ID   AFROSINE    repbase; DNA   ; MAM   ; 160 BP.
XX
AC   .
XX
DT   19-2003 (Rel. 8.11, Created)
DT   20-JUL-2005 (Rel. 8.11, Last updated, Version 2)
XX
DE   SINE elements from African endemic mammals - a consensus sequence.
XX
KW   SINE; Interspersed Repeat; AFROSINE.
XX
OS   Proboscidea
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; asterids;
OC   lamiids; Lamiales; Martyniaceae.
XX
RN   [1]
RA   Nikaido M., Nishihara H., Hukumoto Y., Okada N.;
RT   "Ancient SINEs from African Endemic Mammals.";
RL   Mol. Biol. Evol 20(4), 522-527 (2003).
XX
RN   [2]
RA   Nikaido M., Nishihara H., Hukumoto Y., Okada N.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (08-NOV-2002)Masato Nikaido, Tokyo
RL   Institute of Technology, Graduated school of Bioscience of
RL   Biotechnology; 4259 Nagatsuta-cho Midori-ku, Yokohama, Kanagawa
RL   2268501, Japan (E-mail:mnikaido@bio.titech.ac.jp, Tel:81459245742,
RL   Fax:81459245835).
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "AFROSINE consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 92%.
XX
SQ   Sequence 160 BP; 41 A; 38 C; 42 G; 38 T; 1 others;
     tgctaaccaa aaggtcggca gttcgaaacc accagctgct ccaygggaga aagatgtggc        60
     agtctgcttc cgtaaagatt tacagccttg gaaaccctat ggggcagttc tactctgtcc       120
     tatagggtca ctatgagtcg gaattgactc catggcagtg                             160
//
ID   SATI_OC     repbase; DNA   ; MAM   ; 376 BP.
XX
AC   AF498006; AF498007; AF498008; AF498009; AF498010; AF498011; AF498012;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Oryctolagus cuniculus monomeric satellite I - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SATI_OC.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RA   Ekes C., Hadlaczky G., Cserpan I.;
RT   "Identification of two rabbit centromeric satellite DNA families.";
RL   Unpublished.
XX
RN   [2]
RA   Ekes C., Hadlaczky G., Cserpan I.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-APR-2002)Institute of Genetics,
RL   Biological Research Center, Temesvari krt. 62., Szeged H-6701,
RL   Hungary.
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "SATI_OC consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 95%.
XX
SQ   Sequence 376 BP; 130 A; 70 C; 74 G; 98 T; 4 others;
     aagctttctt cctagaaaac tcgaatgtgt ggaggatttg actccaggtg gaaccaatta        60
     gcgtttgcca gcagaaaaca aaaacktaca tgctaaaatg cattcaaaac cgtaaagtcc       120
     atagagaatg tccagaaaac acaaacacac acagaggctg tagcaagatc tgggattgag       180
     atagccacaa cacaccagat agttttgttt tcatccagga gtatctggac aaattgttgt       240
     rgatttgarg tgaaatttaa ccaaaaatca ccgtgaaagt ggttttggag aaaagcacaa       300
     tcttcctgtt cggcaaatgc atccaatgtc atgtttacag aaasaaatat catgttttct       360
     caggtttctg aagctt                                                       376
//
ID   TIGGER2     repbase; DNA   ; MAM   ; 2718 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 2)
XX
DE   Autonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat;
KW   Autonomous DNA transposon; TIGGER2; Tc1/mariner supergroup.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-1998).
XX
CC   [2] (Consensus)
XX
CC   TIGGER2 is a pogo-like DNA transposon of the mariner-Tc1 family.
CC   The open reading fraim from pos. 603-2486 encodes a transposase 59%
CC   identical to that of TIGGER1. Average divergence of copies 12%.
CC   24 bp terminal inverted repeats, TA target site
CC   Includes MER28 (bases 1 to 59; 2343 to 2708) (see there for refs).
XX
SQ   Sequence 2718 BP; 882 A; 549 C; 585 G; 700 T; 2 others;
     cagttgaccc ttgaacaaca cgggtttgaa ctgcgcgggt ccacttatac gcggattttt        60
     ttcaataaat atattggaaa attttttgga gatttgcgac aatttgaaaa aactcgcaga       120
     cgaaccgcgt agcctagaaa tatcgaaaaa attaagaaaa agttaggtat gtcatgaatg       180
     cataaaatat atgtagatac tagtctattt tatcatttac taccataaaa tatacacaaa       240
     tctattataa aaagttaaaa tttatcaaaa cttacgcaca cacttacaga ccgtacatgg       300
     cgccattcgc agtcgagaga aatgtaaaca aacgtaaaga tgcagtatta aatcataact       360
     gcataaaatt aactgtagta catactgtac tactgtaata atttcgtagc cacctcctgt       420
     tgctattgcg gtgagctcaa gtgttgcgag tatccgctta aaacgccatg tgacgctaat       480
     catctccgcg tgagcagttc gtctctccag taaattgcgt atcgcagtaa aaagtgatct       540
     ctcgcggttc tcgcgtattt ttcatcgtgt ttagtgcaat accgtaaacc ttgaataaca       600
     ccatgggacc catacgaagt gccactagtg atgctggaag tgctcccaag aagcagagaa       660
     aagtcatgac attacaagaa aaagttgaat tgcttgatat gtaccgtaga ttgaggtctg       720
     cagctgcggt tgcccgccat ttcaagataa atgaatccag cataaggacc attgtaaaaa       780
     aagaaaagga aattcgtgaa gccgtcgctg cagctatgcc agcaggcgcg aaaaccttgc       840
     actttttgcg aaataccttt ttatctcgta ttgaaaatgc agcttttatg tgggtgcagg       900
     attgctataa gaaaggcata cctatagact ctaatatgat tcgagaaaaa gcgaagtcat       960
     tatatgacaa cttaaagcaa aaggaaggtg aaggatctaa agctggagaa tttaatgcca      1020
     gcaaaggatg gtttgataat tttagaaaga ggtttggctt naaaaatgtc aagataacag      1080
     gagaagcagc ttctgccgac caagaggcag cagacgagtt cccagatgcc attaagaaaa      1140
     tcattgagga gaaaggatat ctgcctgaac aggtttttaa tgcagacgaa agtgccctat      1200
     tctggaggaa aaaaatgcca caaaggacat ttattagtaa ggaagagaag caagcaccag      1260
     gatttaaggc aggaagggat aggctaactc tactgttttg tgcaaatgca gtcgggttta      1320
     tgatcaggac tgcccttatc tataaagctg ctaacccccg agccttgaag ggaaaagata      1380
     aacaccagct gccagtcttt tggttgtaca acaagaaggc ctggacaacg agaacccttt      1440
     ttctggattg gttccatcga tgctttgtcc ctgaagtcag gaagtacctt gccagtaagg      1500
     gactgccttt taaagttctt ttgatattgg acaatgcccc tggccaccca gaaccccatg      1560
     agttcaacac cgaaggcgtc gaagtggtct acttgccccc aaacacaacg tctctaattc      1620
     agcctctaga tcagggggtc ataaggacct ttaaggctca ttacacacgg tactctatgg      1680
     aaaggattgt caatgctatg gaagagaacc ccaatagaga gaacatcatg aaagtctgga      1740
     aggattacac cattgaagat gccatcgttg ttacagaaaa agccgtgaaa gccatcaagc      1800
     ccgaaacaat aaattcctgc tggagaaaac tgtgtccaga tgttgtgcat gacttcacag      1860
     gatttacgac agagccaatc aaggaaatca tgaaagagat tgtggatatg gcaaaaaagg      1920
     tggggggtga agggtttcaa gatatggatc ttggagaaat tcaagagcta atagacacca      1980
     caccagagga attaacagaa gacgacttga tggagatgag tgcttccgaa ccagtgccag      2040
     acgatgagga agaagacgta gaagaagcag tgccagaaaa caaattgaca ttagacaatc      2100
     tggcagaagg gttccgatta ttcaagactg cttttgactt cttttacgac atggaccctt      2160
     ctatgatacg ggcactgaaa ctaaagcaaa cggtggaaga aggattggta ccatatagaa      2220
     acatttttag agaaatgaaa aagcaaaaaa gtcagacaga aattacgatg tatttccata      2280
     aagttacacc gagtgtgcct gcctctcctg cctccccttc cacctcctcc acctcttccg      2340
     cctctgccac cctgagacag caagaccaac ccctcctctt cctcctcctc ctcagcctac      2400
     tcaacgtgaa gacgatgagg atgaagacct ttatgatgat ccacttccac ttaatgaata      2460
     gtaaatatat tttctcttcc ttatgatttt cttaataaca ttttcttttc tctagcttac      2520
     tttattgtaa gaatacagta tataatacat ataacataca aaatatgtgt taatcgactg      2580
     tttatgttat cggtaaggct tccggtcaac agtaggctat tagtagttaa gttttkgggg      2640
     agtcaaaagt tatacgcgga tttttgactg cgcggggggt cggcgcccct aacccccgcg      2700
     ttgttcaagg gtcaactg                                                    2718
//
ID   L1MC3       repbase; DNA   ; MAM   ; 2487 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC3) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1MC3; L1MC3 subfamily; MER42A; Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1187-2487
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-2487
RA   Smit A.F.;
RT   "L1MC3..";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [2] (Consensus)
XX
CC   Replaces MER42A.
XX
SQ   Sequence 2487 BP; 938 A; 407 C; 481 G; 600 T; 61 others;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgawacya ctatatacgt atannaraat      1200
     taaacaaata agtaaatgta tkgtagatga tgggagccag gtttctcact gtcggagtga      1260
     ggagttacag ataagcaaag ggaggagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccgctg agagggccta gaagcaacga caccccagta gcaatgagca cacctagcac      1440
     ccagatcttg gtttctaata ccattctcca ataaaaggaa ccagggctcc ttggagaaat      1500
     ggctgattct aggactaggg caggaaatat acaagatgag cctggaacat cttgcartgc      1560
     cagaaaataa ggaagtgctc aaaaacacaa tgatrggggt atgtcaaagg gacacagrag      1620
     ccaactgaaa gagctcccaa tggccaaagc tggaacaatt tgagcaacaa aataaattat      1680
     rgtagtattg gattataacy caaagtataa aataaatatc catgagtcca tactgatata      1740
     aatgaatgat taaataaata aataaattga gaagataaat aagtctctnn tgcagaagaa      1800
     tttcaaataa tttatgtaga tarcctnccc tcaaggaagt ggagcgtaac tccccactcc      1860
     ttaagtgtgg gatggatata gtgacttcct tccagaaagc atagtatagg acggaaaaaa      1920
     aagtaaattt acwgtagaga aacctgacaa acactacctt agccaggtaa tcaaagttag      1980
     catcaacaat tgtaagtcat gttgatagya tatacccttg atatgatgtg ataagaatgg      2040
     cacttcacct ccgtggtctt cctcccaaaa acccataacc ccagtctaat catragaaaa      2100
     atatcagaca aattccaact gagggacatt ctacaaaata cctgaccagt actcctcaaa      2160
     actgtcaagg tcatcaaaaa caaggaaagt ctgagaaact gtcacagcca agaggagcct      2220
     aaggagacat gacaactaaa tgtaatgtgg tatcctggat gggatcctgg aacagaaaaa      2280
     ggacattagg taaaaactaa ggaaatctga ataaagtatg gactttagtt aataataatg      2340
     tatcaatatt ggtttattag ttgtgacaaa tgtaccatan taatgtaaga tgttaayaat      2400
     aggggaaact ggatgtgggg tatatgggaa ctctctgtac tatttttgca actttcctgt      2460
     aaatctaaaa ctatttcaaa ataaaat                                          2487
//
ID   LINE_CH     repbase; DNA   ; MAM   ; 1554 BP.
XX
AC   X72221;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   C.hircus LINE element.
XX
KW   Non-LTR Retrotransposon; Interspersed Repeat; CHLINE; LINE element;
KW   LINE_CH.
XX
OS   Capra hircus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Caprinae; Capra.
XX
RN   [1]
RP   1-1554
RA   Jansa M., Leroux C., Sanchez A., Martin P.;
RT   "Occurence of a LINE Element in the 3' UTR of an Allelic Form of the
RT   Goat Alpha S1 Casein Gene Associated with a Reduced Level Protein
RT   Synthesis.";
RL   Unpublished.
XX
RN   [2]
RP   1-1554
RA   Jansa M.;
RT   "LINE_CH.";
RL   Direct Submission to Genbank (27-MAY-1993)M. Jansa, Inst National de
RL   la Recherche Agronomique (INRA), Lab de Genetique Biochimique,
RL   INRA-CRJ 78350, Jouy-en-Josas, FRANCE.
XX
DR   GenBank; X72221; Positions       1    1554.
XX
SQ   Sequence 1554 BP; 418 A; 357 C; 259 G; 520 T; 0 others;
     agtcttgggt tcaagatctt gacaaccatg aaacttctca tccttacctg tcttgtggct        60
     gttgctcttg ccaggcctaa acatcctatc aatcaccaag gactctctcc agaagtcccc       120
     aatgaaaatt tactcaggtt tgttgtggcg ccttttccag aagtgtttag aaaggagaac       180
     atcaatgaac tgagtaagga tattgggagt gaatcaactg aggatcaagc catggaagat       240
     gctaagcaaa tgaaagctgg aagcagttcg tcaagtgagg aaattgttcc caatagtgct       300
     gagcagaagt acattcaaaa ggaagatgtg ccctctgagc gttacctggg ttatctggaa       360
     cagcttctca aactgaagaa atacaacgtg ccccagctgg aaattgttcc caaaagtgct       420
     gaggaacaac ttcacagtat gaaagaggga aaccctgccc accagaaaca gcctatgata       480
     gcagtgaatc aggaactggc ctacttctac cctcagcttt tcagacaatt ctaccagctg       540
     gacgcctatc catctggtgc ctggtattac cttccactag gcacacaata cactgatgcc       600
     ccctcattct ctgacatccc taatcccatt ggctctgaga acagtggaaa ggctgctatg       660
     ccactgtggt gaagagtcaa gtgaattctg aaggactcca caattatggt ctttgatgga       720
     attgaaaatt ccatgcttta catgtctttt catctatcat gtcaaaccat tctatccaaa       780
     ggcttcaatt gctgttttag aataggacaa cctcaaattg aaggcactct ttcttctttt       840
     tttttttttt tttttttttc ttactgaatg acttttttat ttttattttt attttttatt       900
     tatttttttt tatttttttt ttttaatttt taatttttat ttttaaattt taaaatcttt       960
     aattcttaca tgcgttccca aacatgaacc cccctcccac ctccctcccc acaacatctc      1020
     tctgggtcat ccccatgcac cagccccaag caagctgcac cctacgtcag acatggactg      1080
     gcgattcaat tcttacatga cagtatacat gttataattc ccattctccc aaatcatccc      1140
     accctctccc tctccctctg agtccaaaag tctggtatac acatctgtgt ctttttccct      1200
     gtcttgcata cagggtcgtc attgccatct tcctaaattc catatatatg tgttagtata      1260
     ctgtattggt gtttttcttt ctggcttact tcactcagtt ctctactgta ttttagattg      1320
     tgtaacatcc ttaagtgaaa ttgtcctaag agcttgttac ctaaattcca gtagtatcac      1380
     gctggtataa aggccactga ctcaaaggga attacagtct tcattaaatt tctatatgga      1440
     aaatgttttt aaagcctttg aatcacctct cctgtaagtg ccatcatttc aaataactgt      1500
     gtgcagtaac tgagattttg tctttcttct tttcaataaa ttacatttta aggc            1554
//
ID   TIGGER1     repbase; DNA   ; MAM   ; 2418 BP.
XX
AC   .
XX
DT   01-MAY-1996 (Rel. 1.04, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Autonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MER37;
KW   Repetitive sequence; Tigger1.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   108-229
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment..";
RL   Nature Genet 3, 137-145 (1993).
XX
RN   [2]
RP   1-550
RA   Lutfalla G., McInnis G.M., Uze G.;
RT   "Structure of the human CRFB4 gene: comparison with its IFNAR
RT   neighbour..";
RL   J. Mol. Evol 41, 338-348 (1995).
XX
RN   [3]
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [3] (Consensus)
XX
CC   23 bp terminal inverted repeats, TA target site
CC   ORF1: bases 425 to 1789; ORF2: bases 1811 to 2206.
XX
SQ   Sequence 2418 BP; 753 A; 472 C; 517 G; 668 T; 8 others;
     caggcatacc tcgttttatt gcgcttcgct ttattgcgct tcgcagatac tgcgtttttt        60
     acaaattgaa ggtttgtggc aaccctgcgt tgagcaagtc tgtcggcgcc atttttccaa       120
     cagcatgtgc tcacttcgtg tctctgtgtc acattttggt aattctcgca atatttcaaa       180
     ctttttcatt attattatat ctgttatggt gatctgtgat cagtgatctt tgatgttact       240
     attgtaattg ttttggggtg ccacgaaccg cacccatata agacggcgaa cttaatcgat       300
     aaatgttgtg tgtgttctga ctgctccacc gaccggccgt tcccccgtct ctctccctct       360
     cytcgggcct ccctattccc tgagacacaa caatattgaa attaggccaa ttaataaccc       420
     tacaatggcc tctaagtgtt caagtgaaag gaagagtmrc acatctctca ctttaaatca       480
     aaagctagaa atgattaagc ttagtgagga aggcatgtca aaagccgaga taggccaaaa       540
     gctaggcctc ttgcgccaaa cagttagcca agttgtgaat gcaaaggaaa agttcttgaa       600
     ggaaattaaa agtgctactc cagtgaacac acgaatgata agaaagyaaa acagccttat       660
     tgctgatatg gagaaagttt tagtggtctg gatagaagat caaaccagcc acaayattcc       720
     cttaagccaa agcctaatcc agagcaaggc cctaactctc ttcaattcta tgaaggctga       780
     gagaggtgag gaagctgcag aagaaaagtt tgaagctagc agaggttggt tcatgaggtt       840
     taaggaaaga agccatctcc ataacataaa agtgcaaggt gaagcagcaa gtgctgatgt       900
     agaagctgca gcaagttatc cagaagatct agctaagatc aytgatgaag gtggctacac       960
     taaacaacag attttcartg tagatgaaac agccttctat tggaagaaga tgccatctag      1020
     gactttcata gctagagagg agaagtcaat gcctggcttc aaagcttcaa aggacaggct      1080
     gactctcttg ttaggggcta atgcagctgg tgactttaag ttgaagccaa tgctcattta      1140
     ccattctgaa aatcctagag cccttaagaa ttatgctaaa tctactctgc ctgtgctcta      1200
     taaatggaac aacaaagcct ggatgacagc acatctgttt acagcatggt ttactgaata      1260
     ttttaagccc actgttgaga cctactgctc agaaaaaaag attcctttca aaatattact      1320
     gctcattgac aacgcacctg gtcacccaag agctctgatg gagatgtaca aggagattaa      1380
     tgttgttttc atgcctgcta acacaacatc cattctgcag cccatggatc aaggagtaat      1440
     ttcgactttc aagtcttatt atttaagaaa tacattttat aaggctatag ctgccataga      1500
     tagtgattcc tctgatggat ctgggcaaag taaattgaaa accttctgga aaggattcac      1560
     cattctagat gccattaaga acattcgtga ttcatgggag gaggtcaaaa tatcaacatt      1620
     aacaggagtt tggaagaagt tgattccaac cctcatggat gactttgagg ggttyaagac      1680
     ttcagtggag gaagtaactg cagatgtggt ggaaatagca agagaactag aattagaagt      1740
     ggagcctgaa gatgtgactg aattgctgca atctcatgat aaaacttgaa cggatgagga      1800
     gttgcttctt atggatgagc aaagaaagtg gtttcttgag atggaatcta ctcctggtga      1860
     agatgctgtg aacattgttg aaatgacaac aaaggattta gaatattaca taaacttagt      1920
     tgataaagca gcggcagggt ttgagaggat tgactccaat tttgaaagaa gttctactgt      1980
     gggtaaaatg ctgtcaaaca gcatcacatg ctacagagaa atctttcatg aaaggaagag      2040
     tcaattgatg cggcaaactt cattgttgtc ttattttaag aaattgccac agccacccca      2100
     accttcagca accaccaccc tgatcagtca gcagccatca acatcaaggc aagaccctcc      2160
     accagcaaaa agattacgac tcgctgaagg ctcagatgat cgttagcatt ttttagcaat      2220
     aaagtatttt taaattaagg tatgtacatt gttttttaga cataatgcta ttgcacactt      2280
     aatagactac agtatagcgt aaacataact tttatatgca ctgggaaacc aaaaaattcg      2340
     tgtgactcgc tttattgcga tattcgcttt attgcggtgg tctggaaccg aacccgcaat      2400
     atctccgagg tatgcctg                                                    2418
//
ID   KORV_LTR    repbase; DNA   ; MAM   ; 502 BP.
XX
AC   AF151794;
XX
DT   30-OCT-2001 (Rel. 6.09, Created)
DT   30-OCT-2001 (Rel. 6.09, Last updated, Version 1)
XX
DE   Phascolarctos cinereus retrovirus KoRV long terminal repeat.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; KORV_I; KORV_LTR.
XX
OS   Phascolarctos cinereus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos.
XX
RN   [1]
RA   Hanger J.J., Bromham D.L., McKee J.J., O'Brien M.T.,
RA   Robinson F.W.;
RT   "The nucleotide sequence of koala (Phascolarctos cinereus) retrovirus:
RT   a novel type C endogenous virus related to gibbon ape leukemia
RT   virus.";
RL   J. Virol 74(9), 4264-4272 (2000).
XX
DR   GenBank; AF151794; Positions       3     504.
XX
SQ   Sequence 502 BP; 133 A; 124 C; 126 G; 119 T; 0 others;
     tgaaggaggc agaaatcatg aggcagaaat cattccgtgg agtatggaaa ctacccggag        60
     ggcccaaggt ttagggacag gtgcagccag gcacagtaaa aggtcagagc aagaaaaaca       120
     aggaagattt ggagtgccaa acgggatatc tgtggtcatg cacctgagtc cccaccccgg       180
     acttatgcaa acaattccca gaaatagctg agctcataac agtttctagg gtgcccctca       240
     gcagtttcta gaaccctctc gtgaccggag tttttattca aactaaccaa tgatcttgct       300
     cctcgcttcc gtacccgcgc ttttttgcta taaaatgaga ccaaagaatc cacctggcgc       360
     gccagtccct ctaggtgact gagtcgcccg agtactcgta agttcaataa acctcttgct       420
     atttgcatcc ggagttgtgt tcgcgttgat cctgggaggg tttctcaagg tcggaggact       480
     acccgaacat tggggtcttt ca                                                502
//
ID   SINEC1B2_CF repbase; DNA   ; MAM   ; 164 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Dog SINE element SINEC1B2_CF.
XX
KW   SINE; Interspersed Repeat; SINE element; SINEC1B2_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-164
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1B2_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 89%.
XX
SQ   Sequence 164 BP; 21 A; 54 C; 45 G; 44 T; 0 others;
     gggcagcctg ggtggctcag cggtttagcg cctgcctttg gcccagggcg tgatcctgga        60
     gacccgggat cgagtcccac atcgggctcc ctgcatggag cctgcttctc cctctgcctg       120
     tgtctctgcc tctctctctc tctgtgtctc tcatgaataa ataa                        164
//
ID   MLT1F       repbase; DNA   ; MAM   ; 542 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1F subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT1F;
KW   MaLR family; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
RN   [2]
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1F retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 22%.
XX
SQ   Sequence 542 BP; 134 A; 153 C; 130 G; 124 T; 1 others;
     tgtggtagcc agcctccaag atggccccca atgatccctg cctcctggta ttcacgccct        60
     tgtgtagtcc cctcccacat tgaatagggc tgacctgtgt gaccaataga atatngcgga       120
     aatgatggtg tgtgacttcc gaggctaggt cataaaagac attgcggctt ctgccttgct       180
     ctctttggat cactcgctct gggggaagcc agctgccatg ttatgaggac actcaagcag       240
     ccctgtggag aggtccacgt ggcgaggaac tgaggcctcc tgccaacagc cagcaccaac       300
     ttgccagcca tgtgagtgag ccatcttgga agcggatcct ccagccccag tcaagccttc       360
     agatgactgc agccccggcc gacatcttga ctgcaacctc atgagagacc ctgagccaga       420
     accacccagc taagccgctc ccaaattcct gacccacaga aactgtgaga taataaatgt       480
     ttattgtttt aagccactaa gttttggggt aatttgttac gcagcaatag ataactaata       540
     ca                                                                      542
//
ID   L1MC2       repbase; DNA   ; MAM   ; 1091 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MC2) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1M4; L1MC2; L1MC2 subfamily; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1091
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-1091
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 16%.
XX
SQ   Sequence 1091 BP; 414 A; 186 C; 215 G; 271 T; 5 others;
     ctgktatcca aaatatacaa agaactctta aaactcaaca ataagaaaac aaacaaccca        60
     attttaaaat gggcaaaaga tctgaacaga cacctcacca aagaagatat acagatggca       120
     aataagcata tgaaaagatg ctcaacatca tatgtcatta gggaattgca aattaaaaca       180
     acaatgagat atcactacac acctattaga atggctaaaa tccaaaacac cgacaacacc       240
     aaatgctggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggcacagc cactttggaa gacagtttgg cagtttctta caaagctaaa catantctta       360
     ccatacgatc cagcaatcgt gctccttggt atttacccaa atgagttgaa aacttatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aagcaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaagaaat gagctatcaa gccatgaaaa gacatggagg       600
     aaacttaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtatg       660
     attccaacta tatgacattc tggaaaaggc aaaactatgg agacagtaaa aagatcagtg       720
     gttgccaggg gttcaggggg agggagggag ggatgaatag gtggagcaca ggggattttt       780
     agggcagtga aactattctg tatgatactg taatggtgga tacatgwcat tatacatttg       840
     tcaaaaccca tagaatgtac aacacaaaga gtgaacccta atgtaaacta tggactttag       900
     ttaataataa tgtatcaata ttggttcatc aattgtaaca aatgtaccac actaatgcaa       960
     gatgttaata ataggggaaa ctgtgtgngg gnggggtgag ggggtatatg ggaactctct      1020
     gtactttctg ctcaattttt ctgtaaacct aaaactgctc taaaaaataa agtctattaa      1080
     ttttttaaaa a                                                           1091
//
ID   MER53       repbase; DNA   ; MAM   ; 189 BP.
XX
AC   .
XX
DT   27-JAN-1997 (Rel. 2, Created)
DT   15-OCT-1997 (Rel. 2.09, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat; putative non-autonomous DNA
DE   transposon related to Mariner terminal inverted repeats - a consensus.
XX
KW   DNA transposon; Interspersed Repeat; MER53; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-189
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit A.F.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha..";
RL   Genetica 98, 235-247 (1996).
XX
CC   [1] (Consensus)
XX
CC   TA target site duplication; MER53 is an almost perfect palindrome.
CC   Identified in humans and rodents.
XX
SQ   Sequence 189 BP; 68 A; 29 C; 27 G; 65 T; 0 others;
     gggttgccag atttagcaaa taaaatacag gatgcccagt taaatttgaa tttcagataa        60
     acaacaaata attttttagt ataagtatgt cccatgcaat atttgggaca tacttataac       120
     taaaaaatta ttcattgttt atctgaaatt caaatttaac tgggcatcct gtattttatc       180
     tggcaaccc                                                               189
//
ID   MLT1A       repbase; DNA   ; MAM   ; 374 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   25-OCT-2000 (Rel. 5.09, Last updated, Version 5)
XX
DE   Mammalian long terminal repeat (MLT1A subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT1A;
KW   MaLR family; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
CC   [1] (Consensus)
XX
CC   LTR of MLT1A retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 17%. Intermittant subfamily
CC   between MSTD and MLT1C.
CC   The subfamily MLT1A differs from this consensus by two small inserts
CC   and a few substitutions.
XX
SQ   Sequence 374 BP; 96 A; 87 C; 97 G; 93 T; 1 others;
     tgctatggac tgaatgtttg tgtcccccca aaattcatat gttgaagccc taatccccaa        60
     tgtgatggta ttaggaggtg gggcctttgg gaggtgatta ggattagatg aggtcatgag       120
     ggcggggccc tcataatggg attagtgccc ttataaaaga gaccycagag agctcccttg       180
     ccccttccgc catgtgagga cacagtgaga aggcgccgtc tacgaaccag ggaatgagcc       240
     ctcaccagaa actgaatctg ccggcgcctt gatcttggac ttcccagcct ccagaactgt       300
     gagaaataaa tttctgttgt ttaagctacc cagtctatgg tattttgtta tagcagcccg       360
     aacagactaa gaca                                                         374
//
ID   MER4I       repbase; DNA   ; MAM   ; 6387 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   Medium reiteration sequence MER4I, putative retroelement MER4I - a
DE   consensus. It is flanked by MER4 LTRs and is similar to the MER41I,
DE   MER57I and MER65I retroelements.
XX
KW   LTR Retrotransposon; Interspersed Repeat; MER4I; Repetitive sequence;
KW   retroelement.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-6387
RA   Kapitonov V.V., Jurka J.;
RT   "MER4I..";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   LTR8 fragment inserted at position 2496 is marked by *.
XX
SQ   Sequence 6387 BP; 2006 A; 1007 C; 1040 G; 2211 T; 123 others;
     tggtaaccat ggaagggatt ctgagtggag atgcccctga cctttgacaa atctcctatc        60
     ggtgcttggt accagcatga gctaacttta tggcycaagc tcaarwtrtc tttatkgctc       120
     aaaccaatag gacaatttgc tgaggtctgr gagcatctcc ctccagagaa tccctgatct       180
     cccaaaattt ggtcgagatc taargtttat tttgctgtac aactcctctt tttttggagt       240
     tttacttgct tccaacacaa ggaaggcgag tttttcctgc ttccatgatg atggaaggca       300
     ggtaactcct ttmtggagtt tsagctcgct tccaacaggg aagrtgagtt ttttttcctg       360
     cttctaggat ggtagagagc agtcttcagc ctgagaccca ttcctaggta agtaactgaa       420
     ttggggtttg tcttggaaat tctccttctt ggctaaaagt taagattaac aatcttggaa       480
     attctcctta argactaaaa gttaagatta acaaccagct ggtcttaatt tctccttacc       540
     attagagcgc tcagtaatca tataagttgt gcgatcattt gttttgctta actgcttytg       600
     tttttgttgt ttttgtttgt ttctgttttt gttgttgttt cwgtcttttt cctattgggt       660
     ttgaccaact ctatccgact tgatcagtgt ggtgggggga gaaaaacggc cagcaaaagg       720
     aaaaaattga ncttgtttac tttgactact aaatctgaag gagaattcca aattatgggg       780
     aacaaggcct ctgaagtggc taaattccca caaaaaaaaa aaaaaamaaa aaaaaaacaa       840
     ggcyagcttt ttgctagcca ggccaaactg aaagagcaat ggctgtcacc ycacgctgca       900
     gttcwatagc taaggtyctg cntttttttt ttttttcacc gtgacagcct gggtttggtt       960
     cytaaatcaa gccctttctg gtttgatast tggtacttct gaaatagcag cwgtttgtcc      1020
     tagctaaaat atggtaatga gatttkaaag gattttttta aaggagctca atggttaaaa      1080
     gtcagcttaa ttaaaaggct aacatccaag atgtatgtgt gtatgtgtgc gtgtgtatgt      1140
     gtgcatgtgt gcgtgtttgt atttaaaagg ccttcatgtt tttgtttcgt cgtttgtttt      1200
     tctctcctaa gaccttgtct ttttttgagc aaagtttttt tcttctcagt tgactgaatt      1260
     ctgttttctt catttacttt tcttccaccc tgttcctcct tccctttgcc atcttykgya      1320
     ccaagtgaar rgayctagar aaggcttcta atracttgag accccttaaa gaacwcagaa      1380
     aaaggtgcca cwcacccctt tttgaggrta aacttctgtt tttccttatg ggacctcaaa      1440
     agtagtaaah agacagattc ctctcaggtc taaagctctg ctytcttttg yattgcgtta      1500
     cctgattttt tgactaaaat agttattgca acagaggcta ctcttgggtt tttaaggaag      1560
     agtgtagtgt agacacttag aaatgtcttt gtttaaaaak ttaagtrcac tgtaaaagca      1620
     tcatrtggyt tagyctcatr ataattctcc ctttttrgag acccagcatt cagtgtgggc      1680
     tctgcccaga gctcagtgrt ccagttaaaa ataggtagtc tctatytaaa taaaattggt      1740
     ctccttataa aatcctatga tagatttcta taattttatg tttratttgg catcaatytt      1800
     taatcttcct ctagcaccac cagacttttt ctctctgtac tttaagatgt aaattttgct      1860
     atytgatttt tcacctaaga gttgtttcct ttaatatgca aatttagggc tatttagctg      1920
     acaactgcct agggtaatga aacaggttat caagaatttg aaagtctaag ataggaaaaa      1980
     aaggrggtct tataaatcta taagatgtac ttctatcagc atgcctaata cgtctatgta      2040
     tttatgtgtt gtgtacacaa tgtttcacta ctaaaaatat ataaaagagc tctaattaat      2100
     tggcttaaag aaaaataaaa gtgcttaaat caaatacttt atcaggaaaa aagaaaagac      2160
     tagtcaaatg ctttttcaag ttyatgaaat gctttttcaa gtttatgtaa cttaagtaaa      2220
     atctttaata aataagctag ctttaaaatt attggtaaag taatattaga aatgtcttaa      2280
     gaattgccag catacatttt tgtttgcatt atattaatca agcartttca tacttatccc      2340
     tgccaaatac tataaaggtg tcaaaatttg gcataggggt tayaaaacta taaacccagc      2400
     ccaaaacaga atgatctttg cttgtgtaat ttttaataaa taagacattg atattggttt      2460
     aatgaaaaya gctrcatctt gaatttagta agattaccat aacttctaac cttgtggctt      2520
     taggcgrtyt ttaaatgatg actatcgcag ttttcataaa taatctaggt aaacaattaa      2580
     taaaataatt aggtaaatgt aatgggataa atacttgtag acaaacttgt cataatttag      2640
     aatataaagt tatattaaat taaataatag atawttwatt atttgrgtat tttccaataa      2700
     aaatatattg taggaaaaca ttcttkctta aaaaaaagtg tgtccttttt aaaaaaatgg      2760
     tgaataagtt ttgtctaatt caaagcttat ttaaaggtta trtataaaac aaggtaaaag      2820
     gaaccaggaa ataaaaaaaa tgtaaagaaa gttataaaaa taaagaggta ttttttgnar      2880
     gtaaaaaagc tgaaaragaa ataattttat atgagaaaga atcttatatg gtaaatttat      2940
     gagaaagaat cttgtatggt aaatttttgt cctaaaataa aatgactggt ttttaagaaa      3000
     gaggwtgttt aggacaaatc agaaagtcca agcatgttat waatggtctg tgtaagtcat      3060
     aataaggttt gcataaagag aaattaaaaa awtttatatg attaagttgg ctataattaa      3120
     aagraaatta tttataatag tctttctaga gattgakgtt tgatattaaa aatacactaa      3180
     tacactaaaa attkgttaga aaaacaaaat tttcttaaag tattgattta ytcataaaat      3240
     tacaagagat tttaatttta atccaaaaat tcaactttta ttgcatctca ctgttttcaa      3300
     gctttttctc ctctttgaga aggcctgaga taataactct ctccttcaac ttttttgtca      3360
     gctcctgtaa ttttttcctc hggttctaac tgytgttgtg gcctgatgct aaaaatgttt      3420
     tatyttaaag gtctaaaagm aatgttttct tccaatataa cattctgtac tckkcttttc      3480
     ttgatgtgtc tgaattgttc catgaaacca gaaaacttca ctcataaccc tggayacact      3540
     cttccttgtc taattaattc aagtactatt ttcatcagtt tgacttcagg ttatctaaag      3600
     ggcttcccat aaggagaagc aatcacactg cagaaggttt ttcttttsct ttttggtaac      3660
     tggcctaaga aaaagatttt atgttttatc aagataattt ttgtgttatt attattaagt      3720
     ttttgatttg cttaggaaaa ctgagattaa aattttttaa attaaggtta ttacatccat      3780
     gtatctttct gtattgcttt taaagtcctt gtgacattga gttacagggc tttaactcct      3840
     gggtctaaaa aggacaccaa gtcctgctaa atcttaaaca ctgacagcaa ttaaagccyc      3900
     atcttcaggc ccgtagaaga tgccaatcaa aataaactgc attcctgaga cacaggaaat      3960
     taaagctatt caactcctca aggcccaggg actatccaga agaggtgggc acgtgagatt      4020
     gtaagggcca attttgaaag ataaaataag ttcaragttt ctctataaat taatcattaa      4080
     aagtttctct ataaattaat cattrawatc aaaggcacac tgatgcaaga ccagcatatg      4140
     ggcccctgtg tcagattaac aaggttttct tgaagcatta acckactcct taataaaggt      4200
     tgtaaaggtt ataaaaggct tatgraaatt atatcttatg gtcaagatta aaattttata      4260
     gattgtttat aaaattttga aaaacaaatt taattggctt catgctgttt ttattagggc      4320
     ttattgtttg gaaaattaag tctcctctct caaagaatga aggtttttgc cttttttgaa      4380
     atccttgagt tatcactttg gttaaatgaa tgacttattt tacaatgacc tgtgattcta      4440
     ttttgtgata tcaagtgttt taaacctttg atatttgaca aactttccaa aatcaaatta      4500
     taaattatgt ctttctgacc taattaatcc tttaagatat taggttcctt aaagtccaaa      4560
     aatgacataa tttggcttat ttggtacaaa aattatayag gaagcattgt caaatatgaa      4620
     aaatgtttaa ncytctttgg gttrtatttg tataaatatg ttattggtat atgttccaaa      4680
     attatatgaa actcctataa ttctgatatr tcttagtgta tattatcart aataattata      4740
     attattatgt taaattattg tatgccacag argtaaccaa atttcctcgt caattgtgtc      4800
     tttaactatg gctgttctaa gacttttgtc atccacggac aattgtttta ttttgrtcct      4860
     ytttaaaagg tagtttataa tcagctatag ractctaaca agcgctctta aatrcaggtt      4920
     tctgataact ttggagattg tgacatcgga atagaggaaa aactttcagg actcatggar      4980
     arctaatgtg ttcatgagga ttgctaaccc aacatcgagc aagcagaaca ggaattaact      5040
     gcatggactg aaccaataga agabtgaaad aatctttttg actttttgct taaaacgttg      5100
     ctgatccttt gttttgtttt tcagagtcaa gaaaactttt cttttgagct atttacagct      5160
     tttaacaatt gagtatagta tactcctatg aacaaaattt ggagcatatt tgtttctctc      5220
     tacctgattt ctccagaatt tggaaactat ttgtgagtat tcttaactta tggcaataca      5280
     gttatttgca taagtgcaat aagaatctgt tttcatttgt aacaggacac aattggagaa      5340
     actggttatt ttaccaaggc tttgactgga atggtgtact ttcctttaag gaatcaaact      5400
     tgacttatgg agccaataaa agcccttgga aaaactggcc tcataccttg tbtacgcagt      5460
     ccctgtacaa ggtttctgac ctgtggtaag taaagaatgt cactttctga caggcccagg      5520
     agccccargt ttatcttgga acctcaagag gagaggaaat tcacccaatt cataggtatt      5580
     tgawggcgca aatccatggc tgggctcggc tttaaaaaag tcttatctga gattccttct      5640
     atggaaaaaa gttccakcaa agccaattta aaaagagcct atataamaaa tmattattct      5700
     tgctgcactt tatgcaaata atcaggccaa gtataataag astaaaactt attttrhaaa      5760
     caaattggtc ctaccatgat ttgtctttag taaaaatggg aaactggaga gagaaaaatt      5820
     atgtttcaaa aactatagta tacctgttat tagattctag ttgtttttca atttttatta      5880
     ttttctacag tttggactga attctaaatt ttttcctggc tacaagtctc caaaataatg      5940
     ttttcaatac tttttctttt tttccttccw tttttcccat ttttcctaat ttaaaatcac      6000
     traaaactaa agctgtgctt ktcttaaagc cctgcaaact gaarctagac aacttaaact      6060
     tcagaagaaa ataatagcaa cctatttaca tacataagcc actttcatac ctgcctactg      6120
     atgtatngac ttcagagtaa tgtgrcctrt rtcaattttc caggattgtt cttttgtttg      6180
     ttgttgtttt tctcccttcc tcctcctatt ttstcttcat aggacatgag acttcacaac      6240
     ctgctaaaaa tragctttcc taawawctcg ggacctaccc gtctaggaat aaactatcct      6300
     agccacgaga gatcagacga aacctgagac cagagactca ttttcttcta aaatgctttc      6360
     tccaaaagat tttagaaaag aagggaa                                          6387
//
ID   SATIICERV   repbase; DNA   ; MAM   ; 643 BP.
XX
AC   AF170123; AF170125;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Cervidae satellite II genomic sequence - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SATIICERV; Satellite II from Cervidae.
XX
OS   Rangifer tarandus caribou
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Cervidae;
OC   Odocoileinae; Rangifer; Rangifer tarandus.
XX
RN   [1]
RA   Li C.Y., Lee C., Hsu H.T., Li Y.S., Lin C.C.;
RT   "Direct visualization of the genomic distribution and organization of
RT   two cervid centromeric satellite DNA families.";
RL   Unpublished.
XX
RN   [2]
RA   Lee C., Li C.Y., Lin C.C.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (21-JUL-1999)Obstetrics & Gynecology,
RL   Pathology, Brigham & Women's Hospital, Harvard Medical School, 20
RL   Shattuck Street, Thorn 623, Boston, MA 02115, USA.
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "SATIICERV consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 91%.
XX
SQ   Sequence 643 BP; 119 A; 191 C; 229 G; 97 T; 7 others;
     gagctgcctg acagactcgc tcagccgagc tctctgaagg tgcagggggc aggaacagac        60
     gtgtgcatgt agctctgcct tggcctggga gtgtggaccc ccbagctggt ccccaggctc       120
     agggccatgg gcctgagaga ggaccaccca aagcgctttt ctcccgggtt tgagagcaga       180
     gtgcgcggct tgcgggaaaa gccggccaga gtgcttgcaa ahcggccttt ggaggcaggc       240
     ggggaggtct tccagaggga gagggchggt gctgctvgga ggccccacag gccagaggca       300
     caaccvagca aggcccctgc ccttggccag ccttgcccag gccttcctgg cvtccagggg       360
     tactgcccca cgaaggggca ggctgcgggg agtgtgtcca gacatgcccg ggcacctach       420
     caaactcgcc ccccaagggc ctttccctgg gcctaggcct cagttgaggc ctactgggag       480
     ggaaggagct ggcaggggct gtctccacac tgcaacgtcc cagggggcag actggcagag       540
     ggaagagggg agcaacgggg tggatgccca agccctcttt ggcccagctg cctcagggca       600
     gcagggagag caagaggccc actgtgatcc taggtcggct ctg                         643
//
ID   MER113      repbase; DNA   ; MAM   ; 519 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Interspersed repetitive element MER113.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER113.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-519
RA   Jurka J.;
RT   "MER113..";
RL   Direct Submission to Repbase Update (FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   Putative DNA transposon. Present in bovine genome.
CC   ~1000 copies per human genome.
XX
SQ   Sequence 519 BP; 181 A; 96 C; 69 G; 172 T; 1 others;
     tttcccaaac ttcagtcatt ttcataccac cttcatgatt tttgccatat ctatatacca        60
     cctgtactat ttatttactt aatttttctt taaattgact cacttttttt atttaaataa       120
     atttatttta aaaggaaact ttatatcact accataaatg gaaaaccagt atcacttgcc       180
     ataaatagaa ggtaaccata aaaataaatt acaatgaaaa caaaacaatg ttattaaatt       240
     ctagctagat actgttgcct gcctactgca aggctctgag cctgaggcct gctctctctt       300
     tgttaaaaag agagattagc aagtgttaga gaggtgttaa agacatacta agcaccaaac       360
     tgagactttc tccttgatgt aatcagaagg attgaaagag aattgaaaag ggaataactt       420
     tctcactatg tgattcaatg ttatttaatg ccatatccat gtnctaccta aaatcatctt       480
     taaataccac cagtggtaca tatcccacac tttgggaaa                              519
//
ID   ART2B_BT    repbase; DNA   ; MAM   ; 507 BP.
XX
AC   Z25526;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Bos taurus art2 (or Pst) repeat family DNA.
XX
KW   ART2B_BT; Art2 repeat family; BTART2B; Repetitive sequence.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-507
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Evidence for homological recombination with with participation of the
RT   bovine alu-like sequences.";
RL   Unpublished.
XX
RN   [2]
RP   1-507
RA   Plucienniczak A.;
RT   "ART2B_BT.";
RL   Direct Submission to Genbank (12-AUG-1993)PLUCIENNICZAK A., PP TERPOL,
RL   LABORATORY OF GENETIC ENGINEERING, P.O.W. 57, SIERADZ, POLAND, 98-200.
XX
DR   GenBank; Z25526; Positions    1253    1759.
XX
SQ   Sequence 507 BP; 154 A; 92 C; 134 G; 127 T; 0 others;
     ctgcagctac cactctccag ccatgaaatt aaaagatgct tactccttgg aaggaaagtt        60
     atgaccaacc tagatagcat attaaaaagc agagacatta ctttgccaac aaaggtccat       120
     ctagtcaaaa ctgtgttttt ttccagtagt catgtatgga tatgagagtt ggactataaa       180
     gaaagctgag cactgaagaa ttgatgcttt tgagctgtgg tattggagaa ttcgcttgag       240
     agtcccttgg actgcaagga gatccaacag tccgttctaa gaatcagtcc tgggtgttca       300
     ttggaaggac gatgctaaag ctgaaactcc aatactttgg ccacctcttg cgaacagttg       360
     actcattaga aaagactctg atgctgggag agattgggag caggaggaga aggggattac       420
     agaggatgag atgggtggat gacatcaccg actcaatgga catgagtttg agtaaactct       480
     gggagctgct gatggacagg gaggcct                                           507
//
ID   MC1_SS      repbase; DNA   ; MAM   ; 301 BP.
XX
AC   X51557;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   S. scrofa Mc1 satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; MC1_SS; SSMC1; satellite DNA.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-301
RA   Jantsch M.;
RT   "MC1_SS.";
RL   Direct Submission to Genbank (19-1989)Jantsch M., Carnegie Institution
RL   of Washington, Dept. of Embryology, 115 West University Parkway,
RL   Baltimore, Maryland 21210 USA..
XX
RN   [2]
RP   1-301
RA   Lopez R., Kristensen T., Prydz H.;
RT   "Database contamination.";
RL   Nature 355, 211-211 (1992).
XX
DR   GenBank; X51557; Positions       1     301.
XX
SQ   Sequence 301 BP; 77 A; 83 C; 76 G; 65 T; 0 others;
     ctggcaaacc aactccaaac gtgttctcct tcgccggaga aggctgattt ggcaggaaga        60
     agcctgtgtg cactgcccta gcaacgcacc atagccagct agggagggac ccacctaggg       120
     cccagggtac cgagctcgaa ttcgtaatca tggtcatagc tgtttcctgt gctgaaattg       180
     cttatccgct cacacaattc cacacacata cgagccggaa cgataaatgt gaaagcctgg       240
     gtgcctaatg agtgagctaa ctcacattaa ttgcgttcgc gtcacgccgt tcagctggaa       300
     g                                                                       301
//
ID   L1MB3       repbase; DNA   ; MAM   ; 930 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MB3) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1M3; L1MB3; L1MB3 subfamily; MER12; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   672-890
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-930
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [3]
RP   1-930
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [3] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 15%.
XX
SQ   Sequence 930 BP; 360 A; 149 C; 197 G; 222 T; 2 others;
     ttaatatcca aaatatataa ggaactccta caactcaaca acaaaaaaac aaataacctg        60
     attaaaaaat gggcaaagga cttgaataga catttctcca aagaagacat acaaatggcc       120
     aacaggcaca tgaaaagatg ctcaacatca ctaatcatta gggaaatgca aatcaaaacc       180
     acaatgagat accacctcac acccgttagg atggctatta tcaaaaaaac agaaaataac       240
     aagtgttggc gaggatgtgg agaaattgga acccttgtgc actgttggtg ggaatgtaaa       300
     atggtacagc cgctatggaa aacagtatgg cggttcctca aaaaattaaa aatagaatta       360
     ccatatgatc cagcaattcc acttctgggt atatacccaa aakaattgaa agcagggact       420
     cgaacagata tttgtacacc catgttcata gcagcattat tcacaatagc caaaaggtgg       480
     aagcaaccca agtgtccatc gacggatgaa tggataaaca aaatgtggta tatacataca       540
     atggaatatt attcagcctt aaaaaggaag gaaattctga cacatgctac aacatggatg       600
     aaccttgagg acattatgct aagtgaaata agccagtcac aaaaggacaa atactgtatg       660
     attccactta tatgaggtac ctagagtagt caaattcata gagacagaaa gtagaatggt       720
     ggttgccagg ggctgggggg aggggggaat ggggagttak tgtttaatgg gtacagagtt       780
     tcagtttggg aagatgaaaa agttctggag atggatggtg gtgatggttg cacaacaatg       840
     tgaatgtact taatgccact gaactgtaca cttaaaaatg gttaaaatgg taaattttat       900
     gttatgtata ttttaccaca attaaaaaaa                                        930
//
ID   L1MC4       repbase; DNA   ; MAM   ; 2761 BP.
XX
AC   .
XX
DT   18-APR-1997 (Rel. 2.03, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MC4) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1MC4; L1MC4 subfamily; L1MC4a; MER42C; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   2162-2761
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1150-2761
RA   Smit A.F.;
RT   "L1MC4..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [3]
RP   1-2761
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [3] (Consensus)
XX
CC   ORF2 ends at bp 668; average divergence of copies from consensus:
CC   22-23%.
XX
SQ   Sequence 2761 BP; 1026 A; 428 C; 556 G; 692 T; 59 others;
     ctaatatacc taatatacaa aaaactctta aaattgaagg ataaaaagnc aaaaaccnaa        60
     tannaaaatg ggnaaaagac atgaacagac aattcacnaa aaatnataaa atggccctta       120
     agcatataaa aagatgttca ncctcacnta taattagaga aacgcaaatt aaaactacac       180
     cgagatacca tttctcaccc ancagatcgg caaaaattaa aaagtatggc aatatannct       240
     gttggcgagg ctgtggggna acnggnactc tcatacactg ctggtgggag tgcaaattgg       300
     tacaactnct ttggaagana atttggcagt ntctaataaa actacacntg cntttacact       360
     ttgacccatt agtcccactt ctagaaattt accctanaga aatacttcta acagntcaaa       420
     aatacacatg tacagggatg ttcatagcag tnttattnnt aatngtaaaa nattggaaac       480
     aatcnaaatg tccatcagca ggagaatggn tgaataaact atggtncatc cacacaatgg       540
     aatactatnc agctgtaaaa aagaatgagg aagatctctg taataatgtg gagngatttc       600
     ggaacatnnt nttnagttga aaaagcnang cgcaaaagag tatatatant atgctaccct       660
     tcatataaga aagaagggga tatgagaaaa tatacatata tctgctcatt tgtgcaaaaa       720
     gaaacacaga aaagataaan caganactaa tgagattggt tacccacagg gaannggtgg       780
     gaatggggag gaaaggacgg aaggaatggg gggcagtgac acttttctga gtataccttt       840
     ttgtatagtt ctaacttttg naaccatgtt aatgtttcac atactcaaga aatgaataan       900
     taaaatcaac aaggatgggg ganaactcaa aatgaaatac aaacagaaac aaatgaaccw       960
     aactgtattt caaatgaata acataaccac actgaagggg gtnaggaaga aaagaactaa      1020
     cccaagtaac ttttgaacac agtattttga ctatatgccc tcaggctaaa gacaaaaaga      1080
     actntaaaca aatattgaac tctagttagt aggcttattt tccgcagngg catgggttag      1140
     caattctgaa actactttct gtatattcta ggactgagca aataagtaaa tatattgngg      1200
     ataatgggag ccaggtttct cactgtcgga gaagggagtt acaaatatgg aaagggggaa      1260
     gactagaatg aaccctgtgg tgttggattg gaattggagg tatcagtgtg aactcatggt      1320
     ttttaatata natagatata cagacagaca gatatagaaa tagatataga tatatatgtg      1380
     tntgtgtata tgtgtatgta tatacgtaca tatatttcct agctctgtcc actgagaggg      1440
     cctagaagca atgacacccc agtagcaatg agcacaccta gcgcccagat cttggtttct      1500
     aaataccatt ctccactaaa aggaaccagg gctccttgga gaaatggctg attccagggc      1560
     tggggcaggg aaagtacaag atgagcctgg aacatcttgt tgtgccagaa agtaaggaag      1620
     tgctcaaaga atgatgggga catgtcaaaa ggacacagga gccagcttga aggggctccc      1680
     actggccaaa tctgggacaa tttgagcatc aaaataaata atgatagtaa tggattataa      1740
     cccattgaat aaaataagaa tccatgagtc catactgata taaataaata aataaataaa      1800
     tgggggagaa gggaaagctc ttccttacag tagaatgcca actaataaat gtagaaggaa      1860
     tgatggaatt agaaaatcac catttggcaa ccatcatagt aataattgat tcaggcaaga      1920
     atcatcaatg gatgctaaaa ctagtgggtg aaagtttgat gagnaacagg atatttacat      1980
     agtctcaaag tatctcccca caaaatactt attaattaca aaggggaaaa tagtaacttt      2040
     acagtggaga aacctggcag acaccacctt aaccaagtga tcaaagttaa catcaccagt      2100
     aatgggacaa atcgacatca tgtgcctcct gatatgatgc actgagaagg acacaacatc      2160
     acttctgtgg tattcctgcc aaaaatgcat aacctgaatc taatcatgag gaaacatcag      2220
     acaaacccaa attgagggac attctacaaa ataactggcc tgtactcttc aaaaatgtca      2280
     aggtcatgaa agacaaagaa agactgagga actgttccag attaaaggag actaaagaga      2340
     catgacaact aaatgcaacg cgtgatcctg gattggatcc tggaccagan ttttttttgc      2400
     tataaaggac attattggga caactggcga aatttgaata aggtctgtag attagataat      2460
     agtattgtat caatgttaat ttcctgattt tgatnattgt actgtggtta tgtaagagaa      2520
     tgtccttgtt tttaggaaat acacactgaa gtatttaggg gtaanggggc atcatgtctg      2580
     caacttactc tcaaatggtt cagaaaaaaa aatatgtata tgnanacaga gaatgataaa      2640
     gcaaatgtgg caaaatgtta acatttgggg aatctgggtg aagggtatac gggaattctt      2700
     tgtactattc ttgcaacttt tctgtaagtc tgaaattatt tcaaaataaa aagttaaaaa      2760
     a                                                                      2761
//
ID   MER42C      repbase; DNA   ; MAM   ; 1522 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   19-FEB-1997 (Rel. 2.01, Last updated, Version 1)
XX
DE   MER42 repetitive sequence; 3' LINE1.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; LINE1; MER42 family;
KW   MER42C; MER42c subfamily; Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1522
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences.";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1522 BP; 541 A; 229 C; 299 G; 380 T; 73 others;
     atgtayagka ggattgatca aataagtaaa cgtattnaag ataatgggag ccaggtttct        60
     cactgtcgga gaagggagtt acaaatatgg aaagggrgaa grctagaatg aaccctgtgg       120
     tattrgattr gaattggagg tatcagtrtg aactcatgrt ttttaatata yryryryryr       180
     tttttcctag tcctgtccac tgagagggcc tagaagcaac gacaccccag tagcaacgag       240
     cacacctagc acccagatct tggtttctaa ataccattct ccactaaaag gaaccagggc       300
     tccttggaga aatggctgat tctaggacta gggcaggaaa tgtacaagat gagcctggaa       360
     catcttgttr tgccagaaaa taaggaagtg ctcaaaaaac gatrrgggca trtcaaaagg       420
     acacagaagc cagcttgaag gggctcccac tggccaaatc tgggacaatt tgagcatcaa       480
     aataaataat rgtagtaatg gattataact cattgaataa aataaatatc catgagttca       540
     tactaatata aataaatgaa taaaawaaat aaatgagaar ggaaagctct tcttacagtn       600
     gaatgccaan taataaatnt agaargaata ataatagaaa aatcaccatt aggcaaayac       660
     cgcagtaata actgtttyag gcaagatcca tcgatagatg ctmtaattag tgggcgaaar       720
     tttgatgaga aacggratat ttgcatagtc tcaaagtatc tcctcacaag atatttatta       780
     attacaaagg gaaaaayagt gactttacag tagagaaacc tggcagacac caccttaacc       840
     aagtgatcaa rgttancatc accaaaaatg agacaaaytg acatcatgcg cyncctgatr       900
     tgatgcgccg agaagaacaa catsgcttct gtgatattcc tgccaaagat gcataacctg       960
     aatctaatca tragaaaata tcagacaaac ccaaattgag ggacaktcta caaaataact      1020
     ggnctgtact catcaaaart gtcaaggtca taaaagacaa rgaaagactg aggaactttc      1080
     tacntttgac ggaagactag arncatgaca actaaatgca acgcgggatt ctgrantgga      1140
     tcctggrtcg agaaatagtg ggagtttkta yctataaagg acattattgg gacanttgrc      1200
     gaaatttgaa tanggtctgn agattagata atagtattgt atcaatgtta atttcctgat      1260
     tttgataatt gtaytgtggt tatgtaagag aatgtccttg tttttaggaa anacacactg      1320
     aagtatttag gggtaaaagg ncatsatgtc tgcaacttac tctcaaatrg ttcagraaaa      1380
     aaaatnnata tayataarya gagaatgata aagcaaatgc ggyaaaatgt taacaattgg      1440
     tgaatctggg tgaagggtat acgggwgttc tttgtactat tcttgcaact tttctgtaag      1500
     tttgaaatta cttcaaaata aa                                               1522
//
ID   LTR13       repbase; DNA   ; MAM   ; 1007 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   16-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   LTR from a human endogenous retrovirus.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; LTR13;
KW   Long terminal repeat.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1007
RA   Pavelitz T., Rusche L., Matera G.A., Scharf M.J., Weiner M.A.;
RT   "Concerted evolution of the tandem array encoding primate U2 snRNA
RT   occurs in situ, without changing the cytological context of the RNU2
RT   locus..";
RL   EMBO J 14, 169-177 (1995).
XX
RN   [2]
RP   1-1007
RA   Smit A.F.;
RT   "LTR13..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   LTR of class II endogenous retrovirus HERVK13. 6 bp target site dups.
CC   This consensus represents a young subfamily, with copies on average
CC   7% diverged from consensus (<5% divergence excepting the 39 CpG sites)
CC   The tandem duplication at pos 313-368 and 366-422 is absent in some
CC   copies and tripled in others.
XX
SQ   Sequence 1007 BP; 240 A; 273 C; 241 G; 253 T; 0 others;
     tgtgggcggc aagccaccca ggtgccgagg caagagaccg agggcacgag ctgttccagt        60
     ataataaaat atataaaata agaatagtta tactagatat agatcttaga tatgattata       120
     tatgaatatc attaatcatt agtttgtagc aattactctt tattccaata ttataataat       180
     cctcgctcta caatcataac ctaggaaaaa ccaggccata cagagatagg agctgagggg       240
     acatagtgag aagtgaccag aagacaagag tgcgagcctt ctgttatgcc cggacagggc       300
     caccagaggg ctccttggtc tagcggtaac gccagcgtct gggaagacgc ccgttgccaa       360
     gcggaccgtg gtctagcggt agcgtcagtg tcaaggaaaa acacccgcta cttagcagac       420
     cgggaaaggg agtctccctt tccccggggg agtttagaga agactctact cctccacctc       480
     ttgtggaggg cctgacatca gtcaggcccg cccgcagtta tccggaggcc taaccgtctc       540
     cctgtgatgc tgtgcttcag tggtcacgct cctagtccgc cttcatgttc catcctgtac       600
     acctggctct gccttttaga tagcagtagc aaattagtga aagtactaaa agtctctgat       660
     aagcagaaat aatggcgtaa gctgtctctc tctctctcct ctctctctct gcctcggctg       720
     ccaggcaggg aagggccccc tgtccagtgg acacgtgacc cacgtgacct tacctatcat       780
     tggagatggc tcacactcct taccctgccc ctttgtcttg tatccaataa atatcagcgc       840
     agcctggcat tcggggccac taccggtctc cgcgtcttgg tggtagtggt cccccgggcc       900
     cagctgtctt ttcttttatc tctttgtctt gtgtctttat ttctacactc tctcgtctcc       960
     gcacacgggg agaaaaaccc accgaccctg tggggctgga ccctaca                    1007
//
ID   MLT1C       repbase; DNA   ; MAM   ; 467 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1C subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT1C;
KW   MaLR family; STIR; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Rouyer F., de la Chapelle A., Andersson M., Weissenbach J.;
RT   "An interspersed repeated sequence specific for human subtelomeric
RT   regions..";
RL   The EMBO Journal 9(2), 505-514 (1990).
XX
RN   [2]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1C retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 17%. Intermittant subfamily
CC   between MLT1B and MLT1D; 92% similar to MLT1B, except for a 67 bp
CC   deletion in MLT1B (pos 264-330).
XX
SQ   Sequence 467 BP; 139 A; 105 C; 113 G; 108 T; 2 others;
     tgttatgggt tgaattgtgt ccccccaaaa ttcatatgtt gaagtcctaa cccccagtac        60
     ctcagaatgt gaccttattt ggaaataggg tcgttgcaga tgtaattagt taagatgagg       120
     tcatactgga gtagggtggg cccctaatcc aatatgactg gtgtccttat aaaaagggga       180
     aatttggaca cagacacgca cacagggaga acgccatgtg aagatgaagg cagagattgg       240
     ggtgatgcnt ctacaagcca aggaacgcca aagattgcca gcaaaccacc agaagctagg       300
     ggagaggcat ggaacagatt ctccctcaca gccctcagaa ggaaccaacc ctgccgacac       360
     cttgatctcg gacttctagc ctccagaact gtgagacaat aaatttctgt tgtttaagcc       420
     acccagtttg tggtactttg ttacggcagc cctagnaaac taataca                     467
//
ID   BOVB        repbase; DNA   ; MAM   ; 3302 BP.
XX
AC   .
XX
DT   29-OCT-2001 (Rel. 6.09, Created)
DT   29-OCT-2001 (Rel. 6.09, Last updated, Version 1)
XX
DE   Bov-B LINE3-like element - a consensus.
XX
KW   SINE; Interspersed Repeat; Art2_BT; BDDF1; BOVA2; BOVB; BOVTA; BTALUL1;
KW   BTBDDF2; BOV2; L3; LINE; LINE3; MAR1; NLA; Repeat region.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Bovine Alu-like sequences mediate transposition of a new
RT   site-specific retroelement.";
RL   Gene 152, 261-264 (1985).
XX
RN   [2]
RP   1-3302
RA   Jurka J.;
RT   "Bov-B consensus sequence.";
RL   Direct Submission to Repbase Update (29-OCT-2001).
XX
CC   [2] (Consensus)
XX
CC   Over 92% similar to individual repeats.
XX
SQ   Sequence 3302 BP; 1152 A; 628 C; 817 G; 685 T; 20 others;
     caggggcggn gnnngggagg agcaacccca cgtccaagga gcngtggctg cgcaggngca        60
     ggagggccta gaggagctac tccatgttca aggtcaggag ggcggcngtg aggaganacc       120
     cctcgtccaa ggtaaggagc agtggctgcg ctttgctgga gcagccgtga agagataccc       180
     cacgnccaag gtaagagaaa cccaagtaag acggtaggtg ttgcaagagg gcatcagagg       240
     gcagacacac tgaaaccata atcacagaaa actctagcca atctgatcac actaggacca       300
     cagccttgtc taactcaatg aaactaagcc atgccgtgta gggccaccca agacggrtgg       360
     gtcatggtgg agagktctga cagaatgtgg tccactggag aagggaatgg caaaccactt       420
     cagtattctt gccttgagaa ccccatgaac agtatgaaaa ggcaaaatga taggatactg       480
     aaagaggaac tccccaggtc ggtaggtgcc caatatgcta ctggagatca gtggagaaat       540
     aactccagaa agaatgaagg gatggagcca aagcaaaaac aatacccagt tgtggatgtg       600
     actggtgata gaagyaaggt ctgatgctgt aaagagcaat attgcatagg aacctggaat       660
     gttaggtcca tgaatcaagg caaattggaa gtggtcaaac aggagatggc aagagtgaac       720
     gtcgacattc taggaatcag ygaactaaaa tggactggaa tgggtgaatt taactcagat       780
     gaccattata tctactactg tgggcaggaa tcccttagaa gaaatggagt agccatcatg       840
     gtcaacaaaa gagtccgaaa tgcagtactt ggatgcaatc tcaaaaacga cagaatgatc       900
     tctgttcgtt tccaaggcaa accattcaat atcacagtaa tccaagtcta tgccccaacc       960
     agtaatgctg aagaagctga agttgaacgg ttctatgaag acctacaaga ccttttagaa      1020
     ctaacaccca aaaaaagatg tccttttcat tataggggac tggaatgcaa aagtaggaag      1080
     tcaagaaaca cctggagtaa caggcaaatt tggccttgga atacggaatg aagcagggca      1140
     aaggctaata gagttttgcc aagagaatgc actggtcata gcaaacaccc tcttccaaca      1200
     acacaagaga agactctaca catggacatc accagatggt caacaccgaa atcagattga      1260
     ttatattctt tgcagccaaa gatggagaag ctctatacag tcagcaaaaa caagaccagg      1320
     agctgactgt ggctcagatc atgaactcct tattgccaaa ttcagactta aattgaagaa      1380
     agtagggaaa accactagac cattcaggta tgacctaaat caaatccctt atgattatac      1440
     agtggaagtg agaaatagat ttaagggact agatctgata gacagagtgc ctgawgaact      1500
     atggacggag gttcgtgaca ttgtacagga gacagggatc aagaccatcc ccatggaaaa      1560
     gaaatgcaaa aaagcaaaat ggctgtctgg ggaggcctta caaatagctg tgaaaagaag      1620
     agaagcgaaa agcaaaggag aaaaggaaag atataagcat ctgaatgcag agttccaaag      1680
     aatagcaagg agagataaga aagccttcct cagtgatcaa tgcaaagaaa tagaggaaaa      1740
     caacagaatg ggaaagacta gagatctctt caagaaaatt agagatacca agggaacatt      1800
     tcatgcaaag atgggctcaa taaaggacag aaatggtatg gacctaacag aagcagaaga      1860
     tattaagaag aggtggcaag aatacacaga agaactgtac aaaaaagatc ttcatgaccc      1920
     agataatcac gatggtgtga tcactsacct agagccagac atcctggaat gtgaagtcaa      1980
     gtgggcctta gaaagcatca ctacgaacaa agctagtgga ggtgatggaa ttccagttga      2040
     gctatttcaa atcctgaaag atgatgctgt gaaagtgctg cactcaatat gccagcaaat      2100
     ttggaaaact cagcagtggc cacaggactg gaaaaggtca gttttcattc caatcccaaa      2160
     gaaaggcaat gccaaagaat gctcaaacta ccgcacaatt gcactcatct cacacgctag      2220
     taaagtaatg ctcaaaattc tccaagccag gcttcagcaa tatgtgaact gtgaacttcc      2280
     agatgttcaa gctggtttta gaaaaggcag aggaaccaga gatcaaattg ccaacatctg      2340
     ctggatcatg gaaaaagcaa gagagttcca gaaaaacatc tatttctgct ttattgacta      2400
     tgccaaagcc tttgactgtg tggatcacaa yaaactgtgg aaaattctga aagagatggg      2460
     aataccagac cacctgacct gcctcttgag aaatctgtat gcaggtcagg aagcaacagt      2520
     tagaactgga catggaacaa cagactggtt ccaaatagga aaaggagtac gtcaaggctg      2580
     tatattgtca ccctgcttat ttaacttata tgcagagtac atcatgagaa acgctgggct      2640
     ggaagaagca caagctggaa tcaagattgc cgggagaaat atcaataacc tcagatatgc      2700
     agatgacacc acccttatgg cagaaagtga agaggaacta aaaagcctct tgatgaaagt      2760
     gaaagaggag agtgaaaaag ttggcttaaa gctcaacatt cagaaaacga agatcatggc      2820
     atctggtccc atcacttcat gggaaataga tggggaaaca gtggaaacag tgtcagactt      2880
     tatttttttg ggctccaaaa tcactgcaga tggtgactgc agccatgaaa ttaaaagacg      2940
     cttactcctt ggaaggaaag ttatgaccaa cctagatagc atattcaaaa gcagagacat      3000
     tactttgcca acaaaggtcc gtctagtcaa ggctatggtt tttccwgtgg tcatgtatgg      3060
     atgtgagagt tggactgtga agaaggctga gtgccgaaga attgatgctt ttgaactgtg      3120
     gtgttggaga agactcttga gagtcccttg gactgcaagg agatccaacc agtccattct      3180
     aaaggagatc agycctgggt nttcattgga aggactgatg ctgaagctga aactccaata      3240
     ctttggccac ctgatgcgaa gagytgactc attggaaaag actctgatgc tgggaaggat      3300
     tg                                                                     3302
//
ID   MER33       repbase; DNA   ; MAM   ; 324 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER33; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   202-281
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-324
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
SQ   Sequence 324 BP; 111 A; 43 C; 48 G; 117 T; 5 others;
     ctgcgctgtc caatacggta gccactagcc acatgtggct attgagcact tgaaatgtgg        60
     ctagtccaaa ttgagatrtg ctgtaagtrt aaaatataca ccagatttca aagacttagt       120
     acgaaaaaaa gaatgtaaaa tatctcatta ataattttta tattgattac atgttraaat       180
     gataatattt tggatatatt rggttaaata aaatatatta ttaaaattaa tttcacctgt       240
     ttctttttac ttttattaat gtggctacta gaaaatttaa aattacatat gtggctcgca       300
     ttrtatttct attggacaac gctg                                              324
//
ID   CSINE       repbase; DNA   ; MAM   ; 320 BP.
XX
AC   .
XX
DT   26-NOV-2001 (Rel. 6.1, Created)
DT   26-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   SINE element associated with rabbit C sequence - consensus.
XX
KW   SINE; Interspersed Repeat; CSINE; C_OC; Rabbit C.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RA   Hardison C.R., Printz R.;
RT   "Variability within the rabbit C repeats and sequences shared with
RT   other SINES.";
RL   Nucleic Acids Res 13(4), 1073-1088 (1985).
XX
RN   [2]
RA   Ayres A.J., Price K.D., Pasqualone M.D., Cabell H.C., Miller W.,
RA   Hardison C.R.;
RT   "The 5' end of LINE1 repeats in rabbit DNA define subfamilies and
RT   reveal a short sequence conserved between rabbits and humans.";
RL   Genomics 14, 320-331 (1992).
XX
RN   [3]
RP   1-320
RA   Jurka J.;
RL   Direct Submission to Repbase Update (24-NOV-2001).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 320 BP; 53 A; 101 C; 87 G; 74 T; 5 others;
     ggccggcgct gtggcgcagt aggttaagcc tctgcctgca gtgccggcat cccatatggg        60
     cgccggttcr agtcccggct gctccwcttc caatccagct ctctgctrtg gcctgggaaa       120
     gcagtggarg atggcccaag tccttgggcc cctgcaccca catgggagac cwggaagaag       180
     ctcctggctc ctggcttcgg atcggcgcag ctccggccat tgcggccatt tggggagtga       240
     accaacggat ggaagacctt tctctctgtc tcctgtctct ctctctctct ctctgtaact       300
     ctgcctgtca aataaataaa                                                   320
//
ID   SAT1_CF     repbase; DNA   ; MAM   ; 532 BP.
XX
AC   AJ239528; AJ239529;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Canis familiaris satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; SAT1_CF; Repetitive DNA.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RA   Bentolila S., Bach M.J., Kessler L.J., Bordelais I., Cruaud C.,
RA   Weissenbach J., Panthier J.J.;
RT   "Analysis of major repetitive DNA sequences in the dog (Canis
RT   familiaris) genome.";
RL   Mamm. Genome 10(7), 699-705 (1999).
XX
RN   [2]
RA   Weissenbach J.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (22-FEB-1999)Jean Weissenbach, Genoscope
RL   Centre National de Sequencage, 2 rue Gaston Cremieux, 91006 EVRY
RL   Cedex, France.
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "SAT1_CF consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 89%.
XX
SQ   Sequence 532 BP; 82 A; 173 C; 135 G; 137 T; 5 others;
     cctggtgact ctgttccaca cctgagcctc acctggacat gatgactctg gaactctctg        60
     gcctcatcct gacctggtga ctctggtccc atctggahgt cacctggacc aggtgattct       120
     ggtacccctc tggcctcaac cagttctggt gactctggtc ctccactgga cchcacctgg       180
     acctagtgaa tatgctccat ctgggcctca ttggactggt gactctgtcc ctacctgggc       240
     ctcatcggga catggttact gcatbgcttt tggcctcacc tggacctggt aactctggtc       300
     cctacctggg catcacatgg ttcctctgca tggcctgcag attggcctca cvtggacctg       360
     gtgagtgggg ttgcacctgg gcctcaccca tgcctggtga cacaggtccc cacgtgggcc       420
     tcttggacct ggtgaatctg gtccttacct ggtcctcacc cggaactggt aactctggtc       480
     accacctggg actcacctgg acctggttaa tbtggtcccc atctgggcct ca               532
//
ID   BOVA2       repbase; DNA   ; MAM   ; 269 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 2.03, Created)
DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   SINE element; retroposon BOVA2.
XX
KW   SINE; Interspersed Repeat; BOVA2; SINE element; retroposon.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RA   Lenstra A.J., Boxtel A.J., Zwaagstra A.K., Schwerin M.;
RT   "Short interspersed nuclear element (SINE) sequences of the Bovidae.";
RL   Anim Genet 24, 33-39 (1993).
XX
RN   [2]
RA   Okada N., Hamada M.;
RT   "The 3' ends of tRNA-derived SINEs originated from the 3' ends of
RT   LINEs: A new example from the bovine genome.";
RL   J Mol Evol 44 (Suppl 1), S52-S56 (1997).
XX
RN   [3]
RA   Kapitonov V.V.;
RT   "BOVA2.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [3] (Consensus)
XX
CC   Retroposon; (AGC)n tail; 5-15 bp target site duplications.
CC   BOVA2 retroposon is a homodimer of BOVA.
XX
SQ   Sequence 269 BP; 62 A; 70 C; 83 G; 53 T; 1 others;
     ggagaaggca atggcacccc actccagtac tcttgcctgg aaaatcccat ggacggagga        60
     gcctggtagg ctgcagtcca tggggtcgct aagagtcgga caygactgag cgacttcact       120
     ttcacttttc actttcatgc attggagaag gaaatggcaa cccactccag tgttcttgcc       180
     tggagaatcc cagggacggg ggagcctggt gggctgccgt ctatggggtc gcacagagtc       240
     ggacacgact gaagcgactt agcagcagc                                         269
//
ID   BTSAT1      repbase; DNA   ; MAM   ; 43 BP.
XX
AC   V00119;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine satellite DNA fragment.
XX
KW   SAT; Satellite; Simple Repeat; BTSAT1; Repetitive sequence.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-43
RA   Pech M., Streeck E.R., Zachau G.H.;
RT   "Patchwork structure of a bovine satellite DNA.";
RL   Cell 18, 883-893 (1979).
XX
DR   GenBank; V00119; Positions       1      43.
XX
SQ   Sequence 43 BP; 8 A; 13 C; 13 G; 9 T; 0 others;
     caggcccgga tcacgtgact gagcatgcac tgttcacgtg gct                          43
//
ID   OSSAT2      repbase; DNA   ; MAM   ; 816 BP.
XX
AC   K02607;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Sheep 1.714 g/cm3 satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; OSSAT2; Satellite repetitive element.
XX
OS   Ovis sp.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Caprinae; Ovis.
XX
RN   [1]
RP   1-816
RA   Reisner H.A., Bucholtz A.C.;
RT   "Apparent relatedness of the main component of ovine 1.714 satellite
RT   DNA to bovine 1.715 satellite DNA.";
RL   EMBO J 2, 1145-1149 (1983).
XX
DR   GenBank; K02607; Positions       1     816.
XX
SQ   Sequence 816 BP; 152 A; 217 C; 247 G; 200 T; 0 others;
     ccctcatctc gagctacgag gcggaaacgg ggctcctctc gatgtgcgcg ggaccctcgt        60
     gcttcctctc gagtggagac gggtatgtcg gggaacttct tgagttgcag caagggtgtg       120
     aaggagcttt tttaagttcc agaggttagg tgtaattagc ctcgagaagc ctcagtggaa       180
     atgggcctca tttcacctgg agggcaaaac ctcctggatt ttcttgagtt ggggcaggtg       240
     ttctcgactt acgatgggga cctcacggac cccctctggt ggcctcagga ctggccaatc       300
     cccattcgag ttgctcgggg gactctcggg attcctctcg catccatgca gggaccgaag       360
     accttgtgtg gagtcgggcc cggaacctga ggattcctct ccagtgctga cttggacctt       420
     ggggtactta tagagtctcc ccaggggagt cagttctcct ctcgagaggg ggcatgcacg       480
     tgcgctttcc tcccgaactt agcagcaatg tcatgcttcc gttcgcgtca gtcatgggat       540
     ctgtggcttt ccctcgagga tttcccacga ggctttccca cgaggctttc ccacacggct       600
     gttccacgtg ccatcgtggt gggagtcgat cctcggcgtg aaaatcgagg cagtgcaggg       660
     aaaacagttt tctctggaat ggactgagac atctggggga cactgggaat gttggcacga       720
     cgctggagtt cctctctcct ttcctgtgga gagcgcctcc tcttgagatg cgacgggaac       780
     gcctggaatt ctttcccgac caataaggga aaggat                                 816
//
ID   MLT2D       repbase; DNA   ; MAM   ; 388 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JAN-1998 (Rel. 3, Last updated, Version 3)
XX
DE   Interspersed repeat MLT2D - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; MLT2D; MLT2D LTR.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
CC   [1] (Consensus)
XX
CC   This sequence is a human endogenous retroviral LTR.
XX
SQ   Sequence 388 BP; 102 A; 81 C; 82 G; 122 T; 1 others;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acattagtct gggtgtttct gtgaaggtta ttttttggat gagattaaca tttaaatcgg       120
     tagactgagt aaagcagatt accctcccta atgtgggtgg acctcatcta atcagttgaa       180
     ggcctgaatg gaaaaaaagg gctgaccctc ccccaagtaa gaggaaattc tgcctgcctg       240
     atngtcttcg aactggaata tcagctctgc ggattttgga cttgccagcc tccataattg       300
     catgagccaa ttccttataa taaatctatc tactctctct acacacaccc tattggttct       360
     gtttctctgg agaaccctga ctaataca                                          388
//
ID   MAR1        repbase; DNA   ; MAM   ; 250 BP.
XX
AC   .
XX
DT   24-MAR-2000 (Rel. 5.02, Created)
DT   24-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   tRNA-related SINE element from marsupials.
XX
KW   SINE; Interspersed Repeat; MAR1; MIR; MIR3; THER1; THER2; tRNA.
XX
OS   Metatheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing elements with
RT   common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96, 2869-2874 (1999).
XX
RN   [2]
RP   1-250
RA   Jurka J.;
RT   "MAR1.";
RL   Direct Submission to Repbase Update (MAR-2000).
XX
SQ   Sequence 250 BP; 75 A; 60 C; 58 G; 56 T; 1 others;
     gctaggtggt acagtagata gagtgctggg cctggagtca ggaagactca tcttcctgag        60
     ttcaaatctg gcctcagaca cttactagct gtgtgaccct gggcaagtca cttaaccctg       120
     tttgcctcag tttcctcatc tgtaaataat gagctggaga aggaaatggc aaaccactcc       180
     agtatctttg ccaagaaaac cccaaatggg gtcacaaaga gtcagacaca actgaaacga       240
     ctngaacaac                                                              250
//
ID   L1S2_SS     repbase; DNA   ; MAM   ; 537 BP.
XX
AC   X15411;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Pig part of truncated L1 repeat sequence L1Ss.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 repeat; L1S2_SS;
KW   SSL1S2; Repetitive sequence.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-537
RA   Miller R.J.;
RT   "L1S2_SS.";
RL   Direct Submission to Genbank (07-1989)Miller J.R., Institute of Animal
RL   Physiology and Genetics Research, Babraham Hall, Cambridge CB2 4AT, U
RL   K..
XX
RN   [2]
RP   1-537
RA   Baay F.M., Miller R.J.;
RT   "Direct submission.";
RL   Unpublished.
XX
DR   GenBank; X15411; Positions       1     537.
XX
SQ   Sequence 537 BP; 206 A; 119 C; 96 G; 112 T; 4 others;
     aatcaatcaa tggaaaaatg ggcaaaagac ctgaatagac atttctccaa ggaagataca        60
     cagatggcca anaaacacat gaaaaaatgc tcaacatcgc tgattataag agaaatgcaa       120
     atcaaaacta ccatgagata ccacctcaca ccagtcagaa tggccatcat taataaatcc       180
     acaaataaca agtgctggag tggctgtgga gaaaaggaaa ccctcctgca ctgctggtgg       240
     gaatgtaaac tggtacaacc actatggaga cagtttggag ataccttaga aatcatatca       300
     tagatcttcc atatgacccc acaatcccac tcttgggcat ctatccggac aacaaaactc       360
     tacttaaaag agacacatgc acccgcatgt tcattgcagn actattcaca atagccagga       420
     catggaaaca atccaaatgt ccatcgacag atgattggat tcgnnagagg tggtatatat       480
     acacaatgga atactcctca gccataaaaa agaatgacat aatgccattt acagcaa          537
//
ID   FCLTR1      repbase; DNA   ; MAM   ; 57 BP.
XX
AC   M18636;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Cat endogenous xenotropic virus RD-114 partial LTR.
XX
KW   LTR Retrotransposon; Interspersed Repeat; FCLTR1;
KW   Long terminal repeat (LTR); Repetitive element.
XX
OS   Felis catus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Felidae; Felis.
XX
RN   [1]
RP   1-57
RA   Beyer W., Moehring R., Drescher B., Noetze U., Rosenthal S.;
RT   "Molecular cloning of an endogenous cat retroviral element (ECE 1) -a
RT   recombinant between RD-114 and FeLV-related sequences.";
RL   Arch. Virol 96, 297-301 (1987).
XX
DR   GenBank; M18636; Positions       1      57.
XX
SQ   Sequence 57 BP; 11 A; 20 C; 13 G; 13 T; 0 others;
     gctctcccgc tttctaacac tgggagccct ggtgcaccag taaagactct ctgccga           57
//
ID   SINEC1C1_CF repbase; DNA   ; MAM   ; 159 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Dog SINE element SINEC1C1_CF.
XX
KW   SINE; Interspersed Repeat; SINE element; SINEC1C1_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-159
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1C1_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 87%.
XX
SQ   Sequence 159 BP; 19 A; 48 C; 45 G; 47 T; 0 others;
     gggtgcctgg gtggctcagt ggttgagcgt ctgcctttgg ctcaggtcat gatcccgggg        60
     tcctgggatc gagtcccaca tcgggctccc tgcatggagc ctgcttctcc ctctgcctgt       120
     gtctctgcct ctctctctgt gtctctcatg aataaataa                              159
//
ID   B_BT        repbase; DNA   ; MAM   ; 444 BP.
XX
AC   L14855;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Left arm Ba of the major repeat B.
XX
KW   BTB; B_BT; Neurexin I-alpha.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-444
RA   Ushkaryov A.Y., Sudhof C.T.;
RT   "Polymorphism of neurexins.";
RL   Unpublished (1993).
XX
DR   GenBank; L14855; Positions    2871    3314.
XX
SQ   Sequence 444 BP; 115 A; 113 C; 113 G; 103 T; 0 others;
     atatcctttg atttccgtac aacggagcca aatggcctca tcttatttag tcatggcaag        60
     ccacgacacc aaaaagatgc caagcaccca cagatgataa aggtagactt ctttgctatt       120
     gagatgctgg atggccacct ctacctcctc ctagacatgg ggtcaggtac aatcaaaatc       180
     aaagccctgc agaagaaggt gaatgatgga gaatggtatc atgtggactt ccagagagat       240
     ggacgctcag gtaccatttc tgtcaacacg ctgcgcacgc cttacaccgc tcctggcgag       300
     agtcagattc tggacctgga tgatgagctg tacctgggag gcttgccaga aaataaggct       360
     ggcctcgtct tccccaccga ggtgtggact gcgctgctca actacggcta cgtgggctgc       420
     atacgagatc tgttcattga tggc                                              444
//
ID   LINE1E_OC   repbase; DNA   ; MAM   ; 916 BP.
XX
AC   M93325;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   LINE1 repetitive sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   LINE1 (L10c6) repetitive sequence; LINE1E_OC; OCLINE1E;
KW   SINE repetitive sequence.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RP   1-916
RA   Price K.D., Ayres A.J., Pasqualone M.D., Cabell H.C., Miller W.,
RA   Hardison C.R.;
RT   "The 5' end of LINE1 repeats in rabbit DNA define subfamilies and
RT   reveal a short sequence conserved between rabbits and humans.";
RL   Genomics 14, 320-331 (1992).
XX
DR   GenBank; M93325; Positions    1348    2263.
XX
SQ   Sequence 916 BP; 381 A; 153 C; 226 G; 156 T; 0 others;
     cacttggagt cctccaagat ggcagaatag ggggaaggag gaggaggggg agggggaggg        60
     ggagggggag gaggaaggag gaaggaggaa gaggaggagg aggaaggagg gaaggaggga       120
     gggagggagg atttaccacg ccaaacctgg gtgtgtcacc tttggcacac ccttaaccct       180
     gaagaactga acagagatct ggccataccc atcacaagcc tctaaagatc caccaaaagc       240
     agacagccca attaatctag agtcatagta taagaagaaa agccaccaca gcgaggaaaa       300
     aaagaagaaa ccaaagaata tctccacaac accaagcaac aaatgcagaa accgaggaaa       360
     caagaacaag gaagacatca tgacactccc aaatgaacat gacactccaa ttcaagatta       420
     tgaagatgat gagatagaag aaatgcaaga tcaggatttc aaaagattta tgataagaac       480
     atttagaagt tctcaacaac aaattcttaa actacagaaa tccttactgg acaggataga       540
     aaatctctcg cgtgaaaatg aaatcttaag gaggaatcaa gatgaaatga aggaatctag       600
     tagaactgaa attgtgatat tgaagagaaa tcaaaatgaa atgaagaatt cgaattcaaa       660
     agatcaaagg acaaacgcat tagagaccct taaaaacaga atcagtgaag cagaagagag       720
     aatatcagac ttagaagaca gagaacagaa agtatacagt caaaccaaaa tattgttgga       780
     atctaaggat actattaaaa ccaacattcg gtctaggagt tctgaacgca gagaggagaa       840
     gatagacagt tcaatggagc actacgagaa ctcagttgag agaataacga tctatcgaag       900
     ctatgaccta tacatc                                                       916
//
ID   MLT2B2      repbase; DNA   ; MAM   ; 503 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JAN-1998 (Rel. 3, Last updated, Version 3)
XX
DE   Interspersed repeat MLT2B2 - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT2B2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
CC   [1] (Consensus)
XX
CC   This sequence is a human endogenous retroviral LTR.
XX
SQ   Sequence 503 BP; 111 A; 129 C; 121 G; 134 T; 8 others;
     tgtgatggtt aattttatgt gtcaacttga ctgggctaar gggtgcccag atagctggtt        60
     aaacattatt tctgggtgtg tctgtgaggg tgtttccaga tgagattagc atttgaatca       120
     gcggactgag taaagaagat tgccctcacc aatgtgggcg ggcatcatcc aatccgttga       180
     gggcctgrat agaacaaaaa ggcagaggaa gggtgaattt gctctctctc cttgagctgg       240
     gacatccatc ttctcctgcc cttggacatt agaactccag gttctcgggc cttcggacty       300
     cgggacttgc accagcagcc ccccagattc tcaggccttc ggactcggac tgaryyacgc       360
     caccggcttc cctggttctc cagcttgcag acggcatatc gtgggacttc tcagcctcca       420
     taatcacgtg agccaattcc cctaataaat cycytctatc catcctattg gttctgtctc       480
     tctggagaac cctgactaat aca                                               503
//
ID   ART2A       repbase; DNA   ; MAM   ; 551 BP.
XX
AC   M95097;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   01-JUL-2005 (Rel. 2.02, Last updated, Version 3)
XX
DE   Bos taurus ART2 repetitive sequence.
XX
KW   SINE; Interspersed Repeat; ART2A; art2 repetitive sequence; BTART2A;
KW   Repetitive DNA.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-551
RA   Irwin M.D., White T.R., Wilson C.A.;
RT   "Characterization of the cow stomach lysozyme genes: Repetitive DNA
RT   and concerted evolution.";
RL   J. Mol. Evol (1992)In press.
XX
RN   [2]
RP   1-551
RA   Irwin D.M., White R.T., Wilson A.C.;
RT   "Characterization of the cow stomach lysozyme genes: repetitive DNA
RT   and concerted evolution.";
RL   J Mol Evol 37(4), 355-366 (1993).
XX
DR   GenBank; M95097; Positions    1565    2115.
XX
SQ   Sequence 551 BP; 131 A; 166 C; 95 G; 159 T; 0 others;
     attctgttaa tcttctgtca gtcagtcagt tcagtcgctc agtcgtgtct gactctctgc        60
     aaccccatga accacagcat gccaggcctc cctgtccatc accgactccc agagtttacc       120
     caaacccatg tccattgaat tggtgatgcc atccaaccat ctcatcctct gtcgtcccct       180
     tctcctcctg ccctcaatct ttcccaacat cagggctttt caaatgagtc agctcttcgc       240
     atgaggtggc caaagtactg gagtttcagc tttagcatca ttccttccaa agaaatccca       300
     gggctgatct cctttagaat ggactggttg gatctccttg cagtccaagg gactctcaag       360
     agctcttctc caacaccaca gttcaaagca tcaattcttc agtgctcagc cttcttcaca       420
     gtccaactct cacatccata catgaccaca ggaaaaacca tatccttgac tagacggacc       480
     tttgttggca aagtaatgtc tctgcttttg aatatgctat ctaggttggt cataactttt       540
     cttccaagga g                                                            551
//
ID   MER20       repbase; DNA   ; MAM   ; 218 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER20; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-218
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
SQ   Sequence 218 BP; 55 A; 51 C; 64 G; 47 T; 1 others;
     cagtggttct caaccggggg tgattttgcc ccccagggga catttggcaa tgtctggaga        60
     catttttggt tgtcacaact gggggggggg ratgctactg gcatctagtg ggtagaggcc       120
     agggatgctg ctaaacatcc tacaatgcac aggacagccc ccacaacaaa gaattatccg       180
     gcccaaaatg tcgatagtgc caaggttgag aaaccctg                               218
//
ID   MARNA       repbase; DNA   ; MAM   ; 586 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Human non-autonomous mariner-like element.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MARNA.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   66-521
RA   Jurka J.;
RT   "MARNA..";
RL   Direct Submission to Repbase Update (MAY-1999).
XX
RN   [2]
RP   1-586
RA   Smit A.F.;
RT   "MARNA..";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   Retains a partial protein similarity to mariner transposase.
CC   Present in at least 500 heterogenous copies.
CC   Currently 190 bp terminal inverted repeats, but the ends are
CC   still uncertain as copies have variably truncated termini.
CC   Closest thing to a mammalian fold-back element yet.
XX
SQ   Sequence 586 BP; 174 A; 128 C; 111 G; 165 T; 8 others;
     tgggcacgta tacgaggtgt gactataaag taatgaggct gatttttaaa caaacacacc        60
     agaacttata cgtccaaatg agtgttgtcc ttcaaagtag tcaccctggg aggctgtaca       120
     ctcgttccaa cgatgctgcc antgctcaaa acatttctgg aactnctctt ttggaattgc       180
     cttcagagcc agtttatgag ccacataaga aaatcagtct cattacttta tagtcacacc       240
     tcatttttga ccnaaaatag tattacccag cttgatcacc caccttattc accagacttg       300
     gctctgaatg acttttggct gtttccaaaa atcaaatcca ccctcaaagg atgaagattt       360
     gccaccattg aggatattca aaagaatgtg ccgcaggctc tgaaggcaat tccaaagaga       420
     agttccagaa atgttttgag caatggcaac atcgttggaa taagtgtatn gcctcccaag       480
     gtgactactt tgaaggggac aacactcatt tggatgtata agttctggta tgtttgttwa       540
     aaaatcagtc ncattacttt atagtcacac ctcgtntacg ngccca                      586
//
ID   MLT1I       repbase; DNA   ; MAM   ; 409 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Mammalian long terminal repeat (MLT1I subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
KW   Long terminal repeat of retrovirus-like MaLR element; MLT1I.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   98-409
RA   Jurka J.;
RT   "MLT1I..";
RL   Direct Submission to Repbase Update (1998).
XX
RN   [2]
RP   1-409
RA   Smit A.F.;
RT   "MLT1I..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1I retrovirus-like MaLR element. 5 bp target site dups.
CC   75-80% similarity over pos 1-210, 280-409 to MLT1H and MLT1J(1,2).
CC   Average divergence from consensus 26%.
XX
SQ   Sequence 409 BP; 87 A; 97 C; 109 G; 111 T; 5 others;
     tgtggtagtc attagtgctg ttcaccaaat atttctagct ctctnccttc cgggcacatg        60
     gtaggattgt acttcctggc ccccttgaag ttaggtgtgg ccatgtgact tgctttggcc       120
     aatgaaatgt gagcagaagt gacgtgtgtc acttccgggc agaagcttta agagccagtg       180
     tgtgattcnc cangttctct ttccctctgc cacggngacc agcaatgttc cagatggngg       240
     ctgctccgtc agcctgggtc ccggagtgag gatgacatgg agcagagccc cagccgaccc       300
     gcgatggaca tgtagcatga gcaagaaata aacctttgtt gttttaagcc actgagattt       360
     gggggttgtt tgttactgca gcataaccta gcctatcctg actgataca                   409
//
ID   MER2        repbase; DNA   ; MAM   ; 344 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   28-JUN-2000 (Rel. 5.05, Last updated, Version 3)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat;
KW   Interspersed repetitive sequence; MER2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Sheflin L., Celeste A., Woodworth-Gutai M.;
RT   "Recombination in Simian Virus 40-infected cells: Structure of
RT   naturally arising variants ev-2114, ev-2102, and ev-1110..";
RL   J. Biol. Chem 258, 14315-14321 (1983).
XX
RN   [2]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome..";
RL   Nucleic Acids Res 18(1), 137-141 (1990).
XX
RN   [3]
RP   1-344
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [4]
RP   1-344
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [4] (Consensus)
XX
CC   24 bp terminal inverted repeats, TA target site.
CC   Orientation inverted from [3] after similarities to Tigger2.
XX
SQ   Sequence 344 BP; 98 A; 77 C; 71 G; 98 T; 0 others;
     cagtcgtccc tcggtatccg tgggggattg gttccaggac cccccgcgga taccaaaatc        60
     cacggatgct caagtccctg atataaaatg gcgtagtatt tgcatataac ctacgcacat       120
     cctcccgtat actttaaatc atctctagat tacttataat acctaataca atgtaaatgc       180
     tatgtaaata gttgttatac tgtattgttt agggaataat gacaaggaaa aaagtctgta       240
     catgttcagt acagacgcaa ccatccattt tttttctgaa tattttcgat ccgcggttgg       300
     ttgaatccac ggatgcggaa cccacggata cggagggccg actg                        344
//
ID   BOV2        repbase; DNA   ; MAM   ; 560 BP.
XX
AC   X64125;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   B.taurus DNA for SINE sequence Bov-2.
XX
KW   SINE; Interspersed Repeat; BOV2; BTBOV2; Short interspersed repeat.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-560
RA   Lenstra A.J.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (10-JAN-1992). J.A. Lenstra,
RL   Inst. of Infectious Diseases and Immun., School of Veterinary
RL   Medicine, University of Utrecht, Yalelaan 1, 3584 Utrecht, THE
RL   NETHERLANDS.
XX
RN   [2]
RP   1-560
RA   Lenstra A.J., van Boxtel A.J., Zwaagstra A.K., Schwerin M.;
RT   "Short interspersed nuclear element (SINE) sequences of the Bovidae.";
RL   Anim. Genet 24(1), 33-39 (1993).
XX
DR   GenBank; X64125; Positions       1     560.
XX
SQ   Sequence 560 BP; 169 A; 99 C; 164 G; 128 T; 0 others;
     ctgcagccat gaaattaaaa gacgcttact ccttggaagg aaagttatga ccaacctaga        60
     tagcatatta aaaagcagag acattacttt gccaacaaag gtccatctag tcaaggctat       120
     ggtttttcca gtagtcatgt atggatgtga gagttggact ataaagaaag ctgagcgctg       180
     aagaattgat gcttttgaac tgtggtgttg gagaagactc ttgagagtcc cttggactgc       240
     aaggagatcc aaccagtcaa tcctaaagga gatcagtcct gggtattcat tggaaggact       300
     gatgctgaag ctgaaactcc agtactttgg ccacctgatg tgaagagctg actcattgga       360
     aaagaccctg atgctgggaa agattgaggg caggaggaga aggggacgac agaggatgag       420
     atggttggat ggcatcaccg actcaatgga catgagtttg agtaaactcc aggagttggt       480
     gatggacagg gaggcctggc gtgctgcagt ccatggggtc gaaagagtcg gacatgactg       540
     agcgactgaa ctgaactgaa                                                   560
//
ID   SSRS1       repbase; DNA   ; MAM   ; 3832 BP.
XX
AC   X12696;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Pig DNA for male-specific repeat 1.
XX
KW   Male-specific DNA; SSRS1; Repetitive sequence.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-3832
RA   McGraw A.R.;
RT   "SSRS1.";
RL   Direct Submission to Genbank (24-AUG-1988)McGraw R.A., University of
RL   Georgia, Riverbend Research Labs, Athens, Georgia, 30602..
XX
RN   [2]
RP   1-3832
RA   McGraw A.R., Jacobson J.R., Akamatsu M.;
RT   "A male specific repeated DNA sequence in the domestic pig.";
RL   Nucleic Acids Res 16, 10389-10389 (1988).
XX
DR   GenBank; X12696; Positions       1    3832.
XX
SQ   Sequence 3832 BP; 986 A; 832 C; 1032 G; 982 T; 0 others;
     gaattctcat taggtccctt atgtgtaggt ggtggaaaag atgttgatct cggagtcaaa        60
     tgtgtgatca tgtagaacgc agtggcaatg ggatggttat ctgtcagtgt gaagggctga       120
     gaatggtaag gtatgggtgc acggtgtaag gtgaaatatc tccatacaag aagcggagtt       180
     acttcctgcg caaagaattt gtagttgata ggagtttgga agactgatgg agaatctcgg       240
     ttaaagaatt tgactgctct cctggctgag atttgccaac ctggaccagc acagataacc       300
     ttggctgagg aggattcgag agaatgtgaa ggaggaagaa gccgagagag agagagagat       360
     gaaatttgga tacaagccac attccagggc acagtttcat tcccaagccc ttgtctgtgt       420
     ttccggggac tattagacac gaaggctgta tcaggactct tgcatgagat tttcactcgt       480
     tcttggcctt tctctagaag tacgtcgatt gccagcagtc cgtgcttggc acccatgtct       540
     tctcaaagta cacgaggtgt gggtcagtta aatgacaccc tatattttcc ctaagcggca       600
     aagacactgc ctattgaaat ggcagctcat agggtgtcct tcctcagtcg ttccttgatt       660
     tcattgtcca ggggccttta gtttgggtgt ttggaatgat atcttttctc tccaaaagag       720
     attctatact gtgtattcgt gtgaagcagt gactgagaaa gcacttgacc ctgaagtgct       780
     gcacatgtta tcagatatcc atcatgatag agaaaattgg gctccccagt gtgtggagtt       840
     gccttccttc ggaaaggtgc agtcccagag gtggccatgg ttctgatatc atgcccatgg       900
     agccttgtgc ccaaacaacc tctctgtgag aaaagaggtg tgtgatgggc catatgtggg       960
     aaagtctcac cctcaaacct tgagagttaa aggatggaca ccctgagctc ttgctctgga      1020
     ggtctgtcga agttgatgga aaggaggatc catcagatgg gtggtccttt tggatgaaca      1080
     ctattatcgc catctgtaga ctcatagcca ccactctcat caggctccca agctcaatgt      1140
     ggattctaga ggcttggtgt ttgaacatgt gatatcttca ggggatccgt gggcagaata      1200
     cctcacggga gttcctccat gtgaaaaaag agttgtgctt cagggccatt tgaaacaata      1260
     cctcccgcgg cacaaagaag gaatccatgc ccgaatgctc tccaccaagc gtgaggccct      1320
     ggatgtaacc cctcaaagag actttcccaa tggggcattt tcagctccac acttctgaat      1380
     ccatatttcc atagcctaag ccacagggga gccctccaaa cagaggcctt taaaccaaga      1440
     tgtatccggt ctatttcagg tgccttttcc acaggtggat aagaacaagc cctcccactc      1500
     attgagtgac ttactgggag tgtggtgcct ggggccaggg ccagtgtgtt tgttctatct      1560
     acagtcataa ggaaggaagc tgggacgatg atctgatctt ccaggagcgc tgtgatgatg      1620
     cctgcaatgt gagggtattg aaagttccct cctggaaggg agtgggctct gtccctgaca      1680
     ctcctgaggc tagagaatga ggaggtctaa tccatagaga ctggtttttg ttgacagaca      1740
     tcttgcactc tgggctcttg ttggccagcc cactcgccaa ggatgctcag accattgttt      1800
     ggatgcccag tcattgagac atgaagagtc ctagacatca tattctatat cccctaagaa      1860
     cgagtccaga gatcctcaca tgagcaaatc caccatacct catggaccag gtagggaatg      1920
     ctgcagatca gcactttctt gggagagcac tcatgggaac gttgtttcaa gtgcgttgca      1980
     ctctgcgtcc aatatgggac cctcgagacc gaagtacata tgaagtggtc agcgtgtcca      2040
     taggaaggga tgactatggg aagtatggtt taaggctgac ctagttgggg tgtctccaca      2100
     cagcacagga agtctttcag gaccacggaa tttatatgcg atcagaccta ggatgacagg      2160
     gagaaaaggc tgggggataa cttggacgat tctcttggca aatatatttg atccattatt      2220
     accccaggtc gaattgtagc aggaggatac aggagaaatt gaaggggggc aaaggggaga      2280
     gtgagagagc tagagagaag gagatgaaaa gaaggcgaga gagaggtaaa ggagctgttg      2340
     tttcaagcaa ctgtcaatgg caggataatt tctccaagga cgtgtctttc tttaaggtgg      2400
     ctagcacaca aatgggacaa accagcacac ttgtcccaga gtcttctctc cttcaaggcc      2460
     tgacgcccac attgtgtcta ttacaatccc tgctccatcc tggaagacag gtttgaaagc      2520
     cttgctgtgg tccctctatc ttctccaatg gcatggggtg gaaatcagag taagagatat      2580
     tccatagttt ccttcagggg aaaagcctcc tcccatggaa agagatgctc gtgtgttgtt      2640
     cttcctccat cggccattgt tttcctgttc aggctccgtg gggagtgggt ctttttcaat      2700
     gccatatttt ctttcctaat gaggttgtag actgtgtatt cctgggaagc agttttggaa      2760
     ccaccgtgtt gagcctgaca cacgttcagg ggaagaggca tccttctgta gagagcaggt      2820
     gggcacagag gaggtggagt tgccttccat ctagaagttc aggcccaatg gttgccatgg      2880
     caagggcatg ttgcgcacca agtattgtga cacaacacac cgtatgtgag aagagaggcg      2940
     agggatgggc ccaaagtggg aagctctcac cgtcaccccc aattggttgt acctcgggca      3000
     gcctgatctc atgatctgga ggtatgttga tactaaatga aacgaggatc cattggatgt      3060
     attggacaat tggatgataa gtagtatttc cagcattctt ctcatggcca ccattctcat      3120
     caggctgctg aggaaatagg cactgctcag gcttgctttt ggatgatgat ccatttgaaa      3180
     gggaccagtg agcctatccc ttccagtctt ttccaacagg gaaaaaaaga ctcctaagta      3240
     tgaccgggat gagaaatctc attccagatc tcaaagcctg aaaattggcc actcagcctt      3300
     ccaaaaaaga cgaggccctc aacatcaacc cttacgaaat actggaatgg gggcaaggac      3360
     cattccttgc ttcggaacgt acacgtccat agatgaaatc acaaactagc tctccacagt      3420
     aacaaatttc ccaagaatga agctgggata tgtctggtgg gtatttcaca ggttgataag      3480
     aataagtcct gtctaaaggg gtgctggatg gaagtggggt gactagttcc actgctggct      3540
     gtttgtgggg tacacagttg tcaggaattt aaggagtctc tcttgttatc ttccgtgagc      3600
     cctgtggtga gggctcccct tgggcaggac ttgaggtttc gctcttggac gagaggggcc      3660
     tctggcctgc caatggaggg tctagagaag gaggaggatt gtcccaaatg gagactggtt      3720
     tgaggggacc gaatcctgga actctgtccc attgtcattc agaccctgct gaagggtgct      3780
     cagacccctt cttagatgcc aaatcactga gacatggaga ggcagagaat tc              3832
//
ID   MLT2C2      repbase; DNA   ; MAM   ; 450 BP.
XX
AC   .
XX
DT   08-FEB-1999 (Rel. 4.01, Created)
DT   08-FEB-1999 (Rel. 4.01, Last updated, Version 1)
XX
DE   Interspersed repeat MLT2C2 - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT2C2.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
CC   [1] (Consensus)
XX
CC   This sequence is an endogenous retroviral LTR.
CC   Identified in humans and rodents.
XX
SQ   Sequence 450 BP; 114 A; 108 C; 94 G; 127 T; 7 others;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acaycagtct agatgttgct gtgaaggtat tttrtagatg tgattaacat ttayagtcag       120
     ttgactttaa gtaaaggaga ttaccctcca taatgtgggt gggcctcatc caatcagttg       180
     aaggccttaa gagcaaagac tgaggtttcc cgaggaagaa gaaattctgc ctcaagactg       240
     caacgtggaa atcctgctgn tttwccagcc tccaagcctt cggactcgaa ctgcaacatc       300
     arctcttscc tgggtctcca gcctgccggc ctaccctgca gatttcggac ttgccagcct       360
     ccacaatcgc gtgagccaat tccttaaaat aaatctctct ctacacacac cctattggtt       420
     ctgtttctct ggagaaccct gactaataca                                        450
//
ID   MER25       repbase; DNA   ; MAM   ; 2136 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   19-FEB-1997 (Rel. 2.01, Last updated, Version 1)
XX
DE   Older LINE1 5' end region - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; LINE1; MER25;
KW   Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   577-905
RA   Jagadeeswaran P., Biro A.P., Tuan D., Pan J., Forget G.B.,
RA   Weissman M.S.;
RT   "Interspersed repetitive DNA sequences of the human genome: are they
RT   transposons?.";
RL   Prog. Clin. Biol. Res 103, 29-35 (1982).
XX
RN   [2]
RA   Rogan K.P., Pan J., Weissman M.S.;
RT   "L1 repeat elements in the human epsilon-G-gamma globin gene
RT   intergenic region: sequence analysis and concerted evolution: a new
RT   sequence family.";
RL   Mol. Biol. Evol 4, 327-342 (1987).
XX
RN   [3]
RP   593-1047
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats.";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [4]
RP   1-2136
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats.";
RL   Ph.D. dissertation, Univ Southern California, 1995.
XX
CC   [4] (Consensus)
XX
SQ   Sequence 2136 BP; 690 A; 518 C; 475 G; 365 T; 88 others;
     acaaantagg gaaaaatggc ggataggagg caggactaaa ttgcagctcc cactcggatg        60
     gacagagcag catgtggaga ctcacatcgt gaacttttgc tccaagaacc accgcaggaa       120
     tataycaaga aagccgagag aatycacaga ccctctgaag gaagcagatt gctcctgcar       180
     gayccaggaa acggcccaaa aactgtgagt gcccaaagtg tgagaagggr aaaatctgcc       240
     cccgaacaca catcctyact ggggaacctg aagatccaga tcacaggaga aggatttgac       300
     cttacctgga gctgagacaa tttagagggc cgagcaaaat acaggggtag aggaagcagc       360
     gggaaaagcc ccgtgggcac tcccagtcyy yagnnaarcc cagggaagcc atttctgact       420
     tatctcacag gggtcccttg ggagggcagc cggaggaact gggaaagggs cacagggaaa       480
     agaaaacctc cagctgaact ttgtaataat tccgaccgak agagaaattt cctggccaga       540
     actmagggca gggcgrcgka agtgctggtg ggagaccaga agtgctgttg ggggggacac       600
     ggtrggagtg agacytgcct tttgagctgc atgggagctg ggtgaggcct gtnactgcca       660
     gctttccccc acttycctgg tgacctgcat gacacagaag aggcagccat aatccccctg       720
     ggaacgtaac tccattrgcc tgggaactac acccccatcc ctcacagtag ccgcagcaag       780
     ccccgcccaa ggagactctg agctcagaca tgcctaaccc tgcccccacc tgatggtctt       840
     tctctaccca ccctggtagc cgaagacaaa agacataawc tcttgggagc tctayggccc       900
     cacccatcgc ctgagaaacw gaaataytta ycywggcmam cttagggcaa gcttrtatcc       960
     wccctatact rtcgcagctg atgccctctt gaaagcgcca cctcttggct ggaggccaac      1020
     caactcaaga cattacagca aytcayraca gaataaccct gcccctarrr aaggagaaaa      1080
     cgacagctat caccactgcc tgcaacatcc tggctaacca gaggtcctga gtctgtccac      1140
     gtgayaastt cactrctaky ataaccagca ttcgagaaar ccagcacact aagtctatct      1200
     acaaccaagg aatctcacag agtctayttc actcccctgc cacctccatc agagctggtg      1260
     ctggtattca ccgctgrgag acttgaagac aggtcacatc acwggatycy ttgcagacat      1320
     tccccagyac cagcccggag tctggtagct ccactgggtg gctagaycca gaagagcaat      1380
     aacgatcact gyagtccggc tctcaggaag tcccattcct aggrgaaggg ggagagcacc      1440
     acatcaaggg aacaccctgt gggacaaaag aatctgaacg gcagsccttg agtcccagat      1500
     cttycctctg acatagccta cccaaatgag aaggaaccag aaaaayaatt ctggtaatat      1560
     gacaaaacaa ggttctttaa cacccccaaa aratcacact agctcaccag caatggatcc      1620
     aaaccaagaa gaaatcyctg aattgccaga aaaagaattc agaaggtcga ttattaagct      1680
     actcaaggag gcaccgagga aggtgaanac caacttaaag aaanttanaa tataatacag      1740
     gatatgaatg raraaatcty cagwgaaana gatagcataa akaaaaaaca atcamaactt      1800
     cwggaaatcg aagyacactt atagaaatgc gaaatgcwct ggaaagtctc arcaatagaa      1860
     tngaacaagc agaagaaaga acttcagagc tcgaagacaa ggytttcaaa ttaacccaat      1920
     ccgacaaaga caaagaaaaa agaataagaa aatatgaaca aagcctccaa gaagtctggg      1980
     attatgttaa acgaccaaac ctaagaataa tcggcgttcc tgagnaagaa gagaaatcta      2040
     aaagtttgga aaacttattc gnggaaataa tcgaggaaaa cttccccgrc sttgctarag      2100
     ayctagayat ccaamtacaa agaagctcwa wraaca                                2136
//
ID   CHARLIE1A   repbase; DNA   ; MAM   ; 1450 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; Charlie1a;
KW   DNA transposon fossil; MER1_type family; MER64.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-1450
RA   Smit A.F.;
RT   "CHARLIE1A..";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [1] (Consensus)
XX
CC   An internal deletion product of Charlie1 which is much more common
CC   than the full-length element.
XX
SQ   Sequence 1450 BP; 471 A; 261 C; 270 G; 440 T; 8 others;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactgt       120
     gttgacattt gcactgatgg tgcaaaagca atggtgggta aaactgctgg cgccttagca       180
     cggatcaagg cagtggcacc aaactgtact agtagtcatt gtattcttca ccgccacgcg       240
     ctcgcagtna aaaaaatgcc agtttcactt aagaatgtcc ttgatgaagc agtaaaaatk       300
     attaatttta ttaaatctcg acccttgagy acacgtcttt ttaatattct gtgtgacaaa       360
     atgggaagta cgcataaagc acttctgctg cataccgaag tacgatggyt gtctcgagga       420
     aaagcacttg tgcgattgtt tgagttgcga gctgaactag ctactttttt catggaacac       480
     catttttact tgaaagaacg actgacagac aaactrtggt tattcagact tgggtatttg       540
     gcagacattt tctcaaaaat gaacgaagtg agcctgtcac ttcaaggaaa acaactgacg       600
     gtatttgttg ccaatgataa aattcgagct ttcaagcgaa aattagaatt ttggaaaact       660
     tgtatctgcc accgtgagct tgacagcttc ccaatactta aagacttttc tgatgagatc       720
     ggtggtgata ttaacgaatg tgattttttg atattgtata atgaaatgtg tcaacatttg       780
     gaagatctgc ataactcagt gaaccartat tttccaaatg accaatgcat gatgttacaa       840
     aatcatgcat gggtaaaaga tccattcaaa gcgcaagata gaccaatgga ttttaatgta       900
     acagagtacg aaaagttcat tgatacggtt tcagattcca caccgcaact aacctttaag       960
     aaactaccac ttgttgagtt ttggtgtagt atcaaagaag aatatccaca attatctgaa      1020
     aaggctatta aaatactcct ctcttttcca actacatatc tgtgtgaggc cagattttct      1080
     tcatatactt caaccaaaac aacatatcgc aacagattga atgcagaagc agatatgaga      1140
     atccagctgt cttctattaa gccagacatt aaagagattt gcaaaaatgt aaaacaatgc      1200
     cactcttctc actaaatttt tttgttttgg aaaatacggt tatttttcat aaaaatgtta      1260
     tttatgttaa catgtaatgg gtttattatt ttwaaatgaa twaataaata ttttaaaaat      1320
     ttctcagttt taatttctaa tacggtaaat atcaatagat ataacccaca taaacaaaag      1380
     ctctttgggg tcctcaataa tttttaagag tataaagggg tcctgagacc aaaaagtttg      1440
     agaaccgctg                                                             1450
//
ID   BOVTA       repbase; DNA   ; MAM   ; 210 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 2.03, Created)
DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   SINE element; retroposon BOVTA.
XX
KW   SINE; Interspersed Repeat; BOVA; BOVA2; BOVTA; SINE element;
KW   retroposon; tRNA.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RA   Lenstra A.J., Boxtel A.J., Zwaagstra A.K., Schwerin M.;
RT   "Short interspersed nuclear element (SINE) sequences of the Bovidae.";
RL   Anim Genet 24, 33-39 (1993).
XX
RN   [2]
RA   Okada N., Hamada M.;
RT   "The 3' ends of tRNA-derived SINEs originated from the 3' ends of
RT   LINEs: A new example from the bovine genome.";
RL   J Mol Evol 44 (Suppl 1), S52-S56 (1997).
XX
RN   [3]
RA   Kapitonov V.V.;
RT   "BOVTA.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [3] (Consensus)
XX
CC   Retroposon; (CA)n tail; 5-15 bp target site duplications.
CC   5' end related to tRNA (~80 bp) is followed by the BOVA monomer.
XX
SQ   Sequence 210 BP; 54 A; 53 C; 64 G; 38 T; 1 others;
     gggcttccct ggtggctcag atggtaaaga atctgcctgc aatgcaggag acctgggttc        60
     gatccctggg ttgggaagat cccctggaga aggaaatggc aacccactcc agtattcttg       120
     cctggaaaat cccatggaca gaggagcctg gygggctaca gtccatgggg tcgcaaagag       180
     tcggacacga ctgagcgact aacacacaca                                        210
//
ID   L1P_MA2     repbase; DNA   ; MAM   ; 7678 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   LINE1 subfamily consensus; L1PMA2 subfamily.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 subfamily; L1M1_5;
KW   L1M3_5; L1MA2; L1P_MA2; LINE1; MER14; MER43.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1725-1900
RA   Rubin M.C., Leeflang P.E., Rinehart P.F., Schmid W.C.;
RT   "Paucity of novel short interspersed repetitive element (SINE)
RT   families in human DNA and isolation of a novel MER repeat..";
RL   Genomics 18, 322-328 (1993).
XX
RN   [2]
RP   966-1089
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
RN   [3]
RP   7-2259
RA   Kapitonov V.V., Jurka J.;
RT   "L1P_MA2..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [4]
RP   7-3803
RA   Smit A.F.;
RT   "L1P_MA2..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [5]
RP   7520-7657
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [6]
RP   6635-7678
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [7]
RP   1-7678
RA   Kapitonov V.V., Jurka J.;
RT   "L1P_MA2..";
RL   Direct Submission to Repbase Update (05-1997).
XX
CC   [7] (Consensus)
XX
CC   Complete consensus sequence of L1 subfamily L1PM2; average divergence
CC   of L1P_MA2 sequences from their consensus is about 13%.
CC   L1M3_5 and L1MA2 sequences are the 5'- and 3' ends of the L1PM2
CC   consensus sequence, respectively.
XX
SQ   Sequence 7678 BP; 2974 A; 1448 C; 1512 G; 1601 T; 143 others;
     gaaggcggaa caagatggcc gaatagaagm ctccaccgat catcctccct gcaggaacac        60
     caaattgaac aactatccac acaaaaarst accttcataa gaaccaaaaa tcaggtgagc       120
     gatcacagta cctggtttta acttcatatc actgaaagag gcactgaaga gggtaggaaa       180
     gacagtcttg aattgccgat gccaccactc cyccatkccc gggcagtggc wgwgtggtgt       240
     ggagagagaa tctgtgcgct tgggggaggg agagtgcagk gattgtgaga ctttgcattg       300
     gaactcagtg ctgccctgtc acagtagaaa gcaaaaccag gcagaactca gctggtgccc       360
     acggagggaa catttagacc agccctagcc agaggggaat cgcctatccc agtggtcgga       420
     acctgagttc cggcaagcct tgccaccgcg ggctaaagtg ctctggggyt ctaaataaac       480
     ttgaaaggca gtctaggcca maaggactgc aantcctrgg caagtcctag tgctgwactg       540
     ggctcagagy cagtggactt gggggacaca tgacctaagg agacaccagc tggggcagcy       600
     aagggagtgc ttgcaccacc cctcyctyaa ctccaggcag cacagctcac ggctccgaaa       660
     gagactcctt ccttctgctt gaggagagga gagggragag taaagaggac tttgtcttgc       720
     aacttggata ccagctcagc cacagtagga tagggcacca rkcagagtcm tgaggccccc       780
     wttccaggcc ctggctcccg gacaacattt ctagacacac cctgggccag aagagaaccc       840
     gctgccttga agggaaggac ccagtcctgg caggatkcat cacctgctga ctaaagagcg       900
     cttgggccct gaatgatcar cagcgrtacc caggcartac tcastgtggg ccttgggtga       960
     gactcagaga cttgctggct tcaggtgtga ctcagcacat tcccagctgt ggtggctatg      1020
     gggagagact ccttytgctt gagaaaagsa gagggaaaag taaaggggac tttgtcttgc      1080
     accttaggta ccagctcggc cacagtgggr tagagcacca agtaggctct tggggtcccc      1140
     gattccagga cttggctctt ggatggcatt tctggacctg ccctgggcca gaggagagcc      1200
     cactgtcctg aagagagagt cccaggcctg gcagcattca ccacaagctg actgaagagc      1260
     ccttgggcct tgagwgaaca ttggcggtag ccaggcagta ctctccatgg gcctgggrtg      1320
     gtggtggcca cagggagcga ctcctttgcc tgtggaaagg ggagggaaga gtgggaagga      1380
     ctttgtctcg tggtttgggt gccagctcag ccacggtaga atagagcacc aggtagattt      1440
     ctaaggtttc tgactccagg ccctggctcc cggatgacat ctctggacct gcctgrggcc      1500
     wgggggaact taccaccctg aagggaagga cacaagcctg gctkgctttt scayctgctg      1560
     attgtagagc cctagggcct tgagcgaaca taggcggtag ccaggyagtg gttacagcag      1620
     gccttgggtg agacccagtg ctrtgctggc ttcaggtctg acccagcaca gtcccagtgg      1680
     tggtggccac aggggtgctt gtgtcaccmc tcccagcttc aggcagctca gmacagagag      1740
     agagactcca tttgtttggg ggraagtaag ggaagagaac aagagtctct gcctggtaat      1800
     ccagagaatt cttccggatc ttatccaaga ccaccaaggc agtacctcta tgagtctgca      1860
     agaaccacag tgttaytggg cttggggtgc cccctaawgc agatatggct acatgaccaa      1920
     aarcttagat cayaacaccc aagtccsttc aaatacctgg aaagccttcc caagaagrat      1980
     gggtacaaac aagcccagac tgtgaagact acaataaata cctaactctt caatgcccag      2040
     acactgacga acatccacaa gcatcaagac cttccaggaa aacatgacct caccaaacga      2100
     actaaataag gcaccagtga ccaatcctgg agaaacagag agatatgtga yctttcagac      2160
     agagaattca aaatagctgt tttgaggaaa ctcaaagaaa ttcaagataa cacagagaag      2220
     gaattcagaa ttctatcaga taaatctaac aaagagaytg aaataattaw aaagaatcaa      2280
     gcagaaattc tggagctgaa aaatgcaatt ggcatactga agaatgcatc agagtctytt      2340
     aacagcagaa ttgatcaaac agaaraaaga attagtgagc ttgaagacag gctatttgaa      2400
     aatacacagt cagaggagac aaaagaaaaa agaataaaaa acaatgaagc atgcctacaa      2460
     gatctagaaa atagcctcaa aagggcaaat ctaagagtta ttggccttaa agaggaggta      2520
     gaaagagaga taggggtaga aagyttaktt caarggataa taacagagaa cttcccaaac      2580
     ctasagaaag atatcaatat tcaagtacaa gaaggttata gaacaccaag cagatttaac      2640
     ccaaagaaga ctacctcaag gcatttaata atcaaactcc caaaggtcaa ggataaagaa      2700
     aggatcctaa aagcagcaag agaaaagaaa taacatgcaa tasagctcca atacgtntgg      2760
     cagcagactt ttcagtggaa accttacagg ccaggagaga gtggcatgac atatttaaag      2820
     tgctgaagga aaaaactttt accctagaat agtatatcca gtgaaaatat ccttcaaaca      2880
     tgaaagagaa ataaagactt tcccagacaa acaaaagctg agggatttca tcaacaccag      2940
     acctgtcctg caagaaatgc taaagggagt tcttcaatct gaaagaaaag gacgttaatg      3000
     agcaataaga aatcatctga aggtacaaaa ctcactggta atagtaagta cacagaaaaa      3060
     cacagaatat cgtaacactg taattgtggt atgtaaacta ctcatatctt aartagaaag      3120
     actaaaaaat gaaycaatca aaaataataa ctacaacaat tttcaagaca tagacagtac      3180
     artaagatat aaatagaaac aacaaaaagt taaaaagaga ggggatgaag ttaaagtgta      3240
     gagtttttat tagttttcga ttgtttgctt gtttgtttat gcaawcggtg ttgttatcag      3300
     cttaaaataa tgggttataa gataktattt gcaagcctca tggtaacctc aaatcaaaaa      3360
     acatacaaca gatacacaaa aaataaaaag caagaaatta aatcatacca ccagagaaaa      3420
     tcaccttcac taaaagaaag acaggaagga aggaaagaag gaagagaaga ccacaaaaca      3480
     accagaaaac aaataacaaa atggcaggag taaatcctta cttatcaata ataacattgg      3540
     aatgtaaatg gactaaactc taatcaaaag acatagagtg gctgaatgga taaaaaaaac      3600
     aakacccaat gatctgytgc ctacaagaaa cacacttcac ctataaagac acacatagac      3660
     tgaaaataaa gggatggaaa aagatrttcc atgcaaatag aaaccaaaaa agagcaggag      3720
     tagctatact tatatcagac aaaatagayt tyaagacaaa aactataaga agagacaaag      3780
     aatgtcattt aatgataaag gggtcaattc agcaagagga tataacaatt ttatatatat      3840
     gcacccaaca ctggagcacc cagatatata aagcaaatat tattagagct aagagagaga      3900
     tagaccccaa tacaataata gctggagact tcwmcacctg tcttttagca ttagaaawat      3960
     cwtccagaca gaaaatcaac aaagaaacat tgkacttaat ctgcactata gaccaaatgr      4020
     acctaataga yatttacaga acatttyatc caacagctgc agaatacaca ttcttctcct      4080
     cagcacatgr atcattctca aggatagrcc atatntnagg tcacaaaaca artcttaaaa      4140
     cattcaaaaa attgaaatta tatcaagyat cttctctgac cacaatggaa taaaactaga      4200
     aatcaataac aagagraatt ttggaaacta tacaaacaca cggaaattaa acaayatgct      4260
     yctgaatgac cagtgkgtca atgaagaaat taagaaggaa attkaaaaat ttcttgaaac      4320
     aaatgataat ggaaacacaa tataycaaaa cctatgagat acggtaaaag cagtactaag      4380
     agggaaagtt tatagctgta agtgcctaca tcaaaaaaga agaaaaactt cgaataaaca      4440
     acctaatgat gcatcttaaa gaactagaaa agcaagagca aaccaaaccc aaaattagta      4500
     gaagaaaata aataataaag atcagagcag aaataaatga aattgaaata aagaraacaa      4560
     tacaaaagat maatgaaaca aaaagttggt tttttgaaaa gataaacaaa attgacaaac      4620
     ctttagccag aytaagaaaa aaagagaaga cccaaataaa taaaatcaga gatgaaaaag      4680
     gagacattac aactgatacc acagaaattc aaatgatcat tagaggctac trtgagcaac      4740
     tatataccaa taaatcggaa aacctagaag aaatggataa attcctagac acatacaacc      4800
     tacyaagatt gaaccatgaa gaaatccaaa acctgaacag accaataaca agtaacgaga      4860
     tcgaagccgt aataaaaagt ctcccagcaa agaaaagccc gggacctgat ggcttcactg      4920
     ctgaatttta ccaaacattt aaagaattaa taccaatcct actcaaacta ttctgaaaaa      4980
     agaggaggaa ggaatactty caaactcatt ctatgaggcc agtatyaccc tgataccaaa      5040
     accagacaaa gacacatcar aaaaawaaaa ctacaggcca atattcctga tgaatattga      5100
     tgcaaaaatc ctyaacaaaa tactagcaaa ccaaattcaa caacacatta aaaaratcat      5160
     tcatcatgac caagtgggat ttatcccagg gatgcaagga tggttcaaca tatgcaaatc      5220
     aatcacaatc gatrtgatac atcatatcaa cagaatgaag gacaaaaacc atatgatyat      5280
     ttcaattgat gctgaaaaag catttgataa aattcaacat cccttcatga taaaaaccct      5340
     caaaaactgg gtatagaaga acatayctca cgacacaata aaagccatat acgacagacy      5400
     cacagctagt atcayactga atggggaaaa actgaaagcc tttccyttaw gatctgraac      5460
     atgacaagga tgcccacttt caccactgtt attcaacata gtactggaag tcctagttag      5520
     agcaatcaga caagagaaag aaataaaggg catccaaatt ggaaaggaag aagtcaaatt      5580
     atccttgttt gcagatgata tgatcttata tttggaaaaa cctaaagact ccaccaaaaa      5640
     actattagaa ctgataaaca aattcagtaa agttgcagga tacaaaatta acatacaaaa      5700
     atcagtagca tttctatatg ccaacagtga acaatctgaa aaagaaatca agaaagtaat      5760
     cccatttaca atagctacaa ataaaattaa atacctagga attaatktaa yaaaawaakt      5820
     gaaagatstc tayaatgaaa actataaaac actgatgyaa gaaattgaag aggacacaaa      5880
     aaaatggaaa gatattccat gtttatggat tggaagaatc aatattgtta aaatgyccat      5940
     actacccaaa gcaatctaca gattcaatgc matccctatc aaaatacyaa tgacattttt      6000
     cacagaaata gaaaaaacaa tcctaaaatt tatatggaac cacaaaagac ccagaatagc      6060
     caaagctatc ctaagcaaaa agaacaaaac tggaggaaty acattacctg acttcaaatt      6120
     atactacaga gmtatagtaa ccaaaacggc atggtactgg cataaaaaca gacacataga      6180
     ccaatggaac agaatagaga acccagaaac aaatccatac atytacagcg aactcatttt      6240
     cgacaaaggt gccaagaaca tacactgagg aaaagacart ctcttcaata aatggtgctg      6300
     ggaaaactgg atatccatat gcagaagaat gaaactagac cccatctctc gccatataca      6360
     aaaatcaaat caaaatrgat taaagactta aatmtaagac ctcaaactat gaaactacta      6420
     aaagaaaaca ttggggaaac tctccaggac attggatttg ggcaaagatt tcttgagtaa      6480
     taccccacaa gcacaggcaa ccaaagcaaa aatggacaaa tgggatcaya tcaagttaaa      6540
     aagcttctgc acagcaaagg aaacaatcaa caaagtgaag agacaatyca cagaatggga      6600
     gaaaatattt gcaaactacc catctgacaa gggattaata accagaatat ataaggagct      6660
     caaacaactc tataggaaaa aaatctaata atctgattta aaaatgggca aaagatctga      6720
     atagacattt ctcaaaagaa gacatacaaa tggcaaacag gtatatgaaa aggtgctcaa      6780
     cataaytgat catcagagaa atgcaaatca aaactacaat gagatatyat ctcactccag      6840
     ttaaaatggc ttttatccaa aagacaggca ataacaaatg ctggygagga tgtggagaaa      6900
     agggaaccct cgtacattgt tggtgggaat gtaaattagt acaaccacta tggagaacag      6960
     tttggaggtt cctcaaaaaa ctaaaaatag agctaccata taatccagca atcccactgc      7020
     taggtatata ccccaaagaa aggaaatcag tatattgaag agatatctgc actcccatgt      7080
     ttattgcagc aytgttcaca atagccaaga tttggaagca acctaagtgt ccatcaacag      7140
     atgaatggat aaagaaaatr tggtacatat acacaatgga gtactattca gccataaaaa      7200
     agaatgagat cctgtcattt gcaacaacat ggatggaact ggaggtcatt atgttaagtg      7260
     aaataagcca ggcacagaaa gacaaacatc gcatgttctc acttatttgt gagakctaaa      7320
     aattaaaaca attgaactca tggaaayaga gagtagaagg atggttacca gaggctggga      7380
     agggtagtgg gaggkngkgg gaagtgggga tggttaatgg gtacaaaaat atagttagat      7440
     agaatgaata agayctagta tttgvtagca caacagggtg actacagtca aaaataattt      7500
     attgtayatt twraaataac taaaagagta taattggatt gtttgtaaca caaaggataa      7560
     atgcttgaga tgatggatac cccatttacc ctgacgtgat tattatgcat tgtatgcctg      7620
     tatcaaaata tctcatgtac cccataaata tatacaycta ttatgtaccc ayaaaaat        7678
//
ID   L1MD1       repbase; DNA   ; MAM   ; 971 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 2.01, Created)
DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MD1) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1MD1; L1MD1 subfamily; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-971
RA   Smit A.F.;
RT   "L1MD1..";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 15%.
XX
SQ   Sequence 971 BP; 358 A; 155 C; 187 G; 257 T; 14 others;
     cttgtatcca gaatatataa agaactctca aaactcaaca ataaaaaaac aaacaatcta        60
     attaaaaaat gggcaaaaga catgaagaga catttcacca aagaagatat acaaatggca       120
     aataagcaca tgaaaagatg ttcaacatca ttagctatta gggaaatgca aattaaaacc       180
     acaatgagat atcactacac acctattaga atggctaaaa taaaaaataa tgacaayacc       240
     aaatgctggc gaggatgtgg agaaactgga tcactcatac attgctggtg ggaatgtaaa       300
     atggtacagc cactctggaa aatactttgg cagtttctta taaagctaaa catacamtta       360
     ccatatgact cagcaattay actcctaggt atttatccca gagaaatgaa aacttatgtt       420
     cacacaaaaa cttgtacacg aatgttyata gcagctttat tcataatagc cmaaaactgg       480
     aaacaaccca gatgtccttc aacgggtgaa tggttaaaca aactgtggta tatccatacc       540
     atggaatact actcagccat aaaaaggaat gaactattga tacatgcaac aacctggatg       600
     aatctccaga aaattatgct gagtgaaaaa agccagtctc aaaaggttac atactgtatg       660
     attccattta cataacattc ttgaaatgac aaaattwtag arwtgragar cagattcctg       720
     gttgccaggg gttagggacg ggggtggggg tggagggagg tgggcatsst ggagttccct       780
     gtggtgatgg aaatgttctg tatcttcact gtatcaatgt caatatcctg gttgtgatay       840
     tgtactatag ttttgtaaga tgttaccatt gggggaagct ggatgaaggg tacacgggat       900
     ccctctgtat tatttcttac aattgtntgt gagtgtgtaa ttatttcaaa ataaaaagtt       960
     taatttaaaa a                                                            971
//
ID   MER87       repbase; DNA   ; MAM   ; 541 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Long terminal repeat.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; Long terminal repeat;
KW   MER4-group family; MER87.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-541
RA   Smit A.F.;
RT   "MER87..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   4 bp duplication sites. At several loci flanking an internal repeat
CC   similar to that of MER4 and MER57. Bp 5-176 are similar to bp 31-
CC   182 of LTR8, bp 399-520 are similar to bp 351-463 of LOR1.
XX
SQ   Sequence 541 BP; 140 A; 136 C; 107 G; 148 T; 10 others;
     tgtaacagtg gagggagacc tagcatgact gactccatct tgcctctgac ccccwgsggt        60
     awcatccttt aggctaaaag cttctgctta ktcctgcacg taggccaagc taactatggg       120
     aggaatttag tttatagttc aactttaaaa aagatggtaa cagtcccttt cccaaactaa       180
     cccccgagga gataaggaaa gtatacacac aaataacaat gttatgttaa agatttatag       240
     gaacattgtg acctgaccta ggacaaagaa gttttgmcaa ctcctcggac tcttgctggc       300
     gcccagatgt ctgtggtcat cggtcacctc ctaaccccaa taccccnctt sttccccttc       360
     ccctagcata aaaagaagcc taagattyat gctnatttga gatggttctt taggacgcta       420
     gtctgccatc ttctcggttt gctggctctc cgaataaagt cactttcctt gccacaacac       480
     ctcgtctctt gacttactgg ctgtcgwgcg gtgagcagta ccagctttgg attcagttac       540
     a                                                                       541
//
ID   SSAT_B      repbase; DNA   ; MAM   ; 331 BP.
XX
AC   .
XX
DT   26-NOV-2001 (Rel. 6.1, Created)
DT   26-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Sus scrofa centromeric repeat - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SSAT_A; SSAT_B; satellite DNA.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RA   Janzen A.M., Buoen B.L., Zhao F., Louis F.C.;
RT   "Characterization of a swine chromosome-specific centromeric
RT   higher-order repeat.";
RL   Mamm. Genome 10(6), 579-584 (1999).
XX
RN   [2]
RP   1-331
RA   Jurka J.;
RL   Direct Submission to Repbase Update (24-NOV-2001).
XX
CC   [2] (Consensus)
XX
CC   See commentary under SSAT_A.
XX
SQ   Sequence 331 BP; 64 A; 90 C; 105 G; 65 T; 7 others;
     aggtttgttc cccgagcaca gtttcccttt gcagaatgca gctcctagaa gcgcgttttg        60
     tgccgtttcg gagctaggcc ctaggtgggt ccctccctag ctggctatgg gggggttgct       120
     agggccagtg cacacagggc ttcttcaggc caaatcagcc ttctgcgcga aggagaagac       180
     gtttggagtt ggtttccagc tgcggagacc accagccaag cagcagtgcc cacggagcca       240
     gaggcagccc agaccctcct tggccctatg gggagccnag ggctaggkga gaastaggca       300
     agcgytgckw tcctgagcma agacgcattg g                                      331
//
ID   FASAT       repbase; DNA   ; MAM   ; 483 BP.
XX
AC   X06372;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   F.catus repetitive DNA satellite monomer FA-SAT.
XX
KW   SAT; Satellite; Simple Repeat; FASAT; FCFASAT; Repetitive DNA;
KW   satellite DNA.
XX
OS   Felis catus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Felidae; Felis.
XX
RN   [1]
RP   1-483
RA   Fanning G.T.;
RT   "Origin and Evolution of a Major Feline Satellite DNA.";
RL   J. Mol. Biol 197, 627-634 (1987).
XX
DR   GenBank; X06372; Positions       1     483.
XX
SQ   Sequence 483 BP; 90 A; 179 C; 131 G; 83 T; 0 others;
     tcctgaccgg caccgtccct tgtgccctca actcagccct tcggggagac cactgccctg        60
     ctgtgggttc ggcgcctgga acctcctggg acctaaccct aaccctaacc ctaccccgaa       120
     ccgggaccct cccccgaaac ctaagcctgc ctcgatccct aatcctgcat ttgagccgcc       180
     ttctggcatg ggccctcact tcagccctcg agggagatca cgagaccgga gtcgcttcgg       240
     ccctggcgac gtccctggcc cgaaccctaa ccctagctaa ggctctcccc tcatggggac       300
     ccaattccaa cgtctgacag catcacgcgc ctggggtcca gaagcggtgc aggctgactc       360
     ggcaaggcac ctggaagctc accatgtcgt ttcccaggcc cggctgcagc tcccgagagg       420
     attgcggagg cctcctcgac cgcgggagga acaacatgtg tggccgtggc agccaaagag       480
     gga                                                                     483
//
ID   L1MA5       repbase; DNA   ; MAM   ; 1047 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   07-OCT-1998 (Rel. 3.09, Last updated, Version 3)
XX
DE   3'-end of L1 repeat (subfamily L1MA5) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1M2; L1MA5; L1MA5 subfamily; MER27; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   781-951
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-1047
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [3]
RP   1-1047
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [3] (Consensus)
XX
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 14%.
XX
SQ   Sequence 1047 BP; 418 A; 161 C; 209 G; 258 T; 1 others;
     ttaatatcca gaatatacaa ggaactcaaa caactcaaca gcaaaaaaac aaataatccg        60
     attaaaaaat gggcaaagga tctgaataga catttctcaa aagaagacat acaaatggcc       120
     aacaggtata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcatctcac cccagttaga atggctatta tcaaaaagac aaaaaataac       240
     aaatgctggc gaggatgcgg agaaaaggga actcttatac actgttggtg ggaatgtaaa       300
     ttagtacagc cattatggaa aacagtatgg aggttcctca aaaaactaaa aatagaacta       360
     ccatatgatc cagcaatccc actactgggt atntatccaa aggaaaggaa atcagtatgt       420
     cgaagagata tctgcactcc catgtttatt gcagcactat tcacaatagc caagatatgg       480
     aatcaaccta agtgtccatc aacagatgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgcggc aacatggatg       600
     agcctggagg acattatgtt aagtgaaata agccaggcac agaaagacaa ataccgcatg       660
     ttctcactca tatgtggaag ctaaaaaagt tgatctcata gaagtagaga gtagaatagt       720
     ggttactaga ggctgggaag ggtaggggga gggggggata gggagaggtt ggttaatgga       780
     tacaaaatta cagctagata ggaggaataa gttctagtgt tctatagcac tgtagggtga       840
     ctatagttaa caataattta ttgtatattt tcaaatagct agaagagagg attttgaatg       900
     ttcccaacac aaagaaatga taaatgtttg aggtgatgga tatgctaatt accctgattt       960
     gatcattaca cattgtatac atgtatcgaa atatcacact gtaccccata aatatgtaca      1020
     attattatgt gtcaattaaa aataaaa                                          1047
//
ID   SINEC1_CF   repbase; DNA   ; MAM   ; 144 BP.
XX
AC   .
XX
DT   24-MAY-2004 (Rel. 9.04, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 2)
XX
DE   Dog SINE element SINEC1_CF.
XX
KW   SINE; Interspersed Repeat; SINE element; SINEC1_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-144
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 91%. Supersedes previous
CC   SINEC1_CF.
XX
SQ   Sequence 144 BP; 14 A; 53 C; 41 G; 36 T; 0 others;
     gggcagcccg ggtggctcag cggtttagcg ccgccttcag cccagggcgt gatcctggag        60
     acctgggatc gagtcccaca tcgggctccc tgcatggagc ctgcttctcc ctctgcctgt       120
     gtctctgcct ctctctctct ctct                                              144
//
ID   SINEC1A_CF  repbase; DNA   ; MAM   ; 168 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Dog SINE element SINEC1A_CF.
XX
KW   SINE; Interspersed Repeat; SINE element; SINEC1A_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-168
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1A_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 90%.
XX
SQ   Sequence 168 BP; 20 A; 56 C; 44 G; 48 T; 0 others;
     gggatccctg ggtggctcag cggtttagcg cctgcctttg gcccagggcg tgatcctgga        60
     gtcccgggat cgagtcccac atcgggctcc ctgcatggag cctgcttctc cctctgcctg       120
     tgtctctgcc tctctctctc tctctctgtg tctctcatga ataaataa                    168
//
ID   THER2       repbase; DNA   ; MAM   ; 169 BP.
XX
AC   .
XX
DT   24-MAR-2000 (Rel. 5.02, Created)
DT   24-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   tRNA-related SINE element from therians.
XX
KW   SINE; Interspersed Repeat; MIR; MIR3; Repetitive sequence; THER1;
KW   THER2; tRNA.
XX
OS   Mammalia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi.
XX
RN   [1]
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing elements with
RT   common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96, 2869-2874 (1999).
XX
RN   [2]
RP   1-169
RA   Jurka J.;
RT   "THER2.";
RL   Direct Submission to Repbase Update (MAR-2000).
XX
SQ   Sequence 169 BP; 38 A; 39 C; 35 G; 50 T; 7 others;
     tctagagtca gargacctgg gttcaaatyc crnttctgac acttnatagc tgtgtgacct        60
     tgggcaagtc acttaacgtc acctctctgn gcctcagttt cctcatctgt aaaatgaagg       120
     ggttggatta gatagcctct aaggtccctt tcagctctag akctatgat                   169
//
ID   MER5A       repbase; DNA   ; MAM   ; 189 BP.
XX
AC   .
XX
DT   01-MAY-1996 (Rel. 1.04, Created)
DT   07-OCT-1998 (Rel. 3.09, Last updated, Version 3)
XX
DE   Nonautonomous DNA transposon. Medium reiteration frequency MER5
DE   repetitive sequence - a consensus.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER5; MER5A;
KW   Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   34-185
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome..";
RL   Nucleic Acids Res 18(1), 137-141 (1990).
XX
RN   [2]
RP   1-189
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   14 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
SQ   Sequence 189 BP; 46 A; 51 C; 47 G; 43 T; 2 others;
     cagtggttct caaagtgtgg tccccggacc agcagcatca gcatcacctg ggaacttgtt        60
     agaaatgcag attctcgggc cccaccccag acctactgaa tcagaaactc tgggrgtggg       120
     gcccagcaat ctgtgtttta acaagcyctc caggtgattc tgatgcatgc tcaagtttga       180
     gaaccactg                                                               189
//
ID   MER45       repbase; DNA   ; MAM   ; 178 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   28-JUN-2000 (Rel. 5.05, Last updated, Version 3)
XX
DE   Nonautonomous hAT-like DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER45; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-178
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RP   1-178
RA   Smit A.F.;
RT   "MER45..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Orientation reversed to agree with gene orientation in MER45R [2].
XX
SQ   Sequence 178 BP; 30 A; 52 C; 50 G; 46 T; 0 others;
     cagggccggc ttcatgggcg tgcgacctgt gcagtcgcac agggccccgc gctcagaagg        60
     gccccgcgct tggtttaatg ctctgctgtc gccgtcttga aattcttaat aatttttgaa       120
     caaggggccc cgcattttca ttttgcactg ggccccgcaa attatgtagc cggtcctg         178
//
ID   MER8        repbase; DNA   ; MAM   ; 239 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MER8;
KW   Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-239
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   24 bp terminal inverted repeats, TA target site.
XX
SQ   Sequence 239 BP; 59 A; 63 C; 54 G; 58 T; 5 others;
     cagttgtccc tctgtatann cgggggattg gttccaggac ccytgtgtat acmaaaatcc        60
     gcgcatactc aagtcccgaa gtcggccctg cggaacccac gnatatgaaa agtcggccct       120
     ccatatatac gggtttcgca tcccgcgaat actgtatttt caatccgcgt ttgattgaaa       180
     aaaatccgcg tataagtgga cccacgcagt tcaaacccgt gttgttcaag ggtcaactg        239
//
ID   BTCS        repbase; DNA   ; MAM   ; 298 BP.
XX
AC   X51355;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine consensus sequence.
XX
KW   BTCS; Repetitive element.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-298
RA   Chee M.;
RT   "BTCS.";
RL   Direct Submission to Genbank (05-JAN-1990)Chee M., MRC Laboratory of
RL   Molecular Biology, Hills Road, Cambridge CB2 2QH, U.K..
XX
RN   [2]
RP   1-298
RA   Chee S.M., Rizos H., Henderson R.B., Baker R., Stewart S.T.;
RT   "Subfamilies of serine tRNA genes in the bovine genome.";
RL   Mol. Gen. Genet 231, 106-112 (1991).
XX
DR   GenBank; X51355; Positions    2800    3097.
XX
SQ   Sequence 298 BP; 66 A; 81 C; 76 G; 75 T; 0 others;
     agttaatgag tatgctgctg ctgctaaatc gcttcagtcg tgtctgactt ggtgcgaccc        60
     cactgacggc agcccaccag cctcccctga ctctgggatt ctccaggcaa gaacactgga       120
     gtgggttgcc atttccttct ccaatgcatg aaagtgaaaa gtgaaagtga agactctcag       180
     tcgtgtccga ctctttgcaa ccctatggac tgcagcccac caggctcgtc catccagggg       240
     attttccagg caagagtact ggagtggggt gccattgcct tctccagtta atgagtat         298
//
ID   SINE_UT     repbase; DNA   ; MAM   ; 189 BP.
XX
AC   AB108791; AB108792; AB108795; AB108801; AB108806; AB108809; AB108810;
AC   AB108812; AB108819;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Urotrichus talpoides DNA, SINE like sequence.
XX
KW   SINE; Interspersed Repeat; SINE-like; SINE_UT.
XX
OS   Urotrichus talpoides
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Talpidae; Urotrichus.
XX
RN   [1]
RA   Nakata A., Kuro-o M.;
RT   "Analysis of the phylogenetic relationships in the Japanese
RT   Insectivora based on the DNA sequences of the short interspersed
RT   repeated elements (SINEs).";
RL   Unpublished.
XX
RN   [2]
RA   Nakata A., Kuro-o M.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (18-APR-2003)Akifumi Nakata, Department
RL   of Biofunctional Science, Faculty of Agriculture and Life Science,
RL   Hirosaki University; 3 Bunkyo-cho, Hirosaki, Aomori 036-8156, Japan
RL   (E-mail:nakata@cc.hirosaki-u.ac.jp, Tel:81-172-39-3591).
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "SINE_UT consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 88%.
XX
SQ   Sequence 189 BP; 44 A; 62 C; 30 G; 49 T; 4 others;
     ccagggagma acccacatgg ygsaacagac ctctcctgtc tcgcccgctg ctcccctcag        60
     cagtgtattt catcatctgc ctgttctgct ccccgctctg tctctggtga atcctctcac       120
     ctcccrcacc tctggcctgt accccagtgc ttgtatgcat aaataaataa atctttaaaa       180
     aaaaataaa                                                               189
//
ID   SSAT_A      repbase; DNA   ; MAM   ; 331 BP.
XX
AC   .
XX
DT   26-NOV-2001 (Rel. 6.1, Created)
DT   26-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Sus scrofa centromeric repeat - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SSAT_A; satellite DNA.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RA   Janzen A.M., Buoen B.L., Zhao F., Louis F.C.;
RT   "Characterization of a swine chromosome-specific centromeric
RT   higher-order repeat.";
RL   Mamm. Genome 10(6), 579-584 (1999).
XX
RN   [2]
RP   1-331
RA   Jurka J.;
RL   Direct Submission to Repbase Update (24-NOV-2001).
XX
CC   [2] (Consensus)
XX
CC   This is one of the two closely related subfamilies. Not checked
CC   for completeness.
XX
SQ   Sequence 331 BP; 66 A; 88 C; 104 G; 68 T; 5 others;
     aggttngttc cccgagcaca gtttaggttc gcagaatgca gcttccmgaa gcgagttttg        60
     tgccgtttct gagatcggcc ctaggkgggt ccctcccgag ctggctaagg gtgggttgct       120
     ggggcctgtg caaacaaggc cttttcctgc caaatcagcc ttctccccga aggagaacat       180
     gtttggagtg ggtttcaggc tatggagacc acccgcnaag cagcagggcc cacggagcca       240
     gaggcagccc agaccctcct tggccctatg gggagcatag ggccrggtga gaactaggca       300
     agcgttgctt tcctgagcaa agacgcattg g                                      331
//
ID   BTSAT4      repbase; DNA   ; MAM   ; 1402 BP.
XX
AC   J00035;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine satellite I (1.715 gm/ml).
XX
KW   SAT; Satellite; Simple Repeat; BTSAT4; Repetitive sequence;
KW   Satellite repetitive element.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1402
RA   Gaillard C., Doly J., Cortadas J., Bernardi G.;
RT   "The primary structure of bovine satellite 1.715.";
RL   Nucleic Acids Res 9, 6069-6082 (1981).
XX
DR   GenBank; J00035; Positions       1    1402.
XX
SQ   Sequence 1402 BP; 271 A; 351 C; 484 G; 296 T; 0 others;
     aggctgcctc ttgtgttggc ccaggcaagt ccaatcttcc attcgagttg cgaaggaaag        60
     ctggggattg ctctcgagtg actgcagggc caatagacct catctaggct tgtgtccaga       120
     agccagtgtt cctctccagg ggcgacaggg atctcggggt tgcattccag acgcacccgg       180
     ggagacaggc attcatctcg agtggaagca aagaacgtcc gctctgctct cgaatcgcga       240
     cgggtatctc ttggagctca ctgggtggac tcaagggagt caagcctcct gaggcgtttg       300
     gagagaggtc gcgagattgg tctctaggcc acgcaggaga cgaaggccct catctctcga       360
     tgacggggga atctcggggt tgttctcgag cggcggcccc agtgtgcggt ttctcacgag       420
     gtacgacggc gaggtcagtg agcctctcgt ggggcgccag ggaagtcggg tctccatgcg       480
     agtggcgagg gggagcgcgt cattgctccc gagccatggt aggggaatgt ggcctcgaga       540
     cgtgttgaag aaggtctctc gaggtctttc tcgggttgag gcaggaaacc ctgggttccc       600
     tcgacttgtg caggtgacct cagggggctt ctcatggtgg ctctgagaag ccagggaaac       660
     tggaggtggg aggggcctct cgggactcca ctgggcttgg tgcattggaa gagggcctca       720
     tctccagttg aggcaggaac cgcagggtac ctctgatttc agactccgat cgcagggtcc       780
     ctgcagactg gggacaggag agtcaggcct cgtcttgggt tgaggcatgg aactccgctt       840
     gcctctcgag atgtccccgg ggagagaggc cgcttgtcga gctgtatttg gaacctgggg       900
     ttttttccga acgatgcacg gaaaaactgc cccttcgtgt tgacttcatt cacaggctgg       960
     agttcggaga ggtgtccggg catcgggttc ttatcaagag gggaccggga aatcggggtc      1020
     ctacggaatg tggaaccacc cacgaggcca cgtctggaat gtcttcgtga gaccggcctc      1080
     atcctgaggt gcgaccggaa ggatcgggaa ccccttccag acaaagcagg ggagtcgacc      1140
     ctcctgtcca gatcaggagg ggagaaaggg ctcagaggag ggggtgccgg aaaacctcag      1200
     tgttcctctc gagggagacc gggatttcgg ggaactttgt gggtcgcatc aagggtgcca      1260
     agggcccttt cgacctccaa ttcctaacgt gggacttctc ctgaggcgca gtagcgggaa      1320
     agggcttcat cttgcgatga cgggggagcc acgtggtttt tctcgagtta cggcgggatt      1380
     ctcgagttac gacggggaat tc                                               1402
//
ID   THER1       repbase; DNA   ; MAM   ; 208 BP.
XX
AC   .
XX
DT   24-MAR-2000 (Rel. 5.02, Created)
DT   24-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   tRNA-related SINE element from therians.
XX
KW   SINE; Interspersed Repeat; MIR; Repetitive sequence; THER1; THER2;
KW   tRNA.
XX
OS   Mammalia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi.
XX
RN   [1]
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing elements with
RT   common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96, 2869-2874 (1999).
XX
RN   [2]
RP   1-208
RA   Jurka J.;
RT   "THER1.";
RL   Direct Submission to Repbase Update (MAR-2000).
XX
SQ   Sequence 208 BP; 61 A; 41 C; 46 G; 58 T; 2 others;
     atatggtaca gtggatagag tactggacct ggaatcagga agacctgagt tcaaatccag        60
     cctcagatac ttactagctg tgtgaccttg ggcaagtcac ttaacctctg tctgcctcag       120
     tttcctcatc tgtaaaatgg ggataataat agcacctacc tcccagggtt gttgtgagga       180
     tyaaatgaga taatatttaa agyactta                                          208
//
ID   L1B_OC      repbase; DNA   ; MAM   ; 887 BP.
XX
AC   M94361;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Rabbit LINE repetitive sequence.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1B_OC;
KW   LINE1 (L10c11) repetitive sequence; OCL1B; Repetitive sequence.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RP   1-887
RA   Ayres A.J., Price K.D., Pasqualone M.D., Cabell H.C., Miller W.,
RA   Hardison C.R.;
RT   "The 5' end of LINE1 repeats in rabbit DNA define subfamilies and
RT   reveal a short sequence conserved between rabbits and humans.";
RL   Genomics 14, 320-331 (1992).
XX
DR   GenBank; M94361; Positions     125    1011.
XX
SQ   Sequence 887 BP; 288 A; 181 C; 248 G; 170 T; 0 others;
     gaagcggcaa gatggtggaa taggaaggga gcacactgat agtccgagga gagacagttt        60
     aataaaagta ggagatactg caggttcaag aaagagtagg ggaataaaca gcagaggaaa       120
     cttttcctat tctagtgatt cacagtggac ctgcgtggag agcatgggag cccacagttc       180
     agactcaaca caccagcgct agaacgcaag gtgagccgaa catcaaaagc ccgagacacc       240
     gataggcaaa tggaaagagg agactagagg gaatgaggct tgagacccag tgggaaattt       300
     ccatggctct ggaagagaga gagagagaaa aaaaagtgac gtacgacacg tttctctctc       360
     tctcacctct caagggcgag caagacaaag agcaggattt tggcatcgtc ataagcaggg       420
     tgacctcaga gctgcaccca ccctcagcca agggaaaaaa catgagtctg gaggggaggg       480
     ggtgaaataa caggagatta ggacctagtg aatgtgtggt gctaatgaac tgagactgtg       540
     aaaaaagaga cggtgggtga gagaactcat ggaattcatg tgaatactct ccagagacgc       600
     tacaattcgg taagcttggc aacccagtgg gagactgcag gagaatttga gcccacacac       660
     tgagcagaac tgattccctg tgatggtcct tggggaagag gcttccgatc tctggctcct       720
     cgtgtggtat atcatttgcc tgctaactac ctccaattcc gttcagctgt gcggaattac       780
     ttcccgttaa agaaagaaag aaaaaggaaa gaaagagaga gatttaccat acctaaccta       840
     ggagtgtcac ctttggccca cccttaaccc tgaggaacca aataaag                     887
//
ID   BTSAT5      repbase; DNA   ; MAM   ; 330 BP.
XX
AC   X03161;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine satellite DNA I repeat.
XX
KW   SAT; Satellite; Simple Repeat; BTSAT5; Repetitive sequence;
KW   satellite DNA.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-330
RA   Pages J.M., Roizes P.G.;
RT   "Nature and organization of the sequence variations in the long-range
RT   periodicity calf satellite DNA I.";
RL   J. Mol. Biol 173, 143-157 (1984).
XX
DR   GenBank; X03161; Positions       1     330.
XX
SQ   Sequence 330 BP; 75 A; 116 C; 74 G; 65 T; 0 others;
     cactcgagag caatccccag ctttccttcg caactcgaat ggaagattgc acttccctgg        60
     gccaacacaa gaggcaccct gaattccccg tcgtaactcg agaatcccgc cgcaactcga       120
     gaaaacccac gtggttcccc cgtcatcgca agatgaagcc ctttcctgct agagcgtctc       180
     aggagaagtc ccacgttagg aattggaggt cgaaacggta cttggcaccc ttgatgcgcc       240
     cgacaaagtt ccccggcatc ccggtctccc tcgagaggaa caccgaggtt ttccgccacc       300
     acttcctctg agccccttcg accctcctga                                        330
//
ID   SHREP1      repbase; DNA   ; MAM   ; 300 BP.
XX
AC   L06638;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Sorex haydeni mitochondrion repeat region.
XX
KW   Repeat region; SHREP1.
XX
OS   Sorex haydeni
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Soricidae; Soricinae; Sorex.
XX
RN   [1]
RP   1-300
RA   Stewart T.D., Baker J.A.;
RT   "Patterns of sequence variation in the mitochondrial D-Loop region of
RT   Shrews.";
RL   Unpublished (1992).
XX
DR   GenBank; L06638; Positions       1     300.
XX
SQ   Sequence 300 BP; 118 A; 61 C; 24 G; 97 T; 0 others;
     aaattaaacc acctttattc atagaatcac acaaattgac tcaaactttt agtctaaatt        60
     tcgataactt acacctaact aacaacacaa aaaaaatcta acctcatctc ttacattcca       120
     cttccacagt aacatatata ccacatgcat ataagcatgt acatacgatg tttaatagta       180
     cattatacat acaatgtata tcgtacattc aattatattc gacatgcata taagcatgta       240
     catacaagtt taatagtaca ttatacattc gatgtatatc gtacattcga ttatattcga       300
//
ID   OOREP1      repbase; DNA   ; MAM   ; 1579 BP.
XX
AC   M36451;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   O.orca highly repetitive element DNA.
XX
KW   OOREP1; Repetitive element.
XX
OS   Orcinus orca
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Cetacea; Odontoceti; Delphinidae;
OC   Orcinus.
XX
RN   [1]
RP   1-1579
RA   Widegren B., Arnason U., Akusjaervi G.;
RT   "Characteristics of a conserved 1,579-bp highly repetitive component
RT   in the killer whale, Orcinus orca.";
RL   Mol. Biol. Evol 2, 411-419 (1985).
XX
DR   GenBank; M36451; Positions       1    1579.
XX
SQ   Sequence 1579 BP; 368 A; 358 C; 333 G; 520 T; 0 others;
     atcttatgat gtttcttttt ttgtgtgact tatttcatgt agaatcatcg tacctgaatc        60
     cactcattat gctgctacgg gcctgatgac atagatttca ttgctgagtg atattgcatt       120
     gtacgtaagt accacaaagt ctttatccat ttttcgcttt ctgcgatact gaacttgtac       180
     cataaacgag gttcttgtaa acagagccgt cacaaacttt gggatggctg tgtctttttc       240
     attttaattt caactaagct ataggaccat aagtggaagt gccctaggct ctgttgcttt       300
     gttgtttaga tgtttcagga aacaccatac acttctccag agtggctgtt ggcaatttac       360
     atcccgccca tcagcataac aaggctccca attctccatg gcctgtcccg cctttctgga       420
     ttttacactt ttttcagatg gcccttttga ccgtggggca gtgagacttc atgtagtgca       480
     gatttccttt gcaagcttgc ttggttggcc aaaaagttcg tatgcgtttc tttctgaata       540
     tattcaggaa aaaacgcata agaccttttt ggccaagtgc atcattgtgg acgttctgcc       600
     tgttttccta tgctttacat gcaattccag tctacctcct gaaatcggtg tctggcaatt       660
     ttgccccgct ttcaagtcct cttggcagcc ttacttcaat atatttttgg acgatagctg       720
     tcatttataa ctctgcaggt ttgtgaatca cagtgcccct gagctccttt cttcaactgg       780
     ctttcttgtg agctggctgc aacaccgcag gattgcttga ggccctcgtg tggttccggc       840
     agggcacgct gagccttttg ttaattcctc ttcctggtgg gaaatgaggg ttaaatttgc       900
     ccgtccagac acctccagct agtctctcat tgattctccc tattcctgtt cattttccgc       960
     agaaattgca aactgggcca aacaggaggt taaaggcact gactctccaa gtggggagag      1020
     tgttagtaaa gcgtctggaa tcttgcaccc gagtaccagg ggacgaaaac tgagacacat      1080
     ttgaacacgt ttcccgatca cacggtggat catactctgg gttccacatg catgttttag      1140
     ctgaaggaag aatcccttaa acctggagag ttgagaccca tggaatgggt accatgcaat      1200
     atgacttcaa agggtctgta tttgctaact gaaactcact aatcctatca ctgctgcgtt      1260
     tatgccactg tacacacgct tgattccctt tcggagacat ataagtccac aggttttaag      1320
     attcttacta gtcaggtata ttcttaggag tttaatatgg agtgttgagt ccactcgatc      1380
     agcaaggagt agctcttgtc tattaaatat ttggcttatg gaacggtatc tgtgctgatt      1440
     tcaatctctg gttttatgca gcacctcaac tcacctttcc ccttaagcaa gcataagttg      1500
     ctgttctaca tttgagaccc tgttctgttt tgtaattcag ttcctgtgta gccaagttta      1560
     cattccgtgt agtagtgat                                                   1579
//
ID   ALTR2       repbase; DNA   ; MAM   ; 321 BP.
XX
AC   .
XX
DT   09-OCT-1997 (Rel. 2.09, Created)
DT   09-OCT-1997 (Rel. 2.09, Last updated, Version 1)
XX
DE   Retroviral long terminal repeat.
XX
KW   LTR Retrotransposon; Interspersed Repeat; ALTR2; AMER1; LTR;
KW   Long terminal repeat.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-321
RA   Smit A.F.;
RT   "ALTR2.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Putative LTR. AATAAA signal present, possibly 4 bp duplication.x.
XX
SQ   Sequence 321 BP; 90 A; 84 C; 50 G; 92 T; 5 others;
     tggccccaga tagntganat acaatnaang aaatwattcc agtgagccca gactcttgca        60
     tcttcccata catagaaaag cgctaaattc cttaactcga gatatctggt tttctctact       120
     tcacaaaaat acctttgagg ttcaaactac ctgccctttc ttgcaaactg ctatataacg       180
     tggcctctac cccccacctc cttggagcac ttctctcaga gtaatctgag aggctgtctt       240
     cctgggcaac agtcctcagt aaggtaccaa ataaaacata actctcaact ttaggttgtg       300
     acttttttct tcaagtcgac a                                                 321
//
ID   ARMER1      repbase; DNA   ; MAM   ; 316 BP.
XX
AC   .
XX
DT   22-APR-1997 (Rel. 2.03, Created)
DT   22-APR-1997 (Rel. 2.03, Last updated, Version 1)
XX
DE   ARMER1 repetitive element - a consensus.
XX
KW   ARMER1; Repetitive element.
XX
OS   Hippopotamidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla.
XX
RN   [1]
RA   Chopra V., Kapitonov V.V., Jurka J.;
RT   "ARMER1.";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Putative LTR-like sequence.
XX
SQ   Sequence 316 BP; 119 A; 43 C; 65 G; 79 T; 10 others;
     tgggattgac ayatacacac tactatattt aaaatggata accaacaagg acttactgta        60
     tagcacaggg aactctactc artgttctgt gacaacctag aggggtggga tgggggagga       120
     ggtgggaggg aggttcaaga gggaggggat atatgtatac ctatggctga ttcatgttga       180
     tgtatggcag aaaccaacac aatattgtaa agcaattatc cttcaattaa aaataaatta       240
     aaaaattatc ttaaaaaaaa gwatmatbwa aatttwttaa aaaaacagac acacayamac       300
     acacttyttg ttgaca                                                       316
//
ID   MIR         repbase; DNA   ; MAM   ; 262 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Mammalian-wide interspersed repeat (MIR) - a consensus.
XX
KW   SINE; Interspersed Repeat; MB1; MER24; MIR; MIR1; Repetitive DNA.
XX
OS   Mammalia
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi.
XX
RN   [1]
RA   Degen J.S., Davie W.E.;
RT   "Nucleotide sequence for human prothrombin..";
RL   Biochemistry 26, 6165-61677 (1987).
XX
RN   [2]
RA   Donehower A.L., Slagle L.B., Wilde M., Darlington G., Butel S.J.;
RT   "Identification of a conserved sequence in the noncoding regions of
RT   many human genes..";
RL   Nucl. Acids Res 17, 699-710 (1989).
XX
RN   [3]
RA   Jurka J., Zietkiewicz E., Labuda D.;
RT   "Ubiquitous mammalian interspersed repeats (MIRs) are molecular
RT   fossils from the Mesozoic era..";
RL   Nucleic Acids Res 23, 170-175 (1995).
XX
RN   [4]
RA   Smit A.F., Riggs D.A.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation..";
RL   Nucleic Acids Res 23, 98-102 (1995).
XX
CC   [4] (Consensus)
XX
SQ   Sequence 262 BP; 69 A; 52 C; 61 G; 74 T; 6 others;
     acagyayagc atagtggtta agagcacggr ctctggagcc agactgcctg ggttcgaatc        60
     ccggctctgc cacttactag ctgtgtgacc ttgggcaagt tacttaacct ctctgtgcct       120
     cagtttcctc atctgtaaaa tggggataat aatagtacct acctcatagg gttgttgtga       180
     ggattaaatg agttaataya tgtaaagcgc ttagaacagt gcctggcaca tagtaagcgc       240
     tcaataaatg ttrgytatta tt                                                262
//
ID   SINE1_BB    repbase; DNA   ; MAM   ; 237 BP.
XX
AC   AF327249;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Bubalus bubalis clone Bubuasc1 SINE Bov-A2 repeat sequence.
XX
KW   SINE1; SINE; Interspersed Repeat; Putative SINE; SINE1_BB.
XX
OS   Bubalus bubalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bubalus.
XX
RN   [1]
RA   Nijman J.I., van Tessel P., Lenstra A.J.;
RT   "SINE Retrotransposition During the Evolution of the Pecoran
RT   Ruminants.";
RL   J. Mol. Evol 54(1), 9-16 (2002).
XX
RN   [2]
RA   Nijman J.I., van Tessel P., Lenstra A.J.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (29-NOV-2000)Infectious Diseases and
RL   Immunology, Dept. of Bacteriology, Utrecht University, Faculty of
RL   Veterinary Medicine, Yalelaan 1, Utrecht 3584 CL, The Netherlands.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 237 BP; 97 A; 23 C; 39 G; 78 T; 0 others;
     tgagattcag agaaagaatc agaaagaaga agttagaaga aaaaaagcat gatagagtct        60
     agtttttgtg atttaaaaat atcttttata aaaaagataa aacatgtttt tgttgctttt       120
     attttagtat tgtaaaatat tataaagcac ttttctaggt tatctatagt ctgtgacaat       180
     agtctgtgaa accctcaaga aatgacagat acatgctaac ttaaatagca ataatga          237
//
ID   L1MB7       repbase; DNA   ; MAM   ; 922 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 2.01, Created)
DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MB7) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1MB7; L1MB7 subfamily; MER12; Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-920
RA   Smit A.F.;
RT   "L1MB7..";
RL   Direct Submission to Repbase Update (1996).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 17%.
XX
SQ   Sequence 922 BP; 365 A; 149 C; 176 G; 223 T; 9 others;
     cttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tttgaataga catttctcca aagaagatat acaaatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatta gggaaatgca aatcaaaacc       180
     acaatgagat accacttcac acccactagg atggctataa ttaaaaagac agacaataac       240
     aagtrttggc gaggatgtgg agaaattrga accctcatac attgctggtg ggaatgtaaa       300
     atggtgcagc cactttggaa aayagtttgg cagttcctca aaaagttaaa catagaatta       360
     ccatatgacc cagcaattcy actcctaggt atatacccaa gagaawtgaa aacatatgtc       420
     cacacaaaaa cttgtacacg aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aactgatgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagccat aaaaaggaat gaagtactga tacatgctac aacatggatg       600
     aacctcgaaa acattatgct aagtgaaaga agccagacac aaaaggycac atattgtatg       660
     attccattta tatgaaatgt ccagaatagg caaatccata gagacagaaa gtagattagt       720
     ggttgccagg ggctgggggr aaggggaaat ggggagtgac tgctaatggg tacggggttt       780
     ctttttgggg tgatgaaaat gttctaaaat tagatagtgg tgatggttgc acaactytgt       840
     gaatatacta aaaaccactg aattgtacac tttaaaaggg tgaattttat ggtatgtgaa       900
     ttatatctca ataaarctat aa                                                922
//
ID   MER31I      repbase; DNA   ; MAM   ; 4936 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   MER31I repetitive element - a consensus.
XX
KW   Endogenous Retrovirus; Interspersed Repeat;
KW   Internal sequence of retrovirus-like element; MER31I; MER4 group.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-4936
RA   Smit A.F.;
RT   "MER31I..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   MER4-type internal sequence, related to MER4i, MER41i, MER57i, and
CC   MER65i. MER31i is flanked by either MER31 or MER67 LTRs.
XX
SQ   Sequence 4936 BP; 1503 A; 944 C; 832 G; 1608 T; 49 others;
     gttgtggtgc cacaggcctc tgacccagaa cctgaagtat gcacctttga aacctttgtc        60
     ttcactcttg gctgactgat cgggaatcca ttggtaagcc caactcttga gccagtgctc       120
     cagatggcag tctgttgaag catggtgagg atacattttg attcttaagg tccaggcttc       180
     ttttgaaagg tannatacct cctgggctgg aagwttttcc tcctggctct ttgtttcgag       240
     tggggattca ctccctgact cctgggctgg magtcttttt ttggccctct gtgaggcctc       300
     tctgttctct ctatctgatc cttctcctcc cataggaact tctcagtcga ctgaaacccc       360
     tttctcgaac ccctgcwgac tatatgctcc gccaactctg tccacctcct tccttgttgg       420
     cacgattttg ctgaggataa tttggaactt cagtggcctc tttgggaaac ttgagatctc       480
     cccaaactgg ctcctctaag acctctccct tcccattgcc tctgctcctc cttctgccac       540
     cttcgatctt ctcttcagtt tccttgaatc ctttgatatg tcccccttca agcccctacc       600
     tcctccaccc ctctatccac ccctgccaga cctttycctt ctcactccag cccctcaact       660
     ccctatagtc attagagctt taggcctcct gccmcawcag ggggcgckcg aggggctcag       720
     ggacacccaa aagcaaccac ccgaggctga aaaggctarc tggaaacaga ctggatattt       780
     tatccactca gatggacttt ggagacatcc agacgtccgc ttggtgtctc ctcagtccct       840
     cacctaaaat ttagtccaca gcctctatcg gattacacat cagggcaaag aaaatcttaa       900
     aggtctcctc cacaaatatt sgtrgaaagc tttagccctc atgttgagya ggtaacctca       960
     acttgtccca tctgccagaa acacaattca gataaaaata taaagtgggg caaagataat      1020
     gagccaactc tcttatatta accagtgagt tttgtattwc tgtgtttatg cctgattcat      1080
     ggctaaaatt ttagaatkaa agctgtaaga tctctatttg tatctgtctg tatgtttatg      1140
     tatgtatgtt atgtatatgt gatatttttc tacctccaga tggtattacc aaattaattt      1200
     ataaaatccc ttaaggagct ctattcaaan tgacttagag ataaatgaga cttatataaa      1260
     ttaaatattc ctaaaactcc cagaaatata rraactaacc caaatgcttt tcaatttcac      1320
     atgatttggg taaatctttg gcaaataaaa ttagtttaat attgttggtt taattaaaaa      1380
     agggtatgtc ttctgagtta tcagcattaa atataataca agcatacata tttattctac      1440
     ytgggtttag cagtatgtta tctctactaa atatttaaag ttataaaaat tataaattta      1500
     acctaagaat gaatgaagaa gtgcagtatc catcacttca tgcatatcaa gcagagcagt      1560
     taaacaaaac ccatgtattt aacattttta ggtttttgtt ttgttgatgc ttgcctaaca      1620
     tgaacatgct ataaaattag ttaacagaaa aataacttga agtgatgttt tagccttgta      1680
     tgatgttata atatnatagc ctaaaaacag tttccaaata tttggtgatg tgaaacctta      1740
     gagttatgct aagttaaatt aagtaataga tattcattaa ataactagat catttctaag      1800
     gaagataaac tactaaaaca ctactaaatc taagtttatg tttatatact ttttggttct      1860
     tatttttata tggtacagag aggctaaaat atattcgagc ctcttaataa acatgaaaaa      1920
     ttgtattata aaaagtagnn tatacctnta aaaattatga gatggtatat tcataaaatt      1980
     tgctaatgtg cacatacaga atcctggtat atgacagaca gttcacaatt gcctacttcc      2040
     cagttttttt ctgtaaaaga aaagttattg atggttaaaa aatattatct atctatctat      2100
     atatataatt aaaactacta gaaacaataa gactgaggga aacaactttg tatgcaaaat      2160
     atgcnagggt agtaggttag atttttaata aagtatataa aatatgaaaa atgtgttttc      2220
     gttaaggaaa aaaagagtaa ttttgtccta aagtaaaatg agtgattgtt caaaatgaga      2280
     aaggggaaaa gtgtaggact aaagctaaat anatattttt taaaagttgt aaaagttgtg      2340
     gaaaaggaat tttatgtgta gtcaagatgc taatntattt ataaggattt tttaagctca      2400
     awtantgtac taatncanaa ctataatttg gtttccgctc tgttgaaagg acaaagtttt      2460
     cttaaantat tgtaaaagat ttttctttac cttttnaata attnacctag gaagcaaaga      2520
     ttttgtgtct tatcaagata aattccctgt gcttcatgtt gtctttatca tatntttaat      2580
     tacttttgaa agcaaatctt ttcaatttta aaaaagctag ggttattttt ctcgagtatg      2640
     ttacttccta tatttacctc tggaatcttt tattgccact ttgattaaat ggataaccaa      2700
     gtatatttca tagcgacccg taatcctatt taatcaagcg ttcaaacctt ttgacatttt      2760
     tgacaaactt cccaaaatca caattttaaa tgaagtcttt ttgacctcca acctaacttt      2820
     ganattttcc ggagggcctc tgaaaaatct ctaaagaact tgttctttca ccttgtaaaa      2880
     gagagatatt aaactaatta ggcttatttc atatgttaaa ttacatggga agcattgtca      2940
     aataagaaat ggtgcttaac cttctttgag ttatatttgt atgggtacct gttattaata      3000
     taagtgttcc agaaattgta tgaggttcct aaaaatttgt caataccctt gctcttnatg      3060
     atatgtccag cataattatg ttatcagtca taattgcagt tattatgtta aaatgytgta      3120
     tgccacagaa mtaaccaaat ttgcttgtca agtgaactct catcagatct ttaaccatga      3180
     ctattttaag tcttttgtca ctcacagaca gtttttgttt tactctgatt cttctctgaa      3240
     agcatcttac aakcagctac agggcaaagt gcttcatctt caaagaagct catgagaaag      3300
     acaggtactc tgaaatataa acctctgata ctttgcagac catgccactg gactgagtaa      3360
     gaatttccag acttgaatga agaaactgac gggttcatga aactgctaac ccaagatcaa      3420
     gcagaacaag aattaattac atgggactga atnaaccgat gaggatgatt tatagttttt      3480
     tatgtttttt gtttgaaaca ttgctggttc tttaatgttt tgttttccag attcaaggaa      3540
     actttttctt ttcttttaag ctatctataa cttacagcaa tttggtaaag tatacttttg      3600
     tgaacaaaaw tgaaacaatt acttttctct ctacctgatc cctccagaat tcggaaacta      3660
     ttagtgagta ttcttatttt catggcaata tagttatttg cataagttca gtaagaatct      3720
     gttctccttg taacaggaca caattggaaa cactggttat attaccaagg ctttgactag      3780
     aatgtcatat ttgggaatga tgggcataga attagcttta aggaactaaa gttgacttta      3840
     tggaaccaat gcttacaaag ccctcttgga aaaatcggcc tggtacctgg cttacasggt      3900
     tcccggcctt ncaggtgagt aaggaaagtc actttctggc aggcccaagg acctcaggat      3960
     attttgggga cctcaagaag agaggaattc acccaaatct atagatattg caggtgaagt      4020
     ctgatggcga aatccttggc ttggcttcat agccttgaga agcttttaaa agnccaatct      4080
     gagattcctt attaaaagtt ccagcaaagc aaaccttaaa agagcctatg tggtcagtca      4140
     ctattcttgc tgcatttatg taaataatca ggccaagtct aatgagatca gacttatttt      4200
     gcaaacaagt tagtcttact ntgattatct ttggtaaaaa ggggagtgag gtgactatag      4260
     agagaaattt tatgtttcag tggaaaacta tagcgcaccc attatcagat tctagtcctg      4320
     ttcattgttt ttggttttat tatctacctg caaactggac tggatcctga atttttctag      4380
     ttttctccaa tatctggcta caactctcca aactaatgtt tccaattttt ctcccaccct      4440
     tctggcttgg aatcactgaa aattaaaact gcccttttcc tgaagccctg caagctgaaa      4500
     ctggacgact tgatataaac ttcagagaaa tcaccacaac agatcatgtg tgggcagcct      4560
     tcatgacacc caaactgcaa accaggaaag cctgccagct gccactgcct acctcactcc      4620
     agctgaagat gcttcaagcc cagcatctag aaatcttatt gaccggctgc cctctggact      4680
     cagaaactga gtttccaant gttaaccttt gtttttattt tattttcata gaaactaaac      4740
     tcccctcatt aaaggcctga tggctcacac catccagsaa atatcctctg ctaccaagtc      4800
     ccagcagatg attcagctgg tccttaatga acaaaaggcm acccaacaag aaaatggact      4860
     tatattgttc aaaggaaaga agaatgtctc ttctttcctt raacaagagg agggactgac      4920
     aaagattctc tgcttg                                                      4936
//
ID   BTALUL2     repbase; DNA   ; MAM   ; 538 BP.
XX
AC   X05090;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Cow alu-like art2 repetitive sequence 1kb 3' to fetal globin gene.
XX
KW   SINE1; SINE; Interspersed Repeat; Alu repetitive sequence;
KW   Alu-like repetitive sequence; BTALUL2; art2 repetitive sequence;
KW   Repetitive sequence.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-538
RA   Duncan H.C.;
RT   "Novel Alu-type repeat in artiodactyls.";
RL   Nucleic Acids Res 15(3), 1340-1340 (1987).
XX
DR   GenBank; X05090; Positions       1     538.
XX
SQ   Sequence 538 BP; 126 A; 144 C; 92 G; 176 T; 0 others;
     ttctgttcag tccagtggct cagttgtgta caattctttg caaccccatg gactgcagca        60
     tgccaggctt ccctgtccat caccaactcc tggagcttgc tcaaattcat gcccattgag       120
     ttggtgatgc cattcaacca tctcatcctc tgttatcccc ttctcttgcc ttcaatcttt       180
     cccagcatca gggtcttttc caatgagtca gttcttcaca tcacgtgtcc aaagtattga       240
     agcttcacgt tcggtatcag tccttccaat gaatattcag gactaatatc cttcaggttt       300
     gattggtttg atctccttgc agtccaaggg actctcagga gtcttctcca acatcacagt       360
     tcaaaagcat caattcttca gcggtcacct ttcttcattg tccaactctc acatccacac       420
     atgactactg gaaaaaccat agccttgact agatggacat ttgttgataa agtagtgtct       480
     ctgcttttta atatgctgtc tagatttgtg atagcttttc ttccaagaag caagcatc         538
//
ID   MLT1E       repbase; DNA   ; MAM   ; 593 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1E subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MLT1E;
KW   MaLR family; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
RN   [2]
RA   Smit A.F.;
RT   "MLT1E..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1E retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 21-22%.
CC   Pos 384-594 86% similar to MLT1D consensus 3' end.
XX
SQ   Sequence 593 BP; 139 A; 153 C; 154 G; 133 T; 14 others;
     tgtggcagac agactctaag gtggccccca tgatccccgc ctcctggtgt tcacgccctt        60
     gtgtaatccc ctccccttga gtgtgggtgg gacctgtgac ttgcttctaa ccaacagaat       120
     atggcaaagg tgatgggatg tcactcctgt gattacgtta catgattatg taagattccg       180
     tcttgncgnc antcttgctg agagnctctc ttgctggctt tgaagaagca agcngccatg       240
     ttgtgagnng ccanatgaga gggccacatg gcaagggcct ctaggagctg agggcggcct       300
     ccagccgaca gccagcaaga agctgaggcc ctcagtccna cagccgcaag gaactgaatt       360
     ctgccaacaa ccnnagtgag cttggaagcg gatccttccc cagtcgagcc tccagatgag       420
     ancncagccc tggctgacac cttgattgca gccttgtgag accctgaagc agaggaccca       480
     gctaagctgt gcccggactc ctgacccaca gaaactgtga gataataaat gtgtgttgtt       540
     ttaagccgct aagtttgtgg taatttgtta cgcagcaata ganaactaat aca              593
//
ID   L1MD2       repbase; DNA   ; MAM   ; 1106 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MD2) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1M4; L1MD2; L1MD2 subfamily; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1106
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [2]
RP   1-1106
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [2] (Consensus)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 19%.
XX
SQ   Sequence 1106 BP; 409 A; 185 C; 231 G; 274 T; 7 others;
     ctngtatcta gaatatataa agaactctca aaactcaaca gtaaaaaaac aaacaatcca        60
     attagaaaat gggcaaaaga catgaacaga catttcactg aagaggatat acagatggca       120
     aataagcaca tgaaaagatg ttcaacatca ttagccatta gggaaatgca aattaaaacc       180
     acaatgagat atcactacac acctatcaga atggctaaaa taaaaaatag tgacaacacc       240
     aaatgctggt gaggatgtgg agaaactgga tcactcatac attgctggtg ggaatgtaaa       300
     atggtacagc cactctggaa aacagtttgg cagtttctta taaaactaaa catgcamtta       360
     ccatacgacc cagcaattgc actcttgggc atttatccca gagaaatgaa aacttatgtt       420
     cacacaaaaa cctgtacacg aatgttcata gcagctttat tcgtaatagc caaaaactgg       480
     aaacaaccca gatgtccttc aacgggtgaa tggttaaaca aactgtggta catccatacc       540
     atggaatact actcagcaat aaaaaggaac gaactattga tacacgcaac aacttggatg       600
     aatctcaagg gaattatgct gagtgaaaaa agccaatccc aaaaggttac atactgtatg       660
     attccattta tataacattc ttgaaatgac aaaattatag agatggagaa cagattagtg       720
     gttgccaggg gttagggatg ggggtggngn gggggaaggg aggtgggtgt ggctataaaa       780
     gggcagcacg agggatcctt gtggtgatgg aactgttctg tatcttgact gtggtggtgg       840
     ntacacgaat ctacacatgt gataaaattg catagaacta aatacacaca cacacacatg       900
     agtacacgta aaactggkga aatctgaata agatcggtgg attgtatcaa tgtcaatttc       960
     ctggttgtga tattgtacta tagttwtgca agatgttacc attgggggaa actgggtgaa      1020
     gggtacacgg gatctctctg tattatttct tacaactgca tgtgaatcta caattatctc      1080
     aaaataaaaa gtttaattta aaaaaa                                           1106
//
ID   PRE1_SS     repbase; DNA   ; MAM   ; 246 BP.
XX
AC   Y00104;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   05-NOV-1997 (Rel. 2.1, Last updated, Version 3)
XX
DE   Pig SINE element PRE-1.
XX
KW   SINE; Interspersed Repeat; PRE1_SS; Repetitive sequence; SSMIR1;
KW   SSPRE1; SSSINE1.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-246
RA   Singer S.D.;
RT   "PRE1_SS.";
RL   Direct Submission to Repbase Update (19-MAR-1987)Dinah S.Singer,
RL   Immunology Branch,N.I.H., Bldg.10,Room 48-17, N.I.H., Bethesda,Md.
RL   20892..
XX
RN   [2]
RP   1-246
RA   Singer S.D., Parent J.L., Ehrlich R.;
RT   "Identification and DNA sequence of an Interspersed Repetitive DNA
RT   Element in the Genome of the Miniature Swine.";
RL   Nucleic Acids Res 15, 2780-2780 (1987).
XX
RN   [3]
RP   1-246
RA   Frengen E., Thomsen P., Kristensen T., Kran S., Miller R.,
RA   Davies W.;
RT   "Porcine SINEs: Characterization and use in species-specific
RT   amplification.";
RL   Genomics 10, 949-956 (1991).
XX
RN   [4]
RP   1-246
RA   Jurka J., Goremykin V.;
RT   "PRE1_SS.";
RL   Direct Submission to Repbase Update (NOV-1997).
XX
CC   [4] (Consensus)
XX
SQ   Sequence 246 BP; 45 A; 63 C; 82 G; 52 T; 4 others;
     ggagttcccg tcgtggctca gtggttaacg aatccgacta ggaaccatga ggwtgcgggt        60
     tcgatccctg gccttgctca gtgggttaag gatccggcgt tgccgtgagc tgtggtgtag       120
     gtygcagacg cggctcggat ccsgcgttgc tgtggctgtg gtgtaggccg gcagctacag       180
     ctccgattmg acccctagcc tgggaacctc catatgccgc gggtgcggcc ctaaaaaaga       240
     caaaaa                                                                  246
//
ID   SINE1_SS    repbase; DNA   ; MAM   ; 131 BP.
XX
AC   AC129961; AF018149; AJ315771; AJ410870; AJ422131;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Sus scrofa SINE1 element - a consensus.
XX
KW   SINE1; SINE; Interspersed Repeat; SINE retrotransposon; SINE1_SS;
KW   Repetitive element.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RA   Kostia S., Ruohonen-Lehto M., Vainola R., Varvio L.S.;
RT   "Phylogenetic information in inter-SINE and inter-SSR fingerprints of
RT   the artiodactyla and evolution of the bov-tA SINE.";
RL   Heredity 84 (Pt 1), 37-45 (2000).
XX
RN   [2]
RA   Kohany O., Jurka J.;
RT   "SINE1_SS consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 87%.
XX
SQ   Sequence 131 BP; 25 A; 28 C; 41 G; 32 T; 5 others;
     ggagttccct ggtggctcag ygggttaagg atctagtgtt gtcactgctg tggctcrggt        60
     cactgctgtg gtgcaggttt gatccctggc ctgggaactt ccacatgcyg yrggcatggc       120
     caaaaaaaaa a                                                            131
//
ID   SINEC_PV    repbase; DNA   ; MAM   ; 216 BP.
XX
AC   Z33497;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   P.vitulina DNA (clone Pvc3) for SINE retroposon.
XX
KW   SINE; Interspersed Repeat; PVSINEC; retroposon;
KW   SINE repetitive sequence; SINEC_PV.
XX
OS   Phoca vitulina
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Pinnipedia; Phocidae; Phoca.
XX
RN   [1]
RP   1-216
RA   Coltman W.D.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (11-MAY-1994). Coltman D. W.,
RL   Dalhousie University, Biology, Life Sciences Center, Halifax, Nova
RL   Scotia, Canada, B3H 4J1.
XX
RN   [2]
RP   1-216
RA   Coltman W.D., Wright M.J.;
RT   "Can SINEs: a family of tRNA-derived retroposons specific to the
RT   superfamily Canoidea.";
RL   Nucleic Acids Res 22(14), 2726-2730 (1994).
XX
DR   GenBank; Z33497; Positions       1     216.
XX
SQ   Sequence 216 BP; 49 A; 58 C; 45 G; 64 T; 0 others;
     taatgagggg tggcctggtg gctcattcgg ttaagtggct gccttcggtt caagtcattg        60
     atccctgggt cctgggatcg agccccacat ctgggctccc tgctcagcag aaagcctgct       120
     tctccttctc cctctgcctg ccactctgcc tacttgtgct ctctctctct gtcaaataaa       180
     taaaaatctt taaaaataaa taaataaata attgag                                 216
//
ID   MON1        repbase; DNA   ; MAM   ; 273 BP.
XX
AC   .
XX
DT   24-MAR-2000 (Rel. 5.02, Created)
DT   24-MAR-2000 (Rel. 5.02, Last updated, Version 1)
XX
DE   tRNA-related SINE element from monotremes.
XX
KW   SINE; Interspersed Repeat; MIR; MIR3; MON1; THER1; THER2; tRNA.
XX
OS   Monotremata
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing elements with
RT   common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96, 2869-2874 (1999).
XX
RN   [2]
RP   1-273
RA   Jurka J.;
RT   "MON1.";
RL   Direct Submission to Repbase Update (MAR-2000).
XX
SQ   Sequence 273 BP; 67 A; 63 C; 71 G; 71 T; 1 others;
     agagaagcag cgtggcctag tggatagagc acgggcctgg gagtcagaag gacctgggtt        60
     ctaatccngg ctctgccact tgtctgctgt gtgaccttgg gcaagtcact taacttctct       120
     gtgcctcagt tacctcatct gtaaaatggg gattaagact gtgagcccca tgtgggacag       180
     ggactgtgtc caacctgatt agcttgtatc taccccagcg cttagaacag tgcttggcac       240
     atagtaagtg cttaacaaat accataatta tta                                    273
//
ID   CHR-1       repbase; DNA   ; MAM   ; 109 BP.
XX
AC   AB005033;
XX
DT   29-MAY-1998 (Rel. 3.04, Created)
DT   29-MAY-1998 (Rel. 3.04, Last updated, Version 1)
XX
DE   Physeter macrocephalus DNA for SINE retroposon CHR-1.
XX
KW   SINE; Interspersed Repeat; CHR-1.
XX
OS   Physeter catodon
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Cetacea; Odontoceti; Physeteridae;
OC   Physeter.
XX
RN   [1]
RP   1-109
RA   Okada N.;
RT   "Direct submission.";
RL   DDBJ/EMBL/GenBank (1997). Norihiro Okada, Tokyo Institute of
RL   Technology, Faculty of Bioscience and Biotechnology; 4259
RL   Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226, Japan
RL   (E-mail:nokada@bio.titech.ac.jp, Tel:+81-45-923-1136,
RL   Fax:+81-45-923-1136).
XX
RN   [2]
RP   1-109
RA   Shimamura M., Yasue H., Abe H., Kishiro T., Goto M., Munechika I.,
RA   Okada N.;
RT   "Molecular evidence from retroposons that whales form a clade within
RT   even-toed ungulates.";
RL   Nature 388, 666-670 (1997).
XX
DR   GenBank; AB005033; Positions       1     109.
XX
SQ   Sequence 109 BP; 19 A; 29 C; 33 G; 22 T; 6 others;
     gggaattccc tggnggtcca gtggttagga ctcngtgctt tcactgcaga gggcccnggt        60
     tcaatccctg gtcggggaac taagatccca caagctgtgn ngcncagcc                   109
//
ID   YREP_BOV    repbase; DNA   ; MAM   ; 221 BP.
XX
AC   AF223676; Z31587;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Bovinae chromosome Y repeat region - a consensus.
XX
KW   Repeat DNA; YREP_BOV; Repeat region.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RA   Antoniou E., Oulmouden A., Skidmore J.C., Urdaci M.;
RT   "Isolation of a Y-specific bovine DNA fragment using
RT   minisatellite-related PCR primers.";
RL   Anim. Genet 27(3), 214-215 (1996).
XX
RN   [2]
RA   Antoniou A.E.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (25-MAR-1994)Antoniou E. A., University
RL   of Reading, biochemistry and physiology, Reading, berkshire, United
RL   Kingdom, RG6 2AJ.
XX
RN   [3]
RA   Burzynska B.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (12-JAN-2000)Genetics, Institute of
RL   Biochemistry and Biophysics, Pawinskiego 5a, Warsaw 02-106, Poland.
XX
RN   [4]
RP   1-221
RA   Kohany O., Jurka J.;
RT   "YREP_BOV consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [4] (Consensus)
XX
CC   Average similarity to consensus 90%.
XX
SQ   Sequence 221 BP; 52 A; 56 C; 43 G; 70 T; 0 others;
     cctttttctt cttgaagatg catccctggt cactctgttc aaaatgttag aaatgactgg        60
     ctttgaactt gaaatcactc tgacaaagag agtttcagca tcctcattga catgctgcac       120
     tccaacaaag atgacctcag catcatcatt atcctcatct ctgggtttgc cctgcggtct       180
     ttgtctcggg ttcttgtgct tcctcacaca gaagagatgg g                           221
//
ID   SINEC1B1_CF repbase; DNA   ; MAM   ; 164 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Dog SINE element SINEC1B1_CF.
XX
KW   SINE; Interspersed Repeat; SINE element; SINEC1B1_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-164
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1B1_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 89%.
XX
SQ   Sequence 164 BP; 20 A; 54 C; 45 G; 45 T; 0 others;
     gggcagcctg ggtggctcag cggtttagcg cctgcctttg gcccagggcg tgatcctgga        60
     gtcccgggat cgagtcccac atcgggctcc ctgcatggag cctgcttctc cctctgcctg       120
     tgtctctgcc tctctctctc tctgtgtctc tcatgaataa ataa                        164
//
ID   HERVFH21I   repbase; DNA   ; MAM   ; 6529 BP.
XX
AC   .
XX
DT   15-MAY-1998 (Rel. 3.04, Created)
DT   07-OCT-1998 (Rel. 3.09, Last updated, Version 2)
XX
DE   HERVFH21I endogenous retrovirus flanked by LTR21s.
XX
KW   Endogenous Retrovirus; Interspersed Repeat; HERVFH retrovirus;
KW   HERVFH21I; HERVH; LTR21; internal sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-6529
RA   Kapitonov V.V., Jurka J.;
RT   "HERVFH21I..";
RL   Direct Submission to Repbase Update (MAY-1997).
XX
CC   [1] (Consensus)
XX
CC   HERVFH21I is an internal part of HERVH-related endogenous HERVFH21
CC   retrovirus flanked by LTR21s.
CC   However, it has different PBS site similar to Phe tRNA
CC   binding site in intracisternal A-particles from mouse
CC   and hamster genomes. (HERVH48I has similar PBS also).
CC   5 bp target site duplication.
CC   HERVFH2 has been active relatively recently, since
CC   there is a case of 91% identity between its left and right LTRs.
CC   Several LTR-retroelements including GAG-like parts of MER31I and
CC   MER66I from MER4I-group are distantly related to the HERVFH21I:
CC   ----------------------------------------------------------------
CC   start end start end identity
CC   ----------------------------------------------------------------
CC   HERVFH21I 404 977 HERVH48I 363 935 0.62
CC   HERVFH21I 782 945 MER31I 500 664 0.66
CC   HERVFH21I 982 1180 HERVH 1408 1586 0.63
CC   HERVFH21I 1384 1502 MER66I 2361 2479 0.61
CC   HERVFH21I 1503 1817 HERVH 1587 1905 0.63
CC   HERVFH21I 1819 1928 HERVH48I 1435 1546 0.85
CC   HERVFH21I 1929 2267 HERVH 2031 2361 0.62
CC   HERVFH21I 2490 2628 HERVI 2891 3029 0.66
CC   HERVFH21I 2634 3285 HERVH 2714 3356 0.64
CC   HERVFH21I 3192 3599 HERVH48I 2843 3243 0.62
CC   HERVFH21I 3610 3928 HERVH 3668 3990 0.65
CC   HERVFH21I 4017 4242 HERVH 4014 4237 0.68
CC   HERVFH21I 4643 5215 HERVH 4548 5120 0.65
CC   HERVFH21I 5338 5567 HERV9 7189 7398 0.65
CC   HERVFH21I 5582 5804 HERVH 6684 6906 0.67
CC   HERVFH21I 5910 6367 HERVH 7021 7476 0.64
CC   HERVFH21I 6369 6486 HUERS-P3 8748 8859 0.67
CC   ---------------------------------------------------------------
CC   The HERVFH21 consensus sequence (positions 1000-5200) encodes
CC   protein sequences 40-50% identical to the GAG, POL and RT proteins
CC   encoded by Moloney murine leukemia virus (MMLV). ENV protein sequence
CC   (positions 5725-6400) is similar to the ENV proteins from
CC   Mason-Pfizer monkey virus and MMLV.
XX
SQ   Sequence 6529 BP; 1666 A; 2258 C; 1023 G; 1564 T; 18 others;
     ttctggtgcc gaaacccggg aaggcgatag actctggctg ggactcactc tctctctctc        60
     tctctctctc tctctctctt cctctccctc ccctatcacc cctctcccgg ccaatctccc       120
     ccttcccgaa cctgctaaag acccaaagga tctcctaaat tctcccattg ttggcgacct       180
     catccaccat caaagcctcc accagggtga gtgaaaagag actgttgccg ttccccagaa       240
     cccttgacca tccatctctc cacttccaaa agacccagcg ctgggccaag ggcttcctcc       300
     cgtctctggg cctccaggag gccctcgatt cctccatttc agggatgcct gactcggcgg       360
     ttacctcctt tattccggac aagttccgtg ggaaagggga cgccctctcc caccgtcctt       420
     gtcatcagca gtctcttctt cccctaccct cccctcctcc attcactata ggagcctccc       480
     aatccactcc ttccaagacc accccgctgg gtgcctcctc cgcaatctca atgctctcgg       540
     cctccattca gaaatccgtt ctaagaggct tatctttttc aacgttctca gatacagaca       600
     acttttgcca tcgaaatggg aaatggtctg agattcctta tgttcaggct ttcttcactc       660
     tccgtaaccg cccttccctc tgtcagtcct gttctacttt ccaaatcctc ctcgcccgct       720
     ccaaacctga ctcgcctcct acccccctcc ccacagcccc agctgacgat tcctcttcct       780
     ttgaccctgc caattttccc cttccccgaa agcatcacga tcctccacca gagcatcctg       840
     atcctccacc gtatgtcccc actccagctc tacctttctc ccctcctctc tccaaccacc       900
     ctgcttctga ctctgggtcc tctctctctc cacccctcac cccctctttg gcccaagatg       960
     ctcagcaacc agctcccttg cttcctcttc aggaagcagc aggagtcgag aggatcgtcc      1020
     gtgtccacgt tcccttctcc ctctctgatc tctcccaaat taagaaacgt ctcaggtcct      1080
     tttcctccga tcctgacact tatatcaaaa agtttaaata ccttacccaa tcttacgaac      1140
     tcacttggca tgatctctac attatcctct cttataccct cctcccagaa gagaagaaaa      1200
     gatgtggctc gcagctcagg cacatgctga tgatcttcat cggcaagatc ctactaagcc      1260
     cgtagaggcc gctgcagtta cctgggaaaa gccttcccgg gagtaccaac ccacaaaccc      1320
     cagccgagca tctcataacc acatgattac ttgcctcatt gcaggcctta acaaagctgc      1380
     ccataaggct gtaaactttg aaaadcttaa agaaatctcc caaaggcchg acgaaaatcc      1440
     cgcccaattt cttttccgcc ttacagaggc cttccaaaaa tatacccacg ttgaccccgc      1500
     ctcccaggaa ggaactattg ttcttaacac tcagtttatc tcccaatcca ctcccaatat      1560
     ttggcgcaag cttcagaagc ttgacgacag ccctcaaacc ccacaacgag accttcttaa      1620
     tttagccttc aaagtcttta acaatcgtga tgaggaaaga aaggcaaaaa caggcagagt      1680
     ttcaaacgct tgcctttgcc atcaggggcc ctgcaggcca cgggacgcag ctccacatgg      1740
     aagcctccta gcaattcact tccacctggc gcctgtttca agtgcggcaa tgaaggccac      1800
     tggtccagac aatgccctaa cccagataag cccaccaggc cgtgcccctc tgcggaggac      1860
     gccactggaa gtcagactgt gagtggcccc cgcaaggact gcccccatcc cttcctgagc      1920
     cggccaaaac ctcctactca gatctcatcg gccttgccac tgaagactga cggtgccctg      1980
     gaacggacgc cccggcaact accatctctt catccgagcc aagggtaacc ctgatggtgg      2040
     caggtaggcc agtatattth tttttttcaa tactgggaca acctactctg ctttacctaa      2100
     tttttcagga cccaccgagt cctcccaggt ctctgttgta ggaattgatg gacaagtctc      2160
     caaaccccga gccacccctc cactcttctg ttccctgcac aatttttcct tcactcactc      2220
     tttcttagtc ctgccctcat gtccaactcc actcctaggc agagacatcc tttcaaaatt      2280
     ccacactact catgtcttcc tgtccaccgc aaccagagtc cctcctgctc ctctctgcta      2340
     gtccggcccc tgacccctct ccccagcacc cgctacccac ctctctcgtt aacccagtag      2400
     tgtgggacac caccacccct tccatagctg ctcaccagga ccccatcaaa atccagttaa      2460
     aagacccctc taaatttccc aacattcccc aataccccat ttccctaaca caccaaaaag      2520
     gcttacaacc catcataaac aagctctgct cacgccgtct tcttagacca acacgttctc      2580
     catataacac ctccatcctc cccgttaaaa aatctgacgg ctcataccaa ctcgttcagg      2640
     acctccgagc catcaatcag gctgtcctcc ctattcatcc cgtagtccct aacccctata      2700
     cacttctctc tctcatcccc tccaacacca cccactacac cgcaattgac ctaaaagatg      2760
     ctttctttac cattccccta caccccgatt cccaaaacct ctttgctttc acccggaccg      2820
     accccgacac cctccagtca caacaactca cgtggactgt cctccctcaa ggcttccagg      2880
     atagccttct tttcttcggg caagccctag cccaagacct tgcctccttg gatctttccc      2940
     ccagccgcct tcttcaatat ctagatgacc tccttctctg tagcccctcc ctaaaaaact      3000
     cccaaactca cactgccacc cttctgaatt tccttactaa taaaggctat agggtctccc      3060
     ctctaaagaa cagctttcca cctccatggt gacctactta ggaattcaac tttcccctgg      3120
     ggcccgggct atgaccccag cccgagcggc cttaatagat aaataatcta ccccgccctc      3180
     ttccaaaagc gaaatccttt ccttcctagg gctagcaggc ttctttagaa tatggattcc      3240
     caactttgcc ctcctagctc accccctcta taaagcggcc aaaggccctc tcaatgaacc      3300
     cctaaacycc tcacataaca tactccccag cttccgcgaa ctccaaaccg ctcttgtcac      3360
     tgcaccagct ctgtccttac ctaatatctc ccaacctttc actctctata ctgccaaaaa      3420
     ccgaggaata gccctcggtg tcttaggaca acagaaagaa aatcctcctt cctttgcccc      3480
     tgtagcctac ctctctaaac aactagacaa cacagtcaaa gggtggccaa cctgtcttaa      3540
     agtactagca gcggcagcca gttttagctc tagaaagcag gaaactaaca ttcagccaaa      3600
     ataccaccgt ctacagtcct cataatctac aagatctcct ctcctcccga gcattaagct      3660
     cccttcctcc ttcccggatt caattactcc atgccctctt tatcaaaaat cccaaattca      3720
     gtcttgccaa aagtgctccc ctcaacccag catccttact ccccgtatcc tcttcccttc      3780
     ctactcattc ttgcactgac atcctagacc acctgcagcc acactttcca aacatttcct      3840
     ccgagcctct caccaacccc aatgatcaac tattcataga tggctcctct tccgggccca      3900
     ctggctcccc caaaattgct ggatatgcag ttgtttccct tgaccaagta attgaagcta      3960
     agcccctacc tccaggaacc tcctcccaaa aagcagaact cataggctct caccagagcc      4020
     ctaacccttt ccaaaggcaa acgagtcaac atttatacag actccaaata tgcctatcac      4080
     attcttcatt cccacgccgc catctggcaa aagagaggat tccttactgc caaaggaacc      4140
     cccatcacta acggctcccc ttatttacca actccttcag gctgcacacc tcccaactaa      4200
     agcaggagtt atacactgtt gaggacatca aacaggttca gaaaggcctt tgagggaaca      4260
     gattaatctc aagaggrarc asraargcyr ayaaggcagc aragaacaga atctcaggag      4320
     ggatcagaaa tgaaatctca agagggaaca gaaaggccga tgaggcagca aaagaagcct      4380
     ccctttcttc tgcccctgcc tctctcctcc tcattacccc tgcaatccaa cccaagwact      4440
     ctcccactaa gaaaaggctt cactactaca acaaggaacc tccttccaag gggactggat      4500
     agtcaaaaat caaaagctcg tcctccccca agagcaaacc aaagaaattc tgacatctct      4560
     tcaccaatcc ttccatatcg gtgcgcgccc cctgtaccta ctcctttgcc cttatttctc      4620
     ctcyccccay ctattcacct cactaaaaga cataacctca aactgtcata tatgctctgt      4680
     tacttcctcc caaggggccc tccrctctcc atctattcct acacatcagc taagaggaac      4740
     actcccaggg gaggactggc aaatagactt cacccacatg cctcccgtca agagaacaaa      4800
     atttcttctt actcttatag acaccttctc tgggtgggta gaagcatttc ctacctcttc      4860
     agaaaaggcc gcagaagtct cccaaattct tgtaacagaa atcatcccta gatttggtct      4920
     ccctggctcc atacaatcag acaatggccc ctagcttcat ctcccaaatc actcaacagg      4980
     tttctcagtc ccttggcatc cagtggcgtc tccatatccc atgctggccc cagacatccg      5040
     gaaaagtcga aagggcaaat gggatcctta aggctcagtt aaccaaactc actcttgaag      5100
     tccaaaaacc atggacctcc cttttgccca tagcactgga gagcattaga gccagtccaa      5160
     aagcaccctc cttcctcagt ccatttgagt taatatacgg acgccctttc ctcttacaaa      5220
     acaggccccc ttctaactct cagctaggag aatacctccc aacagtctcc ctcatgagct      5280
     atctcctctg ccaacaagcc gaccagggcc ctcccaaaac cccacgaagg cccttgacac      5340
     ctcccacctc cttaacaaaa attcagggta ctgtaatggc cgacacctcc cctatttatc      5400
     cctcttctct tggctcccct ctccatacac catccttacc ctatacccac cacccgggac      5460
     ggtctccttc tcccaacatc caacaacact cccacatgca tcttagtgga cagaaaacgc      5520
     ttcctcttac actgggaaaa aaaaaaaaga acacaaaaag cctcccagct taaaccaaac      5580
     accctttaac aaccacttct gacagcagcc ctagctggga ccctaagagt atggatgatt      5640
     gagaataaca aaatagtaca tctttttagc atacacaacc agttccgtct accaagccaa      5700
     ggcatacttt tcctatgtga tacctcaact tatattgccc tcccctctaa ctggcgaggc      5760
     acctcagcac cctgcttttc ctcagtccaa aaatcactgt tgccccagga gaccagcccc      5820
     tactaatccc agttaatatc cctatctgac acgacsatac tatacaactc atacctctgt      5880
     tagtaaccct cagaataact acaggagttg gaactgggat tgtgggatta accacctccg      5940
     tttcctatta ccaatccctc tccaaagact tcacgaatag cttggaagag atagccaaat      6000
     ccattacaac tctccaatca caaataaatt cttagcagca gtagttcttc aaaaccgcag      6060
     aggcttagac ctgttcacag cgaaaaaagg agaactctgc ctttttctag atgaacagta      6120
     ttgcttttat cttaaccaat ctggcgtgat acaggatact gtaaaaagac taaaggaccg      6180
     agcacaaaaa attaaagaaa acgtcctctg atggccagcg tggccctcct ggtcttttag      6240
     tacctggttt ccatggctac tgcccctcct aggccctgcc gtaaccattt ttctctttct      6300
     agcatttggc ccttgtctct tacatctcct tacccagttt ttacagggcc gtgtcagagc      6360
     cttcacccac ggaacagtac aagacatgat gctactccaa gaataccgac ggctccagga      6420
     acagcagtcc ctactgtcca gccttccccc ccaaccatcg ccccttccca gcaagaagca      6480
     gccagaggac aacggcgccc ctcttctatt acctattaaa aggctggaa                  6529
//
ID   LMER1       repbase; DNA   ; MAM   ; 352 BP.
XX
AC   .
XX
DT   22-1995 (Rel. 1.11, Created)
DT   15-OCT-1997 (Rel. 2.09, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   LMER1; Repetitive sequence.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RP   1-352
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J.,
RA   Smit A.F.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha.";
RL   Genetica 98, 235-247 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 352 BP; 60 A; 77 C; 66 G; 57 T; 92 others;
     gagactgmct gccywgmcca tgcrrgaggt wrrgagggca tggcamrcca tgcctccysg        60
     garggacycy ayrrcctgrc ygctggcagg tggcrggagc ccasrcacay yycycyccwy       120
     tsytgaaggc ctgtaattgt ccatcaggta aacwgctccc gtgtrgcyrk ryccawaksm       180
     cmwcmwgrar gctaccrtag gctaygtgay cttcaagmtg attgkagrag catwkcrgyr       240
     ccaayatyrs ctytatccta yagaatyagt rytgccctga aytagytacw cccyttctgc       300
     ctgcccttya rcarmststg cmkkstyrtt aataaagtgg ayryrtycac yg               352
//
ID   MER35       repbase; DNA   ; MAM   ; 290 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER35 repetitive sequence - a
DE   consensus.
XX
KW   MER35; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment..";
RL   Nature Genet 3, 137-145 (1993).
XX
RN   [2]
RP   1-290
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 290 BP; 98 A; 47 C; 90 G; 55 T; 0 others;
     gatgtggcgt ttgagtggac acgggggaag aaacaagtaa tatgaataac atggtgagac        60
     agaaagagtt gtggacagag ctgtgggaaa tatgagagat aaggagagag atactgaaaa       120
     gagcgttaag agagatgaag atagggtgtc tggcccatga aggccctcgt gaagagcaat       180
     gctgaataga tgaatgaacc tcaatgccca gcagtggtgg gatgaaaagg ggatcctgtg       240
     cagaaaccac actacccatc agagaagcaa ctctgctcgt ttccccttga                  290
//
ID   HERVR       repbase; DNA   ; MAM   ; 7392 BP.
XX
AC   D10032; D00088; N00088;
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   19-FEB-1997 (Rel. 2.01, Last updated, Version 1)
XX
DE   Baboon endogenous retrovirus (BaEV), internal part.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; HERVR; LTR4 related;
KW   capsid protein; endonuclease; glycoprotein; protease;
KW   reverse transcriptase.
XX
OS   Papio hamadryas
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Cercopithecidae;
OC   Cercopithecinae; Papio.
XX
RN   [1]
RP   1-7392
RA   Kato S., Matsuo K., Nishimura N., Takahashi N., Takano T.;
RT   "The entire nucleotide sequence of baboon endogenous virus DNA: A
RT   chimeric genome structure of murine type C and type D retrovirus..";
RL   Jpn. J. Genet 62, 127-137 (1987).
XX
DR   GenBank; D10032; Positions     556    7947.
XX
CC   CDS 430..2043
CC   /gene="gag"
CC   CDS 2020..5613
CC   /gene="pol"
CC   mat_peptide 2404..4434
CC   /product="reverse transcriptase"
CC   mat_peptide 4435..5610
CC   /product="endonuclease"
CC   CDS 5680..7371
CC   /gene="env"
CC   /codon_start=1.
XX
SQ   Sequence 7392 BP; 1991 A; 2113 C; 1675 G; 1613 T; 0 others;
     tgggggctcg tccgggattt gagaggcggc cagaggacac cggccccttt tccttttcgg        60
     cagaaaccgc gcggccccgg ccaccggtgg cggacggacg acgggacgac tcttgtgtgt       120
     agtcaggtac tttatttttg ttctgtcttt aatctctgag gtcggccaac cttcgtagga       180
     gtgtagaggg aggacagacg tgtcctggac cctcacactc cgaccccggg ggacgccccg       240
     gcggtcgtct ggaggaaggc tgatgacacc gtcagcctcc tcaaatctga aggcaggttc       300
     cccctgccat ctgaatcact tgtagtactt tggcgccatt ctctggccgc gcggctcatc       360
     tgtttttgtc tggtttgtgt tgttactgtt gtcttattta tatgtgtgta tgagcctaag       420
     gacgggacaa tgggacagac gctaacaact cctctatctt tgactttgac gcacttttca       480
     gacgtccggg ccagagccca caatctttcc gtaggagtcc gaaaaggacg atggcaaact       540
     ttctgctcgt ccgagtggcc cacccttcat gtcgggtggc cccgggacgg aacttttgac       600
     ctctccgtta ttttgcaggt taagacaaag gtaatggatc ctgggccgca tggtcacccg       660
     gaccaagtgg cctacatcat cacctgggag gatctcgtcc gaaatcctcc gccttgggtg       720
     aaaccctttc tccatacccc ttctacatcc aagtccaccc tccttgccct agaagtccca       780
     aagaaccgga ccctggatcc gcctaaaccc gtactcccgg atgagtcgca gcaagacctc       840
     ctcttccaag accctctacc tcatccacca cataatcccc tcctggaacc cccaccctac       900
     aactcaccct cgccccctgt cttgtccccc gtttctccta ccaccccttc tgcccccact       960
     ccttcctctc ttgtctcctc gtcgaccccg ccttcctctc cagccccacc tgaactcacc      1020
     cccaggaccc cgccacaaac cccccgtctc cgcctccggc gggccgaagg tcaggatggc      1080
     ccttccacct ggcaatcttc cctttttccc cttcgcacgg tcaaccgcac gatccagtac      1140
     tggccctttt ctgcctcgga cctctataat tggaaaaccc ataacccctc cttttcccaa      1200
     gacccccagg ccttgacctc gttgatagaa tcaattctcc tcacccacca gcctacctgg      1260
     gatgattgtc aacagctttt gcaggtcctt ctaaccaccg aagaaaggca gcgagtcctc      1320
     ctggaagccc ggaaaaatgt gccggggcct ggaggccttc caacccagct ccccaatgaa      1380
     atagacgagg gatttcccct cacccgcccg gactgggatt atgagacagc accgggtagg      1440
     gagagtctcc gaatctatcg ccaggctctg ttggcgggtc tcaagggggc aggaaaacgc      1500
     cccaccaatt tggccaaggt aaggactata actcagggaa aagatgaaag cccggcagcc      1560
     tttatggaaa gacttctgga agggtttcga atgtatactc catttgatcc agaagcacca      1620
     gaacacaagg ctaccgtggc catgtcgttc atagatcagg cagcactaga cataaaagga      1680
     aaactccaaa ggctagacgg gatccaaact catgggctgc aggaattagt aagggaggca      1740
     gaaaaggtat acaataaaag ggaaacccca gaagaaagag aagctaggct tataaaagaa      1800
     caggaagaac gggaagatcg gagagacaga aaaagagata agcatttaac caaaatcctg      1860
     gcagccgtag tgactgaaaa aagggcagga aagtcagggg aaacaagaag gcggcctaaa      1920
     gtagataagg accagtgcgc ctactgcaaa gagcgagggc attggatcaa ggactgcccc      1980
     aagcgtccta gagaccagaa gaaacccgcc cctgtcctca ccttaggtga ggacagcgaa      2040
     taggggtgtc agggctctgg agcccccccc gagccccggc taactctatc tgtagggggg      2100
     catcccacca ccttcttggt ggacacaggc gcccaacact cggttttgac caaggcaaac      2160
     ggacccctgt cctctcgtac atcttgggtc cagggggcaa caggaagaaa gatgcacaaa      2220
     tggactaacc gccggacagt taacctaggg caaggaatgg tgacacactc cttcttggtg      2280
     gtacctgaat gtccgtaccc ccttctgggg cgagatctcc taaccaaact cggagctcag      2340
     atccacttct ccgaggcagg ggcccaggtg ttagaccgag atggccaacc catccaaatt      2400
     ttgactgtgt ctctgcaaga tgaacaccgg ctttttgaca tcccggtcac caccagcctc      2460
     cctgatgtct ggttacaaga ttttccccaa gcttgggcgg aaacgggagg acttgggcgg      2520
     gccaagtgtc aagccccaat cataattgat ctaaagccca cagcggtgcc tgtatctatc      2580
     aaacaatacc ccatgagcct agaagctcat atgggcattc ggcaacacat tatcaaattt      2640
     ctagaacttg gagttttgcg accttgtcgc tcaccctgga atactcctct tctgccagta      2700
     aaaaagcctg gtacccagga ttacaggccc gtccaagatt tgagagaaat taataaaaga      2760
     actgtggata tccaccctac ggtccccaat ccttacaact tgctcagtac cttaaaacca      2820
     gactacagct ggtataccgt actggactta aaagatgcct tcttttgttt acccctggcc      2880
     ccccaaagcc aggaactatt tgcctttgag tggaaggacc ctgagagagg aatctcaggc      2940
     caattgacct ggactcgact tccccagggg ttcaaaaact ctcccactct cttcgatgag      3000
     gctctccaca gggacctcac cgacttccgg acccagcatc cagaagtgac cctgctccag      3060
     tatgtagatg acctcctctt ggcggccccc acaaagaaag cctgcacgca aggtactagg      3120
     catctactcc aggaactagg tgagaaagga taccgggcat ctgccaagaa ggcacaaatt      3180
     tgtcagacca aggtaactta cctggggtac atactgagtg agggaaaaag gtggctcacc      3240
     cctgggcgca tagagactgt ggctcgcatt ccaccgcccc ggaatcccag agaggtgcgt      3300
     gaattcctgg gaactgctgg gttctgtcgc ttgtggatac ccggttttgc tgaattggcc      3360
     gccccccttt acgcactcac caaggaaagc acccctttca cctggcagac agagcatcaa      3420
     ttggcttttg aggcactaaa aaaggcactc ttgtctgccc cagcccttgg gttaccggac      3480
     acctcaaagc cctttaccct cttcctggac gaaaggcaag ggattgccaa aggagtcctg      3540
     acccaaaaat tggggccttg gaaaagaccg gtagcatacc tgtccaagaa gctggaccct      3600
     gtggcggccg gctggccccc atgtcttcgt atcatggcag ccaccgctat gctggtcaaa      3660
     gactctgcta agttaaccct tgggcagcca ctgactgtta ttactccaca tactctagag      3720
     gccatagtgc ggcagccccc ggaccggtgg ataaccaacg cacgcctaac ccactaccag      3780
     gccctcttac tggacacgga ccgcgtccag tttggccctc cggtcaccct aaaccctgct      3840
     acgctgctgc cggtaccaga aaaccaacca agcccacacg attgtcggca agtactggct      3900
     gagacccatg gaacacgaga agaccttaaa gaccaagagc tcccagacgc ggatcacacc      3960
     tggtacacag acggcagcag ttaccttgac tcaggtactc ggagggcggg agcagcggta      4020
     gtagacggac acaataccat ttgggcacaa tcactacctc ctggcacgtc tgcacagaag      4080
     gctgagttaa tagcactaac caaggcccta gagctgtcca agggaaagaa agctaacatt      4140
     tatactgata gccgatatgc ctttgcaacg gctcatactc atggaagtat ctatgaaaga      4200
     agaggtctcc taacctcaga aggaaaggaa atcaagaaca aagctgaaat aattgcctta      4260
     ttaaaggccc tttttcttcc tcaagaagtg gctataattc actgccccgg gcatcagaaa      4320
     ggacaggatc cagtcgcagt aggaaacaga caggctgacc gagtggccag gcaagccgcc      4380
     atggcggaag tactgaccct agccacagaa cctgacaaca ccagccacat aactattgaa      4440
     catacttata cctccgaaga ccaggaagaa gcaagagcca taggggctac agaaaacaaa      4500
     gacactagaa actgggaaaa agaagggaaa atagtccttc cccaaaagga agccctggca      4560
     atgatccagc agatgcatgc ctggacacac ttgggtaatc gaaagctaaa attgttaatt      4620
     gaaaaaactg actttctaat cccaagggca agtacactca tagagcaagt gacatctgcc      4680
     tgtaaggtct gtcagcaggt aaacgctggg gctacccgag tgccagcagg gaaacggact      4740
     cgtggtaacc gcccgggagt ctattgggaa atagacttca ctgaagtaaa acctcactat      4800
     gctgggtata agtacttact agtgtttgta gatacctttt caggatgggt agaagccttt      4860
     cccacccggc aagaaacggc acacatagta gccaagaaga tcctagaaga aatctttcct      4920
     agatttggac ttcccaaggt aattgggtca gacaacgggc cggccttcgt ttcccaggta      4980
     agtcaggggc tagccaggat actggggatt aattggaaat tgcattgtgc ttatagaccc      5040
     cagagctcag gacaggtaga gagaatgaat agaacaataa aagagaccct tactaaattg      5100
     accttagaga ctggcttaaa agattggaga cgcctcctat ctctagctct attaagagcc      5160
     cggaatacgc ctaaccgctt tgggctcact ccatatgaaa tcctctatgg aggacctccc      5220
     cctttgtcaa ccttacttaa ctccttttct ccctccaatt ctaagactga cctacaggcc      5280
     cggctaaaag gactacaagc agtacaggcc caaatctggg cccccttggc agaactgtac      5340
     cggccaggac attcgcagac cagccacccc ttccaggtgg gggactccgt ctacgttaga      5400
     cgacaccgtt ctcagggact ggagcctcgg tggaaaggac cctacattgt tctcctgacc      5460
     acacccacag ccataaaggt tgacggaatc gccacgtgga ttcacgcatc ccacgccaag      5520
     gctgctccag ggacgcctgg accgacgtcg tccggaactt ggagactccg ccgctccgag      5580
     gaccccctta agataagact ctcacgcact tgacttctta cttgcccttg tcctcctacc      5640
     ccgcgccgta catagcagta acccctcata tagtccaaga tgggattcac aacaaagata      5700
     atcttcttat acaacctagt actggtctac gcggggtttg acgaccctcg caaagccata      5760
     gaactagtac aaaagcgata tggccgacca tgcgattgca gcggaggaca agtgtccgag      5820
     cccccgtcag acagggtcag tcaagtgact tgctcaggca agacagctta cttaatgccc      5880
     gaccaaagat ggaaatgtaa gtcaattcca aaagacacct ccccaagcgg gccactccaa      5940
     gagtgcccct gtaattctta ccagtcctca gtacacagtt cttgttatac ctcataccaa      6000
     caatgcagat caggcaataa gacatattat acggctactc tgctaaaaac acaaactggg      6060
     ggcaccagtg atgtacaagt attaggatcc accaacaaac ttatacaatc tccctgtaat      6120
     ggcataaaag ggcagtctat ttgctggagc actacagctc ctatccacgt ctctgatgga      6180
     ggaggtccat tagacaccac aagaattaaa agtgttcaga gaaaactgga agaaattcat      6240
     aaagccctat atcctgaact tcagtatcac cctttggcca tacctaaggt tagagataac      6300
     ctcatggtcg atgcccagac tttaaacatt ctcaatgcca cttacaactt actcctaatg      6360
     tccaacacga gcctagtgga cgactgttgg ctttgtttaa aattaggtcc ccctactccc      6420
     ctcgcaatac ctaacttcct attatcctac gtgactcgct cctcggataa tatctcttgt      6480
     ttaataattc ccccccttct agttcaaccg atgcagtttt ccaattcatc ttgcctcttt      6540
     tccccctcct acaacagtac agaagaaata gatctaggcc atgttgcctt cagcaactgt      6600
     acctccataa ccaatgtcac cggtcccata tgcgctgtaa atggttcggt ctttctctgt      6660
     ggcaataaca tggcatacac ttatctaccc acgaactgga cggggctttg cgtcctagca      6720
     actctcctcc ccgacattga catcattccc ggagatgaac cggtccccat ccctgctatt      6780
     gatcatttta tatatagacc taaacgggcc atacagttta ttcctttact agcagggcta      6840
     gggatcaccg cagccttcac aacaggagct acaggcctag gtgtctctgt gacccaatat      6900
     acaaaattat ctaatcagct aatttctgat gtacaaatct tatctagcac catacaagat      6960
     ctgcaagatc aagtagactc attagccgaa gtggttctcc agaacagaag ggggctagat      7020
     ctacttacag cagaacaagg aggaatctgt ttagccctgc aagaaaaatg ctgcttttat      7080
     gttaacaagt cagggattgt gagagacaaa ataaaaacct tacaagaaga actagaaaga      7140
     cgtagaaaag atctagcttc caacccactt tggactgggc ttcaagggct cctcccttac      7200
     ctcctgccct ttcttggccc tctacttacc ctcctgctct tactcaccat tgggccgtgc      7260
     atttttaacc gtctaaccgc ttttattaat gataagttaa acataataca cgctatggtg      7320
     ctaacccaac agtatcaggt gctcagaacc gatgaagaag ctcaagattg agcctctaag      7380
     acacaagaaa ag                                                          7392
//
ID   SAT_EC      repbase; DNA   ; MAM   ; 225 BP.
XX
AC   .
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Equus caballus satellite DNA, a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SAT_EC; repeat unit; satellite DNA;
KW   tandem repeat.
XX
OS   Equus caballus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Perissodactyla; Equidae; Equus.
XX
RN   [1]
RA   Wijers R.E., Zijlstra C., Lenstra A.J.;
RT   "Rapid evolution of horse satellite DNA.";
RL   Genomics 18(1), 113-117 (1993).
XX
RN   [2]
RA   Kohany O., Jurka J.;
RT   "SAT_EC Consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 98%.
XX
SQ   Sequence 225 BP; 57 A; 57 C; 62 G; 49 T; 0 others;
     gatcaggcct gcaaagaaac tgcgtttcac aggcctttgg aagagatgtt cccggtaggc        60
     tgtaagagca ctgtgcagag cgagttgttt cttagcttcc caaagagctg gaagcaagat       120
     gctgtggggc ccaactcgcc ctttggaaag aagcctgcac gttgtgcctt tcagctctag       180
     ggcaaagtag cacacccaga gcagaagtcc tacttcagcc agatc                       225
//
ID   TAL-1       repbase; DNA   ; MAM   ; 224 BP.
XX
AC   AB108790; AB108813; AB108816; AF195918; AF195919; AF195920;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   SINE like sequence from Talpidae - a consensus.
XX
KW   SINE; Interspersed Repeat; SINE-like; TAL-1.
XX
OS   Mogera robusta
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Talpidae; Mogera.
XX
RN   [1]
RA   Nakata A., Kuro-o M.;
RT   "Analysis of the phylogenetic relationships in the Japanese
RT   Insectivora based on the DNA sequences of the short interspersed
RT   repeated elements (SINEs).";
RL   Unpublished.
XX
RN   [2]
RA   Nakata A., Kuro-o M.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (18-APR-2003)Akifumi Nakata, Department
RL   of Biofunctional Science, Faculty of Agriculture and Life Science,
RL   Hirosaki University; 3 Bunkyo-cho, Hirosaki, Aomori 036-8156, Japan
RL   (E-mail:nakata@cc.hirosaki-u.ac.jp, Tel:81-172-39-3591).
XX
RN   [3]
RA   Borodulina R.O., Kramerov A.D.;
RT   "Short interspersed elements (SINEs) from insectivores. Two classes of
RT   mammalian SINEs distinguished by A-rich tail structure.";
RL   Mamm. Genome 12(10), 779-786 (2001).
XX
RN   [4]
RA   Kramerov A.D., Borodulina R.O.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (18-OCT-1999)Evolution of Eukaryotic
RL   Genomes, Engelhardt Institute of Molecular Biology, 32 Vavilov St.,
RL   Moscow 117984, Russia.
XX
RN   [5]
RA   Kohany O., Jurka J.;
RT   "TAL-1 consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [5] (Consensus)
XX
CC   Average similarity to consensus 86%.
XX
SQ   Sequence 224 BP; 37 A; 78 C; 48 G; 55 T; 6 others;
     cctccctggt ggcacagtgg rttgagtgtc agcactgcaa agctgtgtgc agccactgca        60
     grrtgasttc aatccctggc cagggagcaa cccacatggy gcagcagacc tctcctgtct       120
     crcccgctgc tcccctcagc agtgtatttc attatctgcc tgttctgctc cccactctgt       180
     ctctggtgaa tcctctcacc ccccgcaccc agctcttgta tgaa                        224
//
ID   SSRS2       repbase; DNA   ; MAM   ; 1258 BP.
XX
AC   X16513;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Pig repetitive DNA.
XX
KW   SAT; Satellite; Simple Repeat; Repetitive DNA; SSRS2; satellite DNA;
KW   tandem repeat.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-1258
RA   McGraw R.;
RT   "SSRS2.";
RL   Direct Submission to Genbank (25-AUG-1989)McGraw R., University of
RL   Georgia, Dept of Physiology and Pharmacology, Riverbend Research
RL   Laboratories, Athens, Georgia, USA 30602..
XX
RN   [2]
RP   1-1258
RA   Akamatsu M., Chen Z., Dzuik J.P., McGraw A.R.;
RT   "A highly repeated sequence in the domestic pig: a gender neutral
RT   probe.";
RL   Nucleic Acids Res 17, 10120-10120 (1989).
XX
DR   GenBank; X16513; Positions       1    1258.
XX
SQ   Sequence 1258 BP; 320 A; 344 C; 251 G; 343 T; 0 others;
     gaattcactg cattcatttg ggatccattg cgccacgatg catggaatcc atcgcgttca        60
     atcaaaatcc attgcaccac actgcatgga atccactgca ttctctcgag atccattggg       120
     ccacgctgca tcgaatccac tgcattcaat cgggatccat ttagccacgc tgcatggaat       180
     acactgcgtt caatcgggat gcatttaacc atgctgcatc gaatccactg cattcagtga       240
     cgctgcatgg aatccactgc attcaatcgg gatgctttgg gcctcgctgc ataaaatcca       300
     ctgcatttaa tcgggatgca ttgggcctca ctgcatggaa tctactgcct tcaatcatgc       360
     tgcatggaat ccactgcatt caatcaagct gcataaaatc ccctgcattt aatagggttc       420
     aacttctcca tgctgcatgg aatccactgc attcaatcat gcttcattgc aaccagtgca       480
     ttcaatcggt accatagggc cacgcttcat ggaatccact gcattcaatc atgcttcatt       540
     gcaacccctg cattcaatcg ggaaccattg ggccatgctg catggaatcc actgcattca       600
     aacacgctgc atggaatcca ctgcattcaa tcgggatgct ttgggccatg ctggataata       660
     tccactgcat tcaatcggga ttcattggcc tcactgcctg gaatccactg cattcaatca       720
     tgctgcatgg aatccactgc attcaatcat gctgcataaa atccactgca ttcaataggg       780
     ttccatttct tcacgctgca tggcatacac tgcattcaaa cacgctgcat ggaatccact       840
     gcattcaatt gggatccatt gggcacgctg catggaatcc actgcattca tcgggatcca       900
     tttaaccccg ctgcatggaa tgcacttcgt tcaatcggga tgcattttac catgctccgt       960
     ggttttcact gcattcaatc ataatgcatg gaaaccactg catcaatcgt gatgcatttt      1020
     accatgctgc atggaatcca ctgcattcag tgatgctgca tggaatgcac taccttcaat      1080
     cgggatgctt tgggccatgc tgcataaaat ccactgcatt taatcgggat gcattgggcc      1140
     acgctccatg gaatcaactg cattcaatca tgctggatgg aatccactgc attcaaccgg      1200
     gatgcatttt accatgctgc atggaatgta ctgcattcaa tcacgctgca tggaattc        1258
//
ID   BMSAT1      repbase; DNA   ; MAM   ; 422 BP.
XX
AC   X52706;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Blue whale satellite repetitive DNA.
XX
KW   SAT; Satellite; Simple Repeat; BMSAT1; Repetitive sequence;
KW   satellite DNA.
XX
OS   Balaenoptera musculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Cetacea; Mysticeti;
OC   Balaenopteridae; Balaenoptera.
XX
RN   [1]
RP   1-422
RA   Arnason U., Widegren B.;
RT   "Composition and chromosomal localization of cetacean highly
RT   repetitive DNA with special reference to the blue whale, Balaenoptera
RT   musculus.";
RL   Chromosoma 98, 323-329 (1989).
XX
DR   GenBank; X52706; Positions       1     422.
XX
SQ   Sequence 422 BP; 105 A; 56 C; 141 G; 120 T; 0 others;
     tagatattaa acctatcccg ctctctagat accccttagc acgtaaagga atattatttg        60
     gggatccagc catggagaag agtttagaca ctaggataag ataaggaaca cacccattct       120
     aaagaaatca cattaggatt ctctttttaa gctgtttctt aaaacactag tgcttaggaa       180
     atctattgga ggcagaagca gtcaagggta gcctagggtt agggttaggc ttagggttag       240
     gcttagggta cggcttaggg tacgggttcg gggaggggtt cgggtacggc gtagggtatg       300
     ggttagggtt agggttaggg ttagtgttag ggttagggct cggtttaggg tacggtttag       360
     gattagggta cgtgttaggt ttagggtagg ggttagggtt agggtacgcg ttagggttag       420
     gg                                                                      422
//
ID   OSSAT1      repbase; DNA   ; MAM   ; 698 BP.
XX
AC   X03117;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Sheep satellite II DNA repeat unit.
XX
KW   SAT; Satellite; Simple Repeat; direct repeat; OSSAT1; Inverted repeat;
KW   Repetitive sequence; satellite DNA.
XX
OS   Ovis sp.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Caprinae; Ovis.
XX
RN   [1]
RP   1-698
RA   Buckland A.R.;
RT   "Sequence and evolution of related bovine and caprine satellite
RT   DNAs.";
RL   J. Mol. Biol 186, 25-30 (1985).
XX
DR   GenBank; X03117; Positions       1     698.
XX
SQ   Sequence 698 BP; 116 A; 239 C; 227 G; 116 T; 0 others;
     actccctggg cgcccagaac ctgcctcaca cacgtagctt ccctagcgct ctcctcccca        60
     gcagagacgt gtgcagctgg ttggggcctg cctgcgtgcc tgggctccct cccagagacc       120
     cagctcaggg caagcagccc ctgagccaag acctgcagga ggcgcagagc ccacccacct       180
     ggaagccgag tgaacggctg gcggggaggc gagcctcctc gagggaagaa gaggcagccc       240
     agcctcgttt ggctcaagcc ctacttggct ggagccgagt gcgcctccag gacggagagc       300
     tccagctctg ctcagaggcc cgatctggca gagttgctgg agcgaggctg ctctgccctg       360
     ggcgagcctt gcccagactt gcctcacagc taggcttcct tcccaggaag gagcaggctg       420
     agcgaggctg ggggacgcca ctggcgcctt cctcgcctca gctccgctcc tgccttgcct       480
     ttgcacctag gccccaggcg tccttgggga gggcttaggg gacgtgtctt gcacactgcc       540
     aagggctcca gcaggaagag ctctgtgtga gcgaaggaaa gggctagtgc agggctcctc       600
     cagccgttgc ttggccgccc agactcagcg ccgctcagag tgcaccaggc tcctagggtc       660
     cctggttggg gtctgcagcc ccacactccc ggaggctg                               698
//
ID   RTREP1      repbase; DNA   ; MAM   ; 991 BP.
XX
AC   X77013;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Repetitive DNA sequence; tandem repeat.
XX
KW   RTREP1; Tandem repetitive sequence.
XX
OS   Rangifer tarandus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Cervidae;
OC   Odocoileinae; Rangifer.
XX
RN   [1]
RP   1-991
RA   Lee C., Ritchie B.D., Lin C.C.;
RT   "A tandemly repetitive, centromeric DNA sequence from the Canadian
RT   woodland caribou (Rangifer tarandus caribou): its conservation and
RT   evolution in several deer species.";
RL   Chromosome Res 2(4), 293-306 (1994).
XX
RN   [2]
RP   1-991
RA   Lee C.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (04-JAN-1994). C. Lee,
RL   University of Alberta, 6-59 Heritage Medical Research Building,
RL   Edmonton, Alberta, T6G 2S2, CANADA.
XX
DR   GenBank; X77013; Positions       1     991.
XX
SQ   Sequence 991 BP; 243 A; 297 C; 239 G; 204 T; 8 others;
     ctgcagtgca tgcagagcta ttccgtgatc ccattcaaac aagtcaggan cttcgacttg        60
     cttaatggat ctcgagacag tccccaagaa cactgtcacc agtctagacg gaccctgagg       120
     tcaccccagc aacgcaaagc agctccatgt gccccaaatc aactcgagat gaggcccgat       180
     tcccctgcat tgactccaga gccattcccc gttccccatt caacacgacc ggtggctcga       240
     cttccttcag gcaactccag agatgccccg agaacactgt cccaaggtct agaggaacac       300
     caacttcagc acagcaactc gaggaatgct ccgtgtaccc caaatcgtct cgagatgcga       360
     gctgattccc tggcttaggc tcaagacgta tgccaacttc cagaagcanc tcaggaggag       420
     ggttctctca gcaataggta tgtgggaggg accccgagtt tgctgcctca aggggaatat       480
     acagcgagaa gccctaactt gaaaggaggn cggatttcct tgcagtggct tgaatacagg       540
     ctcgtctttc atctcacaac atgaagggat ctctgaatcc cctgtggaga ccttagagaa       600
     agccctaggt cnctgcctca ttttgnggga atgcctcaca tccncgctga cacctcgaga       660
     ggcacgcgga ggttcattgc ttnaaaaggt gacgatgcct gactcctctt gaatactgat       720
     aggaatcccc aaaatccctg tggctactgg aaagggtcct tgggtgccct gcctcacctc       780
     gagaagcgtc cctttggccc tgccaagcct cgaagagatt cctgaggtgt ccctccgtta       840
     ctagacagga gtcctgacgt cactgaagaa actcgtgttt tgaagggcca tccccgcgta       900
     agtcgagaac ataccccagg tccccgccgc aactcgagaa aaaccatgag acttccccct       960
     agnggcgaga tgaggcccca ttcccctgca g                                      991
//
ID   KORV_I      repbase; DNA   ; MAM   ; 7424 BP.
XX
AC   AF151794;
XX
DT   30-OCT-2001 (Rel. 6.09, Created)
DT   30-OCT-2001 (Rel. 6.09, Last updated, Version 1)
XX
DE   Phascolarctos cinereus retrovirus KoRV - internal sequence.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; KORV_I; KORV_LTR.
XX
OS   Phascolarctos cinereus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos.
XX
RN   [1]
RA   Hanger J.J., Bromham D.L., McKee J.J., O'Brien M.T.,
RA   Robinson F.W.;
RT   "The nucleotide sequence of koala (Phascolarctos cinereus) retrovirus:
RT   a novel type C endogenous virus related to gibbon ape leukemia
RT   virus.";
RL   J. Virol 74(9), 4264-4272 (2000).
XX
DR   GenBank; AF151794; Positions     505    7928.
XX
SQ   Sequence 7424 BP; 1815 A; 2104 C; 1918 G; 1587 T; 0 others;
     tttgggggct cgtccgggat ctgagattcc cacccaagga ccgccgaacc accgacggga        60
     ggtaagctgg ccagcgatcg ctctatgttc tctctgtgtc tgactccgaa aactctgact       120
     gtctattcgg tgtgcgcgca tttttggttt attccgggtt aatcgatcta agatcgaggc       180
     gtgagtagcg gacagacgtg ttcgggggct caccgcccgg caatcctggg agacgtccca       240
     ggatcagggg aggaccaggg acgcctggtg gatcccacgg caagggataa ttctcctctg       300
     atctcacagt tgcactgtct tgagagacat accctacctt ctgactcttt ttcctgtctt       360
     tttaatatac gtctacgccg ccatataatt tttttccttt ttatttcaat aataatcatt       420
     atctgggtcg taattccact cttcgggacc cccagaatgg gacagggtga gtcgacccct       480
     ctctctctta cactagatca ctggaaagac gtgaagacaa gggctcacaa tctttccgtg       540
     gagataagaa agggaaagtg gcaaaccttc tgttcctccg agtggcccac gttcgaagtg       600
     ggatggccac cggaggggac ttttaatcct tctattattt ctgcagtcaa aaggattgtc       660
     ttccaggaga ctggaggaca cccggaccag gttccctaca tcatagtttg gcaggacctc       720
     tccaacagcc cccccccatg ggtgccaccc ttagccaaga tcgccgttgc ctctggtcaa       780
     gataacgggc gaaagtcggc gggggggagg ccgtccgctc cttcccggct ccccatctac       840
     ccggagacgg acagcctgtt cctcctctca gaacccccgc cctatccaac gtcccctcca       900
     cctcccccag cccctcacgc ggccagacca gcgccaggcc taatggctga gggactcggc       960
     tctgagggac cggccgctgg aactaggagt cgccgtcccc gcagtcctac gggtgacact      1020
     ggtcctgact ccactgtggc cctgcccctc cgggccgtgg gacccccggc cgaaccaaac      1080
     ggcttagtcc ccttgcaata ttggcctttc tcctcagcag atctctataa ttggaaatct      1140
     aatcatcctt ctttttccga gaatcctaca ggacttacgg gactccttga gtccctcatg      1200
     ttttcccacc agcctacttg ggacgattgc cagcagctcc tgcaagtcct ctttaccacc      1260
     gaggaaagag aaaggattct tttggaggct cgcaaaaacg tccttggagt taacggggcc      1320
     cctacacaac tcgagaacct cattaatgag gccttccccc ttaatcgacc tcagtgggat      1380
     cacaacacgg ctgaaggtag ggagcgtctc ctggtctacc gccggactct agtggcgggt      1440
     ctcaaagggg cagcaaggcg ccccaccaat ttggccaagg taagagaagt cttgcaggga      1500
     ccaacagaac ccccgtccgt ttttctagaa cgtctaatgg aggcttatag gagatatacc      1560
     ccatttgatc cctcttctga gggacaaaag gcggcggtgg ccatgtcctt tatcgggcag      1620
     tctgccccgg atattaaaaa gaaattacaa aggctggaag gactccagga ccattccttg      1680
     caggatctca taaaggaggc agagaaggta tatcataaga gagagacaga ggaagaaaag      1740
     caagaaagag agaaaaagga gacagaggaa agagagagac ggcgtgacag gcgccaggag      1800
     aaaaacttga ccaaaatctt ggccgcggta gtaagtgaga aagggttcag agggagacag      1860
     gcagggaatc tgagcaacag ggcaatgagg gcacctaggg aaggaagacc gcctctggac      1920
     aaagatcagt gcgcatactg taaagaaagg ggccattggg caagggagtg cccccggaag      1980
     aagaacgcca gggaaaccaa tgtcctgacc ctgggtgact aggggagtcg gggttcggac      2040
     cccctccccg agcccagggt aacgttaact gtggagggga tccccactga gtttttggtt      2100
     gataccgggg ccgaacattc agtattgacc aagcctatgg gaaagatggg atccaaacgg      2160
     acagtcgtgg ctggggcgac gggcagcaaa gtttaccctt ggaccaccaa gagacttttg      2220
     aaaattggac aaaagcaagt gacccactca ttcttggtca tacccgaatg ccctgctccc      2280
     ctgttaggca gggacctcct caccaagcta aaagctcaaa tccagttttc cacagagggc      2340
     ccacaggtaa catgggaaga ccgccccgcc atgtgtttag tcctgaactt ggaggaggaa      2400
     taccgattac acgaaaagcc ggtccctcct tctatcgacc cgtcatggct ccaactcttt      2460
     cccatggttt gggccgagaa ggcaggtatg ggactggcca atcaagtccc accagtggta      2520
     gtggaactga agtcagatgc ctcaccagtg gctgttcgac agtacccaat gagcaaggaa      2580
     gcccgggagg gtatcaggcc ccacatccaa agattcttgg atttggggat tctggtacct      2640
     tgccagtcgc cctggaacac ccctttgtta cctgtaaaaa aacctggaac caatgactat      2700
     cggccagtcc aagatttgag ggaggtcaac aaaagagtac aggacattca tcccacagtc      2760
     ccgaacccct ataacctact cagttccctc ccgcccagcc acacctggta ttcagtttta      2820
     gacctcaaag atgctttctt ttgcctcaag ctacacccca acagccagcc attgttcgcg      2880
     tttgaatgga gagatccaga aaaaggcaat actggccagc taacctggac tcggctaccg      2940
     caaggattca agaactctcc caccctcttc gatgaggccc tccaccggga tctggcatcc      3000
     ttcagggctc tcaaccccca ggtagtgatg ctccaatatg ttgatgacct cctggtagcg      3060
     gccccaacgt accgagactg caaagaaggg acacgaaggc tcttacagga actaagtaag      3120
     ttgggatacc gagtgtcggc caaaaaggcc cagctttgcc gggaggaagt tacgtatctc      3180
     gggtatttgc taaaaggggg gaagagatgg ctgaccccag cccgaaaggc cactgtaatg      3240
     aagatcccca cccctacaac ccccagacaa gtccgtgagt ttttgggcac tgctggattc      3300
     tgtaggctct ggatccctgg tttcgcttcc ctggctgcac ccctgtaccc cctgacgaga      3360
     gaaaaggttc cctttacctg gactgaggcc caccaggaag cctttggccg tataaaagag      3420
     gccctgctat cggcccccgc cctggccctt ccggacctca ccaagccatt tgctctgtac      3480
     gtggatgaaa aagagggtgt tgcccggggg gtgcttactc aaaccctagg accatggcga      3540
     cgcccggtag cttacctgtc aaaaaaatta gatccggtgg ccagtgggtg gccaacttgc      3600
     ctaaaagcaa ttgcggccgt agcactcctt ctcaaggacg ctgataagtt aaccctagga      3660
     cagaacgtgt tggtgattgc acctcacaac ctggaaagca ttgtgagaca gccccccgac      3720
     cgatggatga caaatgccag gatgacccat taccaaagtc tgctgctgaa tgagagggtg      3780
     tcttttgcgc ccccggccat tctgaatcct gccaccctgc tccccgtaga gtcagacgac      3840
     accccaatac acatatgctc agaaatcctt gccgaggaga caggaacccg acctgatctg      3900
     agagatcagc cgttgcccgg ggtacccgct tggtatacgg atggcagcag tttcatcatg      3960
     gatggcaggc gacaagcagg tgctgccatt gtggacaaca agcggacggt gtgggcgagc      4020
     aacctgccag agggaacgtc agctcagaag gccgaactaa tcgccttgac acaagcatta      4080
     cgcttggccg aaggaaaaag catcaacatc tacacggaca gcaggtacgc ttttgccacc      4140
     gctcatgttc acggggctat atacaaacaa agaggactgc tcacttccgc tggaaaagac      4200
     atcaagaaca aagaggagat tttggccctg ctagaggcca tccatctccc taagcgagtc      4260
     gctatcatcc attgccccgg ccaccaaaga gggactgacc ctgtggctac cggaaaccga      4320
     aaggccgatg aggccgcgaa acaagctgcc cagtcaacca gaatactgac ggagaccacg      4380
     aaaaatcaag aacacttcga gcctacacgg gggaagatca agccgagaga gctcacccct      4440
     gaccagggaa gggaattcat tcaacggctg catcagctca cgcacttagg gccagacaag      4500
     cttctccagc ttgtaggtcg caccagtttt cacatcccga atctccagtc tgtagtgcgt      4560
     gaaatcacca gcaagtgtca ggtttgtgct gtaactaacg cagtcaccac ctaccgagag      4620
     cctggaagga ggcaaagggg agatcgaccc ggcgtgtatt gggaagtaga cttcacagag      4680
     gttaagcctg gccggtatgg taatagatat ttgctagtgt ttatcgatac attttctggg      4740
     tgggtagaag ctttccctac aaaaacagag acagccctga ccgtctgcaa gaagatactt      4800
     gaggaaatcc tacctcgttt cgggatccct aaggtactcg ggtccgacaa tggccctgcc      4860
     ttcgttgctc aggtaagcca ggggttggcc actcaactgg ggattgattg gaaattacat      4920
     tgtgcatata gaccccagag ctcaggtcag gtagaaagga tgaataggac aattaaagag      4980
     accttgacaa aattggcctt agagaccggt ggaaaagact gggtgaccct cctccctttg      5040
     gcgctactta gggcccggaa tacccctggc cagtttggcc tgactcctta tgagattctt      5100
     catggggggc cgccccctgt acttgcgtct ggggaagtcg tgggttctaa tggtgatttt      5160
     tttcccgttc tatttaccca cttgaaggct ttagaggttg tgaggactca gatctgggac      5220
     cagataaaag aagcctacag gcctggtact gtggccattc cccacccgtt ccaggtcggt      5280
     gaccgagtgc tggttagacg tcatcggtcc ggcagccttg agcctcggtg gaaaggccca      5340
     tacctggtgc tactgaccac cccgaccgcg gtgaaggttg acggtattgc tgcctgggtc      5400
     catgcttctc atctcaaacc cgcgccacct ggggcacccg atgagtcctg ggaactggaa      5460
     aagactgatc atcctcttaa gttgcgtgtt cggcggcgcc gaaatgaatc aacagcataa      5520
     caaccctcac caacccatga ctctcacctg gcaggtactg tcccagacgg gaagtgtcgt      5580
     ttgggaaaag aaagcagtcg agccaccctg gacgtggtgg ccctctcttg agcctgatgt      5640
     gtgcgcgctg gtagccggtc tcgagtcctg ggacatcccg gaactcactg catcggcctc      5700
     tcaacaggcc aggccccctg attcaaacta tgaacatgct tataatcaga tcacttgggg      5760
     aaccctggga tgtagctatc cccgggccag aacaagaatt gctaggtccc agttctacgt      5820
     gtgcccccgg gatggccgtt ccctgtccga ggcccggagg tgcggaggac ttgaatcttt      5880
     gtactgtaaa gagtggggtt gtgagaccgc gggaaccgcc tactggcaac cccggtcctc      5940
     gtgggacctt ataactgtag gccagggtca ccctacaggg acatgcgagc gcaccggttg      6000
     gtgcaaccca ctcaagatag agttcaccga gcctggcaaa cggttccgaa actggctaca      6060
     ggggcgaacc tggggtctaa ggttctatgt gactggacac ccaggcgtgc agttgaccat      6120
     acgactagtg atcacaagtc ccccaccggt agtagtgggc cccgatcctg tcctcgcaga      6180
     acaaggacct cccagaaaaa ttcccttcct ccccagagtg ccggttccta ccctatcacc      6240
     cccagcgtcc cctatcccca cggtacaggc tagccccccg gcccctagta ctccatctcc      6300
     caccacgggc gaccggctct ttggcctcgt acaaggggcc tttctggcct tgaatgccac      6360
     caacccggag gccacggagt cttgctggct ctgtctagcc ctcggccctc cttattacga      6420
     aggaatcgca actccagggc aagtcactta tgcctccaca gattcccaat gtcgctgggg      6480
     aggaaaaggg aagctcaccc tcactgaagt ctctggactc gggttatgta tagggaaagt      6540
     acctcctact caccaacatc tctgcaacct gactataccc ttaaacgcct cacatactca      6600
     caagtacctc ctcccctcca accgcagctg gtgggcttgt aattctggcc tcaccccctg      6660
     cctctctaca tcagtcttca accagtctaa cgatttctgt atccagatcc agcttgtccc      6720
     tcgcatctac tatcacccag acggtacctt gctacaggcc tatgagtccc cccactctag      6780
     aaacaagaga gagcctgtct cactcaccct ggctgtcctt ctcggattag gggtcgcagc      6840
     aggtataggt accggctcga ccgccctaat aaaagggccc atagacctcc aacaaggttt      6900
     gactagcctc cagattgcca tggatacaga ccttagggcc cttcaagact ccataagtaa      6960
     actagaggat tccttaacct ccctgtctga agtagtgctc cagaatagga gaggccttga      7020
     tctgctattt ttgaaggaag ggggcctttg tgcagcccta aaagaggaat gctgtttcta      7080
     tgttgaccac tcaggcgcgg tgcgagactc catgaggaga ctcaaggaaa ggttagataa      7140
     gaggcagtta gagcaccaaa agaatttaag ttggtacgag ggatggttca accgttcccc      7200
     ctggcttact actttactgt ctgcccttgc tggtcccctg ctactcctcc ttctgttact      7260
     caccctcggg ccttgtgtca tcaataagtt agtgcaattc atcaatgata gggttagtgc      7320
     agtaaggatt ctggttctca ggcacaagta ccagacccta gacaacgagg ataaccttta      7380
     attctgctct atgattagag ctaccctcaa agaaaatggg ggaa                       7424
//
ID   CHR-2       repbase; DNA   ; MAM   ; 321 BP.
XX
AC   AB005034;
XX
DT   29-MAY-1998 (Rel. 3.04, Created)
DT   29-MAY-1998 (Rel. 3.04, Last updated, Version 1)
XX
DE   Physeter macrocephalus DNA for SINE retroposon CHR-2.
XX
KW   SINE; Interspersed Repeat; CHR-2.
XX
OS   Physeter catodon
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Cetacea; Odontoceti; Physeteridae;
OC   Physeter.
XX
RN   [1]
RP   1-321
RA   Okada N.;
RT   "Direct submission.";
RL   DDBJ/EMBL/GenBank (1997). Norihiro Okada, Tokyo Institute of
RL   Technology, Faculty of Bioscience and Biotechnology; 4259
RL   Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226, Japan
RL   (E-mail:nokada@bio.titech.ac.jp, Tel:+81-45-923-1136,
RL   Fax:+81-45-923-1136).
XX
RN   [2]
RP   1-109
RA   Shimamura M., Yasue H., Abe H., Kishiro T., Goto M., Munechika I.,
RA   Okada N.;
RT   "Molecular evidence from retroposons that whales form a clade within
RT   even-toed ungulates.";
RL   Nature 388, 666-670 (1997).
XX
DR   GenBank; AB005034; Positions       1     321.
XX
SQ   Sequence 321 BP; 79 A; 112 C; 87 G; 39 T; 4 others;
     gggcttccct ggtggcgcag tggttaagaa tctgcctgcc aatgcagggg acacgggttc        60
     gagccctggt ccgggaagat cccacatgcc gcggagcaac taagcccntg cgccacaact       120
     actgagcctg cgctctagag cccgcgagcc acaactactg agcccgcgtg ccacaactac       180
     tgaagcccac gtgcctagag cctgtgctcc gcaacaagag aagccaccgc aatgagaagc       240
     ccgngcaccg caacgaagag tagcccccnc ttgccgcaac tagagaaagc ccgcgcncag       300
     caacgaagac ccaacgcagc c                                                 321
//
ID   MRSAT1      repbase; DNA   ; MAM   ; 50 BP.
XX
AC   M24343;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Wallaroo (M.rufus) satellite repeat DNA.
XX
KW   SAT; Satellite; Simple Repeat; MRSAT1; Satellite repetitive element.
XX
OS   Macropus rufus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Metatheria; Diprotodontia; Macropodidae; Macropus.
XX
RN   [1]
RP   1-50
RA   Peacock J.W., Dennis S.E., Elizur A., Calaby H.J.;
RT   "Repeated DNA sequences and kangaroo phylogeny.";
RL   Aust. J. Biol. Sci 34, 325-340 (1981).
XX
DR   GenBank; M24343; Positions       1      50.
XX
SQ   Sequence 50 BP; 12 A; 22 C; 9 G; 7 T; 0 others;
     cgacctacct accgaccgac cgaccgacgg atctaccgac gtacctacct                   50
//
ID   BCS         repbase; DNA   ; MAM   ; 299 BP.
XX
AC   X51356;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   5' truncated BCS repeat region.
XX
KW   BCS; BTBCS; Repetitive element; transfer RNA; transfer RNA-Ser.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-299
RA   Chee M.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (05-JAN-1990). Chee M., MRC
RL   Laboratory of Molecular Biology, Hills Road, Cambridge CB2.
XX
RN   [2]
RP   1-299
RA   Chee S.M., Rizos H., Henderson R.B., Baker R., Stewart S.T.;
RT   "Subfamilies of serine tRNA genes in the bovine genome.";
RL   Mol. Gen. Genet 231(1), 106-112 (1991).
XX
DR   GenBank; X51356; Positions       7     305.
XX
SQ   Sequence 299 BP; 70 A; 92 C; 68 G; 69 T; 0 others;
     ccatcagaag ctgacagcag gaagctggtc tctcagaatg tcttctactt gctgctgctg        60
     ttaagtcgct tcagtcgtgt ccgactctgt gcgaccccat aaacggcagc ccaccaggct       120
     tccccatccc tgggattctc caggcaagaa cactggagtg ggttgccatt tccttcacca       180
     atgcatgaaa gtgaaaagtg aaagtgaact cgctcagatc agatcagatc agtcgctcag       240
     tcgcgtccga ctctttgcga ccccatgaat cgcagcacgc caggccttcc tatccatca        299
//
ID   L1MA10      repbase; DNA   ; MAM   ; 1069 BP.
XX
AC   .
XX
DT   20-FEB-1997 (Rel. 2.01, Created)
DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MA10) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1MA10; L1MA10 subfamily; Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
CC   [1] (Consensus)
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MB3
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 17%.
XX
SQ   Sequence 1069 BP; 409 A; 155 C; 205 G; 272 T; 28 others;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     attccactta tatgaggtat ctaaaatagt caaactcata gaagcagaga gtagaatggt       720
     ggttgccagg ggctgggggr agggggaaat ggggagttgc tgttcaatgg gtataaagtt       780
     tcagttatgc aagatgaata agttctagag atctgctgta caacattgtg cctatagtta       840
     ataatactgg attgtacact taaaawttgt taaaagrgta gatctcatgt taagtgttct       900
     tatcgcacaa caaaaaaatg gggaactttt ggrrgtgatg gatatgttca ttatcttgat       960
     tgtggtgatg gtwtcacggg tgtntacata tgtcaaaact catcaaattg tacacwttaa      1020
     atatatgcag tttttagtgt ataattatac ctcaacaaag ctgttttaa                  1069
//
ID   MER90       repbase; DNA   ; MAM   ; 615 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   Long terminal repeat from endogenous retrovirus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR; MER90;
KW   retroelement.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-615
RA   Smit A.F.;
RT   "MER90..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Putative LTR of retrovirus-like element. 4 bp duplication site.
CC   In some elements the 40 bp tandem repeat from 29-109 occurs only once.
XX
SQ   Sequence 615 BP; 170 A; 181 C; 114 G; 147 T; 3 others;
     tgagaaagag aaaagcagcc cctgacatct gagagctggc ctggtaccnw cagctaggcc        60
     ttggtgttgc tgggagctgg cctggcactc acagctaggc cttggtgttc tcctgttgaa       120
     cataaacaat ttcacagaat atcaacatca gacaaggcca ctctgtgacc atgatggatc       180
     gagacaaaaa caagaccact ccgtaatcat gtctgaacac agacaaaaac atgaacattg       240
     tccaagccac aaaaatgacc aagcatcccc ctctcccggc taatatgagt gactgctgct       300
     tctttaccaa ttacagcttt agcctcgctc tagtcttccc tccttctaga taagatttat       360
     taagataccc aatcacagaa ttactcccgc ttcctgacag catccaatcc agagcaaagc       420
     ttcgcttcct taaaccctcc cccaaatcac ctaacacaag cccaaatcct ataataagtc       480
     ctttctaaca tcctcttact gagacgcccc gtggttcccc atggtgtgcg ttctccctcg       540
     ctgcarcgag caataaaccc aacttgttca accacaggtg tgttcctggt ggtctttggc       600
     tggagggcac tgaca                                                        615
//
ID   ECE1LTR     repbase; DNA   ; MAM   ; 505 BP.
XX
AC   X51929;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   U3 repeat region.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; ECE1LTR; FSECE1;
KW   Sndonuclease; glycoprotein; Long terminal repeat;
KW   retrotransposable element; reverse transcriptase;
KW   transmembrane protein.
XX
OS   Felis silvestris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Felidae; Felis.
XX
RN   [1]
RP   1-505
RA   Moehring R.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (21-FEB-1990). Moehring R.,
RL   Dept of Genetics, Central Institute of Molecular Biology, Academy of
RL   Science GDR, 1115 Berlin-Buch, Robert Raessle str 10, G D R.
XX
RN   [2]
RP   1-505
RA   Moehring R., Drescher B., Riedel H., Bauer D., Rohde K., Beyer W.,
RA   Rosenthal S.;
RT   "The exogenous RD-114 and the related endogenous proviral element ECE1
RT   of domestic cat differ in their env genes.";
RL   Arch. Virol (1990)In press.
XX
DR   GenBank; X51929; Positions    5228    5732.
XX
SQ   Sequence 505 BP; 130 A; 158 C; 100 G; 117 T; 0 others;
     tgagagaccc ctggcttagc ttaataaaac acccccaccc tatcttcggc tttgtaaacg        60
     cctcacttgc agagcttgta cttccactat taacaagcag gatatctgcg gttagacagt       120
     cgggaccccg ggagagctgt acaggttgct acataaataa ccgctttgct ctcgcttctg       180
     taaccttctt acgcgcccaa ccctagccgt tcgcaacccc gggctccaag ttgcatcagc       240
     caaaggaaac ttcatttccc aagcttcccc gggacgaaat tacccacaac cctaaccacc       300
     accgagcaga gagcctacca ccagcctgta tgcaaatgta actcaaaatg gtataaaaga       360
     cctgtaaccc cgtttatcgg ctctcccgct ttctaacact gggagccctg gtgcaccagt       420
     aaagactctc tgccgaagtc ggagtgccgt gtggttcttt gcgccaactc tcattccata       480
     aggcctagga gcataattcc taaca                                             505
//
ID   MLT1G       repbase; DNA   ; MAM   ; 512 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat (MLT1g
DE   subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
KW   Long terminal repeat of retrovirus-like element; MLT1G; MaLR family.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
RN   [2]
RA   Smit A.F.;
RT   "MLT1G..";
RL   Direct Submission to Repbase Update (1995).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 512 BP; 124 A; 127 C; 121 G; 119 T; 21 others;
     tgtggcggat tttaaaaatg gccacaaatt ctttgacact cttcccatcg aggagtgggg        60
     tccgtntcct ctccccttga atctgggtgg gctctgtgac tgcttcgacc aatagaatrc       120
     ggtggaagtg atgctrtgtg acttctgags ccaggtyata aaarrcattg cagcttcctg       180
     cttgctggaa ckctcacact tggagtcctg agccaccacg taagaagttc arctrccccg       240
     aggccaccat gctgtgagga agcccaagct astccacana gagaaaccga gccatcttgr       300
     aagcggatcc tccagcccca gtyaagyctt cagatgactg cagcyccggc tggcgtcttg       360
     actgcgccga taccacgtgg gacagagawg aactrcccag ctaagcccag cccaaattgc       420
     tgacctatag tattgrgaac gaataaatgr ttattgtttt aagccactaa gttttggggt       480
     ggtttgttac gcagcartag ataactgaaa ca                                     512
//
ID   D_CH        repbase; DNA   ; MAM   ; 236 BP.
XX
AC   M57436;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Goat D repeat.
XX
KW   CHD; D repeat; D_CH.
XX
OS   Capra hircus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Caprinae; Capra.
XX
RN   [1]
RP   1-236
RA   Li Q., Zhou B., Powers A.P., Enver T., Stamatoyannopoulos G.;
RT   "Primary structure of the goat beta-globin locus control region.";
RL   Genomics 9, 488-499 (1991).
XX
RN   [2]
RA   Li Q., Zhou B., Powers A.P., Enver T., Stamatoyannopoulos G.;
RT   "Beta globin locus activation region: Conservation of organization,
RT   structure and function.";
RL   Proc. Natl. Acad. Sci. U.S.A 87, 8207-8211 (1990).
XX
DR   GenBank; M57436; Positions    7164    6929.
XX
SQ   Sequence 236 BP; 79 A; 59 C; 53 G; 45 T; 0 others;
     tacttccatg ccactgagca attaagcccg tgggccacaa ctgctgagcc taagcaccac        60
     agctgctgaa gtctgtgtac cctggagtcc atgctccaca gccagagaaa tcacagtgag       120
     aggcctaagc accacagctg gaaagtagcc ttgcttgccg ctactagaga aagtctacat       180
     gcatcagtga aggactagga cagccaaaat taaataaata aaataaaatg aagatg           236
//
ID   L1ME_ORF2   repbase; DNA   ; MAM   ; 3285 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   Primate L1ME LINE1 repetitive element - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1ME subfamily;
KW   L1ME_ORF2; LINE1.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-328
RA   Smit A.F.;
RT   "L1ME_ORF2..";
RL   Direct Submission to Repbase Update (1997).
XX
RN   [2]
RP   329-1639
RA   Jurka J.;
RT   "L1ME_ORF2..";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   L1ME_ORF2 is a consensus of the ORF2 region of the ancient LINE1
CC   elements with L1ME subfamily 3' UTRs.
XX
SQ   Sequence 3285 BP; 1507 A; 533 C; 470 G; 717 T; 58 others;
     atggcagacn taaancctaa catatcaatr mttacattaa atgtaaatgg attaaacact        60
     ccaatcaaaa gatacagatt gtcagagtgg ataaaaaaac aacacccaac aatatacwgc       120
     ctatmagaga cacaccttaa atataaagac acasataggt tgaaartaaa agaatggaaa       180
     aagatatacc atgcaaatwg taaccaagag aaagccggag tggctatatt aatatcagac       240
     aaagtagact ttaaaccaag aaatattact agagataaag agggacattt cataatgata       300
     aaagggtcaa tctatcagaa agacataaca atcctaaata tatatgcacc caanatcaga       360
     gcaccaaaat acataaagca aatactaata gaactgaaaa gagaaataga caaatccaca       420
     ataatagttg gagacttcaa taccccactg tcagtaattg atagatcaac tagacagaaa       480
     atcaataagg atatagaaga cttgaacaac actatcaacc aactggacct aattgacata       540
     ttatagaaca ctccacccaa caacagcaga atacacattc ttytcaagtg cacatggaac       600
     attcaccaag atagaccata tgctrggcca taaaacaagt ctcaataaat ttaaaaaaat       660
     tgaaatyata caaagtatgt tctctgacca caatggaata aaawtagaaa tcaataacaa       720
     aaagatactc tggaaaatnc acaaatactt ggaaattaaa caacatactt ctaaataact       780
     catgggtcaa agaagaaatc aaaagagaaa ttaaaaaata ttttgaaata aatgaaaatg       840
     aaaayacaac atatcaaaaa tttatgggat gcagctaaag cagtgcttag agggaaattt       900
     atagcattaa atgcctatat taaaaaagaa gaaagatctc aaatcaataa cctaagtttc       960
     caccttaaga aactagaaaa agaagagcaa attaaaccca aagtaagcag aagaaaggaa      1020
     ataataaaga ttagagcaga aataaatgaa atagaaaaca gaaaaacaat agaaaaaatc      1080
     aataaaacca aaagttggtt ctttgaaaag ataaaattga caaaccttta gctagactaa      1140
     aaaaaagaga gaagacacaa attactaata natcagaaat gaaagaggag ayattactac      1200
     agatyctaca gaaataaaaa ggataataag agaatactat gaacaacttt atgccaataa      1260
     atttgataac ctagatgaaa tggacaaatt ccttgaaaca cacaaactac caaaactgac      1320
     tcaagaagaa atagaaaatc tgaatagacc tataactatt aaagaaattg aatcagtaat      1380
     taaaaacctt ccaacaaaga aaagtccagg accagatggc ttcactggtg aattctacca      1440
     aacatttaaa gaattaatac caatcctact caaactcttc caaaaaatag aagaggaggg      1500
     aatacttcct aactcattct atgaggccag cattaccctg ataccaaaac cagacaaaga      1560
     cattacaaga aaagaaaact acagaccaat atccctgatg aacatagatg caaaaatcct      1620
     caacaaaata ctagcaaanc aaatccaaca gcacatgaaa aggattatac accatgacca      1680
     agtgggattt atcccaggga tgcaaggctg gtttaacata yaaaaatcaa ycaatgtgat      1740
     wcactacaty aacagrntaa aggagaaaaa tcatatgatc atctcaatag atgcagaaaa      1800
     agcatttgac aaaattcaac atccattcat gataaaaact ctcaataaac taggaataga      1860
     aaggaacttc ctcaanataa taaaggnmat atatgacaaa cctacagcta acatcatact      1920
     taatggtgaa aaactgaaag cwtttcccct aagatcagga anaagacaag gatgtctact      1980
     ctcaccattt ctattcaaca ttgtactgga agtcctagcc agtgcaataa ggcaagagaa      2040
     agaaataaaa ggcatacaga ttggaaagga agaagtaaaa ctgtctttat tkgcagatga      2100
     catgattttn tatatagaaa atyctaaaga atccacaaaa aaacwactag aactaataaa      2160
     taaatttagc aagntcncag gatacaaggt caatatacaa aaatcaattg tatttctata      2220
     tactagcaac gaacaatntg aaaatgaaat taagaaaaca atwccattta caatagcatc      2280
     aaaaaaataa aatacttagg aataaattta acaaaataya trcaagactt gtacgctgaa      2340
     aactacaaaa cattgatgaa agaaattwaa gaagacctaa ataaatggag agatatacca      2400
     tgttcatgga ttggaagact caatattgtt aagatgkcaa tactccccaa attgatctat      2460
     agattcaata caatcccaat caaaatccca atggtttttt ttgtagaaat tgacaarctg      2520
     attctaaaat ttatatggaa atgcaaagga tccagaatag ccaaaacaat tttgagaaag      2580
     aagaacaaag ttggaggact cacattacct gatttcaaaa cttactayaa agctacagta      2640
     atcaagacag tgtggtattg gtataaggat agacatatag atcaatggaa cagaatagag      2700
     aacccagaaa tagacccaca catatatggt caaytaattt ttgacaaagg tgccaaggca      2760
     attcaatggg gaaagaatag tcttttcaac aaatggtgct ggaacaactg gatatccata      2820
     tgcaaaaaaa tgaasttmga cccctacctc acaccatata caaaaattaa ctcaaaatgg      2880
     atyatagacc taaatgtaaa anctaaaact ataaaactyt tagaagaaaa cataggagaa      2940
     aatcttcgtg accttgggyt aggcaawgat ttcttagata tgacacmaaa agcacaagca      3000
     acaaaaggaa aaattgataa attggacttc atcaaaatta aaaacttctg ctcttcaaaa      3060
     gacacyatca agaaaatgaa aagacaagcc acagactggg agaaaatatt tgcaaawcat      3120
     atatctgaca aaggacttgt atccagaata tataaagaac tcttacaact caataataaa      3180
     aagacaaata acccaattaa aaaatgggca aaggayttga acagacattt cwccagagaa      3240
     gatatacaaa tggccaataa gcacatgaaa agatgctcaa catca                      3285
//
ID   HERVL       repbase; DNA   ; MAM   ; 5654 BP.
XX
AC   .
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   07-MAY-1999 (Rel. 4.04, Last updated, Version 2)
XX
DE   Internal part of endogenous retroviral element HERV-L; a consensus
DE   sequence.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; HERVL;
KW   Internal part of endogenous retrovirus HERV-L; MLT2.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-5654
RA   Cordonnier A., Casella F.J., Heidmann T.;
RT   "Isolation of novel human endogenous retrovirus-like elements with
RT   foamy virus-related pol sequence..";
RL   J. Virol 69(9), 5890-5897 (1995).
XX
RN   [2]
RP   1-5654
RA   Heidmann T.;
RT   "Direct submission..";
RL   Direct Submission to EMBL/GenBank/DDBJ (26-JUN-1995). T. Heidmann,
RL   Inst. Gustave Roussy CNRS URA 147, 39 Rue Camille Desmoulins, F- 94805
RL   Villejuif, FRANCE.
XX
RN   [3]
RP   1-5654
RA   Kapitonov V.V., Jurka J.;
RT   "HERVL..";
RL   Direct Submission to Repbase Update (SEP-1998).
XX
CC   [3] (Consensus)
XX
CC   LTR's of HERV-L are listed in REPBASE as MLT2 sequences.
CC   HERV-L has a potential leucine tRNA primer-binding site [1].
CC   The HERV-L internal sequence shows some amino acid similarities to
CC   retroviral reverse transcriptase and integrase proteins. In addition,
CC   a region homologous to dUTPase proteins was found downstream from
CC   the integrase domain [1]. The amino acid sequence and phylogenetic
CC   analysis indicate [1] that the HERV-L pol gene is related to
CC   that of foamy retroviruses. HERV-L-related sequences are detected in
CC   several mammalian species. The consensus sequence has been
CC   derived [3] based on the eleven copies of HERV-L internal sequences
CC   flanked by MLT2A1 and MLT2A2 long terminal repeats. It represents
CC   the youngest subfamilies of HERV-L endogenous retroviruses that,
CC   presumably, were active in a common ancestor of apes and human
CC   (94% identity between individual copies and the consensus
CC   sequence) [3].
XX
SQ   Sequence 5654 BP; 1516 A; 1253 C; 1441 G; 1444 T; 0 others;
     gattttggta ccaggagtgg ttctagagga acagaatatt aaggatggag ttctttcgtt        60
     ggttttgggg tttctggagt tggctgctta atatgattag acccaaaaat gctaaggact       120
     ctacttctaa tagtatggag aacactgata gtccttggca tgaactgttt agagagttat       180
     gcaaaataaa tgcatttgac actcctgatt caccgctcat gagaggcaag gagtttagtg       240
     actctataca taataccttt gaccatatgt ggagaaccaa ggaacataat gaagctggtt       300
     ggttgctcct aagttcagtg gacaaagtga tgaaagaaaa tgatgaactc agggattctg       360
     tctcccggct tcagaagcag atactgagcc tcaaatctgc taagattgcc ctgagtgaga       420
     gtcttatctc ctgtagagaa agagctgaaa ttgtggaaaa acagacacaa gctcttatca       480
     tgcgagtggc tgacctgcaa tgaaaggtgc atgcacagcc tcgccaggtg tctactgtta       540
     aagtgagggc attgattgga aaagaatggg accctgcaac ttggaatggg gacgtgtggg       600
     aggaccctga tgaagctggg gacactgagt ttgtaaactc tgatgaacct tttttgccag       660
     aagaaacagc ttccccatcc ccagtagtgg caacatcccc tccccgaccc atgctgccat       720
     cagcctttcc acctttgtct gaggagataa accctgcgct gcctgaggca acagtgatgg       780
     cctcccctga ggcagttgcc aggcaagata atgttgattc tcctcaggag ccacccccaa       840
     cacccctgtt tgcttctaga cctataacta gactaaagtc ccggcgggcc cctagaggtg       900
     aggttgagag tgtgacccat gaggaggtgc gctacactcg aaaagaactg tttgagtttt       960
     ctaatttata taaacagaaa tctggagaac aggcatggga atggatatta agggtgtggg      1020
     ataatggtgg aaggaacata gagttggatc aggctgaatt tattgatttg ggcccactaa      1080
     gtagggactc tgcatttaat gttgcagctc agggagttaa aaaaggttct aatagtttat      1140
     ttgcttggtt agctgaaata tggattaaaa gatggcccac tgtgagcgag ctggaaatgc      1200
     ctgatctccc ttggtttaat gtagaggaag ggatccaaag gcttagggag attgggatgg      1260
     tggagtggat tagtcacttt agacctactc atcccagctg ggagggtcca gaagatatac      1320
     ccttgaccaa tgccttgcga aatagatttg tgagggcagc acctgcatct ttgaagagcc      1380
     ctgtaattgc tcttctctgt atgtcagatc taacggtggg aaccgcagtc actcaactac      1440
     aaaatttaaa tacaatggga ataattggat cccgaggtgg caggggccaa gtggcagcac      1500
     tcaaccgtca aaggcaaggt gggcatagct accgtaatgg acagcagagg caaagcggca      1560
     atcagaatag tctgactcgt gtagagctct ggcattggct aattaatcac ggtgttccta      1620
     gaagtgaaat tgataggaag cctactgcat tcctacttaa tttatacaag cagaaaactt      1680
     ctaggtcgaa tggacaaaag actaatttga attataaaaa cagagaatca tggcccctca      1740
     atcaatttcc agacttgagc cagtttacag acccagaacc ccttgaatga aggggaggcc      1800
     gggtcccctt gaggaaggac cccactacat tactgacaat ttatgcagtg aatctttctc      1860
     ccatccttcc ccaaggagac ctctggcctt ttaccagggt aactgtgcat tggggaaagg      1920
     gaaatgatca gacattttgg ggactactgg acactggctc tgagctgacg ttgattccag      1980
     gggacccaaa acgtcattgt ggtcctccag ttaaagtagg ggcttatgga ggtcaggtaa      2040
     ttaatggagt tttagctcag gtccgactta cagtgggtcc agtgggtccc cggactcatc      2100
     ctgtggtcat ttccccagtg ccagaatgca taattggcat agacatactt agcagctggc      2160
     agaaccccca cattggctcc ctgactggta gggtgagggc tattatggtg ggaaaggcca      2220
     aatggaagcc attagagctg cctctaccta gaaaaatagt aaatcaaaaa caatatcgca      2280
     tccctggagg gattgcagag attagtgcca ccatcaagga cttgaaagac gcaggggtgg      2340
     tgattcccac cacatccccg ttcaactctc ccatttggcc tgtgcagaag acagatggat      2400
     cttggagaat gacagtggat tatcgtaagc ttaaccaagt ggtgactcca attgcagctg      2460
     ctgtaccaga tgtggtttca ttgcttgagc aaattaacac atctcctggt acctggtatg      2520
     cagccattga cttggcaaat gcctttttct ccattcctgt ccataaggcc caccagaagc      2580
     aatttgcctt cagctggcaa ggccagcaat atacctttac tgtcctacct caggggtata      2640
     tcaactctcc ggctttgtgt cataatctta ttcggagaga ccttgatcgc ttttcgcttc      2700
     cgcaagatat cacactggtc cattacattg atgacattat gctgattgga tccagtgagc      2760
     aagaagtagc aaacacactg gacttattgg tgagacattt gcgtgccaga ggatgggaaa      2820
     taaatccgac taaaattcag ggaccttcta cctcagtaaa atttctaggg gtccagtggt      2880
     gtggggcctg tcgagatatt ccttctaagg tgaaggataa gttgctgcat ttggcccctc      2940
     ctacaaccaa gaaagaggca caacgcctag tgggcctatt tggattttgg aggcaacaca      3000
     ttcctcattt gggtgtgtta ctccggccca tttatcgagt gacccgaaag gctgccagtt      3060
     ttgagtgggg tccagaacag gagaaggctc tgcaacaggt ccaggctgct gtgcaagctg      3120
     ctctgccact tgggccatat gacccagcag atccaatggt gcttgaggtg tcagtggcag      3180
     atagggatgc tgtttggagc ctttggcagg cccccatagg tgaatcacag cggaggcctc      3240
     taggattttg gagcaaggcc ctgccatctt ctgcagataa ctactctcct tttgagagac      3300
     agctcttggc ctgttactgg gctttggtgg aaactgaacg tttgactatg ggtcatcaag      3360
     tcaccatgcg acctgaactg cctatcatga actgggtgct ttctgaccca tctagccata      3420
     aagtgggtca tgcacagcag cattccatca tcaaatggaa gtggtatata cgtgattggg      3480
     ctcgagcagg tcctgaaggc acaagtaagt tacatgagga agtggctcaa atgcccatgg      3540
     tctccactcc tgccaccctg ccttctctcc cccagcctgc accgatggcc tcatggggag      3600
     ttccctatga tcagttgaca gaggaagaga agactagggc ctggttcaca gatggttctg      3660
     cacgatatgc aggcaccacc cgaaagtgga cagctgcagc actacagccc ctttctagga      3720
     catccctgaa ggacagtggt gaagggaaat cttcccagtg ggcagaactt cgagcagtgc      3780
     acctggttgt gcactttgca tggaaggaga aatggccaga tgtgcgatta tatactgatt      3840
     catgggctgt agccaatggt ttggctggat ggtcagggac ttggaagaag catgattgga      3900
     aaattggtga caaagaaatt tggggaagag gtatgtggat ggacctctct gagtggtcaa      3960
     aaactgtgaa gatatttgta tcccatgtga gtgctcacca acgggtgacc tcagcggagg      4020
     aggattttaa taatcaagtg gataggatga cccattctgt ggacaccact cagcctcttt      4080
     ccccagccac ccctgtcatc gcccaatggg cccatgaaca aagtggccat ggtggcaggg      4140
     atggaggtta tgcatgggct cagcaacatg gacttccact caccaaggct gacctggcta      4200
     tggccactgc tgagtgccca atttgccagc agcagagacc aacactgagc cctcgatatg      4260
     gcaccattcc tcggggtgat cagccagcta cctggtggca ggttgattat attggacctc      4320
     ttccatcatg gaaagggcag aggtttgtcc tcactggaat agacacttac tccggatatg      4380
     ggtttgccta tcctgcacgc aatgcttctg ccaagactac catccgtgga ctcacggaat      4440
     gccttatcca ccgtcacggt attccacaca gcattgcctc tgaccaaggc actcacttta      4500
     cggctaaaga agtgtggcag tgggctcatg ctcatggaat tcactggtct taccatgttc      4560
     cccatcatcc tgaagcagct ggattgatag aacggtggaa tggccttttg aagtcacaat      4620
     tacaatgcca actaggtgac aatactttgc agggctgggg caaagttctc cagaaggccg      4680
     tgtatgctct gaatcagcgt ccaatatatg gtactgtttc tcccatagcc aggattcacg      4740
     ggtccaggaa tcaaggggtg gaagtggaag tggcaccact caccatcacc cctagtgatc      4800
     cactagcaaa atttttgctt cctgttcccg cgacattacg ttctgctggc ctagaggtct      4860
     tagttccaga gggaggaacg ctgccaccag gagacacaac aacgattcca ttaaactgga      4920
     agttaagatt gccacctgga cactttgggc tcctcctacc tttaagtcaa caggctaaga      4980
     agggagttac agtgttggct ggggtgattg acccagacta tcaagatgaa atcagtctac      5040
     tactccacaa cggaggtaag gaagagtacg catggaatac aggagatcca ttagggcgtc      5100
     tcttagtatt accatgccct gtgattaagg tcaatgggaa actacaacag cccaatccag      5160
     gcaggactac aaatgaccca gacccttcag gaatgaaggt ttgggtcact ccaccaggaa      5220
     aaaaaccacg acctgctgag gtgcttgctg aaggcaaagg gaatacagaa tgggtagtag      5280
     aagaaggtag tcatcaatac cagctacgac cacgtgacca gctgcagaaa cgaggactgt      5340
     aattgtcatg agtatttcct ccttcttttg ttaaaaacat gtttgtgcat gtatacactt      5400
     gtactaagaa aatatcttca ttttatttcc ttttcctttt atcatgtgac ataagattta      5460
     ttgacttcat atcagcattt aagtattgtt aactttatgt aatagtattt gggttgggga      5520
     ttggtgcgtt tccggttgta cgaaggatag ttgtattatg ttaggcgtaa ttatgacctt      5580
     attattgtct ttatttgaag attatgtatg atctcaggag atgtgtatgg gttcaagttg      5640
     acaaggggtg gact                                                        5654
//
ID   ERI-2       repbase; DNA   ; MAM   ; 220 BP.
XX
AC   AF195910; AF195911; AF195912; AF195913; AF195914; AF195915; AF195916;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Erinaceus dauricus SINE ERI-2 consensus sequence.
XX
KW   SINE; Interspersed Repeat; ERI-2; SINE retrotransposon.
XX
OS   Mesechinus dauuricus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Erinaceidae; Erinaceinae; Mesechinus.
XX
RN   [1]
RA   Borodulina R.O., Kramerov A.D.;
RT   "Short interspersed elements (SINEs) from insectivores. Two classes of
RT   mammalian SINEs distinguished by A-rich tail structure.";
RL   Mamm. Genome 12(10), 779-786 (2001).
XX
RN   [2]
RA   Kohany O., Jurka J.;
RT   "ERI-2 consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   Average similarity to consensus 86%.
XX
SQ   Sequence 220 BP; 49 A; 53 C; 48 G; 57 T; 13 others;
     gggaccrggt ggtggyrcac ctggttgagc acacatgtta caatgcacaa ggaccygggt        60
     tcgagccccc agtccctacc tgcaggggga aagctttatg agtggtgaag cagtgttgca       120
     ggtgtctctc tgtctctcwc cctmtcwccc ccttccctct tgatttctgg ctgtctctat       180
     cyaataaata aataaatwtw ttaaaaaatw aaratrctga                             220
//
ID   L1C_OC      repbase; DNA   ; MAM   ; 4374 BP.
XX
AC   M18818; X07786; X07787; X07788;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   07-FEB-2000 (Rel. 5.01, Last updated, Version 3)
XX
DE   Direct repeat L10c-4.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; Beta-globin; L1C_OC;
KW   delta-globin; epsilon-globin; gamma-globin; globin gene cluster;
KW   hemoglobin alpha-2 beta-2; pseudogene.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RP   1-4374
RA   Margot B.J., Demers W.G., Hardison C.R.;
RT   "Complete nucleotide sequence of the rabbit beta-like globin gene
RT   cluster. Analysis of intergenic sequences and comparison with the
RT   human beta-like globin gene cluster.";
RL   J. Mol. Biol 205(1), 15-40 (1989).
XX
DR   GenBank; M18818; Positions   33724   38097.
XX
SQ   Sequence 4374 BP; 1697 A; 837 C; 838 G; 1002 T; 0 others;
     gggaaaatgg cagggcaaaa ttacacttat caatagtcac actgaacgtt aatggcctga        60
     actgtccagt taaaagacat agattggctg attgggttaa ggaacaaaac ccatctattt       120
     gctgcttaca gaaacacatc tttccaacaa agatgcatcc agactgaatg tgaaaggctg       180
     gagaaagata ttccatgcca acagaaatga aaaaagagca ggcataacca tcttaatatc       240
     agacaaaata aactttagca caaaaactgt taagagagac aaagaggggc actacataat       300
     gattaaggga tgaattcaac agaaaaaata taacgattat caatgtatat gcacctaatt       360
     acagggcacc ggtttattta aaagatttgt taagagagtt aaagggagac ttagactcca       420
     atacaatagt actgggggac ttcaatactc cactctcaga aatagacaga tcacaggaca       480
     gaagactaca ggaaacagta cattcaaagg atactatagc ccagatggat ctgacacata       540
     tctacagaac ttttcatcct gcacttaaag aatttacatt cttctcagca gtacatggaa       600
     cctactctaa gattaaccac atactaggcc ataaagcaag tctcagcaca ttcaaaagaa       660
     ttagaatcat atgatgcagc ttctcagacc ataatagaat gaagtcggaa attagcaact       720
     caggaatccc tacagcatat gcaaacacat ggagagtgaa caacatgctc ctgaatgaac       780
     actaggtcat caaagaaatc aaaagagaaa tcaaaaactt tctggaagta aatgaggata       840
     acagcacaac ataccaaaat gtatgagatg cagcgaaagc agtgttaaga gaaaagttta       900
     tatcaatagg tgcctacatc aagaaattgg aaaggcacca aatagatgag ctttcaaatc       960
     acctcaagga tctagaaaaa ctgcagcaaa gcagacccaa atctagtagg agaagagaaa      1020
     taattaaaat cagagaagaa atcaacagga ttgaatccaa aaaaattacc aaaaatcagc      1080
     caaatgggga gctggttttt tgaaaaaata aacaaaattg ataccgcatt agctcaacta      1140
     actaaaagaa gaagagacca aatcaataaa atcagagatg aaataggaaa tgtaacagca      1200
     gacaccacag aaatgaaaag aatcatcaga aattactaca aggactgtat gccagcaaac      1260
     agggaaatct atcagaaatg catagattcc tggacacctg caacctacct acattgaacc      1320
     aggaagacat cgaaagccta aacaaaccca taactgaggc agaaattgaa acagtaataa      1380
     aggccctccc aacaaagaaa agcccaggac cagatggatt cactactgaa ttctaccaga      1440
     aatttaaaga agaactaact caattcttct caaactattc agaacaattg aaaaagaggg      1500
     aatcctccca aaatctttct atgaatccag catcacctta attcctaagc cggaaaaaga      1560
     tgcagcattg aaagaaaatt acagaacaat atacctaatg aacatagact caaaaattct      1620
     caataaaatt ctggccaacg gagtgcaaca acatttcaga aagatcattc acccagacca      1680
     agtgggatat aaccctggta tgcagggatg gttcaagtgt ttgcaaatgt gatacaccac      1740
     attaacagac tgcagaagaa aaaccatatg attatctcaa tagatgcaga gaaagcattc      1800
     aataaaacac aagacccttt catggtgaaa actctaagta aactgggtat agaaggaatg      1860
     ttcctcaata caatcaaagc aatttatgaa aaacccacga ccagcatcct attgaatggg      1920
     aaaaagttgg aagcatttcc actgagatct ggtaccatac agggatatcc attctcacca      1980
     ctgctattca gtatatttct ggaggcttta gccagagctg ttaggcaaga aaaagaaatt      2040
     gaagggatac aagagcctac ttatatttga tcaggaatct aaaaccaatt cctggagcaa      2100
     ggacagtcta ttcaataaat ggtgctggga tttccacgtg ctgaagcatg aagaaagacc      2160
     cctaccttac accttacaca aaaatccact caacatggat taaagaccta aatctatgac      2220
     ccgacaccat gaagttatta gagaacattg gagaaaccct gcaagatatt ggcaccgcaa      2280
     agacttcttg gaaaagaccc tggaggcaca ggcagtcaaa gccaaaatta actattgaga      2340
     ttacatcaaa ttgagaagtt ctgtactgca aaagaagcag tcaggaagtg aagaggcaac      2400
     tgacagaatg ggaaaaaata tttgcaaact aagcaacaga taaagcatta atagctagaa      2460
     tccacaaaga cataaagaaa ctccacagca tcaaaacaaa caacccactt aagagatggg      2520
     ccaaggacct cacttgccat ttttgaaaag aggaaatcca aatggccaac atccacatga      2580
     agaaatgttc aagatcgcta gcaatcaggg aaatgcaaat caaaaccaca atgaggtttc      2640
     acctcacccc gcttagaatg gctcacatac agaaatctac caacaataga tgctggaaag      2700
     gatgtgggga gaaagggaca ctaacccact gttggtggga atgcaaactg gttaagcccc      2760
     tatggaagtc agtctggaga tcctcagaaa cctgaatata accctaccat acaacccagc      2820
     catcccgctc ctggaattta cccaaaggaa attaaattgg caaacaaaca agctgtctgc      2880
     acctcaatgt ttattgcggc tcacttcaca atagctaaga cctggaacca acccaaatgc      2940
     ccatcaacag tagactggag gaagaaatta tgggacatgt actctataga atactatata      3000
     gaagcaaaaa aaaacaatga aatccggtca tttgcaacaa aatggaggaa tctggaacac      3060
     atcatgctga gtgaaataag ccagtcccaa agggacaaat atcatatgtt ctccctgatc      3120
     agtgacaact gacccagcac caaaaaggaa acctgtcaaa gtgaaatgaa cactatgaga      3180
     aacagtgact tgaacagccc ttgtcctgac tgttgatgta caatgtaata ctttatccct      3240
     tttagtattt tttggttgtt ctacttaata ctattggttg aactctgtaa ttaacacaca      3300
     attattctta ggtgtttaaa tttaactgaa aagtaatccc tgttaaatat aagagtggga      3360
     ataagagagg gaagagatgt gcaattcggg acatgctcaa actgacttac ctcaaatggt      3420
     agagttagaa acagaccagg ggattcgaat tcaatcccat tgaggtggcc atgttccaat      3480
     gccatctcac tagtcccagt gatcaatttc tgttcacaat tgatcgtaat gataggcata      3540
     agagtcagag ggatcacata aacaagacta gtgtctgcta atactaactg acagaattaa      3600
     aaatggagag aacattccaa catgggaaat gggatacaca tcagactcat agaatggcac      3660
     atgtcctaaa cagcactctg gcctcagaat cagcccttaa ggcattcaca tctggctgaa      3720
     gagcccatga aagtatttca ggcaatggaa aggtaagatg ctctagaaaa aaaaaaaaaa      3780
     aaaggagtta aatgagctaa atgaaagatc tctgtgagcg agatcccagt tgaaagaatg      3840
     ggccattgag gaaggaggta ccgttctcta aagggaggag tggacttcca ctttcactat      3900
     gaccttgtct aaataagatc gaagtcagtg aactcaaaag gcctccatag ccttggtaac      3960
     tcatgacagg agcctgggga gataactgac cccctaaaca agaatgtcaa tttgttaagt      4020
     caacgacagg agtcgctgtg cacttactcc tcatgtagga tctctgtcct taatgtgttg      4080
     ttcaatgtga attaatgcta taactagtac tcaaacagta tttatacttt atgttctgtg      4140
     tgggtgcaaa ctgttaaaat ctttacttaa tatatactaa attgatcttc tgtatataaa      4200
     gataattgaa aatgaatctt gatgtgaatg gaatgggaga gggagcagga gatgggaggg      4260
     ttgcaggttg gcaaggcaag ttatgaggat gaagccattg taatctataa gctgtaattt      4320
     ggaaatttat atttattaaa taaacagtta aaaattaaat aaataaaata aaaa            4374
//
ID   SINEC1D_CF  repbase; DNA   ; MAM   ; 195 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Old dog SINE element SINEC1D_CF.
XX
KW   SINE; Interspersed Repeat; SINE element; SINEC1D_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-195
RA   Jurka J., Gentles A.;
RT   "Old dog SINE element SINEC1D_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   This dog SINE element has average similarity to consensus of
CC   79%. In addition, it appears to as closely related to Phoca
CC   vitulina (harbor seal) SINEC_PV, as to other dog SINE
CC   elements.
XX
SQ   Sequence 195 BP; 41 A; 58 C; 44 G; 52 T; 0 others;
     aggggcgcct gggtggctca gtcggttaag catctgcctt cagctcaggt catgatctca        60
     gggtcctggg atcgagccct gcatcgggct ccctgctcag tggggagtct gcttctccct       120
     ctccctctgc ctgcccctct gcctacttgt gctctctctc tcaaataaat aaataaaatc       180
     tttaaaaaaa aaaaa                                                        195
//
ID   MLT1G2      repbase; DNA   ; MAM   ; 590 BP.
XX
AC   .
XX
DT   06-MAY-1999 (Rel. 4.04, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 3)
XX
DE   Mammalian long terminal repeat, MLT1G2 subfamily - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat;
KW   Long terminal repeat of retrovirus-like element; MLT1G; MLT1G2;
KW   MaLR family.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-285
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
RN   [2]
RP   32-590
RA   Jurka J.;
RT   "MLT1G2..";
RL   Direct Submission to Repbase Update (1999)(April; extension June
RL   1999).
XX
RN   [3]
RP   1-590
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [3] (Consensus)
XX
CC   LTR of MLT1G2 retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 25%.
CC   The original MLT1G consensus was a combination of the MLT1G2 5' half
CC   and MLT1F 3' half.
XX
SQ   Sequence 590 BP; 132 A; 162 C; 155 G; 139 T; 2 others;
     tgtggcgatt tttaaaacat ggccgcaaat tctttgacac tcctctcatt gagangtggg        60
     gtctatgtcc cctccccttt gaatctgggc gggcttgtga ctgctttaac caatagagta       120
     cggcggaagt gacgctgtgt gacttctgag gctaggtcat aaaaggcgat gcagcttctg       180
     ccttgttcgc tggaacactt gctcttggag ccctgagccg ccatgtaaga agtctgacta       240
     ccctgaggcc gccatgctgt gaggaagccc aagccacatg gagaggccac gtgtaggcgc       300
     tctggtcgac agtcccagct gagcccagnc ttcaagtcat cccagcccag gcgccagaca       360
     tgtgagtgaa gaagcctcca gatgattcca gcccccagcc gtcgagtcac ccccagcctt       420
     cgagtcttcc cagctgaggc cccagacatc gtggagcaga gacaagccat ccctgctgtg       480
     ccctgtccga attcctgacc cacagaatcc gtgagcataa taaaatggtt gttgttttat       540
     gccactaagt tttggggtgg tttgttatgc agcaatagat aactggaaca                  590
//
ID   MER34B      repbase; DNA   ; MAM   ; 599 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR; LTR34B; MER34B;
KW   MER4I-group; retroelement.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Toth G., Jurka J.;
RT   "Repetitive DNA in and around translocation breakpoints of the
RT   Philadelphia chromosome..";
RL   Gene 140, 285-288 (1994).
XX
RN   [2]
RP   546-1
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
RN   [3]
RP   1-546
RA   Kapitonov V.V., Jurka J.;
RT   "MER34B..";
RL   Direct Submission to Repbase Update (JUN-1998).
XX
RN   [4]
RP   1-599
RA   Naik A., Jurka J.;
RT   "MER34B..";
RL   Direct Submission to Repbase Update (AUG-1998).
XX
CC   [4] (Consensus)
XX
CC   70% similar to MER34 approximately over the entire length.
XX
SQ   Sequence 599 BP; 174 A; 132 C; 104 G; 185 T; 4 others;
     tgtgggagac cagaatatgc caccccaaaa tatgcctctt tggcataagg aytgttgagc        60
     tgaaggcaat taagaagaag cagatgcagg aaagctctct gccctccctc tatttgccta       120
     aaagcaggac atagatttac aaagacaaaa ggtatcctgc ccccacccct tctaccaggg       180
     agaacaaagg ttaaccactg aagacaactt tagaccctta ttggcctgga gatggtacca       240
     gaggaatcta cattaacaag ccttactaac tagcctttat ctgccagtta tttgccttcc       300
     cacaagttgc tgcccctaga gactcaaagt ccttttcctt tgtcttgtca cttctctaaa       360
     aatttntttt actgttcttt gttgaagatg ctatataagc tggaattcaa agccacctct       420
     ttgagaacta ctcattctct gggtgtctcc catgtatata tgaaatatac atgttnaaaa       480
     ataaanttaa taaacttctg tctgtttttc tcttgttaat ctgtcttttg ttacaggggt       540
     ctattccaac taagaactta tgagggttga ggagaaaaaa ttatttttct tcccctaca        599
//
ID   BTALUL1     repbase; DNA   ; MAM   ; 311 BP.
XX
AC   X00376;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Cow Alu-like repetitive sequence.
XX
KW   SINE1; SINE; Interspersed Repeat; Alu-like repetitive sequence;
KW   BTALUL1; Repetitive sequence.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RA   Schimenti C.J., Duncan H.C.;
RT   "Ruminant globin gene structures suggest an evolutionary role for
RT   Alu-type repeats.";
RL   Nucleic Acids Res 12(3), 1641-1655 (1984).
XX
DR   GenBank; X00376; Positions    1258    1568.
XX
SQ   Sequence 311 BP; 76 A; 73 C; 84 G; 78 T; 0 others;
     atttccctca tagctcagtt ggttaagcat ctgcctgcaa tgcaagagat cccagttcga        60
     ttcctgggtc gggaaggatg gctggagaag ggataggcac ccactccagt attcttgggt       120
     ttcccttgtg gctcagctgg taaagaatct gcctgcaatg tgggagaccc agcttctatc       180
     cctgagtttg gaagatcccc tggagaaggg aaaggctacc cactccagta ttctggcctg       240
     gagaaatcta tggactgtag agtcatgggg ttgcaaagaa tcagacacga ttgagagact       300
     ctcacttcac t                                                            311
//
ID   CHRL        repbase; DNA   ; MAM   ; 168 BP.
XX
AC   .
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Cetartiodactyl CHR-like SINE type sequence - a consensus.
XX
KW   SINE; Interspersed Repeat; CHR-1; CHR-2; CHRL;
KW   non-LTR retrotransposon.; tRNA.
XX
OS   Cetartiodactyla
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RA   Nikaido M., Matsuno F., Abe H., Shimamura M., Hamilton H.,
RA   Matsubayashi H., Okada N.;
RT   "Evolution of CHR-2 SINEs in cetartiodactyl genomes: possible evidence
RT   for the monophyletic origin of toothed whales.";
RL   Mamm. Genome 12(12), 909-915 (2001).
XX
RN   [2]
RA   Shimamura M., Abe H., Nikaido M., Ohshima K., Okada N.;
RT   "Genealogy of families of SINEs in cetaceans and artiodactyls: the
RT   presence of a huge superfamily of tRNA(Glu)-derived families of
RT   SINEs.";
RL   Mol. Biol. Evol 16(8), 1046-1060 (1999).
XX
RN   [3]
RA   Nomura O., Lin H.Z., Wada Y., Yasue H.;
RT   "A SINE species from hippopotamus and its distribution among animal
RT   species.";
RL   Mamm. Genome 9(7), 550-555 (1998).
XX
RN   [4]
RA   Shimamura M., Yasue H., Ohshima K., Abe H., Kato H., Kishiro T.,
RA   Goto M., Munechika I., Okada N.;
RT   "Molecular evidence from retroposons that whales form a clade within
RT   even-toed ungulates.";
RL   Nature 388(6643), 666-670 (1997).
XX
RN   [5]
RA   Kohany O., Jurka J.;
RT   "CHRL consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [5] (Consensus)
XX
CC   Average similarity to consensus 84%.
XX
SQ   Sequence 168 BP; 47 A; 51 C; 39 G; 30 T; 1 others;
     ggacttccct ggtggtccag tggctaagac tccacgctcc caatgcaggg ggcccaggtt        60
     cgatccctgg tcagggaact agatcccaca tgctacaact aagagttcgc atgccacaac       120
     taaagatccc atgtgcygca actaagaccc ggcacagcca aataaata                    168
//
ID   L1MB6_5     repbase; DNA   ; MAM   ; 1711 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   L1MB6_5 LINE1 repetitive element - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 repeat; L1MB6_5;
KW   MER60.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   477-1170
RA   Kapitonov V.V., Jurka J.;
RT   "L1MB6_5..";
RL   Direct Submission to Repbase Update (1997).
XX
RN   [2]
RP   1-1711
RA   Smit A.F.;
RT   "L1MB6_5..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [2] (Consensus)
XX
CC   5' end of LINE elements with L1MB5-8 subfamily 3' ends, comprising the
CC   5' UTR and part of ORF1 (from pos. 1043) [2].
XX
SQ   Sequence 1711 BP; 644 A; 328 C; 351 G; 352 T; 36 others;
     ggtaatgtca gcgaaaatgg cggagtaagg amctccgaaa attcactcct ccataaaagc        60
     aatgaaaaca ctggcaaaaa ttgtcagaat caactttttc agaactctgg aaattaacca       120
     aaggcttaca gcaatctagg aagtgtttat tcaagaaaaa yagctgaatc tcwgtaagaa       180
     cagcgagctt tgtggtattt taacttgccc tantcccatc ccccwctctc cagctcagca       240
     gtagccttga aaataacagc ttatattatg gtgaaaacca gcagccaccg gagkgggcag       300
     aacgggtttg gagcttctca aaagycncat tcccagggaa ttgtcattat ttgacctgtc       360
     tggcggctcc ctggaagact ccattcamag ggcttgtctt tatttgacct gactcagagc       420
     tcactcagtg cgaamagcat tatacctggg ggcatttgtt gaaaacawtt agaggcaawt       480
     gtttaacacc acagctgcct gaggcagtgr ataacagttg gggcaaacaa gaggctgacc       540
     aaaaagctta aaaggaaaag ctggggaatg agatgtccgn aggggctttg aaaagctcca       600
     acatattcct gggaatctag aaggccacgc gcatgcccag ggctgtacac atgctcagaa       660
     aagacctaag aaggccctaa gctctcacct ctggctgacc ttgagactct gcacaagcag       720
     gaagtgaaga ctaaggcaga gttgtaaact gcctggctga gtgttgaagg tatgccccaa       780
     cacacacaca gaaccccttg gcaaagamtg ggagacttgt tggttcmagg catttaagga       840
     aatctctgtc caatcattag ctgaccacta agctaacnga gcagagactt cagtggccac       900
     acatgacaaa gaatacagac tttacaaaat tagttcagaa aagtcactaa acaaacagca       960
     acaanaacac aaaagagyaa caacaaaccc tggaaaggag ggagaatctg atttccagag      1020
     ttgccacatt atattattta aaatgtccag ttttcaacaa aaaattacga ggcatacaaa      1080
     gaaacaagaa agtatggccc atacacagga aaaaaagcag ttaatagaaa ctatccctga      1140
     ggaagcccag acgttggact tactagacaa agactttaaa tcagctattw taaatatgtt      1200
     caaagaacta aaggaaacca tgtntaaaga antaaagaaa aatatragaa cgatgtctca      1260
     ccaaatagag aatatcaata aagagacaaa aattataaaa aataaancaa atagaaattc      1320
     tggagttgaa aagtacaata actgaaataa aaagttcact agaggggtac aacagcagat      1380
     ttgagcwggc agaagaaaga atcagcgaac ttaaagatag gtcaatcgag attattcagt      1440
     ctgaggaaca aagaaaaaag aatgaagaaa aatgaasaga gcctcagaga cctgtgggac      1500
     accatcaagc gtaccaatat atgcataatg ggaatcccag aaggagaaga gagaaarkgg      1560
     cagaaagaat atttaaagra atagtggccg aaaatttccc aaatttgatg aaaaacatyw      1620
     ayctwcayat ccaagaagct caataamctc caagtaggat aaactcaaag agatccacat      1680
     ttasatgcat catagtcaaa ctgctgaaaa a                                     1711
//
ID   MER3        repbase; DNA   ; MAM   ; 209 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   07-OCT-1998 (Rel. 3.09, Last updated, Version 3)
XX
DE   Nonautonomous DNA transposon.
XX
KW   hAT; DNA transposon; Interspersed Repeat;
KW   Interspersed repetitive sequence; MER3.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome..";
RL   Nucleic Acids Res 18(1), 137-141 (1990).
XX
RN   [2]
RP   1-209
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
SQ   Sequence 209 BP; 58 A; 36 C; 46 G; 67 T; 2 others;
     cagcgctgtc caatagaact ttctgtggtg atggaaatgt tctatatctg cgctgtccaa        60
     tacggtagcc actagccaca tgtggctayt gagcacttga aatgtggyta gtgcgactga       120
     ggaactgaat ttttaatttt atttaatttt aattaattta aatttaaata gccacatgtg       180
     gctagtggct accatattgg acagcgcag                                         209
//
ID   BTSAT2      repbase; DNA   ; MAM   ; 251 BP.
XX
AC   J00028;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine 1.706 g/ml satellite.
XX
KW   SAT; Satellite; Simple Repeat; BTSAT2; Repetitive sequence;
KW   Satellite repetitive element.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-251
RA   Pech M., Streeck E.R., Zachau G.H.;
RT   "Patchwork structure of a bovine satellite DNA.";
RL   Cell 18, 883-893 (1979).
XX
DR   GenBank; J00028; Positions       1     251.
XX
SQ   Sequence 251 BP; 82 A; 59 C; 68 G; 42 T; 0 others;
     gatcatgtgc ctctggaggc aataaacaaa gagctgagta ggcacgaatc aaacagtcag        60
     caggcaataa tcatggaact cagctgtgag gaatcatgct gctcagctgg caataatcaa       120
     gcagctgagc aggcaggaat tacacagcac agctggcaat tgtcaagcag atgacaggca       180
     ggaatcgtgc agctcagctg gcaattgtca agcagatgag cagacactaa tcacgcagct       240
     cagcaggccc g                                                            251
//
ID   SINEC1C2_CF repbase; DNA   ; MAM   ; 158 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Dog SINE element SINEC1C2_CF.
XX
KW   SINE; Interspersed Repeat; SINE element; SINEC1C2_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-158
RA   Jurka J., Gentles A.;
RT   "Dog SINE element SINEC1C2_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 86%.
XX
SQ   Sequence 158 BP; 19 A; 49 C; 44 G; 46 T; 0 others;
     gggtgcctgg gtggctcagt ggttgagcgt ctgcctttgg ctcaggtcat gatcccgggg        60
     tcctgggatc gagtcccaca tcgggctccc tgcagggagc ctgcttctcc ctctgcctgt       120
     gtctctgcct ctctctctct ctcttcatga ataaataa                               158
//
ID   L1_CF       repbase; DNA   ; MAM   ; 4251 BP.
XX
AC   AB012223;
XX
DT   28-MAR-2001 (Rel. 6.02, Created)
DT   28-MAR-2001 (Rel. 6.02, Last updated, Version 1)
XX
DE   Dog L1 (LINE1) element (ORF2 mRNA).
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1_CF; LINE-1.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RA   Choi Y., Ishiguro N., Shinagawa M., Kim J.C., Okamoto Y.,
RA   Minami S., Ogihara K.;
RT   "Molecular structure of canine LINE-1 elements in canine transmissible
RT   venereal tumor.";
RL   Anim. Genet 30(1), 51-53 (1999).
XX
RN   [2]
RP   1-4251
RA   Ishiguro N.;
RT   "L1_CF.";
RL   Direct Submission to Genbank (17-MAR-1998)Naotaka Ishiguro, Obihiro
RL   University of Agriculture and Veterinary Medicine, Department of
RL   Veterinary Public Health; Inada cho, Obihiro, Hokkaido 080-8555, Japan
RL   (E-mail:ishiguro@obihiro.ac.jp, Tel:0155-49-5391, Fax:0155-49-5402).
XX
DR   GenBank; AB012223; Positions       1    4251.
XX
SQ   Sequence 4251 BP; 1650 A; 837 C; 868 G; 896 T; 0 others;
     caaggctctc attcaaaatg gaaggagaga taaagagctt ccaagacagg caggaactga        60
     aagaatatgt gacctccaaa ccagctctgc aagaaatttt aagggggact cttaaaattc       120
     ccctttaaga agaagttcag tggaacagtc cacaaaaaca aggactgaat agatatcatg       180
     atgacactaa actcatatct ctcaatagta actctgaatg tgaacgggct taatgacccc       240
     atcaaaaggc gcagggtttc agactggata aaaaagcagg acccatctat ttgctgtcta       300
     caagagactc attttagaca gaaggacacc tacagcctga aaataaaagg ttggagaacc       360
     atttaccatt cgaatggtcc tcaaaagaaa gcaggggtag ccatccttat atcagataaa       420
     ctaaaattta ccccaaagac tgtagtgaga gatgaagagg gacactatat catacttaaa       480
     ggatctatcc aacaagagga cttaacaatc ctcaatatat atgccccgaa tgtgggagct       540
     gccaaatata taaatcaatt attaaccaaa gtgaagaaat acttagataa taatacactt       600
     atacttggtg acttcaatct agctctttct atactcgata ggtcttctaa gcacaacatc       660
     tccaaagaaa cgagagcttt aaatgataca ctggaccaga tggatttcac agatatctac       720
     agaactttac atccaaactc aactgaatac acattcttct caagtgcaca tggaactttc       780
     tccagaatag accacatatt gggtcaccaa tcgggtctga accgatacca aaagattggg       840
     atcgtcccct gcatattctc agaccataat gccttgaaat tagaactaaa tcacaacaag       900
     aagtttggaa ggacctcaaa cacgtggagg ttaaggacca tcctgctaaa agatgaaagg       960
     gtcaaccagg aaattaagga agaattaaaa agattcatgg aaactaatga gaatgaagat      1020
     acaaccgttc aaaatctttg ggatgcagca aaagcagtcc tgagggggaa atacatcgca      1080
     atacaagcat ccattcaaaa actggaaaga actcaaatac aaaagctaac cttacacata      1140
     aaggagctag agaaaaaaca gcaaatggat cctacaccca ggagaagaag ggagttaata      1200
     aagattcgag cagaactcaa cgaaatcgaa accagaagaa ctgtggaaca gatcaacaga      1260
     accaggagtt ggttctttga aagaattaat aagatagata aaccattagc cagccttctt      1320
     aaaaagaaga gagagaagac tcaaattaat aaaatcatga atgagaaagg agagatcact      1380
     accaacacca aggaaataca aacgatttta aaaacatatt atgaacaggt atacgccaat      1440
     aaattaggca atctagaaga aatggacgca ttcctggaaa gccacaaact accaaaactg      1500
     gaacaggaag aaatagaaaa cctgcacagg ccaataacca gggaggaaat tgaagcagtc      1560
     atcaaaaacc tcccaagaca caagagtcca gggccagatg gcttcccagg ggaattttat      1620
     caaacgttta aagaagaaat catacctatt ctcctaaagc tgtttggaaa gatagaaaga      1680
     gatggagtac ttccaaattc gttttatgaa gccagcatca ccttaattcc aaaaccagac      1740
     aaagacccca ccaaaaagga gaattacaga ccaatatccc tgatgaacat ggatgcaaaa      1800
     attctcaaca agatactggc caataggatc caacagtaca ttaagaaaat tattcaccat      1860
     gaccaagtag gatttatccc cgggacacaa ggctggttca acacccgtaa aacaatcaat      1920
     gtgattcatc atatcagcaa gagaaaaacc aagaaccata tgatcctctc attagatgca      1980
     gagaaagcat ttgacaaaat acagcatcca ttcctgatca aaactcttca gagtgtaggg      2040
     atagagggaa cattcctcga catcttaaaa gccatctacg aaaagcccac agcaaatatc      2100
     attctcaatg gggaagcact gggagccttt cccctaagat caggaacaag acagggatgt      2160
     ccactctcac cactgctatt caacatagtg gtggaagtcc tagcctcagc aatcagacaa      2220
     caaaaagact ttaggggcat tcaatttggc aaagaagaag tcaaactctc cctcttcgcc      2280
     gatgagatga tcctctacat agaaaaccca aaagtctcca ccccaagatt gctacaactc      2340
     atgcagcatt gtggtagcgt ggcaggatac atcatcaatg cccagaaatc agtggcattt      2400
     ctatacacta acaatgagac tgaagaaaga gaaattaagg agtcaatccc atttacaatt      2460
     gcacccaaaa gcataagata cctaggaata aacctaacca gggaggtaaa ggatctatac      2520
     cctcaaaact atagaacact tctgaaagaa attgaggaag acacaaagag atggaaaaat      2580
     attccatgct catggattgg cagaattaat attgtgaaaa tgtcaatgtt gcccagggca      2640
     atttacacgt ttaatgcaat ccctatcaaa ataccatgga ctttcttcaa agagttagaa      2700
     caaattattt taaaatttgt gtggaatcag aaaaaacccc gaatggccgg gggaatttta      2760
     ggaaaaaaaa ccatgtctgg gggcatctca atgccagatt tcaggttgta ctacaaagct      2820
     gtggtcatca agacagtgtg gtactggcac aaaaacagac acatagatca gtggaacaga      2880
     atagagaacc cagaagtgga ccctgaactt tatgggcaac taatcttcga taaaggagga      2940
     aagactatcc attggaagaa agacagtctc ttcaataaat ggtgctggga aaattggaca      3000
     tccacctgca ggaggatgga actagacccc tctctttcac cctacacaaa gatgaactcc      3060
     aaatggatga aagatctaaa tgtgagacca gattccatcc aaatcctaga ggagaacaca      3120
     ggccacaccc tttttgaaat cggccaccgt aacttcttgc aagatacatc cacgaaggcc      3180
     aaagaaacaa aagcaaaaat gaactattgg gacttcatca agataagaag cttttgcaca      3240
     gcaaaggata cagtcaacaa aactaaaaga caacctacag aatgggagaa gatatttgca      3300
     aatgacgtat cagataaagg gctagtttcc aagatctata aagaacttat taaactcaac      3360
     accaaagaaa caaacaatcc aatcatgaaa tgggccaaag acatgaacag aaatttcaca      3420
     gagggagaca tagacatggc caacatgcac atgaggaaat gctttgcatc aattgccatc      3480
     agggaaatac aaatcaaaac cacaatgaga taccacctca caccagtgag aatggggaaa      3540
     attaacaagg caggaaacca caaatgttgg agaggatgcg gagaaaaggg aaccctttta      3600
     cactgttggt gggaatgtga actggtgcag ccactctgga aaactgtgtg gaggttcctc      3660
     aaacagttaa aaatatacct gccctatgac ccagcaattg cactgttggg gatttacccc      3720
     aaagatacaa atgcaatgaa acgccgggac acctgcaccc cgatgtttat agcagcaatg      3780
     gccacgatag ccaaactgtg gaaggagcct cggtgtccaa cgaaagatga atggataaag      3840
     aagatgtggt ttatgtatac aatggaatat tactcagcta ttagcaatga cagataccca      3900
     ccatttgctt caacgtggat ggaactggag ggtattatgc tgagtgaagt aagtcagtcg      3960
     gagaaggaca aacattatat gttctcattc atttggggaa tataaataat agtgaaaggg      4020
     aatataaggg aagggagaag aaatgtgtgg gaaatatcag aaagggagac agaacgtaaa      4080
     gactgctaac tctgggaaac gaactagggg tggtagaagg ggaggagggc ggggggtggg      4140
     agtgaatggg tgacgggcac tgggggttat tctgtatgtt agtaaattga acaccaataa      4200
     aaaataaatt aaaaaaaaaa gatgaaacca cagaaaaaaa aaaaaaaaaa a               4251
//
ID   MER21B      repbase; DNA   ; MAM   ; 863 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   16-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat;
KW   Long terminal repeat of retrovirus-like element; MER21B.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   19-815
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
RN   [3]
RP   1-863
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [3] (Consensus)
XX
CC   LTR of a class I retrovirus-like element. 4 bp target site dups.
CC   Copies are on average 17% diverged from consensus.
CC   MER21B is a member of a closely interrelated group of LTRs further
CC   including MER34, MER39, LTR29, LTR48 and LTR49.
XX
SQ   Sequence 863 BP; 203 A; 188 C; 234 G; 218 T; 20 others;
     tgtgatattg tgaaatatat atttggtctt cgnccccgtt tcctggcaca nagctcctaa        60
     aacccttgga atctccngag tgataggagt ntctttgtgt gctaatgagn tgactgntgg       120
     ctggcggccc ctaggtagct tcaggatggg ggctggtcac cagaaagacc aaggcangat       180
     tagagggttg ggactttcag ccccaccccc caacctccag ggaggggaga ggggctgaag       240
     gttgagttga tcaccaatgg ccaatgatnt aatcaatcat gcctacgtaa tgaagcctcc       300
     ataaaaaccc aaaaggacng ggttcggaga gcttctggat agctgaacac gtggaggttc       360
     ctggagggtg gcgngcccgg ggagggcacg gaagctctgc gccccttctc ccatacctcg       420
     ccctatgcat ctcttcatct ggctgttcat ctgtatcctt tgtaatatcc tttataataa       480
     acnggtaaac gtaagtaaag tgtttccctg agttctgtga gccgctctag caaattaatc       540
     gaacccaagg agggggttgt gggaacccca atttatagcc ggtcggtcag aagcacaggt       600
     nacaacctgg ngcttgcgac tggcatctga agtggggggc agtcttgtgg gactgagccc       660
     tcaacctgtg ggatctgacg ctatctccag gtagatagtg tcagaattga attgaattag       720
     aggacaccca gctggtgtcc gctgnagaat tgnttgcttg cttgtnngtg gggaaaaacc       780
     cccacacatt tggtcacaga agtnttctgt gttgattgtn ntgagtgaga gaatagaaaa       840
     aacactttgt ttgtgttttt cca                                               863
//
ID   L1MEC_5     repbase; DNA   ; MAM   ; 2527 BP.
XX
AC   .
XX
DT   23-JAN-1998 (Rel. 3, Created)
DT   30-MAR-2001 (Rel. 6.02, Last updated, Version 3)
XX
DE   L1MEC_5 LINE1 repetitive element - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1M4_5; L1MEC_5;
KW   LINE1 repeat.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-2523
RA   Smit A.F.;
RT   "L1MEC_5..";
RL   Direct Submission to Repbase Update (1997).
XX
RN   [2]
RP   1-2527
RA   Jurka J.;
RT   "L1MEC_5..";
RL   Direct Submission to Repbase Update (2001).
XX
CC   [2] (Consensus)
XX
CC   5' end of LINE elements with L1ME1-2 subfamily 3' ends, comprising the
CC   5' UTR, ORF1 (pos. 793-1771 or more) and part of ORF2. Updated (2001)
CC   consensus is ~85% similar to the old one.
XX
SQ   Sequence 2527 BP; 1092 A; 406 C; 472 G; 532 T; 25 others;
     aatgtnttaa aaaattcact taaaatataa taggagactt ctgcttctgg ccaagatgga        60
     gtaacaggga ccggatttac cctcctacct gaaacaacta aaaaacagac aaaatatatg       120
     aaacaatagt tttcaagaca ctggacatca ggcaacgaag gacagtgatc cctgagagat       180
     gggaaacaaa tgaggtgagc cctatgattg ccccagctta ctgccttgag agagtttcca       240
     ggctgcagtg cagrgagggg gaacccaggc agagcccagc agactccctg agttgaggag       300
     acagagctga gagtccaggg agaccaaggn tagctagagt tcataggaca gagtaccaga       360
     gaggagagag ctgcacagag agagaactct agagattctg cagagggtcc cccttgagta       420
     ttcagcagag tactgatcag cacatgcatg tgaggaaact acctgaggcc agggaaagaa       480
     ccacccaaaa ggamaaaaag gattagaggg aacagtgcct ggtactcaca cagggctagg       540
     aatagtgcct gttcccacca gccagactgg aaaacctcat aattcacagg gcattgggta       600
     gagtactcag aagggtcttg cctcagtagt ggggaataat tagccctaga ctaaacactg       660
     ctctggtccc acctaacaaa tcttaaaagc aagacctgaa agaatcaaac tgtttccaag       720
     taacttaact gtatcccaga acaaagctca agaatattta taggaataca aaaatatcca       780
     gcacccaaca aggtaaaatt cacaatgtct ggcatccaat aaaaaattac caggcatgca       840
     aagaagcagg aaaatattat aacccataat gaggagaaaa atcaatcaat tgaaactgac       900
     ccagaactga cacagaattg ttagaattag aattagcaga caagganaca ttaaaacagt       960
     tattataact gtattttata tgttcaaaaa gttaagtaga gacatggaag atataaaaaa      1020
     gacccaaatc aaacttctag agagatgaaa actacaatgt ctgagatgaa aaatacactg      1080
     gatgggatta atagcagatt aganancatt gcagaagaaa agattagtga acttgaagac      1140
     atagcaatag aaactatcca aaatgaaaca cagagagaaa aaaaaattta aaaaattaaa      1200
     aagaaaagag catcagtgag ctgtgggaca acttcaagta gcctaatata tatgtaattg      1260
     gagtccccaa aggagaggag aaaagagaaa gagagaaaaa atatttgaag aaataatggc      1320
     taaaaatttt ccaaattttg atgaaaacta taaacccaca gatccaagaa gctcaacaaa      1380
     ccccaagcac aagaaacatg aagaaaacta caccaaggca catcataatc aaattgctca      1440
     aaaccagtga taaagagaaa aatcttaaaa gcagccagag aaaaaaagac acattacata      1500
     cagaggaaca aagataagga tgacagcaga tttcttatya gaaacaatgc aagcgagaag      1560
     acagtggagc aacatcttta aagtactgaa agaaaaaaaa actntttatc ttttgtcatt      1620
     acctagaatt ctataacnaa gaaaaaaact gtcaacctag aattctatac ccagcaaaaa      1680
     tatctttcaa aaataaaggt gaaataaaga ctttttcaga tatacaaaag ctgaaagaat      1740
     ttatcaccag cagatctgca nnactacaaa aaatgttaaa ggaagtcctt caggcagaag      1800
     gaaaatgata ccagatggaa atatggatct acacaaagga atgaagagca ccagaaatgg      1860
     taactacatg ggtaaatata taaaattttt tttttttatt atttaaaatc tctttaaaag      1920
     ataattgact gtttaaanca aaaataataa caatgtattg tggggtttat aacatatgta      1980
     aawaaaatgt atgacaacaa tngcacaaag gctaggaggg gagaaatgga agtatactgt      2040
     tgtaaggttc ttatactata tgtgaagtgg tataatatca cttgaaggta gactgtgata      2100
     anttaaagat gtatactata aaccctaaag caaccactaa aataacaaaa caaagagtta      2160
     taactaataa gccaacaaag gagataanat agaatcataa aaaatattca attaatccaa      2220
     aanaaggcag aaaaaaaaaa aagraaaaaa gaacagatag gacaaataga aaacaaatag      2280
     caagangata gatttaaacc caaccatatc aataatcaca ttaaatataa atggtctaaa      2340
     caycccaatt aaaaggcaga gattgtcaga ttggataaaa aancaagact caactatatg      2400
     ctgcctacna gaaatacact ttaaatataa agacacaaat aggttaaaag taaaaggatg      2460
     gaaaaagata tatcatncga aagaataccg ccaagagnca aaaaaggtca ttttataatg      2520
     ataaagg                                                                2527
//
ID   L1MA2       repbase; DNA   ; MAM   ; 1051 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MA2) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1M1; L1MA2; L1MA2 subfamily; MER14; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1024-888
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RP   1-1051
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [3]
RP   1-1051
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [3] (Consensus)
XX
CC   ORF2 ends at bp 684; average divergence of copies from consensus:
CC   9.5%.
XX
SQ   Sequence 1051 BP; 412 A; 170 C; 215 G; 253 T; 1 others;
     ttaataacca gaatatataa ggagctcaaa caactctata ggaaaaaatc taataatccg        60
     attaaaaaat gggcaaaaga tttgaataga catttctcaa aagaagacat acaaatggca       120
     aacaggcata tgaaaaggtg ctcaacatca ctgatcatca gagaaatgca aatcaaaact       180
     acaatgagat atcatctcac cccagttaaa atggcttata tccaaaagac aggcaataac       240
     aaatgctggc gaggatgtgg agaaaaggga accctcgtac actgttggtg ggaatgtaaa       300
     ttagtacaac cactatggag aacagtttgg aggttcctca aaaaactaaa aatagagcta       360
     ccatatgatc cagcaatccc actgctgggt atatacccaa aagaaaggaa atcagtatat       420
     cgaagagata tctgcactcc catgtttgtt gcagcactgt tcacaatagc caagatttgg       480
     aagcaaccta agtgtccatc aacagatgaa tggataaaga aaatgtggta catatacaca       540
     atggagtact attcagccat aaaaaagaat gagatcctgt catttgcaac aacatggatg       600
     gaactggagg tcattatgtt aagtgaaata agccaggcac agaaagacaa acatcgcatg       660
     ttctcactta tttgtgggat ctaaaaatca aaacaattga actcatggag atagagagta       720
     gaaggatggt taccagaggc tgggaagggt agtggggggt tggtggggag gtggggatgg       780
     ttaatgggta caaaaaaata gttagaaaga atgaataaga cctagtattt gatagcacaa       840
     cagggtgact atagtcaata ataatttaat tgtacatttw aaaataacta aaagagtata       900
     attggattgt ttgtaacaca aaggataaat gcttgagggg atggataccc cattttccat       960
     gatgtgatta ttacacattg catgcctgta tcaaaacatc tcatgtaccc cataaatata      1020
     tacacctact atgtacccac aaaaattaaa a                                     1051
//
ID   MSR1        repbase; DNA   ; MAM   ; 281 BP.
XX
AC   K03500;
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Human 37 BP minisatellite repeats, specific to chromosome 19.
XX
KW   MSAT; Satellite; Simple Repeat; MSR1; Tandemly repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-281
RA   Das K.H., Jackson L.C., Miller A.D., Leff T., Breslow L.J.;
RT   "The human apolipoprotein CII gene contains a novel chromosome 19
RT   specific minisatellite in its third intron..";
RL   J. Biol. Chem 262, 4787-4793 (1987).
XX
DR   GenBank; K03500; Positions       1     281.
XX
CC   This is a periodic sequence with periodicity 37 bp.
CC   First 37 nt are equivalent to a consensus sequence.
XX
SQ   Sequence 281 BP; 58 A; 147 C; 44 G; 32 T; 0 others;
     agtcaagacc cccagcccct cctccctcag acccaggagt caagaacccc cagcccctcc        60
     tccctcagac ccaggagtca agaaccccca gcccctcctc cctcagaccc aggagtcaag       120
     accccccagc ccctcctccc tcagactcat gagtccagac ccccagcccc tcctccctca       180
     gacccaggag tccagacccc cagcccctcc tccctcagac ccaggagtcc agacccccag       240
     cccctcctcc ctcagaccca ggagtccagg ccccacccct c                           281
//
ID   MER44C      repbase; DNA   ; MAM   ; 733 BP.
XX
AC   .
XX
DT   01-MAY-1996 (Rel. 1.04, Created)
DT   28-JUN-2000 (Rel. 5.05, Last updated, Version 3)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MER2 family; MER44;
KW   MER44C; Repetitive sequence; TIGGER7.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-733
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RP   1-733
RA   Smit A.F.;
RT   "MER44C..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   Internal deletion product of TIGGER7 MER2-family DNA transposon.
CC   23 bp terminal inverted repeats, TA target site.
CC   Consensus sequence reversed from [1] in agreement with Tigger7.
XX
SQ   Sequence 733 BP; 197 A; 165 C; 182 G; 189 T; 0 others;
     cagtagtccc cccttatccg cggtttcgct ttccgcggtt tcagttaccc gcggtcaacc        60
     gcggtccgaa aatattaaat ggaaaattcc agaaataaac aattcataag ttttaaattg       120
     cgcgccgttc tgagtagcgt gatgaaatct cgcgccgtcc cgctccgtcc cgcccgggac       180
     gtgaatcatc cctttgtcca gcgtatccac gctgtatacg ctacccgccc gttagtcact       240
     tagtagccgt ctcggttatc agatcgactg tcgcggtatc gcagtgcttg tgttcaagta       300
     acccttattt tacttaataa tggccccaaa gcgcaagagt agtgatgctg gcaattcgga       360
     tatgccaaag agaagccgta aagtgcttcc tttaagtgaa aaggtgaaag ttctcgactt       420
     aataaggaaa gaaaaaaatc gtatgctgag gttgctaaga tctacggtaa gaacgaatct       480
     tctatccgtg aaattgtgaa gaaggaaaaa gaaattcgtg ctagttttgc tgtcgcacct       540
     caaactgcaa aagttacggc cacagtgcgt gataagtgct tagttaagat ggaaaaggca       600
     ttaaatttgt gggtggaaga catgaacaga aacgtgttcc gattgatggc aatcgggttc       660
     ggtactatcc gcggtttcag gcatccactg ggggtcttgg aacgtatccc ccgcggataa       720
     ggggggacta ctg                                                          733
//
ID   BTSAT6      repbase; DNA   ; MAM   ; 680 BP.
XX
AC   M36668;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine 680 bp repeated unit of 1.723 satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; BTSAT6; Satellite repetitive element.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-680
RA   Piucienniczak G., Skowronski J., Plucienniczak A., Jaworski J.;
RT   "Nucleotide sequence of bovine 1.723 satellite DNA.";
RL   Z. Naturforsch., C, Biosci 40, 242-246 (1985).
XX
DR   GenBank; M36668; Positions       1     680.
XX
SQ   Sequence 680 BP; 118 A; 239 C; 213 G; 110 T; 0 others;
     gatcatgggc tggttcccct gcgctgcggc tgtgctaggg agcccaaacg cccaggggaa        60
     gcccgcacag cacatccacc tgcctctagg cgggaggaca gctccaggga aggcccggtc       120
     tggcaggcgc tttctgggca caaacggagc aacactctgg ctgtggagct gcctccccaa       180
     gccaggggca ccgggaccct gattccctcc gtgcggcgct agtctgggcg gggaagcacc       240
     agcttgggaa tgcagcctgg ggcgcttcct ttccctcgga aagagctctc cccgcgggag       300
     gctttggcag tgtgcacacc cccagcccct aagccctctg caaggacgcc tggctcctag       360
     gtccgaagga aggcgagagc tgagctgagg caccagtcag gcaccactca cggctcccac       420
     actcccgcag cctgctcctt cccgggcgcg aacgcagaag ctgggcaggg cttggggagg       480
     ctcgcccagc acagagcagc ctcttggccg gggctctgtt ctatcccctg ggcgcagagc       540
     tggagctccc cggtgtggaa gctcactcgg tccttcccag tacaggcttg caagcaccca       600
     ccggcagcca gcctcttctc tcccgcgttc cgggcattgg gctccaaacc tgggaccaaa       660
     gtaactgccc ggagctcact                                                   680
//
ID   L1S1_SS     repbase; DNA   ; MAM   ; 394 BP.
XX
AC   X15410;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Pig hox2.4 gene 3'end and L1Ss repeat 5'end.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; Hox-2.4 gene;
KW   L1 repeat; L1S1_SS; SSL1S1; Repetitive sequence.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RP   1-394
RA   Miller R.J.;
RT   "L1S1_SS.";
RL   Direct Submission to Genbank (07-1989)Miller J.R., Institute of Animal
RL   Physiology and Genetics Research, Babraham Hall, Cambridge CB2 4AT, U
RL   K..
XX
RN   [2]
RP   1-394
RA   Baay F.M., Miller R.J.;
RT   "Direct submission.";
RL   Unpublished.
XX
DR   GenBank; X15410; Positions     182     575.
XX
SQ   Sequence 394 BP; 170 A; 60 C; 74 G; 90 T; 0 others;
     taataattac cttaaatgtc agtggactga atgctccaaa caaaagacaa agtgtggcat        60
     tagagaccca ccttaaggca aagaggcata aattgaaagt aagggggtgg aaaagacatt       120
     catgagaatg taaatgatac aaaagcagga gtcacagtac tcatataagg ccaagtaggc       180
     taaaacaaag ggcgtaaaga aagaatgaca ctattaatga taaaaggatc aattcaagat       240
     gaggatatta catttgtgaa tatatatgtc cctaatatgt gagcacccaa atacaaacaa       300
     ctaatatatt catagatata aaagagaatt tgatgggaac aaaataatag gatactttaa       360
     cactccactc acatcaatga acagatcctc taga                                   394
//
ID   MLT1D       repbase; DNA   ; MAM   ; 505 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1D subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; MER26; MLT1D;
KW   MaLR family; retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   334-465
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1D retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 18-19%. Intermittant subfamily
CC   between MLT1C and MLT1E2; 83% full-length similarity to MLT1C.
XX
SQ   Sequence 505 BP; 145 A; 101 C; 146 G; 112 T; 1 others;
     tgtggtaggc wgaataatgg ccccccaaag atgtccacgt cctaatcccc ggaacctgtg        60
     aatatgttac cttacatggc aaaagggact ttgcagatgt gattaagtta aggatcttga       120
     gatggggaga ttatcctgga ttatccgggt gggcccaatg taatcacaag ggtccttata       180
     agagggaggc aggagggtca gagtcagaga aggagatgtg acgacggaag cagaggtcgg       240
     agtgacgacg ttgctggctt tgaagatgga ggaaggggcc acgagccaag gaatgcgggc       300
     ggcctctaga agctggaaaa ggcaaggaaa cggattctcc cctagagcct ccagaaggaa       360
     cgcagccctg ccgacacctt gattttagcc cagtgagacc catttcggac ttctgacctc       420
     cagaactgta agataataaa tttgtgttgt tttaagccac taagtttgtg gtaatttgtt       480
     acagcagcaa taggaaacta ataca                                             505
//
ID   L1-Y_CF     repbase; DNA   ; MAM   ; 6298 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.1, Created)
DT   17-NOV-2004 (Rel. 9.1, Last updated, Version 1)
XX
DE   Young L1 subfamily from dog.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1-Y_CF; LINE1;
KW   young subfamily.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-6298
RA   Jurka J.;
RT   "Consensus sequence of young, possibly active LINE1 subfamily from
RT   Canis familiaris.";
RL   Repbase Reports 4(10), 282-282 (2004).
XX
CC   [1] (Consensus)
XX
CC   Individual copies are over 99% identical to L1-Y_CF consensus
CC   sequence.
XX
SQ   Sequence 6298 BP; 2214 A; 1350 C; 1413 G; 1321 T; 0 others;
     ggggggagga gcaagatggc ggaagagtag ggtctccaaa tcacctgtct ccaccaaact        60
     acctagaaaa ccttcaaatt atcctgaaaa tctatgaatt cggcctgaga tttaaagaga       120
     gaccagctgg aatgctacag tgagaagagt tcgcgcttct atcaaggtag gaagacgggg       180
     aaaaagaaat aaaggaacaa aggcctccaa gggggagggg ccccgcgagg agccgggctg       240
     aggccggggc gagtgtcccc aggacaggag agccccgtcc cggaggagca ggagctgcac       300
     cgaccttccc gggcggaaag gggctcgcgg ggagttggag caggacccag gagggcgggg       360
     atgccctcgg gctcccgggg acagtaacag caactgcgcg cccaggagag tgcgccgagc       420
     tccctaaggg ctgcagcgcg cacggcggga cccggcggga cccggagcag ctggaggggc       480
     tcgggcggcg gctccgcgga gggggctgcg cggccccggg agcagctcgg aggggctcgg       540
     gcagaggaag aggctccgtg cggagggggc tgcgcggttc caggagcagc tcggaggggc       600
     tcgggcggcg gctccgcgga gggggctgcg cggcccggga gcgcgaatcc accagcgcag       660
     gctccggagc acagggcgcc gggacacagc ccaggatccc gcctcccccg ggacaggcag       720
     aggccgggag ggcccaggac agcgaggacg ctcctgcccc agctgagcag atcagcggcc       780
     ccgccccgga gcctccaggc cctgcagacg gagttcctgc cggagctgaa tccaggtttc       840
     cagagctgcc ccgccactgg ggctgttcct cctgcggcct cacggggtaa acaaccccca       900
     ctgagccctg caccaggcag gggcacagca gctcccccaa ctgctaacac ctgaaaatca       960
     gcacaacagg cccctccccc agaacaccag ctagacggac aacttccagg agaagccaag      1020
     ggacttaaag tacacagaat cagaagatac tccccggtgg ttcttttttt gtttgtttgt      1080
     ttttgttttt gtttttgttt ttgtttttgt tttgttttgc tttttgattt gtttccttcc      1140
     cccaccccct ttttttctcc tttctttttc tttctctttt tcttcttttt tttttcgttt      1200
     tttttttctt tttcttccct ttttttttct ctttctcttt tctttccttc tttctctcct      1260
     ctctttttct ctttttccca atacaacttg cttttggcca ctctgcactg agcaaaatga      1320
     ctagaaggaa aacctcacct caaaagaaag aatcagaaac agtcctctct cccacagagt      1380
     tacaaaatct ggattacaat tcaatgtcag aaagccaatt cagaagcact attatacagc      1440
     tactggtggc tctagaaaaa agtataaagg actcaagaga cttcatgact gcagaattta      1500
     gagctaatca ggcagaaatt aaaaatcaat tgaatgagat gcaatccaaa ctagaagtcc      1560
     taacgacgag ggttaacgag gtggaagaac gagtgagtga cctagaagac aagttgatag      1620
     caaagaggga aactgaggaa aaaagagaca aacaattaaa agaccatgaa gatagattaa      1680
     gggaaataaa cgacagcctg aggaagaaaa acctacgttt aattggggtt cccgagggcg      1740
     ccgaaaggga cagagggcca gaatatgtat ttgaacaaat tctagctgaa aactttccta      1800
     atctgggaag ggaaacaggc attcagatcc aggaaataga gagatccccc cctaaaatca      1860
     ataaaaaccg ttcaacacct cgacatttaa ttgtgaagct tgcaaattcc aaagataagg      1920
     agaagatcct taaagcagca agagacaaga aatccctgac ttttatgggg aggagtatta      1980
     gggtaacagc agacctctcc acagagacct ggcaggccag aaagggctgg caggatatat      2040
     tcagggtcct aaatgagaag aacatgcaac caagaatact ttatccagca aggctctcat      2100
     tcaaaatgga aggagagata aagagcttcc aagacaggca gcaactaaaa gaatatgtga      2160
     cctccaaacc agctctgcaa gaaattttaa gggggcctct taaaattccc ctttaagaag      2220
     aagttcagtg gaacagtcca caaaaacaaa gactgaatag atatcatgat gacactaaac      2280
     tcatatctct caatagtaac tctgaatgtg aacgggctta atgaccccat caaaaggcgc      2340
     agggtttcag actggataaa aaagcaggac ccatctattt gctgtctaca agagactcat      2400
     tttagacaga aggacaccta cagcctgaaa ataaaaggtt ggagaaccat ttaccattcg      2460
     aatggtcctc aaaagaaagc aggggtagcc atccttatat cagataaact aaaatttacc      2520
     ccaaagactg tagtgagaga tgaagaggga cactatatca tacttaaagg atctattcaa      2580
     caagaggact taacaatcct caatatatat gctccgaatg tgggagctgc caaatatata      2640
     aatcaattat taaccaaagt gaagaaatac ttagataata atacacttat acttggtgac      2700
     ttcaatctag ctctttctat actcgatagg tcttctaagc aaaacatctc caaagaaacg      2760
     agagctttaa atgatacact ggaccagatg gatttcacag atatctacag aactttacat      2820
     ccaaactcaa ctgaatacac attcttctca agcgcacatg gaactttctc cagaatagac      2880
     cacatattgg gtcacaaatc gggtctgaac cgataccaaa agattgggat tgtcccctgc      2940
     atattctcgg accataatgc cttgaaatta gaactaaatc acaacaagaa gtttggaagg      3000
     acctcaaaca catggaggtt aaggaccatc ctgctaaaag ataaaagggt caaccaggaa      3060
     attaaggaag aattaaaaag attcatggaa actaatgaga atgaagatac aaccgttcaa      3120
     aatctttggg atgcagcaaa agcagtccta agggggaaat acatcgcaat acaagcatcc      3180
     attcaaaaac tggaaagaac tcaaatacaa aagctaacct tacacataaa ggagctagag      3240
     aaaaaacagc aaatagatcc tacacccaag agaagaaggg agttaataaa gattcgagca      3300
     gaactcaacg aaatcgagac cagaagaact gtggaacaga tcaacagaac caggagttgg      3360
     ttctttgaaa gaattaataa gatagataaa ccattagcca gccttattaa aaagaagaga      3420
     gagaagactc aaattaataa aatcatgaat gagaaaggag agatcactac caacaccaag      3480
     gaaatacaaa cgattttaaa aacatattat gaacagctat acgccaataa attaggcaat      3540
     ctagaagaaa tggacgcatt cctggaaagc cacaaactac caaaactgga acaggaagaa      3600
     atagaaaacc tgaacaggcc aataaccagg gaggaaattg aagcagtcat caaaaacctc      3660
     ccaagacaca agagtccagg gccagatggc ttcccaggag aattttatca aacgtttaaa      3720
     gaagaaatca tacctattct cctaaagctg tttggaaaga tagaaagaga tggagtactt      3780
     ccaaattcgt tctatgaagc cagcatcacc ttaattccaa agccagacaa agaccccgcc      3840
     aaaaaggaga attacagacc aatatccctg atgaacatgg atgcaaaaat tctcaacaag      3900
     atactggcca ataggatcca acagtacatt aagaaaatta ttcaccatga ccaagtagga      3960
     tttatccctg ggacacaagg ctggttcaac acccgtaaaa caatcaatgt gattcatcat      4020
     atcagcaaga gaaaaaccaa gaaccatatg atcctctcat tggatgcaga gaaagcattt      4080
     gacaaaatac agcatccatt cctgatcaaa actcttcaga gtgtagggat agagggaaca      4140
     ttcctcgaca tcttaaaagc catctatgaa aagcccacag caaatatcat tctcaatggg      4200
     gaagcactgg gagcctttcc cctaagatca ggaacaagac agggatgtcc actctcacca      4260
     ctgctattca acatagtact ggaagtccta gcctcagcaa tcagacaaca aaaagacatt      4320
     aaaggcattc aaattggcaa agaagaagtc aaactctccc tcttcgccga tgacatgata      4380
     ctctacatag aaaacccaaa agtctccacc ccaagattgc tagaactcat acagcaattc      4440
     ggtagcgtgg caggatacaa aatcaatgcc cagaagtcag tggcatttct atacactaac      4500
     aatgagactg aagaaagaga aattaaggag tcaatcccat ttacaattgc acccaaaagc      4560
     ataagatacc taggaataaa cctcaccaaa gatgtaaagg atctataccc tcaaaactat      4620
     agaacacttc tgaaagaaat tgaggaagac acaaagagat ggaaaaatat tccatgctca      4680
     tggattggca gaattaatat tgtgaaaatg tcaatgttac ccagggcaat atacacgttt      4740
     aatgcaatcc ctatcaaaat accatggact ttcttcagag agttagaaca aattatttta      4800
     agatttgtgt ggaatcagaa aagaccccga atagccaggg gaattttaaa aaagaaaacc      4860
     atatctgggg gcatcacaat gccagatttc aggttgtact acaaagctgt ggtcatcaag      4920
     acagtgtggt actggcacaa aaacagacac atagatcagt ggaacagaat agagaatcca      4980
     gaagtggacc ctgaacttta tgggcaacta atattcgata aaggaggaaa gactatccat      5040
     tggaagaaag acagtctctt caataaatgg tgctgggaaa attggacatc cacatgcaga      5100
     agaatgaaac tagaccactc tctttcacca tacacaaaga taaactcaaa atggatgaaa      5160
     gatctaaatg tgagacaaga ttccatcaaa atcctagaga agaacacagg caacaccctt      5220
     tttgaactcg gccatagtaa cttcttgcaa gatacatcca cgaaggcaaa agaaacaaaa      5280
     gcaaaaatga actattggga cttcatcaag ataagaagct tttgcacagc aaaggataca      5340
     gtcaacaaaa ctcaaagaca acctacagaa tgggagaaga tatttgcaaa tgacatatca      5400
     gataaagggc tagtttccaa gatctataaa gaacttatta aactcaacac caaagaaaca      5460
     aacaatccaa tcatgaaatg ggcaaaagac atgaacagaa atctcacaga ggaagacata      5520
     gacatggcca acatgcatat gagaaaatgc tctgcatcac ttgccatcag ggaaatacaa      5580
     atcaaaacta caatgagata ccacctcaca ccagtgagaa tggggaaaat taacaaggca      5640
     ggaaacaaca aatgttggag aggatgcgga gaaaagggaa ccctcttaca ctgttggtgg      5700
     gaatgtgaac tggtgcagcc actctggaaa actgtgtgga ggttcctcaa acagttaaaa      5760
     atatacctgc cctacgaccc agcaattgca ctgttgggga tttaccccaa agatacaaat      5820
     gcaatgaaac gccgggacac ctgcaccccg atgtttctag cagcaatggc cacgatagcc      5880
     aaactgtgga aggagcctcg gtgtccaacg aaagatgaat ggataaagaa gatgtggttt      5940
     atgtatacaa tggaatatta ctcagctatt agaaatgaca aatacccacc atttgcttca      6000
     acgtggatgg aactggaggg tattatgctg agtgaagtaa gtcagtcgga gaaggacaaa      6060
     cattatatgt tctcattcat ttggggaata taaataatag tgaaagggaa aataagggaa      6120
     gggagaagaa atgtgtggga aatatcagaa agggagacag aacgtaaaga ctgctaactc      6180
     tgggaaacga actaggggtg gtagaagggg aggagggcgg ggggtgggag tgaatgggtg      6240
     acgggcactg ggtgttattc tgtatgttag taaattgaac accaataaaa aaaaaaaa        6298
//
ID   MARINER2    repbase; DNA   ; MAM   ; 1300 BP.
XX
AC   U49974;
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   19-FEB-1997 (Rel. 2.01, Last updated, Version 1)
XX
DE   Mariner2 transposable element, complete consensus sequence.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MARINER2;
KW   terminal inverted repeats; transposase.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Oosumi T., Belknap R.W., Garlick B.;
RT   "Mariner transposons in humans.";
RL   Nature 378, 672-672 (1995).
XX
RN   [2]
RP   1-1300
RA   Robertson M.H., Zumpano L.K., Lohe R.A., Hartl L.D.;
RT   "Reconstructing the ancient mariners of humans.";
RL   Nature Genet 12, 360-361 (1996).
XX
DR   GenBank; U49974; Positions       1    1300.
XX
CC   repeat_region 1..31
CC   repeat_region 1269..1300
CC   /rpt_type=terminal inverted repeat
CC   CDS 182..1237
CC   /codon_start=1
CC   /product="mariner transposase".
XX
SQ   Sequence 1300 BP; 441 A; 241 C; 258 G; 360 T; 0 others;
     caaggggtct tcaaaaagtt catggaaaat gcgtattatg aaaaaactat gcatggattt        60
     caaaattttt tgcaccaaaa taaactcata ctaacttgtt ataacatgtc tgaacaggat       120
     ctagtttgag gcactaagaa ggataagaca tcagtttgaa aagagcccct atcagagcaa       180
     catgaattct gctaaaattg aagcaagaac aaacatcaaa tttatggtga agcttgggtg       240
     gaagaatggt gaaatcattg atgctttacg aaaagtttat ggggacaatg ccccaaagaa       300
     atcagcagtt tacaaatgga taactcgttt taagaaggga caagacaatg ttgaagatga       360
     agcccacagt ggcagaccat ccacatcaat ttgtgaggaa aaaattaatc ttgttcatgc       420
     cctaattgaa gaggaccaac aattaacagc agaaacaata gccaacacca tagacatctc       480
     aattggttca gcttacacaa ttctgactga aaaattaaag ttgagcaaac tttccactca       540
     atgggtgcca aaaccattgc acccagatca gctgcagaca agagcagagc tttcaatgga       600
     aattttaaac aagtgggatc aagatcctga agcatttctt cgaagaattg taacaggaga       660
     tgaaacatgg ctttaccagt acaatcctga agacaaagca caatcaaagc aatggctacc       720
     aagaggtgga agtggtccag tcaaagcaaa agtggactgg tcaagagcaa aggtcatggc       780
     aacagttttt tgggatgctc aaggcatttt gcttgttgac tttctggagg gccaaagaat       840
     gataacatct gcttattatg agagtgtttt gagaaagtta gccaaagctt tagcagaaaa       900
     acgcccggga aagcttcacc agagagtcct tctccaccat gacaatgctc ctgctcattc       960
     ctctcatcaa acaagggcaa ttttgcgaga gtttcgatgg gaaatcatta ggcatccacc      1020
     ttacagtcct gatttggctc cttctgactt ctttttgttt cctaatctta aaaagatctt      1080
     taaagggcac ccatttttct tagttaataa tgtaaaaaag actgcattga catggttaaa      1140
     ttcccaggac cctcagttct ttagggatgg actaaatggc tggtatcatc gcttacaaaa      1200
     gtgtcttgaa cttgatggag cttatgttga gaaataaagt ttatattttt tatttttatc      1260
     ttttaattcc attttccatg aactttttga agtcccctta                            1300
//
ID   CERVSAT     repbase; DNA   ; MAM   ; 1066 BP.
XX
AC   AY064466; AY064467; AY064468; AY064469;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Centromeric repetitive DNA from Cervidae species - a consensus.
XX
KW   Satellite; Simple Repeat; CERVSAT; Centromeric satellite; Cervidae.
XX
OS   Muntiacus muntjak vaginalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Cervidae;
OC   Muntiacinae; Muntiacus; Muntiacus muntjak.
XX
RN   [1]
RA   Li C.Y., Lee C., Chang S.W., Li Y.S., Lin C.C.;
RT   "Isolation and identification of a novel satellite DNA family highly
RT   conserved in several Cervidae species.";
RL   Chromosoma 111(3), 176-183 (2002).
XX
RN   [2]
RA   Kohany O., Jurka J.;
RT   "CERVSAT consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [2] (Consensus)
XX
CC   Average similarity to consensus 94%.
XX
SQ   Sequence 1066 BP; 288 A; 219 C; 242 G; 308 T; 9 others;
     gactgatttc ctgggttaag agccaatttt tacagtttca agrcaaagaa aattcctrct        60
     ggaaggttga tattaggtga ttggrtgggg taccataggg tgtttactgg agtgggcatc       120
     tttgcctggt agggagtcag gaagctcatt agcratgatc aggtkctttt ggcaacagtt       180
     gcaaaggggg cccagtcmga ttcacaggtg accttggttc tgggscccac ttctrtggcc       240
     ttggtgtgag gmctcccagc tgtggccttg gggaaggagt cacctcaaca agactgaccc       300
     tgcttcagag taaaagttcc atcaagtttt ctctgcagga gagatctagt gatcctagat       360
     ctgtttggaa aagtcttgga cactgcaggg acacatactg agtgtgaacc tggatattga       420
     accttgttgg caaaactcac cttttctctc tgttggcatt aaaagggtgt gggctgacag       480
     ctgcctgaga atccatccaa ttgacaattt cctatttaca acataaatga gtttggtcaa       540
     attatttcta tttctatgca aacaggcagc ttgcaactcc ttgtggcagg atcatttcca       600
     atagattgtc aacgaatcaa ggtaacaaca ttatgacact cagcacattt agatataatt       660
     tcctaagcct ttttcctgag ggacagaccc aatatgagct aggaatgtgt tcaaaaggct       720
     cagaaagtgc aggaaaatac actggctatg actggaaatt agggtctctg tgcaaacctg       780
     gagttctgac atcttacaat ctagacagtt cctgatagac agatgcatga aaaacactct       840
     acttttatgt ttttctttca tcaaaggaac atggatttcc tagcattctg tgtgctgaga       900
     gtaactcact gctctaaaat gcttgcttgg acttcatttt cagtaagaac ttcccctgac       960
     tgtgttacag tcaggacggt cccacactca cagggaaaaa caaactaaca tccaaacgtt      1020
     tgttcctcag gttttctctg taggagagat ccagtgatcc taggtc                     1066
//
ID   L2B         repbase; DNA   ; MAM   ; 419 BP.
XX
AC   .
XX
DT   22-AUG-2000 (Rel. 5.07, Created)
DT   22-AUG-2000 (Rel. 5.07, Last updated, Version 1)
XX
DE   3'-end of L2 (LINE2) repeat (subfamily b) - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; L2 (LINE) family;
KW   L2B; LINE2B subfamily; Repetitive sequence.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-419
RA   Smit A.F.;
RT   "L2B..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   Average divergence from consensus 30%.
XX
SQ   Sequence 419 BP; 61 A; 154 C; 88 G; 107 T; 9 others;
     tcccccttgc tcactctgct ccagccacac tggcctcctt gctgttcctc aaacacgcca        60
     ggctctttcc cgcctctggg cctttgcaca tgctgttcyc tctgcctgga acgcccttcc       120
     ccwctccttc ancctggcca actcctactc gtccttcagg kctcagctca ratgtcacct       180
     cctccaggaa gccttccctg acttcccagg ccgagttagg tgccctcctc tgggcccccc       240
     cggtcctacc ctgccactct gggttatmat tgtctgtkng cangtctgtc tcccccactg       300
     gactgtgagc tccgcgaggg cagggactgt gtctgtcttg ttcaccactg tatccccagc       360
     gcctagcaca gtgcctggca catagcaggc gctcagtaaa tgtttgttga atgaatgaa        419
//
ID   BTSAT3      repbase; DNA   ; MAM   ; 173 BP.
XX
AC   J00027;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Bovine 1.706 g/ml satellite, 2350 bp repeat, segment C.
XX
KW   SAT; Satellite; Simple Repeat; BTSAT3; Repetitive sequence;
KW   Satellite repetitive element.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-173
RA   Pech M., Streeck E.R., Zachau G.H.;
RT   "Patchwork structure of a bovine satellite DNA.";
RL   Cell 18, 883-893 (1979).
XX
DR   GenBank; J00027; Positions       1     173.
XX
SQ   Sequence 173 BP; 45 A; 45 C; 38 G; 45 T; 0 others;
     ggcccgtcat gcagtgatca cgtggctatc atgcactact cacttggctg atcatgcaat        60
     gatcatgtag ctaccatgta caggtcatgt gaatgatcat acacccatca ggtgactgat       120
     catgcactga tcacgtggct atcatgcact gatcacgaga ctgatcatgc act              173
//
ID   SINEC2A2_CF repbase; DNA   ; MAM   ; 143 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Young dog SINE element SINEC2A2_CF.
XX
KW   SINE; Interspersed Repeat; SINE element; SINEC2A2_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-143
RA   Jurka J., Gentles A.;
RT   "Young dog SINE element SINEC2A2_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 93%. This sequence, and
CC   SINEC2A1, supersede previous SINEC2_CF.
XX
SQ   Sequence 143 BP; 13 A; 51 C; 44 G; 35 T; 0 others;
     gggatccctg ggtggcgcag cggtttggcg cctgcctttg gcccagggcg cgatcctgga        60
     gacccgggat cgaatcccac atcgggctcc cggtgcatgg agcctgcttc tccctctgcc       120
     tgtgtctctg cctctctctc tct                                               143
//
ID   BDDF2       repbase; DNA   ; MAM   ; 3806 BP.
XX
AC   Z25531;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   BDDF repeat unit containing internal inverted sequences.
XX
KW   BDDF2; BTBDDF2; Repeat region.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-3806
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Evidence for homological recombination with participation of the
RT   bovine alu-like sequences.";
RL   Unpublished.
XX
RN   [2]
RP   1-3806
RA   Plucienniczak A.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (12-AUG-1993). PLUCIENNICZAK
RL   A., PP TERPOL, LABORATORY OF GENETIC ENGINEERING, P.O.W. 57, SIERADZ,
RL   POLAND, 98-200.
XX
DR   GenBank; Z25531; Positions     484    4289.
XX
SQ   Sequence 3806 BP; 1028 A; 816 C; 888 G; 1074 T; 0 others;
     ccgactgagt gacttcactt tcacttttca ctttcatgca ttggagaagg aaatggcaat        60
     ccactccagt tttcttgcct ccagaatcgg gaggggggga cctggtgggc tgccatctat       120
     ggggtcgccc agagtcggag agaactgcag cgaagcagca gcagcagcag cagggttagt       180
     tgatcgctga ggaagccttt cttatctctc cttgctattc tttggaactc tgcattcaga       240
     tgcttatatc tttccttttc tcctttgctt ttcacttctt ttcacagcta tttataaggc       300
     ctctcagaca gccattttgc ttttttgcat ttcttttaca tggggatggt cttgatccct       360
     gtctcctgta caatcacaaa cttccgtcca tagttcatca ggcactttgt ctagcagata       420
     tagtccctta aatctatttc ttccactgta taatcacaag gggtttgatt taggtcatac       480
     ctgaatggtc tagtggtttt ccctacttca atttaagtct gactttggca atacggagtt       540
     catgatctga gccacagtca gcttctggtc ttgtttgctg actgtataga gcttctccat       600
     ctttggctgc aaagaatata atcaacctga tttcggtgtt gccatctggt gaagtccatg       660
     tgtagagtct tcttttgtgt tgttggaaga gggtgtttgc tatgaccagt gcattctctt       720
     ggcaaaactc tattgatctt tgccctgctt cattctgtat gccaaggcta aatttgcctg       780
     ttaccccagg tgtttcttga cttcctactt ttgcattcca gtcccctata atgaaaagga       840
     catctttttt gggtgttagt tctaaaaggc ttgtagattt tcatagaact gttcaacttc       900
     agcttcttta gcgttactgg ttggggtgta ggcttggatt actgtgatat tgaatggttt       960
     gccttggaaa cgaacagaga tcattctgtc gtttttgaga ttgcatccaa gtactgcatt      1020
     tcggactctt gttgaccatg atggctactc catttcttct gagggattcc tgcccgcagc      1080
     agtagatata atggtcatct gagttaaatt cacccattcc agtccatttg agttctctat      1140
     tcctagaatg tcaacgttca ctcttgccag ctcctgtttg accacttcca atttgccttg      1200
     attcatggac ctgacattcc aggttccttt gcaatattgc tctaaacagc gttggacctt      1260
     gcttatatca cgcttcacag ccagaactgg gtattgctaa tgctttggct ccatcctttc      1320
     actcaatctg gaattatttc tgctgtgatc tccagaacga tcttaagcac ctatcgacct      1380
     ggggagttcc tagttgagta tcctatcatt ttgccatttc atgtgttcta gaggttctca      1440
     aggcaagttt agtgaagtgg tttgggattc caatttccag tggaccacat tctgttagac      1500
     ctggggtcca ggacccatct gtcttgggtg gcgctaaaag gcatggctta gccaggttga      1560
     gttaatcacg gcactggtcc gtgtgatcaa attggctaga ggattctgtg attatttcca      1620
     gtgtctggtg ccctcggatg acccctcgca acacccagtc ttgggttttc ttttatcttg      1680
     gacatggggt atctcttcac ggctgctcca gcaaagtgca gccactgctc cttaccttgg      1740
     acaaatcgcc cctcctaacc ttgaacatgg ggttgctcct cttgtccacc acccctggcc      1800
     tcagacgtgg ggtagctctt cttgttcgcc gcccctgaac tcggacgtgg gttagctcct      1860
     cttggccacc acccctgacc tcagatttgg gtagctcgcc ttggctactg ctactgacct      1920
     tagatgtggg gtagctcctc tcggccactg cccctgacct tggatgtggg gtagctcctc      1980
     tcgggcgcac ttgtgctatc gcagcctgat gcagagttcc aaagaatagc aaggagagat      2040
     aagaaagcct tcctcagcaa tcaatgcaaa gacatagaga aaaacaacag aatgggaaag      2100
     actagagatc tcttaaagaa aattagagat accaagggaa catttcatgc aaagatgggc      2160
     ttgataaagg acagaaatgg tatggaccta acagaagctg agatattaag aagaggtggc      2220
     aagaatacac agaagaactg tacaaaaaag atcttcacaa ccaagataat cacgatggtg      2280
     tgatcactca cttatagcca gacatcctgg aatgtgaagt taagagggcc gtagaaagca      2340
     tcactatgaa caaagctagt ggaggtgatg gaattccagt ggagctattt caaatcctga      2400
     aagatgatgc tttgaaagtc ctgcactcaa tatgccagca agtttggaaa actcagcagt      2460
     ggccacagga ctggaaaagg tcagttttca aactaatccc agagaaaggt aatgccaaag      2520
     aatcatcaaa ctaccacaca attgcactca tctcacacgc tagtaaagta atgctcaaaa      2580
     ttctccaagc caggcttcag caatatgtga actctgaact tcctgatgtt caagctggtt      2640
     ttagaaaaag cagaggaacc agagatcaaa ttgcccaaca tctgctggat catggaaaaa      2700
     gcaagagatt tccagaaaaa catctatttc tgctttattg actatgccaa agcctttgac      2760
     tgtgtggatc acaacaaact gtggaaaatt ctgaaagagg tgggaataac cagaacacct      2820
     gaccatgctc tttgagaaac ctgtatacag gtcaggaagc aacagttaga actggacatg      2880
     gaacaacaga ctggttcgaa ataggaaaag gagtatgtca aggctgtata ttgtcaccct      2940
     gtttatttaa cttatatgca gagtacatca tgagaagagc tggactggaa gaaacacaag      3000
     ccggaatcaa gattgccggg agaaatatca ataacctcag atatgcagat gacaccaccc      3060
     ttatggcaga aagtaaagag gaactaaaaa gcctcttgat gaaagtgaaa gaggagagtg      3120
     aaaaagttgg cttcaagctc aacattcaga aaatgaagat catagcaacc ggtcccctca      3180
     cttcatggga aaaaatagat ggggaaacag tggaaacagt gtcagacttt atttttctgg      3240
     gctcaaaaat cactgcagga tggtgactgc agccatgaaa ttaaaagaca cttactcctt      3300
     tggaaggaaa gttatgacca acctagatag catattgaaa agcagagaca ttactttgcc      3360
     aacaaggtca aggctatggt ttttccagtt gtgttgtacg gatgtgagag ttggactatg      3420
     aagaaagctg agtgccgaag aattgatgct tttgaactgt ggtgttggag aagactcttg      3480
     agagtccctt ggactgcaag gagatccaac cagtccattc taaaggagat cagtcctggg      3540
     tgttcattgg aaggactgat gctgaagctg aaactgcagt actttagcca cctcatgaga      3600
     aaatatgacc tcattggtaa agactctgat gctgggaggg atattttttg ggggcaggag      3660
     gggacgatag aggatgagat ggctggatgg catcactcac tcgatggcat tgtttgacgg      3720
     tgaactctgg gagttggtga tggacaggcg cctggaaagc tgtgattcat ggggtcacaa      3780
     agagtcagac gcgactgggt gactga                                           3806
//
ID   C_OC        repbase; DNA   ; MAM   ; 1965 BP.
XX
AC   M63140;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Rabbit C repetitive sequence.
XX
KW   C_OC; OCC; Repetitive element.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RA   Krane E.D., Clark G.A., Cheng F.J., Hardison C.R.;
RT   "Subfamily relationships and clustering of rabbit C repeats.";
RL   Mol. Biol. Evol 8, 1-30 (1991).
XX
DR   GenBank; M63140; Positions       1    1965.
XX
SQ   Sequence 1965 BP; 452 A; 572 C; 529 G; 412 T; 0 others;
     cccctggttg gccctggctt cctgagtcct gcaggctggc caggagcttg ctgtgtgccc        60
     aggcctctgg catctccctc gtcgcacggc tggcaccctg gaactggccc ctgtcctagt       120
     cagacgcgcc cagactcctg ctgaagtgcc atggaggcac catcgggcgt ccagcctggc       180
     ccaaccccag cacaagcctg gcacagccct cgtagcactc tgggcagtgt caggccctgg       240
     cactgttctc tgccatggcc ccggctgacg cgttggcagc tcccattccc accaccaact       300
     ccccctgcac agccccatcc atcttcactc aatatagaaa aacatatgaa gaaataacca       360
     ggggcccgag ctgcaggctc actaggctaa tcctctgctt agcagggacg ttagattcat       420
     gtcccgggtg cccctcttcc atcccagctc tctgctgtgg cccaggagcg cagtggagaa       480
     tggcccaggt cctggggccc tgcacccaca tgggaggcct gcaggaggca tctgactgtt       540
     ggcttcggat cagtgcagca caccggccgt agcggcactt gggggtgaac caacagaaat       600
     ggaagacctt tctctctctc tctctcatga actctgcccg tccaaaaaag aaaaaaaaag       660
     aaaaaaaaaa aaaagaaaga aagaaacaaa gaaataacca ggggtgggtg ttggcacagt       720
     gagaatcgca cacccacatc cctgagtgcc gtggttcttg tcctcggtcc attgcgtcga       780
     gatccatttc ttcgcaatcg accctggaag aggaggatga tccaaggact tgggttcctg       840
     acaggcactg gagacactgg ctcccggctt aggccagcac agcagctgga gctgttgcag       900
     ctctttggga aatgaaccag tgggtgggag tgctacctcc cttactctct tctctctgcc       960
     tttcaaatac agaaacatct tgagaagaga gagacagaga caggatgcag gcttgtgtgg      1020
     cccctgatga agcgcccttg ggaggcctgc atgtcgtacc agagtgcccg ttgaagccct      1080
     gctgcttccc tccctcagct ccctgggatg cagtgggtga cgacccctgc acttagggcc      1140
     ctgccaccca ggtgcgaccc ggatggagtt cctcctgttg cccagctcag cccagtgaaa      1200
     gcatatgggg agtgaagtag cagatgggag accaatccga ggacttccct atctttgtgt      1260
     cactctgcct ttcaaatcag tacataaata aatcattaag aaccaaacaa aaatgaagag      1320
     gaattttttt ctgatttatt tgagaggcag aataatagag aggaagagtc agagagacag      1380
     agatcttcca cctgctggtt cactccccaa aaggctgcaa tggccagagc tgggcctgtt      1440
     tggagccagg agccaggagc ttcttctggg tctcccacat gggaggaggg ctccaaacac      1500
     ttgggctgtc ttccactgct ttcccaggca cattagcaga gagctggacc agagcagagc      1560
     agcaaggacc agaactggtg cccctatggg atgccacagc tgcaggtggc agctttaccc      1620
     acagggcaac agatccagcc cacatcaaat tttcaaatga gcacagcatg gggttgctgt      1680
     catggcacag ggccctgtgc ttagccgcct gcacctgcat caaactgagt ccctggcagc      1740
     tccacctctg accagctcca tgctaccagc ctgggaaagg catggggagg tggccccaag      1800
     tgtttgggag acctgggtgg agcccctgct cctggcttca gcctgggtca gctaaggcct      1860
     ttgtggcagc agagctgtgg gccggcagat ggaggagctc tctcttctgt ctctgcctct      1920
     ctcttggagt ctttcactaa tgataaataa tttcagcaaa cactt                      1965
//
ID   NLA         repbase; DNA   ; MAM   ; 230 BP.
XX
AC   M57436;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Goat Nla repeat.
XX
KW   NLA; Nla repeat.
XX
OS   Capra hircus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Caprinae; Capra.
XX
RN   [1]
RP   1-230
RA   Li Q., Zhou B., Powers A.P., Enver T., Stamatoyannopoulos G.;
RT   "Primary structure of the goat beta-globin locus control region.";
RL   Genomics 9, 488-499 (1991).
XX
RN   [2]
RA   Li Q., Zhou B., Powers A.P., Enver T., Stamatoyannopoulos G.;
RT   "Beta globin locus activation region: Conservation of organization,
RT   structure and function.";
RL   Proc. Natl. Acad. Sci. U.S.A 87, 8207-8211 (1990).
XX
DR   GenBank; M57436; Positions    9657    9886.
XX
SQ   Sequence 230 BP; 69 A; 58 C; 60 G; 43 T; 0 others;
     ttggggcttc ccatgtggta ctagaggtaa aagaacccac cttcaataca ggagacttaa        60
     gagatacgca ttctgtcccc aggtggggaa gattccccca gaggagggca tggcaactca       120
     gccaagtatt cttgcctgga gaatcccatg gacagaggag ccaggcggct acagtccata       180
     gagtctcata gactcagaca tgactaaagc aacttagcaa ggcacagcac                  230
//
ID   MSTC        repbase; DNA   ; MAM   ; 428 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Long terminal repeat (MSTC subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; LTR; MSTC;
KW   retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
RN   [2]
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (FEB-2000).
XX
CC   [2] (Consensus)
XX
CC   LTR of MSTC retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 17%. Intermittant subfamily
CC   between MSTB1 and MSTD; 75% similar to MSTB1 over the entire length.
XX
SQ   Sequence 428 BP; 114 A; 97 C; 104 G; 113 T; 0 others;
     tgctatggtt tgaatgtttg tcccctccaa aactcatgtt gaaacttaat ccccaatgtg        60
     gcagtattga gaggtggggc ctttaagagg tgattgggtc atgagggctc tgccctcatg       120
     aatggattaa tccattcatg gattaatgga ttaatggatt aatgggttat catgggagtg       180
     ggactggtgg ctttataaga agaggaagag agacctgagc tagcatgctc agccccctcg       240
     ccatgtgatg ccctgcgcca ccttgggact ctgcagagag tccccaccag caagaaggcc       300
     ctcaccagat gcggcccctc gaccttggac ttcccagcct ccagaactgt aagaaataaa       360
     tttcttttct ttataaatta cccagtctca ggtattctgt tataagcaac agaaaatgga       420
     ctaagaca                                                                428
//
ID   ES22        repbase; DNA   ; MAM   ; 471 BP.
XX
AC   .
XX
DT   27-NOV-2001 (Rel. 6.1, Created)
DT   27-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Equus caballus satellite ES22 sequence - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; ES22; satellite DNA.
XX
OS   Equus caballus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Perissodactyla; Equidae; Equus.
XX
RN   [1]
RA   Gallagher C.P., Lear L.T., Bailey E.;
RT   "Sequence characteristics and chromosomal distribution of a DNA
RT   satellite, ES22, in genomes of the horse and other equids.";
RL   Unpublished.
XX
RN   [2]
RP   1-471
RA   Jurka J.;
RL   Direct Submission to Repbase Update (26-NOV-2001).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 471 BP; 49 A; 114 C; 192 G; 110 T; 6 others;
     tccggcacgt gttctggacg tctggaggtg tccggcatgc ggcaggtatt cggagtgtcn        60
     gccaagtggt ctggcgtagc cggcaggtnn tttngcgtgt ccggcaggtg gttccggcga       120
     gtcgagcagg tggttccggc gtgtccggca ggtggttctg gcangtctgg caggtggttc       180
     cggcatgctc ggcaggtgat tccggagtgt ccggcacgtg gttctggcac gtctgagagg       240
     tggttccggc atgcccggca ggtgattccg gagtgtccgc caagtggttc tggcgtagcc       300
     ggcaggtgat tttggcgtgt ccggcaggtg gttccggcga gtcgagcagg tggttccggc       360
     atgctcggca ggtggttccg gcgtgtccgg caggtggttc tggcgtgtcc gacaggtggt       420
     tccggcatgc ccggcaggtg attccggagt gtccgncagg tggttctggc g                471
//
ID   L1MA9       repbase; DNA   ; MAM   ; 1059 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   23-JUN-2000 (Rel. 5.05, Last updated, Version 4)
XX
DE   3'-end of L1 repeat (subfamily L1MA9) - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat; L1 (LINE) family;
KW   L1M2; L1MA9; L1MA9 subfamily; MER32; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-1059
RA   Smit A.F., Toth G., Riggs D.A., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive
RT   sequences..";
RL   J. Mol. Biol 246, 401-417 (1995).
XX
RN   [3]
RP   1-1059
RA   Smit A.F.;
RT   "Direct submission..";
RL   Direct Submission to Repbase Update (03-MAY-2000).
XX
CC   [3] (Consensus)
XX
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 15%.
XX
SQ   Sequence 1059 BP; 410 A; 167 C; 214 G; 267 T; 1 others;
     ttaatatcca aaatatataa ggaactcaaa caactcaata gcaaaaaaac aaataacccg        60
     attaaaaaat gggcaaagga cctgaataga catttctcaa aagaagacat acaaatggcc       120
     aacaggtata tgaaaagatg ctcaacatca ctaatcatca gggaaatgca aatcaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaagataac       240
     aagtgttggc gaggatgtgg agaaaaggga acccttgtac actgttggtg ggaatgtaaa       300
     ttggtacagc cattatggaa aacagtatgg aggttcctca aaaaattaaa aatagaacta       360
     ccatatgatc cagcaatccc acttctgggt atatatccaa aggaaatgaa atcagtatct       420
     cgaagagata tctgcactcc catgttcatt gcagcattat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc gacggatgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatatt attcagcctt aaaaaagaag gaaatcctgc catttgtgac aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     atctcactta tatgtggaat ctaaaaaagt caaactcata gaagcagaga gtagaatggt       720
     ggttgccagg ggctgggggg tgggggaaat ggggagatgt tggtcaaagg gtacaaagtt       780
     tcagttatgc aggatgaata agttctggag atctaatgta cagcatggtg actatagtta       840
     ataatactgt attgtatact tgaaatttgc taagagagta gatcttaagt gttctcacca       900
     cacacaaaaa aatggtaact atgtgaggtg atggatatgt taattagctt gattgtggta       960
     atcatttcac aatgtatacg tatatcaaaa catcacgttg tacaccttaa atatatacaa      1020
     tttttatttg tcaattatac ctcaataaag ctggaaaaa                             1059
//
ID   MER82       repbase; DNA   ; MAM   ; 653 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   MER82 repetitive element - a consensus.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; MER2 family;
KW   MER82; Putative non-autonomous DNA transposon.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-653
RA   Smit A.F.;
RT   "MER82..";
RL   Direct Submission to Repbase Update (1997).
XX
CC   [1] (Consensus)
XX
CC   MER82 has 20 bp terminal inverted repeats quite similar to those of
CC   Tigger2. It is flanked by TA duplication sites.
XX
SQ   Sequence 653 BP; 200 A; 139 C; 132 G; 176 T; 6 others;
     cagttgatcc tcattatcca cagtagttat gttctataaa gtcaccgcga gcactgaatt        60
     agcgaatact gaaccatcgc tcctagagga aatacagagt taggttcctg caagcctctg       120
     gtcacaacat tttcatcaac cgatcaatat ataacyttgt tttatgtgtg tttctgttta       180
     aagacnnctt atttaatata tattgttgat ttattaacac tgaactcaca gccaacagca       240
     ctataactca tgcctgaatg aagcttatct aacacacata ttttctccat aaggtacatc       300
     acagccttct tgtgcttagg aacaccagac agcacttcag cactatgctc ggggccattt       360
     taaacggcga aatcaccaac aaaaagcaca aaaatgtgaa aaacgtggca ctaaatagac       420
     ctcgaaaagg acgcttgttt acggtatgag agctgaaaca agaaggcaga gcgtcgcctt       480
     gttcgacctc agctgggaac gtgcacgtcg ggcgactcga atttttcgct gctctgcgca       540
     tgtntgcaaa tgaccgngaa agtgctncaa gtattgattt tggggttaca aataaatttt       600
     agcgagtagg cgaattcgca aatacggaat ccgtggataa tgaggattga ctg              653
//
ID   SATIA_MM    repbase; DNA   ; MAM   ; 807 BP.
XX
AC   X02323;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Muntjak satellite IA sequence.
XX
KW   SAT; Satellite; Simple Repeat; MMSATIA; Repetitive sequence; SATIA_MM;
KW   satellite DNA.
XX
OS   Muntiacus muntjak vaginalis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Cervidae;
OC   Muntiacinae; Muntiacus; Muntiacus muntjak.
XX
RN   [1]
RP   1-807
RA   Bogenberger M.J., Neumaier S.P., Fittler F.;
RT   "The Muntjak satellite IA sequence is composed of 31-base-pair
RT   internal repeats that are highly homologous to the 31-base-pair
RT   subrepeats of the bovine satellite 1.715.";
RL   Eur. J. Biochem 148, 55-59 (1985).
XX
DR   GenBank; X02323; Positions       1     807.
XX
SQ   Sequence 807 BP; 214 A; 231 C; 196 G; 166 T; 0 others;
     tcccagtggc aaaaggaaag ggaacctgcg tctgccgcct cacctcgaga ggttttccta        60
     tggccctttc aagccaagaa gagactcccg aggcgtccct cgcaaataga caggagtcct       120
     tacgtcactg aagcacaccg tgtttggaag ggccatcccc gccgtaactc gagaatatac       180
     cccaggttcc cgccgcaact cgagaaaaac gatgagactc ccccctcgcc gcgagttgag       240
     gcccgatttc actgcacagc atgcagagca attgcctgct ccccatcaaa cccgaaagga       300
     gccttgattt ccttgatggc atccttagat ggcatcctta gaaaccccag gtacactgtc       360
     tcaagtctag aggtatccta aagtcacttc accaaccaga aacagctcct gtattccgaa       420
     tcatctcgag ctgagagctg atttcctggc ttcaaatcaa gaggaatgcc aactgtccac       480
     aagcaccaca agaggaggct tctcgcagct gtaggtctgg ttgagggaag tttgaatttg       540
     cggcctccag tggaatcgac cccgagatgc cctgactcga aatcaggacg gaattcctgc       600
     agtgacttga gtgcaagctg gatttcatct cacaagatga agggatgtcg gaagcccctt       660
     gggagacact agataatgcc ctagcacaat gccctttctc gacaggcggc ctcccatcca       720
     ttggacagct tgagaggaac acggagttca atgattccaa aggacacgat gcctgactcc       780
     tctggaaaat ggacaggaat cccagga                                           807
//
ID   L2A         repbase; DNA   ; MAM   ; 3314 BP.
XX
AC   .
XX
DT   22-AUG-2000 (Rel. 5.07, Created)
DT   22-AUG-2000 (Rel. 5.07, Last updated, Version 1)
XX
DE   L2A (MIR2/LINE2) non-LTR retrotransposon - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; L2 family; L2A;
KW   LINE; LINE2; MIR2; MIR2/LINE2.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   3265-3314
RA   Degen J.S., Davie W.E.;
RT   "Nucleotide sequence of the gene for human prothrombin..";
RL   Biochemistry 26, 6165-6177 (1987).
XX
RN   [2]
RP   3165-3314
RA   Smit A.F., Riggs D.A.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation..";
RL   Nucl. Acids. Res 23, 98-102 (1995).
XX
RN   [3]
RP   565-3314
RA   Smit A.F.;
RT   "L2A..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [4]
RP   1-3314
RA   Smit A.F.;
RT   "L2A..";
RL   Direct Submission to Repbase Update (1999).
XX
CC   [4] (Consensus)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
CC   This is a consensus sequence for LINE2 subfamily A. The MIR SINE
CC   shares the 3' terminal 50 bp and was co-amplified with LINE2. The 5'
CC   end is probably still incomplete. The ORF from bp 189-2691 encodes a
CC   product 59% similar (39% identical) to the reverse-transcriptase-like
CC   protein of a LINE-like element in pufferfish (GenBank acc# AAD19348).
CC   Note that, whereas L1 is A- and purine rich in the coding strand, L2
CC   is C- and pyrimidine (65%) rich.
CC   There may be more than 300,000 copies of LINE2 in our genome. LINE2
CC   spread before the mammalian radiation, and copies are only 65-75%
CC   similar to this consensus sequence.
XX
SQ   Sequence 3314 BP; 706 A; 1249 C; 420 G; 915 T; 24 others;
     ccctccgcaa gagtaaagag ggagccccaa aactcacccc tcccnnaccc ctcagcactc        60
     acagcctctc caccactatc tgccttgaga ccaccgggac taatctcatc atgcccttta       120
     tccctgttta tgtcagtcac cacaagaagc ccaagactcc caggtcatcc ctcacccccc       180
     acgcttgaat ccccatnagg ctctgtacat ctccttttct gaccccatct cccatccctc       240
     cccanctcct gaaacccttc cactgngccc tctggaactc acggtcmatc atcagcaaaa       300
     tcccccgtat cctcaacctc ttctctgaac gttcccttca ccttcttgct ctaacngaaa       360
     cctggctctc ccctgaggac actgcttccc ctgcagcctt ctcaagtggt ggccgttttc       420
     tctcccacan ccctcgtacc actgggcctg gaggtggggt aggtgtcctc cttgctcctc       480
     attgctgctt ccagaccatt ctccctccct cctccctaaa acaccccagc tttgaatctc       540
     atgtcatcag actacatcac ccgctacccc tccttgttgc agtcatctac ngacctccgg       600
     gtcactcccc ctcattcctt gaagatttta gctcctggct cactgtcact ctctccaaca       660
     ctactcctgt cntaattctt ggtgatttca atatccacat agatgatcct tccaataccc       720
     tggcctctca gttccttgac ctcctctcct ccaatgatct tgtcctccac cctacctcag       780
     ccactcactc ccatggtcat accctagacc ttgtcattac caataactgc aacccctcca       840
     taatctcaat ttcaagcatc ccactctctg accaccacct cctatctttc cagctcactc       900
     cctctagtac cctaactcca acaattcttc gaccccaccg ggacctccaa tccattgatc       960
     ctaccacctt ttcactgtcc ctcacccccc tnatgtcctc acttccctcc ttacccagct      1020
     taaattccat ggtcaatcat tataatcact cccttgcata taccctcaac tcccttgccc      1080
     ctctctcgct tcgtcntact cgcctggcaa aaccacaacc ctggttaaat ccaactctcc      1140
     gcctactccg cgcctgcacc cgtgcagctg aacgtggctg gagaaaaaca cacaaccatg      1200
     ctgactggtc tcgctttaaa ttcatgacca cgaacctcaa gtgggccctt aatgctgccc      1260
     ggcaatcata ctacatttcc ctagtccatt cactctccca ctctcctaga tnactatttc      1320
     acaccttctc ctctctcctc aaacctccaa cacctcctcc cctatcctca ctctcagctg      1380
     atgaccttgc ttcctatttc actgagaaaa twgaagcaat cagaagagaa cttccacana      1440
     ctcccaccac cacatctacc cacctacctg catctgtgcc cacatactct gccttccttc      1500
     ctgttactac ggatgaactg tccgtgctcc tatctaaggc caacccctcc acttgtgcac      1560
     tagatcccat cccctctcgc ctactcaagg acatcgctcc agcaattctc ccctctctct      1620
     cctgcatcat caatttttcc ctctctactg gatcattccc atcagcatac aaacatgctg      1680
     ttatttctcc catctttaaa aaacaaaaat tctcccttga ccccacttcc ccctccagct      1740
     accgccccat ttctctgctc ccctttacag caaaactcct caaaagagtt gtctatactc      1800
     gctgtctcca attcctctcc tcccattctc tcttaaaccc actccaatca ggctttcgtc      1860
     cccaccactc caccgaaact gctcttgtca aggtcaccaa tgacctccat gttgctaaat      1920
     ccaatggtca attctcagtc ctcatcttac ttgacctatc agcagcattt gacacagttg      1980
     atcactccct ccttcttgaa acactttctt cacttggctt ccaggacacc acactctctt      2040
     ggttttcctc ctacctcact ggccgctcct tctcagtctc ctttgctggt tcctcctcat      2100
     ctccccgacc tctnaacgtt ggagtgcccc agggctcagt ccttggacct cttctcttct      2160
     ctatctacac tcactccctt ggtgatctca tccagtctca tggctttaaa taccatctat      2220
     atgctgatga ctcccaaatt tatatctcca gcccagacct ctcccctgaa ctccagactc      2280
     gtatatccaa ctgcctactc gacatctcca cttggatgtc taataggcat ctcaaactta      2340
     acatgtccaa aactgaactc ctgatcttcc ccctcaaacc tgctcctccc acagtcttcc      2400
     ccatctcagt taatggcaac tccatccttc cagttgctca ggccaaaaac cttggagtca      2460
     tccttgactc ctctctttct ctcacacccc acatccaatc catcagcaaa tcctgttggc      2520
     tctaccttca aaatatatcc agaatccgac cacttctcac cacctccact gccaccaccc      2580
     tggtccaagc caccatcatc tctcgcctgg attactgcaa tagcctccta actggtctcc      2640
     ctgcttccac ccttgccccc ctncagtcta ttctcaacac agcagccaga gtgatccttt      2700
     taaaacataa gtcagatcat gtcactcctc tgctcaaaac cctccagtgg cttcccatct      2760
     cactcagagt aaaagccaaa gtccttacag tggcctacaa ggccctacat gatctggtcc      2820
     cccgttacct ctctgacctc atctcctacc actctccccc tcgctcactc cgctccagcc      2880
     acactggcct ccttgctgtt cctcgaacac gccaggcacg ctcctgcctc agggcctttg      2940
     cacttgctgt tccctctgcc tggaacgctc ttcccccaga tatccacgtg gctsgctccy      3000
     tcacctcmtt caggtctcwg ctcaaatgtc acctcctcag agaggccttc cctgaccacc      3060
     ctatctaaaa twgcacaccc tctcccccat catgcccatc tttcttaccc cgctttattt      3120
     ttcttcatag cacttatcac catctgacat actatatwat ttatttgttt gtttgtttat      3180
     tgtctcctcc actagaatgt aagctccatg agggcaggga ctttgtctgt tttgttcact      3240
     gctgtatccc cagcgcctag macagtgcct ggcacatagt aggcgctcaa taaatatttg      3300
     ttgaatgaat gaat                                                        3314
//
ID   SINE1A_SS   repbase; DNA   ; MAM   ; 131 BP.
XX
AC   .
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   SINE-like element from pig - a consensus.
XX
KW   SINE1; SINE; Interspersed Repeat; SINE retrotransposon; SINE1A_SS;
KW   SINE1_SS.
XX
OS   Sus scrofa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RA   Kohany O., Jurka J.;
RT   "SINE1A_SS consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 84%.
XX
SQ   Sequence 131 BP; 29 A; 34 C; 40 G; 28 T; 0 others;
     gggagttctc ttgtggcaca gcaggttaag gatccagcgt tgtcactgca gtggcttggg        60
     tcgctgctgt ggcacgggtt caatccctgg cccaggaact tccacatgcc acgggcatgg       120
     ccaaaaaaaa a                                                            131
//
ID   CHESHIRE_A  repbase; DNA   ; MAM   ; 224 BP.
XX
AC   .
XX
DT   13-AUG-1998 (Rel. 3.07, Created)
DT   13-AUG-1998 (Rel. 3.07, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon; HAT superfamily - a consensus.
XX
KW   hAT; DNA transposon; Interspersed Repeat; CHESHIRE_A;
KW   DNA transposon fossil; hAT superfamily; MER58A.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1
RA   Kapitonov V.V., Jurka J.;
RT   "CHESHIRE_A..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [2]
RP   1-224
RA   Kapitonov V.V., Jurka J.;
RT   "CHESHIRE_A..";
RL   Direct Submission to Repbase Update (AUG-1998).
XX
CC   [2] (Consensus)
XX
CC   CHESHIRE_A is a nonautonomous derivate of CHASHIRE transposon.
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
CC   Original orientation [1] has been changed accordingly to the
CC   internal sequence [2].
XX
SQ   Sequence 224 BP; 57 A; 56 C; 51 G; 60 T; 0 others;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtaaat        60
     aaagttttat tggaacacag ccacgcccat tcgtttatat attgtctatg gctgcttttg       120
     cgctacaacg gcagagttga gtagttgcga cagagaccgt atggcccgca aagcctaaaa       180
     tatttactat ctggcccttt acagaaaaag tttgccgacc cctg                        224
//
ID   ZOMBI_C     repbase; DNA   ; MAM   ; 333 BP.
XX
AC   .
XX
DT   13-JAN-2000 (Rel. 5, Created)
DT   13-JAN-2000 (Rel. 5, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat, non-autonomous DNA transposon - a
DE   consensus.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; Non-autonomous; MER46;
KW   Mariner/Tc1; ZOMBI; ZOMBI_C; non-autonomous DNA transposon.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RP   1-333
RA   Jurka J., Kapitonov V.V.;
RT   "ZOMBI_C..";
RL   Direct Submission to Repbase Update (MAY-1998).
XX
CC   [1] (Consensus)
XX
CC   Subfamily of non-autonomous ZOMBI transposons.
CC   26 bp terminal inverted repeats, TA target site duplication.
CC   ZOMBI_C is 72% identical to ZOMBI_B.
CC   Individual copies are about 81% identical to the consensus.
XX
SQ   Sequence 333 BP; 109 A; 62 C; 52 G; 110 T; 0 others;
     caggtccaca atcccttatc tacaattcta aaatccaaaa agctctgaaa actaaaagtt        60
     tttttataat ttgaaactca tttggcagca aaacctgacc tgaactgata tgaggctatt       120
     tatagtcttt atttatccca cttagtgtga atattcatat atttcactgc agaaatatta       180
     atgtgtttga ttatagggtg ctgccccaga ccccactggg ggtgttatat aatatatagt       240
     atatgcacta tattaccttt ctaaaatcta aaaaattctg aattctgaaa cacatctggc       300
     cccaaggatt tcagataagg gattgtggac ctg                                    333
//
ID   MLT1B       repbase; DNA   ; MAM   ; 390 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   24-JUL-2000 (Rel. 5.06, Last updated, Version 4)
XX
DE   Mammalian long terminal repeat (MLT1B subfamily) - a consensus.
XX
KW   ERV3; Endogenous Retrovirus; Interspersed Repeat; MER15; MER18; MLT1B;
KW   retrovirus-like MaLR element.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [2]
RA   Smit A.F.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21, 1863-1872 (1993).
XX
CC   [2] (Consensus)
XX
CC   LTR of MLT1B retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 16%.
CC   Replaces MER15 (acc.# X59019) and MER18 (acc.# X59024).
XX
SQ   Sequence 390 BP; 123 A; 84 C; 92 G; 91 T; 0 others;
     tgttatgggc tgaattgtgt ccccccaaaa ttcatatgtt gaagtcctaa cccccagtac        60
     ctcagaatgt gactgtattt ggagataggg tctttaaaga ggtaattaag ttaaaatgag       120
     gtcattaggg tgggccctaa tccaatatga ctggtgtcct tataagaaga ggagattagg       180
     acacagacac acacagaggg aagaccatgt gaagacacag ggagaagacg gccatctaca       240
     agccaaggag agaggcctca gaagaaacca accctgccga caccttgatc tcggacttcc       300
     agcctccaga actgtgagaa aataaatttc tgttgtttaa gccacccagt ctgtggtact       360
     ttgttatggc agccctagca aactaataca                                        390
//
ID   MER28       repbase; DNA   ; MAM   ; 434 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 1.09, Created)
DT   18-APR-1997 (Rel. 2.03, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   DNA transposon; Interspersed Repeat; MER28; Repetitive sequence.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Jurka J., Kaplan J.D., Duncan H.C., Walichiewicz J.,
RA   Milosavljevic A., Murali G., Solus F.J.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats..";
RL   Nucleic Acids Res 21, 1273-1279 (1993).
XX
RN   [2]
RP   1-434
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome..";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
CC   [2] (Consensus)
XX
CC   Internal deletion product of Tigger2 element.
CC   24 bp terminal inverted repeats, TA target site.
XX
SQ   Sequence 434 BP; 115 A; 96 C; 80 G; 138 T; 5 others;
     cagttgaccc ttgaacaaca tgggtttgaa ctgcgtggrt ccacttatac gcggattttc        60
     ttccatctct gccaccctga gacagcaaga ccaacccctc ctcctcctca gcctactcaa       120
     cntgaagacg angaggatga agacctttat gatgatccac ttccacttaa tgaatagtaa       180
     atatattttc tcttccttat gattttctta ataacatttt cttttctcta gcttacttta       240
     ttgtaagaat acggtatata atacatataa catacaaaat atgtgttaat cgactgttta       300
     tgttatcggt aaggcttcca gtcaacagta ggctattagt agttaagttt tkggggagtc       360
     aaaagttata cgtggatttt tnactgcgcg gggggtcagc gcccctaacc cccgcgttgt       420
     tcaagggtca actg                                                         434
//
ID   ERE1        repbase; DNA   ; MAM   ; 230 BP.
XX
AC   D26566;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Repetitive element ERE-1.
XX
KW   SINE; Interspersed Repeat; ECERE1; ERE-1; ERE1;
KW   short interspersed repetitive element; tRNA-Ser.
XX
OS   Equus caballus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Perissodactyla; Equidae; Equus.
XX
RN   [1]
RP   1-230
RA   Sakagami M., Ohshima K., Mukoyama H., Yasue H., Okada N.;
RT   "A novel tRNA species as an origin of short interspersed repetitive
RT   elements (SINEs):equine SINEs may have originated from tRNA-Ser.";
RL   J. Mol. Biol 239, 731-735 (1994).
XX
DR   GenBank; D26566; Positions      10     239.
XX
SQ   Sequence 230 BP; 68 A; 51 C; 67 G; 44 T; 0 others;
     gggggctggc ccgtggctga gtggttaagt tcgcgcactc cgctgcaagc ggcccagtgt        60
     ttcgttggtt cgaatcctgg aggtggacat ggcactgctc ggtcagaccc acgctgaggc       120
     agcgtcccac atgccacaac tagaaggacc cacaatgaag aatatacaac tatgtactgg       180
     ggggctttgg ggagaaagag gaaaaaataa aatctttaaa aaaaaaaaaa                  230
//
ID   SATII_OC    repbase; DNA   ; MAM   ; 586 BP.
XX
AC   AF498013; AF498014; AF498015; AY114136; AY114137;
XX
DT   19-2003 (Rel. 8.11, Created)
DT   19-2003 (Rel. 8.11, Last updated, Version 1)
XX
DE   Oryctolagus cuniculus monomeric satellite II - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; SATII_OC; satellite DNA.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RA   Ekes C., Hadlaczky G., Cserpan I.;
RT   "Identification of two rabbit satellite DNA families.";
RL   Unpublished.
XX
RN   [2]
RA   Ekes C., Hadlaczky G., Cserpan I.;
RT   "Direct Submission to Genbank.";
RL   Direct Submission to Genbank (04-APR-2002)Institute of Genetics,
RL   Biological Research Center, Temesvari krt. 62., Szeged H-6701,
RL   Hungary.
XX
RN   [3]
RA   Kohany O., Jurka J.;
RT   "SATII_OC Consensus.";
RL   Direct Submission to Repbase Update (2003).
XX
CC   [3] (Consensus)
XX
CC   Average similarity to consensus 92%.
XX
SQ   Sequence 586 BP; 194 A; 134 C; 104 G; 143 T; 11 others;
     aagcttcaaa cgcctatttg ttgtgttttt tatttcataa tggctactct gccyaaactc        60
     ttgtttgtat tgcgtcagaa tacaaaattt gggaaggaag aaggcaaaac caactcagac       120
     ccagaaaaca tttaggaaat tgccgctcaa gaaaccacaa atcggctgag gcacccaaaa       180
     caatgacagc aagccagaat tggagcargc caacagctgt gccctgattg aaaaagacca       240
     ttcctccsgt gycctgaact ccatattcca gcctcaaaac caaagctcac atcagaaaat       300
     tcattacaaa ccatgataaa taagaaaaat gagaaaaaag ccaaagaaat gcaagartcc       360
     wtaatgatat tgggcttgat ttagtcgcaa ggaaacmggc tgttyccgga ttcatccacc       420
     cctcccagct gactgcctgt ggaattctga ctgaattaac ctgaaaatcg cwgtgaaact       480
     cggtttggag gcaattaata tctgtcacct cagcmaaagt gttccatttc wttttccaaa       540
     acacaaaaac tcaccttggt cgtgttacct gtagatttct aagctt                      586
//
ID   MARINER1    repbase; DNA   ; MAM   ; 1274 BP.
XX
AC   L36092;
XX
DT   19-FEB-1997 (Rel. 2.01, Created)
DT   19-FEB-1997 (Rel. 2.01, Last updated, Version 1)
XX
DE   Mariner transposon.
XX
KW   Mariner; DNA transposon; Interspersed Repeat; MARINER1;
KW   mariner transposon.
XX
OS   Eutheria
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia.
XX
RN   [1]
RA   Smit A.F., Riggs D.A.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93, 1443-1448 (1996).
XX
RN   [2]
RA   Morgan T.G.;
RT   "Identification in the Human Genome of Mobile Elements Spread by
RT   DNA-mediated transposition.";
RL   J.Mol.Biol. 254, (1995).
XX
DR   GenBank; L36092; Positions  495294  497519.
XX
CC   30 bp terminal inverted repeats, TA target site.
XX
SQ   Sequence 1274 BP; 387 A; 264 C; 251 G; 351 T; 21 others;
     ttaggtcggt rcaaaagtaa ttrcggtttt tgcaytgttg gaatttgyca tttgatattg        60
     gaatacattc ttaaataaat gtggttatgt tatacatcat tttaatgggc atttctcgct       120
     ttacgttttt ttgctaatga cttattactt gctgtttatt tkrtgtttat tttagactat       180
     gnaaatgatg ttagacaaaa agcarattcg agcgattttc ttattcaagk tcaaamtgrr       240
     tcgtaaagcg gcggagacaa ctcgcaacat cagcaacgca tttggcccag gaactgctaa       300
     taaacataca gtgcagtggt ggttcaagaa gttttncaaa ggagacgaga gccttgaaga       360
     tgaggagtgt aatgacgggc catcagaagt tgacaacgac cagttgagag caatcatcga       420
     arycgatcct cttacaacta nacgagaagt tgctgaagaa ctcgacgttg accattctac       480
     ggtcgttcgg catttgaagc aaattggraa gnaaaaactc gataagtggg tgcctcataa       540
     agtgagcaaa actttttnaa attgtcattt taaagtgtca tctcttattc tatgcaataa       600
     caacgaacca tttcttgatc agattgtgac gtagaacgaa aagtggattt tatacgacaa       660
     ccggcgacga ccagctcagt ggttggaccg aaagaagctc caaagcactt cccaaagcca       720
     aacttgcacc aaaaaagtcg cggtcgcggt ctggtggtct gctgccagtg tgatccacca       780
     cagctttctg aatcctggca aaaccattac atctgagaag tatcttcagc aaattgatga       840
     gatgcaccaa aaactgcaat gcctgcacct ggcattggtc aacagaaagg gcccaattct       900
     tctccacgac aacgcccgac cgcacgtygc acaaccaacg cttcaaaagt tgaataaatt       960
     gggctacgaa cttttgcctc atccgccata ttcacctgac ctctcgccaa caaactacca      1020
     cttcttcaag catctcgtca actttttgca gggaaaacgc ttccacaacc agcaggatgc      1080
     agaaaatgct ttccaagagt tcgtcgaatc ccaaagcacg gatttttatg ctacaggaat      1140
     aaacaaactt atttctcgtt ggcaaaaatg tgttgattgt aatggttcct attttgatta      1200
     ataaagatgt gyttgagcct agttatgatt atgatttaat ggccaaaacc acaattactt      1260
     ttgcaccaac ctaa                                                        1274
//
ID   SINE_VV     repbase; DNA   ; MAM   ; 128 BP.
XX
AC   .
XX
DT   27-NOV-2001 (Rel. 6.1, Created)
DT   27-NOV-2001 (Rel. 6.1, Last updated, Version 1)
XX
DE   Vicugna vicugna tRNA-derived SINE - a consensus.
XX
KW   SINE; Interspersed Repeat; SINE_VV.
XX
OS   Vicugna vicugna
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Tylopoda; Camelidae; Vicugna.
XX
RN   [1]
RA   Lin Z., Nomura O., Hayashi T., Wada Y., Yasue H.;
RT   "Characterization of a SINE species from vicuna and its distribution
RT   in animal species including the family Camelidae.";
RL   Mamm. Genome 12(4), 305-308 (2001).
XX
RN   [2]
RP   1-128
RA   Jurka J.;
RL   Direct Submission to Repbase Update (26-NOV-2001).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 128 BP; 42 A; 32 C; 25 G; 26 T; 3 others;
     ggggagggta tagctcangt ggtagagygc gtgcttagca tgcacgaggt cctgggttca        60
     atccccagta cctccattaa aaaantaaat aaataaataa acctaattac ctcccccccc       120
     cacaaaaa                                                                128
//
ID   CHESHIRE_B  repbase; DNA   ; MAM   ; 338 BP.
XX
AC   .
XX
DT   13-AUG-1998 (Rel. 3.07, Created)
DT   13-AUG-1998 (Rel. 3.07, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon; HAT superfamily - a consensus.
XX
KW   hAT; DNA transposon; Interspersed Repeat; CHESHIRE_B;
KW   DNA transposon fossil; hAT superfamily; MER58B.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-1
RA   Kapitonov V.V., Jurka J.;
RT   "CHESHIRE_B..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [2]
RP   1-1
RA   Smit A.F.;
RT   "CHESHIRE_B..";
RL   Direct Submission to Repbase Update (1996).
XX
RN   [3]
RP   1-338
RA   Kapitonov V.V., Jurka J.;
RT   "CHESHIRE_B..";
RL   Direct Submission to Repbase Update (AUG-1998).
XX
CC   [3] (Consensus)
XX
CC   CHESHIRE_B is a nonautonomous derivate of CHASHIRE transposon.
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
CC   Original orientation [1] has been changed accordingly to the
CC   internal sequence [3].
XX
SQ   Sequence 338 BP; 101 A; 68 C; 70 G; 98 T; 1 others;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtactg        60
     cccgtaaact aagaatggtt tttacatttt taaatggttg gaagaaaaat caaaagaaga       120
     rtattttgtg acatgtgaaa attatatgaa attcaaattt cagtgtccat aaataaagtt       180
     ttattggaac acagccacgc ccattcgttt atatattgtc tatggctgct tttgcgctac       240
     aacggcagag ttgagtagtt gcgacagaga ccgtatggcc cgcaaagcct aaaatattta       300
     ctatctggcc ctttacagaa aaagtttgcc gacccctg                               338
//
ID   BTLTR1      repbase; DNA   ; MAM   ; 1198 BP.
XX
AC   V00116;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Bovine repetitive element isolated from satellite DNA.
XX
KW   SAT; Satellite; Simple Repeat; BTLTR1; BTREP2; Repetitive sequence.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1198
RA   Streeck E.R.;
RT   "A multicopy insertion sequence in the bovine genome with structural
RT   homology to the long terminal repeats of retroviruses.";
RL   Nature 298, 767-769 (1982).
XX
DR   GenBank; V00116; Positions       1    1198.
XX
SQ   Sequence 1198 BP; 296 A; 280 C; 244 G; 378 T; 0 others;
     tgcgtgagcc ggcatattgc atattgagtg catattgcat attgcatatt gagtgcagca        60
     ctttccacag catcatcttt caggatctgg aatagctcca ctggaattct atcactgctg       120
     ggagccagtg aggaactccg cctatgataa aggttatgag gaaggaggct cggcatacgc       180
     aaaggcggga tcgagcttca ggagtccccc tggaaattct cgagcatata cccccaaaac       240
     cagagtctgc ctactttctg cttgtgcttt cacctaaacc tctgacttta cggggggctc       300
     tcccccacta cctctctctg aaaaaagagt tagcttacag ttccagttaa taattcctgg       360
     gtgtgacagt gtttaaccta caaactcctt tggaaatcct ctagcctgcc tgaataggtt       420
     ttttcggcca catgggattg ttcagagcct cccaactgtg agaggcagga gatgttctaa       480
     actgtctaaa cacagattct tttgagtagt tacaagattg attagaaatt gtattggtga       540
     atggtttttc acttgttggg ccattgtttg ctgctaagtt tccatatccc ttacctgctg       600
     tgtccctggc agtgtattga ttaatataat tggtgtaagt agtagcttta atgtttgtaa       660
     cctgggaccc ttgagttaat tctttttctt gttatagccc accacacctt tgctctgtag       720
     gaatgcaact ttatctaatg cttttttgga gggtggctcc tgaccaacca cctttagaga       780
     aaaataagtt ttctgaagaa aaggtcttaa aatgttaaca ggcctccggg ccagaagatg       840
     atgcaaatca cctaagcttt tgcatatgat aagtttgcag gaagaaagcc tggtttgctg       900
     caagactcga ccccttcccc cattatcctc tatgcataac ttaaggtata aaaactactt       960
     tgaaaaataa agtgcgggcc ttgttcaccg aaacttggtc tcaccatgtc gttctttctc      1020
     ttaccttctg gctgaattat tcagcctctt ttctccactg aatttcctca ctgagctatc      1080
     ctcattctat tactctttat atccttaatt aacatttaat taagcagtgg tttcctgatc      1140
     ttcgcctacg ccgtctctcc ttcgaatacc ctggatcagc cggggctggt ccccggca        1198
//
ID   MER34       repbase; DNA   ; MAM   ; 546 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Human medium reiteration frequency MER34 repetitive sequence - a
DE   consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; LTR; MER34;
KW   MER4I-group.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RA   Toth G., Jurka J.;
RT   "Repetitive DNA in and around translocation breakpoints of the
RT   Philadelphia chromosome..";
RL   Gene 140, 285-288 (1994).
XX
RN   [2]
RP   1-1
RA   Smit A.F.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   Ph.D. thesis (USC 1995).
XX
RN   [3]
RP   1-546
RA   Kapitonov V.V., Jurka J.;
RT   "MER34..";
RL   Direct Submission to Repbase Update (JUN-1998).
XX
CC   [3] (Consensus)
XX
CC   Putative LTR [3] of retroelement related to the MER4I-group;
CC   it has 4 bp target site duplications [3].
CC   MER34 elements share common fragments with MER39 and LTR29.
CC   Original orientation [1,2] has been changed accordingly to the
CC   internal sequence [3].
XX
SQ   Sequence 546 BP; 152 A; 128 C; 101 G; 157 T; 8 others;
     tawtgaagga gatcagaata tgccacccca aaatatgcca ctttggcata aggattattt        60
     tgagctaaag gcacttgaga aacagcagrt gcaagaagag cactctgacc ttcctctttt       120
     cttcctgaaa gcaggagata aaactcccat gtgaaagacg ttctctctat accaggagga       180
     aggaaacatt cttatcgtca gagacgggga gtcgaggccg agggaaatct gtacgaacaa       240
     accttgttaa actaacycty atcttcctag tcacttctcc acgatgaacc gccctagccc       300
     aaaccccttt gtcttgtcac gttttcacaa tttactactc tttgtccaac ctagtatawa       360
     agcgttcgac tctaaccgct tctttgggtc ttcatttcct tatgagggct cccatgtaca       420
     tgtaaaacat acttaaataa atttgtatgc ttttctcctg ttaatctgtc ttatgtcagt       480
     ttaattatcg ggcccagccg gaaactctaa gagggtagag gwaaaatttt tccttcyctn       540
     ccatgg                                                                  546
//
ID   MVB2        repbase; DNA   ; MAM   ; 195 BP.
XX
AC   X52381;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   22-1995 (Rel. 1.11, Last updated, Version 1)
XX
DE   Mink DNA containing B2-like repeat.
XX
KW   SINE; Interspersed Repeat; MVB2; Repetitive element;
KW   tRNA related SINE.
XX
OS   Mustela vison
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Mustelidae; Mustelinae;
OC   Mustela.
XX
RN   [1]
RP   1-195
RA   Lavrentieva V.M.;
RT   "MVB2.";
RL   Direct Submission to Genbank (02-APR-1990)Lavrentieva M.V., Institute
RL   of Cytology and Genetics, Pr. Lavrentieva, 10 Novosibirsk 630090,
RL   USSR..
XX
RN   [2]
RP   1-195
RA   Lavrentieva V.M., Rivkin I.M., Shilov G.A., Kobetz L.M.,
RA   Rogozin B.I., Serov L.O.;
RT   "B2-like repetitive sequence of American mink genome.";
RL   Dokl. Akad. Nauk SSSR 307, 226-230 (1989).
XX
DR   GenBank; X52381; Positions      33     227.
XX
SQ   Sequence 195 BP; 36 A; 57 C; 47 G; 55 T; 0 others;
     ggtgcctggg tggctcagtg ggttaagccg ctgccttcag ccaggtcatg atctcggggt        60
     actgggatcg agtcccgcat cgggctctct gctcggcggg gagcctgcct tcctcctcct       120
     tctctctctg cctgcctctc tgcctacttg tgatctctct ctgtcaaata aataaaataa       180
     aatctttaaa aaaaa                                                        195
//
ID   BDDF1       repbase; DNA   ; MAM   ; 409 BP.
XX
AC   Z25528;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   5' end of BDDF repeat; repeat region DNA.
XX
KW   BDDF1; BTBDDF1; Repeat region.
XX
OS   Bos taurus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-409
RA   Plucienniczak A.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (12-AUG-1993). PLUCIENNICZAK
RL   A., PP TERPOL, LABORATORY OF GENETIC ENGINEERING, P.O.W. 57, SIERADZ,
RL   POLAND, 98-200.
XX
RN   [2]
RP   1-409
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Bovine Alu-like sequences mediate transposition of a new
RT   site-specific retroelement.";
RL   Gene 152(2), 261-264 (1995).
XX
DR   GenBank; Z25528; Positions      61     469.
XX
SQ   Sequence 409 BP; 117 A; 100 C; 106 G; 86 T; 0 others;
     ggagaaggca atggcacccc actccagtac tcttgcctgg aaaatcccat ggacggagga        60
     ggagcctcct aggtcgcagt ccatggggtc gctaagagtc ggacacgact gaggcgactt       120
     gactttcact tttcactttc atgcattagt aaagctcgga ccccacgtat atcacttgga       180
     ggcttgtaaa atatgtaact tggtcacatc cttgcctaat ttcaatgaaa ctaggccatg       240
     ccatgtgggg ccacccagga cggacggaca ggtcatggtg gagaaagact gacagaatgt       300
     ggtccactgc agaggaaatg gcaaaccact gcatcattct tgccttgaga accccatagc       360
     agcgtgaaat gcaaaaagat aggatactga aagaggaact ccccaggta                   409
//
ID   L1A_OC      repbase; DNA   ; MAM   ; 6497 BP.
XX
AC   X15965;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Rabbit L1Oc5 repeat.
XX
KW   L1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   L1 interspersed repeat family; L1 repetitive sequence; L1A_OC;
KW   L1Oc5 repeat; OCL1A; Repetitive sequence.
XX
OS   Oryctolagus cuniculus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Lagomorpha; Leporidae; Oryctolagus.
XX
RN   [1]
RP   1-6497
RA   Demers W.G., Matunis J.M., Hardison C.R.;
RT   "The L1 family of long interspersed repetitive DNA in rabbits:
RT   sequence, copy number, conserved open reading frames, and similarity
RT   to keratin.";
RL   J. Mol. Evol 29, 3-19 (1989).
XX
DR   Genbank; X15965; Positions       1    6497.
XX
SQ   Sequence 6497 BP; 2596 A; 1247 C; 1237 G; 1417 T; 0 others;
     ggccgcaccc atctcaagcc tccaaggctc ctccaacagc aggcagtcca cttaacatgg        60
     acacagtata aaaaaaaaaa aaaaagaaaa aaaaaaaacg cacagtgaca caagaagaat       120
     taactatgcc gagtaacaaa cacagaaata gagggagcaa gatcaacgat gacactatga       180
     tgcctccaaa taagcaaaac accccaagcc aagagtatga agatgatgag atagaagaaa       240
     tgcaagatac ggatttcaaa aaatttatga taagaacatt tagaagtttt caaaagcaaa       300
     tccttgaact acagaaatcc ttaatggaca agattgaaaa tctctctcgt gaaaatgaaa       360
     ttttaaggaa gagtcaaaat gaaactcaga aactagtaga acaggaaagt gtaatagtga       420
     agagaaatca aaatgaaatg aagagctcaa tagatcaaat ggcaaacaca ttagaaagcc       480
     ttaaaaacag aatgggtgaa gcagaagaca gaatattgga cttagaagac agagcacagg       540
     aaagtataca gtcaaaccaa agaaaagaag aggaaattag aaatctaaaa aatattgttg       600
     ggaatctaca ggatactatt aaaaaaacca acattcgagt tctaggagtt cctgaaggca       660
     tggagagaga gaaaggattg gaaggccttt ttagtgagat actagcagag aactttccag       720
     gtttggagaa ggacagagat atcctagtac aggaagctca tagaaccccc aataaacatg       780
     accaaaagag atcctcacac gacacgtggt aattaaactt accacagtga aacataaaga       840
     aaagatccta aaatgtgcaa gagagaaaca tcagattact ctcagaggat ctccaatcag       900
     actcacagca gacttctcat cagaaaccct acaagctagg agggaatggc gagacatagc       960
     acaggtgcta agagagaaaa attgccagcc cagaatatta tatcctgcca agctctcatt      1020
     tgtgaatgaa ggtgaaataa agacctttca tagcaaacag aaattgaaag actttgtggc      1080
     cacttgtccg gccctgcaaa agatacttaa agatgtgcta cactcagaaa cacagaaaca      1140
     cggccatcaa tatgaaagaa gggaaaggaa gaacacctac cagtaaaaga gcatgggaag      1200
     ctcaaagcat atactagaaa atatttccgg gaaaatggca gggcaaagtc actacgtatc      1260
     aattgtcaca ttgaacatta atggtctgaa ttcttcagtt aaaagacacc gtttggatga      1320
     ctggctcaca gaacacaacc caactatttg ttgcctacaa gaaacacatc tctctaacaa      1380
     agaggcatgc agactgaaag tgaaaggttg gaaaaagata ttccatgcca acagaaacca      1440
     aaaaaagcag gtgtagccat attaatatca gacaaaataa actttaatac aaaaactgtt      1500
     aagagagaca aagagggaca ctatataatg attaagggtt caattcaaca ggaagatgta      1560
     actattataa atgtatatgc acctaattac agggcaccgg tctatttaaa agatatgtta      1620
     agggacttaa agggagactt agattccaat acaatagtac tgggggactt caatactcca      1680
     ctctcagaaa tagacagatc atccggacag aagatcaaca aggaaacagc agatttaatt      1740
     gacactattg cccaaatgga tctaacagat atctacagaa ctttcaaccc tacatctaca      1800
     gacttcacat tcttctcagc agcgcatggg accttctcta ggattgatca catactaggc      1860
     cataaagcaa gtctcagcaa atttaaaaga attagaatca taccatgcag cttctcagac      1920
     cacagtggga tgaagctgga aattagcaac tcaggaaacc caagaaagta tgcaaacaca      1980
     tggagactga acaacatgct cctgaatgaa cactgggtca ttcaagaaat caaaagagaa      2040
     atcaaaaact ttctggaagt aaatgaagac aacaacacaa catatcaaaa cttatgggat      2100
     acagcaaaag cagtattgag aggcaaattt atagcaatag gtgcctatat caagaaattg      2160
     gaaaggcacc aaataaatga gctttcagtg cacctcaagg acctagaaaa actgcagcaa      2220
     accaaaccca aatctagtag gagaagagaa ataattaaaa ccagagaaga aattaacagg      2280
     attgaatcaa aaaaaaaaaa aacattacaa aaaatcagcc aagcgagaag ctggtttttt      2340
     gaaaaaataa acaaaattga caccccattg gcccaactaa ctaaaaaaag aagagaaaag      2400
     acccaaatca ataaaatcag agatgaaaaa gtaaacgtaa caacagacac cacagaaata      2460
     aaaagaatca tcagaaatta ctacaaggac ctgtatgcca gcaaacagga aaacctatca      2520
     gaaatggata gattcctgga cacatgcaat ctaccaaaat tgaaccatga agacatcgaa      2580
     aacctaaata gacccataac tgaaacagaa attgaaacag taataaaggc cctcccaaca      2640
     aagaaaagcc caggaccaga tggattcact gctgaattct accagacatt taaagaagaa      2700
     ctaatcccat tattctcaaa ctattcagaa caatcgaaaa agagggaatc ctcccaaatt      2760
     ctttctatga agccagcatc accttaatcc ctaagccaga gaaagatgca ggactgaaag      2820
     aaaattacag accaatatcc ctgatgaaca tagatgcaaa aatcctcaat aaaattctgg      2880
     ccaatagaat acaacaacac atcaggaaaa tcatccaccc agaccaagtg ggattcatcc      2940
     ctggtatgca gggatggttc aatgttcgca aatcaatcaa tgtgattcac cacattaaca      3000
     gactgcagaa gaaaaaccat atggttatct caattgatgc agagaaagca tttgataaaa      3060
     ttcaacaccc tttcatgatg aaaactctaa gcaaattggg tatagaagga acattcctca      3120
     atataatcaa agcaatttat aaaaaaccca cagccagcat cctattgaat ggggaaaagt      3180
     tggaagcatt tccactaaaa tctggcacca ggcagggatg cccactctca ccactgctat      3240
     ttaacatagt tctggatgtt ttagccagag ccatcagaca agaaaaagaa atcaaaggaa      3300
     tacaaatcaa gaaggaagaa gtcaaactat ccctctttgc agacgatatg attctgtact      3360
     tagaggatcc aaagaactct actaagagac tattggaact catagaggag tttggcaaag      3420
     tggcaggata taaaatcaat gcacaaaaat caacagcctt tgtatacaca agcaatgcca      3480
     tggctgagaa agaactgcta agatcaatcc cattcacaat agctacaaaa acaatcaaat      3540
     accttggaat aaacttaacc aaggacgtta aagatctcta cgatgaaaat tacaaaacct      3600
     taaagaaaga aatagaagag gataccaaaa aatggaaaaa tcttccatgc tcatggattg      3660
     gaagatcaac atcatcaaaa tgtccattct cccaaaagca atttatagat tcaatgcaat      3720
     accaatcaag ataccaaaga cattcttcta tgatctagaa aaaatgatgc tgaaattcat      3780
     atggaggcac aagagacctc gaatagctaa agcaatcttg tacaacaaaa acaaagccgg      3840
     aggcatcaca ataccagact tcaggacata ctacagggca gtagttatca aaacagcatg      3900
     gtactggtac agaaacagat ggatagacca atggaacaga attgaaacac cagaaatcaa      3960
     tccaaacatc tacagccaac ttttatttga tcaaggatct aaaactaatt cctggagcaa      4020
     ggacagtcta ttcaataaat ggtgttggga aaactggatt tccacgtgca gaagcatgaa      4080
     gcaagacccc taccttacat ctcacacaaa aatccactca acatggatta aagacctaaa      4140
     tccacgacct gacaccatta agttattaga gaacattgga gaaacccttc aagatattgg      4200
     cacaggcaaa gaatttctgg aaaagacccg ggaggcacag gcagtcaaag ccaaaatcaa      4260
     ctattgggat tgcatcaaat tgagaagttt ctgtactgca aaagaaacag tcaggagagt      4320
     gaagagacaa ccaacagaat gggaaaaaat atttgcaaac tatgcaacag ataaagggtt      4380
     aataaccaga atctacaaag aaatcaagaa actccacaac atcaaaacaa acaacccact      4440
     taagagatgg accaaggacc tcaatagaca tttttcaaaa gaggaaatcc aaatggccaa      4500
     caggcacatg aaaaaatgtt caaggtcact agcaatcagg gaaatgcaaa tcaaaaccac      4560
     aatgaggttt cacctcaccc cggttagaat ggttcacatg cagaaatcta ccaacaacag      4620
     atgctggtga ggatgtgggg aaaaagggac actaacccac tgttggtggg aatgcaaact      4680
     ggtcaagccc ctatggaaat cagtctggag attcctcaga aacctgaata taaccctacc      4740
     gttcgaccca gccatcccac tccttggaat ttacccaaag gagtttaaat tgataaagaa      4800
     aaaagcggtc tgcaccctaa tgtttgttgc agcacaattc acaatagcca acacctggaa      4860
     ccaacctaaa tgcccatcaa tggtagactg gataaagaaa ttatgggata tgtattcttt      4920
     agaatactat accgcagtaa gaaacaacga aatccagtca tttgcaacaa aatggaggaa      4980
     tctggaacac atcatgctga gtgaagtaag ccagtcccaa agggacaaat accatatgtt      5040
     ctccctgatc ggtgacaact gactgaacac caaaaaggaa acctcctgaa gtgaaatgga      5100
     cactatgaga aatggtgact tgatcagcat agccctgact gctaatggac aacttaatac      5160
     attatccctc atagtatttt ttttgtctgt tctacttaat atgactggtt taattctgta      5220
     attatcacac agttattctt aagtgttgaa aattaactga aatgtgatcc ctgttaaaca      5280
     taagagtggc aataagagag ggaagagatg tataatttgg gacatgctca ggctgacttg      5340
     ccccaattgg tagagttgga aacataccag gggattccaa ttcaatccca tcaaggtggc      5400
     atgtgccaat gccatctcac tattccaagt gatcaatttc agttcacaat tgatcataat      5460
     gaaaggacta agagtcaaag ggagcacata aacaagtcta gtatctgcta acactaaccg      5520
     atagaataaa taaaggggag agtgatccaa catgggaagt gagatactca gcagactcat      5580
     agaatggcgg agtgtcctaa atagcactct ggcctcagaa tcagccctaa aggcactcgg      5640
     atctggctga aaagcccatg agagtatttc aggcatggaa agccaagaca ctctggcaaa      5700
     aagatctctg tgaatgagat cccagtggaa agaacaggtc ttcaaagagg gaggtgcctt      5760
     tctctgaagg gaggagagaa cctccacttt gactatgacc gtgtctaaac aagataagag      5820
     tcggagaact caaggggctt ccatagcctt ggaaactcat gactggtgca tagggagatt      5880
     actgatgcca taaacaggag tgtcaatttg taaagtcaac aacaggagtc actgtgcact      5940
     tactcctcat gtaggatctc tgtccttaat gtgctgtaca ctgaagctta atgctataac      6000
     gagtactcaa acagtatatt tcactttgtg tttctatggg ggtgcaaacg attgaaatct      6060
     ttacttaatg tacactaaac tgatcttctg taaaaaaaaa aagaaaagaa aaaaaaaaga      6120
     aattatcaat tcccaacttg actctcactg ggattaaaca tgacaatagg tctcatctga      6180
     tttcatcatc atttaaaaaa aaatcatcta ttatttttca ctttatgttt ctgtgtggga      6240
     gcaaactgtt gaaatcctta cttaaggtat actaagctga tcttctgcat attaagataa      6300
     taaaaatgaa tcttgatgtg aatggaaggg gagagggagt gggaaagggg agggttgtgg      6360
     gtgggaggga cggtatgggg gggaagccat tgtaacccat gagtcgtact ttggaaattt      6420
     atattcatta aataaaagat aaaaaaaaag aataaatgta aaataaatac aattttggag      6480
     aaaaaaaata tatcttt                                                     6497
//
ID   MER112      repbase; DNA   ; MAM   ; 281 BP.
XX
AC   .
XX
DT   31-MAY-2001 (Rel. 6.04, Created)
DT   31-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   Interspersed repetitive element MER112.
XX
KW   hAT; DNA transposon; Interspersed Repeat; MER112.
XX
OS   Homo sapiens
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-281
RA   Jurka J.;
RT   "MER112..";
RL   Direct Submission to Repbase Update (FEB-1999).
XX
CC   [1] (Consensus)
XX
CC   Unclassified. Putative non-autonomous DNA transposon.
CC   Present in human & other mammals; approximately 1000 copies
CC   per haploid genome.
XX
SQ   Sequence 281 BP; 98 A; 56 C; 27 G; 98 T; 2 others;
     tccagaccag tggctttcaa actttttttg actatgaccc acagtaagaa atacatttta        60
     catnatgacc cagtacacac atacatatat ataactgaaa caaaagtttc ataaaacaat       120
     acttaccctt actatatgta atgcactctg atattttcta ttctattcta ttctatttta       180
     ttttttttaa aaaaaaatgc tggttataac ccactaaatt gatttcataa cccactaatt       240
     tttgggtcac racctgcagt ttgaaaaaca ctgctctaga a                           281
//
ID   SINEC2A1_CF repbase; DNA   ; MAM   ; 196 BP.
XX
AC   .
XX
DT   09-2004 (Rel. 9.11, Created)
DT   09-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Young dog SINE element SINEC2A1_CF.
XX
KW   SINE; Interspersed Repeat; SINE element; SINEC2A1_CF.
XX
OS   Canis familiaris
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-196
RA   Jurka J., Gentles A.;
RT   "Young dog SINE element SINEC2A1_CF.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   Average similarity to consensus 94%. This sequence, and
CC   SINEC2A2, supersede previous SINEC2_CF.
XX
SQ   Sequence 196 BP; 42 A; 57 C; 48 G; 49 T; 0 others;
     gggatccctg ggtggcgcag cggtttggcg cctgcctttg gcccagggcg cgatcctgga        60
     gacccgggat cgaatcccac gtcgggctcc cggtgcatgg agcctgcttc tccctctgcc       120
     tgtgtctctg cctctctctc tctctctctc tgtgtgacta tcataaataa ataaaaattt       180
     aaaaaaaaaa aaaaaa                                                       196
//
ID   MTV9LTR1_SM repbase; DNA   ; MAM   ; 773 BP.
XX
AC   M19965;
XX
DT   22-1995 (Rel. 1.11, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Suncus murinus endogenous mammary tumor provirus 5' LTR mRNA.
XX
KW   LTR Retrotransposon; Interspersed Repeat; endogenous retrovirus;
KW   MTV9LTR1_SM; SMLTR1; Long terminal repeat (LTR).
XX
OS   Suncus murinus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Insectivora; Soricidae; Crocidurinae; Suncus.
XX
RN   [1]
RP   1-773
RA   Yanagawa I.S., Murakami A., Hoshino M., Tanaka H.;
RT   "Structural and functional analysis of long terminal repeats of Suncus
RT   murinus mammary tumor virus.";
RL   J. Virol 62, 1235-1242 (1988).
XX
DR   GenBank; M19965; Positions       1     773.
XX
SQ   Sequence 773 BP; 187 A; 213 C; 169 G; 204 T; 0 others;
     cgtcaagatc cgtcaagatt gtgcttgttg tgtgggaagc cgctggataa gtactagcct        60
     ttcccccaca ttgctgacct ttgactggct gcttaactgc ttgaaagctt gcagcttgtg       120
     cttaatggga acagaaacca gacatccgcg aagcccaggc caacaggaaa ccagcagctc       180
     caaaaatatc actagggaat gtacagctct tgcccaccac tcactctgat caatgcaaac       240
     atggccatga gatttatgag tactctgagt ctttaggtta gcattttcca gacaaagaaa       300
     taatgggttt ccaatattaa ccagaacaaa cggtgtgcgc aaatgtttga tgtataacat       360
     gtttatgtaa aaggagcttg cattccatcc aagtgtgtac gtgacttccg cgttctgtgc       420
     tgcgaccatt tccccctctc ctattaaggt catgaattgt gctgttcatc cccaattgga       480
     tgcctcgaaa gaacaacctg agctgggatt tccccattgg ttcccggacc taagcccctc       540
     acccctttgt tataagacta cttatacccc tggcttatgc tgaataaacg ctcttgatcc       600
     ttcacggtgt catgagtcat tactaacctt ttgcctccac aggtactcaa gagagcccga       660
     cccaccacgt tgtgcgaacg cttgtaggaa cactcctcgg ccgctggccg gcttggagct       720
     gcttcggagg cccccccctc agcgtttcgc atctggcgcc caacgtgcgt gtc              773
//
