ID   CERV1_INT   repbase; DNA   ; PRI   ; 7337 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   Chimpanzee endogenous retrovirus CERV1 - a consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; CERV1_INT;
KW   Internal sequence of chimpanzee endogenous; LTR.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-7337
RA   Skaletsky H., Hughes F.J., Page C.D.;
RT   "Consensus sequence of an endogenous retrovirus CERV1.";
RL   Repbase Reports 4(7), 189-189 (2004).
XX
CC   [1] (Consensus)
XX
CC   Internal sequence of an endogenous retrovirus with ORFs
CC   for gag (961-2370), pol (3042-5624) and env (5618-7288). CERV1
CC   is absent from the human genome. It is similar to an
CC   uncharacterized interspersed repeat mulatta and Papio anubis
CC   genomes.
XX
SQ   Sequence 7337 BP; 1892 A; 2103 C; 1788 G; 1546 T; 8 others;
     tctgggggcc cgtccgggat tccccaagcc caccagaccc ctggtcaacg gatctgctag        60
     gatcgatcta ctgataggtg agctggctcg tctccgtttg tctgtctgtg tctgttctga       120
     atccgaatct gtgactcgcg aggtctgaaa ctggagctgg cacagtcctg gcggacgcgc       180
     tataggacgg ccagcggaga ccggtgggag acgtcccctg gctctcatct gatctatatt       240
     gcgatctgag ctgccccggt ttggcgggca gcagccgtat ctgagctgcc cggttgatcg       300
     ggcagcatct gtctctgatc tgagctgccc cggttgcggc agcagcctat ctgactgccc       360
     ggttgggcgg gcagcagctg tctctgatct gagctgcccc agcagctgtc tctgatctga       420
     gctgccagta nctgtctctg atctgagctg ccccggtttg gcgggcagca gctgttcatc       480
     tgagctgccc ngttnggcng gcagcanctg tctctgatct gagctgcccg gcgggcagca       540
     gctgtctctg atctgagctg ccccggtttg gcgggcagca gctgtctctg atctgagctg       600
     ccccagtgca gccgtatctg agggcagctg tctctgatct gagctgcccg gcgggcagca       660
     gctgagctgc cccggtttgg cgggcagcag ctgtctctga tctgcccggt tnggcgggca       720
     gcagctgtct ctatctgagc tgccccggtt tggcgggcag cagctgtctc tgatctgagc       780
     tgccccggtt tggcgggggc tgccccagtg cgntcggctg ccccggggcg cagctgcctc       840
     tgaccagggc tgccaaagtg cgcctgcgat tagatatcat taataagttc agatcagatt       900
     tcctttacag ggattcaaac ccacattcct ttacaggaag agactacaaa ttattacagg       960
     atgggtaata cccagagcac tcctctatct ctccttacga gtaatttcaa agaagttaga      1020
     gcaaggggcc atgatcttgg tatagaaatc aggaaaggaa agctaattac tctgtgtcgc      1080
     tccgaatggc ctgcctttga tgtggggtgg ccgcccgaag ggaccttccg acttgctgtc      1140
     atcactaggg taaagtccaa gattttccta cctgggcgtg cgggccactt agatcaaatc      1200
     ccatatatcc tcatatggca ggaccttgtt gagaacccgc ctccttggct gtcccctttc      1260
     caattggcct ctgaaccctg taaggcacta gttgctcgac cactaaaatc caagcaacca      1320
     actgcccccc ccatcctgtt ctacctgaca gcggggaccc actgttcaca gaaccccctc      1380
     cgtacccctc cgggccccag gccccagccc ccctggctga gctgcgggag ggagcaggcg      1440
     gacgggaggc ggccggcaca cacgggcccg ctgaaaggga aagtaacttt gaagggccgg      1500
     cggggaggac gcgagggcgc acttcgcgga ctagcccccc ctcagccgcc tgactccacg      1560
     gtggctttac cccttcggga aataggaccc ccagatgaca caggaatccc caggctccag      1620
     tactggccat tctccaccag tgatctgtat aactggaaaa ctcagagtgc tcggttttca      1680
     gacaacccca aagatttact ggctttacta gatagtgtca tgttcaccca ccagcccact      1740
     tgggatgatt gtcagcagct cctccgaatt ttgttcacca cggaagagcg agagagaata      1800
     cagatagaag ctagaaagct ggtcccgggg gacgacggtc aaccgactgc caaccccgac      1860
     ctcataaacg caacctttcc tctgaccagg ccggcgtggg actacaacac ggcagaaggt      1920
     aggggacggc tacaccttta tcgccagact ctaatggcag gtctccgggc agctgctcgc      1980
     aagcccacta atttggctaa agtatattct attctgcagg gaaagacaga gagcccagct      2040
     acctacttag aaagattaat ggaagctttt agacagtaca cccccataga tccagaggct      2100
     ccaggaagtc aggcagctgt tgtaatgtct ttcgtaaatc aggcagcccc agatattaag      2160
     agaaaactcc agaaattaga agacttggag ggaaagcgga ttcaggacct ccttcagata      2220
     gcccagcggg tttacaataa cagagatact ccagaggaaa agcaatttaa ggccactgaa      2280
     aaaatgacca aggtcctggc agcagtggta cagaaagagc atctacagcc agagtacacc      2340
     caacctaggc ggccccccgg catgataatc tgagcaaaga ccaatgtgcc tattgtaagg      2400
     gggctggcca ctaggtaaga gactgcccca aaaagaaacc acgaggacag ggacccgcct      2460
     aggtctacac ccgtactagt cactcaagac gaagactagg gaagacgggg ttcggacccc      2520
     ctccccgaac ctagggtaac tttgcaagtg gaggggtccc cagtccagtt cttggtcgat      2580
     acnggagcac agcactcggt cttagttaaa actaatggga aattatcctc caaatcctcg      2640
     tgggtacaag gggccacagg agttaagaaa tacccatgga caacacaaag aacagtaaac      2700
     ctcggagcca agaatgtaac ccattctttc ctggtcatcc ctgagagccc ctgtccccta      2760
     ttggggagag acctgctaac taaaatggag cacagatcca tttcctccct gaggggcccg      2820
     tcgtgaccaa ctcccacaat cgaccgtgtc ctcctgacta taaacctaga agatgagtac      2880
     cggctccacc aggagaaagc ggcccctgac caggacatag caactggctc cagcatatcc      2940
     agaagcgtgg gcggaaacgg ggggcttagg tctagcaaaa cacctcctgc cttatttatt      3000
     gaacttaagc ctggacagac ccctgcggta cgccataccc gatgccccta gagccaagaa      3060
     gttcctccag cccccacccg agagacacaa gaagacagac accctactca catcaatggt      3120
     acgttactct gaccgaggaa gaacctaacc gccaactgct taagggaggg cagcgctggc      3180
     taacagacgc ccggaaacaa actgttctgc agatccccag gccacaatcc acccgacaag      3240
     tgagagaatt cctggggtcg gcaggatttt gcagactatg gatacctggg ttcgcagaac      3300
     tggctaaacc cttgtatcag gcaacacggg ggcaacagcc atttaattgg acagacgaag      3360
     ccgagttggc cttccaacag attaaaaccg ccctactctc cgcgcctgca ctaggactac      3420
     ctgatgttac caagcccttc cacttatacg tggatgagaa taagggtgtc gccaaggcgg      3480
     taataactca gaacttaggc ccctggcgga ggccagttgc ctacctgtca aagaagttag      3540
     acccagtagc tgccgggtgg cccccttgtc tccgaatgat tgcggccacg gctctgatgg      3600
     tgcaagatgc tgataaactt gtcatggggc aagaattgcg ggtcgttact ccacatgcca      3660
     tcgaaggtgt actcaaacag ccacctaatc gatggatgag taacgcccgg ctcacccact      3720
     accaaggact actactaaat cctctcagga taattttcct gcccccaacg accttaaacc      3780
     ctgcctcgct gctgcccaac ccggacctgg acgccccact ccatgactgc accaagatac      3840
     tagctcaggt gcacggagtt cgagaagacc tgcaggaccg cccacttcct gacgccgacc      3900
     tcgtctggtt cactgatggg agcagcttca tgcatcaagg ccagaggtac gctggagcgg      3960
     cagtaacttc agagactgag gtaatctggg cggaacccct gcccccgggg acatcggccc      4020
     agaaggccga actgatagcg ctcacccaag ctcttacctt aggggcgggg aaaaagctga      4080
     cagtatatac agacagccga tatgcttttg caacggcgca tatacatggg gccatttaca      4140
     gggagcgagg gttactgacg gctgaaggaa aagagataaa aaacaagcaa gagatcctag      4200
     ccctgctaac agccctatgg aggccagaaa aattagccat tgtacattgc ccagggcatc      4260
     agaaactaac tactccaact gctcaaggca actttctggc agaccaaact gcaaggaatg      4320
     tggcgaaggc tcccagccaa ctccttgcac tccagctccc tgacccgggc ccccgggact      4380
     tgccatattt ccctgaatat tcagaacaag atctccagtg gattgacaaa cttcccctga      4440
     aacaaatcca gaatgggtgg tggactgata ctaatgacca aaccatccta ccagaaaaat      4500
     taggacaaca ggtgttagaa cacatccacc gaaccaccca cctgggggcc cggcggatga      4560
     tagacctgat cagacgctcc aagctcaaaa tcagacatat agctgagacg gccagcagta      4620
     tcgtgacaag ttgcaaagtc tgccagctta acaacgcata cccccaatct caagctgcaa      4680
     caggaacaag gctcagggga accaggcccg gtatctactg ggaagtagat tttactgaaa      4740
     taaagccagg aaagtacggg taccggtact tacttgtctt tgtagatact ttttcagggt      4800
     ggactgaagc attcccaacc aaaagagaaa ctgctcaggt cgtagcaaag aaaattctgg      4860
     aagatatcct tcccaggtat ggcttcccca tccagatagg gtcagataat gggcccgctt      4920
     tcgtcgctaa ggtaagtcag gacttggctt ccatccttgg ggcaaattgg aaactacatt      4980
     gcgcttacag gccccagagt tcaggacagg tagaaaggat gaatcggacc ttaaaagaga      5040
     ccttaactaa attgactata gagactggcg ctaattgggt agtccttctc ccctatgctc      5100
     tgttccgggc ccgtaatacc ccttacaaac tgggcctcac cccttacgaa atcatgtatg      5160
     gcagacctcc acccctggtt cctagcttaa aagatgacct gcttaagtct gaaacagaaa      5220
     atgtctctga attcttattt tccttacaag ccttacagaa aattcaccaa gaaatctggc      5280
     ccaagctgaa agagctatat gagaccagtc ccccaccgac accccatccg taccagccgg      5340
     gagactgggt cctggttaag cgacaccgac aagagaccct agagcccagg tggaaaggac      5400
     cactccaagt actcctgacc acacccaccg ccctgaaggt agaaggcatt gcgtcgtgga      5460
     tccactacac ccacgtcaag ccagtggacc caacctccga ccttctgggg ccaatcacgg      5520
     cggcggcggc tgaagcaccg gacacgtgga ctgtggacag agctaagaac aaccccttaa      5580
     aactcaccct gcgccggcag cataactcac tgcaaacatg cagttaggta gtctaactct      5640
     aacattagtc gccctagtgg ccgctgggga aaacataaag ccagctccta atccctttgt      5700
     ctggagattc tggctttatg aaaaccaaac ccaccctggg caacctcata agcccgggaa      5760
     attagtggcc agtgcagatt gcccctcctc agggtgcaat agcccaattt tactaaattt      5820
     taccgatttc ccagtagcca aaccagtggc accaataata tgcttcgagt atgatcagac      5880
     tgaatacaat tgtaagcact attggtggca ccaaagtgcc ggctgccctt ataactattg      5940
     taacatccat aaataccaat ggtggggtgg agaagaacag atagatccca gatggccctt      6000
     ccatcgcaga cgagatagag acctttcata tacatggata gttagagacc cctggaactc      6060
     ccgctggacc acgcctcaac acggggctgt atactactcc tccgcctcca catggcctag      6120
     cagtcacctc tatctgtggc ggggtctagt gcaggtacgg cccctggtcc atggaaatat      6180
     ccagcgacaa gaaaaccgcc tgacacaaga tttacgtcct ttttcctggt taaaattatt      6240
     gcaagaagga ttagaacttg ccaaccttac aggacttcac agcctgtctg gctgctttct      6300
     atgtgccact ctagggcgtc caccgctaac cgctgtcccc ctgccatggg gatcatccac      6360
     ctctgcccaa gctaacaacc accaaaacct ctcatatgcc cctatcccta acgtgccact      6420
     atacctaaac cccagtcaag agaagtttcc ctactgtttc tcaggaacta attccagcct      6480
     ctgcaacatc actgcaacgc cccctaacat caccttaagg gctccgtcag gcatattctt      6540
     ctggtgtaat ggaacattat ctaaaaacct atcaagcccc tctgttacca acctactgtg      6600
     tcttcctgtc acattagttc cccggttaac tctacttact gccggcgagt tcctagggta      6660
     taccggtaac tggactagtg ctgttattca cccagaccct agaccgagac ctgcacgagc      6720
     catatttctc cccctcattg caggaatctc cctcaccgca tccttcatgg cggccggact      6780
     ggctggggga gccctaggtc acacccttat agaaagtaac aagctgtacc aacaatttgc      6840
     cgttgctatg gaggagtcag ctgagtccct tgcctccctc cagcggcagc tcacgtccct      6900
     agcacaggta accttgcaga accggagggc cttagaccta ctcactgctg aaaaaggggg      6960
     aacgtgtatg tttctaaagg aagactgttg tttctacata aatgaatcag gactcgtgga      7020
     agaccgagtc caacagttac gcaagttaag cacagaagta agaacacggc agtttgcttc      7080
     agctgcagac caatggtgga actcatctat gttttctctg ttagccccct tccttggacc      7140
     cctgctgagt ctactatttc tgcttaccgt aggaccttgt gttgttaaca gaattttgcg      7200
     gttcgttaaa gaaaggttta acactgtaca actcatggtc ctcagagccc aataccaacc      7260
     tgtaaacgct gaaacagaat cagacttata agacccaaga ttggctctaa aaaatacctg      7320
     aaaagaaagg gggggaa                                                     7337
//
ID   CERV2_LTR   repbase; DNA   ; PRI   ; 544 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   A DNA sequence of chimpanzee endogenous retrovirus CERV2 - long
DE   terminal repeat.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; CERV2; CERV2_LTR;
KW   Chimpanzee endogenous retrovirus; Long terminal repeat.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-544
RA   Skaletsky H., Hughes F.J., Page C.D.;
RT   "Original sequence of an endogenous retrovirus CERV2.";
RL   Repbase Reports 4(7), 192-192 (2004).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 544 BP; 150 A; 150 C; 120 G; 124 T; 0 others;
     tgagagaccc cagagaaaaa caccagatgg tcactagaaa aacaccggat ggccactaga        60
     aaaacaccag atggccagga gtcagggtgt gtcaatggct atcaaagaca ccagatgccc       120
     agggtagggc aaggagcccc tctccccccc agtgttccca gaactaaagc aggaaaacat       180
     ttccaggaaa tacctcctgc cacctataag ccccctgacc aaccagcgtg agacagctag       240
     ctcaggccat aattagaacc aaccagttac ttccaaacct cacgccctaa gacttttcaa       300
     atgtgtgacc caatcagctt attgtaacct ccccctgttt gaatttgtaa cctccccctg       360
     tttgaatttg tagtttttgc ctttataagc agtgtgtaac agtcattcgg ggtctcctgg       420
     cctcatacgc tggggaccct agcgcgctag taataaagag tgtctctttg ctgtaatctc       480
     cgtgtcgagt ggtctctggc ggcggcccta tcccgaagta agaatcttga gagaggttct       540
     aaca                                                                    544
//
ID   CERV1_LTR   repbase; DNA   ; PRI   ; 409 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   Long terminal repeat of chimpanzee endogenous retrovirus CERV1 - a
DE   consensus.
XX
KW   ERV1; Endogenous Retrovirus; Interspersed Repeat; CERV1; CERV1_LTR;
KW   Chimpanzee endogenous retrovirus; Long terminal repeat.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-409
RA   Skaletsky H., Hughes F.J., Page C.D.;
RT   "Consensus sequence of an endogenous retrovirus CERV1.";
RL   Repbase Reports 4(7), 190-190 (2004).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 409 BP; 122 A; 112 C; 88 G; 87 T; 0 others;
     tgaaaagagc cgggcacatt cctcagcccc gggctcaaaa caaacaagcc cagtacaaac        60
     acatcccatc ctcccatccc accacatatc accatatatc tcttaaactt cccccgggct       120
     caaaacaaac aagcccagta caaacaccac caggaaagtc tccgataagg ggacagatga       180
     ggggacagcc gttcaaagtt ttactgaaag agcgggaacc aaaagaattc ctttgttccc       240
     ctgtaacttt caggctataa aaaagcaaac actcgcattg ttcagggccc tcttgtatgc       300
     ggtggaatgg agggaccagg ttcgaacttg tagtaaagat ccttgccgct tggctttgac       360
     tctggactct ggtggtcttc tttggggaac aaacggtctg ggcataaca                   409
//
ID   ALRY-MINOR_PT repbase; DNA   ; PRI   ; 171 BP.
XX
AC   .
XX
DT   07-JAN-2005 (Rel. 10, Created)
DT   07-JAN-2005 (Rel. 10, Last updated, Version 1)
XX
DE   Minor repeat unit of chimpanzee alpha repetitive DNA from the Y
DE   chromosome centromere - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; ALRY-MAJOR_PT; ALRY-MINOR_PT;
KW   Repetitive sequence; satellite DNA.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-171
RA   Hughes F.J., Skaletsky H., Page C.D.;
RT   "ALRY-MINOR_PT.";
RL   Repbase Reports 4(12), 310-310 (2004).
XX
CC   [1] (Consensus)
XX
CC   The major repeat unit found in the chimpanzee Y chromosome centromere
CC   consists of 28 copies of the minor 171 bp unit.
XX
SQ   Sequence 171 BP; 50 A; 29 C; 36 G; 56 T; 0 others;
     cattctgaca aacttctttg tgatgtgtgc attcatctca cagagttgaa cctttctttt        60
     gattgagcag ttttgaaaca ctctttttgt agaatctgca agtggacatt tggagcgctt       120
     tgaggcctat ggtggaaaag gaaatatctt cacataaaaa ctagacagaa g                171
//
ID   CERV2_INT   repbase; DNA   ; PRI   ; 7584 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   A DNA sequence of chimpanzee endogenous retrovirus CERV2 - internal
DE   portion.
XX
KW   ERV2; Endogenous Retrovirus; Interspersed Repeat; CERV2; CERV2_INT;
KW   Chimpanzee endogenous retrovirus.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-7584
RA   Skaletsky H., Hughes F.J., Page C.D.;
RT   "Original sequence of an endogenous retrovirus CERV2.";
RL   Repbase Reports 4(7), 191-191 (2004).
XX
CC   [1] (Consensus)
XX
CC   Internal sequence of an endogenous retrovirus with ORFs
CC   for gag (1671-2153), pol (2370-4154) and env (5670-6233).
CC   CERV2 is absent from the human genome. It is similar to
CC   Baboon endogenous retrovirus strain.
XX
SQ   Sequence 7584 BP; 1971 A; 2229 C; 1774 G; 1610 T; 0 others;
     tttgggggct cgtccgggat tgctcgccgc ctgacgaccc ccgacccgca cggcgaagac        60
     acactcggcc cgggccatcg actgactgac gaccaggtgc cctcaggtac tttcgttttg       120
     ttttgttcgt ctatttgtgt tgccagctaa atcagaagag tactcaatct gtataagtgt       180
     ggaagggggg cagacgtgct cggcaccttc ccacttacgc cccgggggac gccctggcgg       240
     ttgtctggag gaaaattgac gattccgtca atctcttcac ctctgaaggc aggttctccc       300
     tgccatctga atccttcgtg gaaccgaagc accgccctgg cggttgtctg gaggaaaact       360
     gacgattccg tcagtctcct cacctctgaa ggcaggttct ccctgccatc tgaatctttt       420
     gtagaactgt ggcgccgatc tcttgccgcg cggcttctct gtgtgtgtgc agtctctgtt       480
     tttactattg tcttgtttgc ctgtgcgttg gaatctgtag acacgactat aggacagaca       540
     ctgacgactc ctctatcatt gaccctgact cacttccctg acatacgagc gcgagcccac       600
     aatctctctg tggaaattcg caaagggcga tggcaagcct tctgctcttc tgaatggccc       660
     accctcggcg ttgggtggcc ccaaggcggg acctttgacc tctccattat cttacaggtt       720
     aagacaaaag taatagatcc agggccacgc ggccatcctg accaggtggc ctatatcatc       780
     aactaggaag acctggttcg ggatcccccc ccttaggtga agcccttcct gccctcggct       840
     tccccttccc agtcgaccct cctcgccttg gaggcccccc gagaccagac cccggtcccc       900
     ctgaaacctg tcctcccgga tgagagtcag aaggacctcc tcctcctaga ctccctccct       960
     cctccgcctc acaatcccct cctttacccc cctccttacg ccacgccctc accccctgcg      1020
     ttgtctcctg ccccttcttc caccccctcg gctcctactc tttctccaac ctcttcttcc      1080
     accccctctc agatcccatc cccctctccg gccccacccg aactcgcccc tcagacccgc      1140
     ctcagacacc tcgcctccgc ttacggcggg ccgaggaccc tggcgaccag tccgcctggc      1200
     agtcctccct ttttcccctc cgcaccgtga accgcacggt ccagtattgg cccttctcgg      1260
     cctcagatct ctacaattgg aagacccata accccccctt ctcccaagac ccgcaggccc      1320
     tgacctctct gatagagtct attctcctca ctcaccaacc cacctgggat gactgccaac      1380
     agctcttaca ggttcttctg accacagaag agaggcaacg ggtcctcctc gaggctcgga      1440
     aaaatgtgcc agggccagga ggattcccga cccagctccc caacgagata gatgagggat      1500
     ttcccctcac ccgcccggat taggactatg aaacagcaac aggtagggag agtctccgaa      1560
     tctatcgcca ggctctgttg gcaggtctca aaggggctgg aaagcgcccc accaatttgg      1620
     ctaaggtaag aactattact cagggaaaga acgaaagccc agcagccttc atggaaaggc      1680
     tcctagaggg gtttcgaatg tacactccgt tcaatcccga ggccccagag cacaaggcca      1740
     ccgtggcaat gtcattcata gaccaagcgg cgctagacat aaagggaaag ctccaaagat      1800
     tggacgggat ccagacctat gggctgcagg aactagtgag ggaagcagaa aaggtttata      1860
     acaaaagaga gactactgaa gaaaaagaag ctaggctagc aaaggaacag gaggagcggg      1920
     aagatcgacg agatcgtaag agagacaggc atttgactaa aatcctggca gcagtagtga      1980
     cagggaaagg gccagggcca gggagagagg ggggagaacg aaggcgcccg aaggtggata      2040
     aagaccaatg tgcctattgc aaggaacgag gacattgggt caaggaatgt cctaaacgtc      2100
     ctaaggaccg gaagaagccc actcctgtcc tgaccctggg agaggacagt gattaggggc      2160
     gtcagggctc cgaagccccc cccgagcccc ggctaaccct ttctataggg gggcgcccca      2220
     ccacctttct agtggacacc agggcccagc attcagttct gacaaaagca gacgggcctc      2280
     tttcatcccg cacctcttgg gtccaaggag caacaggagg aaagctgcac aagtggacga      2340
     cccaccgaac agtaaacctt ggaaaaggta tggtgactca ttctttctta gtagtacctg      2400
     aatgcccata tccccttctg gggcaggatc tgttgaccaa gctcggagcc cagatacatt      2460
     tctcagagag aggggcccag gtactgggtg aggatggtca gcctatccaa attctgaccg      2520
     tttccttgca agatgagtac cggctttttg agactcccaa cttcaccagc cctcccgata      2580
     attggctgca agaatttccc caggcttggg cagagacagg gggacttgga ctggcaaaat      2640
     ttcaagcccc gattatagtt gacctcaaac ccaccgcagt gcccgtgtcc attaagcaat      2700
     accccatgag ccgagaagcc cgtatgggca tccaacagca tgttaacaaa tttctggaat      2760
     taggagtctt acggccatgc cgctcacctt ggaatacgcc actccttccg gtaaagaaac      2820
     ctggtaccca agattatagg cccgtccagg acttaagaga aattaataag agaaccatgg      2880
     acatacatcc tacagtccct aacccttaca acctgctcag taccttgaga ccagaccaca      2940
     actggtatac agtactagac ctaacagatg cattcttttg cttacccctg gctccccaaa      3000
     gccaagagct ttttgccttt gaatggaagg acactgagag gggaatctca ggccaattac      3060
     cttggactcg gcttccccaa gggttcaaga actctcctac cctctttgac gaggctcttc      3120
     accgggactt ggctgatttt cacaccccgc acccagattt aactctgctc cagtatgtag      3180
     atgacctcct cctggcagcc cccactaaag aagcctgcct acagggcacc aggcaactgc      3240
     tccaggagct cggagaaaaa ggataccaag catctgccaa gaaagcacaa atctgccagg      3300
     ctaaggtaac ctacctagga tacatcttga gtgaagtaaa aaggtggctc acccctgggc      3360
     ggatagagac tatagcccgc attccgccac cccggagccc caaggaggtg cgtgagtttc      3420
     tgaggactgc cgggttctgc cgtctgtggc tacccggttt tgctgagtta gcggccccca      3480
     tttatgccct caccaaaggg agcaacccct ttacctggct ggaagaacac caacaggcct      3540
     tcgaaacttt aaagaaggca ctcctctctg cccccgccct cgggctacct gacacatcca      3600
     agccttttac cctctatgta gacaagagac gggggatagc caaaggggtt ttaacccaaa      3660
     aactggggcc ctggaaaaga ccagtagcct acttatctaa gaaactggac cctgtggcgg      3720
     ctgggtggcc cccttgcctc cacattatgg cagccaccgc tatgctagtc aaagactctg      3780
     ctaagttaac ccttgggcaa ccattgactg tcattacccc gcatgccttg gaggccatag      3840
     tgcagcagcc cccggaccgt tgggtcacca atgctcgtct aacccactac caagccctcc      3900
     tactagacac ggaccgcgtc cgctttggcc ctccggtcac tctgaatcct gccaccttgc      3960
     tacccgtacc ggaagtcccg ctgagccccc acgactgtcg acaagtgctg gcggagaccc      4020
     acgggactcg agaagacctc caggaccaca aactcccaga cgcagaccat acttggtaca      4080
     cagacggtag cagcttcatg gacgcaggta cccggagggc gggggcggcg gtagtggatg      4140
     gatatgccac gatataggca caggcactgc ctcccggaac gtctgctcag aaggctgaac      4200
     taactgctct aacaaaggcc ttggagctat cgcaggggaa aaaggctaac atctacacag      4260
     acagtcggta tgcctttgca acagcccaca cccatgggag catttacaag aggcgagggc      4320
     tcctaacatc agaaggaaaa tcaaaaataa ggctgaaata atcgccttat tgaaggccct      4380
     cttcctccct aaaaaggtgg ccataattca ttgtcctgga catcaaaaag gacctgatcc      4440
     cgtcgcccaa ggtaacaggc aagctgacca cgcggccaag caggctgcta gaatagagac      4500
     attgacctta gtttcggaaa ccagagaggc tgaccggata tcccctccca caagttatat      4560
     ctatacacca gaggaccagg aagaggcagt agccttagga gccatagaaa accaagagac      4620
     taaaaattag gaaaaagacg ggaaaacagt tctcccacga aaagaggcca cggccatggt      4680
     gcagcagatg cacgcctgga cacatctaag tagtagaaaa ctaaaacttc tcattgaaaa      4740
     gactgacttc ctaatcccca gggtcggcac cctcctggaa caagtaacgc tcgcttgcaa      4800
     ggcctgccaa cgagtaaagg ccggggccac gcgagtcccg gcggggataa ggacacgggg      4860
     caaccgccct gggacctatt aggaagtaga ttttactgaa agtctcacca tgcgggatat      4920
     aaatatttat tagtatttgt agacaccttt tcaggatagg tagaagccta ccccacccag      4980
     caagaaacgg cccacatagt ggccaagaag atattggaag aaattttccc caggttcgga      5040
     ctccccaagg taattaggtc agacaatagg ccagccttcg tctcccaggt aagtcaagga      5100
     cttgccaaaa tactggggat taattggaaa cttcattgtg cttataggcc ccagagttca      5160
     ggacaggtag aacggataaa cagaactatt aaagagacct gaacaaaatt gaccttagag      5220
     actggcttaa aagattggag acgtctccta tccctagctc tcttgagggc ccgaaataca      5280
     cctaatcgct ttaggctcac cccttatgaa atcctctacg ggggaccacc tcccttgtca      5340
     accttgcttg attctttctc cccctctgac cctaagactg acttgcaggc tcggctaaaa      5400
     ggactacagg cggtgcaagc ccaaatttag gctcctttgg cggaactgta ccagcctgga      5460
     cacccacaaa ccagtcatcc tttccaagtg ggagactccg tctatgtcag acgacatcgc      5520
     tcccaaggat tagaaccccg gtggaaagga ccatgcatcg ttctcctcac cacacccact      5580
     gccgtgaaag ttgacggggt cgccgcctgg atccacacat cccacgtgaa agctgctccg      5640
     aaggcgccag aatcagcatc gcctgagaaa tggagacttc gtcgctccag ggaccccctc      5700
     aagataagac tctcccgtgt ctaacccccc acctactgtt agcccttttc cttccctggg      5760
     ttatcggaag cagcaacccc catcaaccct atcgattgac ttggcaaata actaattttg      5820
     aaacccatga agtcctcaac gagacttcac atatagcccc tttaaacacc tggttccccg      5880
     acctctactt taatcttgac aaaatagcca tgataaatga aatggaaggt ggtgagtgga      5940
     gaaagcaagc gagaaaggtc tcccttagtc gaaacgggtt ttatgtttgc cctggatttc      6000
     ggacaggacc gatgaaaaag acctgtggtg aaataatgtc cctatactgt gcaagttggt      6060
     catgtgtaac aactaatgat ggagaatgga aatggaaaac ccaactctgg tatgtgacca      6120
     tgtcctatgt ccagccatgc actaggacac ggtattcggc cacctgtaac ttaatctgtg      6180
     tcaaatttga ggaggccgca aaaactgacc cccgttggac aaccggacta atttgaggcc      6240
     taaatttata ccaatctccg gcatttggac tccctatcca aattaggcta ctagtcaacc      6300
     cggtctcagc ctcggtccca gtaaggccaa acccggttct aacagggagg gcaccttctc      6360
     agtcagagag ccggcaaaaa gtcccaacca ccgtttcccc atctcctccg ccatccgaat      6420
     ccccattggc actcccaagg gccccctcgg tgctcccggg gaccacccgc ctgcctcccg      6480
     acctggaagc aaccagtaga ctcttcaacc tcatcagagg cgcttacctc gccctgaacc      6540
     agacaaggcc taaatccacc acctcctgct ggctctgcct ggccacaggc cccccttact      6600
     atgaaggtat tgcctctgtt agtaatttta ctaattccac tagtcatttt ggatgtgcat      6660
     ggcaccagca caagaaactt accctagcag aagtgtcagg gtcgggaacc tgtataggcc      6720
     aggtgccccc cagtcaccaa catctctgta ataaaaccct ggcagtaccc agaactagcc      6780
     actatctaat accctccggg ccagactggt aggcttgcaa aaccggactt acccgttgtg      6840
     tatccacagc tgtcttcaac gacagtgagg attactgtat attagtacaa gttgtgcccc      6900
     aagtttatta ccaaactgga gagtctttta aatcccagtt tgagcaaaaa tacctcacta      6960
     gaatgaagag agaacctgtt tccctcaccc tcgctgttat gctaagatga ggagtagcgg      7020
     ctgaggtcag gacaggaacc gcggcattag tgcgtggcag ctaccaccta caacaactca      7080
     gggcagccgt agatgaagac ctcagggcca tagaacactc cattaccaaa cttgaagaat      7140
     ctctaacctc cctgtccgaa gtagtactcc aaaatcgacg gggactagat ataatttttc      7200
     taaaagaggg cgggctctgt gctgccctta aagagcagtg ttgcttttac gctgatcatt      7260
     ccggagtagt taaagactct atggccaaac ttagaaaaag actagatgat agacagaaag      7320
     aaagagaatc ccaacaaaac tggtttgaaa cttggtacaa ccaatccccc tggtttagta      7380
     ctctcatctc cactatccta gggcccctga ttctgtttat gcttatttta actttcaggc      7440
     cctgcatttt taaccgcttg cttgctctaa ttaaagacag attaaatata gtgcatgcta      7500
     tggtcctgac tcagcggtac caggcagtca agactaacga agagactcaa gattgagcct      7560
     ctaagtcaca aaaagaggag ggaa                                             7584
//
ID   ALRY-MAJOR_PT repbase; DNA   ; PRI   ; 4896 BP.
XX
AC   .
XX
DT   07-JAN-2005 (Rel. 10, Created)
DT   07-JAN-2005 (Rel. 10, Last updated, Version 1)
XX
DE   Major repeat unit of chimpanzee alpha repetitive DNA from the Y
DE   chromosome centromere - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; ALRY-MAJOR_PT; ALRY-MINOR_PT;
KW   Repetitive sequence; satellite DNA.
XX
OS   Pan troglodytes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Pan.
XX
RN   [1]
RP   1-4896
RA   Hughes F.J., Skaletsky H., Page C.D.;
RT   "ALRY-MAJOR_PT.";
RL   Direct Submission to Repbase Update (2004).
XX
CC   [1] (Consensus)
XX
CC   The major repeat unit found in the chimpanzee Y chromosome centromere
CC   consists of 28 copies of the minor 171 bp unit.
XX
SQ   Sequence 4896 BP; 1451 A; 856 C; 1024 G; 1565 T; 0 others;
     gtggaggaaa aggaaatatc tccacctaaa aactagacag aagcattctg gcaaacttct        60
     ttgtgatgtg tgcattcatc tcacagagtt gatccttact tttcattgag cagttttgaa       120
     acactctttt tgtagaatct gcaggtggat atttggaggg ctttgaggcc tctggtggat       180
     aacgaaatat cttcacataa taactagaca gaagaattct cacaaacttc tttgtaatgt       240
     gagcattcgt ctcacagagt tgaactgttc ttttgactga gcagctttga aacagtattt       300
     ttataaaatc tgcaagtgga catttggatc gctttgaggc ctctggtgga aaaggaaata       360
     gcttcacaat aaaactggag agaagcgttc tgacaaactt ctttgtgatg tgtacattca       420
     tctcacagag ttgaaccttg cttttgattg agcagttttg aaacacactt tttgtagaat       480
     ttgaaagtgg acctttggat tgctttgagg cctatggtgg aaaaggaaat atcttcacat       540
     aaagactaga cagaagcatt gtgacaaact cctttgggat gtgtgcattc aactcacaga       600
     gttgaacctt tcttttgact gagcaacttt gaaacactct atctgtagaa tctcccagtg       660
     gatatttgca gtggcttgag gcctctgacg gaaaaggaaa tatcttcaca taacaactag       720
     acagaagcac tctgacaaac tattttgtga tgtgtgcatt cttctcacag agttgaacct       780
     tacttttcat tgaggaattt ttaaatactc tttttgtaga atctgcaaga tgacatttgg       840
     agcgcttcaa ggcctatggt ggataacgaa acgtcttcat gtaataacta ggcagaagca       900
     ttatgagaaa ctccaatgtg atgtgtgctt tcgtatcaca cagagtttca cttttctttt       960
     gattgagcag ctttgaaaca ttctttttgt agaatctgaa agtggatatt tggagctctt      1020
     ggaggcctat ggtggataac gaaatgtctt cgtataataa taactagaga gaagcattct      1080
     gagaagcttc tttgtgacgt gagaattcat ctcacagatt tgaaccttcg tttgattgag      1140
     tagctttgaa gcactctttt tgtagaatct gcaaatggac atttggagcg gtttgaggcc      1200
     tatagtggaa aaggaatcgt cttcacataa aaaggagaca gaagcattct cacaacattc      1260
     tttgtgacat atgcattcat ctcacaaagc tgaaccttac ttttgattga gcagtttgga      1320
     aacccccttt ttctactatc tgcaagtgga cctttggagt gctttgaggc ctatggtgga      1380
     aaaggaaata tcttcactta agaagtagac agaaggattc tgataaattt ctttgtgatg      1440
     tgtgcattca tctcacagag ttgaaccttc ctctggttga acagttttga aacactgttt      1500
     tcgtagaatc tgcaagtgga cattttgagc gcttggaggg ctatggtgtt aaaggaaata      1560
     tcttcccata agaactagac acaagcattc tgacaagctt ctttgtgatg tgtgcattcg      1620
     tctcacagag ttgaaactat cttttgattg agcagctttg aaacactctt tctgtagaat      1680
     ctgcaagtag gcatttggaa ggtttggggc ctgtggtgga aaaggaaata tcttcacaca      1740
     aaaattagac agaagccctc ggacaacctt ctttgtgata tgtgcactta tcacacagag      1800
     tgaaacctta gtgtttattg agcagttttg aaacaccctt tttgaatgat ctgcatgtgg      1860
     acatttggag tgctttgagg tctattgtgg caaaggaaat atcttcacct aagcactaga      1920
     cagaagcatt ctgagaattt tcttgtgata tgtgtattca tctcacagag ttgaacctta      1980
     ctttggattg accagttttg aaacacgaaa aggaaatatc ttcacattaa aactagacag      2040
     aaggattttg acaaactact ttgtgatgtg tacattcatc tcacagagtt gaaccttact      2100
     ttccattgag cagttttgaa accttcctct ggggaatctg caagtggatt tttggagcac      2160
     tttgaggcct ttgctggaaa ggaaatacat tcacaaaaaa cctagacaga agcattctca      2220
     caaactactt tgggatgcat gcattcatct cacggggctg aaccttgctt tacattgagt      2280
     agttttgaaa cactcttttg tagcatctgc aagtggacat ttcgagtgct ctgaggccta      2340
     cggtggataa cgaaatatct tcatatcaca gctagacaga agctatctga gaagctttct      2400
     atgtgatgtg tgcattcatc tcacagagtt gaaccttact tttcattgaa cagttttgaa      2460
     acactctttt ggcagaatct acaagtggac ctttggaacg ctttgaggcc tacggtggaa      2520
     aaggaaatat cttcacataa gaactagaca gaagcatact gacaaatttc tttttcgtgt      2580
     gcgcattcat ctcacagagt tgaaagttaa ttttcattga gcagttatga aacatacttt      2640
     ttgttgaatc tggatgacga catttggagc actttgaggc ctatcacgga aagggaaata      2700
     tcttcatata aaaattagat ggaggcattc tgaaaaacat ctttgtgatg tgtgcattcc      2760
     tctcacagag ttgaaccttt cttttgattg accagcttcg aaatgctctt ttagtagaac      2820
     ctggaagtgg acatttggag ccttttgtgg cctaatgcgg aaaaggaaat atcttcacgt      2880
     aaaaagtaga tagaagcatt ctgacaaatt actttatgct gtgtgcattc atctcacaga      2940
     gttgaacatt tcttttcatt gaccagtttt gaaacactgt tttagtagaa tctggaagtg      3000
     gacatttgga gcaccttgag gcctgtggtg gaaaaggaaa tcccttcaca taaaaactag      3060
     acagaagcat tttgacaaac tcctttggat gtgtgcatgc atctcatggc gtggaatatt      3120
     tctgttgatt gagcagcttt gaaacactct ttttctagaa tcttcaaggg gacatttgga      3180
     gcaatttcag gcctatggtt caataggaaa tatcttcaca taaaaactag acagaagcat      3240
     actgacaaac ttctctgtga tgtgtgcata catctcagag agttgaacat ttcttttgat      3300
     agaccagctt tgaaacactc catttgtaga atgtgggagt ggacatttgg agtgctttga      3360
     ggcttatggt agaaagggaa atatcttcat ataaaaacta gacagaagca ttctgaaaaa      3420
     cttctttgtg atatgtgcat tcatgtcaaa gagttgaact tttcttttga ttgaacagtc      3480
     atgaaactct ctgtagaatc tgcaaacgga cattggttgt gctttgaggc ctatggtgga      3540
     aaagataata tcttcacata aatactagtc agaagcattc tgaaaactgt ctttgtgata      3600
     cgtgcattca tctcacagag ttgaacctca cttttgattg agcagtttga aagacttttt      3660
     ttgtactata ggaaagtgga taattggagt gctttgaggc cgatcatgga aaattaaata      3720
     tcttcacata agaacaagac agaagcattc tgacaaattt ctttgtgata tgtgcattca      3780
     tctcacagag ttgaacctta attttcattg agcagttttg aaacactctt tttgtagaat      3840
     ctgcaagtag tcatttggag cgctttgagg cctttgttgg aaaacgaaat gtcttcatat      3900
     aataactaga cagaagcatt ctgagaaact tatttgtgat atctgcactc atctcacaga      3960
     gttgaatctt tcctttgatg gagcagcttt gaaacactct tttcgtagaa tctgctagtg      4020
     gacctttgca gcgctttgag gcctatggtg gaaaaggcaa tatcttcaca taaaaactag      4080
     acagaagcat tctgacaaac ttctttgtga tgtgtgaatt tacttcatag atttcaactt      4140
     tcttgtgatt gagcagtttt gaaacactct ttttgtggaa tctgcaagtg gacatttgga      4200
     acgctatgaa gcctaaggtg gaaaaggaaa tatcttcaca taaaaattag acggacgcat      4260
     tttgacaaac ttcttcgaga tgtgtgcatt catctcacag agttgaacct ttcttttgat      4320
     taagcaatct tgaaacactc tatttgtaga atctgcaagt ggatatttgt tgtgctttga      4380
     ggcctacggt ggaaaaggaa atatcttcac ataaaaactt gacagaagca ctctgagagc      4440
     cacctttggg atgtgtgcat ttatctctca gacttgaccc ttacttttga ttgagcatct      4500
     ttgaaagacc acttttgtaa taaatgcaag tggacattcg aagtgctttg aggcctacgg      4560
     tggaaaagaa aatatcttca catcagaagg agacagaagc attctgacca atttctttgt      4620
     ggtgtgtgca ttaatctcac agagttaaac cttactttca attgagccat tttgaaacac      4680
     ttttcgtaga atctgcaagt ggacatttga agcgctttga ggcctagggt cgaaaaagaa      4740
     atatattcac ataaaaacta gatggaagcc ttctgacaaa cttctttctg atgtgtgcat      4800
     tcatctcaca gagttgaacc tttcttttga ttgagcagct ttgaaaccct ctttttgtag      4860
     aatttgcatg tgaacatttg aagcgctttg aggcct                                4896
//
