgaata cgaatgagca agaaccttga tttcggttta cttcggttct ttattttaaa       540
     taactaaaag tttaaaagtt ttaaaatatt atatatattt aaactttatt aaaagttaag       600
     tattacaatt ttttaaactt ttttaaaagt taaactctat aaaatatatt taaatattaa       660
     tgattttaaa attttatgaa ctttttataa atattcgaac ttcataagaa aatgataaaa       720
     tgatgtttaa tttcacggga cgaggttata tggtgggatg agtttggatc gatattgata       780
     cgggatgata tactatggat gaaatcctaa aattaacaat caaaatacaa ttatacaatt       840
     ttaaacacta aaaaaattaa aattttcaaa aaaaaaatta gttataaaaa tcatacagag       900
     gtgtatcata gtatcataca taaaaaaaca atagcatgta tctatagatc atcttaaaga       960
     caaaaatatt attttttatt taataaaaat ataggccttt gatgtacctc ttgaatatgt      1020
     tatatatata aataatatta attaaaataa aaatatctaa ttttctaaca aaaatatcga      1080
     ccccggtgta ccgcgggtca atctctaaat aatacaaatt ttagatcttt attatctcta      1140
     aaaaacccaa accaaaaaaa caaatactga attttaatat taaactaaca aatatgagaa      1200
     cataaaacat gaattatcca agatttacat agataaaaat tatgtgttaa aaatatatta      1260
     tttatataga aataataatt cgtataaaaa atatctataa ctttttaatg aacatatcca      1320
     cccgcggtac accgcgggtc aatatctagt                                       1350
//
ID   ATREP8      repbase; DNA   ; ATH   ; 1080 BP.
XX
AC   .
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATREP8 repeat - a consensus.
XX
KW   non-classified repeat; ATREP superfamily; ATREP8.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1080
RA   Kapitonov V., Jurka J.;
RT   "ATREP8.";
RL   Direct Submission to Repbase Update (00-APR-1999).
XX
CC   [1] (Consensus)
XX
CC   ATREP8 individual copies are ~93% identical to the consensus sequence.
CC   Multiple diagnostic positions indicate the existence of several ATREP8
CC   subfamilies.
CC   ATREP8 shares common structural features with elements from ATREP
CC   superfamily;
CC   ATREP elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
SQ   Sequence 1080 BP; 406 A; 135 C; 125 G; 385 T; 29 others;
     aattatatat atgaaagttg gncaactctt tccatatgag tgacacatca tcacaccagt        60
     gaatgccaca tgtcattcta aattaatatc attaaaatat aayaaaactt agtgataaaa       120
     atttaaaagt ttcacattgc attraatcat ccattaatcy yactcttaac waaatatctt       180
     catttaaaag aaaaaaatac aaaaaatcat gttaatgtat caaacactac tttcatttta       240
     cttttcttat tttgctattt twtaatagtc attacttgat aaygactaga aattttcgtg       300
     tattrcaact tagytgtttg ctacttaacc ttttttagtt tagtaatttt aacttagtyt       360
     tttcttttta ttacattttt tggtytacat gatatggtct tttttgtgct ttatgataaa       420
     ttggtaacat taataatgac atgcatrttt tttaagtaat grtcttttga gacgttagat       480
     ataccaaaaa gttwaatata cgacrctttc tcyaatatgg mtatatgcaa atgcaaagag       540
     agaaacctaa aagtgttgac tyaaaagact atttaatttw tgcttttttt tctctttcat       600
     gtgaaaactt ttaaarcaaa tgagtagtta rttatayatt tgttattcaa attatgtcaa       660
     tccaatattt agccatgagc ctatcatgat gtgattggaa taytagatta ggagagaata       720
     catggaacaa gaaattgttt gcttagaatc aagttaggca actttcaaac caaataagta       780
     rcataattgc ataccattgt atcatatatt gttgatgtaa rtatttcatg atagttaaaa       840
     agattagaaw cttgggtata tagataagaa gatttataca tgaaaaaaat ataattgata       900
     tttgaatcaa aagtgaatct aactatacaa atataattac ataaaatgaa tataacttta       960
     ttaactacat aataacakac acgaaaataa cataaattag caataaaaat agttaaacat      1020
     aattattttt aaacaawttt caaaacaaca acccacgcgt agcgtgggta ctcacctagt      1080
//
ID   ATREP3      repbase; DNA   ; ATH   ; 2099 BP.
XX
AC   .
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   05-MAY-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   An AT-rich dispersed repeat, putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   ATREP superfamily; Dispersed repeat;
KW   putative nonautonomous DNA transposon; ATR1; ATREP3.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2099
RA   Rounsley D.S., Kaul S., Lin X., Ketchum A.K., Crosby L.M.,
RA   Brandon C.R., Sykes M.S., Mason M.T., Kerlavage R.A., Adams D.M.,
RA   Somerville R.C., Venter C.J.;
RT   "Arabidopsis thaliana chromosome II BAC F26C24 genomic sequence.";
RL   Unpublished.
XX
RN   [2]
RP   1-2099
RA   Parnell L.;
RT   "ATR0053 repeat in CSHL AtRepBase.";
RL   Direct Submission to Repbase Update (00-OCT-1997).
XX
RN   [3]
RP   1-561
RA   Jurka J., Ma J.;
RT   "ATREP3.";
RL   Direct Submission to Repbase Update (00-JAN-1999).
XX
RN   [4]
RP   1-2099
RA   Kapitonov V.;
RT   "ATREP3.";
RL   Direct Submission to Repbase Update (00-FEB-1999).
XX
RN   [5]
RP   1-2099
RA   Surzycki A.S., Belknap R.W.;
RT   "Characterization of repetitive DNA elements in Arabidopsis.";
RL   J. Mol. Evol. (1999,.
XX
CC   [4] (Consensus)
XX
CC   Individual copies of ATREP3 are ~97% identical to the ATREP3
CC   consensus sequence.
CC   Target sites are not well determined since ATREP3 copies are
CC   flanked by (AT)-rich sequences [4].
CC   There are several minor ATREP3 subfamilies determined by multiple
CC   diagnostic positions in multiple alignment;
CC   multiple copies of ATREP3 have internal deletions typical for
CC   DNA transposons [4].
CC   ATREP3 portion (position 700-900) is conservative since it is
CC   present in several ~75% similar copies in ATREP4 (1300-1400;
CC   1600-1900) and ATREP5 (930-1300; 1360-1580; 1705-1921; 1981-2081;
CC   2113-2270; 2272-2380).
CC   ATREP3 shares common structural features with other ATREPn
CC   elements; all these elements have conservative termini: 5'-ATC and
CC   ATCTAGT-3'.
CC   ATREP superfamily has been found independently by [4] and [5].
CC   Taking into account conservation of terminal regions and highly
CC   variable AT-rich internal protions, ATREPn elements were classified
CC   as putative non-autonomous DNA transposons [4]. For example,
CC   comparison of ATREP1-ATREP2 shows that these repeats share almost
CC   identical 60 bp- and 230 bp-long 5' and 3' termini, respectively;
CC   ATREP5 and ATREP1 share 20 bp and 30 bp-long 5' and 3' termini;
CC   ATREP6, ATREP7, ATREP8 and ATREP9 share common termini longer than
CC   100 bp.
XX
SQ   Sequence 2099 BP; 870 A; 234 C; 225 G; 770 T; 0 others;
     atcctactat attatttggg aagtacattt taaatgtaac cttaattttt gtaagtaatt        60
     acataggtat gccattagaa ataaaatttt aaagagtaaa ttaatttatc tctttaagga       120
     ttaaaaagtc aaatactaat ttaattaatt aaatttaatt aaaaaacgaa atacattatt       180
     aatttccaaa aataataacc aatcaaaatc aacatataag atttgatatc taaattttaa       240
     ttaatttaat ttaattagaa aaacgaaata cattattaat ttccaaaaaa gtaaccaatt       300
     aaaatcaaca aattagattt gatatctaaa ttatcatatt aattttttat taattattat       360
     agttcacttc tcatctttat atgattctat ttttgcgaaa aaataatatc atcattataa       420
     aaaaataatt agagtttttt cgcatatgcc ataatttgaa tttttaaaaa cgaatataaa       480
     ctgttcaata catgaaaaaa tattataacg ggtgaaaaat agatttaaga aaactttcta       540
     ctgagtaacg ggtcataatt tgaaatattt atattcaatt tcatacatat tatattgaaa       600
     atttataatc ttatatacta caataattaa taacatatta gattttttta tgtgtatgat       660
     gtgattcaat ttttaataca agctggaaaa tcctagaatt gacgggttta gatcgatatt       720
     aatacaagat ggtatactac aggtgaaact cttaaattaa caatcaaact acaagtgtat       780
     aatcttaaac actaaacaat atagataata tcaacaaaac atatacaact cacagtttac       840
     tatacattta aaatcaaata aaataatatc atatattttt aaatcatctt tacaataaaa       900
     gtttttagtt taactaaaat ataagcctac ctgcggtata ctgcaggtta atatctagat       960
     tatagggctt attggatcta aagacgggtc atcaaagatt tcctaaactg aagcaaaata      1020
     tactgaatat tcaaatatct atctgttacc aaattataaa caaataagtt cgtaaaacaa      1080
     tttaatattt tatatacgaa atcaattaaa tcttaatcac ataaaaatta gcacaaaaaa      1140
     aagtattcaa caattaaaaa attatcaaat ctctgtgtta tataagtttt gatactatat      1200
     tcgaataaag tgtaatatac cttttcaatt tgtattcttt aactaattta agctaactaa      1260
     tatatttgct aatcttatac ctatcaaaac cgactatcgt ttcttatctc tatagtattt      1320
     ttgcaagact tttttggtgg atttggataa aagtgcattc gggtcatatg gtacattccc      1380
     ctattaaata aatatggtgc actcctatgt tattagctaa aatgtttaga ttataattca      1440
     gagtcatatc attaataaaa ttaatattaa taaaataaat ggctttttgg caagacggat      1500
     ttggagggac gggtttttga atcaacatta ataaaaaagt aaaatataat taatccaccg      1560
     tttcaatacg ggttaaatct ttaatttatt attttttaag accactaata ttaaacatat      1620
     caaatcatcc taatttagaa aagattatat aaaaccaaaa atgttatgtg gtatgtataa      1680
     tgttactata tataaaatta aactataaaa tataaatgta ttagagaatg atacaatttg      1740
     caaaactttt atatataaaa aataattctt aaattttaaa aattactact ttaaaaaaaa      1800
     aatcacggga cgggtaaaga aattacagaa cgggttttat tttggaattg ggttatatgg      1860
     tggatgtatt tgaatcaata tttataaaat tttaaaatat tattaatatg ctgttttaat      1920
     aggggttaaa acttcagttt tttaacaatt gtctcatgga ttcgtggtat agcgttactt      1980
     aataacaatt ataaactgta aaatataaat attttataaa aataaaattt gcaagtttta      2040
     atatatatta cttttaaaaa ataaatcgtc ccgcggtata ccgcgggtta aaatctagt       2099
//
ID   ATLANTYS1_I repbase; DNA   ; ATH   ; 10633 BP.
XX
AC   .
XX
DT   27-SEP-2000 (Rel. 5.9, Created)
DT   27-SEP-2000 (Rel. 5.9, Last updated, Version 1)
XX
DE   ATLANTYS1_I is an internal portion of the ATLANTYS1 endogenous
DE   retrovirus - a consensus sequence.
XX
KW   gag; Gypsy-like endogenous retrovirus; ATLANTYS superfamily; RT;
KW   RNase H; integrase; ATLANTYS1_LTR; ATLANTYS1_I.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-10633
RA   Kapitonov V.V., Jurka J.;
RT   "ATLANTYS1_I.";
RL   Direct Submission to Repbase Update (00-SEP-2000).
XX
CC   [1] (Consensus)
XX
CC   ATLANTYS1_I is an internal portion of the ATLANTYS1 endogenous
CC   retrovirus. There are about 10 copies of ATLANTYS1_I in the genome;
CC   they are ~97% identical to the consensus sequence. Long terminal
CC   repeats from ATLANTYS1 are deposited in Repbase Update as
CC   ATLANTYS1_LTR. ATLANTYS1 has generated 5-bp target site duplications.
CC   ATLANTYS1_I encodes a 2030aa polyprotein, ATLANTYS1p1, composed
CC   of gag, reverse transcriptase, RNase H and integrase domains:
CC   ATLANTYS1p1 (exons 75-5635 and 5676, predicted by GENSCAN):
CC   MDPNSSNSSGSGLPVQIPNDDVTDGHLPTDLPLGTKVDAVHNADAEDISQNSNSSGSDQI
CC   TPPPQTRGGERNVTIQPPNGDNPANPSNQVPPRPASELAELRAMIMNLINLTKNQEIAHR
CC   NLAAIVGQQRRDSTRMAHEVERDTAGKEVPPRETGIPAQVPIDLTGTVSPADPTPRTRLD
CC   FASIDVSPPINRQVTFLQAPANALVENLATGNETSTTPAFPRLPVPPLLPLGYSPPRYTW
CC   TRNQTTASSSRIPGNSTQQRTSIANPPSIPRIPGSDLLNSPTDPQAPVDPRNVVDMETFR
CC   NYAAQTNANMAQMHSRMHLAVSDAPDIDRVIEETRRTPFTDRIARFRLRDVGRLRFPEYD
CC   GTSDPKAHLRSFRFAITRAYLTDEENEAGHCRFFAENLVGHALEWFASLEGNSIDTFDQL
CC   AAAFLKQYSVLIEHRTSEADLWSLTQLQNESLRSYVEKFKAIKSKIANLNEEVAIAALRN
CC   GLWFSSRFREELTVRQPVSLDDALHKALHFAKAEEELAVLALRFKESKTQNAPLAIKKPF
CC   KKENQTQGQHTLFAIEEAAEDESPELDLGKYCKYHKKRGHSTEECRAVKKLIAAGGKTKK
CC   GSNPKVETPPPDEQEEEQTPKQKKRERTPEGGDSPPPARRERIDLVFAELDLGGRTGRSV
CC   TTPPPAPHKKNMRFPLRLSKFCRSATEHLSPKRIDFIMGGSQLCNDSINSIKTHQRKADS
CC   YTKGKSPMMGPDHQITFWESETTDLDKPHDDALVIRIDVGNYELSRIMIDTGSSVDVLFY
CC   DAFKKMGHLDSELQGRKTPLTGFAGDTTFSLGTIQLPTIARGVRRLTSFLVVDKKAPFNA
CC   ILGRPWLHAMKAVPSTYHQCIKFPSDKGIAVVYGSQRSSRKCYMGSYELIKKADPVVLMI
CC   EDKLAEMKTVRSSDPSQRGPRKSLITQVCIDESDPKRCVGIGQDLDPAIREDLITFLKEN
CC   KDSFAWSSANLRGISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVHDEVDRLLKIGSI
CC   REVKYPDWLANPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGHELLSF
CC   MDAFSGYNQILMRPDDQEKTAFITDRGTYCYKVMPFGLKNAGATYQRLVNRMFADQLGKT
CC   MEVYIDDMLVKSAREKDHVPQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTERGI
CC   EANPKQIAAFIDMPSPKTAREVQRLTGRIAALNRFISRSTDKCVPFYQLLRKDKKFDWNE
CC   DCEQAFKQLKAYLSEPPILAKPEEGEPLYLYTAVSRTAISGVLVREDHEGQKPIYYVSKT
CC   LIDAETRYPAMEKLALAVVMSARKLRPYFQSHPIVVMTSQPIRTILHSPTQSGRLAKWAI
CC   ELSEYDIEYRTRTSLKAQVLADFVIELPLADLDGTNSNKKWLLHVDGSSNRQGSGVGIQL
CC   TSPTGEVIEQSFRLGFNASNNESEYEALIAGIKLAQGMGIRDIHAHSDSQLVTSQFHGEY
CC   EAKDERMEAYLELVKTLTQQFESFELTRIPRGENTSADALAALASTSDPFVKRIIPVEGI
CC   EHPSIDLTVKHAGMETSATCNFTRVTRSTTAAARALAAAAEAGAAEEEPELGTPEQPASY
CC   EPEPYNDWRIPIIDYIERGITPPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYG
CC   QQTKDLMKSMHEGQCGSHCSGRTLALRIKKQGYFWPTMLADCIAHSLRCDKCQRHAPTLH
CC   QPPEEMSSISSPYPFMKWSMDVVGPMEASGGKKRLKNLLVLTDYSTKWIEAKAFQQVTEK
CC   QVEDFLWENIVCRHGIPYEIVTDNGTNLTSGKIKAFCDKWKIRLTTSTPLLPTSNIKKRL
CC   DSKKSMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPVETIVPSVRRTASPANSD
CC   LNTQMLQDNMDFIDERRDQAMIRVQNYQQAAARYYNSNIKIRRFEVGELVLRKVFSNTRE
CC   LNAGKLGTNWEGPYRITEVVRDGVYKLVKVINGVPELRPWNAMHLKKYHE
CC   The second strand encodes 824-aa protein, ATLANTYS1p2, similar
CC   distantly to ORF3 in the the rice RIRE2 retrovirus. Its C-terminal
CC   portion (position 600-800) is related to a coiled coil
CC   domain present in the myosin heavy chain.
CC   ATLANTYS1p2 is enoded by 8 exons (10596-10576, 10483-10337,
CC   10096-9842, 9676-9385, 9271-9035, 8928-8204, 8130-7981, 7906-7259;
CC   predicted by GENSCAN).
CC   ATLANTYS1p2:
CC   MSGHIGQIPLTERFRGDTRDKSLLMWTAEMERLFSAPHLTVQIRRGEEISAISKIVMSDF
CC   EDSQNKSNHSYGDDSSSSETRSAASPPRVQRRVITLGGMGPIRPPSTRADKPKKKKAAKQ
CC   GGGTPMTNSDLVDLRRRCQVPMCPNFVRHVLALFTRAREVNREFSCHDLLQLCQVKTNAR
CC   SDQGTYYISARPGSLVLGGLKACRDTNWRSKYFFFRVDRHSIGSFDPARITRTWSTNLAR
CC   TKEVTLSETELELLTLLRRGQTDWATFSRDRIVAALAVAPAVPVAPAVPAIVLPAAQLDP
CC   IEEVPRIEPIPEADLPIVPPDSSSTSELPLIRRMRRPSLRVQRANAGAPARAGDLSAAVT
CC   AARNTLAVSSASASASHPSLPEINTGTSAAAGQSDNNQVAQVSGPSAVVRSDGAPSSPKR
CC   ARTQPEVHPAAELVVSDQGVASPREERMEPAAAIPEAAASADRRSSGRSHGGGRGSRGGG
CC   RSSNRSQEVRQTSNSGGGSAGSRPFHWSYTHDRDHPIVEDEAGLANLLRHIKGRNCQVPG
CC   VKNMAEAAAYADMMAKEGQAIAATNKLVALYEQRLSQVPSASELEEGKTLIRELTSSVKA
CC   GQDREVSFQAEIERLKMELSTSKDLEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQR
CC   REELSKKVMDLTSTAQGAKKAVHDAKVELAAAYSKLLAGIKEKWVAKKEYTVLEGQAAEV
CC   ESNLALIDQITKAAIDLTVEKPRLQAELDDLEARCKSKEVSDFTLSKLDLPQVSEISVVR
CC   PMDVDEQGTPIGLDEFGSNKDAFPGGLAEGSGTVFATPAGESRE
CC   ATLANTYS1 forms a distinctive superfamily of GYPSY-like retroviruses
CC   together with RIRE2 and RETROSOR1 found in the orysa sativa and
CC   the sorghum bicolor genomes. These retroviruses have ~10 kb internal
CC   sequences and their second strands encode a structural-like
CC   protein with a coiled coil domain.
XX
SQ   Sequence 10633 BP; 3062 A; 2988 C; 2411 G; 2172 T; 0 others;
     tttggcgccg tctgtgggga cggaaataga tcattccaac accgaaacta acacatcaat        60
     tgtgaccaac gatcatggat cccaattcat ccaattcatc gggatctggc ttaccagttc       120
     agatcccaaa cgatgacgtt acggacgggc acctcccaac ggatctccct ctcggaacca       180
     aggttgatgc tgtccataac gctgatgcgg aggacatctc ccaaaactcg aattcttctg       240
     gatctgacca aatcactccc cctccgcaaa caaggggcgg agaacgaaac gtcacgatac       300
     agcctccaaa cggagataac ccggccaacc cgtctaatca ggtccctccg cgacctgcca       360
     gcgaattggc cgagctccgc gcaatgatca tgaacttgat caacttaacc aaaaaccaag       420
     aaattgcgca tcgcaacctc gccgcaattg tgggtcagca gagacgcgac tccactcgca       480
     tggcacatga ggtagagcgc gataccgcgg gtaaggaagt tcccccccgc gaaactggga       540
     ttcctgccca ggtccccata gatctgacag gtaccgtctc cccggccgat cctactccga       600
     ggactcgtct ggacttcgcc tcgatagacg tctcacctcc tatcaaccgg caggtcacct       660
     ttttacaggc acctgcgaac gctctcgtcg aaaacctggc aacaggaaac gagacaagca       720
     caacgcctgc cttcccaagg ctaccggtcc cacctttact accgctgggc tattcgcctc       780
     ctaggtacac gtggacgaga aaccaaacaa ccgcgtccag ttcccgcatt cccgggaact       840
     caacgcaaca acggacctct atcgctaatc cgccatccat tccccggata ccaggaagcg       900
     acctccttaa cagtccaacc gatccccaag caccggtcga tccgcgtaac gtcgtagata       960
     tggaaacatt ccgcaattac gcagctcaaa caaatgcgaa catggctcaa atgcattcgc      1020
     gaatgcatct agcagtgagc gatgctcccg acatagatcg cgtgatcgaa gaaaccaggc      1080
     gcaccccgtt cacggatagg atcgctcgtt ttcgcctccg agacgtcggg agactccgtt      1140
     tcccggagta cgacggaacg agcgacccaa aggctcatct gagatccttc cgtttcgcta      1200
     taacacgagc gtacctgaca gacgaagaaa acgaagcagg tcattgccgt ttcttcgcag      1260
     aaaacctcgt aggtcacgcc ctcgaatggt ttgctagcct cgaagggaac tccattgata      1320
     ccttcgacca gctcgccgcc gctttcttaa aacagtattc ggtacttatc gaacacagga      1380
     cgtctgaagc cgacctctgg agtctcactc aacttcagaa cgaatccctg cgatcttacg      1440
     tcgaaaaatt caaagcaatc aaatcgaaaa ttgcaaacct aaacgaggag gtagccatag      1500
     cagcccttcg taacggtctg tggttctcct ctaggttccg tgaggaactc actgttaggc      1560
     aaccagtctc tttagacgat gcccttcaca aagctctcca cttcgccaaa gccgaagagg      1620
     agctcgctgt gctggcctta cgattcaaag aatctaaaac gcaaaacgct ccccttgcaa      1680
     ttaaaaaacc cttcaaaaag gaaaaccaaa cgcaagggca gcatacctta ttcgcaatag      1740
     aagaggcagc tgaggacgag agtccagaac ttgacctcgg aaaatattgc aagtaccaca      1800
     agaaaagagg acattccacc gaggagtgtc gcgccgttaa aaaattaatc gcagctgggg      1860
     gcaaaactaa aaaaggttca aaccccaaag ttgaaacccc tcctcccgac gaacaggagg      1920
     aggagcaaac tcccaaacaa aagaaacggg aacgaacacc ggagggaggt gactctcccc      1980
     cacccgctag gagagaacgc atagacctag tctttgcaga actcgatcta ggtggcagga      2040
     caggaaggtc agtcaccaca cctccccccg ccccgcataa gaaaaacatg aggtttccat      2100
     tacgcctctc gaaattctgc agaagcgcaa ccgagcacct ctccccgaaa cgcatcgatt      2160
     tcatcatggg agggtctcag ctctgcaacg actcaatcaa ttcgatcaaa actcatcaga      2220
     ggaaggcaga ttcctacaca aaaggcaaga gcccgatgat gggacctgac caccagatca      2280
     cattctggga aagcgaaacc accgacctcg ataaacctca cgatgacgct ctcgttattc      2340
     gaatcgatgt aggcaactac gaactctccc gtataatgat cgacacggga agctcagttg      2400
     acgtactctt ttacgacgcc ttcaaaaaaa tggggcacct cgattccgag ctgcaaggca      2460
     gaaaaacgcc acttaccggg ttcgctggag atacgacctt ttctctagga accatccagc      2520
     tcccaaccat cgcacgagga gtgaggcgac tcacgagttt cctcgtagtc gacaagaaag      2580
     ctcctttcaa cgcaatactg ggaagaccat ggctacacgc catgaaagcc gtcccatcaa      2640
     cctaccacca atgcattaaa ttcccctcgg acaagggaat agcagtcgta tacggcagcc      2700
     aacgcagctc ccgaaaatgc tatatgggca gctacgagct tatcaaaaaa gctgaccccg      2760
     tagtactaat gatagaagac aaactcgcgg aaatgaaaac agtcagatcc tctgatcctt      2820
     ctcaacgcgg acctcgaaaa tcattgataa cacaggtctg catagacgaa tcagatccca      2880
     aacgatgcgt tgggataggt caagacctcg acccagcgat acgagaggat ctcataacct      2940
     ttctcaaaga aaacaaagac agctttgcct ggtcaagtgc gaacctccga ggaataagcc      3000
     tcgaggtaac ctcacacgaa ctcaacgtcg atccgaccta ccgacctata aagcagaaac      3060
     gtcgcaagct aggtcccgaa agggctaaag ctgtgcacga tgaggtcgat cgattgctca      3120
     agatcggatc gataagagaa gtaaaatacc ctgactggct cgccaacccg gtcgtcgtta      3180
     aaaagaaaaa cgggaagtgg agagtatgca tcgactttac ggacctgaat aaggcatgtc      3240
     ctaaagacag tttcccactc ccacatattg accgactggt cgaagccact gcgggacacg      3300
     aactattgtc cttcatggat gcattctccg ggtacaacca aatacttatg cgcccagatg      3360
     accaagaaaa aacagctttt attactgacc gaggcaccta ctgttataaa gtaatgccct      3420
     ttggtttaaa aaacgctgga gctacttacc aaagattggt gaacagaatg ttcgccgacc      3480
     agctaggtaa aacgatggag gtctatatcg acgacatgct ggtcaagtca gctcgcgaaa      3540
     aagaccacgt cccgcaatta agagaatgct tcaaaatcct aaacaaattc gagatgaagc      3600
     taaaccccga gaaatgctct ttcggagttc cctcaggaga attcctcgga tacctagtaa      3660
     ccgaaagagg catcgaggcc aatcctaagc agattgcagc cttcatcgac atgccatcgc      3720
     caaaaacggc acgggaggtc caacgactaa ccggccgtat cgccgccctc aacaggttca      3780
     tatccaggtc taccgataaa tgcgtccctt tctatcagct cctccgaaag gataaaaagt      3840
     tcgattggaa tgaggactgc gagcaagcct tcaaacaatt gaaagcatac ctgtccgaac      3900
     cacccatact cgcaaaaccc gaagaaggag aaccgttgta cctgtacacg gcagtctccc      3960
     gaaccgcgat aagcggcgtc ctggtgagag aagatcacga aggacagaaa ccgatctatt      4020
     acgttagtaa aacgttgata gacgctgaaa cccgttatcc agcaatggaa aaactggcac      4080
     tggccgtagt catgtcagct cgaaaactga gaccatattt tcaatcacat cccatcgtag      4140
     tgatgacgtc tcaaccaatc agaaccattc tgcacagtcc aactcaatca ggtcgacttg      4200
     caaaatgggc catagaacta agtgagtacg atatagaata tcgcaccaga accagcttga      4260
     aagcacaggt cctagccgac tttgtaatcg agctcccgtt agcggacctg gatggaacca      4320
     actccaataa gaaatggctc ctccacgtcg atggctcctc caaccgacag ggatccggag      4380
     taggaataca actcacctcc cccaccgggg aagtcatcga acaatcgttc cgactcggat      4440
     tcaacgcatc aaacaacgag tctgagtacg aagccctcat tgctggcatt aagctagctc      4500
     aaggaatggg gatccgcgat atacacgccc atagcgactc ccaactcgtc accagccagt      4560
     tccacgggga atatgaagct aaagacgagc gcatggaagc gtacctcgaa ctagtcaaaa      4620
     ccttgaccca acagttcgaa tcgttcgaac tgaccaggat ccccagagga gaaaacacct      4680
     ctgcagacgc cttggcagct ctcgcctcca cgtcagatcc tttcgtcaaa agaattatcc      4740
     cggtcgaagg aatagaacac ccgagcatcg acctaacggt caaacacgct gggatggaaa      4800
     cctcggcaac ttgcaacttt acgcgagtaa cccgaagcac caccgccgcg gctagagccc      4860
     tcgcagcagc cgcggaggca ggtgcagcgg aggaagagcc ggagctcgga acccccgaac      4920
     aacctgcctc gtacgaacct gaaccgtaca acgactggag aatcccaatc atcgattaca      4980
     tcgaacgagg gatcacacct cccgacaagt gggagaccag aaaactcaaa gcccagagcg      5040
     caaggtactg catcatggaa gggagactta tgaaacgcag cgtcgcaggt ccctatatgg      5100
     tgtgtaccta cgggcaacaa acaaaagacc tcatgaaaag catgcacgag gggcaatgtg      5160
     gtagccactg tagtggacgt accctcgccc tcagaatcaa aaagcaaggc tacttctggc      5220
     caacaatgct agccgattgc atagctcatt cactcaggtg cgataaatgc caacgacatg      5280
     cacctactct tcatcaacct cccgaggaaa tgtcctcgat atcttctcct tacccattta      5340
     tgaagtggtc catggatgtc gtaggtccca tggaagcctc cggtgggaag aagagactaa      5400
     aaaacctgct ggtcctcacc gactactcta ccaaatggat tgaggctaaa gccttccaac      5460
     aggtaaccga gaaacaagtc gaggacttcc tatgggaaaa tatcgtatgc cgacatggca      5520
     taccttatga gatcgtcacc gataacggga ctaacctcac ctcgggaaaa atcaaagcat      5580
     tttgcgacaa gtggaagatc cgtcttacca catccacccc cctgttaccc acaaggtaac      5640
     ggacaggcag aagccgccaa caaagctata cttagcaaca tcaagaaaag acttgattcc      5700
     aaaaaatcaa tgtggtccga cgtgctccac ggagttctct gggcctaccg aactacacct      5760
     cgcaaatcaa cgcaagaaac accgttctct ctcgcctatg gtttagaagc agtaatccct      5820
     gtcgaaacca tagtaccaag cgtgagaagg accgccagtc ctgctaactc ggacctgaac      5880
     acgcaaatgt tacaggacaa catggacttc atcgatgaac gcagagatca ggcaatgatc      5940
     cgagttcaaa actatcaaca agctgccgcc cgctactata actccaatat caaaattcgg      6000
     agattcgaag tgggagagct cgttttacga aaagtgttca gcaacacgag agagctaaac      6060
     gctggaaaac tgggaactaa ctgggaaggt ccctatcgaa tcaccgaggt ggtacgtgac      6120
     ggcgtctata agctcgtaaa agttatcaac ggagtacctg agttacggcc ttggaatgcc      6180
     atgcatctca agaaatacca cgaataggta ctcaaaaaca atcgaactac gataaggctt      6240
     gatcccttgg cagggtacgt aggcagctcc ccccaagagc gcagccacca cttcaatcaa      6300
     atcacaaaag ggcttaatcc cctaaccagg tatgcaggca gttccctccg caaacgcaat      6360
     taccatctca acccttccat ttgaaagacg aaacttcaac aagggaaaca gacatcacat      6420
     cttccatcaa cgaagatcag ctgctcacct gacagttcaa tcacccttcg gtatcgagca      6480
     ggtccctgct cgatgatcaa acgccagatc gtcgcttgct ttacctcttt ttgtacttaa      6540
     caatttcgag ataagaataa aagaaaattt tgatactcat tatcatgttt cgcaaaaaca      6600
     atcatttaca ctatgattta aaactcattc gtaatcttac gatacccaaa gcccaacacc      6660
     cgaatgttgg cggatccatt ttgtgatctc gcttccaaaa agtcgatagt gaactaaact      6720
     tataagaaca catcacttcg gcttcatcgg agctcaccta ctacaaccat atctaactct      6780
     ttcgctatca acacataaca tagtaaacaa ggaagaaacg aaggtttcat tcgcgacctg      6840
     gcgataccac aagcccagct cccaaaatct ggcaggtccc ttgtgtgacc tcacttcaac      6900
     aggttcccga gacaaaacaa ctcaaactca ctcaaagttt taaccttcga agaacatacc      6960
     atatcacatc cgaaataact tggactcgaa acaagtccaa ttattatccg gaacgtggac      7020
     aaagcgaggt gatcatacac caaaatcaac gaagtgtcaa cactcgaacg aaagacaaaa      7080
     aatacttgct aaaaaggata aaagccttcc caggcatcca agtacttaaa cgaacaaagg      7140
     ataaaagcct tcccaggcac caagttcaaa aagcaataaa cgaaaggata aaagccttcc      7200
     caggcattaa gtctgaaaca aaacacaaaa tcctaaaaca aacaaggagc gaaagtgatc      7260
     actccctcga ttctccggct ggcgtagcga agacagtacc agaaccctcc gcgagacctc      7320
     ccggaaacgc gtctttgttg ctcccgaact catccaagcc aattggcgtc ccttgctcgt      7380
     cgacgtccat cggacgtacc accgaaatct ctgaaacctg cgggagatcc aacttgctta      7440
     gagtaaagtc tgatacctcc ttcgatttgc accgcgcctc taggtcatcc agctctgctt      7500
     gcagccgagg tttctccacg gtcagatcga tagcagcctt tgtgatctgg tcgatcaaag      7560
     ccaggttcga ctccacctcg gccgcttgcc cctccagcac cgtgtactcc tttttggcga      7620
     cccacttctc cttgatccca gctagcagct tcgaatacgc agcagccagc tcaaccttag      7680
     catcgtgaac cgccttcttc gccccttgtg cagtcgaagt caggtccatc acctttttgg      7740
     agagctcttc cctcctctgc tccaagcgat gaatctggtt cctcgccgtc tgcttgtcgg      7800
     cttgcaaccc cccgatctcc atctccatga acccgatctt ctcagcataa cctttctcga      7860
     ggtcttttga agtggacagc tccattttca gcctctcgat ctccgcctga aatcacaatc      7920
     aggtcagaat catcgaatca tcgacgaatt atatacaaac aagtcaaaac cgaggtgtac      7980
     ctggaacgag acttcgcgat cctgaccagc cttcacactc gacgtcagct cccggatgag      8040
     ggtctttcct tcttcgagct cactcgccga ggggacctgg ctcagacgct gctcatagag      8100
     agcgaccagc ttgtttgtgg cagctatcgc ctaccgaaag caaaacagaa agtcacaact      8160
     agcataaaga tggaattaga aggagacagt tatcgattat tacctggccc tccttcgcca      8220
     tcatgtcagc ataggccgcc gcctcggcca tgttcttcac tccaggaacc tggcagttcc      8280
     tccctttgat gtggcgaagc aggttcgcca acccagcctc gtcctcaacg atcgggtgat      8340
     cacggtcgtg agtgtaagac cagtggaaag gcctgcttcc cgcggatcct ccgccggagt      8400
     tggacgtctg cctcacttcc tgagaccggt ttgaagacct gcccccacct ctggagcctc      8460
     gtcctccgcc atgggacctg cccgaggatc gcctatccgc ggacgcagct gcctccggaa      8520
     tagcagccgc aggttccatc ctctcctctc tgggagaggc gaccccctgg tcgctcacga      8580
     ccaactcagc cgccggatgc acctccggct gggtccgagc tctcttcgga gaggacggtg      8640
     caccatcaga acgaacaact gcagatggcc cagacacctg agcgacctga ttgttatctg      8700
     actgacctgc tgcagcagag gtcccggtat tgatctcagg aagcgaggga tgagatgctg      8760
     aggcagatgc gctggagaca gctagagtgt ttcgagccgc ggtcaccgcg gccgacagat      8820
     caccagcacg agcaggagcc ccggcgttgg ctcgttgaac acgaagactt ggacgcctca      8880
     ttcttctaat gagcgggagt tctgaagtgg agctggagtc aggaggaact gaacagacaa      8940
     agcacgacat gtgttagtta gcagctcgag ttgcgcagct gtctcgataa ctcgtacatt      9000
     ttttaaacca aagaaaatat aacggaactc gtacctatag gcagatcagc ctcggggatc      9060
     ggttcaatcc gcgggacctc ttcgatcgga tctagctgtg ctgctggaag gacgattgcg      9120
     ggaactgctg gagctacggg aactgctgga gctacggcaa gagcagctac gatgcgatct      9180
     ctgctaaaag tggcccagtc agtctgacca cgtcggagaa gggttaacag ctcgagttcc      9240
     gtctccgaga gagtaacttc cttggtcctt gctgcaaacc atcaaaaaca aacaattagt      9300
     ttcagtacta acgttcagca aaagcagtca aggattcgac acaaacaaca aagaaaaatc      9360
     aagaggctca ggtctccatc tgacccaggt tggtagacca ggtccttgtt atcctcgcgg      9420
     gatcaaaact gccgattgaa tgacgatcta ctctgaaaaa gaagtacttg gatcgccaat      9480
     tggtgtctcg acaagccttc aaaccgccga ggaccagaga tccgggacga gcactgatgt      9540
     agtacgtccc ctggtcgctc ctagcattgg tcttgacctg gcagagctga agcaggtcat      9600
     ggcagctgaa ttctctgttt acttcccgag cccgggtgaa taacgccagc acatggcgga      9660
     cgaagttcgg gcacatctgg ggaaaggcga ggccgagaca gtagagcatc tcgaggatac      9720
     acgccggaat cgggaaaaat aggccacatt tctcgaagaa attggcataa gcgcagcacc      9780
     acccgaccgg cacgttctca ggatgcagcg gcggccttgg gagtatcata gttaccccca      9840
     ccggaacctg gcatctcctc cggaggtcga ccaggtcgct gttcgtcatc ggcgtgcctc      9900
     ctccttgctt ggcagccttt ttcttcttcg gcttgtcggc tctggttgac ggcggacgaa      9960
     ttggacccat tccgcctagg gttatgacgc gtctttgtac tcgcggcggt gacgccgccg     10020
     acctcgtctc ggacgaactt gaatcgtcgc cgtaactgtg gttgctttta ttctgggaat     10080
     cttcgaagtc gctcatcttt gggtttcgac agagaaggac gagagagatg aaagaaaaga     10140
     gcaaagaagg cagatcgaga aagagggaat agcagagaaa cgaaggagat agcaaaaaaa     10200
     ataaagacga gatttttcta cctctacaaa acaaagcgca gtaaataata aaggaggaga     10260
     gaagttacct tgagagttgt gtgagttgac gtgacgtcaa gtggagaggt gggaagttat     10320
     ttaaagccat catcaccacg attttcgaga ttgcagagat ctcttctccg cgcctgatct     10380
     ggaccgtcag atgcggtgcg ctgaagagac gctccatctc agccgtccac atcagcagcg     10440
     acttatctcg cgtatctcct cgaaatcttt cggttaaggg aatctgaaat taaatcgaaa     10500
     ttgttgagtt tatcctcaaa accgactgat cttatcacat ttatcttctc atcaagaata     10560
     ttttcgcaat cttacctgac ctatatgtcc gctcatcgag ttcgcctact cactcaatgg     10620
     gctggggggc aaa                                                        10633
//
ID   ATHAT2      repbase; DNA   ; ATH   ; 3573 BP.
XX
AC   AL132953;
XX
DT   08-JAN-2001 (Rel. 6, Created)
DT   08-JAN-2001 (Rel. 6, Last updated, Version 2)
XX
DE   ATHAT2 autonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; HAT superfamily;
KW   Autonomous DNA transposon; transposase; ATHAT2; Atac2.
XX
OS   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-3573
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements from Arabidopsis
RT   thaliana.";
RL   Genetica 107(1-3), 27-37 (1999).
XX
RN   [2]
RP   1-3573
RA   Kapitonov V.V., Jurka J.;
RT   "ATHAT2.";
RL   Direct Submission to Repbase Update (00-JAN-2001).
XX
DR   GenBank; AL132953; Positions   34952   31380.
XX
CC   ATHAT2 is a fossilized HAT-like autonomous DNA transposon.
CC   There are at least two almost complete copies of
CC   the transposon fossilized in the genome. They are 93% identical
CC   to each other.
CC   ATHAT2 is flanked by 8-bp target site duplications.
CC   ATHAT2 has 14-bp terminal inverted repeats and encodes the
CC   656-aa ATHAT2p transposase.
CC   CDS join(349..414,742..1098,1204..1615,1697..1978,
CC   2041..2871,2960..2982)
CC   The ATHAT2 70-bp 5' and 140-bp 3' termini are ~70% identical
CC   with corresponding termini of the non-autonomous transposons
CC   ATHATN1-ATHATN5.
XX
FT   CDS           join(349..414,742..1098,1204..1615,1697..1978,
FT                 2041..2871,2960..2982)
FT                 /product="ATHAT2p"
FT                 /translation="MEFLSSLSSQSPPSEASSNRSRMDSSPFPSNSDVGN
FT                 EKVTEPESDAANKRKDVQEDSGATSKPPKTKKPSQRSFVWDHYTRFEDNP
FT                 KRCKCNYCHRTYGCDSKDGTSNLKNHLRICKHYQAWSQKAKQTVFNNQGH
FT                 LQSGKVNLYAPHSRRTCMKDIVKMYVGMKASLKTWIATTNPRVSLTTDIW
FT                 TAKATVASYMVITAHFVDSAWKLRKLIIGFKYITDHKGATIARILLECLA
FT                 ECGIEKIFTITVDNETTNTSALKKFQETFSLRSNEAFVLEGEAIRNSVQY
FT                 VRSSTSRCDSFDQKVVSGKMTRGSLPLDIKTRWNSTYLMLKRAMEFRLAF
FT                 DKMEAEDKLYNDYFNEVDDGKARSGHLQELIGMQSRVASYKCYGEIVTIE
FT                 TNLVSLGNNFDRDLKIKAKAMLGKFVKYWDGTRNINVYLIVASVFDPRKK
FT                 MQFANMCFAKLYGKDTTDAKEMAEKVNNVLTSLFKEYSSRFQKTSSGSGP
FT                 SSQSTQTSITASQGEPSDLMSDSMGYERMDFAYKELVDEIGVDDGRDELD
FT                 VYLKEKVENPKTIIGLEWEVLSWWKLNCGRFPVLSAITKDVLAMQVSSVA
FT                 SESAFSNSGRVIEPHRSCLTHYMVKVLLCTEQWMKNVNHLGNKSVVTIKE
FT                 LLADIVELDNIEKEFDGNSA*"
XX
SQ   Sequence 3573 BP; 1077 A; 581 C; 745 G; 1170 T; 0 others;
     taagcctggg cgtttaatcc gaatccgata aaccgaaccg catccgaact gggaaaatcg        60
     gattaaaaac cgaaccgaat ccgctcaatt aaccgttcgg ttattgattt ctatatccac       120
     ggttatcgga ttttatccga tccgaaccga aataatatgg ctatccgaaa ccaaccgaag       180
     aacttcttct atacactact ctttagcctt cgaagtctgg atccacttcc cttatgatga       240
     ttatcaaaca atatgattcg atccacttcc ctaatcttct tgattttcct agcaatacgg       300
     gatccacttc ctctagatta taaccataaa accctaagct ctttcaatat ggaattctta       360
     agctctcttt cgtcacaatc gcctccatca gaagcatcaa gcaatcgatc tcgggtatgt       420
     gtttgaactt caattcttct tcttcattag ctatcgtctt tgttctttga ttcttcttct       480
     tcattagaaa aaaaattgaa actcatttaa attgatttag tcatatagct aatgataaat       540
     tctttgtttg gattttaaaa atttgtgtat gttggagtta aattcttagt cgattctaat       600
     cctcttgttg tgtcaatgga tgtttgttga gtagcaagag tatatttttg attgtgagag       660
     tatagttttg agtagtgaac gtatatttag atggattctc attattctta tgttaaaact       720
     tctcattatt cttatgttta gatggattca tcaccatttc caagcaacag tgatgtgggg       780
     aatgagaaag tgactgaacc tgaaagtgat gctgctaaca aaaggaagga tgttcaggaa       840
     gatagtggag ctacttcaaa accacctaag acaaagaaac caagtcaaag gtcgtttgtc       900
     tgggaccatt acacgagatt tgaagataat cctaagagat gcaagtgcaa ctattgtcac       960
     agaacctacg gatgtgattc taaagatggg acttcaaact tgaagaatca tcttcgaatc      1020
     tgcaagcatt atcaagcatg gagtcagaaa gcaaaacaaa ctgttttcaa caatcaggga      1080
     catcttcaga gtgggaaagt tacataggag attttaagag aagcttcaaa tgagatgctt      1140
     gtgctgggag aattaccact ttctttcatt gaaagcgcgg cttggaaaca tttatgtgaa      1200
     aaggtaaacc tctatgcgcc acattctagg agaacttgta tgaaagacat tgttaaaatg      1260
     tatgtgggaa tgaaagcatc tctgaagact tggattgcga ctactaatcc aagagtctct      1320
     ttgacaacag acatctggac agctaaagct acagttgcta gttacatggt gattactgct      1380
     cactttgttg attctgcttg gaaattaagg aagctaatca ttgggtttaa gtacattacg      1440
     gatcacaaag gtgcaacaat agcaaggatt cttcttgagt gtttggctga gtgtggaata      1500
     gagaagattt tcactatcac agtggacaat gaaacaacaa acacttctgc tttgaagaaa      1560
     tttcaagaaa cattcagctt aaggagtaat gaagcatttg ttttagaagg cgaaggtatg      1620
     catgtgaggt gtgctgctca cataatcaat ttaattgtca aggagggttt ggttgaattg      1680
     ggtgatcatg tggcagccat acgcaattca gtgcagtatg tgaggtcttc tacttcaagg      1740
     tgtgattcat ttgaccagaa agttgtctca ggcaagatga ctagagggag tttaccgttg      1800
     gacatcaaaa caaggtggaa ctctacttac ttgatgctga aaagggctat ggagttcagg      1860
     ttggcatttg ataaaatgga agctgaagat aagttgtata atgactactt caatgaagta      1920
     gacgatggaa aagcaagatc gggccaccta caagagctga ttggaatgca gtcgagaggt      1980
     tagtgagatt tctgatcata ttctacaact ccactttggt cgtgtctgct tctaattcag      2040
     tagcttctta taagtgctat ggtgagatag tgactataga gacgaatttg gtgtcactag      2100
     gcaataattt tgacagggat ctgaaaatta aggctaaagc tatgttagga aaatttgtta      2160
     agtattggga tggaacaaga aacattaatg tttatctgat agttgcaagt gtctttgatc      2220
     caaggaagaa aatgcagttt gctaatatgt gttttgcaaa gctttatggg aaagatacta      2280
     ctgatgctaa agagatggct gaaaaggtca acaatgtttt gacttccttg tttaaggagt      2340
     atagtagtcg ttttcagaaa acatcaagtg gtagtggtcc atcatcacag tccactcaga      2400
     cttcgattac tgctagccaa ggtgagccct ctgatttgat gtctgatagt atggggtatg      2460
     agaggatgga ctttgcttat aaggagttgg ttgatgagat tggggttgat gatggtaggg      2520
     acgagttaga tgtgtatttg aaggagaaag tggagaatcc taaaactatc attggattag      2580
     agtgggaagt actttcttgg tggaagctca attgtggtag gtttcctgtt ttgtctgcaa      2640
     taactaagga tgtccttgca atgcaagtgt catcggttgc atctgaaagt gcttttagta      2700
     acagtggtcg agtcatagag ccacatagga gttgtttaac tcattatatg gttaaagtgt      2760
     tgttgtgcac agagcagtgg atgaagaatg tgaatcactt aggtaataaa tctgttgtta      2820
     ccattaaaga gttgcttgcc gacattgttg agctagataa cattgaaaaa ggtaaattca      2880
     tcccttatgc tctatttcaa ttctctctta atagttttaa ttgttcacag ttttaatttc      2940
     ttgtttttct tgattacaga gtttgatggc aactctgctt agaagactct tatcctcaaa      3000
     ctttttaatc ggctataagg taaattgttt taaacttgat gtttttgatt catgtatttc      3060
     atagattaag aagttaagta ttttgttgta tcaaggttca agaacatggt gaagtttgag      3120
     aatgcggcaa agaagaagct tgaggttgct gttgttggct tgttttcact ctctttcact      3180
     ttttttttta ctactttcca attgaattct gctacttctt cactctttaa gatgttatgg      3240
     tttacttttc tttcaaaact ttgatgtatt ggcatagttt atgcctcact ttggtttcaa      3300
     aaactttatg gtttgctttg ctatggtttc atttcatcta ctcatttttt gcatagctcg      3360
     ttttttcggt ttaagttcgg attaatatcg gttattcggg ttcaatcgga tgttaaatat      3420
     catattcata ccgatccaaa atccaaaata tctaaaccga aaccgatccg aattttataa      3480
     ttatccatat ggatattaga atctaaatcc aaaataaccg aaatccgaaa caaccaaacc      3540
     aaatccgatt cgataaccga acgcccagac cta                                   3573
//
