ID   ANGEL       repbase; DNA   ; ZEB   ; 308 BP.
XX
AC   .
XX
DT   20-JUN-2000 (Rel. 4, Created)
DT   20-JUN-2000 (Rel. 4, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - ANGEL.
XX
KW   Zebrafish MITE; ANGEL; Miniature Inverted Repeat Element (MITE);
KW   DNA element; consensus.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-308
RA   Izsvak Z., Ivics Z., Shimoda N., Mohn D., Okamoto H.,
RA   Hackett B.P.;
RT   "Short inverted-repeat transposable elements in teleost fish and
RT   implications for a mechanism of their amplification.";
RL   J Mol Evol 48, 13-21 (1999).
XX
RN   [2]
RP   1-308
RA   Izsvak Z., Ivics Z., Hackett B.P.;
RT   "Repetitive elements and their genetic applications in zebrafish.";
RL   Biochem Cell Biol 75, 507-523 (1997).
XX
RN   [3]
RP   1-308
RA   Ivics Z., Izsvak Z., Hackett B.P.;
RT   "Genetic applications of transposons and other repetitive elements in
RT   zebrafish.";
RL   Methods Cell Biol 60, 99-131 (1999).
XX
RN   [4]
RP   1-308
RA   Jurka J.;
RT   "Consensus.";
RL   Direct submission to Repbase Update (2000).
XX
CC   [4] Consensus
XX
SQ   Sequence 308 BP; 109 A; 47 C; 50 G; 109 A; 3 others;
     ttaagggata gttcacccaa aaatgaaaat ttactcaatt tactcaccct yaagttgttc        60
     caaaccttat gagtttcttt cttctgttga acacaaaaga agatattttg aagaatgttg       120
     gactgtaacc attgacttcc atagtaggaa aaacaaatac tatggaagtc aatggttaca       180
     ggtttccaac atttttcaaa atatcttctt ttgtgttcaa cagaagaaag aaactcaaah       240
     aggtttgaac aatnaagggt gagtaaatga tgacagaatt ttcatttttg ggtgaactat       300
     ccctttaa                                                                308
//
ID   LDR1        repbase; DNA   ; ZEB   ; 4963 BP.
XX
AC   AL591172;
XX
DT   04-MAR-2002 (Rel. 4, Created)
DT   04-MAR-2002 (Rel. 4, Last updated, Version 1)
XX
DE   LINE Danio rerio 1.
XX
KW   LINE; retrotransposon; non-LTR; LDR1; Clone dZ48C11 (AL591172).
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-4963
RA   Jekosch K.;
RT   "LDR1: LINE-like element from Dano rerio.";
RL   Repbase Reports 2(2), 15-15 (2002).
XX
CC   [1] Consensus
XX
CC   Putative novel non-LTR LINE-like retrotransposon.
XX
SQ   Sequence 4963 BP; 1628 A; 764 C; 1017 G; 1628 A; 0 others;
     atgcatggaa cggctaaata tttaaaaata atatcctgga atataaatgg ttctcataat        60
     ccagttaaaa gaagaaaatg gttaggttac cttaaatcta aagatgtgga cattgcttta       120
     attcaagaaa cgcatatgat gggtacagag gctgaaaaac ttaaacgtga ctgggtggga       180
     caggtgttta ataattcata taatagtaag aggaatgggg tagcaatatt ggtgcataag       240
     agggtaaatt ttgtcatgat taaacaaaaa aaaggatgag gagggaagat ttatatggtt       300
     ggaagccatg gttgatgatc aaaaagttaa tatttgcaat atttattctc caaataagga       360
     ggatagtgta ttttttcata cggttaataa gataattgga gtacaagcag gtaatcagtt       420
     aatagttgca ggttatttta atcaggtgca agatgcctat ctggatagaa caacctacca       480
     taaaaatatg cccagagaca gattagctat acaattaatg atggaagatt tggggttggt       540
     ggacatatgg aggcttgtca atcctagaga aagagagagt ataccttctt ttcacatagt       600
     cataaatctt acccaagaat agattacttt ctggtttctg gtgatttagt cgagtcagta       660
     gtagactgta agataggcgt gattgctttg ttagatcacg caccagtgga gatgacatta       720
     gacaccaatt ctaggacaat aaaacaaaac agatgaagat tcaatatatc cttgcttcag       780
     gacttaaatt ttagtacaaa attgggagct gacttaaagg aattttcgag attaatgttg       840
     gtaccacaga gaggctggga acagtatggg aatcatcaaa agcttatgtc aggggtaacg       900
     caatacaata tgctagcttg gtaaaaagac tcaacaagga aaaagttaag gacatttagg       960
     ccagaattaa agttttagac aggcaattat cactaaagtt tacagatagt attttaaaac      1020
     aagtctgcaa tctgaaatat cagcttaatg atatttaaaa taggaaagca tagtatgcaa      1080
     tgtttaggat gtgcacagct ttctatgaaa gtggagaaaa ggctgataaa ttgttagcaa      1140
     ggcagttgaa acaaaaggat gctagtttct taatttcagc ttttaaaaat aaaaaaaatg      1200
     aagtggtgac tgcaaacatg gacattaata atgtctttga aaagctttat aataaattat      1260
     atgaagcaga gtcatcccca gactgtacta aatatagaga ttttttctcc aaaattacac      1320
     ttcccacctt gtcctcagac cagcttgaga tgttagatgc gccaatagaa gaatctgggc      1380
     tgcaataatg tcaataaagg ccgctaagtg agcaggttta gatggctttc ctgccgaata      1440
     ttataagaag tatattgaca ttgttgcacc aatattggaa ggggtgtata aagaaacctt      1500
     gttactggag caaatgcccc caacatttaa tgatgcgcta attacgttaa ttcttaaaaa      1560
     ggataaggat ctttatgatc ctgggagtca tagaccagtt agtttagaaa atgttgattg      1620
     taaaatttta tctaaagtat tagcattgag gttggagggc attttatcca atatcgtata      1680
     tatcgaccag gtacgtttta taaaagggag atcttcttct gataatcttc ggtcactact      1740
     tcatctcatc tggcaaagcc gcaatgagaa tgttccagtc gctgcttttt gactagatgc      1800
     gatgaaggca tttgatagag tagaatgggg ctatttaact tatacgttac aaatgtttgg      1860
     ctttgggcca acttttttta agtgggtcaa ggtgctatat tccggcccac gtgcagctgt      1920
     tcttacaaat ggcattattt ctcctttctt taaattaaag cgaggcacca gacaagggga      1980
     ccccctgtct cctttgcttt ttactttgtt tctggagccc ttagcagttg caatcaggaa      2040
     tgacataaga gtgaatggtg tccatttagg agagagggaa tataagtgtt ttttatatgc      2100
     tgatgatatt cttctcttgc tttcaaatcc aagtacatct atacctgctg tgatggatac      2160
     tattgaacat ttttctcaaa tatcaggtta caaagttaat tgggtaaaat ctgaggtaat      2220
     gccagtgtct gtgggatgtt cgttggcgga tgtgagtgct ttctccttta aatggatatc      2280
     aactgggatg aagtatttag gtattaggct ctcaagggag ttgtatgaag ttgttcagat      2340
     gaatataacc cgtatgcttc aaaatgttag tacaaacttt gataaatgga aagtgttaaa      2400
     tttgtctttg tgggggaagg ttaatgcaat taaaatgatg gtatcatcaa ggattaatta      2460
     tatctctata atgatccctt tgaagtttcc tttatacatc tttaagaaat acaatcagct      2520
     agttaaggac tttctgtggg agggaagaag cccagaataa gtatgaaaaa tatgtttacc      2580
     actagaataa aggggggttt ggcattgcca aatatagagc tttataatac tgcatttgag      2640
     atgattaaaa tatgtaaaca ctggtcaggt gataatgtag agggtataag ctggatcgaa      2700
     ataaagaaaa cgctaacttt cccattcagt gttattgatg ctttatctca gaaatcttta      2760
     tattctatta tgaatgggga agttaaccct atactggaac actcatagca ggtctggaaa      2820
     aaaatacata agatgtttaa tttgtcccat tataaacaat gcttttcttc attatggaat      2880
     aaccctgcta ttaagatata tgcaccattg tggaggatag tagcatctgt gtgcaagtcc      2940
     aatataaact aaggttagct gatgctgtgc agcatcttct tttgtttaaa agtaactgtg      3000
     tagttacaaa tacagtgaaa atctgtttgc tagttatacg tacatgaaca cattagtgca      3060
     ttgaatgact ttacgttttt gtgagctaaa ctgggctttt gtgaactaag cattatatca      3120
     gttgatgtaa tatgtttttt tttctgtaaa tttaaacaat cctataaact ttcgtatttt      3180
     tacagaaaat tcctgacaac cactgccggt atttttcagt aaatttaaca gatttttttt      3240
     agcagtgtaa ataaattaga gctaaattat aaatgttgtg ttgattgaac taaacaacat      3300
     taccttacct ttatttaact aacttaagtt cactcaatta aatattcttt ctttaaggca      3360
     gaaatattct ttctttcaaa gtctaagaca gtgggcctcc cttttgacac agcttatcca      3420
     ttggcgtccc cctcctccca aacacgcacg cacacacacg cgcacacgca cacacgaaaa      3480
     attccggatg ttttcctgct acctcatcat gcttggtttc aaggtgtcgc cgaagtttag      3540
     cgggactcat agccaaaata tcttgaaaaa ccacacataa aagtcgtggt tcatcagctg      3600
     gtcctgtcca cgtaaatcct aaactcaaat actgatcatc atattgtcgt cttttgggtt      3660
     taagccctga acttgaaggc tttgaatcgg ggggtctcag aaactgatcc attgtattgg      3720
     caggcatata cctgtattgg cgggcttgcc aaacagaagc aaattcacag ctatggccat      3780
     ctgggtaaaa aaggttttct tatttttgac gtataatttt ttttagcttt gtttaattaa      3840
     aatgtttaaa aataataaaa atacatataa taattaaact taataattat gtttttatta      3900
     tataatattt ttcccgcgca tcccctaaca tgctctggcg cccaccaggg aatgcgcctc      3960
     acactttgaa aacccctgtt ttaaggtaac ttaactcggt tacgtggaac ctgttgacat      4020
     aacaaagtta attaaagcca gcatatcatt tttttgagtg taggaaagaa aacagtctat      4080
     tggaaggatt ggtgtaaaaa aaaaggcctg aaaacagttg atgatttata tggacaaggt      4140
     gcactgtatt catttcagga gttgaaagac aaatttaatc tagtagataa aggggatttc      4200
     tggaaatata tacagctgca tagtagtata agaactgtgg gatataagcc aggagcagaa      4260
     gaaaatgttt tattagggtt tctaaatatg ccaaagtcga tgcaaaccac atcttttgtt      4320
     tataagattg ctgcatgtat ggaaaaagtg atcatttaaa aattatctgg gagaaagacc      4380
     tggaggtgga atttgaagag ggtgaatggg aggcagtagt ttctggtcgt gggggtactg      4440
     tgagagatgt taggagtaaa ctcatacatt acaagataat taatcaatat tactagacac      4500
     cagtaagact gcataggata ggattaaagg aaaataatca ctgttggaaa tgtggtcatt      4560
     ctgtgggcac ttttttacat ttaatgtgga gctgtcattt ggtggctcca ttctggacaa      4620
     gagttattca aaacctagag aaatggctag gacaaccttt accttattcc ccaagagtct      4680
     gtcttcttgg tgatacatcc actttacaga acggaatatc taaaacacag gctggactag      4740
     tcgtcgcagg atatattatt gctgtgagac tggtgctgcg aaattggaag aactcagaca      4800
     ctccctcttt taaagattgg attgagctga tgacttctaa tgcatcatat atgaacgtat      4860
     gttggcaaga cttcaggatt ccacccatac ctttaatcag aaatggggta gctttttgca      4920
     atatttggag agcacataaa aagaaaattg aaaagttgtc aat                        4963
//
ID   TZF28       repbase; DNA   ; ZEB   ; 1613 BP.
XX
AC   U51227;
XX
DT   10-APR-1997 (Rel. 3, Created)
DT   10-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Danio rerio transposon Tzf.28.
XX
KW   DNA transposon; TZF28.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1613
RA   Lam L.W., Lee S.T., Gilbert W.;
RT   "Active Transposition in Zebrafish.";
RL   Unpublished.
XX
RN   [2]
RP   1-1613
RA   Lam L.W., Lee S.T., Gilbert W.;
RT   "Direct Submission.";
RL   Direct submission to Repbase Update (1996)Wan L. Lam, Molecular and
RL   Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge,
RL   MA 02138, USA.
XX
DR   GenBank; U51227; Positions       1    1613.
XX
SQ   Sequence 1613 BP; 531 A; 305 C; 337 G; 531 A; 0 others;
     tacagtgtat ccgcaaagta ttcatagcgc ttcacttttt ccacattttt tatgttacag        60
     ccttattcca attccaaaat ggattaaatt aatttatttc atcaacattc tacccacaat       120
     accccataat gacaatgtga aaaaaatttt tttttttaat tattgcataa aaaaaaaaaa       180
     gctgaaaaat cacatgtaca taagtattca cagcttttgc agtgaagcta aattgagctc       240
     aggtacgttc tgtttcaagt gttcattctt gaaatgtttc agacaggtta attggaattt       300
     cacctgtggt aaattaagtt gatttggaca tgatttgaaa aggcatacac ctgtctatat       360
     aaggtcccag ggttgacagt gcatgtcaaa gcacaaacca aacatgaaga caaaggaatt       420
     gtctgcagac ctccgataca ggattgtcgt caaggcacaa ggctggggaa ggttacagaa       480
     aaaatttctg ctgctctgaa agttccaatg agcacagcga cctccatcat ccatgtggaa       540
     gatgtttgga accaccagga ctcttactag agctggccag ccatctaagc taagtgatca       600
     ggagagaagg gccttagtta gggaggtgat caataactca atggtcactc tgtctagctc       660
     cagccatctt ctatggagag aggagaacct tacagaagga caaccatctg tgcagcaatc       720
     caccaatcag gcctgtatgg tagattagcc agtgttaacc actcctcgtc tggaatttgc       780
     aaaaaggcat ctgaaggatt ctcacaccat aagaaacaaa attctctggt ctgatgagac       840
     taaaattgaa ctctttagag tgaatgccag gcgttacttt tggagaattc aggcaccgct       900
     catcaccagg ctaacaccat cactacagtg aagcatggtg gtggcatgca tcaagctgtg       960
     gggatgtttt ttcagcagca tgaaatggaa gactagtcag aatagaggga agatgaatga      1020
     agcaatgtac agagacatcc tgaagtgaaa accttcttca gagtaatctt gatttcagac      1080
     tggggtgacg gtttatcttc cagcaggaca atgaccgaaa gcacactgcc aaaatatcag      1140
     tggagtggct tcacaacaac tcgatgaata ccttaagtga accagccaga gcccagacct      1200
     aaatcctttt gaatatctct gaagagatgt aaaatggctg tacaccgtcg cttcccatcc      1260
     aacctgatag agtttgagag gtactgcaaa gaggaatggg cacaaattct caatgacagg      1320
     tgagccaagc tgtggcatga tattcaaaaa gagttgaggc tgtagttgct gccaaagatg      1380
     catcaacaaa gtattgagca aagactgtac atttttatat gaacgtgatt ttttgaccct      1440
     tttaatttta ataaatttga aacaatttca aaaaatgttt tttcacattg gcattatggg      1500
     caactgtgtg tagaatgttg aggaaataaa tgaaattaat ccgtttttga ataaggtaaa      1560
     aaggtggaaa aaaatgaggt agaattatga tatcactttc ccgatgcact gca             1613
//
ID   BRSATI      repbase; DNA   ; ZEB   ; 186 BP.
XX
AC   M89944;
XX
DT   22-1995 (Rel. 2, Created)
DT   22-1995 (Rel. 2, Last updated, Version 1)
XX
DE   Zebrafish satellite type I DNA.
XX
KW   Repetitive DNA; satellite type I; BRSATI.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-186
RA   Ekker M., Fritz A., Westerfield M.;
RT   "Identification of two families of satellite-like repetitive DNA
RT   sequences from the sebrafish (Brachydanio rerio).";
RL   Genomics 13, 1169-1173 (1992).
XX
DR   GenBank; M89944; Positions       1     186.
XX
SQ   Sequence 186 BP; 56 A; 36 C; 30 G; 56 A; 0 others;
     gatccagcca taaaatgcat cattcttttt tgttttagac aacatttcat gcactgttaa        60
     acatgttaaa gcaagttgca agtgaaaatc tatgtctctg actgagtttg cattactgtg       120
     atttgacctc tctgctggct gagataagct cattttcaac gtccaattca gaatgtaata       180
     aaacct                                                                  186
//
ID   LINE_DR     repbase; DNA   ; ZEB   ; 647 BP.
XX
AC   .
XX
DT   31-JUL-2000 (Rel. 4, Created)
DT   31-JUL-2000 (Rel. 4, Last updated, Version 1)
XX
DE   Danio rerio LINE-like sequence - a consensus.
XX
KW   LINE_DR.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-647
RA   Okada N., Hamada M., Ogiwara I., Ohshima K.;
RT   "SINEs and LINEs share common 3' sequences: a review.";
RL   Gene 205(1-2), 229-243 (1997).
XX
RN   [2]
RP   1-647
RA   Jurka J.;
RT   "LINE_DR.";
RL   Direct submission to Repbase Update (2000).
XX
CC   [2] Consensus
XX
CC   An internal portion similar to a 35 bp SmaI SINE element
CC   is not included.
XX
SQ   Sequence 647 BP; 167 A; 183 C; 103 G; 167 A; 24 others;
     aactaaactt ctctgamcac attwctagaa ctgctcgatc gtgcagattc gcactctata        60
     acatcagaaa gatccraccc ttcttwtctg aacatgcagc tcaactcctt gttcaagctc       120
     ttgttctctc caaactggat tactgcaact ctctactagc tgggcttcca gctaactcta       180
     tcaagcctct tcaactgctc cagaacgcag cagcacgagt ggtcttcaat gaaccgaaac       240
     gagcacatgt cactccgctg ctagtccgtt tgcactggct gccagttgct gctcgcatca       300
     aattcaaagc tctgatgttt gcctacaaag tgacttctgg ccttgctcch tcttatctgc       360
     tctcacttct gcagatctat gtgccctcca gaaacttgcg ttgtgtgaat gaacgccgcc       420
     tcgtggttcc atcccaaaga gggragwaat cactttcscg aatgctcack ctsrcrytca       480
     atctgcccag ttggtggaat gaactcccta actgcawmas aacrgcagag tcactygctr       540
     yyttcargaa acgactaaaa actcaactat ttagtctcca cttcacttcc taatctgcaa       600
     ttgcctctyt gaatatcaca ctaactgtac ncacaaaaaa aaaaaaa                     647
//
ID   CR1DR1      repbase; DNA   ; ZEB   ; 3984 BP.
XX
AC   AL591176;
XX
DT   04-MAR-2002 (Rel. 4, Created)
DT   04-MAR-2002 (Rel. 4, Last updated, Version 1)
XX
DE   CR1 Danio rerio 1.
XX
KW   retrotransposon; non-LTR; CR1; CR1DR1.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-3984
RA   Jekosch K.;
RT   "CR1DR1: CR1-like repeat from Danio rerio.";
RL   Repbase Reports 2(2), 7-7 (2002).
XX
CC   [1] Consensus
XX
CC   Putative novel non-LTR retrotransposon similar to CR1-like
CC   retrotransposons.
CC   Contains one reading frame (pos. 1-3984) with two stops.
XX
SQ   Sequence 3984 BP; 1215 A; 949 C; 711 G; 1215 A; 0 others;
     atgccgcttc cgtctctgtc cttgtgtgca ggagaagcat cgatggaggc gttggagctg        60
     gagctggaag aagtggagtc ccagattcgc gcgctggtgg tgagaaggtc gctgctacgg       120
     gaacaacttc gtgttgtacc taatgctaag gccgtctcat cacctaaggt acgtggaaat       180
     tacaaccaca tcattccctc tacctcaacc ccgcgtcctt ctctgtccag gcccagcgca       240
     cccggggcgc ggctcagcca ggcgtcgttc acgccgacac ccggctacca cggcgcctgg       300
     gtgcagccgc gcaaggtgct tcccagatcc cggggcagaa cgtctcctcc tgtgttcgag       360
     atctccacgg agaaccgctt ctcccctctc cgcgagtcgg gtcccgatgt ggccatcatc       420
     ggtgactcga tcgttcgtca cgtccgtgcc gcctcctcaa aaggtaataa agtacgtact       480
     ttctgctttc ctggtacccg tgtgagaaat atttctacac agattccaac catcctgggc       540
     gctgccgaga gccctggtgc cgttgtcctc cacgtgggga caaacgacac cgggctccgg       600
     cagtcggaga tcctaaagaa ggacttcagg agcctgatcg agacggtacg acgcacctcg       660
     cccgccacgc agatcatcgt ttctgggccg cttcctacct accgccgagg aaatgaaagg       720
     ttcagtagac ttttagctct gaatgaatgg ctaataacat agtgtaaaga acaaaaattg       780
     ctctttgcta ataactggaa tcttttctgg gagcgtccta ggctcttccg tcctgacggc       840
     ctgcacccca gtcgagccgg agctgaactc ctgtcggaca acatctccag attacttcgc       900
     accatctgac tagcaggtaa aaattcacac tatagccacc tagactcttg ttcaccccac       960
     ttaaacatca gtaacgcata tctggcgaat cctatagaga ctgtgtctgt tcctcgtatt      1020
     attagattaa gaaataaacg tactgtgtgc tccagaaaaa atctattaag aatcaaacca      1080
     gaaaaaccag tagaaagtga aaatacaaat ttcgtaaaac ttggtctcct aaacatcagg      1140
     tcacttgcac ctaaagcact tatcattaat gaaataataa cagaaaacaa tgttaatgca      1200
     ctctgtctca ctgaaacctg gctgaaacaa aatgactata ttagcttaaa tgaagcaact      1260
     cctccaggat tcttatataa acatgaggct cgtcaaactg gtcgtggtgg tggagttcca      1320
     tcaatcttta gtgatttcct taatattaaa cagagaaacg gacttatgtt tagctccttt      1380
     gaagtattat cgcttaatgt tcagcttcca gatactatac aaaaacctat gttatctctc      1440
     gctttaatca ccatatatag acccccagga ccctatgtca aatttctaaa agaattttct      1500
     gattttattt ctgacttact agtcaaaact gataaaatgc taattgtagg tgactttaac      1560
     atccacatag atgacgctaa tgatacatta ggactcgcgt ttatggattt aatacactca      1620
     cttgggataa agcaaaacgt tgtgggccca acccatcgct taaagcatac attagatcta      1680
     attctgtctt atggaatcga ggttattgac gaagacatta taccacaaag tgatgatatt      1740
     acagatcact acctcttact atataagctg tgtttacctg aaatcagcaa acccgctcca      1800
     atactccgcc ctagtagaac tattgttccg tcaactaaag atgaatttat caataactta      1860
     cctgatcttt ctctatttcg taatgcacct gcaaactcaa atgatcttga tgtagtaacc      1920
     agcagtatgg atgccatctt tactagcaca ctaaatactg tggcacccat caaattaaaa      1980
     aaggctagag agattaaaac tataccatgg tataatagtc atactcgtgc gctcaaaaca      2040
     gcaacccgtg ccctggaacg taaatggaaa aaaacaaatt tagaggtctt tagaattgcg      2100
     tacaaagaca gtatgtccag ctataggagg gctctaaaat ctgccaggac cgagcacctg      2160
     cgcaaactga tagaaaataa tcataacaat cctagatttt tatttaacac catctctaaa      2220
     ttagctaata atcggtcatc cttggaacaa actactccac cgcaaattag tagtgatgac      2280
     ttcatgaatt ttttcagtaa taaaatagaa ggctttagac agaaaatagg agatgccaaa      2340
     ctttctgcac cggcttatac tccaaatcct gtaaatattt cattaaatca taataataac      2400
     ctacactgct tcaaaatcat agaacatgaa gagttagtaa aaattataaa tagctctaaa      2460
     ccagctacgt gtatgctgga ctcaattcca acaaaattac tgaaagagct gctacctgct      2520
     ataggagaac ctcttcttaa cattatcaac tcttctttat ctataggcca tgttccaaac      2580
     tcttacaagc tagctgttat taagcctatt attaagaaac cgcaactaga caccaacaac      2640
     ttagctaact ataggcctat ttcaaatctt ccatttatgt ctaaaatact agaaaaagtt      2700
     gtttccactc aattatgctc ttttctgcag acgaacaata tttttgaagt gtttcagtca      2760
     ggtttcaggg ctcaccacag tacagaaacc gccttagtga aaataaccaa cgatttactc      2820
     ttagctgctg accgagggtg cgtctcgcta ttagttttac tcgatcttag tgcggcattt      2880
     gataccattg accacaatat cctcataaat cgcttaaagt ctacaggtgt ccagggacag      2940
     gctctacaat ggtttaagtc atacttaact gaccgctacc aatttgtgaa tcttaatgga      3000
     cagccttcac aaatctgccc agtaaagtat ggggtgcctc aaggatcagt tttaggccct      3060
     ttactgttta caatttatat gctacctctg ggagacatta ttagaagaca tgggatcagc      3120
     tttcactgct atgcagatga tactcaatta tatatttcaa ctaaacctga cgagacgtct      3180
     gaactttcta aactaactga gtgtttcaaa gacatcaaag actggatgac cgacaatttt      3240
     cttctcttaa actcagacaa aacagaaatg ttacttattg ggcctaaatc ttgcacacag      3300
     cagatctcgc aactcaattt acaattagaa ggatacaaag ttagctttag ctctactata      3360
     aaagatttgg gtgtcatatt tgacagcaat ctaactttta aaaaccatat atcccatgtc      3420
     actaaaactg ccttctttca tctaagaaat atcgctaaat tacgaaatat gctatccatc      3480
     tcagatgcag aaaagctagt ccatgctttt atgacttcga gactggatta ctgtaatgct      3540
     ctatttgctg gctgcccagc atcctctatt aacaaacttc aattagtaca aaatgcagca      3600
     gccagagttc tgaccaggtc tagaaaatat gatcatataa ccccaatttt atcctcctta      3660
     cactggctgc ctgttaagtt tcttattgaa cttaaaatat tacttctcac ccataaagct      3720
     ctaaataatc tagctcctgt ttatctaacc aaccttctgt ctcgctacaa accaactcgc      3780
     tctttaagat ctcaaaattc agggcttctg gtagtaccta gaatagcaaa atcaagtaaa      3840
     ggaggtcgag ccttctcttt catggctcct acactctgga atagccttcc tgataacgtc      3900
     cgaggctcag acacactctc ccagttcaaa actagattaa agacctatct gtttagtaaa      3960
     gcatactctc aatgcatcac ctag                                             3984
//
ID   TDR10       repbase; DNA   ; ZEB   ; 655 BP.
XX
AC   .
XX
DT   04-MAR-2002 (Rel. 4, Created)
DT   04-MAR-2002 (Rel. 4, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR10.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-655
RA   Jurka J., Drazkiewicz A.;
RT   "TDR10: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2(2), 20-20 (2002).
XX
CC   [1] Consensus
XX
CC   TA-target site duplication.
XX
SQ   Sequence 655 BP; 164 A; 175 C; 149 G; 164 A; 12 others;
     taagggcgta ctcacactak gyacagttgc cttgaaccgk gccgaagcac gcttgtcccc        60
     cctcccctct cccccgacgg cctgcactca cattgcattc gagcccgagc acgcttacgt       120
     catcgatgat gcgctgttca gtttaanaga agagaagcgc tctcgctcag cacagtggag       180
     attgctttag ttatattgtt ttagtcgttt gatatgcagt gacacgcagt caaatatttt       240
     gctgaacaga tcaaccactt ttgacgctca taaataatca taaaagtcct cgtgctgcag       300
     gwattaggag gtttgctgaa ggtgcagctg tcatgcagtg aggggtttgc gtctttaata       360
     awctacgaca gtttgcgttc attgaamagt aagaatgatt aataaatcca tatgaaacag       420
     tcccttaaaa gtsacgtckc gtcttcagtt tcgggctcag gcgcgctttg cactcacact       480
     acaagcgtac cgcgccaaag cccaagtgaa ccrcgctctg gcacacctct tccaaccggg       540
     ccagggccgg ccaastgaac catgcctgag cccaattcag agcactcaca cttctcaaac       600
     gaaccgggaa acgggcctgg gcacngttcg gatagcatag tgtgagtacg cccta            655
//
ID   CR1DR2      repbase; DNA   ; ZEB   ; 2898 BP.
XX
AC   AL591213;
XX
DT   04-MAR-2002 (Rel. 4, Created)
DT   04-MAR-2002 (Rel. 4, Last updated, Version 1)
XX
DE   CR1 Danio rerio 2.
XX
KW   retrotransposon; non-LTR; CR1; CR1DR2.
XX
OS   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-2898
RA   Jekosch K.;
RT   "CR1DR2: CR1-like repeat from Danio rerio.";
RL   Repbase Reports 2(2), 8-8 (2002).
XX
CC   [1] Consensus
XX
CC   Putative novel CR1-like non-LTR retrotransposon with one open
CC   reading frame (pos 1-2898).
XX
SQ   Sequence 2898 BP; 749 A; 860 C; 474 G; 749 A; 0 others;
     atgtgttttc taattcctgt tgttactaac actcgcaaaa cacgggaggt gcgctgcagg        60
     cgtaatcctc acaaccttcg ttcaatacat gtatctacta tttcacaact ctctctctcc       120
     gtgggcctct ggaattgtca atcagctgtt aacaaggctg attttattac ctccatagct       180
     acatattctg actataatct catggctcta actgaaacct ggttgaggcc ggaggacact       240
     gctacacatg ctactctttc tgctaatttc tctttttccc acactcctcg tcagacaggg       300
     agagggggtg ggactggact actaatttcc aaagaatgga aatttactct gataccgtcc       360
     ctgccaacaa tcagctcctt tgaattccat gcagtcacca ttatccaccc cttctacata       420
     aatgtggttg tcatctaccg cccaccaggt aaattaggtc acttcctaga tgaactggat       480
     gttcttctct catctttttc taattttgcc actcccttat tggtgctagg tgacttcaac       540
     atttacgttg acaaaccgca agctgcagac tttcagactt tgcttgcctc ttttgaccta       600
     aaaagagcac ctacttctgc tacccacaaa tcaggtaatc agctagacct tatttacaca       660
     cgacactgct tcactgatca aacaatagta actccactac aaatatctga tcatttcctt       720
     ctgtctctca acatccacat tactcctgag ccgccacaca ctcctacact ggttaccttt       780
     cgcagaaacc tacgatctct ctcacccaat agactatcca ccattgtttc agactctctt       840
     cctccatctc gcaaactcac tgcacttgat tcgaacagtg ccactaatac actctgctcc       900
     acactagcat catctctaga ccgattatgt cctcttgcat ccaggccagc ccgtgccagt       960
     cctcctgcac cctggctctc ggatgctctc cgtgagcatc gctcaaaact tcgggctgcg      1020
     gagagaattt ggcggaaaac taaaaatcct gcacatctct taacatacca aactcttctg      1080
     tcctctttct cagctgaggt tacttctgca aagcagacgt attaccgtct gaaaatcaac      1140
     aatgccacta atcctcgcct actttttaaa acattttcct ccctcctcta tcctcctcct      1200
     ccacccgcat cctccacact tactactgat gactttgcta cattcttctg caccaaaact      1260
     gcaaaaatca gtgctcaatt tgctgcacct acaacaaaca cgcaagatac aacaccaaca      1320
     ccacacacac tcacctcttt ttctcagctc tctgagtctg aggtgtccaa acttgtgcta      1380
     tctagccatg caaccacctg tccactcgat cccattccct ctcatctctt gcaagccatc      1440
     tctcctgcag tcataccaac actgactcac ataattaaca catctcttga ctctggttta      1500
     ttccccacta catttaagca ggctagggta accccactgc taaagaaacc caacctggac      1560
     catacgctac ttgaaaacta cagaccagta tccctgcttc cattcatggc caagattctg      1620
     gagaaagtag tgttcaatca agttctggac tttcttactc aaaacaatct catggacaac      1680
     aagcaatccg gctttaagaa aggccactca actgagactg ccctgctctc ggtcgtggag      1740
     gatctcagac tggctaaagc agactctaaa tcatcagtcc tcattttgct ggacttgtca      1800
     gctgcttttg acactgtcaa ccaccagatc ctgctatcta cgcttgagtc actgggcgtt      1860
     gcgggcactg ttatacaatg gttcagatct tacctctctg acaggtcatt cagggtgtct      1920
     tggaggggag aggtgtccaa cctacagcat ctaaacactg gggtacctca aggctctgtt      1980
     cttgggccac ttctcttctc catctacaca tcatctctag gaccagtcat ccagagacat      2040
     ggattctcct accactgcta tgctgatgat acccagctat acctctcttt tcatcctgat      2100
     gatccctcgg ttccagctcg tatctcagcc tgcctgttgg atatttcaca ctggatgaaa      2160
     gatcatcatc ttcagctgaa cctcgcaaaa acggaaatgc ttgtagtttc tgccaacccg      2220
     actctacacc ataacttttc aatccagatg gatggggcaa ccattactgc atccaaaatg      2280
     gtgaaaagcc ttggagtaac gattgatgac caactaaact tctctgacca catttctaga      2340
     actgctcgat cgtgcagatt tgcactctat aacatcagaa agatccgacc cttcttatct      2400
     gaacatgcag ctcaactcct tgttcaagct cttgttctct ccaaactgga ttactgcaac      2460
     tctctactag ctgggcttcc agctaactct atcaagcctc ttcaactgct ccagaatgca      2520
     gcagcacgag ttgtcttcaa tgaacctaaa cgagcacatg tcactccgct gctagtccgt      2580
     ttgcactggc tgccagttgc tgctcgcatc aaattcaaaa ctctgatgtt tgcctacaaa      2640
     gtgacttctg gcctagcacc ttcgtatctg cactcacttc tgcagatcta tgtgccctcc      2700
     agaaacttgc gttctgtgaa tgaacgtcgc ctcgtggttc cagcccaaag aggaaaaaaa      2760
     tcactttcgc gaacgctcac gctcaatctg cccagttggt ggaatgaact ccctaactgc      2820
     atcagaacag cagagtcact cgctattttc aagaaacgac taaaaactca actatttagt      2880
     ctccacttca cttcctaa                                                    2898
//
