ID   MSTAR       repbase; DNA   ; PRI   ; 1651 BP.
XX
AC   .
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   18-APR-1997 (Rel. 6, Last updated, Version 2)
XX
DE   MSTa-Mammalian LTR internal retrotransposon sequence - a consensus.
XX
KW   Repetitive sequence; MaLR family; MSTa subfamily; MstII; MER10; MSTAR.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-1651
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   PhD dissertation, Univ Southern California, 1995.
XX
CC   [1] (Consensus)
XX
CC   ORF: bases 48 to 1469.
XX
SQ   Sequence 1651 BP; 436 A; 353 C; 489 G; 371 T; 2 others;
     gaawattggt actgaggagt ggagcattgc tataaagata cctgaaaatg tggaagcgac        60
     tttggaactg ggtaacaggc agaggttgga agagtttgga gggctcagaa gaagacagga       120
     agatgaggga aagtttggaa cttcttagag acttgttaaa tggttgtgac caaaatgctg       180
     atagtgatat ggacagtaag ggccaggctg acgaggtctc agatggaaat gaggaactta       240
     ttgggaactg gagcaaaggt cactcttgtt atacattagc aaagagcttg gctgcatttt       300
     gcccctgccc tagagatttg tggaagtttg aacttgagag tgatgatcta gggtatctgg       360
     cggaagaaat ttctaagcag caaagcgttc aagatgtgac ctggctgctt ttaacagctt       420
     acagtcatat gcgagagcaa agaaatcact taaagttgga atttatattt aaaagggaag       480
     cagagcgtaa aagtttggaa aatttgcagc ctggccatgt gatagaaaag aaaaacccgt       540
     tttctggaga gaaattcaag caggctgcgg agcgaccgtt tgctaaagag attagcataa       600
     ctaaaaggaa gccaagtgct gatagccaag acaatgggaa aaaggcctcg aaggcatttc       660
     agaaatcttc gaggtggtcc ttcccatcac aggcccagag gcctaggagg actgaatggt       720
     ttcgtgggcc aggcccaggg ccccgctgcc ctgtgcagcc tcgggacact gctccctgca       780
     tcccggctgc tycggctcca gccgtggctc aaagggcccc aggtacagct cgagctgccg       840
     cttcggagag tgcaagctat aagccttggt ggcttccaca tggtgttaag cctgcaggtg       900
     cacagaatgc aagagtgaag gaggcttggc agcctccacc tagatttcag aggatgtatg       960
     ggaaatcctg ggtgcccagg cagaagcctg ctgcagggac ggagccctca cagagaacct      1020
     ctactagagc agtgccaaag ggaaatgtgg ggttggagcc cccacacaga gtccccaccg      1080
     gggcactgcc tagtggagct gtgggaaggg ggccactgtc ctccagaccc cagaatggta      1140
     gagccactgg cagcgtgcac cgccagcctg gaaaagccgc aggcatcaga ctccaacccg      1200
     tgagagcagc cacgtgggct gtgcccagca aagccacagg ggcggagctg cccaaggcct      1260
     tgggagccca cccctcgcac cagcgtgccc tggatgcgag acacggagtc aaaggagatt      1320
     attttggagc tttaagattt aatgactgcc ctgctgggtt tcggacttgc gtggggcctg      1380
     tagccccttt cttttggccc atttctccct tttggaatgg aaatatttac ccaatgcctg      1440
     taccaccatt gtatcttgga agtaaataac ttctttttga ttttacaggc tcataggtgg      1500
     aaggaacttg ccttgtctca gatgagactt tggactttgg acttttgagt taatgctgga      1560
     atgagttaag actttggggg actgttggga aggcatgatt gtattttgca atgtgagaag      1620
     gacgtgagat ttgggggaac caggggcaga a                                     1651
//
ID   MSTA        repbase; DNA   ; PRI   ; 426 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Transposon-like human element long terminal repeat (MSTa subfamily) -
DE   a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MSTa subfamily; MstII; MER10;
KW   MSTA.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-426
RA   Jaiswal K.A., Gonzalez J.F., Nebert W.D.;
RT   "Human P1-450 sequence and correlation of mRNA with genetic
RT   differences in benzo[a]pyrene metabolism..";
RL   Nucleic Acids Res 13, 4503-4520 (1985).
XX
RN   [2]
RP   1-426
RA   Lawrance K.S., Das K.H., Pan J., Weissman M.S.;
RT   "The genomic organization and nucleotide sequence of the HLA-SB(DP)
RT   alpha gene..";
RL   Nucleic Acids Res 13, 7515-7528 (1985).
XX
RN   [3]
RP   1-426
RA   Mermer B., Colb M., Krontiris G.T.;
RT   "A family of short interspersed repeats is associated with tandemely
RT   Repetitive DNA in the human genome..";
RL   Proc. Natl. Acad. Sci. U.S.A 84, 3320-3324 (1987).
XX
RN   [4]
RP   1-426
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [5]
RP   1-426
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [5] (Consensus)
XX
CC   Replaces MER10 sequence.
XX
SQ   Sequence 426 BP; 85 A; 111 C; 101 G; 124 T; 5 others;
     tgatatggtt tggatctgtg tccccaccca aatctcatgt tgaattgtaa tccccaatgt        60
     tggaggtggg gcctggtggg aggtgattgg atcatggggg cggattyctc atgaatggtt       120
     tagcaccatc cccttggtgc tgtyctcgtg atagtgagtg agttctcatg agatctggtc       180
     gtttaaaagt gtgtggcacc tcccycctct ctctcttgct cctgctctcg ccatgtgacg       240
     tgcctgctcc cccttcgcct tccgccatga ttgnaagctt cctgaggcyt ccccagaagc       300
     cgagcagatg ccagcgccat gcttcctgta cagcctgcag aaccgtgagc caattaaacc       360
     tcttttcttt ataaattacc cagtctcagg tatttcttta tagcaatgtg agaacagact       420
     aataca                                                                  426
//
ID   THE1B       repbase; DNA   ; PRI   ; 364 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Transposon-like human element long terminal repeat (THE1b subfamily) -
DE   a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; THE1b subfamily; THE1B.
XX
OS   Hominidae
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini.
XX
RN   [1]
RP   1-364
RA   Sun L., Paulson E.K., Schmid W.C., Kadyk L., Leinwand L.;
RT   "Non-Alu family interspersed repeats in human DNA and their
RT   transcriptional activity.";
RL   Nucleic Acids Res 12, 2669-2690 (1984).
XX
RN   [2]
RP   1-364
RA   Paulson E.K., Deka N., Schmid W.C., Misra R., Schindler W.C.,
RA   Rush G.M., Kadyk L., Leinwand L.;
RT   "A transposon-like element in human DNA.";
RL   Nature 316, 359-361 (1985).
XX
RN   [3]
RP   1-364
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons.";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [3] (Consensus)
XX
CC   Replaces OFR sequence.
XX
SQ   Sequence 364 BP; 74 A; 89 C; 88 G; 108 T; 5 others;
     tgatatggtt tggctgtgtc cccacccaaa tctcatcttg aattgtagct cccataattc        60
     ccacgtgtcg tgggagggac ccggtgggag gtaattgaat catgggggcg ggtctttccc       120
     gtgctgttct cgtgatagtg aataagtctc acgagatctg atggttttat aaaggggagt       180
     tyccctgcac angctctctt gcctgccgcc atgtaagacg tgmctttgct cctccttcgc       240
     cttcygccat gattgtgagg cctccccagc catgtggaac tgtgagtcca ttaaacctct       300
     ttyctttata aattacccag tctcgggtat gtctttatta gcagcatgag aacggactaa       360
     taca                                                                    364
//
ID   ORSL        repbase; DNA   ; PRI   ; 630 BP.
XX
AC   M26221;
XX
DT   30-APR-1998 (Rel. 6.5, Created)
DT   30-APR-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Origin of replication-like (ORS8) region (a consensus).
XX
KW   Origin of replication; ORSL.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-630
RA   Rao S.B., Zannis-Hadjopoulos M., Price B.G., Reitman M.,
RA   Martin G.R.;
RT   "ORSL..";
RL   Unpublished (1989).
XX
RN   [2]
RP   1-630
RA   Rao S.B., Zannis-Hadjopoulos M., Price B.G., Reitman M.,
RA   Martin G.R.;
RT   "Sequence similarities among monkey DNA-replication ori-enriched (ors)
RT   fragments..";
RL   Gene 87, 233-242 (1990).
XX
RN   [3]
RP   1-630
RA   Jurka J.;
RT   "ORSL..";
RL   Direct submission to Repbase Update (1998).
XX
CC   [3] (Consensus)
XX
CC   This sequence is moderately repeated in human DNA.
CC   It shares ~200bp stretch of similarity with African
CC   Green Monkey origin of replication region (Acc. No. M26221).
XX
SQ   Sequence 630 BP; 183 A; 118 C; 135 G; 175 T; 19 others;
     ycccatacyg tttccrtcac trgtytgwgc accctctgca rggmagacag catgaytttt        60
     yatctttgaa tycyyaaaas ttagctcact gtgtgctcaa acgtgtattg aatgacagtt       120
     gctatatttg aggacbacat agattttggg gaagacggac aggcacacta gcagaaccat       180
     acgaaggcca ggatcagtca tgaccagggc tgcattatga cttgtgggcc ctgagcactt       240
     ttgcttttat gggccccttc ctccataaaa atattaaaaa ttatatttta tgactgcatt       300
     ggtataaaga tgagaatata atccaggctg aattaaaaca ttttcttaga ctctaaaatt       360
     tcattttttt ctgattttaa aagaaattaa aacattttya tggggcccta aagtattgtg       420
     ggccctaggc actgtgccta ctgtgcctaa tggataagtc nagcctgacc agggcactct       480
     ggtgtgaggt tgaagaaagg aaatttggaa caaagaagcc aagtgctctg gagaagcagg       540
     tgaaacttcc actgccgaac aaaatcagaa tgggagcagc catggttaat aaggttgtgg       600
     aagtttagas cttccagttc acttcmcctt                                        630
//
ID   MSTA        repbase; DNA   ; PRI   ; 426 BP.
XX
AC   .
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6, Last updated, Version 2)
XX
DE   Transposon-like human element long terminal repeat (MSTa subfamily) -
DE   a consensus.
XX
KW   Repetitive sequence; MaLR family; MSTa subfamily; MstII; MER10; MSTA.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-426
RA   Jaiswal K.A., Gonzalez J.F., Nebert W.D.;
RT   "Human P1-450 sequence and correlation of mRNA with genetic
RT   differences in benzo[a]pyrene metabolism..";
RL   Nucleic Acids Res 13, 4503-4520 (1985).
XX
RN   [2]
RP   1-426
RA   Lawrance K.S., Das K.H., Pan J., Weissman M.S.;
RT   "The genomic organization and nucleotide sequence of the HLA-SB(DP)
RT   alpha gene..";
RL   Nucleic Acids Res 13, 7515-7528 (1985).
XX
RN   [3]
RP   1-426
RA   Mermer B., Colb M., Krontiris G.T.;
RT   "A family of short interspersed repeats is associated with tandemely
RT   Repetitive DNA in the human genome..";
RL   Proc. Natl. Acad. Sci. U.S.A 84, 3320-3324 (1987).
XX
RN   [4]
RP   1-426
RA   Kaplan J.D., Jurka J., Solus F.J., Duncan H.C.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome..";
RL   Nucleic Acids Res 17, 4731-4738 (1991).
XX
RN   [5]
RP   1-426
RA   Smit F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons..";
RL   Nucleic Acids Res 21(8), 1863-1872 (1993).
XX
CC   [5] (Consensus)
XX
CC   Replaces MER10 sequence.
XX
SQ   Sequence 426 BP; 85 A; 111 C; 101 G; 124 T; 5 others;
     tgatatggtt tggatctgtg tccccaccca aatctcatgt tgaattgtaa tccccaatgt        60
     tggaggtggg gcctggtggg aggtgattgg atcatggggg cggattyctc atgaatggtt       120
     tagcaccatc cccttggtgc tgtyctcgtg atagtgagtg agttctcatg agatctggtc       180
     gtttaaaagt gtgtggcacc tcccycctct ctctcttgct cctgctctcg ccatgtgacg       240
     tgcctgctcc cccttcgcct tccgccatga ttgnaagctt cctgaggcyt ccccagaagc       300
     cgagcagatg ccagcgccat gcttcctgta cagcctgcag aaccgtgagc caattaaacc       360
     tcttttcttt ataaattacc cagtctcagg tatttcttta tagcaatgtg agaacagact       420
     aataca                                                                  426
//
ID   MSTAR       repbase; DNA   ; PRI   ; 1651 BP.
XX
AC   .
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   MSTa-Mammalian LTR internal retrotransposon sequence - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MSTa subfamily; MstII; MER10;
KW   MSTAR.
XX
OS   Primates
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria.
XX
RN   [1]
RP   1-1651
RA   Smit F.A.;
RT   "Structure and evolution of mammalian interspersed repeats..";
RL   PhD dissertation, Univ Southern California, 1995.
XX
CC   [1] (Consensus)
XX
CC   ORF: bases 48 to 1469.
XX
SQ   Sequence 1651 BP; 436 A; 353 C; 489 G; 371 T; 2 others;
     gaawattggt actgaggagt ggagcattgc tataaagata cctgaaaatg tggaagcgac        60
     tttggaactg ggtaacaggc agaggttgga agagtttgga gggctcagaa gaagacagga       120
     agatgaggga aagtttggaa cttcttagag acttgttaaa tggttgtgac caaaatgctg       180
     atagtgatat ggacagtaag ggccaggctg acgaggtctc agatggaaat gaggaactta       240
     ttgggaactg gagcaaaggt cactcttgtt atacattagc aaagagcttg gctgcatttt       300
     gcccctgccc tagagatttg tggaagtttg aacttgagag tgatgatcta gggtatctgg       360
     cggaagaaat ttctaagcag caaagcgttc aagatgtgac ctggctgctt ttaacagctt       420
     acagtcatat gcgagagcaa agaaatcact taaagttgga atttatattt aaaagggaag       480
     cagagcgtaa aagtttggaa aatttgcagc ctggccatgt gatagaaaag aaaaacccgt       540
     tttctggaga gaaattcaag caggctgcgg agcgaccgtt tgctaaagag attagcataa       600
     ctaaaaggaa gccaagtgct gatagccaag acaatgggaa aaaggcctcg aaggcatttc       660
     agaaatcttc gaggtggtcc ttcccatcac aggcccagag gcctaggagg actgaatggt       720
     ttcgtgggcc aggcccaggg ccccgctgcc ctgtgcagcc tcgggacact gctccctgca       780
     tcccggctgc tycggctcca gccgtggctc aaagggcccc aggtacagct cgagctgccg       840
     cttcggagag tgcaagctat aagccttggt ggcttccaca tggtgttaag cctgcaggtg       900
     cacagaatgc aagagtgaag gaggcttggc agcctccacc tagatttcag aggatgtatg       960
     ggaaatcctg ggtgcccagg cagaagcctg ctgcagggac ggagccctca cagagaacct      1020
     ctactagagc agtgccaaag ggaaatgtgg ggttggagcc cccacacaga gtccccaccg      1080
     gggcactgcc tagtggagct gtgggaaggg ggccactgtc ctccagaccc cagaatggta      1140
     gagccactgg cagcgtgcac cgccagcctg gaaaagccgc aggcatcaga ctccaacccg      1200
     tgagagcagc cacgtgggct gtgcccagca aagccacagg ggcggagctg cccaaggcct      1260
     tgggagccca cccctcgcac cagcgtgccc tggatgcgag acacggagtc aaaggagatt      1320
     attttggagc tttaagattt aatgactgcc ctgctgggtt tcggacttgc gtggggcctg      1380
     tagccccttt cttttggccc atttctccct tttggaatgg aaatatttac ccaatgcctg      1440
     taccaccatt gtatcttgga agtaaataac ttctttttga ttttacaggc tcataggtgg      1500
     aaggaacttg ccttgtctca gatgagactt tggactttgg acttttgagt taatgctgga      1560
     atgagttaag actttggggg actgttggga aggcatgatt gtattttgca atgtgagaag      1620
     gacgtgagat ttgggggaac caggggcaga a                                     1651
//
