ID   BLOODI      repbase; DNA   ; DRO   ; 6613 BP.
XX
AC   .
XX
DT   19-NOV-1998 (Rel. 3.2, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Drosophila LTR retrotransposon BLOOD, an internal portion- a consensus
DE   sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; LTRBLD_DM; BLOODI;
KW   protease; BLOOD.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6613
RA   Wilanowski M.T., Gibson B.J., Symonds E.J.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 92, 12065-12069 (1995).
XX
RN   [2]
RP   1-6613
RA   Kapitonov V.V., Jurka J.;
RT   "BLOODI.";
RL   Direct submission to Repbase Update (1998).
XX
CC   [2] (Consensus)
XX
CC   LTR of BLOOD retrotransposon is listed in REPBASE as LTRBLD_DM.
CC   All copies of BLOOD were found in chromosome 2; they have 5 bp
CC   long target site duplications (all targets are different).
CC   Some of the copies are identical, including LTRs. BLOOD is
CC   presumably an active LTR-retrotransposon. BLOOD is related to
CC   MDG1 and DM412 retrotransposons found in Drosophila.
XX
SQ   Sequence 6613 BP; 2616 A; 1224 C; 1155 G; 1618 T; 0 others;
     tggcgaccgt gaggcaggag cctgcgatct gaggactact gaggaaatgc tgctaatatt        60
     gccgatttga tttgggaatt ctaaacagcg acaacaggtg tgagaggcag gccgcccctt       120
     acaccagtgc gggagaccta gagacgggac actgatgaaa aaaaaaagaa acaaaaatac       180
     tgagtgagta gagtgtggta atgggcaaac gcggatgtca ggaaatcaaa aataaaggta       240
     tagcacatat taagtggcta tgatatacaa ataaaacacc gcccccatgg gcaacggcac       300
     agaaattaac tgccgaatta gactttctga aagaaaacct ccagcaaaga aagccgaata       360
     ccacaactca ctcagcaaaa atagaaataa tcaatgaaga aataactgaa aattcaacat       420
     cacccaagcc gaaaagaccc gacgtctgca tgaacgactg ccctcgacca ttgtaagccg       480
     caacagcaat tagcacggca tcctgcgagg gtaggattag gataaaggat aaaggattcc       540
     accggcgcgc cgcacatgac aacagcgaat gtctaccaag cagacgttcg aacaccctgc       600
     tcctgtcgag caaagggatc tgccaagtat caaagaggta atagaggtag atccgtccgc       660
     gggaccaaag cccttgacca tacaagagta caaggcacgg actgcagcga gggagcagcc       720
     acctaaaaag aagaggggtg gccgccggat taagttgctc agcgcccgga ggctcaacat       780
     cgaactactg aagacggcaa ctaatgagga agaccggcag cgctacaaag agcgccttgc       840
     agccatcaat caacaacttc gtggtgcgaa gtaaagcggc gggctgcgtt atacgccata       900
     gcctcaaccg cccaaatatt atattaatgt tgtcgatgcg gtttccgctg caacaaaatt       960
     actaacttat cagggaccca tttcataact aacacattat actcagtcct aaacttaaaa      1020
     taagtaataa tattgtaaaa ttgcaaattg caaccgatgt aaactgagta taatgaattc      1080
     atctatcaag taaaaatatg tttaacaaca gtttagacct attaaaattt cgagctatat      1140
     ttatatctga tcgagataac aataattgac caattctcaa agttaaaatt ctatttgtac      1200
     ttttgatata caaataaaga ctaattttcc ccatatcaaa atgggacata agtcgtggat      1260
     acaaccccac agttaaattc aatgtactta ctatttttga ttttagttat cctatcagcc      1320
     ttttaacctg gccttaaaac tttatcagtt tcacaaaaga tcgttgaaaa gacttacatg      1380
     agtcgagcca atgatttaga caaaatctaa tagaaactac accaaaaagg tacaagtgcg      1440
     attacatcgc taaaaggtac atacatggaa tggctaaact taaccatatc cataaacaat      1500
     attagagatg cttttgataa atcctataaa tgtattaata aaaccgcgct gatcaaaact      1560
     cagacgctta tttttcacat aaaggtattg ataacacaat acaacacatt acaaaaccta      1620
     atagtaacaa acaaaagcaa actcactgaa gaacataaag tccaatgctt caaagttctc      1680
     agttcatttg gtaaaagact acataatacc agcgttagac acagtattat aatagaagtc      1740
     ccaacagaac taaccaaaat agcagaattc gacgaaagcc agttaagaga cttggacgag      1800
     tcgcagccgt tagaagattt agatatcgaa agcgatatcg aatcaataga agaattaaaa      1860
     tttaataccg tacaaccaaa tacaagaaac atggccaacg cattagaagc tcagagagca      1920
     tacgttaaac aggtatctgc cacagtacct gaattcgatg gtaagaaact ccatttaaac      1980
     aggtttgtga cagcacttaa gttgacggat ctaactaaag gagatcaaga aactttagca      2040
     gtagaggtca taaagaccaa aattattggc ccattaaact ataaagtaga acatgcgaca      2100
     acgatacagg caataattac catattgcag gcaaacgtaa aaggcgaatc gcctgacgtt      2160
     ataaaggcca aattaataaa tgcccaacaa agaggcaaga ccgcgtctca gtatgttaca      2220
     gaaatagaca gtatgcgtaa gcagctcgag gcagcttaca tagacggcgg attagacgcc      2280
     gataatgctg acaaattcgc gactaaagag tcgatatcag caatgaccaa aaactgtgcc      2340
     aacgaggcac ttaaaatgat cttaactgca ggtacattta gtacattcaa cgacgcaatg      2400
     gaaaaatacc tacattgcag tacagaaata accggcaatt caaatacagt cttattctat      2460
     aatgggaata atagacgtgg taattataat gcctactatc gtggtagagg cagaaataat      2520
     tataaccata attataacca gaattataac caaggttata ataataacaa cagaggtcgc      2580
     ggaggctacc gcggccacgg taataacaga gacggaggta accgaagggg taaccaaagt      2640
     cagaataata ataacaaccg aaatgtgcgt aacgtacaat cggaaaacag ccagaccccc      2700
     ttaagcgatc aacagtaaaa gtgtttaaag taaacctaaa tctgagtatt ttcattaaga      2760
     caaaaaacca tgaaacaaac acagttctta cattactaat agacacaggt gcagaaattt      2820
     cattgctaaa agccaaagca aaggaatata ataatataaa tttcagtaat atatcaaata      2880
     ttacaggtat tgggcaagga accatacagt ctataggtac agtagatctt gacatacgca      2940
     ttcaggatgt tctagtgcca catgaatttc atgtagtacc tgagaatttt ccgataccat      3000
     gcgatggcat aatcggaata gattttatca agaaatacaa ttgcgtatta gagtttcaaa      3060
     ataacaaaga ctggttcaca ataagaccca ataacttcag tagacagatt agtgtaccaa      3120
     ttacacataa cttagactcc aacacactct tattgccagc tagatgcgaa gtaatcagac      3180
     aagtcaaatt actcactaac gaaaaaacgg tggtagtacc aaatcaggag ctgcaaccag      3240
     gtataatagt agcaagcacc attgccgata gcaaaaacgc attgattcgc attataaata      3300
     caaataataa agacgccata atagatagcg cgaagatcaa atgcgaatca atgaaagact      3360
     atgacatttt tacaacacca gtagaaaagg aaaatagaac tgaagaaatt ttaaaacaat      3420
     taagattccc taaacaattc aataatgaac taactaagtt atgcaccgag tttagcgata      3480
     tttttggtct agaaacagaa ccaatatcgg ctaacaattt ctacaaacaa aaactcagat      3540
     taggggaaaa aacaccggtc tatataaaaa actatcgcat ggcagatagc caaaaaccag      3600
     aaatcgccag acaggtaaaa aaattaatag atgatggaat agttgaacca tcaatgtctg      3660
     aatataatag tccattactt ttggttccaa agaaaccact tccgaattcc acggaaaaaa      3720
     gatggcgatt agcagttgac tatcgtcaaa taaataagaa actattatca gacaaatttc      3780
     cacttccaag aatagaagat attcttgatc aattaggaag agcaaagtat ttttcatgtc      3840
     tcgacctaat gtctggattc caccagatag aactagaaaa aaggtataga gatataacgt      3900
     cattttcaac agccaatggc tcatatcgct tcacgcgatt accatacgga ctgaaagtag      3960
     caccaaactc cttccaacgt atgatgacac ttgcattttc tggtcttgaa ccatcgcaag      4020
     catttctata tatggatgac ttagtagtaa taggttgttc agaaaaacat atgctcaaaa      4080
     atttgactaa cgtattcgag ctatgtagac gacataattt gaaactacat ccagggaaat      4140
     gttctttctt tatgaaagaa gtaacatatt tgggtcacaa atgtaccgat aaaggtatac      4200
     tcccagatga caccaaatat gaagttatag aaaaatatcc tataccaaca gatgccgaca      4260
     gtgctaggcg tttcgtagcc ttctgtaatt attacagacg tttcattaaa aatttttctg      4320
     atcattcacg ccacttaacg aggctttgta aaaagaatgt tcaattcgaa tggacagcag      4380
     aatgcaatga tgcattcgaa taccttaaaa cagaattaat gaaaccaaca ttactacagt      4440
     acccagattt cggtaaagaa ttttgcataa caaccgatgc tagtaaacag gcatgcggag      4500
     cggtacttac acaagatcac aatggtcaac aacttccagt ggcatacgct tcaagaatgt      4560
     tcactcaagg tgaaagtaat aagtccacta cagaacaaga attaacggcc attcattggg      4620
     ccataaatca ttttcgacca tacatatatg gcaagcattt catggtaaaa agcgatcata      4680
     gaccattgtc atacctattc tctatgaaaa atccaagttc aaaactcact cgtatgaggc      4740
     tggatttaga agagtatgac tttactgtag aatatcttaa ggggaaagat aaccatattg      4800
     cggacgcctt gtctcgcata acaataaaag atctgaaaac aatcaacaga gaaatattaa      4860
     aagttaccac cagatcaaaa gctaaacagg aaaattcctg taaggacgaa gcaatagtca      4920
     aaatacaaga ggaaaaagag caaacaatag aaaagcccaa agtctatgaa gttgtcaata      4980
     ataatgacac aaagaaatat gttttaatca aaatagataa acacaagtgt ttattaaaac      5040
     gaggaaaaac aattgtttca cgctttgatg ttgatgactt gtattctaat gaaacatttg      5100
     atctaaatca attctttcaa aggcttattt caaaagccgg aatgcataaa ataacaaaaa      5160
     tgcgaatatc accaagcgaa cagatgttcc aatttgtatc actaaatgaa tttaaaataa      5220
     agggcaaccg agtactcgaa aaagtagaac tagctattct acaaaaggtg ataattatag      5280
     acaaaaatga cgaagctcag attaaagaaa ttttgacaaa attccatgat gatcctatag      5340
     aaggaggcca cactggtatt tcgcgaaccc agtcaaaaat caaaagattt tattattggc      5400
     cccagatgac caagacaatc tcaaagtatg taaagacttg tttgaaatgt caacaagcca      5460
     aaattacaac acatacgaaa actccattaa cattgatgcc aacgccagca acagcatttg      5520
     atactgtttt aattgatacc attggtccac taccgaaatc ggaagacgga aatgagtatg      5580
     cagttacaat catatgcgat ctaaccaagt ttttagtaac tattccaaca ccaaataaaa      5640
     gtgctaaaac agttgcaaag gctatatttg aattatttgt actgaagtac ggtccaatga      5700
     agacgttcat tacagatcaa ggtacggaat acaaaaattc acttatgaat gaattatgca      5760
     aatatatgca tatagaaaat ctaacatcta gcgctcacca tcatcaaact ttaggaacaa      5820
     tagaaagaag ccaccgaact tttaatgaat atatacgttc atacatatcg gttaacaaaa      5880
     gtgattggga catttggtta ccatatttca cttattgctt caatacaaca ccctcaatag      5940
     tccatgacta ttgcccatac gaactagtat ttggcagact acccagacaa ttcaaagatt      6000
     tcagtaagat aaacaaaata gacccaatat acaacttaga cgactactct aaagagctta      6060
     aatgcagact agaattgtcg tacaacagag caagaagaat gttagaaaaa gcaaaagcgg      6120
     atagaaaatt aagatatgat aggaatacaa ataatttcga attaaaaata ggagataaag      6180
     tattacttag aaaagaaaca ggtcataagt tagataaaag atatgaaggt ccttatgacg      6240
     tagtagatat aggaataaat gacaatataa ccattaaaac aggaagtaag aaacaacaaa      6300
     tagtacataa agataggcta aaaaagcaca aatagaatga aaaaaaaaaa gggcaatcaa      6360
     tgccaaacct ttcataataa aacttaaata acggcctgat cagccaaaac aatataacaa      6420
     agacatagat ataatcgaat ttttattaat tcaaaataca tacatatttt ttctttattc      6480
     atttaaaaat tctatatcat aaataatgtt aattcattaa aaataatatt taagtaattt      6540
     ttattttata atggtaatat agttgataga aaataacttc atttctttac gttattttaa      6600
     aaaagagggg agg                                                         6613
//
ID   UBX_DM      repbase; DNA   ; DRO   ; 225 BP.
XX
AC   K01963;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Drosophila repeat, from Ultrabithorax locus (Ubx) of the Bithorax
DE   complex (BX-C).
XX
KW   Repetitive sequence; DMUBX; UBX_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-225
RA   Scott P.M., Weiner A.;
RT   "Structural relationships among genes that control development:
RT   Sequence homology between the Antennapedia, Ultrabithorax, and fushi
RT   tarazu loci of Drosophila.";
RL   Proc. Natl. Acad. Sci. U.S.A 81, 4115-4119 (1984).
XX
DR   GenBank; K01963; Positions       1     225.
XX
SQ   Sequence 225 BP; 64 A; 60 C; 65 G; 36 T; 0 others;
     aatgctttcc cattccgatc tacaggtaca aatggtctgc gaagacgcgg gcgacagaca        60
     tacacccgct accagacgct cgagctggag aaggagttcc acacgaatca ttatctgacc       120
     cgcagacgga gaatcgagat ggcgcacgcg ctatgcctga cggagcggca gatcaagatc       180
     tggttccaga accggcgaat gaagctgaag aaggagatcc aggcg                       225
//
ID   MDG3_DM     repbase; DNA   ; DRO   ; 4986 BP.
XX
AC   X95908;
XX
DT   06-FEB-1997 (Rel. 3, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Internal part of D.melanogaster MDG3 retrotransposon.
XX
KW   LTR; mobile dispersed genetic element; retrotransposon MDG3; DMMDG3;
KW   MDG3_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4986
RA   Avedisov N.S., Il'in V.I.;
RT   "Drosophila retrotransposon mdg3: general structure and functional
RT   domains of a full-scale copy.";
RL   Dokl. Akad. Nauk 344(6), 823-826 (1995).
XX
RN   [2]
RP   1-4986
RA   Dzhumgaliev B.E., Mazo M.A., Baev A.A., Gorelova V.T.,
RA   Arkhipova R.I.;
RT   "Structure of long terminal repeats of transcriptionally active and
RT   inactive copies of the mobile dispersed gene MDG3 in Drosophila
RT   melanogaster.";
RL   Genetika 22(3), 368-377 (1986).
XX
RN   [3]
RP   1-4986
RA   Ilyin V.Y., Arkhipova R.I., Gorelova V.T., Schuppe G.N.;
RT   "Detection of RNA reverse transcription intermediate forms of the
RT   mobile dispersed genes mdg1 and mdg3 in Drosophila cells.";
RL   Mol. Biol 19, 162-172 (1985).
XX
RN   [4]
RP   1-4986
RA   Avedisov S.;
RT   "Direct Submission.";
RL   Direct submission to Repbase Update (1996)S. Avedisov, Engelhardt
RL   Institute of Molecular Biol., RAS , Department of Genome Mobility,
RL   Vavilov Str., 32, Moscow, 117984, RUSSIA.
XX
DR   GenBank; X95908; Positions     267    5252.
XX
CC   LTRs of DMMDG3 are named LTRMDG3
CC   CDS 29..4513.
XX
SQ   Sequence 4986 BP; 1898 A; 877 C; 947 G; 1264 T; 0 others;
     aatctcagaa gtgggattaa taatccaaaa tggacgataa aatcatcctg aacgactttt        60
     cgctgacaac cctaaaagat tggctacgta ttctgggcca aaatacggag ggcacaaaaa       120
     ccgaattaat cgcgaggctg caagacatcc caacggcagt tcggggcgat tgtccaccgg       180
     agcaccccca gaaaaacgct ccaccaggaa acgacatttt ttcttcactg gattttcaga       240
     attgtgaaat taacaccgat cacgtaagtg tgaatgcgat gaacagaaaa gaatcaaccg       300
     aaactggcag tgagagggag acaaacatgt tcgagctaca gcaactacgc gcagagctag       360
     cagaagcgaa ggcaatgctt aacggaacac gatcgagctt gcagttccaa gaacaacaac       420
     aaccagagca aagcaaggct acagttagtt ccgttatcca gacggcgcag tttacgcagg       480
     ctggcgccac aaaagagaac acaacatttc actcgccgca gcgatccaac gagagagcgg       540
     agagccagcg ttttccagtt gatgctctcg ctctcgccaa agagacgata accgattacg       600
     atgggaaaac ttgcgcgcgt gcctggataa cagtggtcaa aaatatcgca cgcactttca       660
     acatcgatga caaccattta cgcatcttac tcatcactaa acttaaagga aacgcgcaag       720
     tctggttaca tgcgcaccct gctcgattga tcgaaccaat tgacaatttg cttgatcaat       780
     tgtcattgac ttttggcgag caatcatcca aggctgagat ccggcgaaaa ttcgagagtc       840
     gcaagtggaa aaccgaggag aatttctgca gttattacga cgagaagatg gctctctcaa       900
     acgggataaa catcgacgac gacgaactac tggaccagat gatagagggc ataccgctac       960
     aaaatttccg tacccaagca cggattcaat gcttctctac tccatcggag atgctacgcg      1020
     cattttcgaa catccgtttg ccagctcgga gggagccacc tgtacagcca accgactaca      1080
     aagatgccat acgatgcgca aactgtaatt caagaggaca caaagctgac atctgcaaga      1140
     agcccaaacg tgaaccaggt tcgtgctacg cctgtggaca acttggacac ctggtggcac      1200
     aatgtcccac aaggaagagc gtttcatcta ataattatgt aagatggttt aaaattaatt      1260
     tttttgaaaa tgcttataag cccataattt cagaatgcct catagactct ggcagtccta      1320
     tatctatcat taaaaagtca cttattaacg agacaatgaa gttagcccta gttaatactt      1380
     gctattttgg tttaaacaac tgtattctca aaacacatgg acaaaccaca tgttatgttt      1440
     tgaaaggatc aataaaaata tattttcgtt taatcattgt ttgcgaccag tctatgaggt      1500
     ataatgttat tctcggcaga gattttttaa ctgcatgcaa tttaaattta gacccgtaca      1560
     ccttgggaat gattgcgttg agaaaaccca tggaaataaa caaaatatca atgtttactg      1620
     aaaatgatag tcctgagaaa tctttagaaa atgaaattgt tagtccaaaa tcgttagaga      1680
     atgaaattgt tagttcacaa tcgttagaaa atgaaattgt tagccccaaa tcgttagaga      1740
     atgaaattgt tagtccaaaa tcgtttaaaa atgcaactat tagtccgaaa tcgttagaaa      1800
     ataaaatcgt taatcaacag cataaagaaa ctggtccaat atcgttaaga gatgaaatag      1860
     ttaatcaaca aaagaatgtc agtaaatcaa aattatcaga agatgaaatt gttaacactt      1920
     caaaagaaat cgttagtttt aaattgccaa aagataaaaa cgtttacgaa caattaaatc      1980
     acaactttga taaggaagta ctaagaatat gtcatgtaac tgaaagtgag ttagaataca      2040
     aaataggaga aaatgttagc aataggttac aactagaatt cgataggttg tttagaaatt      2100
     tttatataaa tgcaaaaagg ccaaatgaac cgacagttag aagtgaaata caattgtgtt      2160
     tgaaaaaccc gaaaccgttt agctgttctc ctaggaggct ttcatacaca gaaaaagaca      2220
     ggttacaaaa actattagac gaatatttgg aaaacggatt tatacgacca agcgactcgg      2280
     aatatgcatc gcctattgtt ttagtgaaaa agaaaactgg agacttacgt atgtgcgtcg      2340
     actttagaaa acttaataaa atgacaatga aagacaacta tcctctacct cttatagatg      2400
     acttgttaga tagaatgaat gagaaaactg ttttcaccaa actcgatctt aaaaacggtt      2460
     ttttccacgt gcatgttaaa aaagaatcaa taaaatacac ctctttcgtt acaccattag      2520
     gccaatacga gtggctgcga atgccatttg gcctcaaaaa cgccccgtct gtgttccaaa      2580
     gatttgttaa caaaattttt gcggatatga ttagagaaaa caaagtagta gtatatatgg      2640
     acgacattct attggcaacc gaaaatataa acgaacactt agaaacgttg aaagaaattt      2700
     ttaaaagatt agttgaaaat aaacttgaat taagaataga caaatgtgag tttatgcaat      2760
     caagtataaa atatcttggg ttcataataa ataaagacgg cataatgccc aatgacaaag      2820
     gaatcgaggc aataaaaaat ttcccaatac ctaataatgt tcatacagta caaagttttt      2880
     tgggattatg ctcatatttt cgacggttta taaaagattt ttctagacta gctaaaccat      2940
     tgcatgacat tctaaaaaaa gataaaccgt tcaaatttgg tagtgaagaa atgatttgtt      3000
     ttaatatgtt aaaagataaa ttaatacagt caccggtctt agctatatac aaccataaac      3060
     acgaaacaga attgcattgt gatgcaagtt cttctggatt cggtgctgta cttatgcaaa      3120
     agaaggagga ccagaaatgg cacccagttt cattcttttc aaaacggaca acagatattg      3180
     aatcaaaata ccacagtttc gagttagaaa ctttagccat tgtttattcg ttacgtagat      3240
     ttagagttta tcttcattgg aggacattta aaatagtcac cgactgcaac tcattaattt      3300
     tgaccctaag caaaaaagag ctaaacccta ggatagccag gtgggcttta gaattccaag      3360
     gttatgattt tgaaattgtg catagggcag gtagccgcat gcaacatgtt gacgcactga      3420
     gtaggtgtac aaatattatg gtaatacaaa caaacagttt cgaagataat ctagttatat      3480
     gtcaagggaa agatacaaaa ttaaaagaaa tcaggcaatt gttagaaaac acagaaaata      3540
     aattgtatga gatgagaaat ggtatagttt acaaaaagac aaatgaaaat agattgctgt      3600
     tctacgttcc gatagaaatg gaagaacaag tgttatacaa atatcacaac gaacttggac      3660
     acgtaggaag agacaaaatg atagaagcta taatgaaaaa ctattggttt ccaaatttaa      3720
     aacagaagtg tagcacacat atcagcaact gtttaaaatg tatttcattc agtcccaaaa      3780
     caggaaaaac agaaggattt ctacacaaca tacctaaggg aaacaaacct tttgaaataa      3840
     tccatattga ccattatggt ccagtagact tggctagacc gaagaaacat attctagtga      3900
     tagtagatgc attcacaaag tttgtcagac tatacgcaac aaaaactacg aacacaaaag      3960
     aagtcataca atcgttaaat gactacttca gagcatacag taggcctaag tgtatcatat      4020
     cagatagagg agcatgtttc acgtctggcg attttgactc atttttgaaa gaatgcaatg      4080
     ttaaacacat aaaaattgca acaggatcgc cacaagccaa cggtcaagtt gaacgtataa      4140
     accgaagtct tggtccaatg attagcaagt taattgaacc tgatcaaggt ctacactggg      4200
     acttagtctt agaaaaggtc gaatataccc tgaacaatac actacaccgc agcattaaac      4260
     agtatcctag cataatgtta tttgggttac aacaaaaagg acaaattatg gatgagttaa      4320
     aagaaaaaat tgaggaaatt ggagaaacga ttgaagaaag agatttagaa agtattagaa      4380
     ataaaggcga ggcaagtcag aaaatagcac aagcatacaa taaagaatat gttgacaaaa      4440
     aacgaaaacg atcaggagtg ttcacaaaag gcactacgtc atggttaaaa attttgactc      4500
     aacaacaggc atagctaaga agttaattcc aaagcataaa ggaccctatg tcataagcaa      4560
     agttctcaaa aatgatcgct tccttctgga agatgttgat ggatttcaaa tttctcgcaa      4620
     tccttaccgg ggtgtatgga gcatacagaa tataaaacac tggcaaagaa aaattaagag      4680
     tctacaaaat agaaagtata atttgagaaa ctctgtacaa aatagaaagt ataatttgag      4740
     aaactctgta caaaatagaa agtataattt aagaaactct gtacgaaatc gaaagtataa      4800
     tttaagaagc aattgtaaaa caaagaaaac aaacaagaag aaaagaaaac caaaaaaatg      4860
     tttaagaccg ttcaaaagta tctccactaa gaagaataaa ataagaaaca ggacccttag      4920
     ctttaagaaa cgttaattgt tataaaatcc tacgatcggg agatctagtt gtcaggacgg      4980
     ccgagt                                                                 4986
//
ID   DM2         repbase; DNA   ; DRO   ; 4558 BP.
XX
AC   X15066;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   Drosophila retroposon microcopia Dm-2 3'end.
XX
KW   Repetitive element; Long terminal repeat; reverse transcriptase;
KW   Copia element; retroposon; DM2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4558
RA   Lankenau H.D.;
RT   "Direct Submission.";
RL   Direct submission to Repbase Update (1989)Lankenau D.H., Dept Mol
RL   Developmental Genetics, University of Nijmegen, Toernooiveld, NL 6525
RL   Ed Nijmegen, The Netherlands..
XX
RN   [2]
RP   1-4558
RA   Lankenau H.D., Huijser P., Jansen E., Miedema K., Hennig W.;
RT   "DNA sequence comparison of micropia transposable elements from
RT   Drosophila hydei and Drosophila melanogaster.";
RL   Chromosoma 99, 111-117 (1990).
XX
DR   GenBank; X15066; Positions     379    4936.
XX
SQ   Sequence 4558 BP; 1425 A; 876 C; 1010 G; 1247 T; 0 others;
     agcaacctag ttatgatgtt aagctaccca aatttaaccc tgatgctgca tgcgtagagg        60
     cagcaaagtg gtgtccaaca accgatataa ttctaactga gcaccccctt aaaggaagta       120
     aattgatcat ggcactaagt aactgcatgg agggaactgc atctcagtgg ctaacacaaa       180
     tctcgtacca gggtatgact tggcaagagt tccaggaatt atttctgcag cgctttgaaa       240
     ccgaagagac gccggccgct acgtttttaa atttactcaa cagccgcccg actgccgccg       300
     aatgttacgc ggtgtatgcg agtcggctgg tgacgacgct gactacaaag tggcggaata       360
     tggaaataga agaaattgcc gttacaaccg ttcttgcgca tatggcaaac attgacagtc       420
     gtttgcagcg cgtcctcttc acatccaatg tgcgtaccag aagtaagcta caggcggagt       480
     taaaagcgtt tacgttcgac aagaagcgac atgctcgaga tgacaacctt ggacctgacc       540
     acaagaaccg taaggcatcg ccagttgtat gccacttctg ttcaaagccg ggacatcgaa       600
     ttgctgaatg ccgaagtaaa atgcgacaag atagacaggc gaaaccgcag cgtgaaaaat       660
     caaatgttac gtgctatcgg tgcggccaac cgggacattt ctccaaccag tgcccgaaaa       720
     acggaagtgc agccaaacaa gatgtgactc aacagaagac tgttaaccaa tgttgtgtga       780
     ctgagccaaa gggaagcttg catcaacgag gtgagatcta tccaatttgt ttcgattccg       840
     gtgcagagtg ctcccttatt aaagacgaca ttagcagtaa gttatctggt aaacgtataa       900
     acaatactgt aatgataaaa ggcattggtg gtggcagtgt gtgcagtaca ttgcaaatct       960
     tgagtgaagt cactataaac gaaaatatta tggaaatatt atttcatgta gtcccgaacg      1020
     agcaaatgag gaatgatatt ctgatagggc gagaaatact taaacaagac ttttatgtaa      1080
     ttttgacatc cgataatttt aaagttgtaa aatcaaaaac tgttaataat tgttctttta      1140
     tatgttaatt gcgctgttat gttactgtta ctgcattgta ttgattcatc gcttctaaat      1200
     aaataaatat ataaaaaaaa aaaattgttc cgttactgag cgatcgttta ctttgtccga      1260
     tattgacacc gaattagtcg acaatgagaa agctcaatta attgagttac ttgaaaagca      1320
     ctcgacttca tttaccaacg ggatacctca tactcgagta aatacaggcg aaatgaaaat      1380
     ccgtttgatt gatccaacta aaactgttca gcgccgacct tacagactta gccccgaaga      1440
     gagagaagta gtgcgaatcg aggtgagcga attgataaga tgtaatattg ttcgcccaag      1500
     ttgctctccc tttgctagcc ccatgttgct cgtcaaaaag aagaacggaa ccgaccgtct      1560
     atgtgttgat tttagagagc taaactcgaa cacgatttcg gataaatacc ccttgccgct      1620
     tatcagcgat caaattgcta gacttcgcgg agcaaattat ttcacatgcc tggatatggc      1680
     aagtggtttc caccaaatcc cgattcaccc tgaatccgtg gaatatactg catttgtgcc      1740
     agacggcctc aaaaatgcgc catctgtttt ccagcgcaca gtcataaatg cacttggtga      1800
     ccttgctaac tcttttgtaa tcgtttacat ggacgacata atggtagtat cgccaaccaa      1860
     ggaattggct ttggaaaggt taaaaactgt tttgaatgtt cttacaaagg ctggttttac      1920
     ctttaacctt gctaaatgca gttttctcaa aacaacggtt cagtatttag gctatgaagt      1980
     gcgagcggga gaaattcgtc cgaatgtgcg aaagatatct tcattaagct ccttgcctcc      2040
     tcctcaaact ctctccggcg ttagacaatt cattggcttg gcctcttact ttcgcaaatt      2100
     cgtgtctgga ttctcccaac ttatgaaacc attgtattca ctttcgtctg gtagcggcaa      2160
     gattacatgg agcgctgagc tggaagagat cagacttaaa gttgtgacga tcctcacaaa      2220
     tgagcctgct ctggtaatct tcgacccgca atatcctatt gagttgcaca ctgatgcaag      2280
     tgcctgtgga tatggagcga tacttttgca ccgtatagaa agtaagcccc atgtaatcga      2340
     atacttcagc aaaacaacta cctctgttga atctagatat cactcctacg agctggaaac      2400
     cttggcagtg gtaaaagccg ttaaacattt tcgccattac ctaattggcc gtgagttcgt      2460
     tgtctataca gactgcaatt cattaaaagc ttctcgcaca aaaatagatt taacccccag      2520
     agttcaccgc tggtgggcct acttacaatc gtttaatttc gaaattcagt atagagaggg      2580
     taagcgtatg gctcatgtgg atttcctatc aagaaatcct ttatcacccg aacacaattt      2640
     gtcaataaac aagattcccg aaaaaagagt aaatctgtct gaaatttcaa gtacttggct      2700
     tcttgctgag caacggttag accttgagat aatagaaatt gttaacaaat tggagtcaga      2760
     tgaattggcc gaaaacttgg ccaaaacgta tgatttgcga aaaggtgtat tatatcgcaa      2820
     ggtccaaaga cgaggtagaa caagttattt accagttgta cccagagctt tcaaatggtc      2880
     agtaattaac caggtacacg agtcgataat gcatttaggg tggcaaaaga cacttgataa      2940
     agtgtaccag tattattggt tcgctaaaat gaacaagtat gttcgaaaat ttttttcaaa      3000
     ctgcataact tgtagatcag tgaagtcatc ttccgggaag gttcaggcgg aacttcattc      3060
     cattccgaag acaagtatac cgtggcacac catccacata gatataacgg ggaaattaag      3120
     tggcaagagc gatttgaagg aatatgtcat tgttcagatc gatgcctata caaagtttgt      3180
     ttatctgtat cacaccttaa agatagatgc cgaaagctgt gttaatgcta tgaaatcttc      3240
     catatcctta tttggagtac cagatcgcat catcgccaac cagggcagat gttttactag      3300
     ctctaagttt tcagagtttt gcgtatcgca gaaagttgaa cttcacttga ttgctacggg      3360
     aatgagccgt gcaaatgggc aagtggaacg ggtgatggaa acactgaaaa atttgttgtc      3420
     agtggtagaa tcaagtcaac gatcgtggca ggacgcactt ggcgaagtcc aacttgcact      3480
     gaattgtaca atttctcgtg ccactgaggc aagtccgtta gaaatgttaa ttggtaaaca      3540
     ggcttgaccc cttggattag ttcccccatg tgagaccgaa tgtgaaatag atatggcaac      3600
     tgttagagct catgcgacag aaaatatgaa ttcttagcgt cttacgacaa atcccgattt      3660
     gatagcagta gggcagccgt tgacaaacac cacgtaggtg actatgtgct attgaggaat      3720
     gaagaaagac accaaactaa gttagatccg aaattcagag gaccgttttt ggtaactgaa      3780
     gtattagagg gtgacaggta tacactaaag tcgttgacga gtaaccgatc gttcaagtat      3840
     tgccatgaag atatacgtaa aatgccggat gcagaaatcc cgaatgagtt aaacgagaat      3900
     gtagagcaat agctgaaata tagaaacagt tgaatgaaaa gaaaagcccg ccaatgagtt      3960
     cttttgtgaa cgagagatat ccgtctaggt gagacgatga attgtgagtt atccgtctag      4020
     gtgagacgat gaattgtgag ttatccgtct aggtgagacg atgaattgtg agttatccgt      4080
     caggtgagac gatgaattgt gagttatccg tccaggagag acgatgagtt tggattgaat      4140
     taataatcaa gtgtgtgtga actggcggaa gatcgatata tagaaatcga taaatgataa      4200
     tgttaagata agttgtgagc tgatgtatta ctgatcaatg gaactgaata tgaaaataga      4260
     ataagttatc ccagcaacag tgaaataaga gctgttttgt ttcttcacag aattaagatt      4320
     taagaaatac acctaataaa gtcaaactaa tgaaattaaa tgttattgaa tagtgatgaa      4380
     agtaggtgat cttgatatct tggtatctcg gtatcaaaag cttacacgag gacgtgaaat      4440
     gtcagaatgg ccgtgtcgtg gcgaaaataa tgagtatgcg tgtagtcgct gtttacttct      4500
     tctccatgtt ccctttgcta ttatgcgtgt tcctatttat gaacacgtgg caaaaata        4558
//
ID   DMLTR4      repbase; DNA   ; DRO   ; 478 BP.
XX
AC   J01110;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.melanogaster mobile dispersed genetic element mdg1, 5' LTR.
XX
KW   Repetitive element; transposon; terminal repeat; DMLTR4.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-478
RA   Kulguskin V.V., Ilyin V.Y., Georgiev P.G.;
RT   "Mobile dispersed genetic element MDG1 of Drosophila melanogaster:
RT   nucleotide sequence of long terminal elements.";
RL   Nucleic Acids Res 9, 3451-3464 (1981).
XX
DR   GenBank; J01110; Positions      31     508.
XX
SQ   Sequence 478 BP; 142 A; 71 C; 80 G; 185 T; 0 others;
     tgtagttaat ttgaattcta atacttctga tgtagttaat aaagtctcaa aacgcagttg        60
     gtcattttat ctttatttgg tttttattaa gcgagtgtac attcctgatc tattcctgat       120
     ttataactga tcttagtgtg gtctacaggg agatctcttg tgacagccaa gtgctgacac       180
     tagcaaattc tgcaatatgt atgtatgaag ttcatactcg ataaccaatg ggagtcgagt       240
     ccgaccccta aaggcgtaca tcctgaattc gcatatttag tattagggtg tatctaaaga       300
     tctactaggg tgaccctaag gaattagggt ggtcctaagt ttacttatta gttgacttat       360
     tattatgatt catattataa ttattattaa tattattatt attattgtta ttattattgt       420
     tattatattc gtatatacta catctccctc cttttgaaaa ataacgtaat aacatgaa         478
//
ID   LTRBLD_DM   repbase; DNA   ; DRO   ; 399 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 3)
XX
DE   LTR from BLOOD LTR-retrotransposon - a consensus sequence.
XX
KW   Long terminal repeat; DMBLDLTR; LTRBLD_DM;
KW   BlOOD LTR-retrotransposon LTR; BLOODI.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-399
RA   Bingham M.P., Chapman H.C.;
RT   "Evidence that white-blood is a novel type of temperature-sensitive
RT   mutation resulting from temperature-dependent effects of a transposon
RT   insertion on formation of white transcripts.";
RL   EMBO J 5, 3343-3351 (1986).
XX
RN   [2]
RP   1-399
RA   Wilanowski M.T., Gibson B.J., Symonds E.J.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 92, 12065-12069 (1995).
XX
RN   [3]
RP   1-399
RA   Kapitonov V.V., Jurka J.;
RT   "LTRBLD_DM.";
RL   Direct submission to Repbase Update (1998).
XX
CC   [3] (Consensus)
XX
CC   LTRBLD_DM is LTR of active BLOOD LTR-retroelement.
CC   Originally reported orientation has been changed based on the
CC   internal sequence BLOODI [2,3]. There are several identical copies
CC   of the LTRs in the drosophila genome.
XX
SQ   Sequence 399 BP; 113 A; 89 C; 87 G; 110 T; 0 others;
     tgtagtatgt gcatatatcg agggtacact gtacctataa gtacacagca acacttagtt        60
     gcattgcata aataaatgtc tcaagtgagc gtgatataag atcacccatt tatgctttaa       120
     gctaagtcag catccccacg ctggccgctg gccatatatg cgcataagct ctctctctct       180
     ctctcttata catatatata tacgctgctc ttctgccgct gtcgacggcg gcgcagtcgc       240
     agtatttagg taagattaga cactctgtag aggttaagcg ggcagaaccg tttctgctac       300
     tcgaagagat aagaagaaat aaaaaggtgg cctgacggct gcacccaact gcaaggaaaa       360
     cacgtgttct caattggtgg catatattgg tttattaca                              399
//
ID   PROTOP      repbase; DNA   ; DRO   ; 3409 BP.
XX
AC   AC005453;
XX
DT   14-JUL-1999 (Rel. 3.4, Created)
DT   14-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Autonomous DNA transposon; a molecular fossil.
XX
KW   TIR; transposase; P-like DNA transposon; insertion element 1360;
KW   HOPPEL; PROTOP_A; PROTOP.; PROTOP.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3409
RA   Kapitonov V.V., Jurka J.;
RT   "PROTOP.";
RL   Direct submission to Repbase Update (1999).
XX
DR   GenBank; AC005453; Positions     634    4052.
XX
CC   This mobile element encodes transposase distantly related
CC   to the P-element (position 970-2718).
CC   PROTOP has perfect 31 bp-long TIRs and it generates
CC   7 bp-long duplications of target sites upon its integration
CC   in the genome.
CC   Nonautonomous form of PROTOP is deposited in Repbase Update
CC   as PROTOP_A.
XX
SQ   Sequence 3409 BP; 1264 A; 533 C; 575 G; 1037 T; 0 others;
     caaagacact agaataacaa gatgcgtaac gccatacgat tttttggcac acgatttttt        60
     tgccgtggct ctagaggtgg ctccaggctc tctcgaattt ttgttagaga gcgagagagc       120
     gaagagcgct acagcgaaca gctcttttct acgcatacag tgatagcaga caactttatg       180
     tgtgcacacg tatgctcatg cattgtaaat ttgacaaaat atgcccttca ccgtagaagt       240
     tcttagactt taaatctata ttatttttga tcaattggca tcatgcgaaa aattcttgtt       300
     tgcattgcct taacgttatt attatttgaa aacagattag aaatagccaa atccatgtac       360
     atatcataac aaaataaatt tcaaaaatta ctttatatta gaatatttgt cattagagta       420
     ttcagcttgc ggcgtgtgaa aaattaataa ggcaatgatt gttgagtgct tgtgtccgca       480
     cttcgtgcct caagatatga ccaaaacaaa gacactagaa taattctagt gtctttgatg       540
     tgacttttgc aataaacagt tttcatattc atatttattt tactaaagac aaattagaga       600
     gccaatttag aattaaaatg ctgaggaaag aaaactcaaa cctaaaaaaa aataagttag       660
     gttggaatct aagaccgaaa aaaacatata ttctgaaata gataaaatta atttaacagg       720
     aaatgaaaaa atattaacga aaatgctttt taaggaaaaa agggcacaaa tacaagatgg       780
     aatgattgcg aaaaattgtt tgctcagagc atatattaca ggtccacttt gacatatacg       840
     ttcttaagag actcgctgaa attaaatttt ccaagtccat catctttgca aaagtggaac       900
     agcataaaaa agttacagcc aggagacaac gaatgtttgt actcagccct taaagaatct       960
     ataaaagaaa tgaatgcatc tgataaagag tgcatattgg cttgtgatga agtagcgata      1020
     aaaaaaaacc taacttacaa tgtgtcagtt gatataatag atggaataga gcatttactt      1080
     gatcgctcta ataaaatggg aagccatatt tgcgtatttg ttgttcgggg tatttaaaaa      1140
     aaatggaaat ttatattaaa ctattttgtg gccgaaacga atataaaagg cgattgcgta      1200
     aaaagtctta tttataaaaa tattattatt gctgaaacaa ttgggttcaa agtaaggggt      1260
     gttgtgtacg atcaaggagg taacaataga aaatgtacct cactacttga agtcaccaat      1320
     gagaaatctt actttacctt aaataataaa aaatattata tgttttatga cattccgcat      1380
     cttttcaagt ctgtaaggaa taattttcta agagctaatt ttgaaacccc tgacggacta      1440
     gttgactttg atgtcattcg agaggtttac gaattagatc atggatcagt aacgagaatg      1500
     actaaattaa caaggagtca cgttaatcca accagatttg atctaatgcg cgtatgtttg      1560
     gcaactcaaa cacttagcca cactgttgca gcggcaatta agacttgtaa ccaaaacaag      1620
     caattacatc gaaatagttc cgaagttgca gcttctacgg ctgcatttgt ccaaaaagtt      1680
     aatgattact ttgattgcct gaatagcaga gtattaactg acaaaaaccc catgaaattc      1740
     gcgctccaag ttaacaatgg agtttggaac aaactaaagg aaatgcagga atacctaaag      1800
     agcgttaaat atcacgggaa taaaatatat tgtgttgatg gcttgatcca aactactgaa      1860
     gctatatttg gactcctcga agatctcttt aaggatcaca cagaccactt tttcttttta      1920
     actagtagat taaaccagga tgcccttgaa aatatatttg cgtgcgttcg agcaaaaggt      1980
     gataactgca gaaatccttc agttaacgaa tttaatataa taattgccaa gctcatatct      2040
     ctacacattt ttaaattttc acaaaagtcg aattgcgaat cagatgatga tgttatgttg      2100
     ccaatagagt tcgattcgat aatatatcag cctttcgttg aaaaaaagaa atacagcaac      2160
     aagaatactc tgtatcattt tccaaaatcg tgcaagacaa tgagaggtac tttgaccaaa      2220
     atatagataa ctttgtgcaa tgatgtaccc attgaattaa cttccagtag atattttgtt      2280
     ggatatattg ctaaggaatc cagttgcgat aaatgcagat cggtaatttt aaaagaaacc      2340
     gagcatttaa cagctccatc agagcttttt atacatgaaa aaaactactc aatagaatcg      2400
     gacttcggga aattaaaggc accatctgat ttatttttta atatttgcaa aatacacatt      2460
     aaagctttcg aaaatatttt taaaaataat aaaaaacaaa tgtgtataaa aaaatgtatt      2520
     attgagcaat gcattaagtg cacaaatgaa agtagtgcct tctcattatg gttttatgaa      2580
     aataatgaat gttatgcaca tagaacagat cttttaaaca aacttataaa agttttgctt      2640
     tttaagcatt gtaagtggac tgtgatagct gatagacaaa aaaagcaagc taagctcagc      2700
     attctatctc ataaataaaa aaaatgagcg ttatttaaat aactgacgac tgaaaaatcg      2760
     agcaatatat aataaaaaac aatagttaga aaaataactt aattggggaa tatggaaatg      2820
     ttaatgttaa acattaaaat atttcaagtc gacttgaagg tcatatacgt aaatataaga      2880
     caccattaca attgtaatgg cctccccgtg gtgttccctg ggtaccgatt attacacata      2940
     ttacacataa ataattatga acataaatat aaatatgtaa acggtagcta attcgagcgg      3000
     cgattttaac aaacgaattt aaaaagcttt aaaattaaaa aattttaaaa tttaaattaa      3060
     aattttaaaa ttataataac aagggcgcga attttttaaa attattttat tttatcatat      3120
     tgctacgaaa ttggcaaaaa aactacccta atatgtacaa tgtaaattca tttcttagat      3180
     cagaattgat ttcggcccga aaatcgtctt ctagcacaac acgcacactt atacgcgttc      3240
     tcgtctcttg tttttactca cacaagcaag caaattctat ttttagattt cttacgttct      3300
     cagcgtgagc gagcggaaag acagcaattt tggccgtcac caaaaaagtg gctgcatagt      3360
     gccaaaccaa tgtatggccg ttacgcatct tgttattcta gtgtctttg                  3409
//
ID   GYPSY_DM    repbase; DNA   ; DRO   ; 2790 BP.
XX
AC   X03734;
XX
DT   22-1995 (Rel. 2, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. melanogaster retrotransposon gypsy gene fragment for reverse
DE   transcriptase-like enzyme.
XX
KW   retrotransposon; reverse transcriptase; Copia-like element; GYPSY_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2790
RA   Yuki S., Ishimaru S., Inouye S., Saigo K.;
RT   "Identification of genes for reverse transcriptase-like enzymes in two
RT   Drosophila retrotransposons, 412 and gypsy; a rapid detection method
RT   of reverse transcriptase genes using YXDD box probes.";
RL   Nucleic Acids Res 14(7), 3017-3030 (1986).
XX
DR   GenBank; X03734; Positions       1    2790.
XX
CC   CDS <1..>2790
CC   /note="reverse transcriptase-like enzyme (930 aa);
CC   /codon_start=1.
XX
SQ   Sequence 2790 BP; 859 A; 692 C; 597 G; 642 T; 0 others;
     gggagaacct taaagatgct aatcgatacg gcgcgggcaa aaaactacat taggcccgta        60
     aaggagctga aaaatgtaat gccggtcgcc agccctttct cggtgagctc aatacaccgc       120
     tccaccgaaa tcaaacacaa atgcttgatg aaagtcttca agcacatctc cccatttttt       180
     cttttggatt ctctcaatgc gttcgacgct atcataggct tggacctgtt aacacaggcc       240
     ggggtaaaac tcaaccttgc agaggactcc ttagaatacc agggcatcgc tgaaaagctt       300
     cattatttca gctgccccag tgtaaatttc actgatgtaa acgatattgt tgtacctgac       360
     tccgttaaaa aggagttcaa ggacacaata ataaggagga agaaagcttt ctccacaaca       420
     aatgaagctc ttccttttaa caccgctgtc actgccacaa ttcggacagt tgacaatgaa       480
     ccggtgtact caagagcgta cccaactctt atgggtgtct ccgactttgt gaacaacgag       540
     gtcaaacaac tgctgaaaga cggcattatc aggccctcaa ggtctcccta taacagcccg       600
     acctgggttg ttgacaaaaa ggggaccgac gcttcgggaa acccaaacaa gaggttggtc       660
     attgacttta ggaagctaaa tgagaaaact attcctgacc ggtacccgat gcctagcatt       720
     cccatgattc tagcgaatct gggcaaggca aagttcttca ctacccttga tcttaagtca       780
     gggtatcatc aaatttacct cgcggaacac gaccgcgaga agacatcgtt ctcggtgaat       840
     ggtggtaaat acgagttttg ccgtctaccg ttcggcttga gaaatgcaag cagcattttt       900
     caaagagccc tagacgatgt gcttagagag caaatcggga agatatgtta cgtctatgta       960
     gatgacgtca taattttctc tgaaaacgag tccgaccatg tccgccacat cgatacagta      1020
     ctaaaatgcc tgatcgatgc caacatgaga gtaagccagg agaaaactag attctttaaa      1080
     gagagtgtag aatacctcgg ctttattgtc agtaaggacg gaactaaatc cgatccagag      1140
     aaggtgaagg ccattcagga gtaccctgaa ccagactgcg tttacaaggt taggtccttc      1200
     cttggtttag ccagctacta cagagtcttc atcaaagact ttgctgccat agcccgcccg      1260
     atcaccgata tcctaaaagg ggaaaatggt tcggtgagca aacacatgtc taaaaaaatt      1320
     cctgttgagt ttaatgaaac tcaacgcaac gcgttccaaa gactgcgaaa catactagca      1380
     tccgaggatg tcatactcaa ataccccgtc tttaaaaagc cttttgacct tactacagat      1440
     gcttcggcaa gtggtatcgg tgcagtccta tcccaggagg gcaggccaat caccatgata      1500
     tcgcgtaccc ttaaacagcc cgagcagaac tacgccacaa acgaaaggga attgctggcg      1560
     attgtatggg ccctaggtaa gttgcagaac ttcctgtatg gctctaggga gattaatata      1620
     tttaccgacc atcaacccct cactttcgct gttgccgaca ggaacacgaa tgccaagata      1680
     aagaggtgga aatcttacat agaccagcat aatgccaagg ttttctacaa acctggcaaa      1740
     gaaaatttcg tggcagacgc cctctctagg cagaatctga atgccttaca aaacgaaccc      1800
     caatcagacg ctgcgaccat tcacagtgag ctctccctga cctacacggt cgagacaaca      1860
     gacaaaccgt taaattgctt caggaaccag atcattctgg aggcagcacg ttttccgctc      1920
     aaacggaacc tggtgctctt tcgaagcaaa tctcgccact tgatcagctt tactgataaa      1980
     agttggctat taaaaacact taaggaggtg gtaaaccctg acgtcgtgaa cgctattcac      2040
     tgcgacctgc ccactctggc aagcttccaa cacgacctca ttgcccactt tccagccacc      2100
     caatttcgtc actgtaagaa tgtcgtgtta gacataaccg acaaaaacga acagatcgaa      2160
     atcgtcactg ctgagcacaa ccgcgctcac agagccgcac aagaaaacat taaacaagtc      2220
     cttcgggatt attactttcc caaaatgggc agtttagcta aagaagtagt agctaattgt      2280
     agggtctgca cccaagcaaa gtatgacagg cacccgaaaa agcaagagct cggggaaacg      2340
     cccataccca gctatacagg tgagatggtg catattgaca tattctcaac cgacaggaag      2400
     ctattcctga cgtgtattga caaattttct aaatatgcaa tagtgcaacc agtggtgtct      2460
     agaacaatag tggacatcac agcacccctg ttgcagatca ttaacctgtt ccccaatatc      2520
     aaaacggtct attgtgacaa tgagcccgca tttaactcag aaactgtcac ctcaatgctc      2580
     aagaacacct tcggcattga catagtaaat gcgcccccac tccacagctc gtccaatggc      2640
     caagttgaac ggttccacag cacattggca gaaatcgcca ggtgcctgaa gttggacaaa      2700
     aaaacgagtg acacagtaga actaatcttg agggcgacga tagaatataa caaaaccgtg      2760
     cactcagtta ctcgtgagaa ccaattgagg                                       2790
//
ID   ARS312_DM   repbase; DNA   ; DRO   ; 265 BP.
XX
AC   J01068;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. melanogaster autonomous replication sequence (ars) 312.
XX
KW   Repetitive sequence; Origin of replication; ARS312; ARS312_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-265
RA   Selick H., Kauffman S.;
RT   "ARS312_DM.";
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania.
XX
DR   GenBank; J01068; Positions       1     265.
XX
SQ   Sequence 265 BP; 77 A; 54 C; 29 G; 105 T; 0 others;
     ccacttcccg tccaaaacta ctacgcccaa gcctataaaa aatgttttga tatattttca        60
     tatttattaa tattattgtt attattatta tttattagtc ttgtaaattt ctatcgattt       120
     gccaaaaagc tttttgttac gatcactcta acgcactcta acactcaaaa gtgccgcacc       180
     cacacttttg ataaattttt taatatattt aaatattttg ttgcgaactg ctttctttcc       240
     ttagtgacag tgcctctagc tcagg                                             265
//
ID   TRANSIB2    repbase; DNA   ; DRO   ; 2820 BP.
XX
AC   .
XX
DT   14-AUG-2000 (Rel. 4.3, Created)
DT   14-AUG-2000 (Rel. 4.3, Last updated, Version 1)
XX
DE   TRANSIB2 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; TRANSIB family; TRANSIB2p transposase; TRANSIB2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2820
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB2.";
RL   Direct submission to Repbase Update (2000).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB2 belongs to the TRANSIB family of DNA transposons.
CC   It has generated 5-bp duplications of the CANTG target
CC   sites upon its integration into the genome. TRANSIB2 has 43-bp
CC   terminal inverted repeats and it encodes putative transposase
CC   which is not similar to any known transposases.
CC   There are ~30 copies of TRANSIB2 which are ~95% identical to the
CC   consensus sequence. Several sequences are 98% identical to each
CC   other and form a minor subfamily that was active most recently in
CC   the D.melanogaster genome.
CC   TRANSIB2 encodes protein TRANSIB2p involved in transposition:
CC   FYIGKFEFRHSDLLYIWRRNNRQVSYVSDYISSAINNNNLESKKTEEIDKKIVNFELFIKRKLP
CC   ECNRQLDRFISKHTKWMASKITILVSDFENSKTPQQMGRRNLSYQNAGERLKRKLASNLASESD
CC   HDTSLLIHAATVSARKECKRDVAFVLKETLKTPEFPSESRMQIQWQKPTPLSPDEALAYLLENT
CC   LTKQQYISTRLLNKSHNSDIYPPYNEVIEAKLQCRPEGIEVMENTAQVLLQNLLDHTAQRLIKL
CC   QSDVFKQFPDIFKIKLICSYGFDGTTGHSAYKQKFETEALGTPISDQSLFVTSVIPIQIIDSFN
CC   RHIWINRAPQSIRFSRPLKIELIKETAVHIMMEKNQLDNQINNLTPFTYKCDETRDIEVTYEMH
CC   MTLIDGKVLNVLTDTKSTQCCPICGVSPTQMLKITNFSSETFAPKVKALQFGVSPLHAWIRFFE
CC   FVLNVSYRDKRIKPR
CC   This protein is 43% identical with TRANSIB3p (42% identity with
CC   TRANSIB1p, the last protein is not complete).
CC   There is only partial ~60% nucleotide identity between TRANSIB2
CC   and TRANSIB1 or TRANSIB3.
XX
SQ   Sequence 2820 BP; 1016 A; 485 C; 491 G; 826 T; 2 others;
     cantgcacta tggtccagaa ttcgtttttt tttggcataa agtctaaatt tttatgtcaa        60
     tatatcgtcc tttagcaatt attttctaat agaaaattga tcatataaat aaaaaccaaa       120
     aacaaaattg accgaaagct tcactaaatc gttttatgag cttttaaagg tgaagtgtta       180
     aacagctgat tgagagaatg caattcccgc caaattattt gcttactttt gcacgtggta       240
     cgatcgttaa tacgcatcca taaattatag taaaatatgg aaaataaatg ccaaggtatg       300
     ttgtttttaa cgtatgtagt taatatatgt gtagttgtac tgtttttgtg ttgtgtaaca       360
     tccaatttat gtgtatttta acagaaaatt ctaacgtgtc ccctgtgttt cgtggagtat       420
     aactaatttt ctgacaattt ctcacaaatg ttaaaaacgt ccgtttttat ctttaactat       480
     tgtctttgac ggtaaagtaa tatcttttgc ccatttttgc tcgttttcct aaaatttgat       540
     tttatatagg caagttcgag ttcagacata gcgacctcct gtacatttgg aggcgtaaca       600
     atcggcaagt aagttatgtt tcagattaca tttcttctgc aatcaacaac aataatctgg       660
     aatcgaaaaa gacagaagag attgacaaaa aaatagtaaa ttttgaatta ttcattaaaa       720
     gaaaactgcc cgagtgtaac agacaactag accgatttat ttccaaacat actaagtgga       780
     tggcgtctaa gataacaatt cttgttagtg attttgaaaa ctccaagaca ccacagcaaa       840
     tgggacgccg aaacttatct taccaaaatg caggagaaag attaaaaagg aaactggcat       900
     ccaatctggc aagtgaaagt gatcacgaca caagtctttt gattcatgca gcaactgttt       960
     ctgctagaaa agaatgcaag agggacgttg cctttgttct taaagaaact ttaaaaacac      1020
     cagaatttcc aagcgaatcg aggatgcaaa ttcaatggca aaaaccaact cctctttcac      1080
     cagatgaagc tctagcttat ctcctggaaa acacgctgac aaaacagcaa tatataagca      1140
     ccaggctttt aaataaaagc cataacagcg acatatatcc gccctataat gaagtgatcg      1200
     aagcaaaatt acagtgccga ccagagggta tagaagtaat ggaaaacact gctcaagtgc      1260
     tattacaaaa tctcttggat catacagcgc aaagattaat taagttgcaa tctgatgttt      1320
     tcaagcaatt tccagatata tttaaaatca aattaatttg cagctacgga tttgatggga      1380
     caactggtca tagtgcttac aagcagaaat ttgaaactga agcacttggc acaccaattt      1440
     ctgatcaatc tttatttgta acttctgtca tacccataca aattatagat tcgtttaatc      1500
     ggcatatctg gataaacaga gcaccgcagt ccattcgatt ttccaggcct ctaaaaattg      1560
     agttgataaa ggaaactgct gtccacataa tgatggaaaa aaatcagtta gataatcaaa      1620
     ttaataatct tacgccattc acttataaat gtgatgaaac tcgtgacata gaagttacct      1680
     atgaaatgca catgacactt atagatggaa aagtcctaaa cgtattaaca gacactaaat      1740
     ctactcaatg ttgtccgatc tgtggagtca gcccaacaca aatgttgaaa attacaaatt      1800
     ttagttcaga aacctttgca ccaaaagtaa aagctttaca attcggggta agtccattac      1860
     atgcttggat ccggtttttt gaatttgttt taaacgtatc ataccgagat aaacgtatca      1920
     agccgagata aaaaagtggc atactaaagg agaggacaag gttaaaataa gtattcgaaa      1980
     aaaatatatc caggaggaaa tgtggagaga aatgggcctt cgagtaagca tgccgaagca      2040
     gaatggcagc ggcaatagca atgatggtaa tacggcaaga agagatttcg caagtaccaa      2100
     attctcgtcg ataaccagct tcaacgaaaa tcttttggaa aagtttcaca ttattttaat      2160
     agcaatatcg tccaactatt ttataaattc cgacaaattt cgttcttttt gcgatataac      2220
     ttttcaatta tatatccgaa catatcaatg gtatccctat gtcatcaagc ccggaataaa      2280
     ctttacaaaa gggaccgact atcacatgca aggaaaaata gtcggatcaa tacgatgagt      2340
     gatattttcc acagagcgat tgattcctcg gacccactat tatcaacaat ttgtttaaaa      2400
     gaaagagaga gaaaaaatag gaaaaaacca cttccgaagg cagtaataag tcttttggaa      2460
     atacagtcta attttaaacc tgatccatca gacaaaatat tggattcaca ttctgattct      2520
     gattcgagtt cagattcgga aatttataat gttgaactag aagaagaaga gggcgattat      2580
     ttttaaaaca acaatataca cacttttatt taaaaaaaaa aaaaaacaat gaaatttcgt      2640
     tgactcctga gtcataccag tagttaatat gggaggcaag agagggcgtg gtcgcacaga      2700
     cttcaaattt tgtgtgcaaa ctatttgtgg tttaacaaca aaatgtacaa agtttcaagt      2760
     ctgtagctca atttttagac tttatgccaa aaaaatcgaa ttctggacca cagtgcantg      2820
//
ID   TRANSIB4    repbase; DNA   ; DRO   ; 2651 BP.
XX
AC   .
XX
DT   24-APR-2001 (Rel. 4.4, Created)
DT   24-APR-2001 (Rel. 4.4, Last updated, Version 1)
XX
DE   TRANSIB4 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; TRANSIB family; DDE-class; TRANSIB4p transposase;
KW   TRANSIB4.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2651
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB4.";
RL   Direct submission to Repbase Update (2001).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB4 belongs to the TRANSIB family of DNA transposons.
CC   It has generated 5-bp duplications of the CantG target
CC   sites upon its integration into the genome (it has happened
CC   a few million years ago).
CC   TRANSIB4 has 40-bp terminal inverted repeats.
CC   There are ~10 copies of TRANSIB4 which are ~93% identical to the
CC   consensus sequence.
CC   TRANSIB4 encodes the TRANSIB4p transposase (positions 545-2147).
CC   The transposase is not perfectly recovered since it contains a
CC   few false stop-codons and frame-shifts.
CC   TRANSIB4p is 37-44% identical with TRANSIB1p-TRANSIB3p.
CC   There is 60-62% nucleotide identity between TRANSIB4 and
CC   TRANSIB1-TRANSIB3.
XX
SQ   Sequence 2651 BP; 932 A; 454 C; 451 G; 814 T; 0 others;
     cactatgggt aaaaagccgg aaattttggt attaatgtaa ttttttttgt gattgatatt        60
     ttaatgctgc tttcattttt tgattcctaa gtaacaagat agcataaaaa taattttaaa       120
     acatttttac gagttatcgt ttatttttgg cgcgctttca aagtcagctg attcagaggt       180
     gctttgaatt gtgaaaattg gcggaaaaag ttgaacaaat tgcagcgcaa acattgtctt       240
     catagcaaac tttgagttta tttttaatta tggaaaaaac aagtcagagt atgtaaatta       300
     ttcgtgaata cacgttttcc gataattgtg tgtggttgtt gttgaattgt ccaatgtatt       360
     gcttgtgagt attttcaatt gtttactaac aaacgttcta gtgttctgtg gaatattact       420
     tttgtatggc acaacgaatc accaaagtta aagttgtatg tttttaacaa atatatgtgg       480
     aatcaaatgg tattaatgtt ttttgcccct ttttgccctt ttttgcgaaa cattttatgt       540
     tgtaggtgtg tataagttta gtcatgcagt tctgctggat gtttggagca acaacaaacg       600
     cgatgcagac gctgttaaca gttatatttt ggaaaatata gaagagaact ttgagactaa       660
     agagcaaaag attacaattt caaagaaagt gaaccaattt attacttatg taaacaagca       720
     cttaaggaaa tgcaatcgaa tgttggaccg attcaaacga aatcatttat tgtggcttgc       780
     gtctaaaatt gttgtcgtta ttgataagcc agaaatgaca ctatgcaaac ctagccgaaa       840
     acagttaaca tatgaagatg cagggcctca acctaaaaaa aaaattagca aattagctgg       900
     ctgcagaaca agggcattca acaccacttc tcgtacatgc tgcttcaatt tccgcaaaaa       960
     aaacgaagca ggcagaaacg gcctttgtat taaaaaaaaa aggataagca gtgaaaacat      1020
     acatgatata aaaaagaaaa ttgagacaaa tcatcctatt aaaataagtg ctgataatgc      1080
     tttagctctc ttaattgaaa atggatttac aaagcagcaa tataataata taaaagcgct      1140
     caataagcag caaggatgcg atattttccc tccttattca aaagtagcag aagcaaaatt      1200
     gaaatgcagg ccttccgaac ataaaatttc tgaaaaaagg ccaggagtat cgtagcaaga      1260
     tttgctagat catacagctg gccacatatg tggaatcaaa tggtaagttt ttaatgtttg      1320
     ctcagaccca acgaattgta cattaattgt gagctatggc ttcgatggat ctacggacca      1380
     aagcacgtac aaacaacgct ttctatcaaa cgaatgtatc gccctagatc aattcctttt      1440
     cgtcactcca attataccgc tgaaactaat agatgaaatc aacaatcgag ttatttggat      1500
     acattcatct ccacaatcgg tgagatttgt cggcctttga aaattgagtt tataaaggaa      1560
     cgtgctgccc ttacattgaa gaaaaaacaa atttggatgc ggctataaaa aaccttagac      1620
     catattccta cacttccaaa aaccaaataa tagcatatac tgcagaccag cgttcgttct      1680
     cgaacagcaa gatattttcg tccgttttga atttggacta caaaatcatt tacaattttt      1740
     atataatttt gatttcaatt tcttgtgagc acatgattga tgcgaaaaat ttaaatctct      1800
     ataccattct acttttaatt tatacgttaa atacgaacct tatatgagat acatacatgg      1860
     taaaatagag tagtcaccaa ccaatattgg tacatggata taaaattgta agccaattta      1920
     ttgttcctgt tagtgtcctt ggagaaaacg cgtcagaagc gcgcaacaaa ctttacaaga      1980
     gcgatagaaa atctcacgcc aggaaatgta gccgactagc aaacattaca gatgttttca      2040
     gagcagtgga ttcatctgat ccattgcttt caagtctttg tctaagagat cgaagtaagt      2100
     ttggaaaaaa gaaactcctc ccaaaagaag taatcgatat tcttcaaaat ccggatgcag      2160
     aactttataa atcaagttat cattctaata ataaagaaaa agaagtggaa gtggaagacg      2220
     aattcaattg cctttataat aagaggaggc agttgaagaa tgacaatcaa cttaataaaa      2280
     tataaaaaaa tttattgact tttatctcat aataatggtt tttgcatctt gtgtcctcac      2340
     ttcgctccca cgccaatccc ccagggaaga cacctccgga tccaccggtt gaaccacaga      2400
     catattaaca cccacacctc cttcgccacc catccatctc cctttaaaac cgctttcatt      2460
     tgtatataaa tacatttttc actttatttt caaggattgt ttttgtgggc ggagatgaag      2520
     gcgtggtcag atcaaaaaat aaacaaaatc caaaattcta tttaaatcct aattataaat      2580
     ataaaaaaaa tcaagtcgct atctttaaaa ttgtaattaa taccaaaatt tccggctttt      2640
     tacccatagt g                                                           2651
//
ID   DMHMR1      repbase; DNA   ; DRO   ; 782 BP.
XX
AC   X52809;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. melanogaster DNA non-mobile heterochromatic moderate repeats (HMR
DE   family).
XX
KW   Repetitive sequence; Heterochromatic moderate repeat;
KW   HMR repeat family; DMHMR1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-782
RA   Shevelyov Y.Y., Balakireva D.M., Gvozdev A.V.;
RT   "Heterochromatic regions in different Drosophila melanogaster stocks
RT   contain similar arrangements of moderate repeats with inserted
RT   copia-like elements (MDG1).";
RL   Chromosoma 98, 117-122 (1989).
XX
DR   GenBank; X52809; Positions       1     782.
XX
SQ   Sequence 782 BP; 190 A; 185 C; 190 G; 217 T; 0 others;
     tttttatttg aatttgggcg atttgagttg catcaaggcc ttcaggtgca accgaaagcc        60
     taggtactgg aagtgcaagc gctttgttta gaaaacaacc aggactatat tcggagaatt       120
     acttaccgtg ggtcgtccag gggcgatctc aagttcggca gcagcgagaa gaagatgtcc       180
     gggaagctgg gcccgaacat cgctccgtcc agctgtgtat cagacttcgg atgaaagttc       240
     tttttacacc gtgggcagta gatcttgacg gttgacttcg cccatacatc gctgaggccc       300
     actggcaggg tgttctgcta tcacaggaga tattgggaca cgattcaaaa tctccttgca       360
     tattatttcg gtgcatagca atcacgccac gctctgactt gatgtatcgg gcgtgaatca       420
     tgccgtacca ctttttttca tcgccgtaca acaagccaga ggaactgtcg atcaccggct       480
     tcaggatcac gtccagtatc tcgctgaaat actccaagcc catctggttg aacgtatcct       540
     gcacgtagtc ggtgggcacg cgggagaggg actcgttgcc cttgatcccg aggaaccaat       600
     cgatccagct gctgttgttg ttctggctac aagattttac tgtgacttgc tataatttct       660
     ataggaaaaa cctagttact tacgagctca acatgttgcc agtttacttg ttcacagaaa       720
     tatgacttgt agacttcaaa gtcatcgtct tcttctttga cttttgacac gtgctaaaag       780
     gc                                                                      782
//
ID   ROO         repbase; DNA   ; DRO   ; 463 BP.
XX
AC   X01918;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   Drosophila roo transposable element from 68C glue gene cluster.
XX
KW   Repetitive sequence; transposon; ROO.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-463
RA   Garfinkel D.M., Pruitt E.R., Meyerowitz M.E.;
RT   "DNA sequences, gene regulation and modular protein evolution in the
RT   Drosophila 68C glue gene cluster.";
RL   J. Mol. Biol 168, 765-789 (1983).
XX
DR   GenBank; X01918; Positions       1     463.
XX
SQ   Sequence 463 BP; 139 A; 92 C; 95 G; 136 T; 1 others;
     ctgcagagtc gattaaaggc tcagattaga ccaaatgtaa aatcccagat aagaagactt        60
     tactcgttgn ctttttgtaa gaaactgatt ttatttggaa atatcttcgg tttaaatagg       120
     tgacatgaga atcgcatctt aaagtaaatg gcctacgcag aggcctaagt aaatagtccc       180
     cgccttatcg aggtcccacg ctcgggcaca tctgcctatc ttgagcggcg aggaccttat       240
     ctgtggtctc ccactaaggg actattttag gaggcgggga acgatctcaa gtgactgact       300
     catgtagtgt gcacttaaat tacatgtttt tgagcaatgc acccatgtcg ccttagataa       360
     caaaatccta aatataattt atcgctctcg attcatttac ataagatatg aacggagccc       420
     aaaattgtaa gtctttaaat atattcgtgt tcatgtgtga aca                         463
//
ID   TART_B2     repbase; DNA   ; DRO   ; 4056 BP.
XX
AC   U14102;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Drosophila melanogaster TART-B2.
XX
KW   reverse transcriptase; TARTB2; TART_B2.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4056
RA   Sheen M.F., Levis W.R.;
RT   "Transposition of the LINE-like retrotransposon TART to Drosophila
RT   chromosome termini.";
RL   Proc. Natl. Acad. Sci. U.S.A 91(26), 12510-12514 (1994).
XX
RN   [2]
RP   1-4056
RA   Levis W.R.;
RT   "Direct Submission.";
RL   Direct submission to Repbase Update (1994)Robert W. Levis, Fred
RL   Hutchinson Cancer Research Center, Division of Basic Sciences, 1124
RL   Columbia St., Seattle, WA 98104, USA.
XX
DR   GenBank; U14102; Positions       1    4056.
XX
SQ   Sequence 4056 BP; 1322 A; 966 C; 875 G; 893 T; 0 others;
     gatcaagggt caagtaataa agattgaaag caaacaatca taccttggcg taatccttga        60
     cagcaagcta accctcagct cccacgtcac aaagctgatg ggcaaataca ctacagccta       120
     cagaaaaatg acatggattc taaacagaag aagcaaactc cctaccaaga ctaaaatgct       180
     gatccttaag tcagtccttt caccaatatg gcagtatgcc atagcagctt ggggtcccct       240
     tgtgacggat gcacagataa gacggatcca agtcgaggaa aataggaaaa tgagagacat       300
     atgcagagcg ggtagataca cgagcaacca aactataagg gaccgctatg gaatcaaaac       360
     agtagaagaa ttctatcaac aggcactcca caggttctca gaaacaataa aatctcaccc       420
     aaatatagct gtacgcagga tattcacaag gcactatatc ccgaacagac tagaaagaag       480
     caggcagagg tacttgaaaa tgacaaatga acacatcacg caaaaacaga ctggacaaac       540
     actctcacct aaactcctaa aaatccctga tctaaatgac tgcagaaccc ttaaaaagcg       600
     gaatgaaaga gataaaataa ggcaaaccca tctaattgaa ctccccaccc tgctgagact       660
     agaggaagaa gaggaagagc ttagaagaat aaaaaaacag gaagagaggg aaagaaggga       720
     aaaggaaacc caaaagtggc ctccagacag atggtgtgaa ttagaaatta acctatataa       780
     taagcaatat agaaggggcg atctaaccag gcaggaaatc atacaaaaat ttagaggaca       840
     accactaaat gtacagagga taattttacc cgactataaa ggagaccagg aacacaatta       900
     aaagtaaatc atgggaaagc aggggaaaaa aaaacagaag taacaaaatg gcggaagggg       960
     tggcaaaata tatataaaaa taagaaaaga tagaaataaa aaggctaaag gctcacttac      1020
     aggttaattc aaaagggaaa cgtgcttaca tatctaatgg taaaaactaa cttataacac      1080
     ctactggatg acatagtgag gatgccacag gttgcgcact tgaatcacgc tttcctggcg      1140
     agattgttaa ggcatcaccg ggatcccgtc tctctttcct aactggagga ctcatgcctg      1200
     aaatcttttc cgcttcaccg gcacctgatg gccatatctg ctactgcgcc ttgcgctcca      1260
     cggacgctcc ttcctgaaag aaagagaatt tgttttagtt ttcctttctc ttcttaaaaa      1320
     tataacaaaa acagcagcag tagccgacca acaacatact tagcttacca aggcagcagc      1380
     aatgatacca acagaagccc tacagtgtgc tgaacaatat gccgcccacg cccaccactt      1440
     ctggaactca ggaatggggg gtacggaatg ccggaaactg gaggattcgc ctcaaatgtt      1500
     acgcttacat ctttgagcaa atcgcctgcc tcctcgtcta acggcccggc gtcttggtac      1560
     gcccagaagt agcagcggta gcaggattag cagcctccac agagatatgt tcatcccagc      1620
     atcagtccag ttggcattgt gatgccgccg tagcgtacgc cctcagagac ccgactggaa      1680
     tcccaggaca agagacggca gcacgcctgg gcttaggcgc gggacaacat gcagagattc      1740
     gtcaatgaga atggcggcac tggaatcacc tttcagctga gcgggataat gagtcggcaa      1800
     cgcaccgcac tatcagcagc aataacaaca tcggcagatg acctggaaga aaggaaaaaa      1860
     catgtatcag tcttttcttt tctttttttt tcccattagc atgcgttttt aaattccatt      1920
     cctgaaaacc ggcgttttcc tgtaaaagac actggacggc ggcgtttgtt ttaaatgcaa      1980
     agattggatg cttgcatcag ggctgacgtc cttgaatagc cgatgccttg taattgcctg      2040
     catagccgcg gaggtcctga tgacggatgc tggcctgtat ttggccacca ctccgatgcc      2100
     atgacagcag caacagcagc ggtttttgca aatgagaggg atcaggaggc ggcaacacat      2160
     tcacccgtag cagcaacaac aagcagtggt agcatcagca gggagtcttc tcgccacaat      2220
     agccatttgg aaatttctcg acgacccgac ttcctgcttg gcccatggtc aatcacactg      2280
     gaccagttaa cagcggcgtt ttaccctgga agaaagaaaa cttgtattat tcattccctt      2340
     ttctctcaca gttgggtatt taagtgcatt cctggccaac ctagcgtgtc tcctggcaat      2400
     gacgtcggac tcaacgcatg cttcccttcc gacacagtaa ggatgttcgc atctgggctg      2460
     acgggccagg ccggtccgtt gccatacatg ctagcgtttc cgcggcggcg tagtgaacat      2520
     caaaccgtat aatggcgaag acgacgatga tccggccgga tggcagctcg acgacggtag      2580
     caggccacca tgcccgccag cccgcagcta ggatagcagc aacatcagcg tcttattaac      2640
     gcgaacggcg gcactggccc ttagctgacc agctgcaaca acatcagcga cgcagtctcc      2700
     accagcagca acaacagcag cggcgcttgc gacagcagca gcagggaatg gttctgccgc      2760
     agtcgcctat tgctgcctat aaagagcatt ccttgccaat tggctttctg tacgacgacg      2820
     atgatcctgc ggacaaatcc acctttccgg acgcctgagt attatggcga gcctgctgat      2880
     cattgtttct ccgactcctt acttgaccac tggacaatca tacaatcacc ggcttttcac      2940
     atctggaaga aagaaacctg gattagtatt tgcccttcag atttgtatga aactgcattt      3000
     ctggccaacc ggagtgtttc ctgcagacga cgctggactg cgacgcactt ttttctacca      3060
     acacagatgg gacgcttgca tcagatctga cgggccagac tggccgatgc ctggtacacg      3120
     atggcatctc cgcggcggcg agatgtgcag cgacgctgaa agcaataata attcttttac      3180
     tttgcagtat caaaaatgag aagccacatc acaatttaca tcagcaaaaa ttacacgtga      3240
     tatctttttc ttttgcctag gagtagtgag acctgctacc aaaatgacca gtaataccgg      3300
     ctaacggaag cgagatatcg ataatcattc tggcggtaaa atagccagaa catcgataac      3360
     cagctgtgca ttttcccttc gatttatcga agtcaaatag cccgcctagg ctatcggacc      3420
     ggatcggcaa gtcagtagtg attaaaaatc cggcagaggc gcctgtgcag cagctaccca      3480
     aagtgaacac gacgaaacgc aacaacaaaa tggacggaca taatggagat caaagtgaag      3540
     gatgggcaac agtgctatct atctcctcgg atgatagtaa ctccttgtcg tcgctgcata      3600
     tataaaataa taaatttctt aaaataattt catcgctgga ttcctgcgcc accataaatt      3660
     acttatagaa tacacttaac actgtaccca ctaatgctaa aaattttctt atacaatttt      3720
     actttaaagc taaaactact taaactatgg cgcgtaaaac ggccgtcaaa aatatccaaa      3780
     aattgtactt gccataaaca aattctaaca taatgtaaat cctaaatcgt aaaatcatgg      3840
     cgaacataac cgccgccaag caaatcaaaa aatgttccta gaaattgtaa atcttaaacc      3900
     tacttctcta actaaagcgc gcacaactgc cgctgatccg aaattgtaaa atgccataaa      3960
     ttgtaactat atattttata aaaaaaatca gagtacaata aaatgacagc gccgaaaggc      4020
     actgaaaata tttaaaaaaa aaaaaaaaaa aaaaaa                                4056
//
ID   T412LTR     repbase; DNA   ; DRO   ; 481 BP.
XX
AC   M30371;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   D.melanogaster extrachromosomal transposon 412, 5' long terminal
DE   direct repeat.
XX
KW   transposon; DROTN412C; T412LTR.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-481
RA   Shepherd M.B., Finnegan J.D.;
RT   "Structure of circular copies of the 412 transposable element present
RT   in Drosophila melanogaster tissue culture cells, and isolation of a
RT   free 412 long terminal repeat.";
RL   J. Mol. Biol 180, 21-40 (1984).
XX
DR   GenBank; M30371; Positions       1     481.
XX
SQ   Sequence 481 BP; 159 A; 102 C; 93 G; 127 T; 0 others;
     tgtagtatgt gcctatgcaa tattaagaac aattaaataa aatagcatat taacttatgg        60
     cagcactttg ttgctatgtt tatgtttatg tttatgcacg cagttaggcc agggcggatg       120
     taacatgatc acccactcga aggcaaaaag tataagtgca tggtcagcat tcacacgccg       180
     accaaataca tattacatac gtacatacat atctcgctct cccgataagc ctagatatat       240
     aagatataca taagaacgcc gctccgctgc tggcgtaccc ggcagcgcag ctacgcggat       300
     tagcctaagt ccaaatatat taaaaactgt aaaatcggag agactctgta gacgttgagc       360
     ggacagaacc atttctgcct actctaaaat caaaagaaga aattgaataa atatatgtca       420
     gcccgacggc tgccttcaac ttaaaacgga cttgtgttct gaattggagt tcatcattac       480
     a                                                                       481
//
ID   TRANSIB1    repbase; DNA   ; DRO   ; 1816 BP.
XX
AC   .
XX
DT   31-JUL-2000 (Rel. 4.2, Created)
DT   31-JUL-2000 (Rel. 4.2, Last updated, Version 1)
XX
DE   TRANSIB1 is a DNA transposon, a partial consensus sequence.
XX
KW   DNA transposon; transposase; TRANSIB family; TRANSIB1.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1816
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB1.";
RL   Direct submission to Repbase Update (2000).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB1 belongs to the TRANSIB family of DNA
CC   transposons. It has generated duplications of the CANTG target
CC   sites upon its integration into the genome. TRANSIB1 has 40-bp
CC   terminal inverted repeats and it encodes putative transposase
CC   which is not similar to any known transposases.
CC   There are ~20 copies of TRANSIB1 which are ~94% identical to the
CC   consensus sequence. Putatively, TRANSIB1 lost its activity several
CC   million years ago.
CC   Putative TRANSIB1 transposase:
CC   MKNLAKCNRTIEALKKKHSSWLSSTMMVVVDQNNNQVASDCLMGRPRLSYSDAGSRLKRKIATDLANIEE
CC   NNTSLLVHAASISAKKEKMGDTAFVLKQTISTSTASTEIRKKLIFSEPVPLTPIQALAFLIDSSLSKAKY
CC   NDMRALNKTQFSNIYPSYNKVREAKLACRPAGVHVTETFAQVSFQNLLNHTASRIILMHYSYPWIHRILY
CC   FQA.
XX
SQ   Sequence 1816 BP; 626 A; 308 C; 309 G; 571 T; 2 others;
     cantgcacac tgggccagat tccctttttt tttggcataa agtcaaaaaa ttttgtaaat        60
     tgtattttga atttaactat atattatgaa agagcataga ttagggacac caaaacgata       120
     tttaaaaaca tttaagttgc aacactgcat tttttatgcg atatcaaatt catatgtttg       180
     atcagctgtt tgttcaagca aaattggcgc gaaactttta ctcaactttg tgattctgtt       240
     aaaaatacac cacgtgtcca aatattttca aataaaatgg aatataaagg tcaaggtatg       300
     cttaatatag atataactta ctgatttaga attatgtgtt ccatgttgta attgttgttg       360
     tctttgttta cgtcttagtt taggcaaaat ctaaccaaag tgttcgtcta ttgtggagtg       420
     agaaatgatt tgtgccaact tgtgccaaaa actaataact gatgtgttta ctcaaaactg       480
     taattaaatt gatgttagta acgccttttg cctaaatttg cctatgctct ttatattttg       540
     ccgtttaaga caagtttgag attagccgat cggttctgct ggatgaatgg atcaaaggag       600
     atcgaaatga caaagcctta gttgactggg ttgttggcga atttaaatta aatgatatta       660
     ctattgacga gaaagctaaa atcgctaagc aaatcagaag ctttcaccta tatataatga       720
     aaaatctggc taaatgtaac cgtacaattg aagcattaaa aaaaaaacat tccagttggc       780
     tttcatccac gatgatggtt gtcgtggacc aaaacaacaa ccaagtcgct tcagactgtc       840
     taatgggacg acctcgactc tcttacagtg atgcaggatc acggctcaaa agaaaaatag       900
     caacggatct ggctaatatt gaagaaaata atacaagtct tcttgtccat gcagcatcaa       960
     tttcagccaa aaaggaaaaa atgggcgata ctgcttttgt attaaagcaa accatttcaa      1020
     cttcaactgc atccactgaa attagaaaga aattgatatt ctcagagcca gtaccgctca      1080
     caccaattca ggctcttgca tttttgattg acagctctct atccaaagca aaatacaacg      1140
     acatgagagc tttgaacaaa acacaattta gcaacattta tccatcgtat aataaagtca      1200
     gagaagctaa attagcgtgt agacctgcgg gagttcatgt gacagagacc tttgcccaag      1260
     tatctttcca aaatttgctg aatcatacgg ccagtcgaat tattcttatg cattattctt      1320
     atccatggat tcatcggatc ctttactttc aagcctaaat ataaacaaaa gatcgtctca      1380
     aaataaaaaa atcgctttgc cgaaagaagt catcaatctt ttagatgcac caaatgtaga      1440
     acatattaat aatgaacatt tttgggaagc gatgatagcg actcggattc ggatcacgat      1500
     gatccatttt ctatgcattt ggacgtagaa aattttgatt aatataatag tataattata      1560
     tgtatattaa atagatacat aagaaaaatt cagcttaaat ttattatatt aattaataaa      1620
     aagaaataat catgccaaat ctactcctta actttatatc ctaatatggg cggtatgggt      1680
     gggcgtggtc cgatttactt gaaatttcac gtacgtattt taaatgtcaa atgcaccaat      1740
     tctacaaaaa tgcagctctc tagctttatt atttgacttt atgccaaaaa aagggaatct      1800
     ggcccagtgt gcantg                                                      1816
//
ID   TRANSIB3    repbase; DNA   ; DRO   ; 1944 BP.
XX
AC   .
XX
DT   01-AUG-2000 (Rel. 4.3, Created)
DT   01-AUG-2000 (Rel. 4.3, Last updated, Version 1)
XX
DE   TRANSIB3 is a DNA transposon, a partial consensus sequence.
XX
KW   DNA transposon; transposase; TRANSIB family; TRANSIB3.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1944
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB3.";
RL   Direct submission to Repbase Update (2000).
XX
CC   [1] (Consensus)
XX
CC   TRANSIB3 belongs to the TRANSIB family of DNA transposons.
CC   It has generated duplications of the CNNCG target
CC   sites upon its integration into the genome. TRANSIB3 has 43-bp
CC   terminal inverted repeats and it encodes putative transposase
CC   which is not similar to any known transposases.
CC   There are ~10 copies of TRANSIB3 which are ~95% identical to the
CC   consensus sequence. It is likely that TRANSIB3 lost its activity
CC   several million years ago.
CC   TRANSIB3 encodes protein involved in transposition:
CC   KNYVFVDEYLFGHAELLDIWSNNSRSEDAVRQHIFKKIGQNNLNECCISLLNKKVKSFFDYIRK
CC   HLPGCNRSLDRLKKKHFKWLASSISIIADCKTPKLVYEKANDRLKRKLASDLFGPENNTSVPLL
CC   LHAASVSSKKGNEKDMAVVLKAAGNSDNINNIKRKMFSSEPTQMSVDNALAFLFENGFTKSQYI
CC   NLKRNTKVHGFDIYPSYPDVLNAKLKLRPNGIEYFENKAQVKLQQLLNHTTSRILEMQYETFKA
CC   NTNSIECQLIFSYGYNGSTGQSIYKQRYEEIGAVYDGSLFVTTIVPLKLVDNEQKIIWINRSPQ
CC   SIRFCRPLKIEFIKETRELILAEKENLDTQTRNLHIYLHKINNINIFVKYVGQMTLIDGKNLHL
CC   NMILFYFIFYI
CC   This protein is 39% (first 250aa) and 41% (first 290aa) identical
CC   with those in TRANSIB1 and TRANSIB2, respectively. There is
CC   only partial ~60% nucleotide identity between TRANSIB3 and
CC   TRANSIB2 or TRANSIB1.
XX
SQ   Sequence 1944 BP; 696 A; 285 C; 324 G; 639 T; 0 others;
     cacactggtt ttttatgtgt ttttttttgg cagaaagtca aaaaaaaata ttttaacgga        60
     ataaaaaaat gtatggtttc tttatattta ggatagtctt attagataaa aagtcgattt       120
     ttactttttt acgcaaaact ggcttatcgt cgacctctca aagacagctg attgtcgata       180
     acatgcgtaa gacaaaattg cggcaaatca ttttgcaaca tttgtggttt atatttcctc       240
     agagaattaa aaaagttcaa agttttgtca tggaaaacag tagcacaggt atgtagattt       300
     gtagttcact aacatttttg tgtatgttat atgtttttgt gtagttgtat cgtgttttgt       360
     ttatgtgcct tttttacagt caacttaaca aatgtagctg tgtttcgtgg aatataactt       420
     ggaaaccact tcaaaaaaat tttaacggca agttattaac taacatgtgt ataatattat       480
     acaactagtt tcatatgctc ctttttgttc ctttttgaaa aaattacgtt tttgtagatg       540
     aatacttgtt tgggcatgca gagctgctag acatttggag caacaatagt cgctctgagg       600
     atgcagttag gcagcatata tttaaaaaaa ttggtcagaa taatttaaat gaatgttgta       660
     tttcattgtt aaataaaaaa gttaagtcct tctttgatta cataaggaaa catttgccag       720
     gttgcaatag atcgttggac aggttgaaga aaaaacactt caaatggctg gcatctagta       780
     ttagtataat cgctgattgc aaaactccaa aactagttta tgaaaaggct aatgaccgac       840
     ttaaacgaaa attagcttcg gaccttttcg gacctgaaaa taatacttct gtaccattac       900
     tcttgcatgc tgcttcagtt tcgtctaaaa aaggaaatga aaaggacatg gcagttgtat       960
     taaaagcagc tggtaacagc gataatatca ataatataaa aagaaaaatg ttctcttctg      1020
     agcccacaca aatgtccgtc gacaatgcat tagccttttt atttgaaaac ggatttacaa      1080
     aaagccaata catcaattta aaacggaata caaaagtaca cggctttgat atttacccat      1140
     catatcctga tgttcttaat gctaaactaa agcttagacc aaatggcatc gagtattttg      1200
     agaataaggc gcaagttaag ttacaacaac tcttaaacca cacaacttcg cggattcttg      1260
     aaatgcagta tgaaactttc aaagcaaata ccaactcgat agaatgccaa ttaatattta      1320
     gctatggata taatggatca actggtcaga gtatttataa gcaacgttat gaggaaatcg      1380
     gtgctgtata tgatggatcg ctgtttgtta ctacaattgt gccattaaaa ttagtagaca      1440
     atgaacaaaa aataatttgg atcaacagat cgccacaatc tatacggttt tgtcgtcctt      1500
     taaaaattga atttattaag gaaactcgag agcttatatt agcagaaaaa gaaaacttgg      1560
     atacccagac tcgtaatctg cacatatatt tgcataaaat aaacaacatt aatatatttg      1620
     taaaatatgt cggtcaaatg acactaatag acggtaaaaa tttacatctt aatatgattt      1680
     tattttattt tattttctat atataatatc aataaaatat ttaattaaat acagatacaa      1740
     aaatattttt tttttggtaa ggtaaatatt tttatggcat atcggccaga tcgtttatat      1800
     ggcagctata tgaaagttga ccaaatcact tgaaattttg tgaatcatct tgggggaagt      1860
     aaagagtaac acaaaccaaa tttggtgaag ataggtcatc atttcgaatt tctgccaaaa      1920
     aaaaacacat aaaaaaccac agtg                                             1944
//
ID   FW_DM       repbase; DNA   ; DRO   ; 3520 BP.
XX
AC   M17214;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.melanogaster Fw repetitive element.
XX
KW   Repetitive element; DMFW; FW_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3520
RA   Di Nocera P.P., Casari G.;
RT   "Related polypeptides are encoded by Drosophila F elements, I factors,
RT   and mammalian L1 sequences.";
RL   Proc. Natl. Acad. Sci. U.S.A 84, 5843-5847 (1987).
XX
DR   GenBank; M17214; Positions       1    3520.
XX
SQ   Sequence 3520 BP; 1203 A; 940 C; 615 G; 762 T; 0 others;
     tgaaccagaa aacaagcctc ctagaaaaaa cgaggttcac ccaatttaca aactccagct        60
     ccttttgcac cgtaggatca cggtagaaga gccgcacaaa cgcaacgctc ctgtacaatg       120
     tacaaactgc caagagtatg gccacacgag gtcatattgt acacttgccc cggtgtgcgt       180
     agtctgtgga gatctccacg actccaaaca gtgtcaaatt aacaaagaaa atgcatgcga       240
     gaaaaaatgt aataactgcg ggggcaatca cacagcaaac tacagaggct gtccaatcta       300
     caaagagctg aaaatccgtc ttcacaaaag aatgaacacg gcgcgggtac acaaggatca       360
     gctaccctga taccatcaga gacaaatcct gaagtaattt tctcgaaagc agctagtttc       420
     gctccctggc ctacattcaa cactaacaaa gacaacattt gctaacgttt taaaatcagg       480
     tatgacgcct ccaacccaaa actcccgaac tccacatgaa gtgcacacaa aattagacac       540
     acaacaaaac tatcacccag ctgcgcagca ggaaacaaaa actgaagcta tgatgcaagc       600
     cttacaacag agcatgatgg aatttatgac atttatgaag accaccattc aagacatgat       660
     gcgtaatcaa aaccttttga tacaaatgct tgtagcccaa caatcaaata aataatggct       720
     accttacgca tagctacgtg gaacgccaat ggcgtctcac agcgcaaact tgagctagct       780
     caattcctac atgagaagca tatcgacgta atgcttcttt cggaaactca tctcacaagc       840
     aaatacaatt ttcaaataag agactaccat ttctacggta caaatcatcc cgacggaaaa       900
     gcacacggtg gcaccgccat actcataagg aaccgtatga agcaccactt ttacaaagaa       960
     tttgcggaaa atcatcttca ggccacatct atcaacattc agctggatga caacactctc      1020
     cttacactag cggccgtata ctgccccccc cgtttcacag tattagaagc tcaattcctg      1080
     gatttcttcc aagcactagg gccacacttc attgcagcag gcgactacaa cgctaaacat      1140
     actcactggg gatcgcgact tgtgaaccca aaaggaaaac agctttataa gacgataata      1200
     aaagccacta ataaacttga ccatgtttcc cccgggagtc ctacatactg gccatcagac      1260
     ctcaataagc tgccagacct gatcgacttc gcagttacga aaaatatttc ccgcagtttg      1320
     gttaaagctg aatgtctgcc ggatctctca tctgatcact cgcctgtact aattcacctc      1380
     cgccgatacg cagaaaacgt gaaaccacca accagattga cctctagcaa aacaaactgg      1440
     ctcaggtata aaaaatatat aagttcacat attgagctaa gcccaaaact caatactgaa      1500
     tctgatatag agagctgcac gtgtgcattg caatccatcc ttactgcagc agctcttact      1560
     gcaacaccca aaataacaaa taatacaatt aattcaaaaa agaccaacgt acaaatcgag      1620
     caactcgtcc acgtaaaacg tcgcttacgc agagaatggc aatcttccag atccccaact      1680
     gcaaaacaaa agctaaaagt agccacacgg aaactggcca acgctctgaa acaagaagag      1740
     gacgacgatc agcgccgata catagagcaa ctcacaccaa caggcacaaa acaaaagtca      1800
     ctgtggcgag cccactcaac tcttcgccca ccgactgaaa ccgttttgcc gataaagaat      1860
     tcatcaggtg gctgggcccg tagtgatgaa gacagagcca acacatttgc cgctcaccta      1920
     caaaatgtgt tcacgccaaa ccaggctact agcacattcg cgctaccgtc ctatcccgta      1980
     aaccgccatc agcaacacac cccaattgtg tttcgtccta aagaaataac taaaataatc      2040
     aaagacaatc tcagcccgaa aaaatccccc ggctacgacc ttataacacc ggaaatgatc      2100
     atccagctgc cacattctgc agttcgctac ataaccaagc tctttaatgc catcaccaaa      2160
     cttggttact ttccacaacg atggaagatg atgaagatca taatgattcc aaagcctggt      2220
     aagaaccaca cagtcgcttc atcttacaga ccaataagtc tactctcatg catttcgaaa      2280
     ctattcgaaa aatgcctgct gatccgactt aatcaacatc agacatacca caatataatc      2340
     ccagcccacc aatttggatt tcgcgaaagc cacggaacca ttgaacaggt gaatcgtatt      2400
     acaacggaaa taagaactgc atttgaatat cgcgaatact gtacagcagt atttttagac      2460
     gtatcccaag cattcgacaa agtctggctc gacggcctaa tgtttaaaat taaaatatcc      2520
     ctacccgaaa gcacacacaa acttctaaag tcttacctct atgacagaaa gtttgcagtg      2580
     cggtgcaaca ctgccacttc cactgttcat acaattgagg ctggagtccc ccaaggcagc      2640
     gttcttgggc caaccttata cctcatctat acagccgaca tccctacaaa tagtcgctta      2700
     acggtatcca catttgccga cgatacagct atccttagcc gttcaaggtc ccctatccaa      2760
     gctacagcac agttggcact gtacctcatc gacattaaga agtggctctc tgactggcga      2820
     ataaaagtaa acgagcaaaa atgcaagcac gtgacgttta cgctaaacag acaagactgt      2880
     cctccgctct tgttgaacag cataccactc ccgaaagcag acgaggtaac gtacctagga      2940
     gtacacctag acagaagact cacatggcgc aggcacattg aagccaaaaa aacccaactt      3000
     aaactcaaag ccaacaactt acactggctc atcaactctg gttctccgct cagcctagat      3060
     cacaaggtct tgctctacaa ttctatattg aaaccaatct ggacctatgg ctcacagtta      3120
     tggggcaatg ccagcaacag caatattgac atcattcagc gagcacaatc aaagattctg      3180
     agaaccatca ctggggcacc gtggtacgtt cggagtgaaa acatccaaag agacttaaat      3240
     atcccatcag ttaccaacgc aatcacggaa cttaaggaaa aatacctata gcaagcttca      3300
     cacgcacccc aaccacctag cgcgaggtct aatccagctc agcagccgtt cccgtctccg      3360
     gcgaaaggac ctaccaaccc agcgaataaa ttattaggcc gtttaaacat agacagttgg      3420
     aaaaataata caactgttca aaaaatactt gttatagtta agatttttaa acttattgtt      3480
     agttcttata caagaagatt caataaataa aaagcaaagt                            3520
//
ID   XDMR_DM     repbase; DNA   ; DRO   ; 360 BP.
XX
AC   M16263;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.melanogaster dispersed middle repetitive DNA sequence.
XX
KW   Dispersed middle repetitive DNA sequence; DMDMR; XDMR_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-360
RA   Waring L.G., Pollack C.J.;
RT   "Cloning and characterization of a dispersed, multicopy, X chromosome
RT   sequence in Drosophila melanogaster.";
RL   Proc. Natl. Acad. Sci. U.S.A 84, 2843-2847 (1987).
XX
DR   GenBank; M16263; Positions       1     360.
XX
SQ   Sequence 360 BP; 138 A; 56 C; 42 G; 124 T; 0 others;
     ccaaatttaa atgcaaatcg atttggattt taataacaaa ctcaacgagg tatgacattc        60
     catatttggt ctattatttt caatgttatg atcaaaatac caaatatttt tttcacaaaa       120
     aaccaggaaa acgaaatttg gcaaaaaatt taatatttaa gtagagtttt ttgggtataa       180
     cttgactaaa aatggtcaca caactaaaat aattaccatt ttgtgctcct aattaccaat       240
     actaatcatc cccatcactt tttggcggac tttgaaaaat taatttttgc ccaaattttc       300
     gcattttttg taaggggtaa ctcatcaaaa tttttaaaaa atgccaaaaa aataaagttc       360
//
ID   TIRANT_I    repbase; DNA   ; DRO   ; 4352 BP.
XX
AC   X93507;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   D.melanogaster LTR retrotransposon Tirant - an internal sequence.
XX
KW   LTR retrotransposon; GYPSY superfamily; TIRANT_LTR; TIRANT_I.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4352
RA   Viggiano L., Caggese C., Barsanti P., Caizzi R.;
RT   "Cloning and characterization of a copy of Tirant transposable element
RT   in Drosophila melanogaster.";
RL   Gene 197, 29-35 (1997).
XX
RN   [2]
RP   1-4352
RA   Caizzi R.;
RT   "Direct Submission.";
RL   Direct submission to Repbase Update (1995)R. Caizzi, University of
RL   Bari, Institute of Genetics, Via G. Amendola, 165/A, I- 70126 Bari,
RL   Italy.
XX
RN   [3]
RP   1-4352
RA   Caizzi R.;
RT   "Direct Submission.";
RL   Direct submission to Repbase Update (1997)R. Caizzi, University of
RL   Bari, Institute of Genetics, Via G. Amendola, 165/A, I- 70126 Bari,
RL   Italy.
XX
DR   GenBank; X93507; Positions     416    4767.
XX
CC   The 5.3 kb TIRANT present in the GenBank sequence X93507 possesses
CC   identical 417 bp long terminal repeats (TIRANT_LTR in Repbase) at
CC   both ends. There is a serine tRNA binding site downstream of the
CC   5' LTR sequence and a polypurine tract upstream of the 3' LTR end.
CC   The insertion leads to the duplication of a host-site CGCG sequence.
CC   In situ hybridization to salivary glands chromosomes showed
CC   evidence of the mobile nature of the element. The DNA sequencing of
CC   the cloned 5.3 kb element revealed that TIRANT possesses an open
CC   reading frame (ORF) that shows similarity with the envelope protein
CC   encoded by the gypsy and 297 retrotransposons. In addition, the cloned
CC   element appears to be a subgenomic fragment of a not yet identified
CC   complete element, because only the integrase domain of the reverse
CC   transcriptase gene is found [1].
XX
SQ   Sequence 4352 BP; 1589 A; 998 C; 683 G; 1082 T; 0 others;
     ctggcgcagc cggtaggatg tcctacctat taataattac ctacctgtaa gtaaacatgt        60
     aagaaacgaa acaaactata tgcaagatgt cgactgaaag tgactaggaa caaattttta       120
     taaaacaaaa ttgaagttgt gaagtaccaa atgaaactca aacatatatt caaacacagg       180
     aaaaaaaaaa gagagaggaa aaatgtaaaa taaataaata tacaaaaaaa gtgcatgtgt       240
     accgtactgc cgcgctgacg tggaatctat cgctgatcat cacgccatcg gtatgtccat       300
     actctgccaa acgtcataat ttttataaaa aagtgcaagt gtaccgtact gccgcgctga       360
     cgtggaatct atcgctgatc atcacgccat cggtatgtcc atactctgcc aaacgtcata       420
     attttttata aaaaagtgca agtgtaccgt actgccgcgc tgacgtggaa tctatcgctg       480
     atcatcacgc catcggtatg tccatactct gccaaacgtc ataattttta taaaaaagtg       540
     caagtgtacc gtactgccgc gctgacgtgg aatctatcgc tgatcatcac gccatcggta       600
     tgtccatact ctgccaaacg tcataatttt tataaaaaag tgcaagtgta ccgtactgcc       660
     gcgctgacgt ggaatctatc gctgatcatc acgccatcgg tatgtccata ctctgccaaa       720
     cgtcataatt tttataaaaa agtgcaagtg taccgtactg ctgcgctgac gtggaatcta       780
     tcgctgatca ccacgccatc ggtatgtcca tactctgcca aacgtcataa gtttttataa       840
     aaaaaaaaga gtgcaagtgt accgtactgc cgcgctgacg tggaatctat cgctgatcat       900
     cacgtcatcg gcacttacat acgctggcca acgcatcgcc aaagcctcta tatacactta       960
     tatatgtgag catacaatat caactacaat ccaatacatt cacgtactgt accgcctcgt      1020
     tggcatggaa tcaaacgctg atcaccatgc caccgtggta aacaaacaaa gcaccaaagc      1080
     ctccctaata cattgtacac tcaaaacgta cactgccata cgtcggcgaa aaatcaaaac      1140
     ataagcaaaa atcatttcaa accaagcgag gctcattctg cgtaccacaa cgacaacgac      1200
     actgcatgtg tagtggcgca cccatgtctg ggtagccgag gtaaggggaa aacgcttgag      1260
     tatcgtcaag tgttcttgcc tttcactctt ctacaatggg ttgctacgct catgtattgc      1320
     acattcaaaa taaccaaaac aaatgtacta aagaagtcga catatacaga tatatttggt      1380
     tccctttcat tgtgtaattt ggtatatcaa acaaatacta ataccaatca cattgcaaaa      1440
     tataaaaggg aaaatataaa gccaaagaca gacacctata cacatcatat ctacacaccc      1500
     atacactcta gtaaacaaga aatttgttca ttatttttca atcatacata atatactaag      1560
     taacctcaaa tttaatgtca aaaaagttcg tttacaacct taggaaaact acacgttcag      1620
     ttgttggagt tccaccaaac ctacttctca gcccacagtc aatttaaact cattagatgt      1680
     ttgatcttcc tccccgaaat tactgatagt acggagatcg aaaaaattat aaccgactat      1740
     cactataata gtaaccatcg agggatcgat gaaacatatt tacacataaa acgacaacag      1800
     ttcttcccac atatgaagga gagaataact cagttaattc gaaaatgtga aacatgttta      1860
     aaattaaaat acgacagaca acctcaaaag atcacttacc aaatatccga actaccttca      1920
     aaaccgttgg acatcttaca tatagacatt tatactatta acaaaaatta taaccttact      1980
     attatcgata aattttctaa atttgcggct gcctacccta taactaatag gaattgtatt      2040
     aacgtagtta aagccttaaa acatttcatt tcccaatttg gtattcccaa aaagctgatc      2100
     tatgatcagg gagcagaatt cgctagcgat atgttcaata agttctgcac tcaatttaac      2160
     attgacctgc acgttacgtc cttcaacaat cctctagtaa ctctcccgtt gaacggcttc      2220
     actcgacact aactgagatt tacagaataa tacttgacgt caggaaacaa cagaaactca      2280
     gtagcgaaca tgacgagata atgtccgaaa ccctaatcac atataataac gctattcatt      2340
     ctgcaactaa acataccccc tttgaactat ttaacggacg tactcatata tcaaccaaac      2400
     aatccagttc aataacgaac acgactactt aacgaaatta aatgaatttc cgccgagaag      2460
     ttgtaccccc tcatcacgga caaactttca aatgacgtag ttaggagaac cctaaaatta      2520
     aatgaaaccc gaacagaccc cgtagaccta caaccagaca ctttagtcct taggaaggaa      2580
     aacagacgta ataagattac acccaggttt tcgattcaca aagtcaaaca cgacaaaggt      2640
     catacattga taactgctag gaatcaaaaa ctacacaaat caaaaattcg aaaaacagtt      2700
     ttgaaaaaag acaaaagcaa caacgtaccc aacactgata ataaatgacc ccactacctc      2760
     ttaacttacc atttcaggtt cacccttgtg ccaactcagg ctatccatgt ccattattta      2820
     aatgataacg cccctatagc caagatagaa ctagggaaag ccttactaat tgagaggtac      2880
     aaaataatta gtcatgtaat caacctacaa gactacagca gatgtatgga acaattccat      2940
     ctgaccatta ataaatttaa ccccgattcc acgttgacgg actccgtcac aattttaaaa      3000
     accaaattaa cccaagccca agtaaagctc aaagccctta cgccttcata tagaaacaaa      3060
     cggggtttga ttaacggatt ggggagtcta gtaaaggcgg ttaccggcaa catggatgcc      3120
     aacgacaata aagaaataca tgaagaactt gacaatataa agaaaaattc cgaagtcagt      3180
     aacgacaatc tccaaaaaca agtaatgttt aacaacgaaa tacttatccg gttcgaaaat      3240
     atcacggacc atataaataa tgaacaaatt ttgataagta aattctttga tacctcacaa      3300
     aacaaaatat acaaacactt aaacttacaa gatacccttc tggaagaaat acaatattta      3360
     aataggatta attataacat agaattattc attaaccacc taaacgacat aacagaaagt      3420
     atgctattgg cgaaaataaa tataattccc aagttcatcc taaatgaaca agaaatggat      3480
     aaaataaaaa caatactgga aaaacaaaat atcacagtca aaaatgaaca aagtatatac      3540
     aatttcctac aaatgaatac actaaattac gaacaaaaga ttatttttaa tatcaaagtg      3600
     ccaattttta aacaaccttt tcataccctc gccagactag ttccattacc aataaataac      3660
     acatattttg taataacccc aaattaccta gcttataata ttaataataa gaaatttcat      3720
     atgacccgta aatgccccaa actggataat acattcttgt gcgacgagaa cttctacgtt      3780
     gatacaccac agaacaacac atgcctggaa caccttttga acggagaaaa cagttcctgc      3840
     gatgtacggg aaaccggccc catcaccgac gtgttcgagg cagagagagg ttacatcttc      3900
     gcattcaacg tgaacaaact gaaggtatcc ctaacaaacg gctccgagct ctcaataatg      3960
     gggtcagcca tcatcagata cattaacgaa acaatacaga ttaacggtat cgattacgac      4020
     ggcacggttg acacgttccc tgaacagacg gattttgatc ttccccccat gcgaaaagta      4080
     actaggaata ccactattac ggtactaagc ctagaaaaac tgcacctcga agccacccaa      4140
     acaatggata aaatcctggc cgtccatcac aatactatac agcacacctg gacactctac      4200
     gctctgctcg gattggtaac gttcctagca gtcatcttat ggctgcaccg acgaacgaaa      4260
     cacatcgtcc acatccacga ggatcatcac gtaccaatct acgcgtcatc cataccttcg      4320
     ctatggccgt cacttcgaac tgggggggga gg                                    4352
//
ID   DMCR1A      repbase; DNA   ; DRO   ; 3102 BP.
XX
AC   AC006215;
XX
DT   01-JUL-1999 (Rel. 3.4, Created)
DT   01-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   DMCR1A is a LINE-like retrotransposon.
XX
KW   Non-LTR retrotransposon; FW_DM; ORF2; CR1-like superfamily; G; DOC;
KW   DMCR1A.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3102
RA   Kapitonov V.V., Jurka J.;
RT   "DMCR1A.";
RL   Direct submission to Repbase Update (1999).
XX
DR   GenBank; AC006215; Positions   18012   21113.
XX
CC   DMCR1 belongs to the CR1-like group of non-LTR retrotransposons.
CC   It has poly(A) tail and it generates 10-15 bp-long direct repeats
CC   upon its integration into the genome.
CC   DMCR1 forms separate family of recently or curently active
CC   LINE-like elements in Drosophila melanogaster
CC   since there are several DMCR1 copies having lesser than 5%
CC   divergence to each other. DMCR1A is most close to G_DM element
CC   (25% divergence both on nucleotide and protein levels).
XX
SQ   Sequence 3102 BP; 877 A; 949 C; 642 G; 634 T; 0 others;
     cgaagaccgg ccaccccttt cagcaaaccc tgcaccatca agctcccaag tatctccaat        60
     atgagctaca gagatgcgct catgtctacc caagtgcctc agcaaaccaa tcccaaccaa       120
     acccgtcaaa ccccacctga atctccgcaa cccagtaaca tggaacaaat gtttgctcgc       180
     ttcgaaggaa tggtcgaaag gatgatggag aagatgttct cgcaaatgac gcagcttgtt       240
     gcttccatcc tcaacgcaaa agtatgcaaa gcctaaaaat agttatttgg aatgctaatg       300
     gcctgcagag gagcagagcc gaggtggaac acctcctaaa aacagatgcc atcgatgtac       360
     tactggtatc agaaacccac ttttgtccca gatcccattt tagcattagc ggctacgatg       420
     tcatccctgc caaccatcca tctggcagag cgcgcggagg agcagccatg ctcatcagga       480
     gtggcatcca gtacacggag ctacctgcgt ttcaggagga atgggcccag tgtgccctgg       540
     ccagaatctc cagcctacat ggagacatca ccgttggagc ggtctacttc ccacctagac       600
     actcgatcac cgagactcac ctacaagatt tttttgagtc ctttggacct cgctttatag       660
     cagctggtga cttcaacgcc aaacactcct ggtgggggtc ccgctccatc aaccccaaag       720
     gcagaacgct ccacagattc ctgcagagca gaagactgga ttgccactcc tctggtgagc       780
     ctacccactg gccttcaaac ccttccttgc tgcccgacct cctggatttt gctatctcca       840
     aaggcatagg gcaagacaga ctaacttgct ccaactataa caagctgata tccgaccaca       900
     gcgctataaa aatgcttctc aacatccccg tcctcaaaaa agagttgccc agaagactca       960
     ccgggaagca cactgatgcc tccaagttca cactctggat gctgtcctcc ctgcacccgg      1020
     atcctccact ctccactcca agcaacatcg atgcggcaat caaaactctc acggatgaga      1080
     tgtacaatgc tgccgagttt gccaatcctc ctccttcaac gtccccaaga actcccggta      1140
     gagaccttca cctctggtct ccagaaattg cggccttcgt agcggaaaaa aggcgcctca      1200
     ggagaatctg gttcttctcg cgcaacccaa gggacaaggc agcactcaac agagccatca      1260
     aggaactcaa ggacaagctg tgtaccctac ggcaagactc cttcgacaga ttccttgagg      1320
     agctggaacc tggtgacccg caacataatc tgtggcaagt cacgcgtcat atcaggaggc      1380
     ctgcaaagaa ggcgtcgccg gtgcgcaaag cggacggctc ttggtgccgc tctgaagccg      1440
     aaagagctga agcgtttgca gatctccaga atgcattcac accatttgac agatgcactg      1500
     gcgaagagcg tgctgcaacc accaggttcc tagagagtcc atgtcctcct agcctgccca      1560
     tagagcccgt caccccagaa gaggttgcgc aagagatcgc ctccctaaag gctagcaaat      1620
     ccccaggact ggatcgcatc gacgccacat cccttaaaat gctgccacct ccctgttccc      1680
     agttgttggc caacatatac aacagatgct tctcactagg gtacttcccg agatcatgga      1740
     aacgtgcaga agtcattctc atcctcaaac ctggaaaacc tgaagccaat cttgcctcat      1800
     atagaccgat tagtctgctg acaatcctct ccaaaatact cgaaagagta tttctgcgca      1860
     gagtcatgcc agtactggac gaggctggac tgatccctga tcaccagttt ggcttcaggc      1920
     gatcccacgg aacacccgag caatgccacc ggctcgtagc acgcatccta gatgcattcg      1980
     agaacaaacg atactgttcg gccgtattcc tggatgtcaa gcaggcgttc gacagagtgt      2040
     ggcatcctgg actcctctac aaactcaagt cccaccttcc cagttcccac tatgccctac      2100
     tcaaatcgta tactgaagga agagagttcc aagtgcgatg cggttcctca acaagcacga      2160
     caaggcctat acgagccgga gtacctcaag gcagcgtcct tggtcccatc ctctacaccc      2220
     tgtttacagc agacctccct atcataccct cccgttacct cacagcagcc acctatgcag      2280
     atgacacggc gttccttgcc accgcaacaa accctcaatt agcatcagcc atcatccaga      2340
     ggcaactgga tgcactggat ccatggctga aacgctggaa catcatgatc aacgctgata      2400
     aatcctccca caccaccttc tctctgcgca gaggagaatg ccccccggtc tcactcgacg      2460
     gcgacacaat ccctacctcc agcaccccca aatatttagg gctgacccta gacagaaggc      2520
     tgacttgggg cccccacatc aacaataagc gtatccaggc caacatacgc ctaaagcaac      2580
     tccactggct catcggtaaa aagtccaagc tgcgagagaa actaaagatt ctcgtctaca      2640
     agactattct caagccaatc tggacgtacg gaattcagct gtggggcact gcttgcacat      2700
     cacatagaag gaagatccag cgatttcaaa acagatgttt gagaatagtc tccaacgccc      2760
     atccctacca cgaaaattcc gccatccacg aggagctcgg gattccatgg gtagacgacg      2820
     aaatctacag acacagcgtg agatatgcta gcagactgga gaaccaccac aaccacctgg      2880
     ccgtcaacct tctagaccac agccaatccc taagacgcct gcagagaacg cacccgcttg      2940
     accttactca acatacttaa tcatacttaa cccctaccca agtacactcg atgtactccc      3000
     cttaagttaa tgtttccctc caaaaaattt aattattgtc cactaggaca gattttaaat      3060
     aataaataaa aggctacaaa aaaaaaaaaa aaaaaaaaaa aa                         3102
//
ID   DM412       repbase; DNA   ; DRO   ; 6897 BP.
XX
AC   X04132; X03733;
XX
DT   22-1995 (Rel. 2, Created)
DT   22-1995 (Rel. 2, Last updated, Version 1)
XX
DE   Drosophila retrotransposon 412 genome.
XX
KW   LTR; retrotransposon; reverse transcriptase; DM412.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6897
RA   Yuki S., Inouye S., Ishimaru S., Saigo K.;
RT   "Nucleotide sequence characterization of a Drosophila retrotransposon,
RT   412.";
RL   Eur. J. Biochem 158(2), 403-410 (1986).
XX
RN   [2]
RP   1-6897
RA   Yuki S., Ishimaru S., Inouye S., Saigo K.;
RT   "Identification of genes for reverse transcriptase-like enzymes in two
RT   Drosophila retrotransposons, 412 and gypsy; a rapid detection method
RT   of reverse transcriptase genes using YXDD box probes.";
RL   Nucleic Acids Res 14(7), 3017-3030 (1986).
XX
DR   GenBank; X04132; Positions       1    6897.
XX
CC   repeat_region 1..310
CC   /note="long terminal repeat (LTR)"
CC   promoter 148..154
CC   /note="pot. TATA-box"
CC   misc_feature 168..172
CC   /note="pot. RNA1 start site"
CC   misc_feature 184..188
CC   /note="pot. RNA2 start site"
CC   misc_feature 238..243
CC   /note="pot. polyA signal"
CC   misc_feature 311..325
CC   /note="primer binding site (tRNA binding site)"
CC   CDS 442..825
CC   /note="ORF 1 (RNA1) (aa 1-128)"
CC   CDS 1130..1444
CC   /note="ORF 2 (RNA2) (aa 1-104)"
CC   CDS 1599..2963
CC   /note="ORF 3 (RNA1) (aa 1-455)"
CC   CDS 2876..6586
CC   /note="ORF 4 (RNA2) (aa 1-1237)"
CC   misc_feature 6788..6897
CC   /note="long terminal repeat (LTR)".
XX
SQ   Sequence 6897 BP; 2760 A; 1212 C; 1180 G; 1743 T; 2 others;
     cattcacacg ccgaccaaat acatattaca tacgtacata catatctcgc tctcccgata        60
     agcctagata tataagatat acataagaac gccgctccgc tgctggcgta cccggcacgc       120
     agctacgcgg attagcctaa gtccaaatat ataaaaaact gtaaaatcag agagactctg       180
     tagacgttga gctgacagaa ccatttctgc ctactctaaa atcaaaagaa gaaattgaat       240
     aaatatatgt cagcccgacg gtcttcaact taaaacggac ttgtgttctt aattggagtt       300
     catcattaca tggcgaccgt gacagnntcc aacgctggac gaattgacca aagctggtga       360
     aaacaaagga acaaaggaac actggactgg aagaagactg gactaattaa atggaactgc       420
     aaaaaccaag gaaaaatctg agtgagtaga gttctattga gtatgggcaa acaccgtggc       480
     ggtttgaaaa ctaagctgaa taaacgtata gcccacgtaa ggtggctaat atacggtcag       540
     caaacgccac cggtttggtc gaaagctcta aagctacatg cagagctaga ccacttgttg       600
     caatatcagc aagaattaaa gacccataag ctcgagaaaa ctcactcaga taatattaaa       660
     aatataccca caattaatga agttccaaaa taccaggcat gtccagcacc agcaccagca       720
     ttaacaaaac caaagaagtc ctgcccccct ggctgcgaag gaatctggag tccccactgc       780
     ctggggactt gtgagcgacc atcgacgtct tcagcggcga agaaatagac agcagcgagg       840
     gagtgtcagc gtgccacccc ggcgacgccc agctgacacc tgatagagca tcatcaacag       900
     cagaatataa taataaatat atataaatat aaagtaaata taaaatatat atagataaga       960
     aaaattgtaa gaaatattgt aaaacggagc atatactatt atgccctgtt aacccaatat      1020
     ggcccgtgaa gccatagcta gaatcaggca ggcaacaatg taaaatacaa tttttttttt      1080
     actcttgcga acattgaaag attttataaa tagataattc caaacataaa tgtctataga      1140
     gacaaatgaa ataagtaaaa ctgaaaataa aagtatatac aaaggaaatt ttctattcta      1200
     ttctccaaaa tataaaatta gtatacccaa aatgggtcta atagacacta aaactgtgga      1260
     ctctacagcc aatgtaataa ataaagtaga agtccaaaat gcagacttgt tctggataac      1320
     cataatacta attgtaattg cattaattat ggtatccaat gcattaataa aaatatacaa      1380
     actgcataac aagtgtctta agaaacgata ccgtagcact gctaacggta tagataatat      1440
     ttaaggaaga tctttaataa agtcaattat gaatgaaaat atgagaaaaa ttatatgaaa      1500
     aaaaaaaata ataaataaaa aaaaaatata aaacgtaata ttgaatttat ctacattaaa      1560
     aaaaaaatat atacaaatga ataaatttga agttatgagt ataccacagc atggactggg      1620
     aaaagcttgt tgatcagata aaagatcaaa atgaaaattt cagaaaatcc tataagtgct      1680
     taacgcaaaa cagatcaaca caagctgtaa caatcaatag gaatgcccaa gtcttggtaa      1740
     atagttataa tgaaatcaga gagttgatcc aacaaaatag aaagaatttg gaacgcaaac      1800
     agtgtgctaa ggctttgaac ctactggtga cattaagaga aaaattaata tttataaaaa      1860
     ataaattcag tctccagata gaaattccaa ccatagtaaa caccccacta agaataaatt      1920
     tgaatgaaga cagcactaac tctgacgagg aagataggac tatagtcaag gaagacatta      1980
     aagaggaaga tcttcacgat ctaactatac cagcaaaatt aatgctgaag aacgacgata      2040
     aaacaaataa cgcagccgac tccgaaaata acttaaccat ggcagaagaa gcagctgcca      2100
     ttaggtctta cattagggaa gtcgcctgca cagtgccaga atttgatggg caaaagatcc      2160
     atttacaaag attcattaag gcaatcaaat tggtagacct agctaaggga ccatttgaag      2220
     acattgcagt tgaggtcatt aagtcaaaaa tagttggcac aattttgaac tcagttgaca      2280
     atgaaacgac aattccagca attataaaca aattgcagaa agtagttgtc ggtgagacat      2340
     ccagtaatgt caaagcaaag ctagcaacag ttcagcagag aggtaaaact gcaacgcaat      2400
     ttaccgctga agttgatagc ctgagaaaac ttttagaagc ttcctatatc gatgagggta      2460
     tacctctaga acatgccact ggtctaagca ccaaagaggc aattgaaacc atgatacatc      2520
     gtgctgagca cgaaagtatc aaaacagtac tggaagcagg gacttgcacc actatggatg      2580
     cagcgataag cgcatacata agaacgagta caagagttac cggtgacatc aataaagtga      2640
     tgtactttag aggtaacaga cccaatagag gatacggaaa tgccaataga ggtagtaacc      2700
     gccgtagagg ctttaataac aatagtatta gaggcaacta ccataacggt taccaaaata      2760
     acggttacca aaataacggt taccagaata acggttatca aaaccgctat aatggaaata      2820
     ataaccgtta taatggctat aacagaggcc gttataatgg aaacagaggc cgtaacaaca      2880
     gtcagaacaa ctacaacaga aacaatgcca atgtacgagt aatccaagaa cagggcaact      2940
     cgcaacagcc tttaggtact cagtagaaga agatcgtaga gtatacacca tcaattataa      3000
     tctcaacata ttttctacat tcattcatgc caaaacaggc gtaaaactag tttttctact      3060
     tgatacaggt gcagatatct ctattctcaa agagaactct gacaaatttt ctaatattca      3120
     aataaccaat aaaataaaca ttcaaggcat aggccaacag aaaattcagt ctcgaggaca      3180
     gacttttatt gagatacaga caggtaaata cgttatccca cacgattttc atttagtaga      3240
     taaaaacttt ccaataccgt gtgatggaat aatcggaata gatttcataa aaaaatataa      3300
     ttgccaaatc gatttaaacc aagaagaaga ttggtttata attagaccaa acaatttgaa      3360
     atttccaata tatattccca tagcatacag ctctggtatt aacacaacgt tattaccagc      3420
     aagatcccaa gttgtccgaa gattaatagt atcatcaaaa gatgataaca ttttaattcc      3480
     aaaccaggaa attcaaactg gtatttatgt tgcaaataca atcgcaacat caagtaatac      3540
     atttgtccga attttaaata caaccgattc cgaccaatta gtcaatatgg acactctaaa      3600
     atatgagcca ctttcgaact acaatgtagt tcaggcaaat agtgaacaca gaaataaaac      3660
     tgtcttatct caattaaaga aaaatttccc cgaattgttt aaatcacaat tagaaaatat      3720
     atgcagcgaa tatatagata tatttgcatt agaatcagaa cctataacag ttaataattt      3780
     gtataaacaa cagttgagat taaaagatga tgagccagta tacacgaaaa attatagaag      3840
     tcctcatagt caagtggaag aaatacaagc ccaagttcag aaattaataa aagataaaat      3900
     agttgaacca tcagtttcac agtacaatag ccctttgcta ttagtaccca aaaagtcaag      3960
     cccgaattct gataaaaaga aatggagatt agtaatagac tatcgccaaa ttaataagaa      4020
     acttttagct gacaaatttc cactaccgag aatagatgat attttggacc aacttggtcg      4080
     agcaaaatat ttctcctgcc ttgatttaat gtcaggtttt catcaaatcg aactggatga      4140
     aggctcgaga gatataacat ctttctcaac cagcaatggc tcatatcgtt tcacgcgatt      4200
     gccatttggc ttaaaaatag cgcctaattc attccaaaga atgatgacta tagcattctc      4260
     cggaatagaa ccgtctcaag cattccttta tatggatgac ttaatagtca taggttgttc      4320
     cgaaaaacat atgcttaaaa acctcactga agtttttggt aaatgcaggg aatacaacct      4380
     aaagttacat cctgaaaaat gttcattttt catgcatgaa gtcacatttt tgggacacaa      4440
     atgcacagac aaaggaattt tgccggatga caaaaaatat gatgtcattc agaactaccc      4500
     agttccacat gatgcggaca gcgctagacg ttttgtagca ttttgcaatt actacagacg      4560
     ttttatcaaa aatttcgccg actattcgcg gcacataaca agattatgta aaaagaatgt      4620
     tccattcgag tggacagatg aatgtcaaaa agcattcata catttaaaat ctcagctaat      4680
     taacccaaca ctcttgcagt acccagactt cagcaaagaa ttttgcataa caacagatgc      4740
     aagcaagcaa gcgtgtggcg cagttttaac tcaaaaccat aatggccacc aactcccagt      4800
     tgcttatgca tccagagctt ttacgaaagg tgaaagcaat aagagtacaa cagaacaaga      4860
     gttagcagca attcattggg caataataca tttcagacca tacatttacg gaaaacattt      4920
     cactgtgaaa acagaccata gaccattgac atatttattc tcgatggtga accccagctc      4980
     taaattaact agaataaggc ttgaactaga ggaatataat tttacagtag agtatctaaa      5040
     gggcaaggac aatcatgtag cagatgcgtt atcaagaata accatcaaag agctaaaaga      5100
     tataactgga aatatattaa aagtcactac aagatttcaa agtagacaaa aatcctgcgc      5160
     aggaaaagaa caattggatt tgcaaaagca aaccaaagaa atagcttcag agcccaacgt      5220
     atacgaagtc ataacaaatg acgaggtacg aaaagtagtg acattgcaat tgaatgactc      5280
     gatatgttta tttaaacatg gaaagaaaat tattgcaaga tatgatgttg gtgatcttta      5340
     tactaatgga attcttgatt tagatcaatt tctccaaagg cttgaattgc aggccggtat      5400
     atatgatatc agccaaatca aaatggcacc gtggaaaaaa atctttgaac acgtttcaat      5460
     agataaattt aaaaatatgg gcaataaaat attaaagaat ttaaaagtag cgctacttaa      5520
     cccggtgacc caaataaata atgaaaaaga aaaagaagct atattgtcta cattacatga      5580
     tgatccaata caaggagggc atacaggcat tacaaaaacc ttggccaagg tcaaaagaca      5640
     ttattactgg aaaaatatga gtaaatacat aaaagagtac gtaagaaaat gtcaaaaatg      5700
     ccaaaaagca aaaacaacaa agcacacaaa gactccaatg acgataactg aaacaccaga      5760
     acatgctttc gatagagttg ttgtggacac aattggtcca ctacccaagt cagaaaatgg      5820
     taacgagtac gcagtcactc tcatatgtga tttaaccaag tacttagttg ccataccaat      5880
     agcaaataaa agcgcaaaaa cagtcgcaaa agctatattt gaatctttta ttctaaagta      5940
     cggtccaatg aagacgttca taacggacat gggaacagag tataagaatt caataattac      6000
     tgacctgtgt aaatatttga aaataaaaaa tataacatca acagctcatc accaccagac      6060
     agttggagta gtagaaagaa gtcatagaac tttaaacgag tatatacgat cctacatatc      6120
     gacggacaaa accgattggg acgtatggct tcaatatttc gtatactgct tcaacacgac      6180
     ccaatctatg gtacataatt attgtccata tgaattagtt ttcggtagaa caagtaattt      6240
     accaaaacat tttaataaac tacatagcat agaaccaata tataacatag atgattacgc      6300
     taaggagagt aaatataggt tagaggtagc atatgctcga gcaagaaaac ttcttgaagc      6360
     acacaaagaa aaaaataaag aaaattatga cttaaaagta aaagacatag aattagaagt      6420
     aggagataaa gttttactaa gaaatgaggt aggtcataaa ttagacttta aatatacggg      6480
     gccctataag atagaaagca taggagataa taacaatatt acgctactta ctaataaaaa      6540
     caaaaaacaa atagttcata aagatagatt aaagaaattt cattcatgat tgaatttaaa      6600
     cttatatttt ccttaatcat ttatacaaat tttccataca ctacgtatat ttttatcttt      6660
     gcattataaa atcaactatt gttgttcaaa caaaaacaca aacaaaataa aaataaaaat      6720
     aaaataattt gcatttaata atcaaaataa cttcactagg ttacgttatt tttcaaaagg      6780
     agggagatgt agtatgtgcc tatgcaatat taagaacaat taaataaaat agcatattaa      6840
     cttatggcag cactttgttg ctatgtttat gtttatgttt atgcacgcag ttaggcc         6897
//
ID   FORK_DM     repbase; DNA   ; DRO   ; 1435 BP.
XX
AC   X62679;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.melanogaster forked gene suppressor repeat.
XX
KW   Repetitive sequence; Tandem repeat; DMFORK; FORK_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1435
RA   O'Hare K.;
RT   "Direct Submission.";
RL   Direct submission to Repbase Update (1991)K. O'Hare, Imperial College
RL   of Science, Technology and Medicine, Dept of Biochemisty, London SW7
RL   2AZ, UK.
XX
RN   [2]
RP   1-1435
RA   Tudor M., Mitchelson A., O'Hare K.;
RT   "FORK_DM.";
RL   Unpublished.
XX
RN   [3]
RP   1-1435
RA   Mitchelson A., Simonelig M., Williams C., O'Hare K.;
RT   "Homology with Saccharomyces cerevisiae RNA14 suggests that phenotypic
RT   suppression in Drosophila melanogaster by suppressor of forked occurs
RT   at the level of RNA stability.";
RL   Genes Dev 7, 241-249 (1993).
XX
DR   GenBank; X62679; Positions    8638   10072.
XX
SQ   Sequence 1435 BP; 469 A; 236 C; 265 G; 465 T; 0 others;
     aagggcgctg tcacctcgaa aactttaaaa gctttgaagt taagataatg tatgcatttc        60
     tttccttttt tctgattttc gaaacgtaac gttttaaacg ttttaatcat tcgttaatca       120
     aacagcaatt catataacag aacgttatat gaatttttgt taagtgttct aaatattttg       180
     gtaacacaga caggacgaaa tgaattttct atctattaaa taaattgata tttaaagaaa       240
     gcaaattaat ttagaaatat attgacaatt tccaactaat ttatctctgt tatggaaaat       300
     tagtttagga aaaaagttaa aataacaaaa ggaaccgcta tagtagattt tctccactag       360
     cgccactcaa ctaaggggag aacgagggag aaactttgaa acttgattgt catatccata       420
     aaattgttta gaataacaag agagaatgct atagtcgagt tgcctgaata tcagataccc       480
     gttaacccag atatttttct gcgataccaa aagatgttgg ggaataaaat gagaaaaaat       540
     ttcaacaatt ttcaaaagtg gggcgtgacc ggtttgtcgg cttaagggcg tcacagtggg       600
     tgtggcaaac agtttttttt ttgcacatcg atcggaattt acaagactaa taaagatgtg       660
     aaaaaatatc aatatatttt tcaaaagagt gatcgtggca ttttttcgtg ggcttgtggg       720
     cgttgcaaca tggatcaaca aacttgcgct gcgtctttgt ctctagaatc tgcatgctaa       780
     atctccgcct tccagctttt atagttcctg agatctcgac gttcatacgg acagacggac       840
     atggctatat cgactcggct attgatccgt tatacagtcg gaaacgcttc cttctgcgtg       900
     ttacattcct ttaaacgaat ctacgttact ctacgagtaa cgggtataat aaccaaataa       960
     aaaagtctaa acatatttaa aaaatttggt tggcgttcga atgagatggt ggaggtattt      1020
     tggcaaagcg atacaaagta gcaaaaaatc aaaaaatgca atgaaaaata attataacat      1080
     ttcacaaaag tgtgggtgtg aaccttttgg gcggtttgcc gtcgttaggg tgtgcgaata      1140
     tttcaaaact tgcccacgta ccactatgtg aaattttacc actttttctg cccaaaatga      1200
     ataactccag gacgttgaaa gatattcaga ttgggttaca atatatccgt tctgaaaccg      1260
     ccccttatat ttgttgtagt ttgtaactct agaacggata aagatattta aatttttttg      1320
     ccattatctt ttatgatacc aaaaattgtg gccgtggcac cgcctcttat atttaattaa      1380
     ctaattttgt ataggtattt ctctaatttc gtatgctttt tctagtccaa gcaaa           1435
//
ID   LTRBLD_DM   repbase; DNA   ; DRO   ; 400 BP.
XX
AC   X04671;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Drosophila blood transposon LTR.
XX
KW   Long terminal repeat; retrotransposon; Blood transposon LTR; DMBLDLTR;
KW   LTRBLD_DM.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-400
RA   Bingham M.P., Chapman H.C.;
RT   "Evidence that white-blood is a novel type of temperature-sensitive
RT   mutation resulting from temperature-dependent effects of a transposon
RT   insertion on formation of white transcripts.";
RL   EMBO J 5, 3343-3351 (1986).
XX
DR   GenBank; X04671; Positions     140     539.
XX
SQ   Sequence 400 BP; 110 A; 88 C; 89 G; 113 T; 0 others;
     tgtaataaac caatatatgc caccaattga gaacacgtgt tttccttgca gttgggtgca        60
     gccgtcaggc caccttttta tttcttctta tctcttcgag tagcagaaac ggttctgccc       120
     cgcttaacct ctacagagtg tctaatctta cctaaatact gcgactgcgc cgccgtcgac       180
     agcggcagaa gagcagcgta tatatatatg tataagagag agagagagag agcttatgcg       240
     catatatggc cagcggccag cgtggggatg ctgacttagc ttaaagcata aatgggtgat       300
     cttatatcac gctcacttga gacatttatt tatgcaatgc aactaagtgt tgctgtgtac       360
     ttataggtac agtgtaccct cgatatatgc acatactaca                             400
//
ID   DMLTR5      repbase; DNA   ; DRO   ; 266 BP.
XX
AC   J01078;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.melanogaster transposon-like insert into cuticle protein gene III
DE   (CP3), 5'LTR.
XX
KW   Repetitive sequence; transposon; DMLTR5.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-266
RA   Snyder P.M., Kimbrell D., Hunkapiller M., Hill R., Fristrom J.,
RA   Davidson N.;
RT   "A transposable element that splits the promoter region inactivates a
RT   Drosophila cuticle protein gene.";
RL   Proc. Natl. Acad. Sci. U.S.A 79, 7430-7434 (1982).
XX
DR   GenBank; J01078; Positions      48     313.
XX
SQ   Sequence 266 BP; 74 A; 55 C; 69 G; 68 T; 0 others;
     agttaataat tacagttatc gatttgattt tgaagatcgc aagcgaccgt ttattgcaat        60
     ttatcattcg aaactaaatc tagcgtacaa aatgtttccc taagtcccta gcaatcaagt       120
     gaagtcgtcg gcagtggcgc agcaggcgtc ggccgcggcg cagcgcagaa gtgtcgatgt       180
     cgcgcttaac cgttcgttgg cgttgatggc agcggagact atgtggaacc acaagatgtt       240
     agagaatcaa ttgcagggca ataact                                            266
//
ID   DMLTR3      repbase; DNA   ; DRO   ; 482 BP.
XX
AC   K01952;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.melanogaster gypsy transposon sc1, 5' LTR.
XX
KW   transposon; Long terminal repeat (LTR); DMLTR3.
XX
OS   Drosophila melanogaster
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-482
RA   Freund R., Meselson M.;
RT   "Long terminal repeat nucleotide sequence and specific insertion of
RT   the gypsy transposon.";
RL   Proc. Natl. Acad. Sci. U.S.A 81, 4462-4464 (1984).
XX
DR   GenBank; K01952; Positions      25     506.
XX
SQ   Sequence 482 BP; 126 A; 102 C; 112 G; 142 T; 0 others;
     agttatataa gttccaatag gtccagagtt atgttatttc cagtaggtct agagatcttc        60
     cttctttcgc tgaggttcgt cttagacact gtttatggag attaggttgg agggcttgac       120
     ttcgccccct tagttattat cactagcctt gtggcgatag cgatttgatt gtaaataaga       180
     acaatgatgt ttaacggcaa tgagccggag caagctgtgg tttatttcaa cacaagattt       240
     gaactgagta gaagacaata ttgaaaacta agtttaccct cgagcaatgc atcgcgccgc       300
     cacaagtcgg caagccgact cagcatttct tgcagcgtga agcaacactc ccggtaggaa       360
     gtgtcagctt tccgctgcca gcattcttcg cgtggagcgt tgaacccaat tctgggcgcg       420
     tcagcattgt tcatacaaag ctacttagtt gctacgaagc aatacattgt tagttgttaa       480
     ct                                                                      482
//
