ID   SINE2-1_SP  repbase; DNA   ; SPU   ; 275 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   A family of SINE retrotransposons - a consensus sequence.
XX
KW   SINE2; SINE; Interspersed Repeat; Non-autonomous;
KW   non-LTR retrotransposon; SINE2-1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-275
RA   Kapitonov V.V., Jurka J.;
RT   "SINE2-1_SP, a family of SINE2 retrotransposons in the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 95-95 (2005).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors ~4000 copies of SINE2-1_SP
CC   elements.The consensus sequence represents a major young family of
CC   SINE2-1_SP elements (they are >95% identical to the consensus
CC   sequence). The 70-bp 5' terminus was derived from a Lys tRNA pol III
CC   region. The autonomous non-LTR retrotransposon involved in
CC   proliferation of SINE2-1_SP is not known yet. Given the lack of
CC   target site duplications, 5' truncations, and 3' microsatellites,
CC   this unknown element is expected to be a member of the CR1 clade.
XX
SQ   Sequence 275 BP; 70 A; 54 C; 72 G; 79 T; 0 others;
     taccggagtg ttggctcagt cagtagagcg tccgcctcac aaccgggagg tcgtgggttc        60
     gaaccccggc cgcgtcatac caaaagacgt taaaagatgg gagttgttgc taccttgttt       120
     ggcgttcaac aataagggat agagcaacgt cgatctggcg ctgctcagtg gctgccgggc       180
     tcacgatcaa ttgggcaaaa agaatttccg tttcggttta ataaaatttg gagtggacta       240
     ttaggctatt attattatta ttattattat tatta                                  275
//
ID   CR1-15_SP   repbase; DNA   ; SPU   ; 3585 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-15_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; CR1-15_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-3585
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-15_SP, a family of non-LTR retrotransposons from the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 73-73 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-15_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-15_SP are ~2% divergent form the consensus sequence.
CC   The consensus sequence is incomplete due to 5' truncations of
CC   CR1-15_SP elements upon their retrotranspositions.
CC   CR1-15_SP encodes a 904-aa protein (pos. 576-3287) composed of
CC   the endonuclease and reverse transcriptase domains. The 3' terminus
CC   of CR1-15_SP is composed of the (AATGA) microsatellite.
XX
FT   CDS           576..3287
FT                 /product="CR1-15_SP"
FT                 /translation="MVRNSDPKYNLDGFKFMGNNRVERRGGGVGIYVRDD
FT                 LVYKQRVDLETNVNCMESIFIEIQNSNKYIIIGVVYRPPGESENDFFQSI
FT                 NSFLNIVNKENKYVYLIGDYNIYLLTVNSCSKTNEFLDVYMTKSMYPVIH
FT                 YPTRITDHSISLIDNSFTNNIDDVLSGIILADISDHFPVFCISNSQITLK
FT                 KSQTTMKRDINEISIRKCINLLNDVNWRVDNEDPNVSYNNLLYQFMQLYN
FT                 KCFPLRSIKFKKKRRDKSWFTNKLRKMCNKKYKLYKKSLQNPTDYRKSVY
FT                 KMYRNKLNREIKHVKYEYFKNKFQNVQCDMKETWKLINKAIGNSFKTRDT
FT                 NIEHIQVNNERITDDLCIAQEFNNYFVNIGASLRNNVQNTLIGNNNHMQY
FT                 LESNNVTAFFKPITTKEIIDIVCDLKSKSSTGYDEIDIVIVKRVVHIICY
FT                 PLCRIFNESMNQGIFPEKLKIAKVIPVYKNGSFDTMSNYRPISVLPVFSK
FT                 ILEKCFYNRLIYLLNQCNLLSDSQYGFRAGHSTSSALIDFVFKVSNALDN
FT                 KQIMLGIFLDLSKAFDTLDHTIFLDKLFNYGIRGVLLKWFESYLTNRKQY
FT                 VLFNNIESDFKTIGCGVPQGSILGPLLFLVYMNDITQASQILQCILYADD
FT                 SSLFLSDNDLDRLVIRFNDELQNISQWLYINKLILNVKKTNYIIFTNKNI
FT                 RTDDIEVKINGNVVQRCNSLTFLGIQIDYKMSWHVHIEAICNKLSKVVGI
FT                 LHKLKHFPYKILLMIYNALFLSQLNYCNIVWANSNDYCMNRLYKLQKKAI
FT                 RIISGSHYLAHTKPIFVRFKCFNVFELNDYNIVIFMFLCHKGIIPPSLSN
FT                 KFILNSEIHSYITRQSSHFHIPLIKTSVSKNSIFFKGPILWNELPPNVKA
FT                 SPTLNTFKKRYKQLRFCE"
XX
SQ   Sequence 3585 BP; 1298 A; 446 C; 518 G; 1323 T; 0 others;
     cttcttggac gacagacggt aaagtctttg ccatagtaaa agcctctggc ggaaatgaaa        60
     cgaagaagct catcatctct ctgtcgaacc ttaacactct ttaacaaatc tttttttttt       120
     ttcttggccc agtgagagaa tccagaatcc agatattata tgttatatac atatagcaat       180
     atttataatt atctattttg caattaatat ttaaaccctg ttacgtactt gtatttacat       240
     cgttgaaata ttcttgcatt ttcttttgtt tgtgtatttt actaaatgcc tgatcgtata       300
     aactatcaac attttttaaa caatattgat attaatgcta tctttgaaaa atgatctcct       360
     ataataaata atcaagaatc atataggtat ccacaatatt ttatactcct acatatttta       420
     accaaatgtt aaatgtgcac aatgtagata aatatttaga aaattatctt catgtcttca       480
     tgtaaattgc agaagtataa aaaaaaaatt ctcttgttta gaatcttttt tgcatgttat       540
     tgataatccc ttctgtgcaa tagaataact gaaacatggt acgcaacagc gatcctaaat       600
     ataatttaga tggattcaaa tttatgggta ataatagagt agaacgtcga ggaggaggag       660
     ttggtatata tgttagagat gatttagttt ataaacaaag agtagattta gaaactaatg       720
     taaattgtat ggagtctatt tttattgaaa ttcaaaattc aaataaatat attattattg       780
     gtgttgttta tagacctccg ggtgaatctg aaaatgactt ttttcaatca ataaattcat       840
     ttttaaatat tgtaaataaa gaaaataaat atgtatatct tattggggat tataatattt       900
     atttattgac cgtcaactct tgctctaaaa caaatgaatt tttagatgta tatatgacaa       960
     aatcgatgta tccagtaatt cattacccaa ctcgcatcac tgatcattca atatcactga      1020
     ttgataatag ctttacaaat aacattgatg atgttttatc aggaattata cttgcggata      1080
     taagtgatca ttttcctgta ttttgtatat caaactctca gataacactt aagaaatcac      1140
     agacaactat gaaacgtgat attaatgaga taagcattag aaaatgtatt aatcttttga      1200
     atgatgttaa ttggagagta gataatgaag atccaaatgt gagttataat aatttgttgt      1260
     atcaatttat gcagctatat aataaatgtt ttcctctacg ctccattaaa tttaaaaaga      1320
     aaagaagaga taaatcatgg tttactaata aattacgtaa aatgtgcaat aaaaaatata      1380
     agttgtataa aaaatcctta caaaatccaa ctgactatag aaaaagtgtg tataagatgt      1440
     acagaaataa gttgaaccgt gaaattaaac atgtgaaata tgaatatttc aaaaacaagt      1500
     ttcaaaatgt gcaatgtgac atgaaagaaa cgtggaagtt aataaataaa gctataggaa      1560
     attcatttaa gactcgtgat acaaatattg aacacattca agttaataat gaacgtatta      1620
     cagacgattt atgcattgct caagagttta ataattattt cgttaatata ggtgcttctt      1680
     tgagaaataa tgttcaaaat actttgattg gaaataataa tcatatgcaa tatctagaaa      1740
     gcaataatgt aactgccttt tttaagccta ttacaactaa agaaattata gatattgttt      1800
     gtgacttgaa aagcaaatca agcactggtt atgatgaaat tgatattgtc atcgttaaaa      1860
     gggttgttca cattatatgc tatccgctgt gtcgtatttt taatgaatct atgaatcaag      1920
     gtatttttcc ggaaaagtta aaaatagcaa aagttattcc tgtatataaa aatggatcat      1980
     tcgatacaat gagtaattat cgaccaatat cagtcttgcc agtattttca aaaatcttag      2040
     aaaaatgttt ttataataga ctgatatatt tgttgaacca atgtaattta ttatcggata      2100
     gtcaatatgg ttttagagct ggtcactcca catcctctgc actaattgat tttgttttta      2160
     aagtttcaaa tgccttagat aataaacaaa ttatgttagg aatatttctc gatcttagta      2220
     aggcatttga tacgttggat catacaattt tcttagataa attgttcaat tatggaatac      2280
     gaggtgtttt gttaaaatgg tttgaaagct atttaacaaa ccgaaaacaa tatgttcttt      2340
     ttaataacat tgaatctgat tttaaaacca taggatgtgg agtacctcaa ggctcgatat      2400
     tgggaccctt attatttctt gtatacatga atgatattac tcaggcttca caaatattac      2460
     aatgtatttt gtatgccgat gattcaagtt tatttttgtc tgataacgat ttagatagat      2520
     tagtgatacg atttaatgat gagcttcaaa acatttctca atggttgtat attaataaat      2580
     taatcttaaa tgtaaagaaa actaattata taatttttac aaacaaaaac attagaactg      2640
     atgatattga agtaaaaatt aatggaaatg ttgtacagcg ttgtaattca ttgacatttt      2700
     taggaattca aattgattat aaaatgtcat ggcacgttca tattgaagca atttgtaata      2760
     aactctcgaa agtagttggt attttacaca aattaaaaca tttcccttat aagattttat      2820
     taatgatata caatgcattg tttttatcac aattaaatta ttgcaatatt gtttgggcaa      2880
     attcaaatga ttattgtatg aatagattat ataaattaca aaagaaggca atacgtatta      2940
     tctcaggatc ccattatctt gcccatacaa aacctatttt tgtccgtttt aaatgtttta      3000
     atgtatttga attgaatgac tataatattg ttatatttat gtttttatgt cataaaggta      3060
     ttattcctcc tagtctatca aacaaattta ttttgaattc tgaaatacat tcatatataa      3120
     ctagacaatc atctcatttt catataccac ttatcaaaac ttctgtctct aaaaattcaa      3180
     ttttctttaa aggaccaatt ttatggaatg agttacctcc taatgttaaa gcaagcccaa      3240
     ctctgaatac atttaaaaag agatacaaac aattacgttt ttgtgaatag tattttatta      3300
     gtttttatat atatgcaatc aggtgttaga tgttaggtgt tagttgttag gtgtaaggtg      3360
     ttaagtgtta taggttaaaa ttctttatta tgtcgcaagg gaccagcacc acacaagact      3420
     taattgttct ttcttgctgg ttcctcattc gtatatatat ttgtatttta tgtttatctt      3480
     tcgttatgtt atttgtatgt tctttactta tctgtaaata tcaatgttat aatcatgtat      3540
     gttttttata tgacgaatga aataaaatga aatgaaatga aatga                      3585
//
ID   DNA5-1_SP   repbase; DNA   ; SPU   ; 177 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus sequence.
XX
KW   DNA5-1_SP; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-177
RA   Kapitonov V.V., Jurka J.;
RT   "DNA5-1_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 221-221 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome contains several hundred copies of DNA5-1_SP
CC   elements that are ~98% identical to their consensus sequence.
CC   These elements are characterized by 5-bp target site
CC   duplications and 17-bp terminal inverted repeats.
CC   Classification is unknown.
XX
SQ   Sequence 177 BP; 65 A; 28 C; 29 G; 55 T; 0 others;
     cagggaataa ttttcctcaa attttttgat tagcaatttc agccgatgga taaatatttc        60
     aaatgaaatt ctgtacattt ctatggaaga aaactgctac acaaaagata ttttgtatag       120
     cagtcatgca aaaatgcata gcaaattgcg atgcgatacc aggaaaatta ttccctg          177
//
ID   CR1-10_SP   repbase; DNA   ; SPU   ; 3554 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-10_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; CR1-10_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-3554
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-10_SP non-LTR retrotransposon from the sea urchin genome.";
RL   Repbase Reports 5(4), 68-68 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-10_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-10_SP are ~3% divergent form the consensus sequence.
CC   The consensus sequence is incomplete due to 5' truncations of
CC   CR1-10_SP elements upon their retrotranspositions.
CC   CR1-10_SP encodes a 879-aa protein (pos. 1-2637) composed of
CC   the endonuclease and reverse transcriptase domains. The 3' terminus
CC   of CR1-10_SP is composed of the (TCAAA) microsatellite.
XX
FT   CDS           1..2637
FT                 /product="CR1-10_SP"
FT                 /translation="NFDIIPQFNYMTDALESVFIEIKLPQKKNIIAGVVY
FT                 RPPNSNYEEFVTSLNTILSSKKLQNKNCFILGDFNINLLNADHNPQCQNF
FT                 LDTMLTQSFLPLINKPTRVTDSSASLIDNIYSNISMNSCSGIIIADISDH
FT                 FPVFSFLPILDTTNSSHNQSTHFRKHSEDNMNRLKHSLSLMDWLDVLNKS
FT                 DVNEAFELFLRIFTHCYDRDIPLQSRSARASYKKIPHAPWITMLLLRCIN
FT                 RKNRLFYKYKATPTDHNKQKYINYRNTLTTTLRLAKKEYFFNQFEVHKKD
FT                 MTNTWKLINTALNKNNIKSPVQEINTGVSVTQDPLEIAENLNNYFTNIGP
FT                 NLASKIPNSRRPFHSFLKDPNPQSIFLVPVQETEVLDIINNLKNKKSAGY
FT                 DGISNSLLRHVSEHIAKPLTYIFNLSLVCGTFPSKMKIAKVVPVFKKGDK
FT                 REQGNYRPISLLTPFSKIMEKIVYTRVLKFFDDCDLFSNSQFGFRKKHTT
FT                 THAMLLFIDKVAKAIDNFSHTVGIFLDLSKAFDTVNHEILLYKLSHYGVR
FT                 GRALEWFRNYLSNRTQFVSIDNSVSTSKALQCGVPQGSLLGPLLFLIYIN
FT                 DFKNSSDILSFILFADDSNIFYSHRDPHTLLDTINKELHHVNDWIQANKL
FT                 SLNVGKTNFMLFSNTVTQLPGDILFNNTKLVCVDCTKFLGLSIDNKLTWK
FT                 KHIDNMCKILSRNIGVINKLKFCLPSRILLTLYSTLILPYLNYGILAWGN
FT                 ARKIHTNRIFLLQKRVVRIINNETFFSHTEHLFVENKILNVHDLFSFHLG
FT                 TFMFQLTSKQVPSALTKLFTTNAHIHTYPTRRRNQYHLPLTRTVFSQKTI
FT                 VYTGPMYWNTLDASLQQHSSIFCFKKYLKLTLLKSHSAPAMQP"
XX
SQ   Sequence 3554 BP; 1110 A; 768 C; 520 G; 1156 T; 0 others;
     aactttgata taattccgca atttaattat atgacagatg ctctcgagtc cgtctttatt        60
     gaaattaaat taccccaaaa aaagaacatt attgctggag ttgtttacag acctcccaac       120
     tcaaattacg aagaatttgt aacatccttg aatactatac tttcttccaa aaaacttcaa       180
     aataaaaatt gttttatttt gggagatttt aatataaacc tgctgaatgc agaccataat       240
     ccgcaatgcc aaaattttct cgacacaatg ttaacgcaat cattcctgcc tctcattaac       300
     aaacctacac gtgttactga ctcttctgcc tcactcatcg ataacatcta ctcaaatata       360
     tcaatgaact cttgttctgg tatcataata gctgatatca gcgaccattt tcctgttttt       420
     tctttcctac ccattttaga caccacgaat tcttcacaca atcaaagcac acattttcgc       480
     aaacactccg aagataatat gaacaggctc aagcacagtc taagtttgat ggattggcta       540
     gacgtattaa ataaaagtga tgtaaatgag gcttttgaat tatttcttcg catattcact       600
     cattgttatg acagagatat ccctttacaa agtcgctcag cacgtgctag ctacaaaaaa       660
     atcccgcacg ctccatggat tactatgctc cttttacgct gtataaatcg gaaaaatcga       720
     ctcttctata aatataaagc aactccaacg gatcacaaca aacaaaaata catcaattat       780
     aggaacactt taacaaccac tctccgtctt gccaaaaaag aatacttctt taatcaattt       840
     gaagtccaca aaaaagacat gactaacaca tggaaactga taaacactgc tctaaacaaa       900
     aataacatca aatctccagt ccaagaaatt aacactggtg tctctgttac tcaagatcct       960
     ttggaaattg cggaaaatct gaacaattac tttacaaaca ttggcccaaa ccttgccagt      1020
     aaaattccca attcaaggag accttttcat tccttcttaa aggaccctaa cccacaatct      1080
     atattcttag ttccagtgca agagacagaa gtattggata taattaataa ccttaaaaac      1140
     aaaaaaagtg ctggatatga tggtatatca aatagtcttt taagacatgt aagtgaacac      1200
     attgccaaac ctttaacata tatatttaat ttatcactag tttgtggcac tttcccttca      1260
     aaaatgaaaa tagctaaagt tgttccagtt tttaaaaaag gtgataaacg agaacaaggt      1320
     aattatagac caatatcttt attaaccccc ttttcaaaaa taatggaaaa gattgtctat      1380
     acccgtgtgt taaaattctt tgacgactgt gatctgttta gtaattcaca atttggtttt      1440
     cgtaaaaaac atacgacaac acatgctatg ctcttattta tagacaaagt cgctaaagca      1500
     atagataatt tctcccatac agttggaatc ttcctggacc tctccaaggc cttcgacacg      1560
     gtcaatcatg aaatacttct ctacaagcta tcacactacg gtgtacgagg cagggccttg      1620
     gagtggttca ggaactacct ttcaaaccga actcagtttg tttccattga taattctgta      1680
     tcaacctcaa aagcgttaca gtgtggggtc cctcaaggtt ctctccttgg tccccttctt      1740
     ttccttatat acataaatga tttcaaaaat tcctctgata tcttatcctt tatccttttt      1800
     gccgatgact ctaacatttt ctattcacat cgtgaccctc acactctctt agatactata      1860
     aataaagaat tacatcatgt gaacgactgg atccaagcaa ataaattatc actcaatgta      1920
     gggaaaacta atttcatgct ttttagtaac acagttaccc aattacctgg cgatatcctt      1980
     tttaataata caaaattagt ttgtgttgat tgcacgaaat tccttgggtt atccatagat      2040
     aataaattaa catggaaaaa acatattgat aatatgtgta aaattttatc tcgaaacata      2100
     ggggtgatca acaaactaaa attttgcttg ccttcccgta ttttattgac cctttactct      2160
     accctcattc ttccctattt aaattacggt attcttgcgt ggggaaacgc acgaaaaatc      2220
     catacaaaca gaattttctt attacaaaaa cgagtagtga gaataataaa taatgaaaca      2280
     ttcttttccc atacagaaca tttatttgtt gaaaacaaaa tccttaacgt acacgactta      2340
     ttttcattcc acctaggaac attcatgttt caactaacat ccaaacaagt acccagcgct      2400
     cttacaaaat tatttacaac taatgcacat atacacacat accctaccag acgtcgtaac      2460
     caatatcatc ttcctttaac ccgaacagtc ttctcacaaa aaacaattgt atatactgga      2520
     ccaatgtact ggaatacgct tgatgcctcc ctacaacaac actcaagtat cttttgcttc      2580
     aagaaatacc ttaagctcac tctgttgaag tcacactcag ctccagctat gcaaccctaa      2640
     gtcgttaacc tgcgcacaat aaataaatta tgcacaaaca aactttagta cgcaaattta      2700
     tcactaagca cggaagtgct ttctttttta tctggtcttc ttactcttgc cttccgactc      2760
     ctcccagtga atttctttct ttcctctcta aagaaataca aatagactac ctattacgtg      2820
     gcactactct taccttccca tccttctcat ccttttttgt gtttcatcac atgctttttt      2880
     tttcttttct tttcttttct tgtcatctat tttatttttc tatcgttcat tatacgcttg      2940
     tacaaaatac tattggacca tcttcggcgt gttgtccggt tttcgcgtgt ttgttcccgg      3000
     agagtctccg gacgcgcggg ttcggctgcc tatgccggat ctttgtgttt cttttgtcgg      3060
     ggcctgttcg gtgcgcaata ttttatgttg ctcgttgcta ggtcggacag accttgagct      3120
     tgctcgacct ggcaacggca gactgttgta cgctgaatgg gccttggcgg gggagacccg      3180
     gggatctggc gcgggcgggt gggttcgcgc gtctctggtc tctctgggag cggacatgtg      3240
     cagaatttga tgcacgttgt tgatggtcca ttatttaatt tatactggga atctcgctca      3300
     acaagcctag cttttctgag attccctttt ttcccctctc agttaaatca agcaatttaa      3360
     aatatgttgt ctaattctca aacataaatg tactttgtaa acttatttga ttacgaacat      3420
     acttgtcagt atttcgttac ttgtataatt catttgttct attatatatt gtattactgt      3480
     atggtttata tatgtcattt aatttgtgga tatttgagtg gaaaataaat caaatcaaat      3540
     caaatcaaat caaa                                                        3554
//
ID   SP2109AA    repbase; DNA   ; SPU   ; 273 BP.
XX
AC   K01645;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus 2109A repeat element.
XX
KW   2109A repetitive sequence; SP2109AA; Repetitive sequence.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-273
RA   Posakony W.J., Flytzanis N.C., Britten J.R., Davidson H.E.;
RT   "Interspersed sequence organization and developmental representation
RT   of cloned poly(A) RNAs from sea urchin eggs.";
RL   J. Mol. Biol 167, 361-389 (1983).
XX
DR   GenBank; K01645; Positions       1     273.
XX
SQ   Sequence 273 BP; 74 A; 51 C; 54 G; 94 T; 0 others;
     ggatcaggat ttgtaactct cctacatcag ctctatgttg ccaacctctc gatgaagcta        60
     ttgctgcaaa ctctttgagt gtagcattcc aactttgaaa caggggggca tttcacaaaa       120
     cttatcatca gtgacaaatg acagtttttt ttataagcta ccggtactga aatccttgct       180
     tatgactggt tatcagcaga tttgtttctg atttttgtca tttttcattg aaaaaaaggc       240
     tttgtgaaac gggtccttgg tttactaaag gag                                    273
//
ID   Mariner-N1_SP repbase; DNA   ; SPU   ; 569 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous Mariner/Tc1 transposon - a consensus sequence.
XX
KW   Mariner-N1_SP; Mariner/Tc1; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-569
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N1_SP, a family of nonautonomous transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 242-242 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors about 1000 copies of Mariner-N1_SP that are
CC   ~90% identical to the consensus sequence. Putative
CC   classification: Mariner/Tc1 superfamily (27-bp terminal
CC   inverted repeats, 2-bp target site duplications). Additionally
CC   to its normal node of transposition, a copy of Mariner-N1_SP
CC   (pos. 86-522) was recruited by hAT-N1_SP transposon (~100
CC   copies).
XX
SQ   Sequence 569 BP; 160 A; 123 C; 95 G; 187 T; 4 others;
     ccgtaaatct ccgtgtataa ggcgcacttt tttgccgccg aaaaaaattg aaagtcgggg        60
     gtgcgtctta tacacaggta cagaattttt taattttttt tttakttttt ttttwagttt       120
     cgatttatgc ccctccacct ggcgctatgc ctggcaatgt ctcccagctc agtaatcggt       180
     gtgttgactc accactcgga aactacaaca acactcaaat ttgtctgtca tcttggtttg       240
     aaagtaatct ttctaataga tctcaatatg tagtttataa taataattcc tcaaattttt       300
     cttctattac amatggygta ccacaaggtt ctatcctagg acctaggtac tctactgttt       360
     ttaatttaca ttaatgatct tacacattct tctaaaaacg acattgttac tattatttgt       420
     gacaagttca caagcacaaa tcagcgcctt caactgcacc tcgatgttaa atgaaggtcc       480
     ttccccgcgt gggttttcgg caacaaaaca acaacaaaaa aaggggtgcg ccttatacac       540
     aggtgcgcct tatacacaga gatttacgg                                         569
//
ID   CR1-8_SP    repbase; DNA   ; SPU   ; 3486 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-8_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; CR1-8_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-3486
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-8_SP, a family of non-LTR retrotransposons from the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 80-80 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-8_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-8_SP are ~3% divergent from the consensus sequence.
CC   The consensus sequence is incomplete due to 5' truncations of
CC   CR1-8_SP elements upon their retrotranspositions. CR1-8_SP encodes
CC   a protein (pos. 1-2800) composed of the reverse transcriptase domains.
CC   Due to the small number of copies, the coding region is not well
CC   reconstructed (frameshift/short deletion around position 420).
CC   The 3' terminus of CR1-8_SP is composed of the (CTCAA) microsatellite.
XX
SQ   Sequence 3486 BP; 1061 A; 637 C; 491 G; 1297 T; 0 others;
     aatgtcagaa gtctcggtaa aaattttgac cagtttcaac tactcctgga caaaattaaa        60
     tatgattgtt cattcattgg tatttgtgaa acctggatta aatcaaactc atcactattt       120
     tttattgatg gctatactct tgtcactaat aacaggaaaa acaaaactgg cggcggagtt       180
     ggcctgtata tttcaaatga ttatgaatcc aaaatactta atgacttaac catcatgtct       240
     gatatacttg aaagcatatt tatagagatc gaagttcctg gtaagaaaca tatcgttatt       300
     ggtgaaatct acaggccacc tcaaagtaat ttcattgaat ttcttgaaat tgttcagact       360
     attttatcat cacctcatat tgccaacaag atgtgcttta taatgggcga ctttattaaa       420
     tgccaacttg ttatcgtgtg actcaaattc tcagtatttg gatttcttaa atttgctttt       480
     atcccattct tttcttcccc aaatcaccaa accaacaaga atatcaaata gtagtcacac       540
     tttgatcgat aatattttta caaatgtatc ttctaatatt gaatctggta tagtgctttc       600
     cgacttgagt gatcacttcc cagtgtttgc tttcattccc aattttcatt cacagtgtaa       660
     ttccagtaag caggtgtcgg gttttcgtaa tttgtcccat gtgaacatcg aacgatttcg       720
     acaaagtctt atctctactg attggtctga aatatataat tgtcaaaatg taaacgattg       780
     ttataacagg ttccttgaaa ttttcgatga tttatacaac ctgtatattc cgatctgtat       840
     tccattgcgt tctaattaca aaaaagtgcc cagactgccc tgggtcacta aatctctttt       900
     gaagtgcatt aaccgtaaaa acaaattgtt ctataaatat aaagtaaaag aaactgaggg       960
     ctctaaactg aaatacaata gatatcgtaa tattcttaca tctttattga gacaggctaa      1020
     aaaagattat tattcttcac aattcaattt atataaaaat gatgctaaaa atacgtggaa      1080
     gattattaat aatgtcctga aaagtaaaac taagactata cacattgaga gtgtgatcga      1140
     tgatggtgtg aagattcaag actctcgtga tttagctgaa tcttttaatt cttttttttt      1200
     tgttcaaata gggccaaagc tagctgagaa aatacccaca tctggtagac cctttcattc      1260
     atttctcaca aattccaacc aaagttcatt atttttaact ccaacagact gttctgaatt      1320
     aattagtatt gtcaataatt ttaagaataa aaaaagtgca ggtgctgatg gcataactaa      1380
     ttttctttta aaaaaggtaa tcggtgtgat tgcccatcct cttgctcata ttttaaattt      1440
     atctttacta aatggtattg tacctcaaaa aatgaaaatt gctaaggtgg ttcctatatt      1500
     taaatctggt agtaaagatg acttgggtaa ttatcgccca atttccttgc tttcgtcgtt      1560
     ttcaaaaatc ttagaaaagc ttatatatac tcgtaccttt aaattcataa ctaaatttaa      1620
     tatattatcg tcatcacaat atggtttccg acgtaaacac tccacaactc atgcattact      1680
     catgttcatt aataagattg catgtgctat tgataatatg tcccatacta ttggtatttt      1740
     cctggacttc tccaaggcct tcgacacagt taaccatgac attcttttat ataaactatc      1800
     ccattatggg atcagaggga aggccttgga gtggttcagg aattacctca cagacagaat      1860
     gcaatatgtt aatttaaatg atcatgactc atgtctacga catatcactt gtggtgtccc      1920
     gcaaggatcc ctccttggtc cgctcttgtt tctactttac attaatgatt tccaaacttc      1980
     ctcccccatt ttgtcattca tactttttgc cgatgattcc aatattttct ttactcatcc      2040
     aaatcccaat attattgctg acgttgtaaa caatgaatta ctatctgttt tggagtggat      2100
     taatgccaat aaattatctc ttaatgtgac taaaacgaac tatatgcttt tcagtaactc      2160
     cataacatca ctacctggta acatttccat taatgacaca aacattttat ttgttgaaca      2220
     cacaaaattt cttggtcttg ttatagactg taaacttaat tggaaaatgc acgttggaaa      2280
     tttatgtaaa cttttatcac gaaatactgg cgtcatcaac agacttaaac acttctttcc      2340
     tcttgatgtc ctgttgaatc tatactccac cttaatttcc ccttatttaa attacggtat      2400
     tctagcttgg ggcaactgct ccaagactca actgcatagt ttattggtca ttcaaaaaag      2460
     agccctgaga ataattcaca atgttggttt ccggtcacat tcaaacatct tatttttcaa      2520
     caataacctt ttacatgtgt ctgatatatt tctctataat ttgggtattt tcatgtatca      2580
     acttacaaca aatgaattgc ctgattctat tgcttctctt ttcactaaga acttggatat      2640
     tcattcatac cctaccagga aaaggaatga ttttcacatc ccccgtttac gcacttcatt      2700
     ttctcaaaaa acaattgtgt atactggtcc gtctttttgg aacaatcttc atcctgattt      2760
     acttcactct tcttctattc atcaatttaa atataaactc aagttacatt tgttgaatgc      2820
     atacaataat aatgatgatt agacatttca tgtataatgt tcttttttct tataacgtgt      2880
     accattttac aattcatttt acaattcatt tgcaatttta ggcgttcttt tgcctgtgtg      2940
     acataagtta aattttttca ggaaaggaat gaataattca tgatttctat tgttcggttt      3000
     ttgtaaacgt tcaggtggtg caaacatgtg tggtagagat aggtgcatac tctgctattt      3060
     attggctcgt tactcctctt cgttttaatg tatttctttt tctttttttt tccccttttt      3120
     tctgtattgt attgtattga actcgcaaac aattatttgt caaattactg ccgtcttaat      3180
     tttaattgtg tacctctctc tacagtaaac attttctgtc cctgttattt ttcaagtctc      3240
     ccaggaacct attctttaca agctctgctt ttctataggt tcctgcacat ttcacagttt      3300
     gtacttttgt ctgggttttc ctttaaatga tattagttgt caaacaaatg tgatgattac      3360
     cttgtcaatt aatataatca ttttttttaa attatgaaac aatatgtatt ttatgtatat      3420
     tttgttatct gtattatttc tgcatgtgaa atgtgaaatc aataaactca actcaactca      3480
     actcaa                                                                 3486
//
ID   Transib1_SP repbase; DNA   ; SPU   ; 4132 BP.
XX
AC   Contig7839;
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   12-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib1_SP is an autonomous DNA transposon.
XX
KW   Transib; DNA transposon; Interspersed Repeat; transposase.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-4132
RA   Kapitonov V.V., Jurka J.;
RT   "Transib1_SP, an autonomous DNA transposon from sea urchin.";
RL   Repbase Update (2005).
XX
DR   Spur20030922/BCM; Contig7839; Positions       1    4132.
XX
CC   Transib1_SP is an autonomous DNA transposon that belongs to the
CC   Transib superfamily. The sequenced portion of the genome harbors
CC   only one copy, which is flanked by the CGGCG target site duplication
CC   and is characterized by 38-bp terminal inverted repeats (2
CC   mismatches).
CC   Transib1_SP encodes the 676-aa Transib1_SPp transposase
CC   (pos. 833-1703, 2151-3310).
XX
FT   CDS           join(833..1703,2151..3307)
FT                 /product="Transib1_SPp"
FT                 /translation="MWVTSQTSHKKLLKSLSKTIGRFLYRMREKWNKCGR
FT                 RQEYFMKENEDWLNQTLTFNTEVETFLAQQNSTDTGTETEPTSDLPGTSQ
FT                 GASNVGRPAKNWDTLSDRSKKRKAHHLLEDREPEELLYAASQGVYKKNSS
FT                 LKYVLKFAMLTPSRPAKIRKLISEKKKEPLKFSSEEALSLLVETGMTKQA
FT                 YQTTRLAAKGKNADIYPPYNEIREAKEKCYPNDISVTEDSGKVPLQSLLD
FT                 HTALRIIQEQKDTITQVIENLEEDEQFNCELVCKWGFDQTAHQATVNTKQ
FT                 KSTAGTLDDSSIFCTTLVPLQLKVKDSILWQNPVPSSSRFCRPIHLQFKK
FT                 ETTELSQEEYRSVQDEIKKLQPMNVSLDIDYELAADLNRNYNIQINYELH
FT                 FTMMVDQKVVNALTETKSSMRCYVCGATPKQFNDIEKLPSASNEEAYSYG
FT                 LSPLHKWIRCFEMCIHIAYRITIKKWRVSTENDKAVVAAQKKKIHDRFKE
FT                 EMGLKVDEPKQGSGNTNDGNTARRAFQEEDTFADICGLDLNLVHRIHMIL
FT                 VAISCKSSLNPVRFGDYCRRTAEIYVQLYPWYKMPVSVHVLLLHGSTILA
FT                 CSVLPIGMMSEEAQEARNKDNKVYRRKFARKTSRVDNMSDVFHRLMVTGD
FT                 VAISLLSLKTPRPRTLPREVQEMLKDFRVIQDNDSPDSDS"
XX
SQ   Sequence 4132 BP; 1404 A; 771 C; 774 G; 1183 T; 0 others;
     cacagtgggc cagaatcgcc taaaagtgtg ccaaaattca aaattggcga atgtgaattt        60
     ttatattttt ttcattcgct ttgggaagaa aacattctaa agaatatttt tctacccata       120
     ttttaatatt tagcgagttt taaaagtgtc attatacccc gaacatggga aaatctatat       180
     gttgctctaa aaatgataaa aaggtaactt tacactaggt gttgagaatg tataaaggga       240
     aaagcaatca acttgatact gcgtgcactt cttgcctatt ggtaacccaa ttagaaaata       300
     caatgaccaa atttttggaa gcttcctttt gggaaaaatg agcatttaat ttcacacaaa       360
     aaggggaaaa atgcaatatc tatataaaag tagcatatta attaggattc cggccgattc       420
     ccgcagtaat gttaatctca aaatgtctgc ctaagctttc catgtatggt atttcttttt       480
     gccagaattt gctacactgc atgtgcaggc gcttttcctc cccacgtcca tctattatta       540
     ttaggcataa tcggtacaat tttgtactgt ttacgcacag tcgattcaac tctcgtccgc       600
     gtaaccatgg caacggttac gtgagtgtag agcgtgtagc gtagtgtata ttgctttcac       660
     acgttgatgc aattcggaat catatatgat atcattctag gagaacttgg attgaaataa       720
     acgatggcgg tattaagaag acagcttttt catgctgtgc attcagctgg cttcatttca       780
     gacatcaaac tggcatccaa aacatccatt gatgcattat gtgcatatca taatgtgggt       840
     aacaagtcaa acatcccaca aaaaacttct caagagtttg tcaaagacta ttggacgctt       900
     tctgtatcgt atgcgagaga aatggaacaa gtgtggtcgt cgccaggaat atttcatgaa       960
     agaaaacgag gactggctta atcagacatt gacattcaat actgaagtag aaacatttct      1020
     tgcacagcaa aacagcacag ataccgggac agaaacagag ccaacttcag acttgccagg      1080
     cacgtcacag ggcgcatcca atgtgggacg tccagctaag aattgggaca ctctctcaga      1140
     tcgttctaaa aaaagaaaag cacaccacct tctagaagac agggaaccag aggaacttct      1200
     atatgcggca tctcaaggcg tgtataagaa aaattcaagt ttgaaatatg tgttgaaatt      1260
     cgcaatgcta acaccatcaa gaccagctaa aataagaaaa ctgatatcag aaaaaaagaa      1320
     agaaccatta aaattctcaa gtgaagaagc tttgtcactt ttagttgaaa caggaatgac      1380
     aaaacaggca taccaaacaa ccagacttgc tgcaaaaggt aaaaatgctg atatttatcc      1440
     accgtataac gagattaggg aagctaagga aaaatgttat cccaatgaca tctcagtcac      1500
     ggaagactct gggaaagtac ccctacaaag cctcttagac cacactgcac ttcggataat      1560
     tcaggagcag aaggacacta tcacgcaagt cattgaaaat ttagaagaag atgaacagtt      1620
     caattgtgaa ttggtgtgca aatggggctt tgaccagacg gctcatcagg ccacagtaaa      1680
     tactaaacag aagtctactg caggtacgtg ttttctcctt tccaccctac agagctaaat      1740
     gcgtttattc ttttttttat cagagagacc aacatcatca ttaaagctga ttcatgaaac      1800
     aaataaaaaa aaaaaaagga catatcttaa gtaaaataaa aacacatggt tttaatgctc      1860
     caacaattaa acaagcttag gtttccatta atatttattt cctgataatt atatatatat      1920
     ttcttatgag caatgatatt ttatgttttg ataaaataaa taatcaaagc ctccaaatgt      1980
     tgggataata tagatacatt tggacgtata tagatacatt tggacgtaca tgatgtatga      2040
     gtataacatt ttaagtttca ttctgatgaa attttaaagt aattttgaat tcatgtttgc      2100
     tgtacacgat tatgcatttc tgacataata attttatttt tctactgcag gtactttgga      2160
     tgacagcagc atattctgca ctactctagt tccgctgcaa ttgaaggtaa aagacagtat      2220
     tttgtggcaa aatccggttc cttcttcgtc aagattttgc cgacccattc atcttcaatt      2280
     caagaaagaa acaactgaac tctctcagga agagtataga tctgttcaag atgaaatcaa      2340
     gaaattgcaa cctatgaacg tatctttgga cattgattat gagctggcag cagatctaaa      2400
     taggaactac aacatacaga ttaactatga attgcacttc accatgatgg tagatcagaa      2460
     agtcgtgaat gctctgacag aaaccaagtc atctatgcga tgctatgtct gtggggctac      2520
     tcccaaacag ttcaatgaca tagagaaact tccctccgcg tcaaatgagg aagcttatag      2580
     ctatggactc tcacctctac ataaatggat cagatgtttt gagatgtgta ttcacattgc      2640
     ttacagaatt acgattaaaa agtggcgtgt ttcaactgaa aatgacaaag ctgtcgtcgc      2700
     tgctcagaag aagaaaatac acgatcgctt caaagaggaa atgggtctta aagtagatga      2760
     accgaaacaa ggatcgggaa atacaaacga tgggaacact gcacgcagag cattccaaga      2820
     ggaggacacc tttgctgaca tttgcgggtt agatttgaac ttagtacata ggattcacat      2880
     gatcttagta gcaatttctt gcaaatcctc tctaaatcca gtacgatttg gagactattg      2940
     tcgcagaaca gcagaaatct atgtacaact ctacccatgg tataaaatgc ctgtgagtgt      3000
     gcatgtactg ctgcttcacg gctctaccat tcttgcttgt tcagttctac cgatcgggat      3060
     gatgagcgaa gaagctcaag aagccagaaa caaggacaac aaggtataca gaaggaaatt      3120
     tgcaagaaag acatcaagag tagacaatat gagtgacgtg ttccaccgtc ttatggttac      3180
     aggcgatgtt gccatcagtc ttttatcact taaaactcca cggccaagaa ccctgccacg      3240
     tgaagtccaa gagatgctga aagactttcg ggtcattcaa gacaatgatt ctccagacag      3300
     tgactcgtaa tgagaagcaa aaggacccat acatagagat atggcaaaaa cgttataaaa      3360
     cgttcaaggg tatttcatat ttttaaatca taatcattta tttgattata ttccaaatcc      3420
     ctttgaacat cttctgaaat caatcgatgt ctcattcttt aaattcatat ggaaagggaa      3480
     acccgataca ataaacagaa aacaagtagt ttgtaaatac gaaaatagtg gactaaaaat      3540
     agttgatgcc ggacaatttt atagagagaa atttaaaaat gctccaattg tgcgtcttag      3600
     gtccagaaac ccctgaaaag tttccctagt cagtgtcata tgaatctgtt tatgtgttac      3660
     aatgcatgtt ggccttttcc aatcagaaaa ctgtatttta atgacgtgag agaaatttga      3720
     aaatgctcca atagtgtttc ttaggtccag aaacccctta taagttccac taatcagtgt      3780
     aatatgaatc tgtctatgcg ttacaatgaa tatttgcctt gtccaatcag aaaacagtat      3840
     tttaatgacg tcagagaaat ttgaaaatgc tccaattgtg tttttttagg tccagaaacc      3900
     ccttataagt tccactaatc agtgtaatat gaatttgtct atgcgttaca atgaatattt      3960
     gccttgtcca atcagaaaac agtattttga tgacgtcaca cggatttgaa aatactccca      4020
     tcgaattcta ttggtctgaa aaccccttac atactttaac caggaacttc attaaccttc      4080
     ttcaatgaga aattaatttt ggcacacttt gaggcggttc tggcccactg tg              4132
//
ID   SINE2-2_SP  repbase; DNA   ; SPU   ; 251 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   A family of SINE retrotransposons - a consensus sequence.
XX
KW   SINE2; SINE; Interspersed Repeat; Non-autonomous;
KW   non-LTR retrotransposon; SINE2-2_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-251
RA   Kapitonov V.V., Jurka J.;
RT   "SINE2-2_SP, a family of SINE2 retrotransposons in the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 96-96 (2005).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors ~2000 copies of SINE2-2_SP
CC   elements.The consensus sequence represents a major young family of
CC   SINE2-2_SP elements (they are >95% identical to the consensus
CC   sequence). The 70-bp 5' terminus was derived from a Lys tRNA pol III
CC   region. The 131-bp 5' terminal portions of SINE2-2_SP and
CC   SINE2-1_SP are 77% identical to each other. The autonomous non-LTR
CC   retrotransposon involved in proliferation of SINE2-2_SP is not known
CC   yet. Given the lack of target site duplications and 3' microsatellites
CC   in SINE2-2_SP, the unknown autonomous element is expected to be a
CC   member of the CR1 clade.
XX
SQ   Sequence 251 BP; 67 A; 51 C; 66 G; 67 T; 0 others;
     taccgggcat ggtggctcag tggttagagc gcccgcctca tgaacgggag gtcgtgggtt        60
     cgaaccccgg ccgagtcata ccaaagactt ataacaatgg gaccttctgc cttctagcta       120
     ggcgctcagc atattagatt ggagaagggt agtaataaca tattatgtta tgcagggccc       180
     gctggaagag cagtttcata actgaagtgg ctaccctggg taaataaaac gttattatta       240
     ttattattat t                                                            251
//
ID   CR1-7_SP    repbase; DNA   ; SPU   ; 2856 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-7_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; CR1-7_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-2856
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-7_SP non-LTR retrotransposon from the sea urchin genome.";
RL   Repbase Reports 5(4), 79-79 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-7_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-7_SP are ~2% divergent form the consensus sequence.
CC   The consensus sequence is incomplete due to 5' truncations of
CC   CR1-7_SP elements upon their retrotranspositions.
CC   CR1-7_SP encodes a 810-aa protein (pos. 1-2430) composed of
CC   the reverse transcriptase domains. The 3' terminus
CC   of CR1-7_SP is composed of the (ACTGAA) microsatellite.
XX
FT   CDS           1..2430
FT                 /product="CR1-7_SP"
FT                 /translation="DFNLNLLQCDENTSCQDFLDLMLSKSFAPTITKPTR
FT                 ITEYSATLIDNIFVSGTPIVKSGVIVTDISDHFPIYTVISNVISHSNPNT
FT                 NKCSGIRYLSEPDLRRLKEALTITDWYAVYNCDDVDTSFDNFMEILMLTL
FT                 NSFPTRQQNCSNYKKHPRLAWISKSLLKSINRKNTLYYKYKKNHTVKSKL
FT                 KYSRYRNILTTSLRLAKKNYFTKQFNVNKGDIKNTWRVINNALKSRRVST
FT                 HISNIMINENRIQDPLVIAEEFNNYFANIGPNLAQNIPVSDLHFQYFLET
FT                 KNTNSMFCTPILEHEVIDIVKNMKTKKSAGNDGITNFILKEIIGEIVSPL
FT                 THILNLSIMNGIVPKKMKIAKVIPIFKKGNAQDIGNYRPISLLTSFSKIL
FT                 EKLMYSRTMQFLIDFDILSDTQFGFRQKHSTTHALLMFLDKVAHAIDDMA
FT                 HTVGIFLDFSKAFDTINHDILLYKLSHYGIRGKALEWFRNYLTDRKQYVS
FT                 INGHDSYQRSVSCGVPQGSLLGPLLFVIYINDFRNSSEIMSFILFADDTN
FT                 IFYSHRDPQYLLRTVNSELKRIQAWINANKLSLNVSKTHFMLFSNCIKSL
FT                 PGNILIDNTNLNQAESTKFLGIYIDSDLSWKIHVNYLCKLISRNTGILNK
FT                 LKHEFPTHILLSLYNTLILPYLNYGILAWGNGTKAQLEKLLIIQKRAIRN
FT                 INHAGFLSHTSQLFFNNKVLRIGDVYVYSVGVFMYQLTINELPAVICALF
FT                 VRNNTIHSYSTRQRNLFHLPLTRTLFAQKNITFTGPKLWNDLPIEFTEST
FT                 SLYSFKRKLKCHLLSNYALMVEEA"
XX
SQ   Sequence 2856 BP; 947 A; 552 C; 421 G; 936 T; 0 others;
     gattttaacc taaacttatt acaatgtgac gagaatacga gttgccaaga tttcttggat        60
     ctgatgctat ccaaatcttt tgccccaaca attaccaaac caactagaat cactgaatat       120
     tcagccacct taattgataa tatcttcgta agtggaactc ctatcgtcaa atccggcgtt       180
     attgtcactg atatctccga tcactttccg atttatactg taatttcgaa tgtaatttcc       240
     cattctaatc ccaatacaaa caaatgctcg ggtatccgtt atttatcgga acccgacctt       300
     cgtagactta aggaagcact taccataact gattggtatg cagtgtataa ttgtgatgac       360
     gtggatactt catttgataa ctttatggaa atattaatgc ttactctcaa ttcttttcct       420
     actcgtcaac aaaattgctc aaattacaaa aaacatccta gactcgcgtg gatttcaaaa       480
     tctctcctga aatctatcaa caggaagaac accctctatt acaaatataa aaaaaatcat       540
     acagttaagt ccaaattgaa atattctcgc tatcgtaaca ttctaaccac ctcgttacga       600
     ctagcaaaaa agaattattt taccaaacaa tttaacgtga ataaaggtga tataaaaaac       660
     acttggaggg tgataaataa cgctctgaaa tccaggcgag tctcaactca catttcaaat       720
     attatgataa acgaaaaccg aattcaagat cctcttgtta tagcagagga atttaataat       780
     tattttgcta acattggccc aaatcttgct caaaatattc ctgtatccga tttgcatttt       840
     caatatttcc tggaaacgaa aaacactaat tcaatgttct gcacccccat tctggagcat       900
     gaagtaatcg atatagttaa aaatatgaaa actaaaaaaa gcgcagggaa cgacggtatt       960
     acaaatttta tattaaaaga aataataggt gaaatagttt cccctcttac ccatatactt      1020
     aatctgtcaa taatgaatgg catcgtaccc aaaaagatga aaatagctaa agttattcca      1080
     atttttaaaa aggggaacgc gcaagacatt ggaaattatc gccctatttc tctgctcacg      1140
     tctttttcca aaatacttga aaaattgatg tactctcgaa caatgcagtt tcttattgat      1200
     tttgatattc tgtctgatac ccaatttggg tttaggcaga aacactctac aacccatgca      1260
     ttactcatgt ttttagataa agtagctcat gctatcgacg atatggccca tactgtgggt      1320
     attttcctgg acttctccaa ggcctttgac actattaatc atgatatatt actgtacaag      1380
     ttatcccatt atgggattcg aggaaaggcc ttggagtggt tcaggaatta tctcacagac      1440
     agaaaacagt atgttagtat taatggtcac gattcttatc aaagatcagt atcatgtggt      1500
     gtcccacaag gttcattatt gggtccatta ttatttgtaa tatatatcaa tgacttcaga      1560
     aattcgtctg aaataatgtc ttttattctc tttgcagacg acactaatat tttttattca      1620
     catcgtgacc ctcaatatct cctgaggacc gttaatagtg aacttaagcg gatacaagca      1680
     tggataaatg caaacaaact atcattaaat gtcagtaaaa cccactttat gctgtttagc      1740
     aattgtataa aatccctacc cggtaatatt ttaatagaca atacaaattt aaaccaggcc      1800
     gaatccacaa aatttcttgg tatctacatt gacagtgatt tatcatggaa gatacacgtt      1860
     aactatttgt gcaaactgat ttctagaaac acaggtattt taaataaact aaaacacgag      1920
     ttcccaaccc atattttgtt atctctgtat aacaccttaa ttttacctta ccttaactac      1980
     ggtattcttg cctggggaaa cgggaccaaa gcccaacttg aaaaacttct cattattcaa      2040
     aaacgggcaa taagaaacat aaatcatgcg ggattccttt cccatactag tcaactgttt      2100
     tttaataaca aagttctccg aattggtgat gtgtatgtgt acagcgtagg agtgtttatg      2160
     tatcaattaa ctataaatga gttacctgct gtaatttgtg cactcttcgt acgaaataat      2220
     acaatccatt cttattccac tcgccaacgt aacctatttc accttcccct tacacgaact      2280
     ttgtttgctc aaaaaaatat cacttttacg ggccctaaac tttggaatga cctccccatt      2340
     gaattcacag aatcaacctc actatattcg ttcaagcgca agctgaaatg tcatctccta      2400
     agcaattacg ctttaatggt agaagaagca tgatgttact tttaataatt actgtcgatg      2460
     ttcaaactga atgtttcttt tagtttgctg ttgttaccct gtgaattgcc attgcgtacg      2520
     ggtagtgaaa atgttataca aatattgcta agtgtatgaa tattgtttat tttttttcat      2580
     aataagtttc aatttaatta aattacgttt ttttaatata cacaagacta tgtcattgtt      2640
     gtaacttccg gagcctatga cctacaagca ttgctttctc tttaggctcc atcatatttc      2700
     ttcccttatt caacttagtc ttatgtatca ttcttttttt ttttttgtat aaacgcatcc      2760
     taaaatgagt tcaaaatgta acatgctata tgtaatgatg tactatacaa catgtgagaa      2820
     atatgaaaat aaactgaaac tgaaactgaa actgaa                                2856
//
ID   U1_LV       repbase; DNA   ; SPU   ; 1398 BP.
XX
AC   X01749;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   L.variegatus repeat unit with gene for small nuclear U1 RNA.
XX
KW   LVU1; Repetitive sequence; U1_LV.
XX
OS   Lytechinus variegatus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae; Lytechinus.
XX
RN   [1]
RP   1-1398
RA   Brown T.D., Morris F.G., Chodchoy N., Sprecher C., Marzluff F.W.;
RT   "Structure of the sea urchin U1 RNA repeat.";
RL   Nucleic Acids Res 13, 537-556 (1985).
XX
DR   GenBank; X01749; Positions       1    1398.
XX
SQ   Sequence 1398 BP; 429 A; 275 C; 261 G; 433 T; 0 others;
     aagctttcgg gtctactacc aactagagcc catggaacga gatattaaag agagcaaagt        60
     ataattttgc ccaagtaaga cgacgaccga taaaagaaag gttgacccga taacaggatg       120
     cgagtaagct gacgcttatg tcattataat ctgcaacgtc agtaaagtta ttgtgaagtt       180
     catgaatatt cacatcctta cttcttcaca tcttacgtgc aattttgtac ttgttattac       240
     gtttaaatta tagaattaca tggatacgtc attaatgttg ctccagagag gggcacagag       300
     atttgaggtt tctttctctc aaaacttgcc aaaattgtac aaattcataa aatcatgtga       360
     ctgttttctc tttgtagtgt gagatgtttc actgctttct atcgcagata agatttgatc       420
     aagtacggcg accgatggat ggggagcata cttacctggc gcaggggtcg cattgatcaa       480
     gaaggatgca cccccagggc gaggcttgcc attgcactcc ggcttgctga accttgcgat       540
     tcccccaaac gtggggaact cgggcgtaca atttatggta gcggagatct gcgttcgcgc       600
     tatctcctac aattcaacta atgcaaagaa agaaaataaa agctccccga aaaactctga       660
     tggtgacatg aatggactaa tcccttccaa tttttgggga atttcaacct tatcaggttt       720
     ttcaaaccac tagtttcttt attacttaag gggacatgat tggcattcct ttcaataaaa       780
     gctcgggttt aaatccgtgt gacaaaaata gcatactact ttaacatctg cttcatctca       840
     actgcgaaat gtatgtcgaa ataaactttg ctaagttttg aaagattcta atgagattta       900
     aaaaaaatga ttttccggca gattggctcg ctcattttac tcggtcgcaa gtttccgata       960
     aaaaccccct ccaaatagtt ttctcattga aacaacgtca tccaaaatac gtttcaagtt      1020
     aatccttcca atcaatacat attgtaactg ggtatatttt aaaacctatt ggcccatcgt      1080
     tgtttctttt ccatatgaac attagttagt ggttaaaagt tgcatcatga ttcgtaacta      1140
     aaaaaaaata aatgacccgt ttaaagcgtc agcttggacc aaccaacatt ttcgtcacca      1200
     atctataaaa aggtaaaata tccaggtgca tggtcatttc ccaggggtgg agtccaggtt      1260
     attgactact catttaatgt gtatgaacta gtttcgattt tgtggtgcat tttctcttta      1320
     tcccttgata tggaaataaa caatcatttt aactttatcg agatattaag cctcacattt      1380
     cattctaaaa tgagacga                                                    1398
//
ID   CR1-4_SP    repbase; DNA   ; SPU   ; 1119 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a partial consensus.
XX
KW   CR1 superfamily; CR1-4_SP; non-LTR retrotransposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-1119
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-4_SP, a family of CR1 non-LTR retrotransposons in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 220-220 (2004).
XX
CC   [1] (Consensus)
XX
CC   CR1-4_SP is a family of CR1 non-LTR retrotransposons. The
CC   consensus sequence represents the 3' terminal portion of the
CC   autonomous CR1-4_SP retrotransposon. It encodes the C-terminal
CC   portion of reverse transcriptase. The 3' terminus is composed
CC   of the (TAT) microsatellite.
XX
SQ   Sequence 1119 BP; 339 A; 228 C; 170 G; 366 T; 16 others;
     tataykcwkc ycwtacagca kattgttcar amacacagya tyaattatca tatgtatgca        60
     gatgacttac agctttattt tatttgcaaa cctgtccaga aaatgtgaag aaaattgaaa       120
     actgtatagc tgatgtaagg aactggatga twgagagycg cytaaaacta aatgatgcaa       180
     aaacagaatt cattttgctt ggcaacagta gacagctcag gtaaaattaa ggtttctcat       240
     gttcaagttd gttctgcccc tgtatctcct gtacatcaag ctaggaatct tggtgtaata       300
     tttgattctg ccatgtcact tgaaacccat gtttcaaatt gtgttaaact ggccaattgt       360
     aatctacgta atatccgtgc aattaggcaa tatctctcac ctcaatccac ccaacagtta       420
     gtacatgctt ttgttacttc gcaccttgat aattgcaatt cattactctt tcgactaccc       480
     gccaaccaaa ttaaccgatt gcaaaaagtt cagaatgctg ctgctcgcct tgtaactaac       540
     accagaagat catcacatat cactcctatc ttgaaatctc tgcactggct ccctgttcaa       600
     cagcgtgtga tctataaaat tctactctta acctatcgtg cactaaatga tctagctcca       660
     gaatatattt catcccttct atcaccccac tctgcaggtc gttctggttt acgttcatca       720
     cataatatta grcttaaaga aatacgtacc aaaagaaatt ggggggatag agcatttgca       780
     tcagcagctc cttctttgtg gaataagtta cctttctcta ttcagacggc caacactctt       840
     tctactttca aaactgggct taaaactcac ctgatgctca atgcatattg ttaaatttca       900
     atgttctttt tatacaatgc atgcaaaaca aataatcaca ctgtgccaca ttgtatgtac       960
     catggcacca tgaagttgtg tgatctaatg caagttaaca tttaatattt ctttaatctt      1020
     aagtatgttg aatattaatt taaattattt gtatgcgcct tgagcatctc tagagatgga      1080
     tatgttgcgc tttataaata ttgttattat tattattat                             1119
//
ID   CR1-1_SP    repbase; DNA   ; SPU   ; 1273 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a partial consensus
DE   sequence.
XX
KW   CR1 superfamily; CR1-1_SP; non-LTR retrotransposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-1273
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-1_SP, a family of CR1 non-LTR retrotransposons from the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 217-217 (2004).
XX
CC   [1] (Consensus)
XX
CC   CR1-1_SP is a family of CR1 non-LTR retrotransposon. The
CC   consensus sequence represents the 3' terminal portion of the
CC   autonomous CR1-1_SP. It encodes the C-terminal portion of the
CC   reverse transcriptase. The 3' terminus is composed of the
CC   (TTGAA) microsatellite.
XX
SQ   Sequence 1273 BP; 417 A; 171 C; 170 G; 510 T; 5 others;
     tgttatttct attatatata aatgatcttc ccaattgctc aagtgaattg aagtttatat        60
     tgtttgccga cgataccaac attctttact caacagataa ttattcatca attaatgatg       120
     atttgaacaa taaattgacc aacgtgtcat actggtttaa tagtaataga ttgtctttaa       180
     atactgaaaa gtccaattta atatattttt acaatagaaa atcacatatt cattccaaca       240
     tttctaaaca tttaaaaata tcaatgaatg ataaaattat ccaaagagtc cacacagtta       300
     aatttttagg cgttttcatt aatgaaagta tgtcatggac tgaccatatt ttgtatatta       360
     ctaataaagt gtcaaagagt gttggtatcg ttggaaaact ccgcacagtt ttacctcaaa       420
     gcatattgat attgttgtac aatacattta ttttaccata tttgacttat tgtaatactg       480
     tttgggcaaa tacctacaag tcaaaattga actctctttt ttkgttacaa aagaaagtgg       540
     ttagaatttg ctctctaact tcttatcgtg cccatactag accatnntta tttatgaatc       600
     tcaagtttct tgatgtgtat caattaaata aatattgcat cttaatttta ttatttaaac       660
     acaatcaagg ttttttgccc agttcactta acaatatgct ttcactcaat aatgcaattc       720
     atacttataa tacaaggaat akaaataaat accatctatg ggttgttgaa aaatcttatt       780
     tattattttc tttcagacat aaagcaccaa caatatggaa tactttgcca aataacataa       840
     catctataat gaattacaat ggatttaaaa gaagtgtaaa gcagcatcta atcacatgtg       900
     atttgggtag aatacttttc cactttatat ataatgtgtg tgtgtctgtg tttttgtagg       960
     gcttgtatgt tttttgtttt ttttttttct gttgtttacg agttttcttt ggggcaaaat      1020
     aagtttatgt aatttcaaat ctttattatg ttcatcacaa tttgtttaat tattttdggg      1080
     gagatatctc gacaaactca tttatttggg tttttataac ttcccttttt ccattattgt      1140
     ttaatatttt aatgtactta tgtatattct agtgaaagat tttgcatgtt atttacagta      1200
     ccttttgcaa atgtatgtgt tcttgtaatg tgatttttat ggaaatgaat aaacttaatt      1260
     gaattgaatt gaa                                                         1273
//
ID   Tc1-N2_SP   repbase; DNA   ; SPU   ; 862 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous Mariner/Tc1 transposon - a consensus sequence.
XX
KW   Mariner/Tc1; nonautonomous DNA transposon; Tc1-N2_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-862
RA   Kapitonov V.V., Jurka J.;
RT   "Tc1-N2_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 245-245 (2004).
XX
CC   [1] (Consensus)
XX
CC   Tc1-N2_SP is a family of nonautonomous Mariner/Tc1 transposons.
CC   These elements are flanked by the TA target site
CC   duplications. The consensus sequence is a palindrome. The sea
CC   urchin genome harbors over 1000 of Tc1-N2_SP elements.
XX
SQ   Sequence 862 BP; 262 A; 159 C; 160 G; 259 T; 22 others;
     cactgtcgct cataaaggtg gaatattttt gttttacccc aatttatgga attattttaa        60
     aaataattta aaaataatag atctagataa tagtatacat tctcagattt tattgaataa       120
     taatttgcca atgtgtgttt tgcgtgactg ctaaagcatg tgtatgctac tatgctaatc       180
     aactagcnca tcnacgcggt ttwgtcatcc tgggggctca cagtaacgag gccattgctt       240
     agccantgaa tcatgactgt acgcagcggg gctagggtas gkgcmgyycc cayaaatama       300
     aaataarmaa agaaaatgca ataaattwtc aataattcat tgcattttcc cccggtcccc       360
     aacagaaaaa aatcctctgt acggccatgc tttrwgrcwy aaggcatggc cacatagagg       420
     atttttttat gttggggacc ggggkaaaat gcaatgaatt attgaaaatt tattgcattt       480
     tctttgtttt tttttatttg tgggaactgc cccctaccct agcccccgct gcgtacagtc       540
     atggttcagt ggcaaagcaa tggcctcgta actgtgaggc cccaggatca aaaccgtgtc       600
     gatgtgctat attagtgccc ttttgtgrgg cattaatcct cattactgtc akttatgact       660
     taagggcgta ggtcccctag ttgataagca tagtagcata cacatgcttt agcagtcacg       720
     caaaacaaac actggcaaat tattattcaa taaaatctga gaatgtatac tattatctag       780
     atctattagg aataaatcat tgtcaaaata attccataaa ttggggtaaa aataaaatat       840
     tccaccttta tgagcaacag tg                                                862
//
ID   DNAX-1_SP   repbase; DNA   ; SPU   ; 691 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus sequence.
XX
KW   DNAX-1_SP; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-691
RA   Kapitonov V.V., Jurka J.;
RT   "DNAX-1_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 223-223 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome contains 20-50 copies of DNAX-1_SP. These elements
CC   are characterized by 13-bp terminal inverted repeats (one
CC   mismatch). Remarkably, target site duplications are not
CC   detectable.
XX
SQ   Sequence 691 BP; 164 A; 150 C; 158 G; 216 T; 3 others;
     cacgaagaag aattacacac aaaactcgcg catgcgcaat gcgctcttct gttcgctcaa        60
     gcccgactga cgtcattttt cattcataaa agtgctagcg tcacaatgct ygtagttgat       120
     tgggtgttta ctcatttcat ttgcatattt tcccacaatg ttaaacctat gagtgcgatg       180
     atttctgcct gcgacttctc gattacgttg atatcaaact cgttatattt ccatccygac       240
     ttcgattttt gaacaatttt ttcgccatcg gtgtcatcga tatttctagg tactttcagc       300
     aaaaatcgta tggtggttct ttgtttcggt aagtcatatt ttttgatgat ttcgtcngaa       360
     gtttttgtaa aggatatgta tgtgtaggtt gaagtgtgtg taaagctacg tgcaaattgt       420
     atgtgagcga catgagtgtg tagagagcga catcgttgaa accatataca ctgaatgtgt       480
     ctttggtcgc cattttttgc ttggctgttc gagtttagtg cagggccccg ctcccgcaac       540
     acggccgcta caatacacgg tacaatacac cgcgcacagt gtagcgaatc gcccatgcct       600
     cgcagctagc agacaagcga gggtcgcgcg atcagccaat cagcggcgcg tatttccgtt       660
     cactgagttg gataggggat tcttctacgt g                                      691
//
ID   CR1-3_SP    repbase; DNA   ; SPU   ; 849 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a partial consensus.
XX
KW   CR1 superfamily; CR1-3_SP; non-LTR retrotransposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-849
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-3_SP, a family of CR1 non-LTR retrotransposons in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 219-219 (2004).
XX
CC   [1] (Consensus)
XX
CC   CR1-3_SP is a family of CR1 non-LTR retrotransposons. The
CC   genome harbors ~1000 copies of CR1-3_SP that are ~90%
CC   identical to their consensus sequence. The consensus sequence
CC   represents the 3' terminal portion of the autonomous CR1-3_SP
CC   retrotransposon. It encodes the C-terminal portion of reverse
CC   transcriptase. The 3' terminus is composed of the (ATGT)
CC   microsatellite.
XX
SQ   Sequence 849 BP; 233 A; 158 C; 148 G; 310 T; 0 others;
     tctaggtgtt gttcttgact cttctttgac catgtctcaa caggttactt cactgtgtag        60
     tcattacatt ttcatttgta taacatatat agggtcagaa ggatgttaac tgatgaggca       120
     tgccatcatg ctattcgctc tcttgtttta agccgtcttg ataatgccaa ttctcttgat       180
     taatattaat gtttcggata tcgatagact tcaacgaatc cagaatcgtg cagcccgtat       240
     tgtttcaaat gcaagaaaat atgatcacgt gtctcctttc tttaaacaac tacactggtt       300
     aatacctgtt cacaagagaa taatgtataa agttgcacta tttgtttata aatccatgta       360
     taaccttatc ccatcctata tttctagtct gttttgtccc atccagcaat caagatattc       420
     attacgctca aggtcagatc ctcttcttct gcaaatcccc cgcatcaatt cgaagaaggg       480
     tcaacaaaat ataacttttt ctggtcccac tatttggaat agtctcccat taagcattcg       540
     ttcctgctcc tcagtcggat catttaagag aaatctcaag acttatttgt tttctttgta       600
     attgtttttt gacaggcgtt gtgtggagtt gtgtgggatg tgaacgaggt tgtgtactgt       660
     atgaaccagg cttggttcat gtggtgcaca actttttgaa ttactttaca cagctttaca       720
     caacaaattt tttacagtgt atgcacttgg agagcaaaat aattattctg ttttatttac       780
     taatgtaaag cgctttgagc atgtttatgt aaaggcgcta tataaatatc aatatgtatg       840
     tatgtatgt                                                               849
//
ID   D88I        repbase; DNA   ; SPU   ; 119 BP.
XX
AC   X01062;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.drobachiensis repetitive sequence D88I.
XX
KW   D88I; Repetitive sequence.
XX
OS   Strongylocentrotus droebachiensis
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-119
RA   Johnson A.S., Davidson H.E., Britten J.R.;
RT   "Insertion of a short repetitive sequence (D88I) in a sea urchin gene:
RT   a typical interspersed repeat?.";
RL   J. Mol. Evol 20, 195-201 (1984).
XX
DR   GenBank; X01062; Positions      37     155.
XX
SQ   Sequence 119 BP; 39 A; 30 C; 21 G; 29 T; 0 others;
     tttattatat acctcactta agaaatccag ccatctgatc ggtcaaaatt gcaggccgag        60
     ggcaatggca caattgtaac ctccccgaga gcgtataaaa ccaactatgt ctctcaaag        119
//
ID   REP-1_SP    repbase; DNA   ; SPU   ; 408 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   02-MAY-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   Interspersed repeat - a consensus sequence.
XX
KW   Interspersed Repeat; Non-autonomous; P-N1_SP; REP-1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-408
RA   Kapitonov V.V., Jurka J.;
RT   "REP-1_SP, a family of interspersed repeats in the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 93-93 (2005).
XX
CC   [1] (Consensus)
XX
CC   The genome contains >3000 copies of REP-1_SP. The average divergence
CC   from the consensus sequences is 85%. Copies of REP-1_SP are usually
CC   truncated at their 5' end. REP-1_SP contains a tandem duplication
CC   of a 74-bp unit (pos. 200-273 and 274-349). This unit is also
CC   present in P-N1_SP. Classification of REP-1_SP is not clear.
XX
SQ   Sequence 408 BP; 110 A; 128 C; 56 G; 114 T; 0 others;
     cccccccctt cagttttttt tatgtgtgta ttttggagga accccccccc cctcttttgt        60
     gatttttttt tttttttttt tatttattaa attaaaaaaa aaaaaaaaaa attatgccaa       120
     tggctgacct aaaaaaggtg accttacccc ccccccccca acggaacaaa atgtcaaatt       180
     ttcaaatttc gagacaaaaa aaaaaaaaaa gtgtcctctt accccccccc cccccccccc       240
     gcttattcag cggctggctg agtcgttgcg attaaaaaaa aaaagtgtcc tcttatcccc       300
     cccccccccc ccctgcttat tcagcggctg gctgagtcgt tgcgaatttt tggcccgatt       360
     tcaaaaaacc cccccccccc ccttgaaaaa atcctgcgta cgccactg                    408
//
ID   Transib-N1_SP repbase; DNA   ; SPU   ; 884 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib-N1_SP is a family of nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; Non-autonomous.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-884
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived from
RT   Transib transposons.";
RL   PLoS Biology (2005).
XX
CC   [1] (Consensus)
XX
CC   Transib-N1_SP is a family of nonautonomous DNA transposons that
CC   belongs tothe Transib superfamily. The genome harbors ~100 copies of
CC   Transib-N1_SP that are ~94% identical to the consensus sequence. These
CC   elements are characterized by 5-bp target site duplications and 60-bp
CC   terminal inverted repeats (2 mismatches).
XX
SQ   Sequence 884 BP; 270 A; 167 C; 166 G; 279 T; 2 others;
     cacagtgggc cagggaggaa ccaaagtgcg ccaaaactca tttttggtga tttatttttt        60
     tcaatttttt ttcttgccca gttgaaaggt aatacattga ggaatacctc agtaaaatat       120
     ttaattccgg tatgcacaat aagggtataa atttactcct tcaaacagca aaatcctaca       180
     tattcacagt tttagtgcaa aagtgactta ttttataaat ctttcaattt aacatgaagt       240
     ttttaagtta ttgatatgaa attgctctca catattcctg atagttcatt tcgttgcatg       300
     aatgggttaa aattaataga aacacaatct tcatgatata ttatagggta attcactgaa       360
     aaatggacta attatccatg tttttttata aatccagagg aaatgtttag atctccgcag       420
     agttccgctt aaattttaat accaccattt tttctgatgt ctaagcttya agttgatacc       480
     aaatttggct gcccgatctt gcccgttgtt atgttagagc cgatttccct tgccacattg       540
     ccccgaaaaa tgtggggttt ttttkggtcc gcggctgaat catgaaggat tcgcggtcat       600
     aaatcacggc gcgtgggggc gcgtgacact tgttctgaca ccgcggacca aaataaacac       660
     attttttcgg ggcaatgttg caaggaaaac ggctctaaca taataacggg cagaatcggg       720
     cagccaaatc tggtatcaac ttaaagctta gacatcagag aaaatgttgg taataaaatt       780
     taagcggaaa tccctggaaa tccaaacatt tcctctggat ttataaaaaa taaatccccc       840
     aaaatgagtt ttggcgcact ttggttcctc cctggcccac tgtg                        884
//
ID   SU7N33      repbase; DNA   ; SPU   ; 195 BP.
XX
AC   X05414;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus histone H4-H2B spacer 7N33 intermediate repetitive
DE   sequence.
XX
KW   Repetitive sequence; SU7N33.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-195
RA   Yager N.L., Kaumeyer F.J., Lee I., Weinberg S.E.;
RT   "Insertion of an Intermediate Repetitive Sequence into a Sea Urchin
RT   Histone-Gene Spacer.";
RL   J. Mol. Evol 24, 346-356 (1987).
XX
DR   GenBank; X05414; Positions      20     214.
XX
SQ   Sequence 195 BP; 84 A; 29 C; 26 G; 56 T; 0 others;
     tcaagttcaa gttcaagttc gtttatttac actcatcatt aaaaatacaa gaacatatac        60
     aatcaaatac ggaataatca cacataaaat atcatacatt caataacaac aaaataacat       120
     aacataatgg gagtgaaggg atgagctaaa aaggagtatg gtccttatgt tagagttcat       180
     tccttagtat aatat                                                        195
//
ID   CR1-6_SP    repbase; DNA   ; SPU   ; 5450 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   02-MAY-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-6_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; CR1-6_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-5450
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-6_SP non-LTR retrotransposon from the sea urchin genome.";
RL   Repbase Reports 5(4), 78-78 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-6_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-6_SP are ~3% divergent form the consensus sequence.
CC   CR1-6_SP encodes a 1027-aa protein (pos. 1778-4858) composed of
CC   endonuclease and reverse transcriptase domains. The 3' terminus is
CC   composed of the (GAAAT) microsatellite.
XX
SQ   Sequence 5450 BP; 1743 A; 1004 C; 835 G; 1868 T; 0 others;
     atgtgtcaac aaaaatatct gtgagtggaa ccaaagtgtt acttcattgg aaaaaaaagg        60
     gaaccggaaa ttggaatctc cacagagact agaacttgtt gttcaagaag gatcgatagg       120
     gctacctctc ttgtaagcgt ctacatgtac aactagtttt taatttccta aaagtaaaac       180
     tgatctcttg cctttaagtt ctttttatat cctattagcc ctacttcttt cagtaaatgt       240
     acctctcacc atttactaca gttatgttat ttatatgata tcaaacttag atatctcaaa       300
     gcccaagatg cggcttataa tttcattttg aagtcttgat tacgtttaaa ctgccacatg       360
     cactgttcta aatcctaact gacaattagt tacaacttgc ggtagcctag ctcatttgag       420
     ttattctacc tttaaagtgg cgctaccact actgtacata cttgtaaaaa tgacaacata       480
     tatctaacct tttaataaat cgatgctttt ttaaaataaa tcaacaaaca aacaaatttt       540
     tctttcagta aatatatctc taaacattta gatggtagat tattattgat tggcaggtag       600
     tatattgcac aggaaatact tgaggtgaaa tttacacttg cagaattttg tgtaacatac       660
     aagtttggtg atatgtacca tagtagaatg cagaaattat tattctaagt taattggtat       720
     caaatttaga tatctcgaag cccaagatgt ggcttaaaat ttcattttaa cattttgttc       780
     acgtttaaac tgccacatgc attattatct caacaacttt acaacttgca gtagcatatt       840
     tgagttattc taccgttact accacaacct tgtacaaatg acaatgtcta acctttgaac       900
     ttaaatggat gcttatttat gtgaatcaac aaacaagcag ttcttaccct cagtaaaaca       960
     tttactaaat ttcatgttat tacaatgttc aacgatatca aacttagata tctcgaaccc      1020
     caagttgtgg ttaaaatttc gttttgaatt ctctgtaaaa gtataaacat tgaactgatt      1080
     attctgtata acttgatgta gcgaagcata ttgagttatt ctatcttttg aagtggtact      1140
     acatgtacca caaccatacg tattgtgtat tctaaaaagt tgggaataaa tgtcaataat      1200
     tgaagaaaaa aggggagaaa atccttgttg attttactgt tctgattaac ccataaaagt      1260
     catctgtacg acgcattacg catgtaaaat ccatgcctgc gaacgggagg gggggggggg      1320
     ggggggtggc caaaatcaaa tcaagagctt gcatatattt ctgctcatca tgttcgcaaa      1380
     gtataggaac attgtatgtt ttattttaag tctctttttt tgtatgccgt ggtcaaaagc      1440
     attgattaag gtgttttgtt attccctttg tgttttcttg ccatgccata cgcatacctg      1500
     aagtggtgta tacaaattgt gtttaaatgt accaaatttc aaattctcaa attgttgagg      1560
     ttgataagta acaatagctc agctggtatt tttgttatac gaactagtca cttttatgtg      1620
     cgtagtctta tgtacgacat ttattcggag aagccagatt tacttctgtg cttattcttc      1680
     tgtcatgtat tcgcctgtct ttttttctta ttcagtgttc tttacattca atgcctagag      1740
     ttaaacaaat tccttaacaa ctacttactt caccggaatg tctctgttat atatgatgaa      1800
     tgatgtaatt aacatgaata acactcaaga tgccacaata aatgttaacc ttatgaatag      1860
     agaagagggt gacaactcag acatagcagc atttctaaat tcaacaactc ctgaattgca      1920
     gcttgaaatc gattctaatg agatttttcc tcagcatttg tttactggtt acctcctaga      1980
     aaaagagctt acgtcatcac cctattcaaa ttctaaccaa ctctttgcct cacattttaa      2040
     tattaggagt cttagcaaaa attttgatca gttccagtta ctcattaacg atttaaaatg      2100
     taatcacgga gtcataggtg tttgtgaaac ttggctcaat gaaatgtcac cttcttcact      2160
     atttgatatt catggttaca gacttataac cagtaacagg acaaataaaa ggggaggtgg      2220
     agttggtttt tatgtcacca aaaacttgaa ctgtgaggtg ttagttgaat ttagccatat      2280
     gtcagaagct atcgaaaata tctttattga aattaaagtt ccaaacaagg gtaatttaat      2340
     tgttggagaa gtatataggc cgccgaattc aaaccctatt gaatttattg aatcactcca      2400
     cgccctttta tcagagaaat actttgaaaa caagacatgc attattatgg gcgacttcaa      2460
     tctcaatatt ttgaaatgtc gagataacca caactgccgt gattttctca atttgatgtt      2520
     gtctaaatct tatattcctc tcatcaggaa acccacccgt atatccgatg ttacttctac      2580
     acttatagac aatatttttg taaacaatct atcttcccta gtcacttctg gtataattgt      2640
     atctgatgtt actgaccatt ttcccattta tgctctcata tcttctttca tgacaaagaa      2700
     ttctgatcgt tcgcatactt caaatattcg tgtaatgtca gaaacaaatc tcaatagact      2760
     tagggagaga ttgagatctg ttgattggtc acctgtttac aatcatagtg atgtaaacat      2820
     ttcgtatgaa aactttattc atttattaac atctaactta aattcaacca tacctcttca      2880
     gaaatcaaat ttttccaacc ataaaaagat tcctaaaagt ccttggatca cgaagtgtct      2940
     ccttaagtct attaatagaa aaaataaact cttctataaa cacagaaaaa atccgaatgc      3000
     tcgaaataag gctcaatacg ttcgttaccg taatgtcctc acatcgtctt tacgtttagc      3060
     taaacaattg tatttctcac gccagtttga aaagtacaaa tacgatataa agagtacgtg      3120
     gagggtgatt aacgaggctt tgaaaactaa aaacgatacc gatcccccta agtatattct      3180
     taaaaacaat tgcaaaatcg atgatccctc agccatggct gaggtattca atgacttttt      3240
     tgtgaatata ggaccgaatc ttgccaatac tatcccaaag tcagatttag agtttcaaaa      3300
     ttttctaaaa gctcctaacc ctcagtctct ttttttcaca ccagttctag agattgaaat      3360
     caaaactatt ataaccaatc taaatacgaa gaagggttcg ggatatgatg gaatcacaaa      3420
     tttccttctt aaaaatatta ttgatgaaat aatttcccct ctcatattca ttttgaattt      3480
     gtctttaacc acgggcacag tcccacaaaa tatgaaaata gccagagtcg tccctatttt      3540
     taaaaaaggt caaaaagaat ccctcgataa ttatcgtccg atttcactct taacatccat      3600
     ttctaaaatt ctcgaaaggt tggtacacac ccgaacacta aattttatta cccatagcaa      3660
     agttttatgt gactctcagt ttggttttcg aaagaatcac agtacaagtc atgctttatt      3720
     atcttttata gacaaaatag cccacgcaat tgacaacgtt tctcacacta ttggggtttt      3780
     tctagatttt tcgaaagcat tcgatacgat taaccacgat attttaattt acaagttacg      3840
     tcattatgga tttcgcggag tgcctctaga ctggttcata gactatctaa caaatagaaa      3900
     acagtttgtc agtgtgtccg gtcatgattc ccatttgaaa ttggttacct gtggcgtccc      3960
     gcaaggctcc ctacttggcc cgcttttgtt tattttatat attaatgatc tcagaaattc      4020
     ctcgcagcta ctttcattca tttgttttgc ggatgatact aatttattct ttacacatcg      4080
     tgaccctcgt actctagttg acactgttaa taaagaactt gtatctgttc agtcctggat      4140
     ttatgcaaac aagttatcac taaatatagg caaaactcac tatatgcttt ttagtaatac      4200
     attaaaaata cttcctaatc atgtcaattt taacaatacc gaactggaac aagtcgactg      4260
     cactaaattt ctgggacttt atattgatag tgatttatct tggaaatccc acattactaa      4320
     tttgagcaag gtcctctcaa gaaatactgg tatacttaat agacttaaac acttttttcc      4380
     cagtaaaatt ttattatcag tttattctgc tttaatgact ctcgcctggg gtaacgctag      4440
     tggaaattta ataaatatgc tttttcgcat tcaaaaacgt gccattagaa atattaatca      4500
     tgtaggatac ctttttcaca ccaacaatct gttccatgaa aacagaatcc taaaattatc      4560
     agacttattc tattgcaatg ttggtatatt catgtacaat ttatctacta ataacctacc      4620
     tgaaatattt ttacaaatgt tccggaaaaa tagatcccta catgattatc ccacacgtca      4680
     gagcaacgca tatcaccttc cacgtacccg aactgttttt gcccaaaaaa cgattatgtt      4740
     tacaggaccc agttactgga atgccctccc gttagagtta attgaaagtc cttccttata      4800
     tacttttaaa cgtaaactga aggaactgct tttcaaagca tatcttgatg tcaatgtatg      4860
     acctttgcgt gcaagcgcgt tgtgtttggt tgtcgtgctt tcggaaatac gtatttaaaa      4920
     aaaaacaaca acaataaaac atctttactt ctatatccga gagtgcgacg gctgacacag      4980
     tgtgcttgct cgcttcgtta ttctatttat gtatgtaata tacaaatgta ttcattttac      5040
     tattatctgt aatgttcgtt taccagctga gcacccattg tatgataatt taagtacgtg      5100
     tacttttatc tacactgtaa gaaaggaagg gataatataa acagcaccac cgcaagttta      5160
     ttattatttc ctttttattt tttgattcat ttagactggt cactattaca tgtatatccg      5220
     tcctccattt attaccacaa atacttcact ggggcctaca gctttacaag cttgctttca      5280
     tgtaggtccc atcatatttc tcttagttaa atcagtactc catattgacc acttatcttt      5340
     gttatttatt atgtattatt gaagaaaaaa acaattttgt actttatttg aaatgtatat      5400
     gtaaatgtat gttcatgaga aatatgaaaa taaatgaaat gaaatgaaat                 5450
//
ID   Tc1-N1_SP   repbase; DNA   ; SPU   ; 553 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous Mariner/Tc1 transposon - a consensus sequence.
XX
KW   Mariner/Tc1; nonautonomous DNA transposon; Tc1-N1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-553
RA   Kapitonov V.V., Jurka J.;
RT   "Tc1-N1_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 244-244 (2004).
XX
CC   [1] (Consensus)
XX
CC   Tc1-N1_SP is a family of nonautonomous Mariner/Tc1 transposons.
CC   These elements are flanked by the TA target site duplications
CC   and are characterized by 95-bp terminal inverted repeats.
CC   Tc1-N1_SP elements are ~90% identical to the consensus
CC   sequence. The sea urchin genome harbors over 1000 of Tc1-N1_SP
CC   elements.
XX
SQ   Sequence 553 BP; 181 A; 97 C; 91 G; 182 T; 2 others;
     cagtgcgtcc cagaaaaaac gaaaccgaga attatcgatg ttttatcata acttaatcac        60
     aattataatt aataaatgac acatatttgt aaagcttaga tcctcctctt tcatttgatg       120
     caactcatat gatgcatatt tcacgcatga gtgattaaaa acaatttgaa gagaggaaac       180
     caaaaagtca tttggcgggc ggtatctgaa tttcaaagag aaaatcacat ttctagaaag       240
     ttcaktttct gccctttcat atgacacctc aatcaggaaa aatgagccag gaataacaaa       300
     gttctgtttg tttaaagtaa tgcttgcatt tccataattt gattaaacga attcgttttc       360
     actggctgcc tgccgtagca acaaacagag ttgacaaaag acttaactcc gtttcgttga       420
     cgatcagcca tgcatgaart ctttcgtctt tgttatgctt tacaaatatg tgtcatttat       480
     taattataat tgtgattaag ttatgataaa acatcgataa ttctcggttt cgtttttttt       540
     ctgggacgca ctg                                                          553
//
ID   P-N1_SP     repbase; DNA   ; SPU   ; 302 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   02-MAY-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus sequence.
XX
KW   P; DNA transposon; Interspersed Repeat; non-autonomous; REP-1_SP;
KW   P-N1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-302
RA   Kapitonov V.V., Jurka J.;
RT   "P-N1_SP, a family of nonautonomous DNA transposons in the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 92-92 (2005).
XX
CC   [1] (Consensus)
XX
CC   The genome contains ~100 copies of P-N1_SP. These elements
CC   are characterized by 13-bp terminal inverted repeats and
CC   7-bp target site duplications. Putative classification: P superfamily.
CC   The average divergence from the consensus sequences is ~88%.
CC   P-N1_SP is a composite transposon. Its internal portion
CC   (pos. 59-126) is derived from a REP-1_SP transposable/repetitive
CC   element.
XX
SQ   Sequence 302 BP; 65 A; 55 C; 113 G; 69 T; 0 others;
     cagggctgtc aactttggga aactgcttgg agggagattt tttttggaga agcaagacaa        60
     gaaattgcaa cgactcagcc agccgctgaa taagcggggg ggggggtaag agcacatttt       120
     ttttttgtac ggtacggttt ggcgggaggt tttttcataa accgggagat tctacatcgt       180
     tggcgggaga gcgggaggaa ggcgtggtgg cgggagtctc ccgctacgag cttttggggc       240
     ggcgggagaa tgagcgtggt ggcgtgagac tccctccaaa tgcgggaggg ttgacagccc       300
     tg                                                                      302
//
ID   CR1-18_SP   repbase; DNA   ; SPU   ; 4770 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   02-MAY-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-18_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; L1 ORF1;
KW   endonuclease; reverse transcriptase; CR1-18_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-4770
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-18_SP, a family of non-LTR retrotransposons from the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 76-76 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-18_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-18_SP are ~2% divergent form the consensus sequence.
CC   The consensus sequence is still incomplete at its 5' end.
CC   CR1-18_SP encodes two proteins:
CC   343-aa CR1-18_SPp1 (pos. 117-1145) similar to the L1 ORF1 protein,
CC   and 1005-aa CR1-18_SPp2 protein (pos. 1370-4384) composed of the
CC   CR1-like endonuclease and reverse transcriptase domains. The sea
CC   urchin genome harbors other young CR1 families characterized by the
CC   L1 ORF1 protein (e.g. CR1-12_SP, CR1-14_SP, CR1-16_SP). Likely,
CC   this is a feature of all CR1 non-LTR retrotransposons in sea urchin.
CC   Presumably, the L1-CR1 hybrid emerged in the past as a result of a
CC   template switch during reverse transcription. The 3' terminus of
CC   CR1-18_SP is composed of the (AACTTG) microsatellite.
XX
FT   CDS           117..1145
FT                 /product="CR1-18_SPp1"
FT                 /translation="LFLICSASKHHQLPILGVKCGSSLELVFICSDYKLV
FT                 SYTSIVCSVPPVPFAVFIDICSTVTSGAVLLPCLLIFSLSSCQFTMSINT
FT                 VKAVLAELFEKEEFFQAISDGVEKKLGTILDRLIQQEACITEFVSTGKVR
FT                 DAQIRDLETKLSSMETRCDKLESDLMGVQNGKDQQDQQFKSLQKELNSRN
FT                 EEAHSLKRNINSLEQYSRRNCVRIFGVKEKPQENTDEIVYDVARQMGITF
FT                 DPSDIDRSHRVGKVPADKARSRGIIVKFRSSKCCQQLIANRRKLKGTHIS
FT                 VFEDLTASNFKLLSDAQACPKVLAAWSLGGRIYVSAATTNGTTMKHLITR
FT                 KEDLQKL"
XX
FT   CDS           1370..4384
FT                 /product="CR1-18_SPp2"
FT                 /translation="MCVVSMSEKQSYVQSLQSIDLQTIYEYLSPENNENG
FT                 YNYGPSQSFYTPDEFNDYSKTKLKNYSCVFSSLHCNCRSMNKNFENLTIF
FT                 LNTLDVQFSLLGITETWLKESDCFYNIDHYSFLGNGREAKRGGGVAIYIR
FT                 NDIDFKSRADLDLNTVHFESIFVEISNFTKNIIVGVIYRPPNQSVQSFIE
FT                 SFDEILNIVKKENKLLYLMGDFNLNLLKVTSCKRVNEFLDVCMFNNIYPL
FT                 IHTPTRVTNHSASLLDNIFTNDLEEIFAGVILGDVSDHFPVFSISNLQLQ
FT                 IKKEHASVKRDFNKENSQLFVNEIMNVCWSVENHDANEAYNDFLQKFLNI
FT                 YESCFPIKKSVKKKFKNKPWFNKPLRKLCNKKCYLYRRYVKKPTPERHEK
FT                 YKNFRNKVTEEIKETKRAYFKGKFQNAAGDMKNTWKIINGVLGRGVKKKV
FT                 LPSSIQCNDAMINGTAAMCNAFNKYFVNIGHTLSSSFVNSGDCMQHVIKN
FT                 NSSAFFTPCTPKEVINIVSKLKNGKSPGFDGVDITLVKNVIHILCYPLCD
FT                 IINLSLNTGVVPDKLKIAKVIPIYKNGSNDNLSNYRPISILPIFSKILEK
FT                 CVYSRVYKFLEKCNIITPKQFGFRAGHSTSSAITEFIHKVTNAFDNKEIM
FT                 IGLFLDLSKAFDSLDHSILLKKLECYGFRGIVLEWFKSYLSNRKQYVVLE
FT                 KCESQTMAIRCGVPQGSILGPLLFLLYVNDICNVSKVLELILFADDTSVF
FT                 MSHQDIVSLQNMFNTEFAKLVDWLYINKLVINIKKTHFMIFTKKHIDVTQ
FT                 IKVKVKESVIEHVTHLTFLGVTIDDKLNWKEHTGVVCNRLAKHVGVFYKL
FT                 KFLPKEILMILYNTLILPHLNYCILVWACSSMQNTNRLLILQKKIIRIIS
FT                 HSQYLAHTLPLFYNLNFLKVNDIYVYQCAIFMYLCFKKLLPNTILQYFQL
FT                 NKNIHGHQTRISNNFHIPGVRTLVSQNTIFFRGPKIWNDIPIDIRLSPSL
FT                 NSFKRKFKLYLLRQYSIVQ"
XX
SQ   Sequence 4770 BP; 1555 A; 721 C; 798 G; 1696 T; 0 others;
     cttcatattt tatttcctaa aacgatggcg ctctttgacg tctcctacga gtttttttag        60
     ctgcaagaat tttctatttt tactactcat ttctcttctt catcatcttc atttgactgt       120
     ttttgatatg tagtgcttct aaacatcatc aactgccaat attaggagtc aagtgtggca       180
     gcagtttgga attggtcttt atttgttcgg attacaagct tgtaagttac acgtcaatcg       240
     tttgttcagt cccaccagtt ccttttgctg tatttattga catttgtagt accgtgactt       300
     ccggcgcagt gctcttgcct tgtcttctga tattttcatt atcctcttgc caatttacaa       360
     tgtctatcaa tacagttaaa gccgttctgg ctgaactttt tgaaaaagag gagttctttc       420
     aggcaatttc agatggcgta gagaagaaac ttggtacaat tttagacaga cttatacaac       480
     aagaagcttg catcactgaa tttgtatcaa cagggaaagt gagggatgcg caaatacgtg       540
     accttgagac aaagttgagt tctatggaga ccagatgtga caagctggag agtgacctca       600
     tgggtgttca gaatgggaag gatcaacagg atcaacagtt caaatcgctt cagaaggagc       660
     ttaacagccg taatgaagaa gcgcatagcc ttaaacgaaa catcaattca ttggagcagt       720
     actcgcgtcg aaactgtgta cgcatttttg gagtcaagga aaaaccgcaa gaaaatacag       780
     atgaaatcgt ttatgatgtc gcacggcaaa tgggaatcac cttcgacccg agtgacatcg       840
     atcgcagtca ccgtgtagga aaagttccag ctgacaaggc taggagcagg ggtatcatcg       900
     taaagtttcg ctcctccaaa tgctgtcaac agctaatcgc aaatagaaga aaactgaaag       960
     gaactcacat atctgtgttt gaagacctga cagcgtctaa ctttaaactg ttgagtgacg      1020
     cccaggcttg ccctaaggtt ctagcagcat ggtcattagg tggacgtatt tatgtaagtg      1080
     ctgcaactac aaatgggact acaatgaagc atctcatcac acgcaaagag gacttacaga      1140
     agctgtaatt ttttatttct attttaatga tcttcagttc ttgatgaatt ttatataggc      1200
     tcctagtggc ttttcttctt acaatacatc gaacatttgt cgttgttttt gttttgtttt      1260
     tttgccgttt atctccattg aacttttttt tttctttctt tctttcccct tttccctttg      1320
     catttgcatt tgcatttttt tatttttata tttgtaggtg tgtctgtgta tgtgtgtagt      1380
     gagcatgtct gagaaacaaa gttatgtgca atctttacaa tctattgatt tacaaactat      1440
     ttatgaatat ctgtctcctg agaataatga aaatggatac aattacgggc cttcccagtc      1500
     tttttatacc ccagatgaat ttaatgatta cagtaaaaca aaattaaaga actattcatg      1560
     tgtcttttct agcttgcatt gtaattgcag gagtatgaat aagaattttg aaaatttaac      1620
     tatatttctt aatactttgg atgtgcaatt ttcgctttta ggtataacag aaacgtggct      1680
     gaaagagagt gattgttttt ataacattga tcattattca tttttaggta atgggagaga      1740
     agctaaaaga ggtggaggag ttgcaatata tattagaaat gatatagatt ttaaaagtag      1800
     agctgattta gatttaaata ctgttcattt tgagtctatt tttgtagaaa tttctaattt      1860
     caccaagaat attatagtag gggtaattta tcgtccacca aaccaatcag tgcaatcttt      1920
     tattgaatca tttgatgaaa ttttaaatat tgtaaaaaaa gaaaataaat tattgtattt      1980
     aatgggtgat tttaatttaa atttattaaa agttacatct tgcaagagag tcaatgaatt      2040
     tcttgatgtt tgtatgttta acaacattta ccctcttatt catactccaa cacgtgtaac      2100
     caatcattct gcttccttgt tagataatat ttttactaat gatttagaag aaatatttgc      2160
     aggtgttatc cttggtgatg tcagtgatca ctttccagtt ttttcaattt caaatctaca      2220
     gttacaaatt aaaaaggaac atgcttctgt taaacgtgat tttaataaag aaaattcaca      2280
     gctttttgta aatgaaatta tgaatgtatg ttggtctgtt gaaaatcatg atgctaatga      2340
     agcctataat gattttttgc aaaagttttt aaacatttat gagtcatgct ttccaattaa      2400
     aaagtcagtt aaaaagaaat tcaaaaataa accatggttt aataaaccac tacgtaagct      2460
     ctgtaataaa aaatgttact tatacagacg atatgttaaa aaaccaactc ctgaaagaca      2520
     tgaaaaatac aagaatttca gaaataaggt aactgaagaa attaaagaaa caaagagagc      2580
     atattttaaa ggtaaatttc aaaatgctgc aggtgatatg aaaaacacat ggaaaataat      2640
     caatggagta ctgggtaggg gtgtaaagaa gaaggtgcta ccaagttcaa ttcagtgcaa      2700
     tgatgcaatg ataaatggga cagcagcaat gtgtaatgct tttaataaat actttgtaaa      2760
     tataggccat acactgtctt cttcttttgt aaattctggg gactgtatgc aacatgtaat      2820
     aaaaaataat tcatctgcat tttttactcc gtgtacacca aaagaagtta ttaatattgt      2880
     ttctaaactt aaaaatggca agagtcctgg ttttgatgga gtggatatca cattggttaa      2940
     aaatgttatt catattttat gttacccttt atgtgatatt atcaatttat ctttaaatac      3000
     tggtgttgtc ccagacaaac ttaaaattgc aaaggttatt cctatttata aaaatggatc      3060
     aaatgataat ttatcaaatt ataggcccat atctattctt cctatttttt caaagatttt      3120
     agagaaatgt gtatatagtc gtgtatataa attcttggaa aagtgcaata tcattactcc      3180
     caaacaattt ggttttcgag cgggacactc tacttcttct gccatcactg agtttattca      3240
     taaagttaca aatgcctttg ataataaaga aataatgatt ggcctgtttt tagatcttag      3300
     caaggctttt gattctcttg atcactcaat tttattaaaa aaattggaat gttatggttt      3360
     tagaggtatt gtactggaat ggttcaaaag ttatttaagt aatcgcaaac aatatgttgt      3420
     tctagaaaaa tgtgaatcac agacaatggc gataagatgt ggagtgcccc agggctcaat      3480
     tcttgggcca ttattatttc ttttatatgt aaatgatatt tgcaatgttt caaaagtgct      3540
     agaactgata ttatttgcag atgacactag tgtgtttatg tcccatcaag atattgtatc      3600
     tcttcaaaat atgtttaata cagaatttgc taaactggtt gattggttat atataaataa      3660
     acttgtaatc aatattaaaa aaacacactt catgattttt accaaaaaac acattgatgt      3720
     tacccaaata aaggttaaag ttaaggaatc tgttattgaa cacgttacac atttaacttt      3780
     tttaggagtc acaattgatg ataaattaaa ttggaaggaa cacactggtg tcgtctgcaa      3840
     tagattggct aaacatgttg gtgtatttta taaattgaaa tttttaccta aagaaatatt      3900
     gatgattttg tataatacat taatattacc ccacttaaat tattgtattc ttgtatgggc      3960
     atgctctagt atgcaaaata caaataggct tttaatttta caaaagaaaa ttataagaat      4020
     tatatcgcac agccaatacc ttgctcatac tttacctctt ttttacaacc taaatttttt      4080
     aaaagtaaac gatatttatg tttatcaatg tgcaattttt atgtatctat gctttaaaaa      4140
     acttttacca aatactattt tacaatattt tcaacttaat aagaatattc atggccacca      4200
     gaccaggatt tcaaataatt ttcatattcc aggagtaagg acactagttt cccaaaatac      4260
     aatttttttc aggggtccaa aaatttggaa tgacataccc atagatattc gactgagtcc      4320
     atcactaaat agttttaaaa gaaaatttaa actgtacttg ttaagacaat actcaatagt      4380
     gcaataacct atattcttaa tgttcatcag acagaaaagt gtgtgttggt gtgtatggga      4440
     gagagtgtat gtgtgaatgc aaattatttt ctcccttttt tttcttcctt tttataacaa      4500
     atacaaaatt taaataatgt acttagtttt ttatacaatt actggagaca gacttttaca      4560
     taaggcccgg ccttcctgtc tagtctccaa atactttcat taatgtacat gtttaaaatg      4620
     ttttttccct tgtccatcat gtcttctcca cttgtgttat cctcatgtta tatattgata      4680
     catgtattat attctaactt ttatatgttt gttttccttt gtatattttt aatgaaagta      4740
     ttgaataaag tgaacttgaa cttgaacttg                                       4770
//
ID   DNA6-1_SP   repbase; DNA   ; SPU   ; 364 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus sequence.
XX
KW   DNA6-1_SP; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-364
RA   Kapitonov V.V., Jurka J.;
RT   "DNA6-1_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 222-222 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome contains several hundred copies of DNA6-1_SP. These
CC   elements are characterized by 6-bp target site duplications
CC   and 11-bp terminal inverted repeats (two mismatches).
CC   Classification is unknown.
XX
SQ   Sequence 364 BP; 166 A; 43 C; 75 G; 80 T; 0 others;
     caggggtgat agtgagcact aaaaaaaaaa taggtttttt tgttttcccc tcaaccacgc        60
     cccccttgag taaaaaaaaa aaagaggatt cgcggggaaa aaatggcatc taacaacatt       120
     cccccctttc gagtaagaaa attgggagaa aaaaataggg caaaataggg aagaatagag       180
     aaaataaggg ggaaatcggg aaaatcagga taaaaaggga agaaaaaaaa attggttaaa       240
     aaaaaaaaaa aaaaaaaaaa atctggattt tttttttttt ttttttaaat cgggaagaaa       300
     aaaaaaatcg ggaaaaataa aaaaaatcgg gaaaccgatt taaatcgggt ttttatcagg       360
     cctg                                                                    364
//
ID   Harbinger-N1_SP repbase; DNA   ; SPU   ; 500 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of nonautonomous Harbinger DNA transposons - a consensus
DE   sequence.
XX
KW   Harbinger superfamily; Harbinger-N1_SP; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-500
RA   Kapitonov V.V., Jurka J.;
RT   "Harbinger-N1_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 237-237 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors a few hundred copies of Harbinger-N1_SP
CC   elements that are over 90% identical to their consensus
CC   sequence. These elements are characterized by 3-bp target site
CC   duplications and 14-bp terminal inverted repeats.
XX
SQ   Sequence 500 BP; 141 A; 100 C; 125 G; 132 T; 2 others;
     gggtgcgttt atcgaccaaa tttttggcta gaatcaggtt tctcaaacgt ctttcaggca        60
     aatttagaag gtgataaacg caaagccttt ttcaaacgtc tttagatatg ggcatatcta       120
     aagacgcaaa aaggtgtgtt ttgaatgtga catacagcca gaatcacgtt tctgagagat       180
     gataaacgca aagctgtttt gaaccycaca tacaaatcgg acctcccagg ttaatttccg       240
     gttcggagaa tagcgcgcca tgtgttgtgt catgttgttg tacaagcatg tgtgtgtagt       300
     tgacctccga gaaactgtct gcttcccggg tcaaacggcg caaagcagct gcgcagagac       360
     aaggccttta ttttgaatcg tgaagagacg ataaacgcga catcccgcaa atcacgwtcg       420
     tatagtgggg ttcgatagtg gggtttgata gtggggtacg atatgtacat atctagtggc       480
     aagacccgat aaacgcaccc                                                   500
//
ID   CSP2137     repbase; DNA   ; SPU   ; 226 BP.
XX
AC   J01197;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2137.
XX
KW   CSP2137; Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-226
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01197; Positions       1     226.
XX
SQ   Sequence 226 BP; 62 A; 45 C; 30 G; 89 T; 0 others;
     aattcgtttg ataaaattat ggagagctcg catgatacgt catagagttg ccaatttgtg        60
     tttgattgat cacaacttca aaaatcctaa cttcattatt tttaatcgga atttgctcaa       120
     actttcactg acttgtttct ctcatttttc tactcctatt taaactaact taatttcagg       180
     gtggactttc cctttaaagc ctcgttacga attatttcat tcaccg                      226
//
ID   CR1-2_SP    repbase; DNA   ; SPU   ; 1128 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a partial consensus
DE   sequence.
XX
KW   CR1 superfamily; CR1-2_SP; non-LTR retrotransposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-1128
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-2_SP, a family of CR1 non-LTR retrotransposons from the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 218-218 (2004).
XX
CC   [1] (Consensus)
XX
CC   CR1-2_SP is a family of CR1 non-LTR retrotransposons. The
CC   consensus sequence represents the 3' terminal portion of the
CC   autonomous CR1-2_SP retrotransposon. It encodes the C-terminal
CC   portion of reverse transcriptase. The 3' terminus is composed
CC   of the (TCAAT) microsatellite.
XX
SQ   Sequence 1128 BP; 356 A; 161 C; 139 G; 470 T; 2 others;
     gtgtcttttg tatccgataa caatattgaa aatttgattc ttgattttam taatgaatta        60
     ttgaaaataa attcatggtt gatctctaat aaattaattg taaatactav aaaaaactca       120
     ctatatgatc ttttctaata tgtttatcga tcgtgacacg ttggttgttt ccttaaatga       180
     taatgtaatt aatcgttgta gctccctgaa atttttaggt gtaacaattg acagtaaatt       240
     atcttggaag gagcacattg atgttatctg cacgaatatt tctaaaggta taggtatttt       300
     aaataaaatt aaacattttc cttcaaatat tttgattatg atttataatg ccattatatc       360
     tccttatttt aattattgta accttgcctg gggatcctca actgatcatg caatgagaag       420
     attattatgc ttacagaaaa gagctattcg tttagtctta catgccgatt attttgctca       480
     tactaaacct ttatttctaa aattaaaact tttgaatgtc ctagatcttt gtaattatag       540
     ttttgcaata tttatgtact tatgttttaa taatttcata ccaattagtc tttccagcaa       600
     attttgtctt aattctgcat tacattcata taatactcga agttcttcta attttcattt       660
     aaataaaata agactaaata taactaagaa atcaatattt tttaaagggc cacaattgtg       720
     gaataatata cctcaagata taaaatctag tccatcaatt aacgttttta aaaggagata       780
     taaatcattt ttaatccaac aaaataaata aagattgatt atgtacacgg tctggttttt       840
     gttttgtttt tgtccccccc ccccccccct acttttaggt tttttttttt tttttttttt       900
     ccttctcaaa caacaatata atactgtatt atactttatt actgttttgg tggcagcacc       960
     aataaagcct ttggctttcc tagctgtctc cacattcata tatatttttg ttgttgtatt      1020
     gtattgtaaa tgtttctctt taacttgtac gctatgtttt gtattttata tgtttgttat      1080
     gatgttttta tgatgaatga aataaagatc aattcaattc aattcaat                   1128
//
ID   CSP2090     repbase; DNA   ; SPU   ; 167 BP.
XX
AC   J01187;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2090.
XX
KW   CSP2090; Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-167
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01187; Positions       1     167.
XX
SQ   Sequence 167 BP; 44 A; 36 C; 36 G; 51 T; 0 others;
     aattcgggat caaaaccgtg tcgatgtgct atattagtgc ccttttaggg gttcctgact        60
     gacctaaagg tttataatta tcattgaagc atgagctaaa tccaggattt tgtttcagaa       120
     tctgaggcct gtcttcatca gctcgagatt gccaaataac ccgcccg                     167
//
ID   CR1-19_SP   repbase; DNA   ; SPU   ; 3570 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-19_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; CR1-19_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-3570
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-19_SP, a family of non-LTR retrotransposons from the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 77-77 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-19_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-19_SP are ~3% divergent form the consensus sequence.
CC   The consensus sequence is incomplete due to 5' truncations of
CC   CR1-19_SP elements upon their retrotranspositions.
CC   CR1-19_SP encodes a 998-aa protein (pos. 295-3288) composed of
CC   the endonuclease and reverse transcriptase domains. The 3' terminus
CC   of CR1-19_SP is composed of the (AACTTG) microsatellite.
XX
FT   CDS           295..3288
FT                 /product="CR1-19_SP"
FT                 /translation="MPESTVNSIINVHSFVEFLSPRNGENDFYGPSHGSY
FT                 TCNEFNDLVNDSNDGLFSILHINCRSLSKNYDNISTFLSSLTVQFTAIAL
FT                 TEIWIKEYNSYYDIHNYTLVLKGRQNKKGGGIGFYVRNDVKFNRRLDLDI
FT                 NTPYIESLFIEVVTANKSAILGVVYRPPDQPIQSFLESVENVITTVNTEN
FT                 RIFYMIGDYNINLFKVNCQSHVKDFIEMFMAVGMYPLVHGPTRVVNNSIS
FT                 LIDNIFTNNLENCSSGTILTDISDHFPIFCIYSQSTQTVTETCITMKRQF
FT                 SAKNINTFITNIGNTHWILKENDANSSYDCFLKQFQHVYEICFPMKCQSK
FT                 KKKRFDKPWFNDELRQLNKKKSLYYKKYLNNRTAYRLAAYKKCRNKLTNR
FT                 IKYVKYKYFKQSFVDAKGDTKQTWKIINGLLGTKSKKNEIPSTLQYNNET
FT                 IDYDTDICESFNEYIINIGPKLTSTLDIPTGDFKQYLNKMNLLLFFYFFF
FT                 TPVTPREIINIVDKLKSNKCSGFDSVDVKMVKRVIHLICYPLCAIFNSSL
FT                 ETGIVPDQLKIAQIIPIFKSGTKTEMSNYRPISLLPVFSKILERAVYNRL
FT                 YSFLNLHNILNNSQFGFRTGHSTSSALADFTCQVSQVFDKSEVMMGLFLD
FT                 LSKGFDTLDHNIILAKLFNYGIRGVLLNWFKNYLSNRKQFVKIKVNTSSI
FT                 QTVVCGVPQGSILGPLLFILSINDMCNISDKLKYILFADDTSVFMSHKNI
FT                 QSLQQDFGNEINKLLHWLSLNKLILNVNKTNYMVFTKQQKIDFNEVDLQV
FT                 NNHEFQRVSVNKFLGIEIDSKLTWNEHTGAVCNKISKNTGILNKLRFLPK
FT                 CVLRILYNTLILPHLYYCSEVWAMTSQTNLNRILKMQKKAIRVISNSHYR
FT                 AHSKPIFYKLKLLNVFDICEYHIAVFMYLCRNESLPCALLKYFNLNSTFH
FT                 DYETRNASNFHLPQIKTTLMKKSISFDGPKIWNSIPINIRNCKSLQTFKR
FT                 KYKMYLIESYVL"
XX
SQ   Sequence 3570 BP; 1226 A; 550 C; 528 G; 1266 T; 0 others;
     accagaaggt gttagctgca tggactcgtg atggtatgat tattgcctca attcaagcct        60
     ctggtggaaa atcgacctct aaagttatac gttcagatat cgacctcgaa aacctttgat       120
     agttatgtca cgttagcgat attacgaacg atcgagctga cattttaatg acttatattt       180
     ctccctggag tcagaagttt tttacatttt atctttttgg atttttctaa tactcgaact       240
     tttaaatgta aaataccttt tgtatttcta atttgttttt tgtatactgc ttgtatgcct       300
     gaaagcactg taaattcaat tattaatgtt cattcgtttg tggaattctt aagcccgaga       360
     aatggagaaa atgattttta tggaccctct catggatctt atacatgcaa tgaattcaat       420
     gacctcgtta atgattcgaa tgatggctta ttttcaatct tacatatcaa ctgccgaagt       480
     ttaagtaaaa attatgataa cattagtact tttcttagtt ccttaacagt tcaattcaca       540
     gctattgctt tgactgagat atggattaag gagtacaatt cctattatga tattcataac       600
     tatactcttg tacttaaagg tcgacagaat aaaaaaggtg gtggaattgg tttttatgta       660
     agaaatgatg tgaaatttaa tcgtagactt gatcttgata taaatactcc atatattgaa       720
     tcgcttttta ttgaagttgt tactgctaat aaaagtgcaa ttctcggagt tgtttataga       780
     cctcctgatc aacctataca aagttttctt gagtcggttg aaaatgttat tactactgta       840
     aacactgaaa atagaatatt ttacatgatt ggggattata atataaacct atttaaagta       900
     aattgtcaat ctcatgttaa agattttatt gaaatgttta tggcagttgg tatgtaccct       960
     ctagttcatg gtccaacgcg tgttgtaaat aactcaatct ctctcattga caatatcttc      1020
     acaaacaacc ttgaaaattg ttcatctggc acaatcttaa cagacattag tgatcatttc      1080
     ccaatattct gcatttattc tcaaagtact caaaccgtaa cagaaacgtg tattacaatg      1140
     aaaagacaat ttagtgcaaa aaatataaat acttttatta cgaatatcgg caatacgcat      1200
     tggattctga aagaaaacga tgctaattca agttatgatt gttttctaaa acaatttcaa      1260
     catgtatatg aaatatgttt cccaatgaaa tgtcaatcta agaagaaaaa acgatttgat      1320
     aaaccttggt tcaatgatga attaagacag ctgaacaaaa agaaaagctt atattacaag      1380
     aaatatttga ataatcgtac tgcgtataga cttgctgcat acaaaaagtg tagaaataag      1440
     ttaacaaata gaattaaata tgtaaaatat aagtatttca aacaaagttt tgtagatgct      1500
     aaaggtgata ctaaacaaac atggaaaatt ataaatggtc ttttaggcac aaagtctaag      1560
     aaaaatgaaa ttccgagtac tttacaatat aataatgaaa ccattgatta tgatacagat      1620
     atatgtgaat cttttaacga atacattatc aatataggtc caaaattgac atcaactctt      1680
     gatattccta ctggcgattt taaacagtat ctgaacaaaa tgaatctact gctttttttt      1740
     tatttttttt ttactccagt cactccaaga gaaataataa acattgtaga taaattaaag      1800
     agtaataaat gtagtggttt tgacagtgtt gatgttaaga tggttaaaag agttatacat      1860
     ttgatctgtt atccattatg tgcaatattc aattcttcat tggaaactgg gatcgtacca      1920
     gatcagctga aaattgctca aattattcct atatttaaaa gtggtactaa aactgaaatg      1980
     tccaattata gacctatatc actacttcca gtattctcta agatattaga aagagctgtg      2040
     tataatcgct tatattcctt tttgaatctg cataatattt tgaataattc acaatttggt      2100
     tttcgaacag gccactccac atcctctgct ttagctgatt ttacatgcca agtttctcaa      2160
     gtttttgata aatcagaagt catgatggga ttgtttttag acctcagtaa aggctttgat      2220
     actctagatc ataatattat acttgcaaaa ttattcaatt acggaatacg tggtgtgtta      2280
     ttaaattggt ttaagaatta tttatcaaac agaaaacagt ttgtcaaaat taaagttaat      2340
     acttcgtcta tacaaacagt tgtgtgtgga gtgccacaag gctctatttt aggcccgctt      2400
     ttatttattc tttctattaa tgacatgtgt aatatatcgg acaaattaaa atatatctta      2460
     tttgcagacg acaccagtgt gtttatgtct cataaaaata ttcaaagttt acaacaggac      2520
     tttggtaatg aaataaacaa gctattacat tggctttctt tgaataaatt aattttgaat      2580
     gttaataaaa ctaactacat ggtatttaca aaacaacaaa aaatagattt taatgaggtt      2640
     gatcttcagg tgaataatca tgaattccaa cgtgtatctg taaacaaatt cctcggaata      2700
     gaaattgatt ctaaacttac atggaatgaa cacactggtg ctgtctgcaa caagatctca      2760
     aaaaatactg gcattctaaa caaacttaga tttctaccaa aatgtgtttt aagaatttta      2820
     tataatactt taattcttcc tcatttatat tactgttctg aagtatgggc catgacaagc      2880
     caaaccaatc tgaataggat actcaaaatg caaaagaaag ccatccgggt aatttcaaat      2940
     tcacactaca gagctcattc gaaacctata ttttataaat taaagcttct caatgtattt      3000
     gatatctgtg aatatcatat tgcagtcttt atgtacttgt gtcgaaatga atctttacca      3060
     tgtgcacttc taaagtattt taatttgaat tcgacttttc atgattatga aactagaaat      3120
     gcatctaatt tccacttacc tcaaattaaa acaactttaa tgaaaaagtc aatatctttc      3180
     gatggtccaa aaatttggaa ttccattcca ataaatataa gaaattgcaa aagtcttcaa      3240
     acttttaaac gaaaatataa aatgtattta attgaatcct acgtgctata actcaccagg      3300
     ctctttaccc cccccccttg ttttccctct ttttgtcatg cttccaatcg tacaacattt      3360
     aatttacctt ttatttatat tatactgagg gatgggctct agcataagga ccatactcct      3420
     ttttagctca tcccttcact cccattatgt tatgttattt tgttgttgtt gaatgtatga      3480
     tattttatgt gtgattattc cgcatttaat tgtatatgtt cttgtatttt taatgatgag      3540
     tgtaaataaa cgaacttgaa cttgaacttg                                       3570
//
ID   piggyBac4_SP repbase; DNA   ; SPU   ; 733 BP.
XX
AC   .
XX
DT   07-2004 (Rel. 9.11, Created)
DT   07-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Nonautonomous family of piggyBac DNA transposons - a consensus
DE   sequence.
XX
KW   piggyBac; DNA transposon; Interspersed Repeat;
KW   nonautonomous DNA transposon; piggyBac superfamily; piggyBac4_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-733
RA   Kapitonov V.V., Jurka J.;
RT   "piggyBac-N4_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(11), 309-309 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors over 1000 copies of piggyBac-N4_SP elements
CC   . They are characterized by the TTAA target site duplications
CC   and imperfect 200-bp terminal inverted repeats.
XX
SQ   Sequence 733 BP; 259 A; 119 C; 127 G; 226 T; 2 others;
     aggaaaccta aacccaaaga ataagtgtag gtattctgaa aaatgagatg tattcctgcc        60
     ctttgatgta caatattcct tacgaaaatg tacaagatat atataaatga agatattcct       120
     ggcatgatgt gatgcctttc agcatgacat gggcgcagcc attttcttga aaatgtgacg       180
     tacctgttga agttgtacat gtatcatgca ccaagcttta gttggaaaga atttttaaat       240
     caataacgaa acctttactt ttcaatgaaa aaaaataata actgagatga tagaaattat       300
     attaggtgaa aaataaataa caggggmaca attgtaacaa aattcattta taaatactac       360
     actatagcag ttgacaaatc tatttcattt atgagaaacc ttcaccccag aagagcacta       420
     acttatttat gcaatttgcg ttctggcaat tatagtacaa aggataatag caggtgaatg       480
     aaatgcttca tcaccacaca cgtctgggaa agaagcatcc ataaatttga atacatttac       540
     ttgataaacg acttcgcata gtacgtcaca ttatcaagaa aatggcgatg cccatgtcgt       600
     gctgagaaac tgtactttat ttttgcttta tacctctctc atacactttg gtggggaatc       660
     ttgtagattt atgggcaata atataataaa tctctcagaa taagtaaagt tattwcttgg       720
     ggttcggttt cct                                                          733
//
ID   CR1-17_SP   repbase; DNA   ; SPU   ; 3439 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-17_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; CR1-17_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-3439
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-17_SP, a family of non-LTR retrotransposons from the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 75-75 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-17_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-17_SP are ~2% divergent form the consensus sequence.
CC   The consensus sequence is incomplete due to 5' truncations of
CC   CR1-17_SP elements upon their retrotranspositions.
CC   CR1-17_SP encodes a 1004-aa protein (pos. 110-3121) composed of
CC   the endonuclease and reverse transcriptase domains. The 3' terminus
CC   of CR1-17_SP is composed of the (TTGAA) microsatellite.
XX
FT   CDS           110..3121
FT                 /product="CR1-17_SP"
FT                 /translation="MSCRARFVQCLNEKHVSVSTLREFLSPSDPQSTNNF
FT                 TQSHYTPDEFNTFVSQKLLDKDVNNKLSFININCRSLQHNFDALSVLMMS
FT                 LRMQVSIIGVSETWLRDENSQYSLCNFDHYEFVGNNKRLGRGGGVGIFIR
FT                 KDINFKRRTDLDINESFLESIFIEIEHFNSNILICVMYRPPSQPVDDFLM
FT                 SLVNVFNVVNVEKKLFYLMGDFNIDLLNVGKVQSVNDFLNILMLHSMIPL
FT                 INEPTRVTDRSSSLLDNIFTNDSCHIYSGILLTDISDHFPVYCICDTDIP
FT                 KSSCETDFYKRDLNENNIRMYFLQLRYSTEWYLSSDVNSSYNTFVFKFTK
FT                 LYNLCFPVKLVRIKYKRKNKPWITNEIIKLSKIKCRLYKLLIKNPNVYRK
FT                 EVYRKIRIKLNNKIKIEKKNYFKKSFKDSTGNMKKTWDIINKAMGKKCKM
FT                 TNIKEINKNDTVITDKNDISNNFNEYFVDVGYNLNCKFDCFDDSECIKCI
FT                 DMNDKSMFFKLVTSSEIEDIVKKLKNNTSAGYDDVDVKIVKRCIYLLSNH
FT                 LCTIFNQCLEQGVFPDKMKIAKVIPVFKNGVSETMSNYRPISVLTVFSKN
FT                 LEKCMYNRLYAFLTKCNIINNNQYGFRAGHSTSCAIIDFIHKVASAIDNN
FT                 EVMLGLFLDLSKAFDTLDHHILLVKLYQYGIRGIGLDLFKSYLLHRHQFV
FT                 SIANVKSNYQEIKCGVPQGSILGPLLFILYINDLPSVSRILKSILFADDT
FT                 SIFLSHQNIQSLQDIFNREIKLINTWFSVNKLSINISKTHYMIFTNKKCD
FT                 TDSIIIRLCNTEIKQVSSLKFLGITIDNKLKWTDHVNAVCNVLSKNIGVM
FT                 YKLKSFPKCILKMIYNSLILPFLYYGILAWGNAHETHIRKVILLQKRAIR
FT                 TICHTSYLAHSHPLFKEMKILNFTDMYNYQCAIFMFQCYLQILPKSLLKL
FT                 FILNCNIHHYSTRNAENFHLPLVHTTSYKRTVIFNGPCLWSTIPRKIREL
FT                 KFVNTFKRKYKKYLMDVY"
XX
SQ   Sequence 3439 BP; 1180 A; 427 C; 522 G; 1310 T; 0 others;
     tccatttaag ttcttcttta cattttgtac atagttgttg ttgttgtttg ctttttacta        60
     ctttgtttta agtgtagaat tcatattcct ttgctttttt ggttttcaaa tgtcgtgtcg       120
     tgctcgattt gttcaatgtc tcaatgaaaa acatgtatct gtatcaacct tgagagaatt       180
     tttgtcacca tcagaccctc aaagtactaa taacttcact cagtcacatt atacaccaga       240
     tgaattcaat acgtttgtat cacagaaatt acttgataag gatgtcaata acaaattatc       300
     atttattaat attaattgta gaagtctcca acataatttt gatgcattgt ctgtacttat       360
     gatgtcatta cgtatgcaag tttcaattat tggtgtttcg gaaacatggc taagggatga       420
     aaattcgcaa tattctctgt gcaatttcga tcattatgaa tttgtgggaa ataataaaag       480
     acttggacgt ggaggaggtg ttggtatttt tattcgcaag gacattaatt ttaaacgccg       540
     cactgacttg gatattaatg aatcattttt agaaagtatt tttattgaaa ttgaacattt       600
     caattcaaat attttaatat gtgttatgta taggccaccc agtcaaccag tggatgattt       660
     tttaatgtct ctcgttaatg tttttaatgt tgtaaatgtg gaaaagaaat tattttattt       720
     aatgggcgat tttaatattg atttattaaa tgttgggaag gttcaatctg ttaatgattt       780
     tttaaacatt ttaatgctac attctatgat tcctttaata aatgaaccaa ctcgtgttac       840
     tgacagatct tcatcgttat tagataatat ttttacaaat gattcttgcc atatttattc       900
     tggaatatta ttaactgaca tttctgacca cttcccggta tactgtatct gtgatactga       960
     tattcccaaa agttcctgtg aaactgactt ttataaacgt gatttaaatg aaaataatat      1020
     tagaatgtac tttttacaat tgcggtactc aactgaatgg tatctatcta gtgatgtgaa      1080
     tagtagttat aataccttcg tttttaaatt cacgaaactg tataatttgt gtttccctgt      1140
     gaaattagtt cgtataaaat ataagcgtaa aaataaacct tggattacaa atgaaattat      1200
     aaagttgagt aagataaaat gtagactata taagttgtta atcaaaaatc ctaatgttta      1260
     tagaaaagaa gtatatagga aaattcgtat aaaattgaat aataagatta agattgaaaa      1320
     aaagaattat ttcaagaaaa gttttaaaga ttctacagga aatatgaaga aaacgtggga      1380
     tattatcaat aaagcaatgg ggaaaaaatg taagatgact aacattaaag agattaataa      1440
     aaatgataca gtgataactg ataagaatga tatttctaat aatttcaatg aatattttgt      1500
     agatgtgggg tataatttga attgtaaatt tgattgtttt gatgattcag agtgtatcaa      1560
     gtgtattgat atgaatgaca agtctatgtt ctttaaactt gtaacaagtt cagaaattga      1620
     agatattgtt aaaaaactaa aaaataatac aagtgctgga tatgatgatg ttgatgttaa      1680
     aattgtgaaa agatgtatct atttattaag caatcattta tgtacaatat ttaatcaatg      1740
     tcttgaacaa ggagtatttc cagataaaat gaaaatagca aaagtgatac ctgtttttaa      1800
     aaatggagtg tctgaaacaa tgtctaatta tcgccctata tccgttttaa cagttttttc      1860
     aaaaaattta gaaaaatgta tgtataatag attatatgct tttttaacta agtgcaatat      1920
     tattaataat aatcagtatg gttttagagc tggacattct acttcatgtg caataattga      1980
     ttttattcat aaggtagctt ctgcaataga taataatgaa gttatgcttg gattgttttt      2040
     agaccttagt aaggcttttg acacgttaga ccatcatata ctcttggtga aattatatca      2100
     atatggaata aggggaatcg gtttagatct ttttaaaagt tatttgttac atcgtcatca      2160
     atttgtttct attgctaatg taaaatcaaa ttaccaagaa atcaaatgtg gagtacctca      2220
     aggatccata ttaggcccat tactgtttat tttatatatc aatgatcttc ctagtgtgtc      2280
     gagaatttta aaatcaattt tatttgccga cgatacaagc atttttttat cccatcaaaa      2340
     tatacaatca cttcaagata tatttaatcg agaaattaag ttaataaaca catggttttc      2400
     tgtaaataaa ttgtcaatta atataagtaa gacacattat atgattttta ctaataaaaa      2460
     atgtgacact gattctatta ttattcgttt gtgtaataca gaaattaaac aggtctcttc      2520
     acttaaattt cttggcataa ccattgataa taagttgaaa tggactgatc atgtaaatgc      2580
     tgtttgtaat gtattatcga aaaatattgg tgttatgtat aaattaaaat catttcctaa      2640
     atgtatattg aagatgatat ataacagttt gatattacca tttttgtatt atggaatact      2700
     tgcatggggg aatgcacatg aaacccatat taggaaagta attttattgc aaaaacgtgc      2760
     aattcgtact atttgtcata cttcttatct tgcccattca catccacttt ttaaagaaat      2820
     gaaaatattg aattttactg atatgtataa ttatcaatgt gcaatattta tgttccagtg      2880
     ctatttacaa atccttccca aatcactttt aaaacttttt atactaaatt gtaatataca      2940
     ccactatagt actagaaatg ctgagaattt tcacttgcca cttgtacata caacttcata      3000
     taaacgtaca gtaatattta atggaccttg cttatggagt actatacctc gtaaaatacg      3060
     tgaattgaaa tttgttaaca ctttcaaacg taaatacaaa aaatacttga tggacgtata      3120
     ttgatattag ctacagattt taacggttgt taaattcatt atattttaca tgtaattgtt      3180
     gtttgtttca ctttttatta cagcttaact ttttatattt gattaattgg tcagccgcat      3240
     acaaggacca cctcctttct ggctgctacc agcattagca atttcctttg tattattcat      3300
     gtttgtaaat tgattctgtg tatttctgtg tttatctatg ttagtaattg taattgtgtg      3360
     aaactttgta tactgctttt gttttaccct gtatgttttt tattgcttgg caaaataaat      3420
     tgaattgaat tgaattgaa                                                   3439
//
ID   piggyBac3_SP repbase; DNA   ; SPU   ; 188 BP.
XX
AC   .
XX
DT   07-2004 (Rel. 9.11, Created)
DT   07-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Nonautonomous family of piggyBac DNA transposons - a consensus
DE   sequence.
XX
KW   piggyBac; DNA transposon; Interspersed Repeat; CS2111;
KW   nonautonomous DNA transposon; piggyBac superfamily; piggyBac3_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-188
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "Repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
RN   [2]
RP   1-188
RA   Kapitonov V.V., Jurka J.;
RT   "piggyBac-N3_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(11), 308-308 (2004).
XX
CC   [2] (Consensus)
XX
CC   The genome harbors over 10,000 copies of piggyBac-N3_SP
CC   elements that are ~87% identical to the consensus sequence.
CC   These elements are characterized by the TTAA target site
CC   duplications and imperfect 15-bp terminal inverted repeats (4
CC   mismatches). Preliminary classification, based on the TTAA
CC   target site duplications, - piggyBac superfamily [2]. A
CC   portion of piggyBac-N3_SP (pos. 182 -97) is 86% identical to a
CC   portion of the CSP2111 repeat [1]. The second portion of
CC   CSP2111 (pos. 1-62) is a part of ankyrin-encoding unit. In the
CC   sequenced genome, these two portions are dispersed
CC   independently.
XX
SQ   Sequence 188 BP; 50 A; 42 C; 51 G; 45 T; 0 others;
     agcctatctg cactagtttg gccaggaggg attagacctc cctgcgtggt cactgacagg        60
     tggttatctc atcaaatcag ctctcaatta acataagaaa aaggggatca tgggggacca       120
     acgggtaccg cttaggcatt gtttgctata tagagggcgc aagtagctac aagtagtgca       180
     gtcccgct                                                                188
//
ID   CSP2112     repbase; DNA   ; SPU   ; 257 BP.
XX
AC   J01196;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2112.
XX
KW   CSP2112; Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-257
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01196; Positions       1     257.
XX
SQ   Sequence 257 BP; 70 A; 54 C; 61 G; 72 T; 0 others;
     aattctaaat cctgaaatgt catgcgctct cttatctcac cactggtcaa tagttgaaga        60
     ttagcgcata acttttcggc ggcttggagc atggggtcaa aggagagcgg cttgattcca       120
     gtccttctct atcacgtccc ataaggaccg gtattcataa tacgagaaga gggttggtat       180
     tcataatacg agaagagggt cgctgttcat aatgcaatat cggggtcgtg tcaaattttc       240
     aaatttcgag accaccg                                                      257
//
ID   SPRP2       repbase; DNA   ; SPU   ; 247 BP.
XX
AC   K01794;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus histone H1-H4 spacer repeat.
XX
KW   Repetitive sequence; SPRP2.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-247
RA   Vitelli L., Weinberg S.E.;
RT   "An inverted sea urchin histone gene sequence with breakpoints between
RT   TATA boxes and mRNA cap sites.";
RL   Nucleic Acids Res 11, 2135-2153 (1983).
XX
DR   GenBank; K01794; Positions     247       1.
XX
SQ   Sequence 247 BP; 50 A; 64 C; 71 G; 62 T; 0 others;
     cggacgaccc gggactgtct cctcccacgt acgcaacaat gccttatatt gatggcgttg        60
     ccgagcctca accggattgc agcgagtatt gttacaccat tgcggacttg ggtgacgaga       120
     ttcggcatca ttcggtatgc gggactggag tgcggagact ccccattcga gtgcgccccc       180
     tcgtggcgag tattcgctag cattattaca tgcatttatg tagagaggcc tgtgttgaat       240
     gctcgag                                                                 247
//
ID   CSP2034     repbase; DNA   ; SPU   ; 498 BP.
XX
AC   J01186;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   S.purpuratus repetitive sequence csp2034.
XX
KW   CSP2034; Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-498
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01186; Positions       1     498.
XX
SQ   Sequence 498 BP; 116 A; 101 C; 75 G; 206 T; 0 others;
     aattccattt cccgtttacg tgtaatcgcc atgggaaatg tgttggtata tcggtaacgc        60
     acttgacttc caagctcgag atacctggtt tgagtccggg tgtctccaac aatttttgtc       120
     ttcatttctt ttttcttttt gacctttcac tgtaccatct cctttgatta ttaaaacatt       180
     attcgcaaat aatgtaataa acaaccgtat ttaccttatt attacccttt tttccactta       240
     atccattatt tagtgcgtgt agtccctatg ggggatgact tttttttcaa atctagattc       300
     tacattcctg tcttttgcga gcaatatcgc cgttatttct gcttggattt agttgatttt       360
     tgagtatgtt gtagctgaga ctatatgcta tctaaatcat tcctcatttt ttcaattaga       420
     tatcaggatc acgcttatga tcatgatcat tatcatctca tttctcactg agtattattt       480
     atatgtctgt ctctcccg                                                     498
//
ID   Harbinger-N2_SP repbase; DNA   ; SPU   ; 344 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   A family of nonautonomous Harbinger DNA transposons - a consensus
DE   sequence.
XX
KW   Harbinger; DNA transposon; Interspersed Repeat; Non-autonomous;
KW   Harbinger-N2_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-344
RA   Kapitonov V.V., Jurka J.;
RT   "Harbinger-N2_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 5(4), 84-84 (2005).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors ~1000 copies of Harbinger-N2_SP
CC   elements that are ~90% identical to their consensus
CC   sequence. These elements are characterized by 3-bp target site
CC   duplications (TwA) and imperfect 33-bp terminal inverted repeats.
XX
SQ   Sequence 344 BP; 115 A; 56 C; 51 G; 122 T; 0 others;
     ggccattaaa aaaaatatac atgtttagcg tccccgcccg cttccttttt gggggccgcc        60
     tcctattttt ttttttgaaa ttttttgaaa aatttttttt tttttttttt tttttttttt       120
     ttgaaagaaa aaaaacatga aaaacactgc taaaatggat ctatttctga ttttaaaaaa       180
     taaaaaaaaa attgtcggcg gccatcttga aaaatagccc gactgtcagg gaaaatgtac       240
     cgagcggcca ttttgaaaga aaataaaaag aaaaaaaaag ggcctcctcc ttcctatttt       300
     tcaaaaaaac aggacgctaa acatgttttt ttttttattt ggcc                        344
//
ID   CSP2111     repbase; DNA   ; SPU   ; 155 BP.
XX
AC   J01195;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2111.
XX
KW   CSP2111; Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-155
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01195; Positions       1     155.
XX
SQ   Sequence 155 BP; 40 A; 45 C; 27 G; 43 T; 0 others;
     aattcggatt aacctcggct ccttgactga tcagatattt ggtgacatca agatgaccac        60
     agccccactg cactacttat agcctattgc gccctctata tagcaaacaa tgcctaatag       120
     gtgaccattg gtcacacatg gtcccctttt tcccg                                  155
//
ID   CR1-11_SP   repbase; DNA   ; SPU   ; 3780 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-11_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; CR1-11_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-3780
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-11_SP non-LTR retrotransposon from the sea urchin genome.";
RL   Repbase Reports 5(4), 69-69 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-11_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-11_SP are ~3% divergent form the consensus sequence.
CC   The consensus sequence is incomplete due to 5' truncations of
CC   CR1-11_SP elements upon their retrotranspositions.
CC   CR1-11_SP encodes a 986-aa protein (pos. 428-3385) composed of
CC   the endonuclease and reverse transcriptase domains. The 3' terminus
CC   of CR1-11_SP is composed of the (CAAA) microsatellite.
XX
FT   CDS           428..3385
FT                 /product="CR1-11_SP"
FT                 /translation="MNSHAHTPDILVDDINESKYYTPQEFKNSFSYKPDN
FT                 ISLLHINSRSLNKNFEYVENLLHSLNNFAFSVIGISETWLHQNSPDMFNL
FT                 PNYKLIRADRKGRRGGGVAFYITQNLNFKIRSDIKLTQAESLFIEINNSN
FT                 VKNVIIGLIYRPPDSNCELFCDELDFYLHKIGDENKHNFILGDFNINFSP
FT                 SSDNSNSTNCMQLMHSYGFFSIINKPTRINPHSSTQIDNIFSNVHNNKTI
FT                 GGILCSEVSDHLPIFLTCECKLSCSKSFDELYRKESKRNIELLKQDLFFE
FT                 GWAEVYNVNDVNTAYKHFSNKLQYYYEKNIPLGKMSNKRNKPRNPWITKG
FT                 LLKSIQTRNRLYKLHLRNPTDTNLNTYKIYRNKLTKLIRTSRRLHFSNKI
FT                 KKASSNTTATWKIIKEVMGKKTNPPPTDNITLNGTKIHDPSLHANSFNSF
FT                 FTNIGPELASKINRTHAHFKDYLSNQNQESLFLNPTNPSEIINITQSLNN
FT                 SKSHGFDRISMSLLKEIMYPLAKPLTHIFNHSLSQGVFPDLLKIAKVNPI
FT                 LKKDDPHEISNYRPISLLPSISKVLEKIVHNRLHKFITKHKILNSNQYGF
FT                 RKNYSTDLALIQIYDKITSAIANKEHVIGIFCDLSKAFDTLNHAILLSKL
FT                 SHYGIRGQPLLWFKDYLTNRRQYVTFNSYDSDPLLIQCGVPQGSILGPLL
FT                 FLLYVNDIINTSPLLSFILFADDTNIFYSHKDLNSLNNTLNYEINKVSDW
FT                 FKSNKLSLNTKKTHFMYFKHHSHNTETPIYIKIDGMLLEKKTNSKFLGVL
FT                 IDETLTWNDHLHQVTMCISKSIGIISKLKFLLPHATLFLLYNSLVLPYIT
FT                 YCNSVWANCGSTKINSIFKLQKKAIRICTGSHFLAHTDPLFYKLKTLKIF
FT                 DLNTTQVAVIMFKYINNLLPPSFDNMFRFNNSVHSYSTRISGNFHLTNPK
FT                 LSITHKSVRHSGPDIWNDFPDNIKSCSTIYSLKATLKRQIIQSYAPHSLN
FT                 "
XX
SQ   Sequence 3780 BP; 1280 A; 774 C; 484 G; 1242 T; 0 others;
     taacatgcat acatttttct cctccgcaca acaaatctct ttgttttgca aaactcctgt        60
     gtcaatcaca gaatccattg ttatagactg aactagtttt gatgagcggg aatgtcaaat       120
     ccctcttttc catttaataa tcgtactccg atttgtcatt attgttatca agcattttgt       180
     ttcttcccag cccctctatt ttgcgtgtca aaaatacacc ctttactcgg gcggtcgggc       240
     tccgctctgt tgctcctaag caattattgt aactgtgacc aagatgggtc ttattgtatt       300
     ttcatttgta ttatattttg aagttacccg cacacttgca cttcgtacac acacaaacgc       360
     accagcatca cacatgcagt tgttcatcct ccaaattttc ggtactttac ataatacgta       420
     tcgttaaatg aattcgcacg cgcacactcc cgatattctt gtcgacgata taaacgagag       480
     caaatactac acaccccaag aattcaaaaa ttcattttct tacaaaccag acaatatttc       540
     acttttacat ataaactcca gaagtctgaa caaaaatttc gaatacgttg aaaacctttt       600
     acactcttta aataattttg cattttccgt cattggaata agtgagacat ggttacatca       660
     gaattctcca gatatgttca atttgcctaa ttataagttg attagggcgg accgcaaagg       720
     aagaagaggt ggcggtgttg cgttttatat tacacaaaac ctaaatttca aaatccgttc       780
     cgatattaaa ctaacacaag cagaatcttt atttatcgaa attaataact caaatgtcaa       840
     aaatgtcatc ataggtttaa tttatagacc ccctgactct aattgtgaat tattctgtga       900
     cgaactggat ttttatcttc ataaaatagg ggatgaaaat aaacacaatt ttatccttgg       960
     tgactttaac atcaacttct ccccctcatc tgataacagt aactcaacca attgtatgca      1020
     gttgatgcat tcatacggct ttttttcgat tattaataaa cccaccagaa taaatccaca      1080
     ttcatcaact cagattgaca atattttttc aaacgtacat aacaacaaaa ccatcggtgg      1140
     aatattgtgt tctgaagtgt ccgatcacct acccatattt ttaacttgtg aatgcaaact      1200
     atcttgcagt aaatcatttg atgagcttta tcgcaaagaa tccaaacgta atatagaatt      1260
     gctgaaacag gatttatttt tcgagggatg ggctgaggta tataatgtaa atgatgtcaa      1320
     tactgcatat aaacatttta gtaacaaatt gcaatattat tatgaaaaga atattccttt      1380
     aggcaaaatg agtaataagc gaaataaacc caggaatcct tggataacga aaggtttatt      1440
     gaaatcaata caaacacgca atcgcctcta caaattacat ttacgcaatc caactgacac      1500
     taacctaaac acatataaaa tttatcgaaa caaattaaca aaactaatcc gtacatcccg      1560
     tagattgcat ttttctaata aaataaaaaa ggccagttca aacactactg caacttggaa      1620
     aattatcaaa gaggttatgg ggaaaaaaac gaatccccca cccacggata atatcacatt      1680
     aaatggcact aaaatacatg atcctagtct tcatgcaaat tcatttaact cattttttac      1740
     gaatatcggc cctgaactcg ccagcaaaat taatagaact cacgctcact ttaaagacta      1800
     tctttccaat caaaaccaag agtctctctt tttaaatccg acaaatccta gcgaaattat      1860
     taacattacc caatctctta acaactcaaa atcccacggt tttgatagaa taagtatgtc      1920
     tctcctaaaa gaaataatgt atccacttgc aaagccttta actcacatat ttaatcactc      1980
     gttatcgcaa ggtgttttcc ctgatctatt aaaaatagct aaagtcaacc ccattctcaa      2040
     aaaagatgat cctcacgaaa ttagtaacta tcgtccaatt tccctacttc caagtatatc      2100
     caaagtctta gaaaaaatcg ttcataatag gctacacaaa tttatcacta aacacaaaat      2160
     actcaattca aatcaatatg gcttcagaaa aaattactca actgacttag cattaattca      2220
     aatttatgac aaaattacaa gtgccatagc taacaaagag catgttatag gtatattctg      2280
     tgacttgagt aaagcatttg atacgctcaa tcacgctatt ctactctcca aactcagtca      2340
     ttacggaatt cggggtcagc cactcttatg gtttaaagat tatttaacaa acagaagaca      2400
     atatgttaca tttaatagtt atgattctga tcctctttta attcaatgcg gtgttcctca      2460
     aggctccatc ttaggtccac tgttatttct tctttatgta aatgatatta tcaatacatc      2520
     cccccttctt tcttttatct tatttgccga tgatacaaat atcttttatt cccataaaga      2580
     ccttaattcg ttaaacaata ctttgaatta tgaaattaac aaagtatcag attggtttaa      2640
     atccaataaa ctttcactta atacaaaaaa gactcatttc atgtatttta aacatcattc      2700
     tcataataca gaaacaccta tatatattaa aatcgatggt atgctactag agaagaaaac      2760
     taattccaag tttttgggtg ttcttataga tgaaaccttg acttggaatg atcatttaca      2820
     ccaagttaca atgtgcattt ccaaaagtat tggaataatc tccaagttaa agtttcttct      2880
     accccatgca accttattcc tactatataa ttcgctagtt ctcccgtata taacatattg      2940
     taatagtgta tgggcaaatt gtggttcgac aaaaattaat tctattttca aactgcaaaa      3000
     gaaagccata cgtatttgta caggttcgca tttcttagct cacactgatc ctttattcta      3060
     taaacttaaa acactaaaaa ttttcgatct gaacactact caagtagcag ttattatgtt      3120
     taagtacatt aataatctgc ttccaccatc ctttgataac atgtttaggt ttaataattc      3180
     cgttcattca tactctactc gcatatctgg aaacttccat cttacaaatc ccaaattatc      3240
     aataacacac aaatctgtta gacattctgg cccggacatt tggaatgatt ttcccgacaa      3300
     cataaagtct tgttcaacca tctactcctt aaaagctaca cttaaacgac aaataataca      3360
     atcatatgct ccccactctt taaattagta taacaaaacc gtgacttatt tattctttat      3420
     catgcaactg cttactgcac ctgcacttgc accgcaccct cttgatcact cagtttttcg      3480
     aagagagtta tgtcgccaat tctttttacg aggccgccat ccatctccag cctaaccgct      3540
     cacgatggtg gtctcctgcg ttctaaatta cctctctaat ttattgaaaa tatttcatat      3600
     tatgttattg tatgcttcgt acatgtttat cgtatgatat aattgtacat gattttttat      3660
     ttaattactt ttgtaaacat tttattcatt gtatttgtta ttgttcgaat ttttgtactt      3720
     tgaatttgaa tttgtatatt tttgaacgca gaaataaaat caatcaaaca aacaaacaaa      3780
//
ID   Penelope-1_SP repbase; DNA   ; SPU   ; 1122 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of Penelope Non-LTR retrotransposons - a partial consensus
DE   sequence.
XX
KW   non-LTR retrotransposon; Penelope superfamily; Penelope-1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-1122
RA   Kapitonov V.V., Jurka J.;
RT   "Penelope-1_SP, a family of retrotransposons form the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 243-243 (2004).
XX
CC   [1] (Consensus)
XX
CC   The consensus sequence represents the 3' terminal portion of
CC   the autonomous Penelope-1_SP retrotransposons. It encodes the
CC   C-terminal portion of a reverse transcriptase. The genome
CC   harbors several hundred copies of Penelope-1_SP. The ~180-bp 3
CC   terminal portion forms often inverted repeats.
XX
SQ   Sequence 1122 BP; 313 A; 299 C; 250 G; 255 T; 5 others;
     ccacacagac cagtacatag cgtttgactc tcaccatccc atatcggtga agagaggtct        60
     agtgaaatgt ctatttgaca gagcttcacg cattgtgaca agtccacaac agccatgcaa       120
     agacggaccc gtgttcgcag tgccctgagt ctcaacggtt acccacgccg ttttatacac       180
     aataccaaga atagatcgtc ggaacccagg gatcagaagg tatacaagac attyacagtc       240
     ttgccgtaca ttgatggggt ctcccaacaa ctcaagcgcc gcctagagag ccatggcatt       300
     cgaacggttt tcagatcaga taccacccta cgtcaacaac ttacacgccc caaggatcca       360
     attcctccac acagacggga cggcattgtg tacaacatcc cttgtaaagg atgtgataga       420
     tcctacatcg gtgaaactgc ccgtccgata aaagaaagaa tcactgagca taagagggac       480
     gtcaggctcc gccgaactga caactcagcc gtagccgaac atgcttggga taaccagcat       540
     cadccagact gggacggggt tcagtgcctt tcccaagaac gacattggta cacacggagg       600
     gtaaaaraag ctatcaatat ccgtctcaat cctaataatt tcaacagaga caacgggatc       660
     gatatccccg aattttggat gcggacgata cgccgccatg acactcgccg tcctgccagc       720
     caacaacggt cgattccatt cagcagacgg cccgagccag cggncccgtt gattggttga       780
     gtaccgtatg cgtcggccaa taggcctggt gcatcagccg aaccagcggc cgaaccagcg       840
     gccttgttga ttggttgagc accgtgtgct tcgaccaata ggccttgtcc gttattgttc       900
     taattattga tcgaattatt gaccgctccg ccggtccacc cgtagagtat aaaagacgct       960
     tgcttacaat atattttatc acctgacgaa gtgttgcagc ggcacacgaa acgtcgtgat      1020
     cttttagatc ccttgttgac catacattgc gagacaaacg aatrtcacta gcgatattat      1080
     tttcgatact atatccgcaa tgagtaatat atttagcatt at                         1122
//
ID   TU1         repbase; DNA   ; SPU   ; 775 BP.
XX
AC   X00146;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus transposable element TU1 fragment.
XX
KW   TU1; transposon; Repetitive element.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-775
RA   Liebermann D., Hoffman-Liebermann B., Weinthal J., Childs G.,
RA   Maxson R., Mauron A., Cohen N.S., Kedes L.;
RT   "An unusual transposon with long terminal inverted repeats in the sea
RT   urchin Strongylocentrotus purpuratus.";
RL   Nature 306, 342-347 (1983).
XX
DR   GenBank; X00146; Positions     609    1383.
XX
SQ   Sequence 775 BP; 188 A; 231 C; 150 G; 206 T; 0 others;
     ggttccatga cacatgctcc gccgacgatt gctccgccga catttactcc gcaaaacgcg        60
     acaattgctc cgcgacattt gctccgcgac atttgctccg acgtcaaatg ctccgccgac       120
     agttgctccg ccgacagttg ctccgccgac aattgctccg ccgacaattg ctccgcctga       180
     agcgacaatt gctccgccga catttgctcc gccgacaatt gctccgccga catttgctcc       240
     gccgaagcgc acctgctccg ccgacatttg ctccgccgac aatgctccgc cgacaacgct       300
     ccgcctgaag cgacaatgct ccgccgactg ctccgcctga agcgacaatg ctccgccgac       360
     attgctccgc cgacaattgc tccgacgaca tgctccgcat gaagcgacac ttgcaccggg       420
     tgacatttgc tccgcgacat ttgctccgcc caaaaagtgt cccattaaat acaaatgcta       480
     ctagtactac gacaaatgct tcgccgacaa tatttttttt tcacgggttg tttttgtttc       540
     tttctttttt tcttcatttt ttgaatgcat ttcatgacat tatgtaaatg aaatgaaatg       600
     aatgaatgtt gataatgtgg gaggaaaagc agtttgccta aaagtcattt cgaatatact       660
     gaaataactt tccatctatc actgtacgtc ccacataata aacactaaac actcattaca       720
     tgtcatggga agtttttttt tttaaagtta gagcagctaa gccacatccc ccgtg            775
//
ID   CR1-16_SP   repbase; DNA   ; SPU   ; 4537 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-16_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; L1 ORF1;
KW   endonuclease; reverse transcriptase; CR1-16_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-4537
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-16_SP, a family of non-LTR retrotransposons from the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 74-74 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-16_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-16_SP are ~2% divergent form the consensus sequence.
CC   The consensus sequence is still incomplete at its 5' end.
CC   CR1-16_SP encodes two proteins:
CC   304-aa CR1-16_SPp1 (pos. 80-991) similar to the L1 ORF1 protein, and
CC   988-aa CR1-16_SPp2 protein (pos. 1212-4175) composed of the CR1-like
CC   endonuclease and reverse transcriptase domains. The sea urchin genome
CC   harbors other young CR1 families characterized by the L1 ORF1 protein
CC   (e.g. CR1-12_SP, CR1-14_SP, CR1-18_SP). Likely, this a feature of all
CC   CR1 non-LTR retrotransposons in sea urchin. Presumably, the L1-CR1
CC   hybrid emerged in the past as a result of a template switch during
CC   reverse transcription. The 3' terminus of CR1-16_SP is composed of
CC   the (TACCA) microsatellite.
XX
FT   CDS           1212..4175
FT                 /product="CR1-16_SPp2"
FT                 /translation="MMTLRASYERAISNVDLSTVSHILSPMIGDNETFGI
FT                 DQSFYLPDDLNSTFLKYSLNSINFSILHMNCRSILSNFDGISALLNSLNF
FT                 QFSVMGVTETWLKDNSLLCNIQGFSFLHNIRAERRGGGVGVFIRENLIHK
FT                 HRGDLDINNGVIESIFIEIENVCNKNIIIGVIYRPPDQSVQEFLDITGSA
FT                 LHKINTENKIVYLMGDFNINLLNTTSCHKANDFLNMLVTFSMYPLIHHPT
FT                 RVTDRCVSLLDNIITNDVTNKLNGAILVDISDHFPVFSVCHHKIKEKKYV
FT                 ISKRQFNDSNIFEFSKRLRNVRWNLKSSDCNVSYSCFLSKFIRIYEECFP
FT                 LQEINVNRRKHKPWINKVLMKKIKKKWKLYEKSLKNSTEYRKRVYKQYRN
FT                 KVTNEIKKAKYQYFKDKFNHDKGDIRLIWKTINGELGTKSVKQCVEKIDV
FT                 NGSTITNKEDISKSFNEYFVNIGFNLTNNVQYSNRFYNDNVFVNDKSAYF
FT                 TPISCKEIIDIVRCLKNGTSAGYDDINITVVKKIIHLICVPLCIFPNQMK
FT                 IAKVIPVFKSGDRTNVHNYRPISVLPIFSKIFEKCLYKRLRTFLTSCNIL
FT                 SENQHGFRTGHSTTTALLNFIDKVSNAIDSRQFTIGLFLDLSKAFDTLDH
FT                 VILLRKLEAYGIRGILLQLFKDYLSNRQQFVSIQNQQSSYLPIRCGVPQG
FT                 SILGPLLFF*IYINDIVSSSDLLHFILFADDTSVFMSHNNLRTLVDSFNS
FT                 EINKLSEWLINNKLVFNVAKTQYIVFTKRRIEDNFAITFYGHQINRTSCV
FT                 KFLGVHIDESLTWHEHVGVVCNRVAKAVGIIYRLRHFPRHILVMLYYALI
FT                 FSHVNYCNIAWSNSHDYFITKLFVLQKKAIRIISNSPYHAHTLPIFSQLN
FT                 LLNVYDINRLNIAIFMFMCSRGLLPSPITSKFVLNSNIHNYNTRNAVEYH
FT                 LPKVRTNISKNTIFYKGPHLWSTIPNHLKNQPSVNSFKRSFRLFLSNLYS
FT                 TT"
XX
FT   CDS           80..991
FT                 /product="CR1-16_SPp1"
FT                 /translation="LLCYILQLWIYIGLVRCLCIGLIFHHIFIFYFILSS
FT                 KSQSFYTLLHFTAIMPSDSSRDTEKSVANDAIQRYIKGEEFLNSIRQTVR
FT                 EALHKEINVLLNRIDINEGKIMDLECRFNEREKEIVDLKKLIEDQQSSLT
FT                 RVQRTANIQEQYSRRNCLRFYGVAHKEGKDTDDLICELARERLKVTLKKE
FT                 DIERSHRLPTKTTESVNPPARSTRSNKRNDGTKPDVIIAKFVSYRMRSLV
FT                 LSKRRELKGTRMGIDEDLTKTNANLLAKAKNCEKTLTAWSSDGRILGLFP
FT                 TSGGKQIKRLITSENDLK"
XX
SQ   Sequence 4537 BP; 1454 A; 730 C; 730 G; 1623 T; 0 others;
     tgatatttat gattttaatg aaccatttca taacaccgct tataatatct ctgctatctc        60
     aaacttcagc ttcctgtgac ttttatgtta catattgcaa ctttggatat acataggcct       120
     tgtccgttgt ctgtgtattg gcttaatttt ccaccatatc ttcatatttt acttcatttt       180
     gtcatctaaa tcgcaaagct tctacaccct cttgcatttt accgccatca tgccttcaga       240
     ttcatcacgt gatacggaga aatccgttgc taatgacgct atccagcggt acataaaggg       300
     agaagaattt cttaattcaa tccgacaaac agtccgagaa gcccttcata aagagatcaa       360
     cgtgcttttg aatagaattg atataaatga agggaagatc atggacctag aatgtcgttt       420
     caatgaaagg gagaaggaga tcgttgatct aaaaaagttg attgaagacc aacaatcatc       480
     gctgaccagg gtccagcgca cagccaacat ccaagaacaa tactcgcgac gcaattgttt       540
     gcgtttttac ggtgtcgcac acaaagaggg aaaggacact gatgacctca tttgtgagct       600
     tgctcgagaa aggctcaaag tgaccttgaa gaaagaggac atcgaacgat cacaccgcct       660
     gcctacaaag actacggaat ctgtgaatcc ccctgcccgt tcaacaagaa gcaacaaacg       720
     caatgacgga acaaaacctg acgtcatcat cgctaaattc gtgtcgtacc gtatgcggag       780
     tcttgtcttg tcaaagcgac gcgaactgaa aggcacaaga atggggatcg acgaggacct       840
     taccaagaca aacgctaact tactagcaaa agcgaaaaat tgtgagaaga cacttaccgc       900
     atggtcttcc gatggcagaa tactcggcct cttcccaacg agtggaggca aacaaattaa       960
     acgattaatt acgagcgaaa atgacttaaa gtgactatta aagacttttc tctagcactg      1020
     aagctatcac tgactctaca gagacccatt tccccattgt tatcaatcat gcaattactg      1080
     tggtgcattc caaatctgca gtactctgta ctcttagaac atttttgttt ctttttcttt      1140
     tttatgtaat agtagtaata actttggttt tgtgaatatt tattcttgtg tatttatgtg      1200
     tatacgtgtg aatgatgacc cttcgggcat catatgaacg tgcgatcagt aatgttgatt      1260
     tgagtacagt ttcccatatt ttgtcaccta tgattggaga taatgagacg tttggaatag      1320
     atcaatcttt ttatttgcct gatgacctta attctacctt tttgaaatat tctttgaact      1380
     cgataaattt ttccatatta catatgaatt gtcgtagtat tctaagtaac tttgatggta      1440
     tttctgcttt gttaaatagt ctgaattttc agttttctgt tatgggcgta actgaaactt      1500
     ggctgaaaga caactcatta ttgtgcaata ttcaaggttt tagcttttta cataatatta      1560
     gagccgagag gagaggaggg ggtgttggtg tgttcattcg ggaaaatctg attcataaac      1620
     atagaggtga tttagatatt aacaatggag taatagaaag tatatttatt gaaatagaga      1680
     atgtatgtaa taagaacata attataggag taatttatag gccacctgat cagtctgtgc      1740
     aagaattttt agatataact ggttcagctc ttcataaaat aaacacagag aataaaattg      1800
     tatatctgat gggagatttc aatattaatc tattaaatac cacatcttgt cataaagcta      1860
     atgacttttt aaatatgctg gtaacttttt ctatgtatcc actcattcat caccctactc      1920
     gggtgaccga tcgttgtgtt tctttattag ataatattat tactaatgat gttactaata      1980
     aattaaacgg tgctatttta gttgatatct cagatcattt tcctgtattt agtgtttgtc      2040
     atcataaaat caaggaaaag aaatatgtaa taagcaaaag acagtttaat gatagtaata      2100
     tttttgaatt cagtaaacga ttgcgaaatg tcagatggaa tttgaaatca agtgattgta      2160
     atgtgagcta tagttgcttt ttgtcaaaat ttattcgcat ttatgaagaa tgctttcctt      2220
     tgcaagaaat aaatgttaat agacgtaagc ataaaccatg gataaataaa gtattgatga      2280
     aaaaaattaa aaagaaatgg aaattgtatg aaaagtcttt gaaaaattca actgaatata      2340
     ggaaaagagt ttacaaacaa tacagaaata aagttacaaa tgaaattaag aaagctaaat      2400
     atcaatattt taaggataaa tttaatcatg ataagggtga tattagacta atttggaaga      2460
     ctattaatgg agaacttggt acgaaatctg tcaaacaatg tgttgaaaaa attgatgtaa      2520
     atggttccac aattacaaac aaagaagata tctctaaaag ctttaatgaa tattttgtta      2580
     atattggttt caatctgaca aacaatgtgc aatattccaa ccgtttctac aatgataatg      2640
     tatttgttaa tgacaaatca gcatatttta ctcctatatc atgtaaagaa attatcgata      2700
     tcgttcgttg tttgaagaat ggtaccagtg ctggttatga tgatattaat attactgttg      2760
     tcaagaaaat tatacatttg atttgtgtac ctctttgtat ttttcctaat caaatgaaaa      2820
     tagccaaagt tattccagtt tttaaaagtg gtgatcgcac taatgtacat aattaccggc      2880
     ctatttctgt cctccctatt ttttctaaaa tttttgaaaa gtgtttatac aagcgtttac      2940
     gtactttctt aacatcgtgc aatattttgt cggaaaatca acatggtttc cgaacgggac      3000
     actccacaac gactgctctt cttaatttca ttgataaagt ttctaatgca attgattcta      3060
     gacagttcac aattggttta tttcttgatt taagtaaagc ctttgatact ttagatcatg      3120
     taattttgtt acgtaaatta gaggcttatg gtattcgtgg aattcttttg caattattta      3180
     aagattattt atcaaatcgt caacaatttg tttctattca aaatcaacaa tcttcatatt      3240
     tgcccattcg ttgtggagtg ccccagggtt caatacttgg tcctttactt tttttttaaa      3300
     tttatattaa tgatattgtg agttcatccg atttgttaca ttttatatta tttgcagacg      3360
     ataccagcgt gttcatgtct cataataatc tccgtacgct agttgattca ttcaattctg      3420
     aaataaataa attaagtgaa tggttgatca acaataaact agtttttaat gttgctaaaa      3480
     cccaatatat tgtattcact aaacgacgta ttgaagataa ttttgcaatc actttttatg      3540
     gtcatcaaat taatcgtact tcttgtgtga aatttttagg tgttcatatc gatgaatctt      3600
     taacatggca tgaacacgtt ggtgtcgtat gcaatcgtgt tgccaaagct gttggtatta      3660
     tttaccgttt gagacatttt ccaagacata ttttagttat gttatattat gcattgattt      3720
     tctcccatgt caattattgt aatattgctt ggtcaaacag tcatgattac tttattacta      3780
     aactatttgt tttgcagaaa aaagccataa gaataatttc taattcacca tatcatgctc      3840
     atactttgcc aatcttttcc cagttaaatc tcctaaatgt ttatgacatt aatagattga      3900
     atattgcaat atttatgttt atgtgttcta gaggtttatt accatctcca attacatcaa      3960
     aatttgtttt aaatagtaac atacataatt ataatacacg taatgctgtt gaataccatc      4020
     tgccaaaagt tagaactaat atttcaaaga atactatttt ttataaaggt cctcatctat      4080
     ggagcacgat tccaaaccat ctaaagaatc aaccttccgt aaatagtttt aaacgttcct      4140
     ttcgattgtt tttatcaaat ttgtactcaa caacctgaat atcatagtat atatatgata      4200
     tatatatata tatgttattt ttttctgtat tatgttttcc ttttccgttt tactgtttct      4260
     acctgctttc tttttcttct taatgttatg ttaattacgt acttgtttag gggtcaacgt      4320
     tcaacaaggc taaatgctct tttttgttga cccctcattc gacataaatt ttctttctta      4380
     actaatttcc ttgttaattt tattgtattc atattatctg taatgttacc cttctacatg      4440
     tatttatgta tttctctctt ttttttttta atactctgta tgtattgtat atgttttttt      4500
     atgaagaatg aaataaatac cataccatac catacca                               4537
//
ID   SURF1       repbase; DNA   ; SPU   ; 333 BP.
XX
AC   X07085;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus retroposon-like DNA sequence SURF 1-1.
XX
KW   SINE2; SINE; Interspersed Repeat; Repetitive element; SURF1;
KW   retroposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-333
RA   Nisson P., Hickey J.R., Boshar F.M., Crain R.W.;
RT   "Identification of a repeated sequence in the genome of the sea urchin
RT   which is transcribed by RNA polymerase III and contains the features
RT   of a retroposon.";
RL   Nucleic Acids Res 16, 1431-1452 (1988).
XX
DR   GenBank; X07085; Positions     535     867.
XX
SQ   Sequence 333 BP; 86 A; 64 C; 70 G; 113 T; 0 others;
     cagatataag tattatatct cgcaattcgc atttcattcg catatatgga tatgggtttc        60
     gtatagtctc cgggctgtgg ttcgcggttc gagtccctcc gcgacactaa tgtcctttgg       120
     cacgacaaca aattaaatgt gttactctcc acccaggtgt attaaattac ctggtaggaa       180
     ttgtattcct tgaatacctt tacatcttag ggtagctggg ctaaagcagg gtaataatac       240
     tactttgtat aggcgccctt gggcatattc tgggatggat acgtgcgcaa tataaatgta       300
     gctagtattg ttattattat tatcattatt acc                                    333
//
ID   CSP2108     repbase; DNA   ; SPU   ; 312 BP.
XX
AC   J01193;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; CSP2108;
KW   Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-312
RA   Scheller H.R., Anderson M.D., Posakony W.J., McAllister B.L.,
RA   Britten J.R., Davidson H.E.;
RT   "Repetitive sequences of the sea urchin genome: II. Subfamily
RT   structure and evolutionary conservation.";
RL   J. Mol. Biol 149, 15-39 (1981).
XX
DR   GenBank; J01193; Positions       1     312.
XX
SQ   Sequence 312 BP; 79 A; 76 C; 51 G; 106 T; 0 others;
     ctgacttggt cgacagatct ggaatgagct tcccttggta attgatcata cccaagaacc        60
     gttggacatc tttccgacat ttcggtctct caatgttcaa gatagcagac actttctttg       120
     gatcacgttg aactccttga tcactgatca agtcaccaat aaatgtgagc ttcttgacat       180
     tgaactcgca tttgtctttg ttcaacttga gatacatttt tttcacaatg ctgagaacct       240
     ctctcaacct gttatcatgc tcctgttagg tagttcccta tacaatcaca tcatccatca       300
     ttgtgttaac tc                                                           312
//
ID   CR1-12_SP   repbase; DNA   ; SPU   ; 4566 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-12_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; L1 ORF1;
KW   endonuclease; reverse transcriptase; CR1-12_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-4566
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-12_SP, a family of non-LTR retrotransposons from the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 70-70 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-12_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-12_SP are ~2% divergent form the consensus sequence. The
CC   consensus sequence is likely complete. CR1-12_SP encodes two proteins:
CC   301-aa CR1-12_SPp1 (pos. 279-1181) similar to the L1 ORF1 protein, and
CC   988-aa CR1-12_SPp2 protein (pos. 1234-4197) composed of the CR1-like
CC   endonuclease and reverse transcriptase domains. The sea urchin genome
CC   harbors other young CR1 families characterized by the L1 ORF1 protein
CC   (e.g. CR1-14_SP, CR1-16_SP, CR1-18_SP). Likely, this a feature of all
CC   CR1 non-LTR retrotransposons in sea urchin. Presumably, the L1-CR1
CC   hybrid emerged in the past as a result of a template switch during
CC   reverse transcription. The 3' terminus of CR1-12_SP is composed of the
CC   (AACTCA) microsatellite.
XX
FT   CDS           1234..4197
FT                 /product="CR1-12_SPp2"
FT                 /translation="MFDINEDINLFDIDSFELTPFEFDNRLCSKFPKAFT
FT                 ISHINIRSLNKNIDALRLLYEECIKSKFHLIGLSEVWNVSCADILGIDGY
FT                 TLEVNCRDPGLRGGGVGVYVHSSLKYKMLKYDIDFAESLWLEVQIGDRSV
FT                 VVGVIYRKPNTDIFQFQGSLLSMLERIKVDKKLCILMGDFNIDLYNPCSV
FT                 NAEMLVTSLVCLGIHQLIKTLTRVTPMSGSLIDHIYTNMGADRICAGTIV
FT                 TDVSDHFPIFAIFEDSSVKLQPQGEVRYRSYKNYEKERFCDSLLLESWEN
FT                 VYECTDVNKAYDIFVQSFIGICDQYAPIVHRHSSRRKNDKPWLTRAIKKS
FT                 IKKKHKLYGKVLKSNYSEDNLKKYRTYRNVLTTVLRNAKRKYYSDIFEMY
FT                 KGDTAQTWKSINKLLKSGNSKVKTSHVDKLCVDDNGSKKVVTSGKEISEG
FT                 FNDFFVNVGPYLAKSINGNVDDVITFKDYLSDGIINSMFWEPVTHYEVQD
FT                 YLLTLNVKKACGFDDIPARLLKDAAEVIAKPLSYIYNQSLLNGVFPEAMK
FT                 VAKVTPIFKKGDRNVPGNYRPISVLPLLAKIFEKLVNKRLLDYFERNDVL
FT                 YKHQYGFRKHYSTKLSLINLVNDVLKSLDKGSVTLGVFLDFQKAFDTIDH
FT                 AILAGKLEHYGIRGLPLQWFKDYLCSRFQFVNYDGHSSLKQIITCGVPQG
FT                 SVLGPTLFLLYINDLPNSTNYFNFRLFADDSNLFHTFPPRQNLIDMDIVN
FT                 MHLDKVTIWCKVNKLTVNLLKTNYLLIRGSRQSVVTQGVLKIAETEIAQV
FT                 DVASFVGIYIDQHLTWKPHIQRVNKCIRKRVGVLYRLRQFVPRRVLLLLY
FT                 KTLIQPHMTYGIEVWGSNYEMNMKCLLLSQKMALRVITFSPIRTHSQPIF
FT                 QELKLLNVYQLHKLSICVFMYQLLNDKLPQSLIQYCCFIEHNYETRQRES
FT                 KKLSVPKVRTTQGKFSMSFRGTRYWNDLPLSVREKASVSCFRRTLISQML
FT                 IE"
XX
FT   CDS           279..1181
FT                 /product="CR1-12_SPp1"
FT                 /translation="MPQTRNSKNKMPGHFLPSSKPQGHIPTAKRPFTAHV
FT                 GVDQAVKEKRGMAAVEETSSNLGGSNEASAGIQLKFDGLLEELRGVGSEP
FT                 GDDIAQLVVTAVSTAVKAALPTIIQAVREACLSRFKEAVNPHLLRLQFKQ
FT                 DEIMQEQRRDNLRLTGLKENEEESEDALAERVCEVAREVGVDIQPTDISS
FT                 CHRLGKKREGGRSRQAIVRFISRRKRDRLYDGRFRLKGKDGMRGVFINED
FT                 LTPLRFSLLMRSKETPAVKSVSTKYGSIVCKLQDDAYKIIRSPDDLFELG
FT                 VDNVQYGDFKLHFLA"
XX
SQ   Sequence 4566 BP; 1428 A; 712 C; 974 G; 1452 T; 0 others;
     aggatagtag tagagactgt cctctttttg ctgtgtgatt attgcatcaa ttttgtatat        60
     ccgaatattt gcccgtcact ctaaatgtga ctcgtgagaa aggacaattt ggagacaact       120
     ttagtggact tcttggttgc tgttgagttc attaaaaaga ggacttctga ctttcagcta       180
     taactttact tacaactttt ggatcagttt gacacttcag tcccaagcct tctgttttat       240
     gtatatattt ctacaattcc tgggaatagt cacacaagat gcctcaaaca aggaacagta       300
     agaacaagat gcctggacat tttctgccaa gctccaaacc acaaggccac attccaacgg       360
     ccaaacgacc ttttactgcc cacgtgggag ttgaccaggc agtgaaggag aagagaggaa       420
     tggcagctgt ggaagaaacc agctctaatc tagggggctc gaatgaggcg agtgcaggga       480
     tccagctcaa atttgatggg ttgttggaag agcttagggg ggttgggagt gagcctgggg       540
     atgacatcgc ccagcttgtt gtgactgcgg tctccaccgc tgttaaagct gcactcccga       600
     ctatcatcca ggcggtgcga gaagcctgcc tttcaagatt taaggaggca gtcaacccac       660
     acctgctgcg tctgcagttt aaacaggacg aaataatgca agaacagagg agggacaacc       720
     tgcggctgac tggtctgaag gagaacgagg aggagtcgga agatgctctt gcggagaggg       780
     tttgcgaagt cgccagggag gtcggtgtcg acatccagcc gaccgatatt tcttcgtgtc       840
     atcggctcgg gaagaagaga gaaggaggga ggagcaggca ggccattgtc cgatttattt       900
     cgcggagaaa gcgagaccgt ctctacgatg gacggttccg gttgaagggg aaggatggaa       960
     tgagaggggt ctttattaat gaagacctca caccattaag attctcgctc ttgatgagat      1020
     caaaggagac ccctgccgtg aaaagtgtat cgaccaaata cggaagcatc gtctgcaaac      1080
     ttcaagatga tgcatacaag atcatccgga gcccggatga tctctttgaa ctcggagttg      1140
     acaatgtcca atacggcgat tttaagctcc atttccttgc ctagtatgtt tcactcaatt      1200
     ttaaggctat gttagattcc cgaatatttc attatgttcg atattaacga agacattaat      1260
     ttgtttgata ttgactcttt tgaattaacc ccattcgaat ttgataacag attatgttca      1320
     aagttcccaa aagcttttac gatttcacat ataaatatta ggtctttaaa taagaatatt      1380
     gatgccttaa gattattgta tgaagaatgc atcaaatcaa aatttcattt aattggattg      1440
     tctgaagtct ggaatgtatc ttgtgcagat atccttggga tagatgggta tactttggaa      1500
     gtgaactgcc gggaccctgg tttacgggga ggaggtgttg gagtctatgt tcattcttct      1560
     ttgaaatata aaatgttaaa gtatgatatt gactttgctg aatcactatg gcttgaggtt      1620
     cagatcggtg atcgttccgt tgttgtaggt gtcatttata gaaaaccaaa cactgatatt      1680
     ttccagtttc aagggagttt attgtctatg ttagaaagga ttaaagttga taaaaagttg      1740
     tgtattttaa tgggtgattt caatattgat ttgtataatc cctgcagcgt aaatgctgaa      1800
     atgttagtta cttccttagt gtgtttgggg atacatcaat taattaagac ccttacgagg      1860
     gtaacaccca tgtcaggttc cttaattgat catatttaca caaatatggg tgcagatcgc      1920
     atatgtgctg gtacaattgt aactgacgtt tcagatcatt ttcctatatt tgctattttt      1980
     gaagatagct cagtaaaatt acaaccacaa ggagaagtac gatatagaag ttataaaaac      2040
     tatgagaaag aacggttttg tgatagtcta ctcttggaat cctgggaaaa tgtatatgaa      2100
     tgtactgatg ttaataaagc atatgatata tttgtacaat cattcatagg tatatgtgat      2160
     caatatgctc cgattgttca tcgtcactct tccaggagga aaaatgataa accatggctg      2220
     actagagcta ttaagaagtc aattaaaaag aaacataaat tgtatggtaa agtattaaaa      2280
     tcaaactata gtgaagataa tttgaaaaaa tataggacgt atagaaatgt tttaactaca      2340
     gttttgagga atgcgaagag gaaatattat agtgatatat ttgaaatgta taaaggcgat      2400
     acagcgcaaa catggaagtc aataaataag ctattgaaga gtggaaacag taaagtaaaa      2460
     acgtcacatg tagataagct ctgtgttgat gataatggta gtaagaaagt tgtaacctca      2520
     gggaaagaaa tatcagaagg ctttaatgat ttttttgtta acgttgggcc ttaccttgct      2580
     aaatctatta atggtaatgt tgacgatgtt attacattca aagattatct tagtgatgga      2640
     ataattaact ctatgttttg ggaaccagtt actcattatg aggtacagga ctatttatta      2700
     actttaaatg taaagaaagc ttgcggcttt gatgatattc cagcccgatt actgaaggat      2760
     gctgctgaag taattgcaaa accattatct tatatttata atcagtcatt attgaacggt      2820
     gtgttcccag aggcaatgaa agtagccaaa gttacaccaa tttttaaaaa gggggataga      2880
     aatgtcccag gcaattatag acctatttca gttttgcctc ttttggccaa aatatttgag      2940
     aaattagtaa acaagaggct acttgattat tttgaaagga atgatgtctt gtataagcac      3000
     cagtatggtt ttcgtaaaca ttatagtact aagttgtctt taattaattt ggttaatgat      3060
     gtgcttaaat cactggataa gggcagtgta acactaggtg tattcctaga tttccagaaa      3120
     gcttttgata caattgatca cgcaatattg gctggaaaat tagaacatta tggaataagg      3180
     ggcctgcctc ttcagtggtt taaagattat ctttgtagta gatttcagtt tgtgaattat      3240
     gatggacata gctcattgaa gcagataata acatgtggtg ttcctcaggg ttctgtgttg      3300
     ggacctacac tgtttttgtt gtacataaac gatttgccaa actcaacaaa ttattttaat      3360
     tttagacttt ttgccgatga ttctaacttg tttcatacgt ttccaccgag acagaatttg      3420
     attgatatgg atatagttaa tatgcatctt gataaggtga ccatatggtg taaggtgaat      3480
     aaacttacag tcaatctctt aaagactaat tatttgttaa taagagggag taggcaatca      3540
     gtagtaactc aaggggtgct aaaaatagca gagactgaaa tagcccaggt tgatgttgca      3600
     tcatttgtag gaatttatat agatcaacac ttgacgtgga aacctcatat ccaaagggtt      3660
     aataagtgta ttaggaaaag ggttggtgtt ttatatagat taagacagtt tgtgccaagg      3720
     cgtgttttgt tgttactgta taagacgtta attcaaccgc atatgaccta cggaattgag      3780
     gtttggggaa gtaattatga aatgaacatg aagtgtttat tattaagcca aaagatggca      3840
     ctaagagtta taacgtttag tccaattagg actcattcac aaccgatatt ccaggagcta      3900
     aaattattga atgtgtatca actccataaa ctatctattt gtgtttttat gtatcaatta      3960
     ttgaatgata aattgccaca gtctctaatt cagtattgct gtttcataga gcacaactat      4020
     gagactagac aaagagaaag taagaagttg agtgtgccta aagtaaggac aacgcagggt      4080
     aaattttcaa tgtcattcag aggcacacgc tattggaatg atctacccct atctgtacgg      4140
     gagaaagcat cagtgtcttg ctttcgtaga actctaatat cacaaatgtt aatagaatag      4200
     ttgtttttaa ctttgaacca aggttcttgc ctttttgtaa atattatgtt atataattct      4260
     ttatctttta tttagtgtaa aataccaaag ctttgtattt aagcacagaa catatttacc      4320
     ctagatgtag aatagtttgt agcttaagta tgtattcaat agttattcat atttattcat      4380
     tacattctca ttcattgctg tgatactttt gtgtgttagt ggtaccagac acgattagca      4440
     ttaaatgcta ttttctggtc ccatttatcc tttcaatgtt aattaatcat tcacatttga      4500
     ttgttatatt gatgtacttt ttgttttgga taataaactt caaactcaaa ctcaaactca      4560
     aactca                                                                 4566
//
ID   DNAX-2_SP   repbase; DNA   ; SPU   ; 523 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus sequence.
XX
KW   DNAX-2_SP; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-523
RA   Kapitonov V.V., Jurka J.;
RT   "DNAX-2_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 224-224 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors several thousand copies of DNAX-2_SP
CC   (including elements that are 70% identical to the consensus
CC   sequence). These elements are characterized by a palindromic
CC   structure (excluding 8-bp termini). Target site duplications
CC   change from 0 to 9 bp. Classification is unknown.
XX
SQ   Sequence 523 BP; 100 A; 150 C; 165 G; 108 T; 0 others;
     cgtatccgga cacctacccc ctggacatcc acccccggat aaccacccca gtcaactacc        60
     ccctaggaca actaccccct aggacaacta ccccctagga caaccacccc ctaggacaac       120
     tacccccggg acaactaccc ccggacaact accccctagg acaactaccc cctggacaac       180
     tacccccgga caactacccc ctaggacaac taccccccgg acaactaccc cctaggatag       240
     ttgtccgggg gtagttgtcc tagaggatgg ttgtcgtagg gggtagttgt ctgggggtag       300
     ttgtccgggg gagttgtccg gggggtagtt gtccgggggt agttgtccta gggggtagtt       360
     gtccgggggg tagttgtccg ggggttagtt gtcccagggg gtagttgtcc tagagggtgg       420
     ttgccctagg gggtagttgt cctagggggg tagttgtcct agggggtagt tgactggggt       480
     ggttatccgg ggtggatgtc cagggggtag gtgtcctaga acc                         523
//
ID   DNAX-3_SP   repbase; DNA   ; SPU   ; 238 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   02-MAY-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus sequence.
XX
KW   DNA transposon; Interspersed Repeat; Non-autonomous; DNAX-3_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-238
RA   Kapitonov V.V., Jurka J.;
RT   "DNAX-3_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 83-83 (2005).
XX
CC   [1] (Consensus)
XX
CC   The genome contains >1000 copies of DNAX-3_SP. These elements
CC   are characterized by 32-bp terminal inverted repeats.
CC   Target site duplications are not detectable. The average divergence
CC   from the consensus sequences is 88%.
XX
SQ   Sequence 238 BP; 71 A; 42 C; 45 G; 80 T; 0 others;
     caatagaccg gtttactaac atattcaaat ttatggatgt ttctttcctg gggacctagt        60
     gacgagttat tccattaacc tgttattaat gaatgaacta caatacttgg aatccagtct       120
     gcatacatta cttgttgcta tgtcgggcaa gcctcgggca agctttcagg ttgtcaagaa       180
     caacctttgt ttaaaaagta tgcataaaat ttgaatatgt tagtaaaccg gtctattg         238
//
ID   SPRP1       repbase; DNA   ; SPU   ; 190 BP.
XX
AC   J01194;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence (clone lambda-2109B-18).
XX
KW   Repetitive sequence; SPRP1.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-190
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01194; Positions       1     190.
XX
SQ   Sequence 190 BP; 44 A; 40 C; 39 G; 67 T; 0 others;
     tcgagtgtat aaactgtgtt gttatcagtg gcgtcgatcg ctcgacgttt cattaaatta        60
     ttagagaaag aagacgattc gttgtactgt tttcgactcc taatccttgt ctgaataaag       120
     tttcccccct cccgcgcgaa acgcggaagc tttggcgttt catttgatta taactcttaa       180
     tccttgtttg                                                              190
//
ID   piggyBac-N2_SP repbase; DNA   ; SPU   ; 505 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous family of piggyBac DNA transposons - a consensus
DE   sequence.
XX
KW   nonautonomous DNA transposon; piggyBac superfamily; piggyBac-N2_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-505
RA   Kapitonov V.V., Jurka J.;
RT   "piggyBac-N2_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 249-249 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors several thousand copies of piggyBac-N2_SP
CC   elements characterized by 19-bp terminal inverted repeats and
CC   the TTAA target site duplications.
XX
SQ   Sequence 505 BP; 159 A; 84 C; 85 G; 171 T; 6 others;
     aggtaataca aagttttggt atggggtcat gaatttggtt caaatgaaca tattggaagc        60
     atatgcgatc ctacaatatt cagtgatcgt tgtcgcggtt gaaatcgagt cttaagtkat       120
     gaaattgtaa ataataaact ctttatgttg tatagctccc tctcaaggtc aagttttaat       180
     taagctttaa aacaatgttt cttgactaaa atcgaccaat ttyagctatt cccgtttgga       240
     aattatatat cgcaactgca tattctgaga ttttcatggt cgcagctacc attgdatggc       300
     cktaggggcg ctatttgaaa tttatcaaaa tttaccggga gcaccggtaa atttttatat       360
     tcaatttttc tcraaagcag aagtgtttta ggggctaaat tttctagtgc ttataataca       420
     tccacagggg catccaaata tatcaaaatt gtaaagaatc actatccabc caattttcaa       480
     aatttcccaa aactttgtat tacct                                             505
//
ID   CR1-13_SP   repbase; DNA   ; SPU   ; 4057 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-13_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease;
KW   reverse transcriptase; CR1-13_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-4057
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-13_SP, a family of non-LTR retrotransposons from the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 71-71 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-13_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-13_SP are ~4% divergent from the consensus sequence.
CC   The consensus sequence is incomplete due to 5' truncations of
CC   CR1-13_SP elements upon their retrotranspositions. Active CR1-13_SP
CC   encoded a protein (pos. 800-3700) composed of the endonuclease and
CC   reverse transcriptase domains.
CC   Due to the small number of copies, the coding region is not well
CC   reconstructed (several stop codons).
CC   The 3' terminus of CR1-13_SP is composed of the (TTTGAA)
CC   microsatellite.
XX
SQ   Sequence 4057 BP; 1385 A; 483 C; 614 G; 1575 T; 0 others;
     ctattgatga agcacttacg gcatacaacc tagatctttt gtggaaagcc aagcatcacg        60
     aaaaggtcaa agaagcctgg acatcagatg gtcacgtgat agttctgatt gccgctacga       120
     gaggaaaaac tacaaaaaag gatcatacgg aacttacatg atttgaacaa actaccataa       180
     taaaccaatg gacacatgca tgcgatgata cattccactt ctttgactag cattttcccc       240
     acaattgact aaattagtcc tgatttgctt ttaatatttc gtgttgtatt cttattataa       300
     gtaaattttg aatgttactt gttgtcatta attttttagt tcattttttc ttccatttat       360
     gaattgttct tctatttcaa caatatttta aaatctctga acgtttgtgt agtttgttta       420
     agttgtagaa ctgttttaag ttattggttt taattgtgtg tgttttaggc tttggtttcg       480
     taaccttagt tttgtatgtt cgtttatatt atctgtgtca tgtacacgtt tttctatttt       540
     ctctttattt tttatgtcaa aatgccagtg aaaatgatcg gaataaatgt gaaatataga       600
     tgcctataga accccaagat atacatcagt tattgagtcc aactacagag gaggatgaag       660
     aatatggacc aaatagtttt tgttatacgt ccgaggaatt taattcatgt ttaaacactt       720
     ttaattctca ttctaaagta tattttacat caagttacct tcatataaat tgtcgtagtt       780
     taaataagaa ttatagtgca atatgttcgc tttgatgaag aatatggacc aaatagtttt       840
     tgttatacgt ttaaacactt ttaattctca ttctaaagta tattttacat caagttacct       900
     tcatataaat tgtcgttttt caaataagaa ttatagtgca atatgttcgc ttttagatgc       960
     tattgatgtg caattttctg caattggttt tactgaaatt tggattaaag aggctgaccc      1020
     attctacaat tttaataatt atattttttt attgaatgta agacaaggta agaaaggagg      1080
     aggtgtagga cttttattaa atgataaatt gaaatataaa caacgtaagg atttagatgt      1140
     aaataatgaa tgttttgagt caatgtttat agaaattgaa aaggtaaaga aaaatgtttt      1200
     aattggtgtt atttatcggc ctccaaatca accagtgcaa tcgtttttag atattttaga      1260
     agatgcttta aatgttgtac ataaggaaaa taaagatata tatcttatgg gcgattttaa      1320
     tattaattta tttgatgtta actcttgcca atctgttaat gattttttag atttattgat      1380
     gactcatttt ttatatccta tgattcattg tccaacccga ataactgaca ggtcttgtac      1440
     tttaattgat aatattttta cgaacaattt agaagaagtt tggtgtggaa caattttaag      1500
     tgacgtacat gtgagtgacc atttgccagt atttttaatc aataaaaaac agtgtataca      1560
     aaatgaagat aataattttg ttttacgtga tctaaatgag gaaaatattg gaaaatttat      1620
     gcatgaaata tataactctg attggacttt atgttctaac gatccaaatt atagttatga      1680
     atgtttttta agacagtatg tttgtatttt taataaatgt tttcctttga aacaatgtgt      1740
     aaagagtaaa aagtataata accgatggtt tactaaagag ttacgcaaaa tgtgcaaaaa      1800
     aagtgtgaat tatataagaa gtacttgaaa gatccaattg aatataaaaa agataaatac      1860
     aacaagtata gaaatatggt gaatggtaaa attaaaaaag ctaaaatagc atattttaag      1920
     gccaaattta gaaatgcatc aggaaacata cggaaaacat ggaaattgat caatgaaagt      1980
     ctcggtaaga gtacgagtaa gcataatatg cccgactcgg ttatgtgcaa tgatcaagct      2040
     atatgtgata agaaagaaat atgctctgtt tttaataatt ttttttatta atataggacc      2100
     tagcttaact gataatttag acaacaactt agataatgat tttagtaatg atgacattta      2160
     tagtaatatt gattttaatt catgtacagc tttttttaat cctattaccc ccacagaaat      2220
     aatcaatatt gtaagtaaat taaaaaataa taagagttgt ggtcatgatg atgtaagtgt      2280
     taaattattg aaaaaagttg ttcatattat atcatgtcct ttaagtgcaa tatttaatat      2340
     ttctttatct acaggtatag taccagatca attaaaactt gcaaaggtta ttcctgtttt      2400
     taagaatggt actaaagaaa atgtttctaa ttatcgacct atatctatac tccctgtttt      2460
     ctcaaagatt ttagaaagag ctgtttataa tcgacttttt atgtttttaa ataagtgtaa      2520
     tattatcact gaatgtcaat atggtttcag acctgggcac tctacatcta atgcaattat      2580
     gcattttatt tataatgttt tgaaaacttt tgaaaataat catattttaa tgggcctttt      2640
     tttagattta agtaaagcat ttgatacatt agaccacact attttattga aaaaattata      2700
     ttattatggt attcgtggag taactttaaa atggtttgaa agttatttag aaaatagaac      2760
     ccaatttgta caaataaata aagataagtc taatatcgaa aaacttagat gtggagtgcc      2820
     tcaaggatcc atccttggac ctcttttatt tattatttat gttaatgaca tgtgcaatat      2880
     ttctgataaa ttgaagttta ttttatttgc tgatgacaca agtgttttta tgtctcattc      2940
     tgatgtccag gttttacaaa atgtttttaa gcaagaaatt ttgaaacttt ctaattggtt      3000
     tttatataat aaattggttt taaattatga taaaactaag tatatggttt ttacaaataa      3060
     aaatattgat tttaacaaca ttcatttacg agtaaatgat cataaatttg aacgtgtaga      3120
     taatctgaag tttttaggta ttgtaattaa tcataaattg aagtggcatg agcatataaa      3180
     tgtggtgtgt aataaaatag caaaaaatat tggtatttta tataaagttc atttttatcc      3240
     cttaaatatt ctgaaaatgt tgtatcatac tttaataaca ccatatttta attactgtat      3300
     agttgcatgg gcaaatttta ataaaattga tatgttaagg ttacttaagc ttcaaaagaa      3360
     agcaatacgc attattactc attcccaata ttatgctcac tgtaatcctt tattttgtaa      3420
     acttggaatt ttgaatgtaa tcgatatgca taatttttat attgcagttt tcatgttttc      3480
     atgttttaat ggcaatttgc ctaccttttt atcaacatgt tttaacttga attgtgatgt      3540
     gcataatttt aatactagaa atgccctaaa ttatcacctc cccaagatta gaacgacttg      3600
     tatgaaaaat tcactatttt ttaaaggacc attaatatgg aatagtatac ctcaggaaat      3660
     taaaaaatgc aaaactctca atctttttaa aattaaatat aaacaatttc tgttaaataa      3720
     gtataataat cagtattaat agtatgggca aatttttgac attttttttt atatactctg      3780
     atcgtgcatg atagtaagtt ttaatatgtt ctttgttttt tgttctgttc ttttgttctg      3840
     ttcttctgtt ctcgttttca tgtatgtgtg tttttagggg taggctttta tataaggaac      3900
     ttccctcctt tctgcctatc ccaaatgctc ttataaattg ccattgtatt tgttatcact      3960
     ttcttgtgtt tttttatatt tataactcca ttctgtattt gtatgtttta aatgttttta      4020
     tgaagagtgt tgaataaact ttgaatttga atttgaa                               4057
//
ID   SPEC1       repbase; DNA   ; SPU   ; 472 BP.
XX
AC   J01207;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus spec1 repetitive sequence.
XX
KW   Repetitive sequence; SPEC1.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-472
RA   Carpenter D.C., Bruskin M.A., Spain M.L., Eldon D.E., Klein H.W.;
RT   "the 3' untranslated regions of two related mrnas contain an element
RT   highly repeated in the sea urchin genome.";
RL   Nucleic Acids Res 10, 7829-7842 (1982).
XX
DR   GenBank; J01207; Positions       1     472.
XX
SQ   Sequence 472 BP; 168 A; 78 C; 79 G; 147 T; 0 others;
     tataaagcac atgtatagat gcaattgtta aaacaatgat tacataacac ttgcaagaat        60
     acattcaaag ataaaattac taagatatta tgacaaaaac cctctcaatc tggacctcta       120
     ggaagatcag agccattcaa taatttaacg gtccttaata gagctattca tccgtattta       180
     ttttaaataa ttatatttgt ttatgttcat gggcatgtaa tatgtttgtt taaacggaaa       240
     atgaaaccaa accaatctag agcccggcac taacgtcctt tggcaaggca ttaattcaca       300
     tttaccactc tccacccagg tgtataaatg ggtacctagc aattgatggg gtaatgataa       360
     atgcagggcc cgcaggacag cagtattgat actgatgttc gctagcctga gtttaaaaaa       420
     atattattat cattattaat agtagtagta gtagaagtac tagtatttta tt               472
//
ID   hAT-N1_SP   repbase; DNA   ; SPU   ; 652 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous hAT DNA transposon - a consensus sequence.
XX
KW   Mariner-N1_SP; nonautonomous DNA transposon; hAT superfamily; hAT-1_SP;
KW   hAT-N1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-652
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N1_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 247-247 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors several hundred copies of hAT-N1_SP-like
CC   elements. They are characterized by 8-bp target site
CC   duplications and 10-bp terminal inverted repeats. The
CC   hAT-N1_SP and hAT-1_SP elements share common 100-bp and 70-bp
CC   5' and 3' termini. Most likely, transpositions of hAT-N1_SP
CC   elements were catalyzed by the hAT-1_SP encoded transposase.
CC   An internal portion of hAT-N1_SP (pos. 105-525) was
CC   contributed by insertion of a Mariner_N1_SP element.
XX
SQ   Sequence 652 BP; 176 A; 127 C; 96 G; 252 T; 1 others;
     tagtgctgta gtcaaacgtt taaccgtccg gtatccgacc gcccatggcg gattccgttt        60
     tcaattggac ggtttcgttt tcccgttttt tttttttttt tttttttatt tttttttttt       120
     tttttttttt tttaagtttc gatttatgcc cctccacctg gcactatgcc tggcaatgtc       180
     tcccagctca gtaatcggtg tgttgactca ccactcggaa actagaacaa cactccaatt       240
     tgtctgtcat cttggtttga aagtaatctt tgtaatagat ctcaatatgt agtttataat       300
     aataattcat ccaattttta cacatggtgt accacaaggt tctatcctag gtcctctact       360
     gtttttaatt tacattaatg atcttacaca ttcttctaaa aacgacattg ttactattat       420
     ttgtgacaag ttcacaagca caaatcggcg ccttcaaatg cacctcgcag ttaaatgaaa       480
     gtccttcccg ctttttcaca cggacaaaaa acaaaaaaaa aaaaaaaaaa aatgattttt       540
     twtttttatt ttttttattt ttttattttt taaaaaatcg tttaaccgaa aaccgtccgg       600
     ttttgactgg cggttaaacg gaattggaga tatccgtgat gttacagcac ta               652
//
ID   CSP2096     repbase; DNA   ; SPU   ; 203 BP.
XX
AC   J01188;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2096.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CSP2096;
KW   Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-203
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01188; Positions       1     203.
XX
SQ   Sequence 203 BP; 50 A; 43 C; 50 G; 60 T; 0 others;
     aattcgggta cgagttggat tgtaggagtg tagtgagtct ttaatgtatt gtggcgagat        60
     tccatggaga gcccgataaa caagtaacat aattttgaag tggacccttt tctggacagg       120
     tagccagtga agagagcgta atataggcgt aatagaagac attcttggcc ccccccttct       180
     ctctctctct ctctctctct ccg                                               203
//
ID   piggyBac-N1_SP repbase; DNA   ; SPU   ; 538 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous family of piggyBac DNA transposons - a consensus
DE   sequence.
XX
KW   nonautonomous DNA transposon; piggyBac superfamily; piggyBac-N1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-538
RA   Kapitonov V.V., Jurka J.;
RT   "piggyBac-N1_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 248-248 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors several thousand copies of piggyBac-N1_SP
CC   elements characterized by 190-bp terminal inverted repeats and
CC   the TTAA target site duplications.
XX
SQ   Sequence 538 BP; 173 A; 79 C; 99 G; 187 T; 0 others;
     aggggaagtc caccctgata ttaagttggt tttaataaaa gcaaaaaatg agagaaacaa        60
     attagtgaaa gtttgagcaa aatccgatta aaaataggaa agttatgaat ttttgaagtt       120
     gtcatcagtg aaacacaaat tggcaacact gtgacgtatc ttgcgagctc ctctccaatt       180
     tgctctgtac agaaattcat aaactttcat tttcttagtt attgatgacg gaatagattt       240
     gtttcataca ggggttgtat aaaaacatat ttgcaataat tatatttagg gtgaatgtat       300
     gattgaaaat tttcttaagg gaaaatatag atttttgaag ttttttagta cagggcaaat       360
     gggaggggag ctcgcaagat acgtcacaga gttgccaatt tgtgtttgat tgattgcacc       420
     ttcaaaaatt cataactttc ttatttttaa tcggtttttg ctcaaacttt cactgacctg       480
     tttctctcat ttttctgctt ctattaaaac caacttaata tcagggtgga cttcccct         538
//
ID   SINE2-3_SP  repbase; DNA   ; SPU   ; 368 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   A family of SINE retrotransposons - a consensus sequence.
XX
KW   SINE; Interspersed Repeat; non-LTR retrotransposon; non-autonomous;
KW   SINE2-3_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-368
RA   Kapitonov V.V., Jurka J.;
RT   "SINE2-3_SP, a family of SINE2 retrotransposons in the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 97-97 (2005).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors ~4000 copies of SINE2-3_SP
CC   elements.The consensus sequence represents a major young family of
CC   SINE2-3_SP elements (they are >95% identical to the consensus
CC   sequence). The 70-bp 5' terminus was derived from a Lys tRNA pol III
CC   region. The autonomous non-LTR retrotransposon involved in
CC   proliferation of SINE2-3_SP is not known yet. Given the lack of
CC   target site duplications and 3' microsatellites in SINE2-3_SP, the
CC   unknown autonomous element is expected to be a member of the CR1
CC   clade.
XX
SQ   Sequence 368 BP; 98 A; 91 C; 100 G; 79 T; 0 others;
     aggaggcgag ttggctcagt cggtaaagcg tccgtctgtc gaaccaaaga tcccgggttc        60
     gactcccacc caggcggatg actgaagcct gcgttgtgtg ttaacgtgcc ccttcccttg       120
     ttcatagacg caggttatgt caagtggaaa acactccgtc cctcggatag gacgttaaat       180
     ggaggccccg tgtagagaag agtcactacc tttgcacgtt aagaacccac tgcactattc       240
     gtataagagt agggggaaac cccggtgtag tggtccacct gcacacccca accaggccga       300
     gtataatacg gcatctgcaa ggatcttcag tattgaagga ggcagattat cttgaagaag       360
     aagaagaa                                                                368
//
ID   CR1-9_SP    repbase; DNA   ; SPU   ; 2654 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-9_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat;
KW   reverse transcriptase; CR1-9_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-2654
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-9_SP non-LTR retrotransposon from the sea urchin genome.";
RL   Repbase Reports 5(4), 81-81 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-9_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-9_SP are ~2% divergent form the consensus sequence.
CC   The consensus sequence is incomplete due to 5' truncations of
CC   CR1-9_SP elements upon their retrotranspositions.
CC   CR1-9_SP encodes a 810-aa protein (pos. 1-2430) composed of
CC   the reverse transcriptase domains. The 3' terminus
CC   of CR1-9_SP is composed of the (CTTCAAA) microsatellite.
XX
FT   CDS           2..2029
FT                 /product="CR1-9_CR"
FT                 /translation="FNESFNTNLPLQRPAQPNYKKMPRPPWISKTLLRSI
FT                 HRKNRLFYRYKTEPDEKNKRKYTHYRNKLTVILRVAKKQYYSRQFNIFKS
FT                 DIKSTWKVINTVLNNKNKNQSDFKDIYVDGEHLQNNTSVANAFNSFFVNI
FT                 GPNLARNIPDSNLPFHSFLRGNIPNSLFFLPTHETEVIDIVNNFKLKNSS
FT                 GYDGITNVLLKKIIHVIVSPLTHIFNLSLTTGTVPNKMKIAKVIPIFKKG
FT                 DQQDVGNYRPISLLTIFSKILEKIVYSRLIAFLNCNHVLSGSQFGFRKKH
FT                 STAHALLLFINKIANAIDNVLHTAGIFLDFSKAFDTINHDILLHKLSHYG
FT                 VRGRALEWFRSYLSGRKQFVYIDGSESTLQPITCGVPQGSLLGPLLFILY
FT                 INDLKNSSEILSFILFADDSNLFCSHKNPETLLNTVNTELNCVFKWIQAN
FT                 KLSLNINKTYFMLFSNSVSSLPGHIKINNVTINQVESTKFLGVYIDSKLT
FT                 WKVHINCLCKLLSRNSGVMNKLKPFVPPHVMLLLYSTLILPYLNYCILAW
FT                 GNSSITLMDKVNVVQKRAVRIINNVGFLAHTNMLFYNCNILKISDLHLYN
FT                 IGIFMYELSKDNLPDAFVPFFFQRNNTIHSYPTRQTNHFHLPRTRTVFAN
FT                 KTIIFTGPKFWNSLNNELVESPSINSFKRKLRCFLLSKYV"
XX
SQ   Sequence 2654 BP; 826 A; 553 C; 346 G; 929 T; 0 others;
     atttaatgaa tcgttcaata ccaacttacc attacagcgt cctgctcaac ctaactacaa        60
     aaagatgcct agacctcctt ggatttcgaa aactctctta aggtccatac atagaaaaaa       120
     cagattattc tatagatata aaactgaacc agacgaaaag aataaaagaa aatatactca       180
     ttatcggaat aagctaactg ttatacttcg cgtagccaaa aaacaatatt attcccgtca       240
     attcaatata ttcaagtccg acatcaaaag tacgtggaag gtaatcaaca cagttttaaa       300
     taataaaaat aaaaaccaat ctgactttaa agatatttat gttgatggtg aacatctaca       360
     aaataatact agcgtggcaa atgcgttcaa ttcttttttc gtgaacatag gccccaatct       420
     tgcccgcaac attcccgatt ccaatctacc attccattct tttctaagag gcaacattcc       480
     aaatagtctt ttctttttac ctactcacga aactgaagta attgatattg taaacaattt       540
     caagctgaaa aatagttcag ggtatgatgg tatcactaat gttttactca aaaaaatcat       600
     ccatgtaata gtttctcctc taacacatat tttcaatcta tcactaacaa ccggcactgt       660
     ccccaataaa atgaagatcg caaaggttat acctattttt aagaaaggtg atcaacagga       720
     cgtaggaaat taccgcccca tttcacttct aaccattttc tcaaagatcc tcgaaaaaat       780
     tgtttattct cgccttattg cttttttaaa ttgtaatcat gttctctccg gctcccaatt       840
     tggttttcgc aagaagcact caaccgcgca cgcacttcta ttatttatca ataagattgc       900
     aaatgctatc gacaatgtgt tacatactgc gggtattttc ctggacttct ccaaggcctt       960
     cgatacaatt aatcacgata ttttactcca taagttatcc cactatggtg ttcgagggag      1020
     ggccttggag tggttcagga gctacctcag tggtagaaaa cagtttgtat atatagatgg      1080
     ttcggaatcg actcttcaac caattacctg tggcgtaccc caaggttctt tattaggtcc      1140
     gctccttttt attttataca tcaatgatct caaaaactct tctgaaatct tatcatttat      1200
     tcttttcgcg gatgactcca atttattttg ctctcacaaa aacccagaaa cacttctaaa      1260
     cactgtaaac accgaattaa attgcgtttt taaatggatc caagcaaata aattgtcgct      1320
     taatataaat aaaacatatt tcatgctatt cagtaattct gtatcatcct taccaggtca      1380
     tatcaaaatc aataacgtaa ctatcaacca ggttgaatcc accaaattct taggtgtcta      1440
     tatagacagt aaactaacat ggaaagttca catcaattgt ttatgtaagc tgttgtcacg      1500
     gaactccggt gtaatgaata agttgaaacc ttttgtacct cctcatgtca tgcttctact      1560
     ctattctacc ttgatcttgc cttatcttaa ttattgtata ctcgcatggg ggaatagctc      1620
     tataaccctt atggacaaag ttaatgttgt acaaaaacgg gctgttagaa taataaataa      1680
     tgttggtttt cttgcccata caaatatgct tttctataat tgtaatattc ttaaaatatc      1740
     tgacttgcac ttatataata ttggaatatt tatgtatgaa ctatcgaaag ataatttacc      1800
     agatgctttc gtcccctttt tttttcaacg caataatact atacattctt accctactag      1860
     acagacaaac cattttcatc tccctcgaac tcgcaccgtt tttgctaaca aaacaattat      1920
     ttttactgga cccaaattct ggaacagcct gaataacgaa ctagttgaaa gcccctccat      1980
     taattcattt aaacgaaagc tcaggtgttt ccttttgagt aagtatgtat aaaagtaatg      2040
     ttgatgtcgc gctggatcgt acaggtggtc gtacaggtgg ttatacagac tttgtttttg      2100
     ttattttaca atgccattga tttcatcaat ttgctttctc ttcttcttct tctgcctctt      2160
     cttcttccac ttctttttcg tcttcctctt cttcctcttt cttcccttct tcaccttctc      2220
     ctacttatca ttattatatt attctcttta ctctttattt ctatttttcg tttcttctca      2280
     aattcactct ccttgtacgt ctctagaatc tcatactata ctactccgtt ttcgcctcct      2340
     ataatacctt ttaaattcag acctactata ttgtgttact cagtacggga gcctattcac      2400
     atacaagcta tgctttttat ttaggctccc cacattttac attgttctac ctagcctgtt      2460
     atatatacat atttcgaaat ttcgtactta ttttccgtac attatatttg atttgaaatc      2520
     tttaattaaa atttttttct tgtgtgaaat ctactcttat aataatatac gcctgtataa      2580
     aaaagaaaaa aaaaaaaaac tgtttttcta tgtaaaatgt ggaataaata aaacttcaaa      2640
     cttcaaactt caaa                                                        2654
//
ID   CR1-14_SP   repbase; DNA   ; SPU   ; 4396 BP.
XX
AC   .
XX
DT   29-APR-2005 (Rel. 10.04, Created)
DT   29-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   CR1-14_SP is a non-LTR retrotransposon - a consensus sequence.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; L1 ORF1;
KW   endonuclease; reverse transcriptase; CR1-14_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-4396
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-14_SP, a family of non-LTR retrotransposons from the sea urchin
RT   genome.";
RL   Repbase Reports 5(4), 72-72 (2005).
XX
CC   [1] (Consensus)
XX
CC   CR1-14_SP is a non-LTR retrotransposon that belongs to the CR1 clade.
CC   Copies of CR1-14_SP are ~2% divergent form the consensus sequence. The
CC   consensus sequence is still incomplete. CR1-14_SP encodes two
CC   proteins:
CC   283-aa CR1-14_SPp1 (pos. 1-283) similar to the L1 ORF1 protein, and
CC   958-aa CR1-14_SPp2 protein (pos. 1056-3929) composed of the CR1-like
CC   endonuclease and reverse transcriptase domains. The sea urchin genome
CC   harbors other young CR1 families characterized by the L1 ORF1 protein
CC   (e.g. CR1-12_SP, CR1-16_SP, CR1-18_SP). Likely, this a feature of all
CC   CR1 non-LTR retrotransposons in sea urchin. Presumably, the L1-CR1
CC   hybrid emerged in the past as a result of a template switch during
CC   reverse transcription. The 3' terminus of CR1-14_SP is composed of the
CC   (AATGA) microsatellite.
XX
FT   CDS           1..849
FT                 /product="CR1-14_SPp1"
FT                 /translation="APVRPTDPSDTPTNTPPGTPPASVSASSSIDQFLLS
FT                 SDFKQLIDRAVQSAVERVMEKEMVRLVTNMEKRESRLSDLIEEKLARLHD
FT                 LEVSVEERLHEFKAVKDSLERVTEDTTRVSRELDQLQQYSRRNNIRILGI
FT                 KESPNENTDQLVCQIARSIGVDLAPTDLDRSHRVSRRPQEGPIQDPQGNR
FT                 SFANTTRSSDSRPRAIIAKMMSYKSKEALIRNRRKLKGSGQVIVEDLTRK
FT                 NAELLAATSKMKDKVSATWSIDGRIMAVLTSTGKKKQIRSHSDLKLI"
XX
FT   CDS           1056..3929
FT                 /product="CR1-14_SPp2"
FT                 /translation="MSLRMLYQSAINSLDLNAISNVLSPMNDEENGLGIS
FT                 QSFFLPDELNEKLSFNKINSINFSMMHINCRSILKNMDGISSLLNNLDFQ
FT                 FSVLGITETWLNETSSTGLCNVKGYNFININRQNRRGGGIGIYLRDSLVY
FT                 KQRDDLNINNDSFESLFVEIENVSDKNVILGVVYRPPDQSIESFFDQLSS
FT                 VLAIVNNENKLIYLMGDFNINLLSTVSSQNANSFLNLFTSFFMYPLIHNP
FT                 TRITDHSATLLDNIFTNDMKNKFSGVILVDISDHFPVFSISYSNRINEKK
FT                 KHILKRIMNERNIIKFNERLKDVYWNLKLSDPNASYSFFLAKFLRLYDEC
FT                 FPMQEILIKSKCMNKPWMNRDLLKNIRKKWRLYKKYLKSPTEYRKNVYKQ
FT                 FRNKITNEIKKSKYQYYKNKFNNDKGNMKATWKTINEALGSKSCSKQCID
FT                 EINVDGRKITDKDEVSEIFNEYFVNIGYNLTNNVQYSKSFDHKKLKRNDK
FT                 TAFFSPVTCKEIIDIVCSLKNGTSPGYDEINVGVIKKVIHIIAPQLCSIF
FT                 NSCISYGVFPTQLKLAKVIPVFKAGDVSYAKNYRPISVLPLFSKIFEKCL
FT                 YKRLNDFLFSCNILSDNQYGFRSGHSASMALLEFIHKACKAIDSKEYMVG
FT                 LFLDLSKAFDTLDHYILLSKLEDYGIRGNVLLLFKSYLLDRSQFVVINNH
FT                 KSSNKQIRCGVPQGSILGPLLFLVYINDIITSSKLLQFILFADDTSVFMS
FT                 GSNLNMLLDTFTVELHKLNDWLLNNKLVINIDKTQFMLFTKRKVEDDNLI
FT                 IHFNGQAINRVSFTKFLGVYIDDKLTWHEHIGVICNRVAKGVGIIYRLRH
FT                 FPRYILIMLYYALIIPHINYCNITWSNGSDYFMTKLFKLQKKAVRLLYDA
FT                 PFNAHTLPLFQQLKLLNVYDINNVNIAIFMFMCSKGLLPRSMSCKFTFNY
FT                 EIHSYETRNAGNFHFPKIRTNV"
XX
SQ   Sequence 4396 BP; 1449 A; 696 C; 731 G; 1520 T; 0 others;
     gcgcctgttc gtccaaccga tcccagtgac acacccacta acacgcctcc gggcacaccc        60
     ccagcatcag tatcagcatc atcgtcgatc gatcaattcc tactaagctc ggacttcaag       120
     cagctcatcg accgcgccgt ccagtctgca gtcgagcgag tgatggaaaa ggaaatggta       180
     cgccttgtta ccaacatgga gaagcgagag agcaggctct ctgatctaat cgaggaaaag       240
     cttgctcgcc ttcatgactt ggaggtttcg gtggaagaaa ggctccatga gttcaaagct       300
     gtgaaggatt cattggaaag ggttacagaa gacacgacaa gagtttctcg ggagttagac       360
     cagcttcagc agtattctag gcgtaataat attcgaatcc taggtattaa agaatcaccg       420
     aatgaaaaca ccgaccagtt ggtctgtcaa atcgcgagga gcatcggggt agatctagct       480
     ccaaccgatc tagaccgctc tcatcgggta tcgcgacgtc cgcaagaagg accaatccag       540
     gatccgcaag gaaatcgttc gtttgcaaac acgacgcgat cttcagattc gcgccctagg       600
     gccatcatag ccaagatgat gtcctacaaa tcaaaggaag cgctcataag aaatagacgc       660
     aaattaaagg gctcaggtca agtcatcgtg gaggacttga caagaaaaaa cgctgaactt       720
     ctggcagcca catcgaaaat gaaagacaaa gtgagtgcaa cctggtcgat tgatggacga       780
     ataatggcgg tgctgacatc aacaggcaag aaaaaacaga taagatcaca ttctgacttg       840
     aaacttattt aatcaataac gttttttgtg cagccatgga agttcatggt gcaataaata       900
     ctatccaact tatatgctga tgaagataaa cacatatata ttttactcat tgtaggcttc       960
     cggtcctctt ttatcaaatt atataaactt ttgaactctt aaatgtatgt tctttttatc      1020
     gtgttaatgt gcttatttac ccgtcttttc taaatatgtc tctccgtatg ttgtatcaaa      1080
     gtgcaatcaa tagcttagat ttaaatgcaa tatcaaatgt cttatcaccc atgaatgatg      1140
     aggaaaatgg ccttgggata agtcagtctt ttttcttacc agatgaatta aacgaaaaac      1200
     tttctttcaa taaaataaat tccattaatt tttcaatgat gcatattaat tgtagaagta      1260
     ttttgaaaaa catggatggc atttcatcat tgttgaataa tttagatttt caattttctg      1320
     tcctggggat cactgagact tggttgaatg aaacctcatc aacagggctg tgcaacgtca      1380
     aaggttataa tttcattaat atcaatagac aaaacaggag aggtggaggt attggtatct      1440
     atttgagaga ctctttagtt tataaacaaa gagatgattt gaatattaat aatgattcat      1500
     ttgaaagttt atttgttgaa attgaaaatg tatctgataa aaatgtaata ttgggtgtag      1560
     tctatagacc tcctgatcag tctattgaat cattttttga tcaattatct tctgttcttg      1620
     ctattgtaaa taatgaaaat aaattaattt atttaatggg agattttaat atcaatttgt      1680
     tatcaactgt ctcttcccaa aatgcaaatt ccttcttgaa tttgtttact tcttttttta      1740
     tgtacccact tattcacaac cctactcgta ttactgatca ttccgcaaca ttattggata      1800
     atatttttac aaatgatatg aagaataaat ttagtggtgt gattttggtt gatataagtg      1860
     atcattttcc tgttttcagt atatcttatt ccaatagaat taatgaaaag aaaaagcata      1920
     tacttaaacg aataatgaat gaaagaaata ttattaaatt taatgaacgt ttgaaagatg      1980
     tatattggaa tttaaaacta agtgatccta atgctagtta cagcttcttc ttggcaaaat      2040
     ttctacgttt atatgatgaa tgctttccca tgcaagaaat attaattaaa agtaaatgta      2100
     tgaataaacc gtggatgaat agagatttat taaaaaacat aaggaaaaaa tggcgtttat      2160
     acaaaaagta ccttaagtca cccactgaat acaggaaaaa tgtgtacaaa caatttagaa      2220
     ataaaattac aaatgaaatt aaaaaatcta agtatcaata ttacaaaaat aaatttaata      2280
     acgataaggg taatatgaaa gcaacatgga aaactataaa tgaagctctt ggttcaaaat      2340
     catgttctaa acaatgtatt gatgaaatta atgttgatgg tagaaaaatt acagacaaag      2400
     atgaagtatc agaaatattc aatgagtatt ttgtaaatat tggttacaat ttaacaaata      2460
     atgttcaata ttctaaatca tttgatcata agaaacttaa aagaaatgat aagactgcat      2520
     ttttttctcc tgtaacttgt aaagagatta ttgatattgt ttgttcttta aaaaatggaa      2580
     ctagtcccgg ttatgatgaa atcaatgttg gtgtcattaa aaaagtcatt catataattg      2640
     caccacaatt atgttctata tttaattctt gtatttcata tggtgtattc cctactcaat      2700
     taaaactagc aaaagtaatc ccagttttta aagcagggga tgttagttat gccaaaaatt      2760
     accgcccaat atctgttcta cctttatttt caaagatttt tgagaagtgc ttatacaaac      2820
     gtttgaatga ttttctattt tcatgtaata ttttgtctga taatcaatat ggtttccgct      2880
     cgggacactc cgcatcgatg gcgcttcttg aatttattca caaagcttgt aaagctatcg      2940
     attctaaaga atacatggtt ggattgtttc tcgatttgag caaagccttc gatacattag      3000
     atcattatat tttgttgagc aaattggaag attatggaat tcgtggaaat gtattattat      3060
     tatttaagag ttatttgtta gaccggtctc agtttgtagt tatcaataat cataaatctt      3120
     caaataagca aattcgatgc ggagtgcccc aagggtccat tttgggtcct ttacttttct      3180
     tggtttatat aaacgatatc attacttctt ctaaactctt acaatttatt ctttttgcag      3240
     atgacaccag tgtgttcatg tctggaagta atctgaacat gttattagat acatttactg      3300
     tcgaattaca taaattgaat gattggttgt taaataataa attagttata aatattgata      3360
     aaactcaatt tatgttattt acaaagagaa aagttgaaga tgataatttg attattcatt      3420
     ttaatggaca agctataaat cgtgtttctt tcactaaatt tctcggtgtt tacatcgatg      3480
     ataaattgac atggcatgag cacattggtg tcatatgtaa tagagttgct aagggagttg      3540
     gtattattta tcgattaaga cacttcccac gatatatttt gattatgtta tattatgctt      3600
     tgataattcc acacattaat tattgtaata ttacatggtc aaatggttct gattatttta      3660
     tgacgaaatt atttaaatta caaaagaagg ctgttcgatt actttacgat gccccgttca      3720
     atgcccacac tttgccactt tttcaacaat taaagcttct aaatgtttat gatataaata      3780
     atgttaatat tgctatattt atgtttatgt gttctaaggg attattgcca aggtccatgt      3840
     catgtaaatt tactttcaat tatgaaatac attcttatga aacccgtaat gctggtaatt      3900
     ttcattttcc taaaatccgt acaaatgttt aaaaaaatac agtttttttc aaagggccag      3960
     ttttgtggaa aaatatccca tttaatataa aaaaactcta cttcactgaa tatttttaaa      4020
     cgaatgtata aatcccatct tttattattg tattcaatct caaaataaat gacgttacgt      4080
     ttcagttaat gcacttttta atgtattccc cctccccttc ccttcttcct ttttttgttt      4140
     tcttcttttg tattggtgtt tagattctct cggctttcct tttccttttt tcttttctca      4200
     acaatacaat gtatactttt taaggggttg acgttcataa ggctaattgc cctttttgtt      4260
     aaccccacat tcacataaaa ttttgtttgc tccttccctt tgtatttttc ttgtaatcga      4320
     tcttttatct gtataccatg tttgtatgtt ttgatgtttt tatggagaat gaaataaatg      4380
     aaatgaaatg aaatga                                                      4396
//
ID   hAT-1_SP    repbase; DNA   ; SPU   ; 6306 BP.
XX
AC   Contig26222;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   hAT-1_SP, a family of autonomous hAT DNA transposon in the sea urchin
DE   genome.
XX
KW   Autonomous DNA transposon; hAT superfamily; hAT-1_SP; hAT-N1_SP;
KW   transposase.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-6306
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-1_SP, a family of autonomous hAT DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 246-246 (2004).
XX
DR   BBBCM; Contig26222; Positions     227    6532.
XX
CC   hAT-1_SP is a fossilized copy of an autonomous hAT DNA
CC   transposon. It is flanked by 10-bp terminal inverted repeats
CC   and share common 100-bp and 70-bp 5' and 3' termini,
CC   respectively, with nonautonomous hAT-N1_SP. The 595 hAT-1_SP
CC   transposase is encoded by 3 exons (CDS pos. 2100-3185,
CC   3545-3702, 3967-4507).
XX
SQ   Sequence 6306 BP; 1980 A; 1156 C; 1244 G; 1926 T; 0 others;
     tagtgctgta accaaacgtt taaccgtccg gtatccgacc gcccatggcg gattccggtt        60
     tgaatttgac ggtttcgttt acccgatttt tttttttttt tttttttttt tttttttttt       120
     tttttttaaa tttgtgtttt tattggaaaa tcaaaagaaa tcacaatatt tacaaataat       180
     ttacacattt agaaacaaaa tcacaaaaca aaaacggaga cttaactgtc gggcatgcat       240
     tggaacattg actaggtttc actttgttta tgaatctaat aaatcaagtt ttgccgacat       300
     tatagtcatc ataagtcagc cccgacttgt gatgttgaat tgtaaagcaa cacaatcaac       360
     tgagaagttg acccgtaaaa ctattaagtg cccagcctaa aaataaaaca gttcaatcaa       420
     aagcctctaa attgtaaaaa taactctggc ttcacgtgac cgcgcaacgc atcgaaagtc       480
     ccaaccatta aacgaggtca atgagacaat gaccccagct catgccccag tttttcttgc       540
     gcaatattac aacaaatttg gcgaggccgg gtgaaataca tagtctgtac tttcagtcac       600
     tgataatgcg taaccgtccc aaactccata gactccaaat cacattttaa tttttaaagt       660
     tacttacaaa ttatgtacaa ctttgcaaga taactacgaa aagcgtgatt atggtattta       720
     ttgaagaatc atattcaaga atgaatcaat aaacccaggc aaaatgttga gtttcaataa       780
     agttttgaag tttatgtttg tgtttgtcta tgatttatac ttaacttgag ttacgttcat       840
     attttgtaaa cagctacgtt actggtgtgt taatctgtca tgtggaatta tctagtgact       900
     agaaataacc cggatcagta attttattga aattgggatc taggggaagc ctttcttatt       960
     ttcatcattg atcaatttct aagtcctaat tactaaataa agggtgcatg gacggataat      1020
     acaccgccga actgttttta attcattaac ttgtcgacag acaagtcgca gacgacagta      1080
     tctcttcata gtttatttga gtgccgttgt tcttgtgttt tcactggcgg ccttttttta      1140
     gaagttcgtc ggaaaataaa cttagagaag aatacgtttc cgattagaat ctataaatca      1200
     gccgagtgtc gatttttgtt taaaaaactg ccgatgatta ttttggcggt tgtttttttc      1260
     ggacgtcatt tcgtaatttt cgttcaagag tatatatcaa ttttaatgta ttaaacaaaa      1320
     tgattaatga tgtaactgtt aactgaagtt aggagtttga gataacccag ggtatttcgc      1380
     cagctgattt tggaaggggg taatcctttt ttgtttaata atattgtaag tcaagtttac      1440
     tcctgaaaca attctttcat ttaattccga ttgtcaataa agaatctaac attcagccga      1500
     gtgtcgattt ttgtttaaaa aaactgccga ttgttttggc ggttgtttgt tttggacgtc      1560
     atttcgtcca agcgtacata ttaatttatt aaacataatg attaatgatg tagcttttaa      1620
     ctgaaattag gagtttgaga taacccagga aatttcgcca gctgattttg gaagagggta      1680
     atcctttttt gtttaataat attgttagtc aagtttactc ctgaaacaat tctttcattt      1740
     aattccgatt gtcaataaag aatctaacat tcagccgagt gtcgagtttt gttttaaaaa      1800
     atgccgatga ttgttttggc attttttttt tggacgtcat atcgtccaag cgtatatatt      1860
     aatttattaa acatattgat taatgatgta gcttttaact ggaattagga gtttgagata      1920
     acccagaaaa tttcgccggc tgattttcga agggggtaat ccttttttgt aaaataaata      1980
     ttgtttataa gtcaagttta ctcctgaaac tacctatcac tatcatcctt tcgtttgcgt      2040
     tcgtccacga cggttataat tatatctttc tcgccttcga attcgaatat tacgtcaaga      2100
     tgccaagcaa agtttggcgc gtgtttacga aagtttcgtc gactaccgtg aaatgcacta      2160
     tttgcgatcg tgtgctgggc tataagggag ggtcgaccgg agctatgtta aatcacatga      2220
     agactcatcc caactccatt gaagatgaca gacagccgag actttcatca ttcaaccgac      2280
     aatgtaaccc ggatagagca cagcgaattt ctaatctcat cgccgatatg atcgcaaagg      2340
     atggactgcc catcaacttt gttgagggcg aggggtttcg agcactcatg cacgacgtcg      2400
     aaccagactt cacaatccct agccgacaaa ctgtgatgag aattcttgaa ctaaagtttc      2460
     tagagcagaa gactaaaatt aagcactgga tgagcggatg tgaacacatc gcaataacga      2520
     ccgactgctg gacaagcttg ggccaggaag gatttatgac cgtgaccgca cacggcatcg      2580
     ataaggaatg gatcaagaga agtttcgttc tcaacaccag ccctgtggcg agcctcgacg      2640
     acaacgatga ggacaacgat cccccactcc cacagcggca tacttcccaa gcgctaaagt      2700
     cgcaactcag agaagttgct caaacctggg agataaacaa taaagtgtgt ggggttgtgc      2760
     acgacaacgc agccaacgtc agggtgattg gcgaggccgt gggagcaccg gacgttcctt      2820
     gcacagctca taccctccaa ctctgtgtga atgctggctt gaactcgaac ggccagttac      2880
     aaagagtcat tggagccgtg agtcgcttgg tagggcactt caaacactct gtggtggcat      2940
     cacaagctct aactgccaag caagaccagc ataacttgcc aaaacatcgc ctaatccaat      3000
     ctgtcaaaac gagatggaat tcggtgtacg atatgtttgc tcgagttacg gaacagcgct      3060
     gggccatcac aagcgttctg agcgatgaac gtttgacgct tcatcgtgat gcgacaaccc      3120
     tgcaactcaa ggacgagcac tggtctatcg tcgacaacat ggggaaaaca ctggaacctt      3180
     ttttggtaag tacaattgaa attattttca ttaaatatat tttaattatc ttacaatttt      3240
     ctattcaatt tcacaaataa gaaataatta gaatgcatca atcatatgca atgaaatttc      3300
     aattaaccat tctactgtaa ataaccattt ttcattaacg attttatcgt attttttaat      3360
     atgttaatta atataatata cataaatata tttgctcgta agtatgaatt tatgaacaat      3420
     ttgcaaagat gcaaacttga aaaaagaaaa actgacatta ttgcattgga tttgtaagtt      3480
     gtaagtttgt aactagtggc taggtctagc tgtaaccatt gcattgtctt ttttcactta      3540
     ataggtagca acaaaggtac tttccagcga agaacatcca acggcatcaa cagtccttcc      3600
     aatgatcacg ggactacttg acaacttcct catcgtggag gaaaccgata gcggaatagt      3660
     ccgacagttc aaggaaacaa catcagagca attgaagaga aggtaccgat tatattaaac      3720
     aaaacgcaaa tgcttcattt aattaaagaa agagaaaaaa gagacactat ctcattggaa      3780
     aaattaacaa cttattcgat ttttaatatc aattgtaaaa aaaaaaaaaa aaaaaacttg      3840
     tataaaatgt tgctatcgca aataaaatga cagcactaga cttttaaaaa aagcaacaac      3900
     aacatatata atgctgatgc tcaaatatta catttctaat tcataaattt ttcgtttcat      3960
     ccttaggttc catatcaaat ccgctcgaga gcgagacgag gatgtcgaga tagaagatgt      4020
     atcggctttg catcttgctt cagcattgga tccccgctac tcaaacctca cttatctacc      4080
     acgcgccatg agaaacgtcg taaagaacaa gctgaatgag cttatcccag aaagagatga      4140
     cgaagaacag aacgctgatg tcgagcaacc atcaacgtcg cttgatttcc ttattacggg      4200
     aaggaggttt acagctccgc aacaacagcg tgacagtgtg gaagaaattc atacattttt      4260
     tgatctgccc gtggtcccct ctactgctga cgcagttgcg tggtggaaag cgaacgaagc      4320
     gtcatttcct ctcctcggca atgtcgcaaa gaggtttcta acaataccgg caacatctgt      4380
     cccatccgag agggtgttct ccactgcggg caatatagtc accaagaaac ggagctgcct      4440
     tttggccgag aatgtgaata tgctgatatt tctcaaacat aacgcaaagt ctatccctct      4500
     gatctgagaa aggacttaaa ttgatgatgt tatttcataa actacatgct ctttattact      4560
     cttgtagtat acttctcaac gataaagatg acatcacttt gttattgtta atttgttaca      4620
     gacttattcc tcacttaccc ttttatcccc gttcgtacga tatgattcta gtttctgtta      4680
     taaataatta aaatatgtta ttttatgact tatctttcaa agtctgaata tacgctattc      4740
     atctaaaatg tttgaaattt gttgagtttt ttcatggtga tgtcattttt aggcaatgag      4800
     atatcaccga atgaacaagt taaatttttg aagtacaaac taaaatcgat tattatcaaa      4860
     ataaactatt agaatcaagg tcacaagttt tcacaacgct agtttattaa gccgacacaa      4920
     acttaactgc tgagcgcaga tctctaaatg ttctttcgta ataattatta tgctcggtat      4980
     ttgttatatt tcattttctt gccacatttg caaaaagggg gtagacaact aggcatgtta      5040
     taatttataa tccttgccta acacgtagta ttgggataat tgtatcaaaa cataatgcgc      5100
     ctgtaaatag cctgtactgt tgtgtgtcga actgtcgatt tgttttattt ctttgtcaaa      5160
     gataaatagc ccaaactctg aagtttggca ttttaatctt tgaaatgtgc gtgcttgact      5220
     agtcttgtct ccctgtcagt atatttcttg ttaccgtaat tcaatgaata ggagacgatt      5280
     gccatattta aaattgttaa ctttagagag ttagacacaa ggcttatgaa aatgatgatc      5340
     catgtactga cctccgaagt ccgaatttca aagtcaaaaa aagttatagc atcagcgagg      5400
     ggtcggggta tggtaaatgt gttttcttcg aatcacatgt caacatctcg ctgttttata      5460
     tttggaagga aaacatagga acttaggaag cacgtgaatg cccaactcat ttacatatgc      5520
     cttgtgtcag ctgctgaagt tgaattaaca agcagtgata tgattggcta gtcgatgtat      5580
     ggataatgtc cgcgcacaca atgcatggag ttttgcgagg gagatcgaga gagagagaga      5640
     gagatagtgc agtgatgatt agagcatgat tggtcatgaa taatgataag ttggtgctga      5700
     ttgtgagcga tgattggtcg cttacatgag acacgatgca gacagcgcgg gcatggtgcg      5760
     agagagagag agagagatgt gtgcatgagg gtaccgggtc ggtgacgggt cataaaaata      5820
     aacatgattc agtaatattc tttgaaaccg cgcgcggtgt ctagatattt acaaactgaa      5880
     caagaaataa caaccaagtg ataagcagta gtattcagct tagatttcag ctggatattt      5940
     aaaaaatgaa caagaaatga caaccaagtg ataagcagta gtatctggct tagatttcag      6000
     ctggatattt acaaactgaa caagaaatga caaccaagtg ataagtagta gaattcagct      6060
     gtcaggggcg gtttaatatt tacaaacaga gcagcaataa catcgcaccg caccgatgag      6120
     tgattgagtg caatgaatga cctagaaact tgatacctgg cgtgtgctgg gtgcgtgata      6180
     tactactatt cttttttaat cagcggcgac cctggcaaaa gtgaataatt ttcgtttaac      6240
     cgaaaaccgt ccggttttga ctggcggtta aacggaattg gagatatccg tgatgttaca      6300
     gcacta                                                                 6306
//
ID   CR1-5_SP    repbase; DNA   ; SPU   ; 4174 BP.
XX
AC   .
XX
DT   07-2004 (Rel. 9.11, Created)
DT   07-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a partial consensus
DE   sequence.
XX
KW   CR1 superfamily; CR1-5_SP; non-LTR retrotransposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-4174
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-5_SP, a family of CR1 non-LTR retrotransposons in the sea urchin
RT   genome.";
RL   Repbase Reports 4(11), 289-289 (2004).
XX
CC   [1] (Consensus)
XX
CC   CR1-5_SP is a family of CR1 non-LTR retrotransposons. The
CC   consensus sequence was reconstructed from 10 copies 99%
CC   identical to it. The 5' terminus of CR1-5_SP is not known. The
CC   consensus encodes the 1047-aa CR1-5_SPp protein (pos. 1-3141)
CC   that includes the CR1-like reverse transcriptase domain. The
CC   3' terminus of CR1-5_SP is composed of the (TCTA)
CC   microsatellite.
XX
SQ   Sequence 4174 BP; 1181 A; 907 C; 854 G; 1232 T; 0 others;
     cccagccagc gtgtgaacat tgaactttgt tgtgaaatta ctgtttctgc ggataaactt        60
     gccccaaata tgttggataa ttttgggatt attgtggtgc tttctgtcat cgcatcacta       120
     cctcacttca tagccgagag taggccggcg ctcttggctg gggtgacgat ggagtttcag       180
     ctggtacaga attcaattga cactgaacgc tattcagacc agtaccgcta cacaaaagat       240
     gaacttttgt cgttacgtaa cacttcccat tcacggctcc ctgacaacgt atttgcaaga       300
     ataaaagaac tgggtatcga taaacgccgt ggttgtcgcg ccggttctca caagtggaga       360
     aagattgctg tcgtcgaagg aaggaggaga agaacgccca aaccacctgg agttcgggca       420
     ccccaactca tcccaattaa aactattaca actgtgagta ctgatcgcca atcacaaggg       480
     aacttaccta ctatttacat gtgcaatcct cgttcactaa acaataaact tgatgaattt       540
     tccgttgttg ttcatgaatt gtgttgtgac gtctgtgtgg tgactgaaac gtggtttaga       600
     gcagatcaac ctgaaagtga ctttgcagtg gatgattatt tagtttttgc caaatctaga       660
     gattccagaa ggggtggtgg tgtcgcgatt tatgccaaac cagagtcgat gcccaaaaca       720
     gtgaactttc ttcccccaca tccgcaccac gaagtaattt ggttacaact tcgacctaaa       780
     cgtttaccga gagacatttc ttgtctctat gttgctgctg tgtattcccc tcctgacaat       840
     gattgcgtaa atgatttgat acagtacctc gtaaacgcta ttgatgacat caaaaccaga       900
     catggagatg ctggggttgt tatcctcggg gattttaata gagctgatac ttccgagttg       960
     accagtacat gtaacctgag acaagttgtt aggaaagcaa cacgcggtac tgcaatcttg      1020
     gatctcattt taactgacat ccatcagtgg tattctgaac ctgagatcct ctcacctctt      1080
     ggcctagggg gtgatcacaa tgcagttctc tggaaaccaa aactcaacaa aaccaacagt      1140
     aaaaacaagg cagtcaggaa atttgttcgt cctatgaaag actctgcgat tcgtgagttt      1200
     ggtcaatgga tatctcaaca tacttgggat gatgtcatgg caagctctag tgcccaagag      1260
     aagtgtgaca aattgtatgc ttcactacaa aacgcaatgg acgaatacct gcccatgaaa      1320
     tcggtgaaga tgcatccacg tgacaagccg tgggtgacgc cgtatttgaa atcactgatt      1380
     ggtcaacgtc aaaaggcttt cagcaatgac cggactgagg aatggaaacg cttaagaaat      1440
     aaagttcaga acaagaaaac tgagctgaag aaaaatttct acaaggaccg tgttttgaaa      1500
     ctaaaacgtg agaatccttc tagctggtat aaacacttga aaatcatgac ttcatcaaaa      1560
     actgcaagca acatcatcat acctgagtcg ccagaactag acgacttagc catcgctgac      1620
     tgtgtgaatg accatttcgc aaatgttagt caggatattc cggaacttga tcttcagagc      1680
     ttgccagcct acttgccaac tccgaaacct cagcttacag ttcaacccca cgaagtttac      1740
     aaggaactga atcgaataaa gccgggaaag tccagtggac ctgacggcat ccctgcgcgc      1800
     attgtcaagg agtttgctgt ggagctcgca tcacctctct gcgaagttct aaactcatca      1860
     tatcactctg ggtctgttcc atcacaatgg aaaggggcaa ttattgctcc tattcctaag      1920
     gaaaaggccg catcatccat cgacaaacaa agacccatct cattaaccga tcacttcgct      1980
     aagatagctg aggtcttcat ttatcgcaaa cttctggctg atgtacgcca tcaactggat      2040
     ccaaagcagt tcggtgcaag agctggtcgg tctaccacac attgtctggt agaaatctac      2100
     aacttcctat gcaaaagagc cgaactaccc agtaacgtaa cctctatagt gtcaacagac      2160
     tttagccgtg catttgacag ggttgatcat acaatcctga tccgcaaact catcacctta      2220
     gaagtgcatc catgggtcat tgtgtggata tgcagtttcc ttactgatag acagaatcaa      2280
     gttcgatatc atggagaact atcttctacg agatcaatga cagcgggagt cccccaggga      2340
     acgcgcctcg gaccccttct gttccttgtc ctcatcgacg atgccttgcg cgagtcagaa      2400
     gtcgagcgct ggaaatatgt tgatgacatg tcgctcgctt ctgctgagcc ttctaatcaa      2460
     cacggtcagt tcatgcagaa cgttttggtc aatttggagg agtggtgcaa tcaaaacaat      2520
     gttcgactta atcccaagaa gtgcaatatc atgagggtca cattcagcaa aacaccactt      2580
     cctgaccgcg acttcagcct gtgtaacgac gtgctacaag aggtctcagc tgtcaaactg      2640
     cttggagtaa ttcttcaacg ggaccttaag tggaacgatc acgtatctgt caccatttct      2700
     cgcgcctcat cgcgtctcta catgttaaga cgctggaaag agttccatct ccctgcggct      2760
     gaccttgtga cagtttacgt tggttttgtc agaccacttc tggaatatgc gtgtcctgtg      2820
     tggcactcca gtttgacttg tgcccaatca gcagcattag agcgcatcca gaagcgagcc      2880
     ctacgattga tttttcctgg tacctcctac aatacgtcac ttgatttggc tagaatcgtg      2940
     gatctagaga cacgtagaaa gactttgtgc attaactttg caacgaaagc atctaggtct      3000
     gaagttggta gtgactggtt caccgaaaac aatccaacaa gaaatctgag aaaaaataaa      3060
     cgttatcgtg agcctaggtg tcgtacaaat cgataccaaa acagccctat tccattcatg      3120
     acaaaattat tgaactttaa ttgaactttg tataaactct aatagaaggg gcaaacagac      3180
     tttagtatga ctgattttaa atgatatttg catgttttta attactcact ttgaaattaa      3240
     aataatgttt tttaaaacat atagtttggg attattacta ttgcctattt ccaatgcatg      3300
     aaaccttcgg gcgtagacgc ggaggagtgg tctattgtta gtgaggagga tgtctgttgt      3360
     tgttttcttt gttcatcccc tcacttcaat agataaccta ccgtgcctgc gcctgccaac      3420
     atggttatgt tttaggatct tgtttattac atcccagcct ttttaaatag atttaattca      3480
     ccttagctaa actggatcat gttttttttt actctttact aattaactgg ataaatcact      3540
     cgagcattat aatacatgta ccatatttaa agcatgacct atagtattta ttcattcaca      3600
     aaaaatgtga tttcatagaa aattgaacga ttaatgctaa acatagattt atatttttgt      3660
     aattttccac acgcaacact actattttca gagttgaaat gttctaaacc agttaattgc      3720
     catgtacagt attacgcatg tatttcttgt taagtatgta atgttttaat catgtaaaag      3780
     ttatcatttt cttatactcc ctcccccttt ctttctctcc tccgccatac ctgtcctttt      3840
     gtattcatta tttcactgtg aattgtgctg tatattgtat gcatgggtgt tgatccgttg      3900
     cgtcgtgcta ttcatcaggg gggtatatga tcttactgtt tcgtgcccca ctggtgactg      3960
     gggtggcgca gcggttcgac gccggtgcca agagttgcat tattatctat agtagtttat      4020
     tattagtaag tgcaatttta ccttgtaata attaattctg taatccattg cgcaatttag      4080
     tttttagcta cgaagcatgg aattaatgaa catttattgt ttacatgttt gatttgattt      4140
     gaataaacca tttatctatc tatctatcta tcta                                  4174
//
ID   SP2109AB    repbase; DNA   ; SPU   ; 203 BP.
XX
AC   K01648;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus 2109A repeat element.
XX
KW   2109A repetitive sequence; SP2109AB; Repetitive sequence.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-203
RA   Posakony W.J., Flytzanis N.C., Britten J.R., Davidson H.E.;
RT   "Interspersed sequence organization and developmental representation
RT   of cloned poly(A) RNAs from sea urchin eggs.";
RL   J. Mol. Biol 167, 361-389 (1983).
XX
DR   GenBank; K01648; Positions       1     203.
XX
SQ   Sequence 203 BP; 69 A; 28 C; 38 G; 68 T; 0 others;
     agcaaaagta gagtaatgtc caagctgagg ccgtgaattt ttctgcaaag catttaacac        60
     tgatttaagg cccctctggt ccttatgtat tgattaacta catgtatatt tattcatttg       120
     agtagaaaaa aaactgtaaa ataacatgca taagtgatgg acgtctgaat atttaaacat       180
     tttgtaaata gtgctagttt gtg                                               203
//
