ID   Mariner-N6_CR repbase; DNA   ; CHL   ; 414 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N6_CR is a family of nonautonomous Mariner DNA transposons - a
DE   consensus sequence.
XX
KW   mariner superfamily; Mariner-N6_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-414
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N6_CR, a family of nonautonomous Mariner transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 134-134 (2004).
XX
CC   [1] Consensus
XX
CC   Mariner-N6_CR is a family of nonautonomous transposons. The
CC   consensus sequence is less than 5% divergent from ~50
CC   Mariner-N6_CR copies. Features of Mariner-N6_CRs include
CC   imperfect 79-bp terminal inverted repeats and TA target-site
CC   duplications.
XX
SQ   Sequence 414 BP; 95 A; 115 C; 98 G; 95 A; 0 others;
     tggctgtgtg cacattattt gacatggtca ggttgcgaca tgtcgacatg tgaaatgcga        60
     catacaacat tgcgacatac caagactcgc ccacatttgc atagctacgc gtcctggagc       120
     ccatttaagt aacatctccc agctttgcgg cggtgtattg cgctagcgta gccacaagct       180
     cctcccactg gccgcaccct acgccacgcc accaccaccg tggcaaccga gacacgtttt       240
     gttgtgtgcc acggcgttcc acgcttacca gaggcatatt gaatgcatgc acaatatgtt       300
     tggcgggttt ggatgcgttt gggcggtatg tgcattatgt cgcaatgtcg tatgtcgcaa       360
     ttcacatatc cacatgtcgc atcctgacca tgtcaaataa cttgcaagct gcta             414
//
ID   SINEX-1_CR  repbase; DNA   ; CHL   ; 535 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   SINEX-1_CR is a putative nonautonomous non-LTR retrotransposon - a
DE   consensus.
XX
KW   SINE; SINEX-1_CR; nonautonomous non-LTR retrotransposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-535
RA   Kapitonov V.V., Jurka J.;
RT   "SINEX-1_CR, a putative SINE-like non-LTR retrotransposon from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 45-45 (2004).
XX
CC   [1] Consensus
XX
CC   About 100 copies of SINEX-1_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   Usually SINEX-1_CR are flanked by 15-bp target site duplications.
XX
SQ   Sequence 535 BP; 119 A; 126 C; 161 G; 119 A; 0 others;
     atcaccggat cgctaactca gttagcgatt tgactcgtcc ttacggcaga agggacccgg        60
     gtacgaatcc ggataaaagc ccaattatgc aaaaggcgaa agattggtgc gaaaccgatt       120
     ggtgatccca cgaacgatag gtaattgccc ttagtggcaa ttgcgggctt atgcccgctg       180
     caacctagaa aggtcgtggt gcagaagtcc gatttagtgg cgaggtccaa ggttcaagac       240
     aaggctcaag atccaaggct cgaggaggag cgccatggct cctcggtttg cacgaactgg       300
     cagtgctcca ctactataac gcggcgtttc cctagctcga tatgctaggt gtgcaggctt       360
     ggatgtagtg gactttgaag agcggcctag gacttggagg ttgtagtttc ggaggttgtg       420
     actctttcgt ggtgaggcgt cagcgtgagg ggggcgggcc ctctcgccct agtcaccttg       480
     ccccgttaat ccatgccagg ccctatgggc cggcgttgta attattatta ttatt            535
//
ID   DNA3-1_CR   repbase; DNA   ; CHL   ; 1989 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   DNA3-1_CR is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   3-bp TSD; DNA3-1_CR; nonautonomous DNA transposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1989
RA   Kapitonov V.V., Jurka J.;
RT   "DNA3-1_CR, unclassified nonautonomous DNA transposon present in the
RT   green algae genome.";
RL   Repbase Reports 4(7), 193-193 (2004).
XX
CC   [1] Consensus
XX
CC   The genome contains ~20 copies of DNA3-1_CR that are 99%
CC   identical to the consensus sequence. This transposon is
CC   characterized by 3-bp target site duplications and 30-bp
CC   terminal inverted repeats (4 mismatches).
XX
SQ   Sequence 1989 BP; 410 A; 539 C; 570 G; 410 A; 0 others;
     ccctatggca cccaaatggt ggtaacgatc caaaaacggg ggtgacgatc cccggacagg        60
     gggtaacgat tgtttcgggc ccgcacggcc tggcacgccc aggacgcaag ccaagtggtg       120
     ctgtggtcac ctcttagcta cttgtcatgc atacgcacat tgcggactgg gcggagtgcc       180
     tttcgtcgcc gacaagtgaa catgccgaca ttctagtctg caaagtgcgt attgtagtga       240
     cagtttgtgt taaaacagtc taatatgtga agccttaaac ttatgtagtc tttgcgctcg       300
     cgaacgagga agtctggggg ctgtaggccg actgtgtgac attgtgacag ggacccttgg       360
     gcgtggtaac gaccctaagc caggggtaac ggggccttcg cgaggggtaa cagggttcct       420
     gcatggggtt ctcgcgggcc tgacttaaca agcagcatag agcggcccct gatactacta       480
     cacatatact gatatagtac catacatata ctgatacact gcacttcatg ccggtgccgc       540
     tgcacttctg ttcctctccc ccactttgct ctctcgcgct tgctacttct cttcgtaaca       600
     caaatttatg ctagctcaaa tgtcagtaga acaagagctg gcggcagacg ctgcttggct       660
     ggcttgggac gcgagtcctc acgctgctga ctgctcgttg accggcttgg caacgctgct       720
     cacacgtcag ctgcagccag ctattacgtg agagaaacga ctatgcctca taatctatca       780
     gctgcgcttc aaatgtccga ccgagaagtc tcggtcgccg gcgtcaacaa cgccattcaa       840
     catcgcgttc tgtcaacatc accctcgccc cgcacgccat agtccgcagg ttagtccgca       900
     ggttagtccg caggttgaat gacgatggga tgcgttgaac ctagtggtac ctcgcaagcc       960
     agtgtgcatg gttcatcttc tcgcgctgtg ttgggttgtc tggtggagcc cccgcctaca      1020
     actagtgact gtctgctgcc tcccttacca gcgctcgctg taaggtgttt ttatggctcc      1080
     cttgccacgg tgccttgtgt ctcacatacc accccgcccc cctccgcacg cacacaccct      1140
     gccccgcgac agcttgctgc ccaacccctg ttgtacccta tggaccgtac ggttggctgg      1200
     actgccccta cacctccagc attgtgctca tcaacggtga gtgtccgtga cacgtgtggg      1260
     cgcacacaca tgcacatgtg cacacagaca cgccttgtgt ggtaggcccc gtgcactgcc      1320
     aagcactctg tccatggctg gccttgacat gcattggcac ctacccgtct tgtggcagac      1380
     gattaactgg gtgtgtctat gtgtgtgcac gcgtgcatgc aggcgctgcc ggtggaagca      1440
     aaactacagg agccagcgtg acaccagctg tctggcgcta gagatggagg cgggcgcggc      1500
     ggcgccagtg gcatagtttg gcatggtagc tgtggtggcg gcgggcgtca aggtggtggg      1560
     tcagagacgt tgtgcccagc agacatgcaa gtggttgctg ccagtggcta gttgcacgtt      1620
     cacacgcaga catgacttgg cgtattgttg catgtacgta tggacttgcg gtagtgttgc      1680
     ataagtgttg catgagcatc tgcacttgtc gtgctatcaa gccttgacag atggctagca      1740
     tgtggagtag cggtaggact acatagttct tacgttagta ctgatgtagg ccttcagcaa      1800
     agcacaaggc tgccatgtaa cgggcctcaa agtgatggtt actggtgtgc cttgtagacc      1860
     gtgacgaggc tgttaccatg gctggttaag atggtaagca gatcgtagcg agatcgtaac      1920
     gatgccggag gggtaacgat ctacgaccta ggtaacagcg atcgtaacga tcgtttgggt      1980
     gccataggg                                                              1989
//
ID   Novosib-N1a repbase; DNA   ; CHL   ; 781 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   Novosib-N1a is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; Novosib superfamily; Novosib-1; Novosib-N1;
KW   Novosib-N1a.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-781
RA   Kapitonov V.V., Jurka J.;
RT   "Novosib-N1, a family of nonautonomous Novosib transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(7), 195-195 (2004).
XX
CC   [1] Consensus
XX
CC   Novosib-N1a is a subfamily of Novosib-N1 nonautonomous
CC   transposons. The Novosib-N1a and Novosib-N1 consensus
CC   sequences are 76% identical. Novosib-N1a elements are flanked
CC   by 8-bp target site duplications and contain 17-bp terminal
CC   inverted repeats. This subfamily is composed of ~20 copies ~97%
CC   identical to their consensus sequence.
XX
SQ   Sequence 781 BP; 161 A; 233 C; 221 G; 161 A; 0 others;
     caacccggtc tcacccggga cgtgcccata cacgcggcac cgtccaaggc ccaaaccgtc        60
     ccaagtgcct attcatgaca tatgtatgtt atgaatagct gttatgggcc ctgccgcggc       120
     ctgtccgctc gccgagctcg cgaaatgcag ctgcatgccc cgacattttg cgcgaagagc       180
     tgcttttagc ccccgtagag actctctagc atctacctat agctacgtat aggcacggca       240
     acgttgagat attgaggaaa tggctgcttg agggacctcg gtcgcgaaat ggccggtcgg       300
     ctgattctcg cattttgctc cgggatacat tccaatgcgg tataatgtgt ctaaatagca       360
     tgttgagtga gtttatgccc cctccagcac gtttccgctc gaccgtgccc gcacgtaccc       420
     atcgagctcg ctggctggct ggccaaaacc cgtccatttc gaccgcaggc gagcgcagac       480
     cgccctgcca ctcaaccagc aagtcaatgc tatgtatgag aagtgcctga gagcgcgggg       540
     gagtcagggg tgaccttttt gccgtcgggg aaccccccta tctgccccca agaccccccg       600
     cacggaaagg gccgtacggc actggggcaa atgtcggact acggatctga cacgctggca       660
     aggtttgcgc aagctgccca taaggttaga ttcctagtcg gacttttgcc ccgaccggtt       720
     ttgcggggtt gaagcgagtg caaatttgga cggtgcccac aacgcgggtg agaccgggtt       780
     g                                                                       781
//
ID   Copia3-I_CR repbase; DNA   ; CHL   ; 5340 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Internal portion of the Copia3_CR retrotransposon.
XX
KW   5-bp TSDs; Copia3-I_CR; Copia3-LTR_CR; LTR retrotransposon;
KW   COPIA superfamily; endonuclease; protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-5340
RA   Kapitonov V.V., Jurka J.;
RT   "Copia3_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 106-106 (2004).
XX
CC   [1] Consensus
XX
CC   Copia3-I_CR is an internal portion of the Copia3-CR LTR
CC   retrotransposon, whose LTR is deposited in Repbase as
CC   Copia3-LTR_CR. Copia3-I encodes a 1670 Copia3_CRp polyprotein
CC   (pos. 69-5078) composed of the C2HC zinc finger, protease,
CC   endonuclease, reverse transcriptase, RNase H. The PBS is complementary
CC   to an internal portion of tRNA Met.
XX
SQ   Sequence 5340 BP; 847 A; 1736 C; 1847 G; 847 A; 0 others;
     ggttatgagc cccgcttgtc gttaattcgc tcgcggttgg caagccttat tatcgctagc        60
     taggtaggat ggatgactcg tcctcgggac tggtcaagtt caagcagctt caagatgatg       120
     ctgcgaacta tttcacttgg ctcatacagc tctatgactt cctcacgact cgtaaggttc       180
     cgctgggagt gtatttgtat acctcgacgc cacctggtcg tactgctctc gagctggccg       240
     acgagaacgg ccaggcgctg agctggctcc gcacgtcgtg cacgcccaac gttgcccggc       300
     agctgtggca agcccccgat gccgtcaccg ccctggcgta cattcagggg ctgttccggg       360
     cctctgcagc tcagaagctg cagcagtgcg acatggagcg cagctgcttc cagctggaag       420
     aaggggagaa catgtcgcaa tactttgcgc gtgccagtga cctgcgcgac aggatttacg       480
     cgctcggcgg cacctgggag gagcccgccg tgcgactgcg cctgttgaat ggtctgccgc       540
     tgccggcgta tgaggtgctg gttgagatct gcaactccca gccccagcag actgttgcgg       600
     agctgcgtgg ctacctcatg cagcacgagg tgaccaagcg cttccggcag gccaacggcg       660
     gacacgtggg caacgtcaac cgcagccgcg gcggtaacgc tggcggtggc ggcggcgcag       720
     gcggcagcag cagcagcggc ggcattgtct gccactactg cgagcagccc gggcacatca       780
     agcccaactg cgccgtgcgc caggccgacg tcagcgctgg catccagcgc gcctccattc       840
     gctcgcccgt gcagctacag cagcagcagc agcagcagca gcagcagaag aagcacggcg       900
     gcggcggcgg cggcggcggc ggcagcggaa gcggagatgg ggccaagaag cgcggcaagg       960
     gcggcggcgg gggttcgggt gccaggggtg gcgcccggtc cgccgcctcc cggcccgcgc      1020
     atgtgctggt tgtgagcagt gttgacgact gggctgagga ctaccccagc agcagtctga      1080
     tcgtgcacac ctttggcgcg gagccggcga gctccggcgc cattagcagc tacagcatgg      1140
     ccgatgacgg cgtgcccagc gcctccgtga ttggggacca cggcggctgc agtagcacca      1200
     gcaccttcag ctacagctcg gccggcaacg gcctcagcag cagtagctac agcggcagcg      1260
     ccgcgccacc cccgggcgcc ggcagcagcc tgctgtccaa cacctaccgc gctgtcaccc      1320
     gggacttcgg cggtagcaac agcagcagca ctggagcagg agtttccagt tgcagcagcg      1380
     gcgtagccgg gcctgcgggc ctcggcggcc gcgtgctcgt cgtctgcgat gtgagcagag      1440
     gcagcatgct gtcccccagt gcgggcggtg gcggcagtga tgatgcgtca ggaagcgtcg      1500
     gcggcagctt tgcgagcgcc gccgccttcg atgtgccggt gattgactcc ggcaccttcg      1560
     cacacatcac gccgcaccgc cgcctgctcc acgacttcgt ggtgcgccca agagtgagtc      1620
     atgtgctgtg gggtgatgga cgcagcagcc cggtcggggg atcggggact ctccggatgc      1680
     tctctgggca gcagcgcgtt gacgtgacgg gcgttctgta cgtgccagac gcccacctct      1740
     ccctgctatc ggtgcgccgg ctggcgtcca gcggcgctaa ggtagcgttc gagggggagt      1800
     cggcgactgt cgagctggct ggccgctcca ttctcagcgg ccgcgtgcgt gacggtcaat      1860
     atccgctgtc tgtgactatg ctgccggtcc tgctggcggc gcccgccatg gcgccgccgg      1920
     cgattggcgg cggcaccgcc gcgcctgtga gcggcggcgg cgccgctgcc actggcagcg      1980
     acagcagctt tcttccttct tccgccgccg cgccctcggg cagcggcggc accaccagca      2040
     gcagcctcaa cagctccggc gcaagcagca gcagcaacgg caccgccgcg tcttcgggcg      2100
     gcggcggcac cgtcagcagc agctccagct cgtcggtgac tgctctgagc gctgctcacc      2160
     ggctgcaccg gcgtttcggc catgttggct ggcattcgct gatgcagatg gtgaacggct      2220
     ccctggtcac tggccttgac gttgacctga gtgctctcag ccaggcagcc gagtcagtgt      2280
     gcagcacgtg cgtcgaggca aaggcagcct cttcgccctt cccggacagc agcagcgagc      2340
     cgcagcagcc tctggctctt gcgcattctg atgtgtgcgg ccctatgccc gtgatgggcc      2400
     gcggtggctc tcgctacttc atcacgctgc tagatgatgc cacgggggtg tcagctgtcc      2460
     ggatgctcac caccagagaa cacgctggtg aagcgctgca ggagatgatt gtgcagctgg      2520
     aaaattgcca ccctggcggc ggcaagctgc gcaacctccg cagcgacaac ggtggtgaat      2580
     accgttcaga ggagctgcag cagtggctgc gcgagcgcgg taccgtgcag cagttcagcg      2640
     cgccttatat gccgcagcag aacggagccg ctgagcggct caaccgcacg ctgatggacc      2700
     gcacgcgcgc cattctgttt gacgctgcgc tctcctccag cttctggcct gaagctgtca      2760
     cgtatgccag ccacttgcgc aacctgagcc cctcctccag ctgcagtagc acgccgtggg      2820
     aggcgctcac cggcgtcaag ccggacatct ccagcctgcg cactttcggc tgccgcgtct      2880
     acgtcaccct gcccgccgac cagcgctcca agctcaaccc gcgcgccgac atcggcacgt      2940
     acctgggcct gcagcgcaac tctgccgcgt atcgcgtcat ggtcggcggc aaagttgtgg      3000
     taagccggga cgtgcggttt gatgaggacg tgcggggacc ggcgtcgcgc ctggcgggcg      3060
     tgccgttcgg tagcaacagc agtgctgcag cgccggcggc tgtcaacccg ccggcggtcg      3120
     ccgagtcgcc ggcgccctcg ccggcgccgg cggccccgcc ctcacggcca gccacccgca      3180
     gtcagcgccc tgtgctcacg ccgccgctca gtgctttcgc ctcggcggcg ggcggcggaa      3240
     gtcacagcaa cagcagtaac agcgccgcct cggctgcagc agcggcagca gctcagttgt      3300
     tcgatgagga cagcgacgat gacgagacgc cgccgctggc gccaccctcg gatgacgagg      3360
     acagctatgg cgtcagcact gctacgactg cgggggtggg cgagcccagc agctatgctg      3420
     aggccagcag tgggcctcat gcggctgact ggcgtaaggc tatggaggag gagatggagt      3480
     cccagcgcga taacaagacc tgggagctgg cggcgccgcc tccgggtgtg cgtctgctgg      3540
     ccaaccggtg ggtgtacaaa ttgaagccgc agcctggtgg cgccccgcgc ttcaaagcgc      3600
     gcctggtagt caaaggcttt gcccagcgcg agggcataga ctacagcgag gtgttcgcgc      3660
     ccaccagccg ctacgtctcg ctgcgggcca ttctggccat cgccgccgcg cgcggcctat      3720
     cgctgcacca gatggacgtc aaaaccgcct tcctcaacgg cgaccttgat gaggagctct      3780
     ggatgcagca gccgcagggg tttgaggtca gcggcgacgg cggcggcggc gacactggtg      3840
     gcggcggtgg tgctgacggc ggcggcagcg gtggctcaag ccaccgcagc gtgccgctgg      3900
     catgccgcct gctaaagtcc gtgtatggac tgaagcaggc accgcgctgc tggtaccgca      3960
     agctcagtga ggagctgggc gggctgggct tcacgccagc cacggcggat ccggcactct      4020
     ttgtgcggca cgacgaggcg ggtccggtct atgtgctggt gcacgtggac gacctgctga      4080
     ttgccgctgg ctgctccgcg cagctggcgg cagtcaaggc cgccattggc aagtgcttcg      4140
     aggtgcgtga cctgggagag gccagcacct atctggggat ggagattaag cgggacccca      4200
     gcaccggcga catcctgctg cagcagcggc gctacgtcaa cgagctgctg cagcggcacg      4260
     gcatgactga tgccaagccg cgcagcctgc ctttgccggc tggcacgcgt gtgctggcgg      4320
     ccagcgagca gcagcctgtg ctggatgacg gcggccccta ccgctcgctg atcggcggac      4380
     tgaactacgt cgccgtcagc acccggcccg acattgccta cgcgctgagc gtgctcgcgc      4440
     ggcacatggc ggcgccgacc aaggctcatc tggcgctggc gacgggagtg ctgcgctacc      4500
     tcaagcacac cgtggacatg ggcctgcgct tcagcgcttc cgcctctggc ggcggcggtg      4560
     gcgcaggcag cagcagcgcc ggcggcggag cggcggcggg ctatgacgct ggctcctttg      4620
     tcggctactg tgatgccgac tgggccggcg accccaatac ccgccgctcg cagaccgcct      4680
     tcctctttgc cctgggcaag acggtggtca gctggtgcag tcagcagcag cgcacggtcg      4740
     ctgcctcttc tgtggagtcg gagtaccagg ccgcggccgc agcgaccaag gaggcgctgt      4800
     ggctgcgcaa gctggcgtcg gacctgggcc tgcgcagcgg tgctgtagcc attcgctgcg      4860
     acagccaggg cgccctcagc ctggctcgca accccattgc ttcatcgccg ctgtcgaagc      4920
     acatcgacat ccagcaccac ctggtgcgtg agcgcgtggc gcgcggcgag gtggctgtgg      4980
     agtactgccc cacggagcag atgattgcgg atgcgctgac caaggcgctg ccggaggcca      5040
     agttcttctt ctgccgcgcg gcgatgggcg tcagcacttg agcagggttc tgtcaaggac      5100
     agatgccgct gcggcggtat gttagcaggg aggttagtta ggaatgggac cgtgctgggt      5160
     tctgccacgt gcagtaaggc tgaggcctag tgcagtgact tgcggtgact tcagacggtg      5220
     ctcagtttga gggggagtta tctcctcctt tatggccggt gattggcctt gtttgtttcc      5280
     cctgtcagtt ggctgtcagt tggcggtttg ctattggacc cagttcggtc cgagggggag      5340
//
ID   L1-1_CR     repbase; DNA   ; CHL   ; 7343 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   L1-1_CR is a L1-like non-LTR retrotransposon - a consensus.
XX
KW   L1 superfamily; L1-1_CR; endonuclease; non-LTR retrotransposon;
KW   reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-7343
RA   Kapitonov V.V., Jurka J.;
RT   "L1-1_CR, a family of L1-like non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 39-39 (2004).
XX
CC   [1] Consensus
XX
CC   Several hundred copies of L1-1_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence and
CC   constitute
CC   nearly 1% of the genome (some elements are less than 1% divergent from
CC   each other). L1-1_CR elements usually are flanked by 2-14-bp target
CC   site duplications. Many elements are inserted as a 15-50 bp long 3'
CC   terminal portion of the consensus, including the polyA tail.
CC   L1-1_CR1 encodes the 350-aa L1-1_CR1p (pos. 1057-2106) and 1534-aa
CC   L1-1_CR2p (pos. 2109-6710) proteins.
CC   L1-1_CR1p is not similar to known proteins; L1-1_CR1p is composed of
CC   the L1-like endonuclease and reverse transcriptase domains.
XX
SQ   Sequence 7343 BP; 1005 A; 2416 C; 2727 G; 1005 A; 0 others;
     acagcggggc cccgcccccg gtgccagttc tggtggcggg gggaagcaac cgtgctgctg        60
     cggctgccct gcgggccgcg ctgcagcagc agccctcttc acagcagcgg gtggcagcgg       120
     gagggcttag cggggtccag ccggcggcag gcgtgggggg gccgctggcg gccgggcctc       180
     gccctgccgg tgctgggccg gctggcgtgc agcagcagca cagtggcgct cccgcgccac       240
     tgccaccctt ggatcagcgg gcagccgccg ggcaggatca ggagcagacc gctgtgatgc       300
     ggcggtactt ggccgagctg gcggagctca atcttcagcg gcaacagcgg ttacagcagc       360
     agcagcagca ggagctgcag cgccaggggc agtcgcccag gccccggacc ggctcccagg       420
     ttgtggtcct ggccacgctg gggggacagg acggggcggg cggtggcgct ggcacggcgg       480
     cgtcacggcg tgggcaacgt gttgacatag ttgaccacgt gggggacgtg cagatgcagg       540
     aggcggcggg tgtgggtgac gcagcggctg ccgcgggtgg cgccagcgga ccacccgctg       600
     tggcctcgcc ctcgctgcca gctctggtgg cggggggaag cacccgggct gctgcggctc       660
     ccctgagggc cgagcggcag cagcagccct cttcacagca gcgggtggca gcgggagggc       720
     ttagcggggg gcagccgtcg gcaggcgtgg gggggccgcc ggcggccagg cgtcgcactg       780
     ccgatgctgg gccggctggc gcgcagcagc agcccagtgg ggctcccgcg ccacagccgc       840
     cctttgatca gcgggcagcc gccaggcagg atcagcagct gaaagctgcg atgcagcggt       900
     acttggccca caaggcggac ctccatctcc agcagcaacg gcgggtacag caacagcagc       960
     agcaggagca gcagtgccag gtgcagccgc ccaggccccg gaccggctcc cggtttgagg      1020
     tcctggccac gctgggggga caggacgggg cgggcgatgg cgctgccacg gcggcgcccg      1080
     ggcgtgggcg acgggtgcaa ccagccgcgc acgcaccgcc gccgccgccg cagcaacagc      1140
     cccgctccaa agggcgcggt ggccccgccc agctcccgca gcagagggca gggcgcttgg      1200
     gcggcgggct gcctcccccg caggacggtg ctagctcgcc gccgcacgtg cccactgggc      1260
     ggccggccgg gggacagcag gctggtgggg gcagcgggtc ggggcgccag ggtggaggag      1320
     cggggcgggc agtgccccag ccgccgcccc aggcggggcc gccactgcag acgtcacaac      1380
     cggcgggtgg tggtaagggc aggggcaggg gtttcggccg acacggctgg gcgcgctggt      1440
     gggggtgcgg gcagtgaggc ggagtacggg gccgtttgcc tgacccggga cacgtgtgtt      1500
     gccatcggct ctgacctcgt gacgcaccag aaccgctgcg cagatgtgca ggggtatgag      1560
     tgggcgcagc tgggccgcga cacgcttggt ggccgcctcc tcgcctacct ccgtgaccag      1620
     ggcgccaccg taccggactg ggccgtctgc cgcgtgccgg ccggccgtac cgccgtcctg      1680
     gcacagctgc acgacgagtt cactggctgg tggcgcctat actcagccca gcctgcagac      1740
     acgcccctgc cttccgacgt gacggagcag ctggatgacg ccgcgcagca ggtgcagacg      1800
     gcctacatgg actacgtgct cctagacgcc cgcaccctgc ggtccgctaa gcgtgggccg      1860
     gcggaccccg gcggggccag cgggcccagc cgccggcaac gccagcaccg cagccgcagt      1920
     acctccagcc tcatgagcct gggcagcgct ccattgcgcc ccggcggcgc cagctcaggc      1980
     gccgctagca tgagcaccag cagcggcggc gcgcccccca gccagggtgg cggccgccgc      2040
     ggcaaacgcc acagcagcaa cagcaaccgc aaccgccacg gcgctgccgt ggccggcggg      2100
     ggctcataat gcggccacca gtgggcgcgg cgaaccttcg gctgctgaca gtgaatgtca      2160
     acggcctggg ctcgccgttc aaggcgcggg cgctggtctc gcacctgcag caagttgggg      2220
     cggatgtggc gatggtgcag gagacccacg ctactgacac gacggcgctg gagtcttgcc      2280
     ttcgtgccgc gcagggggcg tgccttccgt ggcgccactg cctcgctgcc agcccggcag      2340
     cgtcgcccca ctcctgtggg gcggctatcc tggcgcggag tcggctgtcc cttccaggct      2400
     gcgtactgca gccgccgtca acggatgcgg cgggccgtgt ggtatgttgg gattgggacg      2460
     tgggtcacct gcgcctgcgc ttcgtgtgtg tgtatgcgcc cacggccgtg gcggacaagc      2520
     ctgctttctt tgccgggctg catccccacc tggccacgga cagggtgctt gttgtcggtg      2580
     gggactggaa ctgtgtcacc gatgccagtc aggaggcggc ccctagcccg tcacgtgctg      2640
     caggtgcccc gcaacttgcc agcctcctcg cccagttcag tctggtggac ccttgggcga      2700
     gcaagcgtgg cggcgccaag ggctacacgc atccggccac gcccaagccg gccactcccg      2760
     cacgcctgga tcggtggtat gtcagtgcca ccgcggcgcc gtgggtggtg gatgtcgctc      2820
     gcacgtatgg ggcgcctggg gaccacaacg gtgtgctgct caccctgtcc ttgcccgacc      2880
     tgccacatgc gcaccgggag cagtggcgct tccccacata cctgctgttt cacccctcgc      2940
     tgcgtttgga gctcgagcag cgcttggagg cgcacgttgc cgcaaatccc gtggccagta      3000
     caggtgacgg cgcttgcacg caatgggagg cggacaagtt cttcttgcgg gaggccgcca      3060
     ccagcatcca ccgtcggcat gcacgccaga cccgggatgg gctgcatggc gtggtgctgg      3120
     ccgcagacgc ggccgctgcc ctggccgacc ggccgggtgc cagcgccgcg cagcgtcagg      3180
     ctgcggccat ggccaacttg gcggtgcggg aggagcgggc agctgccgca gcggccagcc      3240
     acaatgcccg cgctgcactg atggaggagc atggggagcg gggcactcgc tggttccatc      3300
     ggcaggctga cgagccagca gccggcgcgc aggagcccat cacgcacttg aaggtgccgg      3360
     ggcaaccggc gcctgtggcg ctcacggggc cgggcacgcg caacactgtc tccgcagccg      3420
     ccgcagccat gtacagcagc accagcccca ccggcctgtt ccgcgtgcag ccggtctgta      3480
     cggcgtcgca gcaacagctt ctggcggcca ttgaccgcaa ggttccggcg gatctgcagg      3540
     ccgccgcaga ggggtccggt gacggcgccc tcagtgatgc cgagctgatg gcagcgctgg      3600
     ctggctccgc caatggtaaa gcacctgggt cggacggggt cccgtacgag gtgtacaagg      3660
     ttttctgggc gctgctgggt ccgcgcttgt gtgctgctgc tgccgctgcc tttgctgccg      3720
     ctgcagacgc ccacgatggc ggcgaaatgg cggcggcgct gcccgcctcc tggcgggagg      3780
     gcatcatcac gctcatctac aagggcaaaa gcctggaccg cgccgagctg gcgtcctacc      3840
     ggcccatcac gctgctcaac tgcgacttca agatggtgtc caaggccgtc agcgcccgcc      3900
     tgcagcccgc cctggatgca gttgtggatg agctgcagac cgcgttcatc accggccgct      3960
     ggattggaga caacgcgctg tacctccaag gcctgatcga atggatgcgc ctggacgtgg      4020
     gcgcggacgg cacgccacgg cagggtggtg cgctgtactt cttggacatt gaaaaggcgt      4080
     atgaccgggt gcaccggcag tggctgtatg cgtccgcgga gggacttggg tttgggccgc      4140
     gcatgctgcg ctggatccgc ctgctcactg ccaacggctc tgcccgcgtg tgtgtgaacg      4200
     ggatgctctc tgacgccttc ccagtgctga acggcttgcc gcagggcagc accgcctcac      4260
     cacccctgtg ggtcatccag atgcagccac tgacgtcctt tctgcggcgg caggtggagc      4320
     aaggggcact gcgcacgccc ctgttaccca gcggcgagca ggcgccacct gctgcccacc      4380
     acgctgacga cacgaccctc acggcgcgcg acccggcggt ggacgggccg gtcctgatgg      4440
     cggcagtaca gctgttctgc cgcgcgtcca acgcccgtgt ccatccggac aagagcaagg      4500
     ccatgggcct tggcaggttt gcgcacctga cgggcccttg cccacacacg ggggtgccgt      4560
     ttaccactgg cgccgtgacg cacctgggtg tgcccctgtc gtgggactct gatgcggctg      4620
     cagctgactt gtacacccgg cgggctcgcg gcatggcgtt tgtggcgcgt ctgtgggctg      4680
     ccctgtctct gactctcgtt ggccgtgtgc acattgcgaa gcaggtgctg gcggcgaagc      4740
     tggcctacca cttcagcttc ctcaacccgt cgcctgcgca gctgaaggaa ctcaccgacc      4800
     tggtggacca ctttgctgcg cgctccatgc acgctgagga cgccagcctg gtgtcgcacg      4860
     ggaacccgct cctgctgcca aagcgggaaa cggcctgtct gccgtacaag gatgggggtg      4920
     tcaaccacgt cgacctgcct gcgttcctgt ctgccctgca agctaagact ttcgccctcc      4980
     ttgcccagcc aggccggcaa ccctggaaga tgctcacccg ggcgctgctt acccatgtgc      5040
     gcccggactc cgccaccacg tgggcgtggg tgtacagcga cgcgccggcg ccagcggggc      5100
     tgcctgcccg gctggcggcc gcggtcggcc acgtgcggag cgcgggcgtg gaacagcatc      5160
     cgccgcagcc agccactcag ccgccagcgg cgccgccaca gtggcgggtt agcctggacc      5220
     agctgtgggt ggctaacgct gcgggggctg tgtcctacgt ccactacacg gggcggctct      5280
     tggagcctgg gcctggcgtg ctgcccccgg cggtggatgg ggcgtggcag cctgcctgtg      5340
     tgctgcagca tcgcaagccg cggcacctgt ggacctttga agagcgggcg gcgtacgatg      5400
     cagcatcacc aggggaacgg gcgggggcgt ggcctcgggc gccgtacttc ctggcgccgg      5460
     aggctggggt ggtggtgcac ccggagcact gccggattgc gggtgtcagc ttggcggact      5520
     acacggtgcg ggacgtgcgg cgggccatca ccgcggccaa cccggccgca cctccggctc      5580
     cggcccgccc cgcagccatg ccgtgcccgg cgccagcaca gcaggcgggg ggttcgggga      5640
     cccagccggc ggcacagtcg cggctggcgg agcgggaggc ggagtggcag cgtgcagcgg      5700
     cgcagctgac caccacggcg gcgcagcatt tccacaataa cccggtggct ctggacccct      5760
     ggctccaccg cacctctgcg gcagccgggc tgcagaacac gccggcgaga gaactgcagt      5820
     cgtatgcgtc cccgtcccag cagtcgggtg aggggccgcg gcggtccgcg cggctgcagg      5880
     agcaggcggc gggcggggcg gggcctagca cggggcctgc cacggcggcg gcggcagcag      5940
     cggcggcggt ggagggcgac cctcgcatgc cgcccccgga tgcgtccctt ctgcggggta      6000
     cgtggcggag gctgtgggac agccacgcca gtcggggggc aaaggtgctg gtgtaccggc      6060
     tgcaacatgc ttacctgcct tgcgggctgt acagggcggg caagggcatt cggccacggg      6120
     tgaccacggg gtgcgggggg ttgggggcgc actgtcctca ccccgcctgc gggccacctg      6180
     gcccgcgggc gtgggccagc ctgacgcaca tcttcctgga gtgtccagct tatgcgcagg      6240
     cgaggacgtg gctgcagcag ctgtgggcct gcgttgcgcc ccaggcagcg gcgccgccag      6300
     tgacggacgc gggcttcatg ctgggggacc gcatgggtat gtgggcctca ggcccgcggg      6360
     gggcgggcgc gctgctgtgg agcactttgc gggccacctt cttgtacgcc gtctggtgtg      6420
     cgtactggtc ccgcgagcct gctaagcaga cgtcggagca tgtggttcgg gaggtggtca      6480
     gcgagctgcg cagggtgatg cagctgcgtt tcactgccgc cacgctaacc cctgaaaccc      6540
     tgtcggctct gcccactcag cttctcaccg cacagctcaa ggcggctaag ctggagcact      6600
     ttgttgccat ctggtcggcg ggtggcgcgc tttgtgaagt ggaggaggtt cagggtgggt      6660
     caccgaagtt gaacttgcgg ctgacgcttg catcacctgt gcaggccccc taggtttcct      6720
     tttgggcggc gtttctttcc aggcgctggc gtggcgtatt atcgtcatca gcttatctgg      6780
     cgcccatgtg ttttagctct ggctggcgtc gcagcgcctg ggcggctgtg ggacttcctg      6840
     cacagcgcgt cttgcagcgg gctggagccc gcttagtcag cgccacatct ggcccgttta      6900
     gttttctgct tgtgtctcct ctgccggttc tcctggggtg ttgcttaagc aaccgacttg      6960
     tgggggtggg gtgggtttgg gcggggcgag tgcgtagcgc tggtgttttc ttttctggcg      7020
     cgcggtggtg gtggttcttg cggttaggct gtggtgtagg ttggtgcttg ggttaggtct      7080
     ggcggtgttt ttgtgcaacc cctcccgggg ggcggggggg ccagcctcct gctctgtctg      7140
     ccgggtcggg gtggggtggg gtgggatgga tgggggtggt tggtggcggt tttcgaggtg      7200
     tttgctttct gttttcttct cttttcttct cttcttgccc tgtcagggtt ctggtctcgg      7260
     ggaccaggct gctttcaggc agcagggggg cagcgcgtct gcccctgttc aaccttgtaa      7320
     ggatgattcc tcaaaaaaaa aaa                                              7343
//
ID   L1-6_CR     repbase; DNA   ; CHL   ; 2226 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   L1-6_CR is a 3' terminal portion of a L1-like non-LTR retrotransposon
DE   - a consensus.
XX
KW   Interspersed repeat; L1; L1-6_CR; non-LTR retrotransposon;
KW   putative L1 superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-2226
RA   Kapitonov V.V., Jurka J.;
RT   "L1-6_CR, a family of L1-like non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 5(3), 51-51 (2005).
XX
CC   [1] Consensus
XX
CC   The L1-6_CR elements are flanked by 5-10-bp target site duplications.
CC   There are several hundred copies of L1-6_CR present in the genome.
CC   They are massively truncated at 5'. Many elements are just 20-60 bp
CC   long 3' terminal portions. The consensus is not complete at its
CC   5' end. Some copies are less than 0.5% divergent from the consensus
CC   sequence.
XX
SQ   Sequence 2226 BP; 244 A; 600 C; 846 G; 244 A; 0 others;
     acggccaccc cgcctgtggc ttttgacggg gtggtggggg tgcttggcct gattgtgcgt        60
     atgcctgttt ctatgtttgg gcgagcggcg gcggcctcgg cgtatgccct gagcaaggtc       120
     ctgtaccatc tggagtttgc ggggttcccg tcgccgtggg cgccggttgg caagttgtta       180
     ggccaggtgg cggcggttgt tgatcggcgg ctgtcgccgg ctaagtatgc ggttgcaccc       240
     catgctcgtc cggtgggggt gtcccttgac atcatgcagg tgccgccggc tctgggtggt       300
     gtaggactgc tgcctcttca gctgcacgtg caggcgcggc aagctggact ggcggtgcgg       360
     tgtgtgctgg gcgcgtgtgg tttgctggcg tttgtgccgc cgtggacgaa ggtggcggag       420
     gcttggctgc gggcacgcca tccagcggcc acgccactgc gcctgttggt gcggtgcgac       480
     ccgtcacgtg ttttggacaa gttggttacg cctgagtgca aaccgttttt gcgtctgttg       540
     ggggcggtcg cccacttgcc gcctatcacg ttggtggcgc cgcccgcggc tggggactgg       600
     gtgtatcatg tgccgttgtg ggcgaatccg gcattgtgtg atggtgcaca gacttttgac       660
     gtggcgtttg ccgatttatt tgccctgccg ggccttgtgt atgtgggaca gttggtggcg       720
     gcgcatgacc agttagaggc cgtgcgtgct gcccacaccc gcccgggtgg gtggggcacc       780
     aggtttggtg aggcgatgtt ggacttgtac ttgacgagcg tgtggcggcc tgtgcttgga       840
     tggggacctc ggcggcacct gccgtcgccg ctcctggggc cggcgtcgcc cctggcggcg       900
     gcggaacgca tagccgcggc ggtggccttg ctcccaggtg gctgggaggc cgcggcgcgt       960
     gcggctcgac tggctcgcgg gcgggcgtgg gtcatgccgc ttcctgcgga tgccgtgcga      1020
     caggcggcgg cgggggcctt gacccaggtg gtgcggggac tgggctgggt cctggacggg      1080
     ggcccgcctc tgctgctgtt gaactactcc gtgaaggcag gaacggccat gcaactgggc      1140
     ccccaggttg cggcgctgcg gtctaaacat ttgttgtatg tgcgtgatgc tggtgtttct      1200
     gcggacggcg cgcttgcggc tgccggcgcc tttgccggca ctctggcccg tttgtgggcg      1260
     ttaaaatggg aaaattatca caaggaagcg ttgtggcggg tggcggccaa tgcgtgctgg      1320
     tcgttcccca aaaatgccgc ccagcgtgca gctggggtgg caatgcccct gtgccgggcg      1380
     tgtgggcggg atatgtgtga tggggaccgc cggcactact tttgggactg tgttgttgct      1440
     cgggcgctgc gggagaacat ggctatggca atgctggggt cccctcctga cacggctgat      1500
     gactgtttct cccgtgctga cctttggctg gtgcagccgc ctgctgggct ggcgccgccg      1560
     gtgtgggatg tagtgtgttt ggctgcgctg tctgcccttg actcgggccg gcagcaggtg      1620
     attatgactg gcttgcgtgt gcgtcgggct ctgacgtcgg cggaagtcat gcgcatcagt      1680
     gtgtccgtta ttgctgattt ctggggccgg ctgcaatcgt atgtcagtct cggcctccgc      1740
     ccgaaagcct gggccacggt gcctgcgcac catccgttcc tctcgcgggg tgcgggtgac      1800
     tgtgtgctgc tagtgttgcc tgatgatgtg ggctccccgc ccccctcgcc ttaatttgct      1860
     cgtgggtggt gggagcggtg tgcctctggt gtgtgcgctg tgggtgtggg gcgtcgacgt      1920
     gggcgtcgcc ggactacgtg cccggtgtac ctgcgttgac gcctcgccgg tttgattgcg      1980
     cctcgtgcgc tagtgcggtt tgctgtacgt tggtggggct ttggcgggct tgggcttagc      2040
     ttcgactcgc tgtgcagctg ccgagacacg ctttacgcga agacctgttg cacggttgtg      2100
     gaaggtcggt agccaactgg ggggagggtg gtttcctttc gggccggaga tggtccctct      2160
     tgacctgggt gcacgggcac ccttgcttgg tcggattgtc ccttctttgt aatatcgcaa      2220
     ccataa                                                                 2226
//
ID   TE1-1_CR    repbase; DNA   ; CHL   ; 683 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   TE1-1_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   Non-autonomous; TE1-1_CR; Transposable element.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-683
RA   Kapitonov V.V., Jurka J.;
RT   "TE1-1_CR, a family of unusual nonautonomous transposable elements in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 5(3), 66-66 (2005).
XX
CC   [1] Consensus
XX
CC   TE1-1_CR is a family of nonautonomous transposable elements. The
CC   consensus sequence is less than 5% divergent from
CC   TE1-1_CR copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily (TE1_CR). Features
CC   of this superfamily include subterminal inverted repeats (pos. 33-45
CC   and 679-667). The genome harbors several families of TE1_CR-like
CC   elements (e.g. TE1-2_CR). They all are characterized by conserved
CC   termini.
XX
SQ   Sequence 683 BP; 149 A; 209 C; 193 G; 149 A; 1 others;
     acaaggggtg tcagctttgt acagctggaa aatgggctga gccccatgaa gcgcaaggga        60
     tgtgacgatg ggcaccggcg acatgaacag cacccttgca agcccatcca gcgggactgg       120
     ccacggggta tgccaacgcc gtgccgaggc accgacatgc cctgtccacg ccacgccacg       180
     ccaccttacc cacgccactt cacggtccat gatatcccaa atgcacctca ytccacatcc       240
     cactcaagca ccgcaaacgg ctagccgggc tcgggcgcgg gatcccgggc cgcgacacat       300
     ttaaggctcg ggatcggcac gcatggttcg gctgttgcac aaaatttcga cattcttgcc       360
     ccaagacgct tgtcgtcgac atgttttgat acatggatgt aagatattca gggcccgaga       420
     gctatactcg cggactgaag aaagtcaaga tgtccatgga ctcgcgaggt cgcttctcgc       480
     tccggccgag ttttccctgc cgcctatttt tctacaatag ggaatagcaa ttaataatac       540
     gtggcgctcg cggtttgtgc cagtttggca ctttttgtcg acgcaggcag gcacgcaggc       600
     aggcaggcag gcacggacag gggcaatcct ggggggcttc gcccccccct ggatcgcttc       660
     gctcgggggg ctcagcccaa aaa                                               683
//
ID   DNA-1-9_CR  repbase; DNA   ; CHL   ; 630 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   DNA-1-9_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   9-bp TSD; DNA transposon; DNA-1-9_CR; unclassified superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-630
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-1-9_CR, a family of nonautonomous DNA transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 31-31 (2004).
XX
CC   [1] Consensus
XX
CC   Some 20 copies of DNA-1-9_CR are present in the C. reinhardtii
CC   genome. They are ~99% identical to the consensus sequence.
CC   DNA-1-9_CR is characterized by 37-bp TIRs and 9-bp TSDs.
CC   The genome harbors several young families of DNA-1-9_CR-like elements
CC   (less than 100 copies).
XX
SQ   Sequence 630 BP; 140 A; 177 C; 175 G; 140 A; 0 others;
     cacacgggta tgacgccggt ctgaagaggg gcaaaaacgt gtccacacgt gtttctccac        60
     gctcgcgtag acttagcctc cctctttcag gaattaactt atatgacata taaggatgca       120
     aaagtttgac tcccgtcgca ttctgcgagg gtggctgtca ccacatttcg cgaggcatgc       180
     tttcgccagg gtcgcactct taagcccggg agcatgtttc tagtctcctt gcatgtatgt       240
     ttgatgacgg caacaataat tggcatcaaa gcgcggtaat tgcgcagact tgagaagcct       300
     gttcaccgcg acgtcaccga ataggccgca aacaaaatat ttgaggtctc tatagtatca       360
     aggtgatact tgtagaacgc tggtagctga ttcggaggtc ggcctgacga ccgtcgccga       420
     ccgtgccaag ctgggcggaa cgcatccccc ggacgccacg cgagctagac cagtctaggc       480
     cgtgtcgtcc gcccgggacc acgttcgccg tgccttaaat gggtagtgcc cgacctatag       540
     ccggagtttg gggaccggac gacaaggcca aggcaggtaa ccaggctgtg ccgtttgacc       600
     cctctcccag accggcgtca tacccgtgtg                                        630
//
ID   RandI-6     repbase; DNA   ; CHL   ; 13822 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-6 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   AP endonuclease; RNase H1; RandI superfamily; RandI-6;
KW   non-LTR retrotransposon; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-13822
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-6, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 201-201 (2004).
XX
CC   [1] Consensus
XX
CC   RandI-6 is a family of RandI non-LTR
CC   retrotransposons. Approximately 50 copies of RandI-6 are
CC   present in the genome. They are ~1% divergent from the
CC   consensus sequence and are likely mobile. The RanI-6 elements
CC   are usually flanked by 10-15-bp target site duplications. The
CC   consensus sequence encodes a 4527-aa RandI-6p protein
CC   (nucleotide pos. 44-13624) composed of the AP endonuclease (aa
CC   pos. 2010-2290), reverse transcriptase (aa pos. 2660-2960), and
CC   RNase H1 (aa pos. 4025-4190) domains. A 144-aa portion of
CC   RandI-6p (aa pos. 1463-1616) matches the Josephin domain (E <
CC   0.001; pfam02099) and is conserved in other RandI polyproteins.
XX
SQ   Sequence 13822 BP; 3345 A; 5165 C; 3208 G; 3345 A; 0 others;
     agaatgttgc caatactctt gccaatcgat gctggctagt tagccagctc gcactcacag        60
     actggcgccg actgggccaa gtccggaaga tagcgtggct gagccatgcc ctagccttcc       120
     tagcaatgat caaaagctag gaaaaacagg agcaggctct gaagcggcaa actgcccagg       180
     gaatgcggag acacgaccgg tagcgagact cccctgtaaa ggggcctcac acccctacca       240
     caaaggtcac ggttcaaagc tccttgggat cacagtgttg cgacgcgacc ccgaacccac       300
     gttctcacga tcatcctatc gaccggactt ccaccagccg cccagggctc gccagcaccc       360
     tctgagtgat ggcaagacta aacaacaaca ctcacaccaa caacgacaca ctaagaaggc       420
     acagacgagt cagaccacga catcgcaaac cccgcgcaac gccagagcac cgcgacttac       480
     caccaacaac acacaacaac actctgtaac accacagcac cagcacacgc gaaccagacc       540
     cttggagcca acccaagaca acccgacccc caaaaacccc acccctgaca acgatgccct       600
     taccccaaga aaattgaatt cccagagaca aaacaatccg actaacccac aaaacactga       660
     aatcaagaga aaaccactgc cctcacacct ttcttctttc tgcttcctca cgctcacact       720
     cgccctcccc atgctattac ttactccatt tgcctccata gaactcacaa gcgctcccca       780
     aatgcacaca tcaccggtga ccctggagcc tgcaagcgcg atgaggcccc atgccgccgc       840
     cggccttact caaacagcgg cgccctcgca tcatgcttct ttatctctag caacaaaaat       900
     gaaacccttt cacgttgact ttaccgggga catcatcctg cgcccggacc tgcactacct       960
     ctacaatgca gccgggctca ctgtaggaat cctgcatccg ctccctgagg gcaatatcgc      1020
     gctatggcaa actcagaggc tgcgtcccgc cgcgggacca atcccggcat ccgtgctcgg      1080
     ccttgcagac ggcaagcagc gcatcctgct catgaccgct tgcgccggct gcctcaaccg      1140
     cgccatgagc ctgtccagcc tgctggagcc cgccggcaac taccttcgcg ttatccagca      1200
     aaacctgctg cacaccaaaa tcgacccgcg cctgcgtcag ctggccgagg ccgccatcac      1260
     caagttcaac gaggtcctct catctcgcgg cgaccttgtc aacagcatcg ccgacgccgc      1320
     catcaaggcg atcggcatgc cggccaccaa tgaggccatc aacaacatac gctcgttgat      1380
     ctacgaggcg cgcgctggca gccagacctg gacgctgagc gacaaccaga aggtggccgc      1440
     ccttggaagt aagcgcacag ccttcaccgc tggcgagctt ttactccact ctgcttgcat      1500
     cacccgacac cctatactca ttctgctcct aacccgtcgc cactgcctcg cagtggccat      1560
     tacgctgccg gtcgcccacg ccgcggcgtt cctgcttgat ctgcaaaccc acgagcggtg      1620
     gattctggag ctgggcccgg acaacagcat cacgccggcc aagcgccggc cgactgtggc      1680
     catcctggcc ggcgcgagcc gctcggcgcc caactccgag ggcaaagtct ccttcctcgc      1740
     ggcctctgag ggacgccacg acctagagaa ggtaattacc tgcagctata ccacagatca      1800
     agcgcactcc cctgtctata gccccctctt tcgacatgca cccaattatc gcctcaagtg      1860
     ctcacaactg ctgcctgcct atacgtcaac aacacctccc tatcctcagg tactcccctt      1920
     cactgccatt atggtagtgc agtgcgcagc tcgcgcccag gacgccgcgg gcgaccccaa      1980
     caaggtggtc gcgcacatgg cttacgaggc catggacaaa atctgcgccg gtaagcccac      2040
     cacgccactg agtactattg tcgagggaac aaaacaccac agcaaggctc cggggaatta      2100
     caccagcacc cagacctatg gctcctcccc accgatcgca catgccctct cgcccaacac      2160
     cccacttcaa gcgcccccta caccgccccc cgtcatgccc cgatccacag aggccatgac      2220
     ggcgaaggac cccggtgaga ctgccaccgc gaacatccgc gactggtggg gctcaccgct      2280
     gggcgcctgc gtggacgtgc gcttcgtcaa gctgcacgac gccgacctgc tcgcctccct      2340
     cggcgccaac cgcaaccagc tgtacggcga cgtcttctac gcccacttca gcagcgccga      2400
     cgtctgcgag gctatccagc gcacgggcgg cctctacctg ttctccgaca ccgcctacct      2460
     gcgcgcggtc tgcctccagt cccgcccgga cggcggcgcg gccacccccg agatgatgga      2520
     cctgctggag gagatcggca tccagatcga actgttggac cccctcctca gcgacacggg      2580
     agttaacgag ctgggtgcgc gcgtagcgca gcaactggag cagggcatga aggcgctctt      2640
     ccccgacatc gcgcagcacg accacctcac caaccgcatc ggcctctaca ccaccttcgg      2700
     caccgtgcag agcctgacca ccctcgaccg cgacaaccct gtcgagttcc tgttcgcccg      2760
     caagggcggc aagctggcgc cgatcatcga cctgcagccc gccgcctggc aggccaacga      2820
     ccgccagctg ttccacctgt ccgacagcag gctttacctg ctgccctgca acgctctcag      2880
     cgcggcagcc atcctgatct gcatcaacgg cggccgcaac ctcgcctcca ccatgctgtg      2940
     gccggagctc aaccgcggcc gcgtctactt gacggacgcg gctctggact accagtacaa      3000
     gctgaacacg ggctcggccg acgagctgtg ggagcacccc tgcgcacacc tcggcctggc      3060
     tgccggcctg gcgctcacag gccaggccgg cgcgggcatg gttccggact tcgtgggcgc      3120
     gaagcccatc cacgccgccc gtgccaagac ggcggtgagg caccagctac aggcggccga      3180
     tgcccctgaa cccctaccca tgcctggcct gcagctcaac ctgggcgagt ccggccccgt      3240
     cctggacgcc aagaccgtgg aagccgctgc ggaagatgag atggaggaga tggacctggc      3300
     cagcctgctg gtaagctccg ccctgggcct caaacccggc tccactgctc cagcctttac      3360
     agcgtcgaca acaacccacc cctcaagcac acacccacac ctaaccgaca aacctactga      3420
     gagcgccacc cctcccaact gccttacccc ccacagttca caatgccgag ccccaagcgc      3480
     cagcgcggag ccgacgccgc ggcataatgc gccgcccgcc acctgcagat taggacggct      3540
     gaggtctttg ccgcacactc ctggatacgc tggcatattg attaatgcat cggggtactc      3600
     ggggacgcat tcaaccgcat attgggacag agtagctcag acgagagtag cacaggttac      3660
     ggaacaaggg aatgacgcgg gtagtagcaa ggaccggaga atgcacgact atgcagtacg      3720
     acaggcgcgt ggggatgtag gccccgactg cgcggtggtg acgatgcacg gaacgatagg      3780
     cactttgact gtgcttacac atgcgggact ggcaagggat accaatggtg tgtgcaggga      3840
     agtacatctc gcccaaatca atgggtggac aaatggcccg ctcgccagca gaatgcttct      3900
     gttttatgtc ttcctgcttt tgcctattgc ctttcggcgg tatgggcagt atgctcgagg      3960
     cgggcctaag gatgacaagt gtgtatcggc ggctgtagat tcgattttga gggcggcaga      4020
     cggacgcttg cgacctgggc tgcttgcaga agatagcaag gcgaattgca cgcgggctat      4080
     gagggtcaga aacccgcccc tccatattgc aagctgctcc caggacaacg cccgccccag      4140
     tgtaatccga cggcaccatg aactctgtct ggcccacgct accgccacca gacgcacgaa      4200
     ctctccagcc ctgaccaaaa cacgctgctg cccaccatcc cccgctcgca tacggctgta      4260
     tttccctcac gcctcccgca gcgccccacg gccgaagcca cctgcactag cagatgcgcg      4320
     acaggccgta caagggcaag cgaagggacg cggaacacaa tgcctcctct ttacagccgg      4380
     cagcaaacca cctgcttcct cctccgctcc acctagctcc cactctggac gtatctactt      4440
     tgaacagcaa gagctctcct tctgctggat acacgccatc aacaacttgt taggggcagc      4500
     tgccgtatcc ccccaccgtg tcctgttgta tctagagcag ctcttacgtc aaacccgagg      4560
     acgcgagaac accaccgaaa tttttgcatt gtcgcaagcc tttacaccgg ccataggcca      4620
     gttctcaata cacgctgtca accactatct catgtacaac tgccacagag caaaccaagc      4680
     actagccctc catgcccacg acgctgtacg ccccggcgac tccccacaca gtgtcacacg      4740
     ccgccacgca caagccacca atggattcct catcttcaca ccaggctact ccagcggcat      4800
     ctacggccat gtacttgcag tcaaacggca cggcgctaat tggatcatcc tcgactcagc      4860
     cgacacccaa ccccgcacca tacaacacac cacgaccctc gacatggccg gcacaatctt      4920
     cacgctgtct acccgcaccc ccgacacgcc acccctctta cccctctgcc tgaacggaat      4980
     tggaccaccc gccaattggg cccccgaccg catggggcaa ccatctttcc gcgcactaaa      5040
     tcagcttgcc aaccacctca ccgctaacgg ccaccaactc ctagacacat gctcctgggg      5100
     caacaactgc gcaatctttg ggaccctagc cgtcctacca ggcagccggg taccactcat      5160
     accctccgac ccagcacaat gggcgcccat gactggcgcc atacgagcat gcatcgcatc      5220
     caggctcgag catctcaccg caccaggcac cccgggcagc gacgagatgc gcacacacat      5280
     cctcggcctt tacgaagagt ccccacaccc agagaacacc atacgcacac actgccgcaa      5340
     tatccgcgac acctccatgc ttaccatccc tgacctgatt gccctccaat ccctcctacc      5400
     aggcgtccaa atccacgtca ttagccccgg ctacaccgac tggctcactc tcccaacacc      5460
     ccaacccaat gacacccgcc atgacgtgta tctagcacac gtaccccact cctgggctct      5520
     cgccggcttc cccaccgcgt ttcccgttac agactgcaac cactacatcg ccgtcacacg      5580
     tcacacctgg acccccggct ctgtcaccca agatccctca cctctgttcc acgaatctat      5640
     ttgggacgga ggcccgtgca cgcgagacat cattgtcaca cacgccaaat cacccacccg      5700
     cagcccacta cccaaaaaag cacgcacaaa caccattaca cacgccctcc tgcgtgccat      5760
     gggctccccc accaacccac gcaaggctgc aaaacgcgcg ctctccctat cccccccggc      5820
     accacgcaaa acaacacggg ccacaaccaa ttgcgaagca aagcgagccc caaacacccg      5880
     cgccccggca aacccacaca cacccactgc aacaccggcc gtaaccaaca tttcccccca      5940
     acaatcacca cccgccgcgc ctcccaaccc cccaccgcgt ctggctgtca aggcacgaca      6000
     agccacactc caagcattcc tcaaggctgc acaggcgcct cgggaagacc ctgcaacgca      6060
     ggtggcaccc acacacaccg atgcatgcca cctcgtcaca cttaacgccc gaggcctgct      6120
     ctcaaatctg acagcgattc gagatgaatt agagacctgg gacgcagaca tcctcatact      6180
     caccgaaacc aaaacgagag cccatcgaac caggacggaa cgagacatca tcaaaaacag      6240
     cctcaaagcg tacacgtcgt tcgtgcacag cacaccccgc cccccaccac tgaagggcca      6300
     aaaacaagac ccgcggcggc accatccctc cggcggcgtc acactagccg tacataccag      6360
     atacgcccgg aaagaacaca ttacatgctt gcccacacca gcacagctgc aaggatacat      6420
     ggttcacttg cgaatcgcaa cacattcatc cctaccgctg catatcatcg ggatatactg      6480
     cccaccagac aacaaatcca cccgcgatgc attatacaca tacatcaccc gtgccaccaa      6540
     gagcgcagcc cgcctaaagg aacccctcct aaccggcggg gactggaacg ccgctgctta      6600
     tgacacggat cggagcaccc gcactggtac ccaaggcgac aaaacgcacc agaccttcct      6660
     gactcgcaca agcctcaaac cagccgcagg cgcccacaca caacccaggc tgtacacata      6720
     cacacagata caacacgaca ccatcaccca cgagagccgc atagacgact tcctggccaa      6780
     tacccacgcc ctgcgccagg acagccccgc tcgagaatgg accacagaat gtgcaggcac      6840
     aactgatcat ctcgctctcc acctgcaaac taccctaccc tacaaacccc cgcgcgacgc      6900
     ctccccacac actgaacggg aaccccgaag acaaccagac gatgccagcc caacacttgc      6960
     aaacattgtc aaacctatca cgcaaagcca aagtcgcgcc atctcgcaac aatgggaggc      7020
     agaaggaacc accgcgcttg taacactaca cgccacactt gccctaccca actgcagcgc      7080
     acaacaaatc atcgactcca ccgtagccgc aatctctcac cacaccaact ccacggcgtc      7140
     gacacgcacc gcccatgaca tcataaccgg cgcacgcgct caactctccg ccatcgacct      7200
     caacgccgcc tctaccgctc tatatggagc gcttgccgtc ggggcaaaac tcatgctgca      7260
     aacgtgcccc cagaaaccac ctcggacctc cagagcgaag ccctcccgaa cagaagcaaa      7320
     gaaactcaag cgcctgatag cagtcgaaaa acaaaaaaag caacagtacc tcgccctcgt      7380
     gcgggcggct caactgcagg aacccgcaat cccgcctcca acggccccca atccctcaca      7440
     acccgagccc cccgcgacgc ccgcgcccgc cactgccgcc cggcaggagt ggcaagacgc      7500
     actcaaaaca cgccgcacca cacagaaaga aaccagcgcc aaggccgcta gcaaatggct      7560
     gactaagatc tccaaactct ttgcaacctc acaaagcaag gcagccaaaa ttatgctcgg      7620
     aaaatcaggg ccccggcaaa acctcacggc tgtgcggcac cccgcaaccc aacacatagc      7680
     cacaaccagt tctgacatca acgacgcgct ccacgcccac ttccaggcag ccgcggaacc      7740
     caccggaggc caacgcaccg gccgctacag acccgaggac aaggacacaa ctttcccgtg      7800
     gaacgaaccc ggagcgcccg acggcggctt cctattggcc cgcacagcac acccagacgc      7860
     tcagtccctg ctgcccaacg tcgccgactc cagcaacttc cagaggtgca tgcaggccct      7920
     ctcccgcaat aaaagccccg gcccggacgg catccctaac gagctactga agtgcatgcc      7980
     agaggcgtta caatccgctg tccataccct catgtgcgtc gcgtggatta aggccgaact      8040
     ccctgccggc tggtccacaa gcgacaccat tctcctgtac aaaaaggcag acccgctctc      8100
     catctctaac tacaggccta ttgcgctgtg caacacactg tacaagctgt ataccagctt      8160
     agtcacccgg gcggcaactg aagcgtgcac agatcttctc atccacagcg aagcacaaga      8220
     gggctttcag aagcacaagg gaacagaacg ccaaatcatg aacttactgc atgtaatcga      8280
     agacgcagcc ttaacaaaac gagacctata tgtcgcatac attgatttct cgaacgcctt      8340
     cggtaccatt gaccacgacc gtttgcttac aataatgcac cacctgggcc taccaaccga      8400
     ctttattgaa gtcgtacgca atctgtactc ctccgcaaac accacaatcc gcacaacaca      8460
     cggccgcacc aaccctgttc acatacggcg cggcactatg cagggcgaca ccctatcgcc      8520
     cctactgttc attatcttcc ttgaaccgct gctgcggtgg ctccactacg ggggacgagg      8580
     ctaccggtac ggctgtctca ccaacagcga aaacgacgaa cataactgct cgtccctagg      8640
     ctacgcggac gacctgactg tagctgccaa ctcccgagac aaccttaggt gccaaactga      8700
     caagatcgcc cggtacgctg cctggggcgg catgcgcatc aaccgcgaca agagcgcgtg      8760
     cactggcata ctacaccact atgcaagcgc caacagtacg gacaagagca ttaagggccc      8820
     cgcctgtgac cgcactctca aacgcctcct cgcgggccac atccatgtcg gcacatgcac      8880
     caaagacggc aagcgatccg ccatcaccct cccttacatc cccccacaca agccctaccg      8940
     atacctcggt gttgaaatca ctatgacaca ccctcaactg aaagcggtca aagccgacct      9000
     aaccgacgcc ggcgtggagc tgagcaggta ccgaaaactc ccacgccaat gctacatgct      9060
     catcaaacag tgcctgaaag ccaaagtggc ctactcctta ccaaccatgg cctacacgca      9120
     gccagacatt cgggccttgg acgcccaaat cgcaggcatc gctcgaagat gcgtcggtct      9180
     accacgcgat tgcgccaccc gcgccatcct actacccgcc gagctaggcg gcctcgggat      9240
     cggctcactc cgggaagaat acgtgcagag agcctcgagg ctacttgtaa tctcgctcaa      9300
     cgacaccggc cggcttggtg tcgtgacacg ccgcctgctc cacctacagg ccgcgcacgc      9360
     aggaagtgac ctcccactgc acgacatgaa aagggcgggt caattttttg tcacccttaa      9420
     acaactcaca cttctacagg accacgacct acttgccatg ctgcaaggca aagaattcac      9480
     tgccgcccta ccagcccttg tctctaaact acgggccgct gaagccacca cgcccgccta      9540
     ccttcgcgcc gactggatca gccccttgac catcgacctt ggactgaacc tggcggacct      9600
     ggtggacgca aacacagggc ggcacattat tgacaccacg cagcttgacc ggcggttccc      9660
     aaaaggcagg gtgaaagaca agcacaagag ggccttaaac cgatttaccg tcgccctatg      9720
     taaaccggca gaagcacccc ccaaatctat gggccacaaa cccctcccca tgcaaagccg      9780
     caccctgccc gccggcgtct ccaaggccga cctcaattca gctggagacc tacctaaacc      9840
     cataccccaa cgaactctca cctccctcct ggcccgctgg caagaggcac taccgagccc      9900
     cgcggctcca ccaaagcctt ccctagaagt cctgcaggca aaaccgaagc aaacggcaaa      9960
     gcaacgtcat tctcacttca tcaaacacga cacacgcaca agaaaccccg aggtcgaagc     10020
     caatgacgac gccctacccg gctctacggt tcatgacccc tccgacccca caaaggacct     10080
     agctttctac atgagtgccg cgagggagtt cgccccactc gctcaacaat gcaaaaccct     10140
     agggaccacg cgatggacgg ggacctggag gtccccaatc aggcaaatgc cagcccgcgc     10200
     actaatcacc ggcccacaca cccacacagt ccacgcgcta ctacataccc ggccatacca     10260
     gcaacctgct gctcccacgt accagcggct gtacctaccc gatggctgcc cagccacaac     10320
     cccaccgccc gcgcccgcac actcgcataa ccggcgtaaa cgcggctccc agcccacccg     10380
     ctgcccatac actcaccatg ctattcagcc gcgggcccct acacgggcag ccgcacccag     10440
     gagagacagc gcagccgcgc agccaagctc ccgccctgcg tggcgcaaag tcagagacaa     10500
     tgcgctgaat ggccgcctac cccagtccat cgctggggta caggcagcac agcacatcac     10560
     cgcccatcta actaaccgcg acgacattat cgcagccgtc gtcagcggac ccatgaccca     10620
     caaaactaac gccccgccgc ccaagcgaaa acgaaagcag ggcccaccgc ccgaggagcc     10680
     cccctgggca gaacgctgtc gctatagggt tcggtggcaa cccaccctga ccacaaacgg     10740
     catcctccga gcctacgagc tacagaacta caacgccact agcacaacca aacccccgtg     10800
     ccgactatgg gggcaaggca tccggcgctt catggtccaa gtgcactggg ctgaaacgga     10860
     agaccccctc tcctcactct ccgaaaaccc cgggtgggcg gccgccctgg cccgctacac     10920
     tcttgcccaa gccgtagacg cgccccctga ccctaccccg cctcccgccc ttgacaatca     10980
     cctcaccagt aagcagcgcc aggggagatg gcgagaccca gcacccagcg aagccgcacg     11040
     caaacgtgcg atcctccggt gcagcaccat cgacgtcaaa tcctgtaacc cggacacaga     11100
     catccacccg acaggtcaat actgtattca aatgggcaca cgtgagccgg gcagcgccac     11160
     aggcacgccg tccggccccc cccaagaccc cgaccccccc gccagggtct acggcccgga     11220
     cggacgctgc ataggaaccg ttagcgctgc ccgacttgcc ctactccacg cccggtacag     11280
     gacccttaac cccactcacc ccccggaaag gttcgctgcc gccctggcct ccctgattat     11340
     acggtaccgc cccagcaaac gccacaagga gagttccacc aacccagcgc acgaggtcac     11400
     cctctgcccc gacctgatgt ccacgctcac gtcccatatc aagttccaga cggaggcatt     11460
     cgcatctccc ctcaacgccc actgcgacat cccagcatac tacactaccc acccgcaaga     11520
     ttcagagttc ggggccgccc acgactgcta cagccgcacg ctagatggaa tctccttcgt     11580
     tcacccaccc ccacaacccg agcacaccag cctggccatg gcgtgggcgg tcgccagcgc     11640
     cgaggcggca acaccgcaca caccgcacct gtccgtcgtg gtggtcccgt atggcgacac     11700
     cagcggctac acagcctggc tccagcaccc actggtccac gacctggggc acatcaaacc     11760
     ggcgcacacg tgggccgcca tggcctccgg cctaggccag ccgcaggagc tccccgctca     11820
     ccgacgtgga ctccacctcc tgtgcgtgac aaacgaaagg ggccgcctcc tcctcaatca     11880
     ggccctggag agtgggcttg cactcgccct agcggacgcg ctcgggcaca ccccgcacct     11940
     agctacccgt aaacccccca cggacccaga cacacccaac ccgtggcccc caaccccccg     12000
     gaagttaaaa cggcgcatcc tcgcccagag cagccagacg ccccagcccc agccccctcg     12060
     cgatgccccc accctaccat cccctacgga gcttgcaacc ctctaccgcg cttatgtccc     12120
     gctcgcacac acacgaggct ccgcggtctt taccgacggg agcaaagtac cacacacacg     12180
     agagtacacg ggtctgggag cggcggtctg ggacgccagc gacaaccgcg ccacgcacat     12240
     tgatgaagac atcgccttca acacacccct gagcaccatc cttcggtgtg aatcatccgc     12300
     catacgcacg gcgctccgcc tccatcgcga cacacctcac ctacgggtct acaccgacag     12360
     tcttgtcagt ctgttcatcc tccgtcgcgc cattatggag cccgagtcac tccacgtaag     12420
     caagcaccgc gagatgtttg ggaccatagt cgaccaactt gcggaacgtg ccctagctgg     12480
     acacaagaca tcattttatc acgtacgttc gcaccagaca gacacatgcg taggaaatca     12540
     gaaagcggat gaagcggcac aggctgtggc caccagaaca gtgcagccgg atgcgacaga     12600
     aactctatac tcgcacccat atgaaccctt agagggatgg attgcccaga aggaaattgt     12660
     ggagcacaat ggcaatttgg aagaacggtt gcgctacgcc aacgacctca atcgcgacct     12720
     gaagaaaatg gcccgtaaat ccaccgcgac cggttatacc aaatcaggac tgtacgcgga     12780
     actatgggag gcagcgagga agcacatcga cgaacgctac ggcctaaacc tgttcgacaa     12840
     gttctcattt gaagaggccc gctgcgcgtt caaataccgc tggggcctct cctggaatgc     12900
     caagcgggcc gcaagagtaa aacaccccat gcccggctgc gcaggcggcg aatgccccct     12960
     gtgccgcggc gacgacggtg gcacgcacac cctgggcggc tgcacccacc cacgcatgaa     13020
     agcagcctac attgcgcgtc acaaccgcgc tgtccagcgg atagcgaaag caattagtca     13080
     gggccactat ggaggctgcg ttatgtacat ggacgccggt aaggatgccc ccacttacag     13140
     cgggggaacc cgcatccctg cgtggatgct ccccagcacg ccagagagcg tgcgcaagaa     13200
     gctccgtcca gacctgctgg tcattcccac actccggatg cacaggtccg gactgccagc     13260
     ccgtgcaccc cgcacacgcc gacaaaggag cgctcataag gtctacgtca tagaagtcgg     13320
     atactgctcg gacctaaacc acccggacaa acgcgcagag aaactgcaac aacacgaaga     13380
     cctcgtggcc gctctccgcg acgcaggctg ggacgtgatg tacagcccag acactgtaat     13440
     tagccttggc catactggca cggtcacacc ccaccttcat gccctcctca aaacactcgg     13500
     atgccccaca cagtccgcac acagcacatg ccgtaaacta gtgcagcacg ccgtccacac     13560
     cacaaccgcc atcacagccc tccgccgcga aatctacagc cacaaatggc cagggagacc     13620
     accataaaac cgtatgaccc gctgtgggaa aggggccagg cccagtacgc ctaggcgcac     13680
     tggcaacctc ccctctctca cttgggggac aggggctcag cggcggagac catctatgcg     13740
     gtggtctctc acgccctcac acccctacct ccgcagaaca cgccctgtca tgcagggagt     13800
     acctattatt attattatta tt                                              13822
//
ID   RandI-4     repbase; DNA   ; CHL   ; 7807 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-4 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   AP endonuclease; RNase H1; RandI superfamily; RandI-4;
KW   non-LTR retrotransposon; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-7807
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-4, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 199-199 (2004).
XX
CC   [1] Consensus
XX
CC   RandI-4 is a family of RandI non-LTR retrotransposons.
CC   Approximately 50 copies of RandI-4 are present in the genome.
CC   The 5' terminal portion of the master RandI-4 element is not
CC   completely reconstructed. Most of RandI-4 elements are shorter
CC   than 100-bp and represent the 3' terminus of the RandI-4
CC   consensus sequence. The consensus sequence encodes the 2548-aa
CC   RandI-4p protein (nucleotide pos. 1-7644) composed of the AP
CC   endonuclease (aa pos. 130-350), reverse transcriptase (aa pos.
CC   770-1070), and ribonuclease RNase H1 (aa. pos. 2030-2190)
CC   domains.
XX
SQ   Sequence 7807 BP; 1945 A; 3122 C; 1696 G; 1945 A; 1 others;
     aaactcggcc ccacacccgc agccctcgca caggaccccc ccactaaccc taccggcggc        60
     ccccccgccg gccccaacac cacaaactcc cctagcccgc ctacgagcgc caacccaggc       120
     ccagccgccc gaagcaacac tgccacgcgc atcgtgccca aaccagcggg ccccacaaaa       180
     cgccccgcca ggcgtacgcc caaccccacc cctaaactac gcaaactcgc caccggcacc       240
     cccagcgcac cgccgccagc caagagactc caccagacca ccatagcaac atcgcacaaa       300
     agaagacaca cggccacact ccaaaacaca cccaccgaac ccacaaacgg ccaagcccag       360
     gccagcccct ctccaccccc cgacggacgc atctccatcc tcaccctcaa caccagggaa       420
     ctgttgagtc accatgaaag catcctccac acggtcacca cacacacccc cgacatcctc       480
     ttcctcaccg aaaccaaaat tcccacccgc ctccactaca gcatgggcag cgctaaaaaa       540
     ggcctctcct cgcactacca aacctacacc agcaacgcac cctacaaccc acgagaggga       600
     acccgccccc atgccggcgt catggtcggt gtcacccacc gctttagccg cccgtctggc       660
     accacagaca tgaatgcaca caacacagac tcacgcctgg caggccacgt ctgccacata       720
     cgcattgcac caccacacag cacgccagta cacgccattg gcatatacgc ccccagcgac       780
     gacgccaccc gtgctgcaat ctacaaatac tgcaccgacc aagccgccaa aacgacagcc       840
     gcgaaagagc atctccttat tggaggcgac tggaacgcag tgctgttccc ctccgaccgc       900
     agcacaggcc agctgaacgc tacggaccgc gcccacattg ccttcaccac ctcggcgggc       960
     ctgcacccac tcacaccgcc cacgcacgaa cacccccggc cccacacgta cctacaagat      1020
     caagccacgg caccacacat gagccgcatt gacgacctac tagtaagcca ccacacacac      1080
     gccaccatca ctacaacagg aggtggacag gaagcagtgc atgaatgcgg tgatgccctc      1140
     gaccaccgtg ccctcctctc cagcgtcccc ctcgctgccc tccgcctcta ccccttcccc      1200
     acggcacctg ccgccccctc cgaccctgac gcatgggtaa actaccatcc accaaccaaa      1260
     gaccagcgcg agaaagcgcg catcaagatg gaagaaacca ttgggcaaga gatcgccgac      1320
     ctactgaaca cgctacaccc cgcgcacctc gccatcacca ataagctata cccggccggc      1380
     ctcacccctg cccaagccga gcggaacacc ccaagccctg cggaattccg cgcccttccc      1440
     gaagttagtg cagccgacac cacgtccatc agcaacacac tcgaatccat cctccaaaag      1500
     tgcctggacg ttctcaaatc ctactgcgac aagaaaccgc cgcgcgccag cactacaagc      1560
     ccacgacacc acacgtcaaa aacagtgacg cgcctcctga ctgccaccag caagctcaaa      1620
     gaacgactca cagccgccct tactgtcaca aacgcagcgg gcgccacccc acccaccacc      1680
     tcacctcacc ccgccccgac gcccccaccc aacaccacca gtcccacacc taccccgccg      1740
     acccccgcag aagccgacac acccaccgcc atccggagtc aactactcaa cgcacgcacc      1800
     ctcctccgtg ccgcaaaaaa ggaagcaagg aaactcaaca ccaaacgggc agcccgcgcc      1860
     ttccgacgac tggttgcaac acagccaaag cgcgcacacc agaagatctt cgatgaaacg      1920
     gaccagccac gcggcacgcc cgccctcact gaccccacca ccaaagaagt ccacaccgca      1980
     cccgagaaaa tcctgagcag catccaccag cacttcaccg ctcaactcct cccaatcaat      2040
     ggcccccgca caggacacta cgacataccc cacagcgaga aacagtaccc ctggagccgg      2100
     cccgacgcac ctgatcgtat gccggcccta tccaagccaa ccgacgcacc cgccacccta      2160
     ctgcccggca tagccgacag cacaacgttc tttggctgcg tcaaccacct gtcccgccgc      2220
     aaggccccgg ggcccgatgg aatacccaac gaactcctcc agacaatacc aaccagcctg      2280
     cagacagcca tccaccaact catgaccctc atgtgggtga aagcgcacat ccctacacac      2340
     tggacacagt ccgacaccgt cctcctaccc aagaagggag accccctgct gatacagaat      2400
     aagcggccta tcgcgctggc caacaccctc tacaagctgt acacctctct catcaccgta      2460
     aacgccgccc tgtttagcga acaagcccac attttcacgg agtcacaaga aggatttctc      2520
     agaggccgca ataccgaacg gcaagtccaa aacctgctcc acgcaataga agacgccgcc      2580
     accaccggac gcgacctctt cctactgtac attgacttca cctccgcatt taacacgatc      2640
     gaccatgaca aactgctcat cgtcatgcac gatctaggct accccaccga cctgattgag      2700
     gtggtacggg acctctacgg caaggcagcc accagcgtgc gcactgaaca cggcaccaca      2760
     ccccccatcc ccatccaacg cggcacggta cagggcgatg tcctgtcacc gctactgttc      2820
     atcatcttta ttgaaccgct gctccggtgg ctacacgttg gcgggcgcgg gtaccaatac      2880
     ggatgcctca ccaaagccga aaacgacaaa cacaacctca gctccggcgc cttcgccgat      2940
     gacctggtca cagccacaac ccaaatctca aatctacgaa tccaagttga aaaaattgag      3000
     aaatacgcag catggggcgg tttgaaggtc aacgtctcca aatgccaact acaaggcata      3060
     ctccacggcc gcgcgcgcgc cgaccccacc cttggcggcc cccgcagcaa gccccaccag      3120
     gcagcgctcg cccggatgct tgaaggccaa atccgcatag atggcaccgc tatcccatac      3180
     aagcccccgc atgaatccta caaatacctt ggcatccaca tcacccctac cctagactgg      3240
     agcgcacaag tacagtacat ccgggaaaag attaagaagc gagggcaacg catcgccaca      3300
     tcacttgcca caccagacca aaagctccga atgatacaac ttaccatcca cccagcagtg      3360
     gcatacagcc tcccgttcat gccgtacagc acacacgacg tcaccagcct cgactccctg      3420
     attgccagca ccgccaaaat gtgctacggc ctgaaacgag gcttccccac ccgcgctatc      3480
     ctccaaccca ccaacgccct tggcctgggc gtaggcagca tccgcgagct gtatgtccgc      3540
     cgcgccggca aggctctcgt ccaggccctg aacgatggag gcaggctggg cgccgtcacc      3600
     cgcgccatgc tccacctgca acacagcgtg gcacagaaga tacccgcaga tcagctccgc      3660
     acacaatgcc gcttctatac cagcctgcga cagctgtcgc tgatcacaga cgcgggcctg      3720
     gagctgaccc aacagggcag cgcataccac actacactac acggtttgtc ggccctcctt      3780
     gcacgcaccg tgccgccagg cgccgacgcg gaacaggccc tgcccttccg attgattcaa      3840
     cccctccttg aactcaccag cgacttccgc gagctcctca ctccggaccg cacctgcgtc      3900
     atcgatgcca acactctaaa aaacacatgg ccgagggccc aaaggcggca caggctagcc      3960
     ctcaaccgtc tcactctcgc actccacgct gaaacccgaa ctcgcgccaa aacccacaac      4020
     agcaccgctc ccctcaccac tgcccagcgc actcttccag atggacacac cttcactggc      4080
     ctccacacgg cccacaccgc acctgccgcc gtcgactggg gcacgcttaa ccgcttcctc      4140
     cgccagcgcg cccccgccac cggacagact gccaacgccg gagaaaccgc tgcggccacc      4200
     accgccgccg ccaccaccgc ggcggccgag cctgaggagg accaccacgc cggcgagaac      4260
     catgcacctg cacaaacacg ccggccaggc acacagcaac gtaagcgggc ttgcattaag      4320
     atggtcaggg aacctgaagg tcgtggatca ccgcctgctg atgcgcccgc agcatttgat      4380
     tgggatccat cgctcgatcc gcttacagaa gcacactgcg cagacctgat ccataccgcc      4440
     cctagcctcc tcggcaaatc caagccccaa aaccccgcgg cacacctcag aggcctgctc      4500
     ctcggcccca cacccccagc cacattcaca caccgacaca agctcagtca ggaggagcaa      4560
     gacgcgtacc tagccgccac gtccgacaca tggaagcact tcagcgaaac ctaccgcacc      4620
     aaagccctaa ccaccaccaa caccctatac gggcaacagg agcgagtaca acaagtgata      4680
     gcgcacacca ccagcaaagg cgcgcccttt taccgagtcc agtgggaacc caccgtcatc      4740
     acccccggct ccctcaccct ctacgcccgc aaccgctacc gccccaaacc cggcggcctt      4800
     acctggctcc tcaccccagg taacgaacct cgcgtccttg tggaatggga agacttggaa      4860
     gaacccgccg ctatcctgga tgcacaagac aacaagcagg aactcctaga cgcccttaac      4920
     gcccgcctcg ccgtccccct gggcccccgc ccgccacccc ccgctacgga cacccacctc      4980
     agccacgacc agcgacaggg ccgctggaca gacgccagca atgacacagc acgagggcag      5040
     cgcactctgc gccactacgt agatatcaac gttgagccct gcaaccctag ccgagacatc      5100
     caccccacgc aagcatacac cgtccagctc ggtacagtcc tcgaccccgg ctccccggca      5160
     tgcggcaccc acctggcgca tgtctacgac ccccgcggac ggtgcatagg caccatcagc      5220
     gcagagcagc tcagcctcct gtggcaacgc taccagcatg cacaaacaac ctggcccaaa      5280
     gtgcacgcca agcacgatca gggcagaggc tttgcggccg ccatcgcccg cctgctcctc      5340
     cgatacaaac ccgggggcgg ctccaaatcc caccctgtta ccgaaaaagg cgaatgcatg      5400
     ctgtgtgaag ggctgacgca aaccctgcac acagcaatag gcagcacaac ggagctcttt      5460
     gcatcacccc ttaacgtctc ggacgccgcc accacctact acacactgta cgaagaagac      5520
     atgctctttg gggccaacta tgatgcgtac tcacagccat gggatggagt tgctgtcgcc      5580
     tgccccgaac ccaacaccga agacggagct cacgcagtcc gctgggcact agcatgggcc      5640
     gaacacaccg aaacccttac aaacacccgc aacccgccaa ccactgccac gctgctcatc      5700
     ctccccaccc aacgcaacgc gccatacaca cgatacctcg cccaccccag agttacactc      5760
     cttggcagca tctccgccac aacaacacac gcccttctcg gccagatcca caacgacaca      5820
     ggcatcaccc taaaacacga cctagtgctg gtcagcaata cacccggagc ccaactcgcc      5880
     cagcccatac gcgacgccct aggcacatcc ctatacctct cgggcatgcc cgtcgacccg      5940
     cagccccaac tcacgtgggc ccacacgcga tgggtaacca agcaagttcg ccggatgacc      6000
     cgcacccgtc cggcggcacc ccgggtaaca ccccctcccg taccggccac gccagccacc      6060
     ctggccccct tcgcggccac ccagcccctc cgcctcaatc cctatgaagg cttctacacc      6120
     gatggctcag tgcagaagga cgccctcggt cagcccagcg cgtggggggc cgcagcgatt      6180
     gatgcccgca cgctgcgctg ctatcaaatc gacgtcaacc ctgggcaaca cggctgtaac      6240
     accatcacac gctgcgagct ctcggccata caccaagtgc tcaagctaga cgaagtgcaa      6300
     gcgctccccg aagtcacagt atacactgac tccgctgcgt cgctgttcct catccgcaaa      6360
     acaatcaacc agccccaact cctcaccttc agcaaacaca aagcgctgct ggataacatc      6420
     ctcgcgctac tgaaacgccg ctcccacgcc ggccgccgga ctaatctcct caaggtcaaa      6480
     gcacattcag ggattgcgca caatgaactc gcagatcagg cggcggtgaa aaccgccaag      6540
     ggggaacaga tacccggggc cgagtggctg gtcgaggaat ccgataacga cccgcgcagc      6600
     aaatactact ggatacgtaa aataataaaa ccgactgtgg aaggggtgcc acgagagaag      6660
     aacgaaggac actacgcgca tgacctcaac cgcggcatcg ccacgctcgc ggccccgcac      6720
     atcgcccaag gccacacccg cgaaaccctc tacactggct tcgtygccaa cgccatccca      6780
     gacctggata tcaaatccag cacccgaacc atgaacctgc aatcaggccg gcaccgcaag      6840
     gccaaacgct gcatggacta cctgtacggg caactgtgga acaacaaact cgcagcccgc      6900
     ttcggccgca cagttacagg ccgccgagcc ccccgcgctg gccccgatac ccccgcccca      6960
     tgcccactct gccgcggacc cgactccggc ggccatatac tgggaggctg ccacaacccc      7020
     caactccgtg caatgtacat taaacgacac aacattgcag tccagaccat cgcacgagcc      7080
     atctcccgtg gtgactgcgg cggctgctac atggtaatgg acgccacgtc taaagccgat      7140
     ctgccagact acgcggctga caaccgcctg ccgccgtggc tgctccccga ccaggagggc      7200
     aaaccagcag gacgccacct acactaccgc cccgacatcc tactaatccc ttccatctcc      7260
     ctcgccgcag ccctaaaccc agactttgtc gtgcttccca gcgaacacga caccatccac      7320
     atcatcgaag caggatacac cgccgacacg aaccacgccg ccaagcaaca cgaaaaagca      7380
     caacagcacc aggcccttgc agccgacctg cgggaagcgg gatggaaagt gcaatacacc      7440
     ccgcagagcg ccatcagcct cgggtttgca ggcacaatcc gcaaggacct ccaccccctc      7500
     ctcacctccc tgggcgtcac ctcccacaaa gccaggcagt gctgcgacac cctacacgac      7560
     cacgcagtcg ccaccctcaa ccacatagtc ctgaccagac ggcgcctcga acggggactg      7620
     ccacctggcg acccgggcgg gacgtaacat cctggcgggg tgcaggcctg gcctgcacgc      7680
     ccgccttcac atgctcggta gtgggggcgt acaggaggcg ggcctggccc acctcctcat      7740
     ctccccccac tcccttaatc cacaccactt gcctacggca gggtgtctct atttctattt      7800
     ctatttc                                                                7807
//
ID   MSAT-3B_CR  repbase; DNA   ; CHL   ; 92 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   MSAT-3B_CR is a minisatellite unit - a consensus.
XX
KW   Non-autonomous; MSAT; MSAT-3B_CR; MSAT-3_CR; satellite;
KW   Interspersed repeat; minisatellite; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-92
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-3_CR, a family of minisatellites from the green algae genome.";
RL   Repbase Reports 5(3), 59-59 (2005).
XX
CC   [1] Consensus
XX
CC   The MSAT-3B_CR is a subfamily of MSAT-3_CR minisatellite.
XX
SQ   Sequence 92 BP; 18 A; 31 C; 29 G; 18 A; 2 others;
     ggctggatac ggggtaaagc tctcaggcac acgcaccgcc gctcacgccc aacgccktat        60
     cagggamagc cgggggaacg ccttgtgccc tg                                      92
//
ID   DNA-2-7_CR  repbase; DNA   ; CHL   ; 710 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   DNA-2-7_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   7-bp TSD; DNA transposon; DNA-2-7_CR; unclassified superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-710
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-2-7_CR, a family of nonautonomous DNA transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 32-32 (2004).
XX
CC   [1] Consensus
XX
CC   100 copies of DNA-2-7_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   DNA-2-7_CR is characterized by 14-bp TIRs and 7-bp TSDs.
XX
SQ   Sequence 710 BP; 161 A; 226 C; 163 G; 161 A; 9 others;
     cagggggggg gtaggaacaa acttttttga ccccatgcca caaaacctcc cggacccccc        60
     gaccgaccga ccgaccgacc ccccctgccg tacgaccccc caaaaccccc tcagaacccc       120
     ttagtttttt gtcaggttgg tgccaatcga ctgctctcgg tgagctctat cgctatgtaa       180
     matgatccgc cttgggaaca cactttgacc gaccgacatg tggacatgtg gacatgtgca       240
     cccgtatgcy gacaagtatc ctgatagact ggcctgctat gcaacggctt aytccaatgt       300
     tacttgatra tacgaaatgt gctgacacgt tcaccatgca aaacccggcc ggcaccggcc       360
     tgtccctgac cagttcccca ggcatctccc gavatgccga catgccgctc cccaaactgc       420
     cccaaactat gcacgtgtgc tgagtctggg gtatacctay gcacgcatcg ttgagctgca       480
     cccattgcgc cgcgygctgc aggacagaag cgctaggaac aaaacttggc acgaacctgt       540
     gcaaaacctc ktgggacccc agaccgaccg accgaccggc mactttgagg ggtcataact       600
     ttgcacccag aaacccattt tcaattttga aagcggattc gtgattttct cgttgagctc       660
     tatccatttg aggcatgggg tctgtttcgg aagattctac cccccccctg                  710
//
ID   SINEX-2_CR  repbase; DNA   ; CHL   ; 484 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   SINEX-2_CR is a putative nonautonomous non-LTR retrotransposon - a
DE   consensus.
XX
KW   SINE; SINEX-1_CR; SINEX-2_CR; nonautonomous non-LTR retrotransposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-484
RA   Kapitonov V.V., Jurka J.;
RT   "SINEX-2_CR, a SINE-like non-LTR retrotransposon from the green algae
RT   genome.";
RL   Repbase Reports 4(2), 46-46 (2004).
XX
CC   [1] Consensus
XX
CC   Several copies of SINEX-2_CR are present in the C. reinhardtii
CC   genome. They are ~99% identical to the consensus sequence.
CC   SINEX-2_CR are flanked by 14-bp target site duplications.
CC   SINEX-1_CR and SINEX-2_CR share a common ~330-bp 5' terminal
CC   portion.
XX
SQ   Sequence 484 BP; 114 A; 106 C; 152 G; 114 A; 0 others;
     atcaccggat cgctaactag tttagcgatt tgaatcgtcc ttacggcaga agggacccgg        60
     gtacaaatcc ggatgaaagc ccaattatgc aaaaggcgaa agattggtgc gaaaccgatt       120
     ggtgatccca cgaatgaaaa aggtcgtggt gcagaagtcc gaattagagg cgtccaaggt       180
     gcggtccaag gtccaagatc caaggtcgaa gcaggagcgc catggctctg gcatgttgca       240
     actaactggc agtgctccgc agctttagtg cggcgttccc tagcgacata gggtgatggc       300
     taggataggg cggctcggat tggctaggat aaggtggctc ggatgtgcta ggatgatggt       360
     ggctaggatg cggtggtgca gaccgtagag tctgcttggc agtgctgggg ttgcactcgc       420
     aagcgattct ccgataatct cacgctagga gcttaggccc agtgtaacct ttctttcttt       480
     cttt                                                                    484
//
ID   Mariner-N1_CR repbase; DNA   ; CHL   ; 528 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N1_CR is a family of nonautonomous Mariner DNA transposons - a
DE   consensus sequence.
XX
KW   mariner superfamily; Mariner-N1_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-528
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N1_CR, a family of nonautonomous Mariner transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 129-129 (2004).
XX
CC   [1] Consensus
XX
CC   Mariner-N1_CR is a family of nonautonomous transposons. The
CC   consensus sequence is less than 5% divergent from
CC   Mariner-N1_CR copies. Features of Mariner-N1_CRs include 24-bp
CC   terminal inverted repeats and TA target-site duplications.
XX
SQ   Sequence 528 BP; 137 A; 141 C; 132 G; 137 A; 0 others;
     ccgtagtgat aaaaaggttt cgggactaat attttcggga cagggtcgga taatatattt        60
     caaactattc gggaaattaa atattcggga cggccagcgg cggtaattgc aaatctgatc       120
     caaagtttcg ggactccgtc cggaccgcgt ctgggctgtc tggcctcagc catgcgcggc       180
     cccactgcat gcacgccccc actataagat ttcgcactcc tcaagtgaga gacagcaaac       240
     cacagccgtt ctacagccac acagcagaca ccatgcccgc atgtgaatat gctgcgctaa       300
     acggcgcgta catgggctta ggatgctggc gtgccaaacc ctgtgccgcg cactgagacc       360
     ctcatcccct gtaagcgcgc gcagcgcgcg ctccgaaaat atgatgtgat gtggggtgat       420
     attatatttc gggacaagag caattaaata attagttaaa taggttcggg actcaacttc       480
     gggacgctct cccgaactta gaaacccgaa acctttttat cactacgg                    528
//
ID   TCR1_LTR    repbase; DNA   ; CHL   ; 164 BP.
XX
AC   AF029671;
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Chlamydomonas reinhardtii retrotransposon TCR1_LTR, long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Interspersed Repeat; Long terminal repeat;
KW   TCR1_LTR; retrotransposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-164
RA   Ferris J.P., Woessner P.J., Goodenough W.U.;
RT   "A sex recognition glycoprotein is encoded by the plus mating-type
RT   gene fus1 of Chlamydomonas reinhardtii.";
RL   Mol. Biol. Cell 7(8), 1235-1248 (1996).
XX
DR   Genbank; AF029671; Positions       1     164.
XX
SQ   Sequence 164 BP; 37 A; 47 C; 53 G; 37 A; 0 others;
     gagctatggg cggctcccca gggacctttt tgcaccgggc tggggagggc agaaaagacc        60
     gaaagctcta ggggctgggg acctaggcat ctccccagga acaatttgta atcaaccgcg       120
     atggcagcac agctctcccg acctgcaggc atgcaagctt ggcg                        164
//
ID   LTR2_CR     repbase; DNA   ; CHL   ; 593 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   LTR2_CR is a long terminal repeat of unknown LTR retrotransposon.
XX
KW   LTR Retrotransposon; Interspersed Repeat; 4-bp TSD; LTR2_CR; solo LTR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-593
RA   Kapitonov V.V., Jurka J.;
RT   "LTR2_CR, a long terminal repeat from the green algae genome.";
RL   Repbase Reports 4(5), 127-127 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors about 20 copies of LTR2_CR; they are 95%
CC   identical to the consensus sequence. LTR2_CR is a solo LTR.
CC   The LTR retrotransposon it was derived from is not known yet.
XX
SQ   Sequence 593 BP; 113 A; 148 C; 197 G; 113 A; 0 others;
     tgtcacgccc cagcgggtta cctagcatag cgtgtcaccg tgctgtgttt agctgtgccg        60
     atgcgcgtac ggcagacgga agggcaagac ccggggttcc gcaagaggct gtgaggggag       120
     ttgccggtcg tgccagtcgc gtgtgtcgtg tgttgtgttc gtagaaccgg gtggctgagc       180
     cgttgactgg gctcaggccg ccgcgtttcc cagtgtatcg tgtgtatgct atgttgcatt       240
     agcctcgtgt gtttgggcgc cagtcgttag cggtcaggct tgactggtgg gcggtggctg       300
     aactggcccg cgtcccatgc ggagatagcg aggttagcgc gtgagagagc tcaagcaagc       360
     ttgtctttgc ttgagctact tgaacgacct ttcatttagc gatttcagag ttaaagaccc       420
     gtcagagcag tcacgtcaca gactgcgaat aattgtaata taccgagacg gagcacgtat       480
     tgtccgtcga ccgcctgttc tgctggtccg cggagcaagg gaccagagca gaccacagct       540
     caacaactag cggggcacgt gcgggttaca tcagcccatg ggaaggcgtg aca              593
//
ID   Novosib-N1  repbase; DNA   ; CHL   ; 787 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   Novosib-N1 is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; Novosib superfamily; Novosib-1; Novosib-N1;
KW   Novosib-N1a.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-787
RA   Kapitonov V.V., Jurka J.;
RT   "Novosib-N1, a family of nonautonomous Novosib transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(7), 194-194 (2004).
XX
CC   [1] Consensus
XX
CC   Novosib-N1 is a family of nonautonomous Novosib DNA transposons. It
CC   is composed of ~50 copies that are ~95% identical to their
CC   consensus sequence. Novosib-N1 elements are characterized by
CC   8-bp target site duplications and by imperfect 17-bp terminal
CC   inverted repeats (3 mismatches). Novosib-N1 shares ~80%
CC   identical 5' 50-bp and 3' 250-bp termini with the Novosib-1
CC   autonomous transposon. Therefore, transpositions of Novosib-N1
CC   elements were mediated by a Novosib-like transposase.
XX
SQ   Sequence 787 BP; 178 A; 232 C; 217 G; 178 A; 0 others;
     caacccgggt tcactcgggg cgtgcccata cacgccgcac cgtccaaaga ccaaaccttg        60
     cctaaggctt atacatgaca tatgtatgtt atgacttgtt gttttaagcc ctggcgcggc       120
     ctgcccgctc gccgagctcg cgaaatgcag cgacatgccc cgacaatgtg cacgaagagc       180
     tgcttttagc cctcgcaaag ccttgaattc ccattcttat agctgaaagt agacacggca       240
     acaatcacgg tttgaaaaaa tggctcctcg agggacctcg gtcgcgaaat tgccggtcgg       300
     cagagcctca cattttgccc cgggatacat tccaatgcaa tattgggtat ctaaataaca       360
     tattgagtga gttactgctc tctccagcac actttggccc gatcggaccg acacgcgccc       420
     atcgggcgca tgcctggcgg gccaaaaccc gcccatttcg acctcaggcg agcgcggacc       480
     gccctcccac ttgaccagca agtcattact acatgcacgg aggggctgag agcgtggggg       540
     actcagggga gaccagtttg gccacgggga cccccctgcc cacccccatg accccccgca       600
     cgggaagggc cgtacggcag tggtagtact gtcggacggt gaatctgaca cgacaggcgt       660
     gttcatgcga tttgtggggg gtaggtaagg ttggtttcca cgtcggactg tactaccacg       720
     actaaacaca ggtccaaagg ttgtgcagtt ttgggacggt gccccaaact gaagtgaacc       780
     cgggttg                                                                 787
//
ID   Copia1-LTR_CR repbase; DNA   ; CHL   ; 217 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Long terminal repeat of the Copia1_CR retrotransposon.
XX
KW   5-bp TSDs; Copia1-I_CR; Copia1-LTR_CR; LTR retrotransposon;
KW   COPIA superfamily; endonuclease; protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-217
RA   Kapitonov V.V., Jurka J.;
RT   "Copia1_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 103-103 (2004).
XX
CC   [1] Consensus
XX
CC   Copia1-LTR_CR is a long terminal repeat of the Copia1-CR LTR
CC   retrotransposon, whose internal portion is deposited in
CC   Repbase as Copia1-I_CR.
XX
SQ   Sequence 217 BP; 55 A; 55 C; 61 G; 55 A; 0 others;
     tgtcgtattt ggggggctca gcggttcggt ctgccccttc ccccatgcgt gtcattgcga        60
     tggtctaagg agcctatagg gccgagagta agcccgacct agactaagtc gatataaggc       120
     aacattgcac taagtggttg gtatggcacc aaaggaacgg agcctgtaaa cctggagttg       180
     cattgcccgg tagaacgacc cacaccagaa tacaaca                                217
//
ID   L1-2_CR     repbase; DNA   ; CHL   ; 5292 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   L1-2_CR is a L1-like non-LTR retrotransposon - a consensus.
XX
KW   L1 superfamily; L1-2_CR; endonuclease; non-LTR retrotransposon;
KW   reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-5292
RA   Day A., Rochaix D.J.;
RT   "Characterization of transcribed dispersed repetitive DNAs in the
RT   nuclear genome of the green alga Chlamydomonas reinhardtii.";
RL   Curr. Genet 16(3), 165-176 (1989).
XX
RN   [2]
RP   1-5292
RA   Kapitonov V.V., Jurka J.;
RT   "L1-2_CR, a family of L1-like non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 40-40 (2004).
XX
CC   [2] Consensus
XX
CC   Several hundred copies of L1-2_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence and
CC   constitute
CC   ~0.5% of the genome. Since some elements are identical to each other,
CC   the genome harbors currently active L1-2_CR elements.
CC   The consensus is incomplete at the 5' end. The reconstructed portion
CC   encodes the 1439-aa L1-2_CRp protein (pos. 639-4955) composed of
CC   the endonuclease and reverse transcriptase domains.
CC   A subset of more than ten L1-2_CR elements is characterized by
CC   a remarkable target site specificity. They are inserted
CC   in different copies of the DNA-2-7_CR transposon at the same site
CC   (position 593 in the DNA-2-7_CR consensus sequence; usually the
CC   593-601 region of DNA-2-7_CR is duplicated around the L1-2_CR
CC   inserts).
CC   The DNA-2-7_CR sequences that harbor the L1-2_CR elements are less
CC   identical to each other than the L1-2_CR sequences. Therefore,
CC   the L1-2_CR and DNA-2-7 elements cannot be different parts of the same
CC   composite transposon.
XX
SQ   Sequence 5292 BP; 654 A; 1572 C; 2036 G; 654 A; 0 others;
     cccttcttgt aatgtcgcct tcataacttt gacgatgagg tgatgccgga ccggacgccg        60
     actgcgctgg acgctgcggc agctgcggcc cggcgtgcgg cccccaagcg gagccgggaa       120
     caggcgcagg cggcggccgc ggcgggcgag gcggcgctgg cgctggccat ccgggagagc       180
     aaggcggtca aacaggcctt ggcgacggcg gcggcggtgc gagccgccgc gacagccgcg       240
     gcggcggcgg cagcagcggc cggggccacg ggcaccccga cggcggccga ggccggggcg       300
     gccgcggcgg tggtcgcgac agcaggcgtg agtggcacga tggccgccgt agaggccacc       360
     gctgcggcgg gcgtggagcc ggcctcgccg ccggccgcgc cggtgtcaac ggcgggcttg       420
     gggggcatcg tgggcccggc agtcctgccc gcggggtgga gcagcgacgg tggtgtgggt       480
     gatgagggcc tggcgggcgg cgtcgggcag gggctgctgg gggatgcgga gacagcgccg       540
     gatgccaacg cgaagctgct gtgtcagggc cggcggggcg gtcctggcga cttcatggac       600
     gttagctcgg ttgccccgcc cgggggcggg cagcagtaat gcggcggccg aagcaggccg       660
     ctccggggcc ccggcccttg cgggtggggt cgcataacgt gcgggggctg cggaagcggg       720
     tgccccacct ggggtgctcg cgcctgcacg ccctgctgag ctgctgggaa cggcagcgcc       780
     tggatgtggt ctgtctccaa gagacgcacg ttcttgactc ggacatcgac cttgtcacgg       840
     cggacctggc ggcagccgct cagcggctgc atgcacgcga gtggactgcg tggtgggcgc       900
     cggcccagaa gccggagggc cgtcgtgtta ctggcggcac ggcaatcctc attcggtcga       960
     gccttctgca gcaaggcgcc atggtgctcg ctggcggcgc agctgccgtg tcggtggcgg      1020
     ctggcgcgtg ggcgggccgc ggtgttagtt tgcagttgca gtggggtggc cacaccttca      1080
     cgctgacgtc agcctacttt cccctggcat ccacagcgca gcaggctttc attcgtgagt      1140
     gggtgggcct gcgggcgtcg ggctcgggcg agcacctcct agcagctgac ttcaactttg      1200
     tggcagatgt ggcgctagac acagtcactg gccgggcgcg cagcgacgga cccgcagccg      1260
     ccgcgctggc ggcggcgtgc cctggcctca ttgacgtgtt acggcggcgc cacccggctc      1320
     gccgcgtgtg taccttcttc cacccccacg gggcgagtcg gctggaccgc atcctgtgca      1380
     gcggcggcct cgaaccgcag gtcctggagt gcggcgtcgc cgccggggtg ccctccgatc      1440
     acatgcttgt gacggttgcc cttgcggcgt cgcctgaagc cgcgccaccc gctcggagcc      1500
     tgcccagggc ccacctcggt ttccgggact tcaaagactt ggatcgtgac taccgtgcct      1560
     ggctgggtac ggccctggcg gcacgcccta ctgatcctgt tgagctgctg gagtggtggc      1620
     cggcccttaa acgggctgcc gccacgtccg ccaaccgcct gagccgggaa gctgttacga      1680
     ggcgtgtggc cgccagccag cgggaggcgg ccgcgcttga ggcggcggca gcagccgccg      1740
     ccgcggtgga ggctggcggt gatgtgcagg tggcggcgca ggcggccgtg cgtgcgcgat      1800
     gcacggcggc ggaggccgcc gtggccgcgg ccgccggcgc ggcgcgacgt acgcgccacg      1860
     cgtggctgcg tggcggcgag aagccctgcc ctctcctcac gcgcatgctg cggccggcgg      1920
     gtgggccgcg cgtgattgcc aagttgaaac agcccgatgg caccactaca tccgacccca      1980
     cggtcatggg gcaggtgatg gcgcggtact ggagggacgt cagtgccgcg ccgccgcccg      2040
     ctccagacgc ccgcacgcaa gtcctggatg cgctgcaaca gcacgggcgc cggtgtacag      2100
     ccgaagaggc ggatcagctg gggcgggttg cggtctcggc ggcggaggtg cgcgcggcgc      2160
     tagccgctgc gccggctggg cgcgcggcgg gccctgacgg cataccggtg gagttatacc      2220
     aacactatga cagtgatttt gcgccggtcc tagcggatgt gtttacggcg gtgggggagg      2280
     gggctggggt gcctgacggg ctcctggatg gcgtgtggtc tttcttcttt aagtcgggcg      2340
     accctaccga gccctctaat tatcgcccca tcacgctgac ggataccgat taccgcaccc      2400
     ttgcccgggt gttgtgcttg cgactgcaac cggtgtttgg gcgtgtcata gaccctgagc      2460
     aaactgcgtt tctgacggac cgtcgcattg ccgataacgt cctcttgctc caacttactc      2520
     ctggcctgtt gaaagccgcc aaaaaggccc cggctgtggc ggccttcctc gacttttaca      2580
     aggcgtatga tacggtggac cgctcttttc tgctcgcgtg tctggagcgc atgggcgtgg      2640
     gggcgggctt tcttacgtgg gtgtcccgcc tgttaactga tacacgtggg gcggcgttgg      2700
     tgaatggacg tgtgtcagga tgggtgccgt tgatggcggg cgtgcggcag ggctgcccgt      2760
     tggctccgtt gctctacctc gctgtggcac aagcccttct gtcatggcta cgcagccggg      2820
     ggcatggtgt gctcgctaac cttgcgtcgg tgctggcgtc ccagtatgcg gatgattgca      2880
     cgccgtttct ggaggggttt caggcggtgc cggggttcct ggcggacatg gatgtgtttc      2940
     ggcgggcgtc tggacaacgg ttaaatatga ctaaagttga actgatggtg atggggacgg      3000
     tcggcggtgc tggcgccctg ccggccggca tggctggccc gcccctgccc cctggctggc      3060
     gtgtggtgcc ggcggccaag tcactagggg tgcattacgg ggattggggc gcatgctccc      3120
     caccagttac gtttgaggcc gtgatggggg tgctgagcaa aatcgcgcgc atgcccgtgt      3180
     ccatgtttgg tcgggcggcc gcggcgtcgg cttatgcttt gggcaaggtc ctgtatcatt      3240
     tggaatttgc gggtcttccc caactgtacg ttgttgaccg gctgctagcc agggtagcgg      3300
     cggtggtgga tcggcgactg tcgccggccc agtttgatgc caacccccat gcacgcccgg      3360
     ctggcctctc cattgaactt atgcaactgc ctccggcggt ggggggggcg ggcctgttgc      3420
     cgctggtgcc gcatgtgaaa gcgcggcaag ccggtctcgc ggtccggtgt gtgttgggtg      3480
     tgtgtggtct gctgccgtac gtgcccccgt ggacccgggt cgcggcggcg tggctgcgcc      3540
     aggtgcaccc ggcggcaacg cccctgcgtt tgttggtgcg gggggccgcg gaccgtgtgc      3600
     tgaataagcc gctcaccccg gcgggcaagc cgtttgcgcg cctgctgaaa gccatgactg      3660
     cattgcccgc ggtgactctt gtggcgccgc ccgagccggg cgcgtgggtg agtcatgtgc      3720
     cgttgtgggc taacccggcg ctgtgtgagg acggccgcac gtgggaagtg gctttcgcgg      3780
     atttgttcgc tctgccggga ctggcgtgtg tgggccagct ggttgcagcg catgacggcc      3840
     tgaacgaact gcggcaggca ttgacacgcc cttgggcgga gggctcccgg tctggtgaag      3900
     cgtgtgcgga tatgtatgtg actgctgtgt ggcggcgggt gctgcactgg agcacgcggg      3960
     cgcgcctgcc gtcgcccctg ccggggccgg cgtcgcctca agaggcggcc gaccggtttg      4020
     cggcggcggt ggcccttctt cccgctggct gggctgccgc cgcgcgtgcg gcccagctgg      4080
     ctcgggggcc tgccgccgcg ctgccgctcc cggtggccga cgtcgtgagt gctacggcgg      4140
     agtcggtgca acgggtggtg cggggacttg gatggttgca gtgcgggggg ccgcccatcc      4200
     tgctcactgc ctacacggtg aaggcgggga ccgtgctaca aatggctcca cagttagccg      4260
     ccctgaaggc taagcatttg cagtatgtgt gcgatgcggg tgtgtcgggg gtgggggctg      4320
     ccctggcggc gggggccttc gtgtgcacct tggcccgctt gtggtcgctg aaatgggaga      4380
     atcatcataa ggaagcactg tggcgtgtgg ccgccaacgc ttgctgggcg tttccacggc      4440
     atgctagcga gcgggcgcga ggcgttactg ttgacccgtg ttgggcgtgt ggggtggaca      4500
     tgcaggatgg ggaccggcgt cactggtttt gggactgcac tgttgcgctg tcactgcggg      4560
     aaagtatggg gatggctatg ggtttcctgc cggaggaggc tctaagtgcc ttctctcgtg      4620
     aggagttgtg gttagtgcgc ccgcctgcgg ggcttgcgcc acctgtgtgg gatgtggtgt      4680
     gtctcgctgc tatgtctgcc ctggactttg gtcggcagcg tgtggttatg gccgggttgg      4740
     cggcgcgagc gaagctgccg tcggcccggg tgctgagcat tggacttgcc gtcgtagctg      4800
     acttctgggg tcgtctccag acgtttgtga ctttgggtat caggccaaag ggttgggacg      4860
     ctgtgccgtt tgcgcatccc ttcatatctc gggctgttgg tgacggcatg gttttgcgct      4920
     tgccgtatga cgctgattcc ccgcccccct cgccgtgaga ggttgtgcgt ggttggtggc      4980
     tctgtgtgtg ggcaggatgc acgtgtgggc gaccgttcta gtacctggac gcttgcgccc      5040
     tggttagtgc gtgcgctgtg cgtgtgtcct gcggcctaga cgtttcccgg cactcctgtg      5100
     cctaggcttg tggcgttgag gcacagcggt ggggctctgg cgggttgagg cttggctagg      5160
     actcactgtg cgcggagtca cacggacttt gcccgcggga gggtttgcag caaagtcggg      5220
     gttgggccct gatagcatgt gatggctcgg cgtcttcggg agctgggact gtcccctctg      5280
     taacatccgc at                                                          5292
//
ID   Gypsy-3-LTR_CR repbase; DNA   ; CHL   ; 881 BP.
XX
AC   .
XX
DT   24-MAR-2005 (Rel. 10.02, Created)
DT   29-MAR-2005 (Rel. 10.02, Last updated, Version 1)
XX
DE   This is a long terminal repeat of the Gypsy-3_CR retrotransposon - a
DE   consensus sequence.
XX
KW   Gypsy; Gypsy-3-LTR_CR; Gypsy-3_CR; Interspersed repeat;
KW   LTR retrotransposon; Long terminal repeat.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-881
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-3_CR, a gyspy LTR retrotransposon from the green algae
RT   genome.";
RL   Repbase Reports 5(2), 41-41 (2005).
XX
CC   [1] Consensus
XX
SQ   Sequence 881 BP; 138 A; 250 C; 309 G; 138 A; 0 others;
     tgtcgtgcgc cgttgccggc gtgtgtcatt caccggcaac cagtgcctga gtatgagtca        60
     tgaggcgggt aacagcgtgt gaacttagga gcgggaagtt accccagcgg ttgagaactg       120
     acgagctgtg ggtgggttgt gcgaactacg tcccggtgtg tggctagagg tttggcgtct       180
     gtggtttaat tgtagccgtg tgacggtggt gtctctctgg ctctggcgtc accttcgcct       240
     gcactgcgca gggcgaaggc tcgtgggctc gtgttggagg cgttgggcag ctggtcatgc       300
     gggcgctgag ctgaggagga gctgcgttgg gggtctgttt gccgtggtgc tttataagtg       360
     tgtgctcagg ggagcttggg gtccaggttt cgtagacggg cggttggctt gccctgctgg       420
     gtggtgagcg ttgggtgtcg ggcagggggc cgcccatgca ggaggcggtg gctccctagt       480
     cccgcaacac cggccctggc ccggtgttgc ggtgttgctc tctctcacac gacctatcgt       540
     gcgtagcttt gtgaaagcat cggagtgatc aaccgactgc tgcctcagac tcaacacctg       600
     gggccgggct gcggagcgcg ttcacgcaac caaactcaac cacggggcat cagttaccag       660
     ccgctcgcac gcagccgctg tagctagctc aattaaggcc cgctcggctt agtccaccga       720
     gcgcccagcc agctgggaaa gaccgccctc gcccccggag tcgccatcga cagctgacga       780
     gcagtcgacc gtccgccctc tggccctagc gagtggccgt cgccaaagcg ccttcagccc       840
     ccggtggcag ccctagagca aaacatggct ggggcgtgac a                           881
//
ID   RandI-5     repbase; DNA   ; CHL   ; 7466 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-5 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   AP endonuclease; RNaseH; RandI superfamily; RandI-5;
KW   non-LTR retrotransposon; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-7466
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-5, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 200-200 (2004).
XX
CC   [1] Consensus
XX
CC   RandI-5 is a family of RandI non-LTR retrotransposons.
CC   Approximately 50 copies of RandI-5 are present in the genome.
CC   They are ~1% divergent from the consensus sequence and are
CC   likely mobile. The RandI-5 elements are usually flanked by
CC   10-15-bp target site duplications. The 5'-terminal portion of
CC   the consensus sequence is incomplete. The consensus sequence
CC   encodes the 2457-aa RandI-5p protein (nucleotide positions
CC   1-7367) composed of the reverse transcriptase (aa pos.
CC   460-750) and RNase H1 (aa pos. 1930-2100) domains.
XX
SQ   Sequence 7466 BP; 1833 A; 2609 C; 1847 G; 1833 A; 0 others;
     ctaacgctgc agatcgcaca gggccgcttg actctgctga ccgactacac caacgctttc        60
     tggcacaaac tggcttatta cccgcacgag gcaccatgac cacagagggc gaatggtcct       120
     atgaacaaac gcaacatggt gtcacaacgc accgcagccg catagatgac atactcatgt       180
     gcacgacaac gctcaccgcg tgccccagcc cacacgagca cgtaagtaca gtcgcgggta       240
     actttgacca taaacctgta cacataaaac tgcctgctga cgcgctgcac ctatgggaag       300
     caccgcagcc cgcagcgcca ccagcaacaa catctgaaga cagcccacgc tggtctcgcg       360
     tgacgcttcc aatcaccaag aagcagctgg ccgccgctgc cgcccacttg gaggacataa       420
     tggtcgaggc cacggcagac ctgcacaatg ccagcaaggg cgcggtgcag gtgattgaca       480
     atgctctaaa acagcacact aaaaacccaa ccacctaccc ggcaaataca atgcaatggg       540
     acttggcgca caacagaatt gtacaacaaa ctgacgtgaa ccagctggct gagcggttag       600
     gcaaggctct cgaagacggc ctcacctgcc tacttgaaga gtgcacacta aaaccgccac       660
     acactgggaa acaccatctt tcccggtcag ctgcccgaca tcttaaacca ctatgggaca       720
     aggaggtgga actcaagcaa accctcacta acctgacagc cggcggtgca gcgccagaca       780
     caacaacgga aggagaggct gccaccatac gaggtcagat aaaggactgc caagcccaac       840
     accgccagtt ggtggcggac cgagccaaag cgcagcgtga agctgctgcc gctgccctcc       900
     agcacacgct cgccaccagg cctgcgcacg ggcacaaacg catctttcag aaagaagcaa       960
     cagaacgtgg cctccccgcg gtccgcaatc ctgaaacagg cgaggtggta accgaccctc      1020
     ccagcattct aaccgccctg gatggccact tccgcaaact gtcagccccc ccacgagggc      1080
     cccgcacagg tgaataccgc ctgtcacccg gcgcaacgcg tgggtacccg ttcgaactac      1140
     ctaacgctac ggatgccttc acgcttgagc gtaacaggca cccggaagca cactccatgc      1200
     tttctagcat ggcagacccc gccaactttg accactgtat cgcccacctc tctcgtaaca      1260
     aagccacggg cccagacggc attccgaacg agctgctccg catcttgcct cacggcatga      1320
     agcgagccct acacaacaca ctgaagatca tgtacgtcaa gtccacaatc ccggagtcct      1380
     gggccacttc ggacacggtc ctgctcccaa aacctgggga cgctcttgac atcaagaaca      1440
     agaggcccat cgctctagcc aacacttgct ataaactgta cacttctatg ctcaccctgg      1500
     gcatcggcga actggcaggc ccactccagc tgttcagcga atcacaggag ggcttccggg      1560
     cctactgcaa cacggaacgg cagatactga accttgtgca tgtactggag gacgctgccc      1620
     tgtatgggaa agacgtatac gcagtatatg ttgactacag ctctgcgttt aacacaatcg      1680
     atcaggacag gctactccag attatgttcg atctgggcct gcctgacgac ctgatacgcg      1740
     cagtccgcaa cctatacgcg cacgccacca cccgcattcg tactgaacat ggatgcacat      1800
     ccgccatccc aatagaacgt ggcacggtgc aaggtgacac cctgtcacct gtactgttta      1860
     tcttgttcat ggaaccgctt gtgcggtggc tccacgcagg tgggcggggc taccgctacg      1920
     gatgcctcag cccggaagac aatgcacggt accactgcag tgccgccgcg tacgctgacg      1980
     acttggcggc cctgaccaca acgctggaag acctgcagat ccaatgtgac aaaatctcgg      2040
     actatgcaga ctgggcaagc ctgcgagtca atcacaccaa gtgcgcagct accgctatct      2100
     ggcacaacaa gtcccggtcc accccaaccc ttgacggacc caccggccaa gccacgctga      2160
     acgcgatgca ccgtgaactg actaacaagc tacgaattgg taacaccact gtaccgtact      2220
     acccgcccac aaaaccctac aaatacctgg gggtgcaact caccttctca ctagactgga      2280
     aggcgcaagt ctcccgcgtc acggaaactg tgaaagaaaa gggcacggcc atagccacgt      2340
     cactggccac gccggcacaa cgcctacgca tgctgcagca atgcgtccac acctcaatcg      2400
     cctatgcatt tgctgcgatg ccatacacga aacaggacat cgcaaacttt gacgctacac      2460
     tggccggata cgcaaaacgg tgctatgggc tgccacgcag cttccctacc cgtaccaccc      2520
     ttctcccaat cgatgaatat ggcctaggac tgggctcact cttaccccag tacgcgcgtg      2580
     tggccaaccg cgcgcttgtc cttgctctaa acgacacagg ccgactgggc gtggttaccc      2640
     gtgccctcct gccacggcag catagcctgg cgggtgcgag cctcgcacac cacctacctg      2700
     cagacagagg gcgcttcttc acaactctgc aacagatgac cctcgctcgt gagcatggta      2760
     tacagctctt ttacaagggc acaccgtatg ccacccctac ctggtcaatt gtcgaggctt      2820
     tggacgccgc agctgcagcg cgtgcggcag cacccctccc tgtcgaacac gtgctcccgc      2880
     tagcggaact ccagctcgaa ttcagccact tggtcgaccg caatacgagc cgccatctga      2940
     ttagcacccg ggagctcgag aaactcctgg gggcaagcag ggtccgccac aaacacaaag      3000
     ttgcactcaa caggctgagt ctggccctgg ttgccacggc gggattggac ggagaccaaa      3060
     tgccaccgga aaaacacggg agcccgaacc cgcttccgcc tacccagcgt gtgatcccac      3120
     ccctggaaga actccaggcc ctctccgcac ggaacgaccc tcgacccccg ggcatggcac      3180
     cacccctcac cgcactcatg acgggaggcc ccgccccaca gcccctcacc ccagccccaa      3240
     acacaacaac ccaaatggac attgaagaag ccagcccact ctatcacaac ccgcccttgc      3300
     aatacacgcc aactgccttg gggcagatgg ccccaactcc tgccccagcc gcggataccg      3360
     cagctcccgt cgcccaaccc gaagccaacc tgcggacacg gccacggaag acgcccgtca      3420
     tgcgcactcc cacacaccca actgcccact cccgccgcgt cacgaaacac gctgcccaaa      3480
     aggcccgcat tgcagaaaac acgcgcacaa cacccgacga cctgctcacc ggtgataaag      3540
     ccgcaatcag cacggctatg cgcctcacaa atggagacga aagcctggcc gttggcacac      3600
     gtgggtacga aacggcacgt tcagtgttca cggccctggc aaaagacatg agcaggcaca      3660
     accacctctg caagccccac ccaagggacc ccccttcatt caataaccga accccggtta      3720
     cccgcacgca acggcccctg gcccccgcaa taaccactct gctcactgcg aatgcgacca      3780
     tgccgtctac tggcgccgtg caaacgtacc tccaccaagg gcagccagcc gcggccgccg      3840
     ctgaggaccc aatggacgtc gacgccgcag cacctgagca cgaccaaatg gaagtggacg      3900
     atagtcagca cgacctgatg gaagcggacg ataggcagca agcctcacca ctcaggctgt      3960
     ctcgccggcg gggcaagcaa acaatttgga aactagcccg ggaacgtgta gtcaaggacc      4020
     tggtccaccc tcccaccgat gactgcacca acggagatgc gcagcttacc tacgacctgg      4080
     ataatgatgg ccaggagctg gcggccatcc tgtaccgcac aaaccaacaa actgccacag      4140
     ataaggaaat tgcacgcaaa cgcaaagcgg gcgaggacac aaccaacacc cgcgagccat      4200
     actttgcggt ccaatggaag ccatctgtca tcccacctgg cctagtcacc gccttctcac      4260
     gcatgggcta cgccacggtc acagacgtgc gctgctacaa gcacccactg caggctcgcc      4320
     cacgcgcgac gcagccccac ccagacgggg ccggcacgac agacgcagac acagcaacag      4380
     cggcccaacc cgccggcatc ctacctgcac acgcgccgcc caccgcacct gcgcccgggc      4440
     cactcgagac aacacatgcc ccacgtgcgg ccctcttttc atcgaggtcg actcgtctcc      4500
     tgcgccaagt tacgtgggca aacagcaatg agcgtgagcg tgaccttaag catgacctgg      4560
     agtgggagga gctgatctca gaatacacca accgacttgc agcgggacct gatgcacccg      4620
     cccgccccac acggcctccg aaggatcgca acctgacaat gcggcaacgc cagggccgac      4680
     acgatgacga cccggacgat caagcaacgc gtgcacgggt gacccgcgca gcaaccacca      4740
     tctctaccgt ccccagcgat ccctaccacg acgtttcccc cccaggcagc tacgccatca      4800
     ccacccccac agcaggccgg gccctccccc gagaggccca tgtctatgaa cccagcggac      4860
     gctggctcgg catgctcacc tacacacgcc ttcaaacgct ctgggaaagc ttcaaccgga      4920
     ccaacaacaa ccggaccaag gccttcgagg aggcggtggc tgccctgctg caccgatacc      4980
     ggcgcgaccc ggggcaaacg gaccataaga cggcaccaca gcaccagacg tccctcccct      5040
     cggcaactgt ccgagccgtt gtgcgcagcc tgcgaaacac cggcaggggg agggtcaagg      5100
     aaatgtttgc ctcacccctg aaccacacga ccgatgccga tgaatactgg agccgggaag      5160
     ccgctgatgt ggtgttcggc gcccaacacg atgcctacag cactgcatgg acggggctcc      5220
     actatgcaca ccctcctgca aaccccgatg cctcacgaca ggccctcgta tgggccctcg      5280
     ccagtgccga gacagtcaac aactccccgg aacccacact gaccattcta gtcctcccaa      5340
     agtgcgcaac ttacccacac acacagtggc taacccaccc gctctgccgc cgactcgcca      5400
     cctggacgaa cggagaactg gactccccag gcacagctgg gatggagcct ggactcggca      5460
     ctgacgtgcc cctgcagaag caacgcggag ccatactagt tgccgttggc aacacagctg      5520
     ggctaaacgc cttcacgcag agctggaaag gccttcgctc ctcactggta gccggtcccc      5580
     acgcgcccgc aaccgtcgct gacacccacc tcgggtcagg tacgttaaac acgtcgtgtc      5640
     cccacatccc acgtcacacc tccaaacatg ccaagtacct cgcaactcac ctgaacattg      5700
     ccactgtggt cacgcctgac gaagctccag cgacaccgag gttgaatcgg acacaattcc      5760
     aacgtacact gccgctggcc cacaaccccg aggaaattgt atggaccgat ggctcggtat      5820
     ccaagacaac gactgaaaac ggtagagaac tacaagtggc tggggcttgt gcttggcata      5880
     aagaccgtgt tgtctacgta aacccaaatg gatttggctg cactaacact attacacgcg      5940
     ccgagctcgc tgcaattcgt gcagccctgg aagaattcgg aggtgaaact agtatgttcg      6000
     cgaagaaaac gctaaccatt gccagtgact cagctgcaag cttgtatcta attaaacggg      6060
     ctattgacga accacgtcgc ttacatctga gcaaacataa ggcacttttg agttcgatcg      6120
     ccgatttgct ccatgcacga gcgaagaggg acgcacacac cgttttcctc aaagtcgttt      6180
     ctcacacggg tctgcacggt aatgaagaag ccgataaagg tgcagcagac gtagctacaa      6240
     gcactaaacc ggctgacgtc tcggagctcg ctgacaataa cccccacgcc gcacactggt      6300
     ggccagcaac gacccggacg cgggaagacg gctctaccac cgtgcactac atctcggacc      6360
     tcaatcgagg cctcctgaaa acactagacc cttcctccca tggcggtcat tccaaacaca      6420
     cactctacac gaccaagtgg gcggagtccg ccccacacct ggacaccagg gccagcaccg      6480
     cctacatgac gcaccccggc gctgggcaca gcctccgacg cttcatccag aatgccaggc      6540
     agggaggcct catctgcccc gcccggcttg cgctgttcaa actacgtgcg agtgacacat      6600
     gtgcactctg cgccccgatt caccagcgcg ctggatcccc ccccgaacgg ggcaacgcag      6660
     gccaccttgc cggccactgt gcgcaccccc aacttgttgg ggcccgcatc gccaaacaca      6720
     atgccgccgt ccgtatgatc gcggaatgcc tgcaccatgg cgccaacggt ggcgggtaca      6780
     tgttgatgga cgcaagcagt gcagatgcac gccccgaata ctgtgcgggc acctgccccc      6840
     ccaaatggat gctgcgcaac aatatccccg aggccgaccg aaaaaggatg aggcctgaca      6900
     tcctgttcat cccatcccta ccacgctccg acgtgggggc tagtgggccc cgcggcctta      6960
     caaccgccgg ccgacggcaa cacaaagtct acctgataga agttggttac acatcggacc      7020
     tccaccacag cgaaaagtgt gaccagaaac aagcccagca cactcgccta gccgacgccc      7080
     tgcgggatgc aggctgggac gtagtatata aaaaggagca gattgttacg ctgggccacg      7140
     gcggcactgt gtcaaacacc ttggaacccc tccttcggtc gctgggtgcc accaccacat      7200
     cagcaaaatc ctgctgctcg cgcatacaca tgcacagtgt catcagcctg cgcaccacat      7260
     cccttctcta ctaccgcctt gagcgcgaaa tggggattgt gaactcacgc caagtcggcc      7320
     ccactggcgg cgccacggct gctggcccca gccctcgcga tccaggctaa ctttccacct      7380
     tttgacacgg tggggtgagc aaaactcact cctccttaag aaacgcggcc tccttcgtga      7440
     accgcgtaca tattattatt attatt                                           7466
//
ID   Copia2-I_CR repbase; DNA   ; CHL   ; 5509 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Internal portion of the Copia2_CR retrotransposon.
XX
KW   5-bp TSDs; Copia2-I_CR; Copia2-LTR_CR; LTR retrotransposon;
KW   COPIA superfamily; endonuclease; protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-5509
RA   Kapitonov V.V., Jurka J.;
RT   "Copia2_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 104-104 (2004).
XX
CC   [1] Consensus
XX
CC   Copia2-I_CR is an internal portion of the Copia2-CR LTR
CC   retrotransposon, whose LTR is deposited in Repbase as
CC   Copia2-LTR_CR. Copia2-I encodes a 1591 Copia2_CRp polyprotein
CC   (pos. 63-4835) composed of the C2HC zinc finger, protease,
CC   endonuclease, reverse transcriptase, RNase H. The PBS (pos. 1-14)
CC   is complementary to an internal portion of tRNA-Met.
XX
SQ   Sequence 5509 BP; 1047 A; 1626 C; 1945 G; 1047 A; 0 others;
     ggttatgagc cccgcgtggc cctaaaaccg cgcgctttta ggctatctag gtgttctcta        60
     atatgtcgga cacaagcggc aagccgcaga cgattctggc agaggacgcc acgaactttg       120
     tcagctggcg ccgcgacctg tcttatttcc tccagaccaa acgtctgcac ctatacctac       180
     aaactcctat ccctcctcag cgggcactct atgcgctaga agaggaccag caggcccttg       240
     ggcatctcgg gatgtcatgc tcagagggga tttgggacct gatttccggg gcccggacca       300
     ccgttgacgc tatcggcatc atcgagggag agtaccggcg cgcgtcggat ggcaagctgg       360
     ttgcgctgga tcgtgaccgc agcagttttg ccatgctcgt cggcgagcgg ctgccggcct       420
     acttccaacg cgcgcggcgg ctgcgggatg acatccgcgc tgccggcggc aactggccgg       480
     agtccgatat gcgcctgcgt ctgctgatgg gcctgcgctc ggagtatcac ccggcgaaat       540
     caacggcggt cggcatggct gaccgctcgc tgcttgcact gcagcggatg ctggaggatt       600
     gggagtcttt ggcgccccag cccggtggac tgggtgaggc gggctacgca ctgacggcca       660
     gaccctcggg tctcggcagc ggcggcagta gcagcaacgc agtaggtgtg gcggcacgcg       720
     ggctgccagc ggccggaccc tggggtcaca gccgcggcgg tggaagcgcg ggctatcaag       780
     gtggcagcag cagcggcggc agcaatgagc aatgctggta ctgcttcgtg caggggcacc       840
     agcgccgcaa ctgcaacgtg agggtactgg atgagaaggc gggcattttc cgggccaaca       900
     tccgcgtgcc gccaccgccg ggtaagggac agcctggcgg gggtggaagc gggggaagca       960
     aggggcctgg aggcgggaag gggcgaggcc gcggaggcaa ggggggcggc agcgggaagc      1020
     cgttcactgg ccgcggcaca gtgctggccg tgcaggatgg gggggagggg gctgccgagg      1080
     gtagcagtga cgatgacccc aactgcaact gcgccgacgc gtccggggac atgtttgggg      1140
     gcagtagctg cagcgtggcc aacgacggca cgcaccactg gggcgtgggg caggctcacg      1200
     acagtggaag cagcagcagc accgccggct acagccacgc ccacgcgggc ggcggcagta      1260
     gcagtagcag cgtcagcgcc gggctaggtt gcgccggtgg ctgtgagcgt gtcggctgct      1320
     gcggcgtcag cggcgacagc acgctgcacc tcccgaacag cggtggcagt agcagcgttg      1380
     tgcctggtag agctgacggc tgctcggcgg cgggagtccg catgccattg cttcccggct      1440
     acagccgcac tgacgacgat ggtgacggca gtagcaacag cagtagcaga tccggtggga      1500
     gtgccgcatg ctgcttcacg gggttccctg gtttgggatt ccgcaggctg ttcaagtccc      1560
     gctacagccg cgacagtcgc ggcagtagct gtagtagcag tagcagcgcc gagcctgcga      1620
     gtgccggcgg ctgcgatgtg gctgaggaca gtaatggagg tgcctgctac agccacacac      1680
     tgccacccaa caccagcagc agcagcagca gcagcagcag ccgtagctgc cgcactggct      1740
     tctgtgcccc tacggcggac ggcgccggcg atggcgccgc aaccacctat cagctgctgg      1800
     tggactcagg ggcatttcga cacatcacgg cgcaccggca cctgctatcc aactacacgc      1860
     cgtcacgcgt gaagatggta cggtggggag atgggcacat cggagcagtg cagggggagg      1920
     ggatgatgag catgctgtca ggcgggcagc tgctacatgt tcacaacgtc ctgcatgtgc      1980
     ctacgtcgga gctttcgctg ctgtcagtta ttgctctcac aagcaacggc agcaaggtgg      2040
     tgtttgaggg agacggcgtg caggtggtca gagggcgtcg cttgctactg caagggcgca      2100
     accgcaatgg gcagtacatc ctgtccaacc tgcgcctgtt atctacttca acggaggttc      2160
     ccattatggc gccggctact gccagcaccg ctgaaagcag tggcagtagc accagcaacg      2220
     gcaccagcac tgccgcacct gcgggtggcg gcggtgggaa tgggaggttc gccgcaccta      2280
     cgggtggcgg cgacaacagt agcggtgctg ccgcgcctac gggcggcggc gaaaccgaca      2340
     gcagtgctgc aacgcaggag gtcgccggta gtagcagcag tagcaggagt agcagtggcc      2400
     tcagtgcaca ggtgcaggcg gcgctgcgac ttcaccgccg gcttggccat ctgggcttta      2460
     gcagcattaa acggatggtg agccagggaa tggtcacagg ggcggatgta agcctcagcg      2520
     cagtacggga cgccgccgag ctggtgtgca gcaagtgcat ggaggctaaa gcggcatcag      2580
     cagcttttcc ccgcagcagc agcggcgcca caaccgtgcc gctgcagctc gcacactcgg      2640
     acgtgtgcgg cccatttcct caccaagggc gcggtggagc gcagtactat atcactctgc      2700
     tggatgatgc cactggctac ggcctagtgc ggattctgca gcaaaggggg caggcataca      2760
     cagcgctgca ggagatggtg gcggagatgg agtcgcttta ccccggcggc agcaggctgc      2820
     gcacgctgcg cagcgacaac ggcggcgagt acgtgtcttt gcagctagaa cagtggcttc      2880
     gctcgcgcgg cacggtgcac cagtactctg caccatacac gccgcagcaa aacggagcag      2940
     ctgagcgggt caaccgcacg ctgcaagacc gctgccgtgc gctgctactg gaggctgacc      3000
     tgcccaacgg tctctggccg gacgcagtgt cttacgccgc ctatatccgc aacctgtcgc      3060
     cgtcagcggg ccggaacgtg acgccgtacg aggcgtttac aggcaagaag cctgacgtct      3120
     ccagcctgcg gactttcggc tgccgcgtct ttgtgatggt gccggcggag caacgcgaca      3180
     agcttggcgc gcgtgctaac gtgggcacct accttggacc agagcgcaac acggcggcat      3240
     cacgtgtcaa ggtgggcaac ggaatggtgg tcagccggga cctcaaatgg gatgaggcca      3300
     tccggggtcc ggcgtctcgg cgggcgggaa cgcagttcgg ggacggcgtg ggagacagta      3360
     gcagcaacga tgctgctcac gctgcggcag cgccagcacc tggggtgcca gcgcaacaga      3420
     cccaaatggg cccacccccc cacccatcac cgcccagccg gcccgccacc cgcagccaac      3480
     accccaacct cctgccgcca atcaatcctg tcaccgctgc agcatctgcg gtggcggggg      3540
     gaggaagcag cagtagcacc gccacagctg cagcagcggc aacagagtca gatgatgagg      3600
     aggtgccgcc gctagcgcct atgtcggatg atgaggatta cgagccggcg ggctgcagca      3660
     gtgctacagc ggcagtagca gaaccgtttc cgggtgagcc gcagagctac gagcaggctc      3720
     agcgcgcgcg tgatgcagac aagtggttgg aggcgatgca ggaggagatg gcgtcgcagc      3780
     gcgagaacgg cacctgggtg gtagagccgc tgcctccggg cacgcgtgtg ctcgccaatc      3840
     ggtgggtttt taagctcaag cccggcgatg agactcagcc gccgcgctac aaggcgcgcc      3900
     tagtggccaa gggcttccag cagagggagg gtattgacta tgacgaggtc tttgctccca      3960
     ccacgtgctc agtgtccctg cggacgctgc tggcgctggc ggcggagcaa ggcctgctgc      4020
     tggaacagct agatgtcaag actgcgttcc taaatggaca gctggacgag gaactgtgga      4080
     tgcagctgcc gcagggcttc gaggaggaaa ccgccagcag tggaaacggc ggtgctggag      4140
     gagatggcac tgagatggcc agcaatggca gcggcggcag cagctgcagt gcccgagctg      4200
     cacaggagtg tgccggttgc agcaagaaca gctcaaccag cgtcagcggc aacgaaggtg      4260
     gtcgcggcgg cgagcccatc atggcctgcc gcctgcttaa atccatctac ggcctcaagc      4320
     aggcgccgcg ctgctggtac atcaagctct gcgagcagat gggcggactg ggattcacgc      4380
     cttctgccgc ggacgctgcg ctgtttgtgc ggcatgacgc agagggcccc gtttatgtgc      4440
     tggtgcatgt agacgacatg ctcattgcgg ccggcagcgc gcagcaaatg gcgaccgtga      4500
     aggccgccat caacgggtgc ttcaaggtgc gggagctggg ggaggctcgt gtgtatctag      4560
     gaatgcgcat aatccggcgg ccggacggca aggagatcaa gctgtcccag cgcgcgtaca      4620
     tcgaggacct gctgcagcgg catggcatgg tggatgccaa gccgcgcagc ctgccgctgc      4680
     cgccgggcac gcgagtgctg gcggcggcgc taaaggacct ggtgctgtcg gacagcaagc      4740
     agtacagcgc gctagtcgga gagatgaact atctggcaac caacacgcgg cctgacattg      4800
     cgtttgccct aagcctgcta cctgtcgggc acgcgtgaga tggggctgtg cttcaggggc      4860
     gagacagcgg ctgcaggcat tgccagtgga atgggaggtg gtcgcggcgg tggctctgac      4920
     ggctgcagct tcgtcggcta ctcagatgcg gactgggctg gcgaccccgt aacgcgccgc      4980
     tccaccacgg cctttgcgtt cctgtgcaac catgtggcga ttgcctggtg cagcaagcgt      5040
     cagaagacgg tggcggcgtc cactgtggaa gcggagtatc aggccggtgc ggccgcggcg      5100
     cgcgaggcgc tgtggctgcg taagctagct gctgacctgg acctggagga gggagcgatt      5160
     ccgatcaaca ttgacaacca gggcgcgctc agcgtggcgc gcaaccccgt cacgtcgtcg      5220
     cattccaagc acatcgacgt gcaccaccac ctactgcggg agcgggtggc gcgtggcgaa      5280
     gtggcagtgc gatactgccc cacggagctg atggtggcgg acattctaac caaggcactg      5340
     cccgccaaca agttctgctt ctgccgcgcg gcgatgggcg tggcataaaa gtagttgcat      5400
     attcacatcc catgccgaac agaaggggct gcatgcctag gtgatgaggc tgtgctatct      5460
     ttgcagtttg atagcaagtg tggctccggc agttcagccc gagggggag                  5509
//
ID   LTR1_CR     repbase; DNA   ; CHL   ; 491 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   LTR1_CR is a long terminal repeat of unknown LTR retrotransposon.
XX
KW   LTR Retrotransposon; Interspersed Repeat; 5-bp TSD; LTR1_CR; solo LTR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-491
RA   Kapitonov V.V., Jurka J.;
RT   "LTR1_CR, a long terminal repeat from the green algae genome.";
RL   Repbase Reports 4(5), 126-126 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors about 15 copies of LTR1_CR; they are 95%
CC   identical to the consensus sequence. LTR1_CR is a solo LTR.
CC   The LTR retrotransposon it was derived from is not known yet.
XX
SQ   Sequence 491 BP; 119 A; 131 C; 140 G; 119 A; 0 others;
     tgtgggcgga acacggaagt tctacgacac acaagtatat aaccctgcgg acggcgccct        60
     ggggcatcta gatgtgtctt ttaccgactg tcctactaca tttggtatcg agttcagggc       120
     ccaacgtgcg ttatctgcgg acaatgcgca cgcgaccaca taaggtcggg ggttcaaatc       180
     ctggtgacgt cggtcaaagt ccatcacttc ggctatgcga gagtcgtaaa ggcaccaaca       240
     aacagttggc tactggcgat gctcaggtag cgggtatacg cgacgtgggc ctcgtcaccc       300
     cactgccaca gaaacacaaa cggttgccaa agaagtactc tctacgctag cgtggtgact       360
     gcccgggacg tgcagtccag aagggggaga gtgtgggcgg aacacggaag ttctacgaca       420
     cacaagtata taaccctgcg gacggcgccc tggggcatct agatgtgtct tttaccgact       480
     gtcctactac a                                                            491
//
ID   TE1-2_CR    repbase; DNA   ; CHL   ; 664 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   TE1-2_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   Non-autonomous; TE1-2_CR; Transposable element.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-664
RA   Kapitonov V.V., Jurka J.;
RT   "TE1-2_CR, a family of unusual nonautonomous transposable elements in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 5(3), 67-67 (2005).
XX
CC   [1] Consensus
XX
CC   TE1-2_CR is a family of nonautonomous transposable elements. The
CC   consensus sequence is less than 5% divergent from
CC   TE1-2_CR copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily (see TE1-1_CR).
XX
SQ   Sequence 664 BP; 128 A; 215 C; 183 G; 128 A; 0 others;
     acaaggggtg tcagctttgt acagctggaa aatgggctga gcccccgtac gcttgggagc        60
     taataggcgt gtaacgcccc gtcagagcct ccatgccgct acgacgcgca ggcgcatcgg       120
     ctagggacac tcgggttggg gccgtgcggg atttcccgcg ccacgcatgc gtgccttgtc       180
     acgttcccaa acaccccaag catttctttc gcctcctgcc atactcaaca cctccccggc       240
     gccccacgct caaagggcta ggcgcggggc gggggcgacc tcggggcttc tcggcattct       300
     ggcgcgtcgg caggcatggc tcagcaagtc gctcaaaact ttcgatatac ttccccgctt       360
     tgcttgccgc caacatagtt tgccttatag actgcatatc agcgggcacc ggatgctttc       420
     ctcgcgacct cgcgaaagtc aattgtccat ggacgcgcga aggcacttct cgctccgccc       480
     gaattttccc tgccacctat ttacatgcaa taggcattaa caaatactaa tacgtagcag       540
     tcgcggtttg cgccagtatg ctatgttttg ccgacgcacg aacgaaccag ccacggacag       600
     gggtgttcct ggggggcttc gccccccccc tggaacgctt cgctgggggg gctcagccca       660
     aaaa                                                                    664
//
ID   RandI-3     repbase; DNA   ; CHL   ; 11237 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-3 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   AP endonuclease; RNaseH; RandI superfamily; RandI-3;
KW   non-LTR retrotransposon; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-11237
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-3, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 198-198 (2004).
XX
CC   [1] Consensus
XX
CC   RandI-3 is a family of RandI non-LTR retrotransposons.
CC   Approximately 20 copies of RandI-3 are present in the genome.
CC   They are ~1% divergent from the consensus sequence and are
CC   likely mobile. The RandI-3 elements are usually flanked by
CC   10-15-bp target site duplications. The consensus sequence
CC   encodes the 3671 RandI-3p protein (nucleotide pos. 98-11110)
CC   composed of the AP endonuclease (aa pos. 1030-1300), reverse
CC   transcriptase (aa pos. 1650-2000), and RNase H1 (aa pos.
CC   3170-3340) domains.
XX
SQ   Sequence 11237 BP; 2815 A; 4338 C; 2391 G; 2815 A; 0 others;
     aacgttctaa aactccctat tgcctctcca cactacgaga gcgccgacga gctcaacatt        60
     tgagcgggac gtgccgaacg cggggatctt ccccaaaatg gccacaatgc tggttcttat       120
     cacctatgtg atgctaatct tgggagtact cgtccggacg agccactggc cggaggaggt       180
     ccgacccttc catacccctg aagtgctaca agctctcgca ggccttttgg cccgatcttg       240
     gacgccgtct ctgacatcag ggggtccaga ggaagtggcg accacggcta tgcaccggat       300
     gccaccccaa aaatacgcgc cattttgcat ccccgcgacc ctcgtcgcga cgaatcccgc       360
     aatatgctct gcaggctcga ggctctccag tggaagctat ggatctcagc agatgaacgt       420
     gagaagcgca gcgcctacgc cgacgcaaca atcgcagcaa cccctccctg gaactcgcaa       480
     acagcggctt tgcaacgaga ccaatactac tttacctgtc agcctccgac ccccagcgcc       540
     tgacgtgcag aacttagact tgtcgcggga ccgtcgcaga ccagcgacca cctcgcctag       600
     ggctgcaaac tcctgcactt ccagaactct caaatcgccg acactacagc actacgtatc       660
     taccagtctc cagccaccag cgtccgacgg acaaaactca gacatgtcgc gaggaccagc       720
     gaccacttcg cctatggctg caaacccttt cagtcccaaa actctcaaat cgccagcctc       780
     acagcactac agcacagctg aaagaccacc ggatgacacg ccccacgacc ccggccccgg       840
     cagctcggcc cggggcccgc gcgcccccgc tgcactcctg tgccataccc gcaccgccag       900
     ccccgccctc cagctgtggt gtcaaactat gggaccgtac cccatagtcc agctccagat       960
     gcacaacgac actgaccccc tcattgccac cgtgtcctac atatcagcac atatcaccag      1020
     tgcgctatgc tggacagctg taggcacctt ccacggatcc tgtgccctcc ttcgccacac      1080
     catagcctcc ttgcgtaccc tcctcactca cactgccgcc tacatgacca catgcaccgg      1140
     cactctgatc gcccacagct ggcgcactgc agcaagcata accctgtggc cacccgccct      1200
     aaccctggtc gcagccagcg cagcacggct ggcctggtct gcccgtacca tgctctccca      1260
     cccgtcagct ggcaacctaa ctaccctaac cttcaccctt ctcgccaccc taacgctatc      1320
     ccaaccactc ctcctcctca tcagcacaca ccagcacatt agcaccaccc tcacgctcct      1380
     caccacaacc gccgctatct acgccaccct caggaaaacc cacggcgccc cgcttatcct      1440
     gctgggccta cctgtatacg ccacgtgccg cgccgtagct gttaaaccgg cctacaccat      1500
     gcgtacactg cttaccattc tcctcctgct tacgaacatt caagccacgg ctgaagcacc      1560
     cgaactaaca cctgcagctg ccccactcgc catgcaactc ctcacccgca tcccgggttc      1620
     accaaccctc aacaccggag tcgtggggct cacctacctc ttatcgcaaa cccacataca      1680
     cccccagccc gcgtgcctcg ctctcacaac caaccttgcc acctatcgct acctgatgga      1740
     tgtcacaacc ccctggtcac acacactcgg cagcccgata ccccctccca tacaactcag      1800
     aggaggcaac ccaattgaac acacaccggc aaccaaccga gtggctgctg ctactgagtc      1860
     cgggcgcaaa cctgaacgaa tccaatggcc cagacaaata caacacacct tcttccggga      1920
     gcaacaacaa ctcaacttct gcactgtaca cgccataaac aatatgctgg gcaaaccgtg      1980
     gttactggcc acagatgtgc ttgccttctg ccaggtctca catactgcaa tggccgacac      2040
     gcctgctcta tacaccttat ggggccacca cttccgatac catggactct tccatgaagc      2100
     cgctatcaac cactacctgc gacaccggcc cccagccgtg gaccacacgg gggctcgact      2160
     actcctgcgc acagtcgcca aaacactaac cccgggacac acgcaagacc atatcataag      2220
     cctcctcccc gactgctcca agggccttgg tcttatggtg cacgacgggc gccatgcgta      2280
     tgccatccgc aaagagaatg acacctggta cctcgtcgac tcactggcac acattgggcg      2340
     caagcctatg acgcaggaac tctgggctgc caccaagggg gatctcttct gcctccaccc      2400
     cctacacccg gacatgcccc ctgaccccct aacatacccc accatcccgg gcctcccgga      2460
     acccccacca cccccgacgc ccaccaccca acccagaccc aggaaaggga ctgtccaact      2520
     aaccctcaac accacaatga cccgcacctt gaaccgtgca ccactgaacc ccaacccgga      2580
     aaactccacg accagcaaca gagcgcagac ccgcccccag acccaaacca ccctcgccaa      2640
     cttagtggca cgatcccaaa cacacgccga gccccaaggc acccaactca caccgccaga      2700
     agacccccag gagccgcccc cacgcacgca cgcacccaca catgagcacg gccgcccccc      2760
     cactccccca agtgcagccc gccccacaag gcgcttgcgc cgcaacgacc aaatcagccc      2820
     ccacagcccc accagacacc gtacccaaca ggatgccacg acagaaaacc aacaacccca      2880
     ggccccaccg cccgccaacg acccagtccc cacgccacaa ccccgcccaa catgggccca      2940
     agtcctcaca aacaatgcct ccgcagttgg taccgcaacg ctccacgtgc taacccgcct      3000
     atcacccgcc ccacgacacc gacccgacac ccccaccagt gcggcccgcc ccacacaacg      3060
     cccgcgccag gaattaccag gcagccccac aacccacact gcaaccgctc ccccggaccc      3120
     accgccaacc aaccccaccg caaccccgcc cgtaacggaa caggcagctg aacccgccgc      3180
     cagctggctc catgttgtca cacacaatgt gcgcgggctg agcaccaacc tcctgtccac      3240
     cgtgtgccac ctgcgggaat gggacgcaga tattgtgatc ctgaccgaaa ccaagctggg      3300
     cccacgcacg cgctggctaa aggacaccct aagacacgaa aagctatcat accgcacttt      3360
     cacgtccaca aaaccaggga ctgcacagta taaacgccgc tccgccagcg tactcatggc      3420
     catctccaaa cgctaccact cggggagcaa cattcacaca gcaacaatcc caccacacct      3480
     cctaggccac ctggcccact gcactatccg cacaccacac agcatccccc tgcatatact      3540
     aggcgtatac tgccccgaag acatgcccac acgccgccgc atatacacct actgcacctc      3600
     cacattgaaa gcagcggccg ccgcaggcga gcacgtccta atcggtggcg acttcaacgc      3660
     cgtactgacc gcagcagacc ggacagggcc ccttgatgac gctgacagac accatgcacg      3720
     gtttgtctca tcccaccggc tgcaccgcat caccgagccg aacggcacca ccagtatgac      3780
     gtactaccaa acacgtgacg gtcaccctca agccatcagc cgcatcgatg atatcctcat      3840
     ctgccagcac acgtcgaacg ccctggtagc tgccgcaacg gagccaggcg gaaatacgcc      3900
     aacactcaaa gtccaaccca gcggcgggct attcgaccat tcctcagtcc acatccacct      3960
     tcccactttt cccatgcgcc tatggactgc acccacgggc aaccgcacgg gcaataccac      4020
     acaaccccca acggggccct ggccacaagt ggtgctacct atctccacct ccaccctgga      4080
     ggctgtaaga acaaaaattg aacacacact tgcctcaccc atagccaacc tcgctgctgc      4140
     tctccagccg gcctccaccg ctatccgaga ccacctcgac cgctacacta ccggagccac      4200
     caatgccact gagcttgaca cccaactaaa aggaggtccc accgtccaag ccccgaacct      4260
     cgacgcactg gcaggacaac tccatgacat actcaaagac ggcttgaaca tcctcgtgga      4320
     tatgtgcccc aagaaaccgc cgcggaccgg cgccttcgcc ccccggcgga ttagcaagaa      4380
     gatacgccgg gcacacgagg aactacggca actccgagcg gccatcgcag acaacgacac      4440
     cctacacaca cccggaaatg ccgccacggg cgcgccaacc acgccacaac ccagcccctg      4500
     tcctccgaca gagggcgaac ccacaacccc aacccccacc cgcggccccc gaccgccacc      4560
     gcccaaccaa accgtatccg accttatcaa caaaatcaaa catgttggaa gcgcactacg      4620
     ccaaaccctc aaaaagctca cacaatcaga ggtacaaaaa tccagagccc gcttccaaca      4680
     caaactagcc acgagagcta aacaagcaca caaagacatc ttctccaatc aagaacaggc      4740
     acgtggtatc cccgccgtcc tacaccccca caccaaagca cactgtacgg acaaagcatc      4800
     catcctggag gccatccata catatttcca ggaccaaggg gccaccatca ccgggccgcg      4860
     caccgggaac tataaacccg aagacagaca tccgaacacc aggtaccctt ttgaccccag      4920
     caacagaacc gcacccgaca ctttcaaact gcacagtaca tgcagcccga ctagccacgc      4980
     actgctacca agcatctccg acagcgccaa ttttgacaca tgcatagacc acctaagcag      5040
     aaacaaatcc ccgggacccg acggcatccc aaacgagcta ctacgcgcct taccgacacc      5100
     cctgcgcacg gcactccaca acctacttat cctaatgtgg gtcagggccc acacacctgc      5160
     ctcgtggact gccagcgaga ctgtcctgct ccccaaacct ggagaccccc ttctgcttaa      5220
     gaactaccgc cctattgccc aagccaacac cacgtataag ctctggacta gtctcatcac      5280
     ggtggccatc tctgacatat cacacgacct ggacctgttc agtgaaactc aagaaggctt      5340
     cctacgctac cgtaacacgg aacgtcagac cttaaacctc gttcacgccc tagaagacgc      5400
     cggcctgacc aaccaggata tctatgttat gtacgcagac ttctccagcg ccttcaacac      5460
     catatcacat gaccgcctac tggaaattat gtgggatctg gggatgcccc atgacttgct      5520
     acgcgtcgta caaaaccttt acgcaaatgc ccgtacttac atacgcactg aacacggcct      5580
     tacctccccg gtacacattg aacgaggcac agtccagggc gacacactct cccccgtact      5640
     ctttctgatg tttatcgaac cgcttatatg gtggctccat gtaggaggcc gcggctactc      5700
     ctacggttgc ttaccaaacc acctcaacaa caggttccac tgctcctcag ccgcctacac      5760
     cgacgacctg gcggtgctta caaacacctt gagcgaccta cgcattcaat gcgacaaaat      5820
     ccaccgctac tcggcatggg cgggcctcca ggtgaaccac gccaaatgcc gagtcacggg      5880
     aatcctgcac cgaagagccc agcaggacaa aggcctgaac ggtcccacct gcaaccgtac      5940
     cctcaaatca atgctcgaaa acaaaatcca cattggcgac aaacctgtgc cttacctccc      6000
     cgcaaccgaa cccttcaaat acctgggagt acagataacc atgaacttgc actggggacc      6060
     ccagtttgct tacctatgtg atgccatcaa agaaaaaagt gccaacctgc aaacgtctct      6120
     cgcgtcacca gaacaatgcc tgcgaattat aaaatcctgc atacagtcta tggcagcata      6180
     cagctttgcg gttatgccgt acgcagagaa cgacatccgc accctcgacg ccatgattgc      6240
     gcggctggca aagaagtgtt accgcctcac ccctgggttc ccgacacgtg ccacacttgc      6300
     ccctgcggac atgtcaggcc ttggggttgg ctccctcctg cccttatatg cccaaaaagc      6360
     cacacgggct ttgacccttg ccctgaacga ccccggcaga ctaggcatgg tcacgcatgc      6420
     cctgctggaa ctacaaagcc gcatcgccgg cacggcagcc atacacaaac tacgtcggga      6480
     aagccacttc tacaccacac tcaaacaact cagtatcatg cgagaatacg acatcaccct      6540
     gtgggaccac ggagcgccgt atgccggccc catcaacacc atcctccaag cagtgaaccg      6600
     taacccccga cccatcccac accacctcgt acatacgctg gcgcaggccg gcctggacct      6660
     cagagccctg ataagcacgg aacgcacgaa agaaggccta acctgcctga ttccctccga      6720
     ctccctgttc ctccgcctcc cccgtaacca atgcaaacgt caacaccgta tcgcgctgaa      6780
     caggctgagc ctatgcctta gtgccgaagg tgccccaacc cgcgcggctc catatgacca      6840
     gccggagacc tacaactgcc acctgcccct ccctcagcaa taccgtgccc tcccggcgac      6900
     acccgccttc gcggccctgc tcccgcaatc cgccacagcc accggcgccc cccagaccac      6960
     tctcatggct caccgtcaac atatgaccac cctacacccc gagcccaact cgacccaacc      7020
     acacgcgccc accgctttta acgcaaccgc accaccccgg gccgcccagc cccgaggcgt      7080
     gcccacgcgc caagctgccc tcacccgcca ccttcgcccc gttgagactg catgcacact      7140
     ggcgaccata cccgcaccac cgacgcaggc aggcacgccc gacccgaacc aaaccgccac      7200
     acccatcgcc ctagcccagg gtacagcacc caccctgccc cccgccgaca ctccagccac      7260
     gcagcctcaa actcaaacca acaccaacaa acgcaagcgg attaatctgc aggttaagaa      7320
     agtgaaggga ccgtccgcct ctaaacgcct ggaacggaga atcgaagcgg agccacgaca      7380
     cgacccactg ggcacgcgag gacaacgcga ccacacaggg agacacggct ttgtcttgga      7440
     ccatggcgaa cccgtggcag gagacaccgt acccgctgac tttgtcatgt gggccccgcg      7500
     cttctactcc atgctgcaaa aagacatgag cgggaaaaca cacatacccc gccttggcat      7560
     cccacctggg aaacagaagt tcccaactac gctaccgcgc ccacgctaca ctcgacaaat      7620
     acccacacac ctgaccaccc cgtatttcct aaacgacggg gaaccacaca acccagtcca      7680
     aacctacctt cgcgaccaca atgcaacaaa ggccccactg tgcgcgtatg acacgcccgc      7740
     ccgatgggca caggccggag acttcattat tgaacctgag cccccacgct ggcccaccat      7800
     aaccggggcc gatcccgcta accctgacga cccccgtgaa gccgaccccg accccaatgg      7860
     catgtcccgc aaagcttata tggcagaacg tgcactcctg agacaacgca cacaacacca      7920
     agacggacgc ccacgcctga tcacacggtg gatgggcata cgcgcgcaag taatgactgg      7980
     cggcctccaa tggcccaaga ataccagcga cgccacacgc gcagccagcc agctgatctt      8040
     ctccctctac tatgacctgg aatccgtatc acacgtccac gctggcccaa tccacaaact      8100
     gattgctgcg ccggcccgca acgaacgccc tcaaaccgcc ctatactatg aagtggcctg      8160
     gaagccgacc accattgtgc gcggagccgc tgcggcctat acgatcatga aatacacggg      8220
     aacaccacac gctcaccttg cctacgggca gagctgcagc cggtacttcg tacacatgca      8280
     ctggaacgtc actagcgagc ccgctagcaa atgccctaca ctccagggat ggcgagccgc      8340
     gcacgctgcc cacctccaac gactatccaa accccctagc gagcctacgc cccccccacc      8400
     ccgcgactca cacctgtcac cagcccagcg acagggccgg tggaccccac cagacgtgga      8460
     aggagcggcg cgccgacgca ccaccagaca gaacactcaa atcaacacca aaccgtgcaa      8520
     cccgtaccac gacatctacc ccacgggcgc ctacaccata cagattacgg acacatacac      8580
     agatgcacaa acccttgcac atatacacgg ccctgacgga cgccacattt ccagcatcac      8640
     catggggacc ctacacaccc tccacacccg ctacaaacac gccctggcca gtaacccaac      8700
     cgaaaccgca tctctccgtt cccccggggg tttccccgaa gatgttgcca aattactcat      8760
     ccgcacccgt gttgatgaaa aaggcaaacc atgcaaaaca gcgccggccc tcgaacgctc      8820
     cctgccgacg tgcctaaaaa caaccctact cgacgccttg gctgcggccc accccgacga      8880
     gaccaacccg gccctcatgg agcgcttcgc ctccccactc aactgctcca accgtgtatg      8940
     ccaatactgg agtgcccaac cggccgatgc cctcttcggg gccacaacgg acgtcctgtc      9000
     tgcccccttc accggcctct ccatcgccca ccccggcccc aaccccgccg cgtataccaa      9060
     agctctggca tgggccgtgg ccaccacgga actgctcgaa gggcagatgg atccggccat      9120
     caccctcatg gtcatcccgc acaaccacaa gagcccccat acccgcctct tcagtagccc      9180
     tcatgtcaca cacatagcgt acctcccgcc agacacaccc gcaaccaacc tagatgaggg      9240
     gctaggcgac cttagcccgg ccatcaccct acgacacggg ttagacctcc tactcgtagc      9300
     caacacaaca ggggtgcagg ccttcacggc ccgcaacaac cttgccaacc tccaagccgc      9360
     ccttacagac atcggggccc aaccgccacg ccccacccgc accacagctg ctgtagcgcg      9420
     atggccgcgc cgaatcaccc tccccagaga ccgccaccaa cccacctcac ggccatacag      9480
     ccaccgagcc caaacccggg cacgacaggc aacacaccgc accccgccaa cacccccggc      9540
     cccgcccacc tgcacagtct ccccgcccat ccaagcagaa ctgaacgccc tccgggactg      9600
     cttcccggcc atctcccggc cgctctatga cgcggccact gtcatctgga cggacgggtc      9660
     gtgcatcaaa atcgcagtag gagacgacgg tgccgaaatg aaccagcttg gcgcctgcgc      9720
     ctggacagcg acaacgggcg aaccactcta cgtcgaacca ggcggcctga acagcaccaa      9780
     taccattcag cgcgcagaac tatccgccat cctggctgcg ctaagacact accgcccccg      9840
     cgcgcaactc ctggggctga ctaagctagt gattgccagt gactcgctgg tctcactgta      9900
     ccttatacgc agagcaatta gcgacccaat gaaactgacg ctgtccaaac acaaaaacct      9960
     actcagcgac attgtcaagg aacttaacga gtgtgccgac gaactcctcc ctgtcgtatt     10020
     cctaaaggta cgctcacaca caggcctggc aggaaacgat gaggccgaca aaggcgcggc     10080
     cctggtagcc cagcgtgacg cgggcgcaat gagccaagcg gtgcacctgc cacctgacga     10140
     gccctgggct aacatatggt ggcccaaacg gaactccgac aacttttaca tcagcgacct     10200
     gaacagggga gtcctgtcct cactaccccc gcgggcacag tatggattca cagacagcac     10260
     aaccgtcctc gacaattggg ccgccgcagc agatggcgcg tgccctcaat caagcaacct     10320
     aaccctggcc agccccgccc gccacccctg gctggtaaaa caaatcctat atgccagata     10380
     cggctaccta ttcaatgcca ccctcaaacg ccgttatgga ctgggcggaa acgggttgtg     10440
     ccccctttgc gaggcacccg actcaggagg gcatatcctt ggagggtgct ctcagcggca     10500
     gatgaaaggc gcatacatca accgccacaa catagctgta cagcgagtgg ctaaatgcat     10560
     ctccaaagga agctatggcg ggggctacat ggtaatggac gcgggcccac ttgcggacct     10620
     gcccgagtat gcatccggcc aaagaccccc cgcctggctt ttccgtaatg gcacaccccc     10680
     agaggttata gccaggctcc ggccagacat tctcttcatc cccgccctcg acactacaac     10740
     gacacaacgc gaagactatc ggccgccccg caaccgcagc cgcacaccaa tctatatcct     10800
     tgaaatagga tacagctctg actcccaaca cctacacaaa cgagaagaga agtcccaaca     10860
     acaccaagaa ctcaaacaac tcctagaaga agctggatgg accgtccact actcacccgc     10920
     cgagtgcatc gccctaggcg tcactggtac catacccgca aacctggtcc cactcctgac     10980
     caccctaggc gtgtccccca aggcggccaa aacctgcgga cacaagctcc accaccatgc     11040
     cgtcaatagt gctggaggca taattaaagc ccgcaggatc atggaatacg ggcacacgag     11100
     gaccccaggg tgatgtcccc aaccggcccc ccttgcgtgg tgaggcggca gggtagggga     11160
     tgggccccta cactgacccg ccttgccccg ataatccacg ccaggcccta cgggccggcg     11220
     tttcgattat tattatt                                                    11237
//
ID   DNA-1-7_CR  repbase; DNA   ; CHL   ; 710 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   DNA-1-7_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   7-bp TSD; DNA transposon; DNA-1-7_CR; unclassified superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-710
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-1-7_CR, a family of nonautonomous DNA transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 30-30 (2004).
XX
CC   [1] Consensus
XX
CC   Several hundred copies of DNA-1-7_CR are present in the C. reinhardtii
CC   genome. They are ~99% identical to the consensus sequence.
CC   DNA-1-7_CR is characterized by 11-bp TIRs and 7-bp TSDs.
CC   The genome harbors several young families of nonautonomous transposons
CC   related to DNA-1-7_CR, DNA-2-7_CR, DNA-3-7_CR, and DNA-4-7_CR.
XX
SQ   Sequence 710 BP; 156 A; 232 C; 173 G; 156 A; 0 others;
     cagggggggg ggtaggaaac aaagtgccag accccatgcc ccgaaatccc ccgggacccc        60
     ccttgagggg acgaccgacc ccccgacgga caaaaccttg ttgttcaggg gttaaaaccc       120
     ctccatttaa taccaaagtg gtgtcaatcg actcctcttg acgagcacta tcactccgtg       180
     tcatcagcgg tcctgttctg agacttcggt caccggcggg atcctatcca tggaaatccc       240
     ctcgacccag accaccccgc gctcaactct ctgccgcgtg acgaatggac aatgtgcatc       300
     ggcagccttg ttagacgtga actcgtgcgc accagcgctt cagagcccag ctgtgtcagt       360
     gcgcatgtgt tgaatgtgga gacatgtccc gacatgtcca cgcccggacg cgcaacttag       420
     ccctcccacg ctttgtttgt gcttattacg tcataacgtg cacatatgag cctcgtactg       480
     ctgcgtttgg cccctagttc tgcttgtggg gcgcttcccg aaatccgcca ggatgggctc       540
     ccgaaacccg acggaccccc agggacgagg accgaccccc caactttggc ggcccagaac       600
     ttcctcacca gacaccccct taaaaaacta aaagtacgtg cataatgctc tcctaaagct       660
     ctgtaatttt gagcatgggg taagaatctg agctttctac cccccccctg                  710
//
ID   Gypsy-2-I_CR repbase; DNA   ; CHL   ; 2974 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Gypsy-2-I_CR is an internal portion of Gypsy-2_CR LTR retrotransposon
DE   - a consensus.
XX
KW   4-bp TSDs; Gypsy; Gypsy superfamily; Gypsy-2-I_CR; Gypsy-2-LTR_CR; gag;
KW   nonautonomous LTR retrotransposon; protease.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-2974
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-2_CR, a family of gypsy LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 37-37 (2004).
XX
CC   [1] Consensus
XX
CC   The internal sequence encodes gag and protease. There are only
CC   a few copies of Gypsy-2_CR present in the genome. They are
CC   over 95% identical to each other. The internal sequence is
CC   incomplete at its 3' end.
XX
SQ   Sequence 2974 BP; 735 A; 798 C; 789 G; 735 A; 0 others;
     tggggggagt tgcgggaata gtcctgagaa actctattgt cccctaccca ttttcttcac        60
     tatctgaaca aaaaaaaatg gcgaatcaag tagactcgga cagtgaatcg tccggttctg       120
     taggctctac ccgtgccacc accatttcac cgtcctctct cttcgcaatt ccgctcttca       180
     ccccctcctc tgaggacccg agcaactgga tagacaccat cgaacgtatg gggcgtgtgt       240
     ttggatggga tgatacgtta aagctattta tagcgaagtg ccgtcttagt catgatgccc       300
     gcatctggga ctcaggcatg gaaactcagg gactcaggca tggaaacaaa catggaaaca       360
     aacacgtggg atgcgttctg tcgggcgttt cttgcccgtt ttgcagtaaa agagacaact       420
     ctttacgccc aactggcggc atgccgccag aaagcaaatg agtctgttcg tgagtactcg       480
     gataggttcc gtcacctact tgcccggttg cgcattaagc ccgacacaat acaaatgtat       540
     aactacctga ggggtttaca ttccagcata tacagccagg tgtatctcat gcgcccttcc       600
     agtctcgaaa cggccattga ggatgctatt tacgctagcg aggtagaaga gtccgcacga       660
     aacccaaaca atttctcaca acagattcca ttacccatat cccgcacgga ctaccgtcca       720
     gcagaccagc ggcctcgccc atcaaacttc aacctaagcc gcagggatga aaagttccgt       780
     tcacaagagg aacggtttaa taaccggtca actaggcccc tgccgccgcc atctgctagc       840
     agggtttcac aggatctgga gaaagacatt gaaagcatac aaaataagct ggcaaacctg       900
     accctagcgt tgagacagca gggggaggtg gccacataca tgcatgatag gtgtgaatcc       960
     gaaggggatg atggttggga ggatgcggaa tgttattact ctcatgggtg tggctatgac      1020
     agtgatgatt gggatgactg cgatgacggt gatcctgagt tatatgcacg tgagcgtgct      1080
     ttgtattcta ctatctaaac gagtgagtga ttttgagccc atcaggctgc ccaacaaacg      1140
     tgtgcctgtt gaacctacac agaccctgcc catggagatc aatgaccggc ctgcaacccg      1200
     tcggttcagt gctgcccgta ccgctggagg tgcttttggc tcgcccacac ccctgaaaga      1260
     gactcccccg cctgacacac gggccacaga ttctccccag cctgatacag ctacggcctt      1320
     tcgtgtgacc aacacggcaa cacctgcgcg acgggaacgg actgacaagg gtttaggagc      1380
     gggcggagga agggcaacca cagggtaccg tgatattggt cgtgcaccca gagggccggg      1440
     gggtgctgct acacgcgtgg accccattcc attcgatgcg tccgaagatg agaccactca      1500
     gcgcattgtg gctgacgtgg tatctaaaat aaacaagtac tcaatccctt tgggagccgc      1560
     agtccgggta aatccggtgc aaatttatag caaggttggg gggaaattga tgggtgtcgc      1620
     acgtatggtg ggcacacgcc caagggacga acccgccagc agggatgcta atctatatga      1680
     aagccaccga tgtaaggatg acgtgcttcg ccccctttct gatttcgatg tagggtggcc      1740
     tctgcctgtt agtgtgccga ctttccacga cgcggagccc gcctccaagg caccaacaca      1800
     cacaaccaga ggggcccgtg tccctgggct tgcccgcgtg acgtctggct attcgccacc      1860
     gtccgccccc acctatcaac aaacaaacac attgccctgc tacaatctgg atactcgtcc      1920
     ccagaagttt tcggtttgca ggggctatgt ccgcctgacc aacgccaggg gagagaagga      1980
     agtaatccgt gcggtcattg acacgggcgc ctcgtacagt gttgtacctg tgtacatttt      2040
     gcggcgactg gacctcatgc cgtatctagc tgagtcacgg gcaatgttcc tgaatgcgga      2100
     tggacttaag aagaaagcca cagggcaggt acgaggcatg caagttagtc tagggggtga      2160
     tttgacgtac accatggaca tgtatgtgtc ccaagctcaa aactacgaat tgcttttggg      2220
     aatggatttc ttataccctc tcaaggcctc cattgatttt gaggggcaag tactggaatt      2280
     cactaatgac tcaaaccagc gcagcaccat acctattaca tgtgttgtgg aggaagccgc      2340
     ggcgccacgc accacttccc ttagggagga atgccctgat ggagtgcccg agatctacat      2400
     gctggatggt gattcccctg caaccaaggc actcgtggcg cctgatgaaa ccgctggtgt      2460
     aatcagtcct gcacgcaggc attctcgcat tatttccttc agggctagaa aacggactgt      2520
     cccagcagat catatgcgca tgcggcaggt tttccgttgt gccaaaccca ttgtttccct      2580
     ggctccgtgt gggccctgtt ttcatagcaa aatagagaac tcaacaggta atggaagtta      2640
     cccatattta ccgcaccggc aacgcagccg tcaggtgaca tggttatgcc ctcagcatcc      2700
     ctctccaaag ggatggtgtg gcccagacaa gggcccggta tggactgcca gtccccccgt      2760
     gacattgacg taggcccggt acaggccctg acaatggtgc atattggagc cgtaggggtt      2820
     cccctaagat gaagcgtatg cacgcacgta ttaccactca aaataaaacc taaaaaatca      2880
     caaacaaacg gagtatagtg ttaggagcag gccgtggcat ccacgtgcag ggttggacgg      2940
     ggacgcccaa ctgtaggccc ggtaatgcta cagc                                  2974
//
ID   CRTOC1      repbase; DNA   ; CHL   ; 5662 BP.
XX
AC   X56231;
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   C. reinhardtii transposon.
XX
KW   CRTOC1; transposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-5662
RA   Day A.;
RT   "Direct Submission.";
RL   Repbase Update (1990)Day A., Genetics Laboratory, Biochemistry
RL   Department, University of Oxford, South Parks Road, Oxford OX1 3QU,
RL   UK..
XX
RN   [2]
RP   1-5662
RA   Day A., Rochaix D.J.;
RT   "A transposon with an unusual LTR arrangement from Chlamydomonas
RT   reinhardtii contains an internal tandem array of 76 bp repeats.";
RL   Nucleic Acids Res 19, 1259-1266 (1991).
XX
DR   Genbank; X56231; Positions       1    5662.
XX
SQ   Sequence 5662 BP; 1015 A; 1685 C; 1655 G; 1015 A; 0 others;
     gcgctgactt atcgcagcgc agtggagata agtctagtta ttgcgacgta actgccgtgt        60
     tgcgttagag tcacgcacgg cgcaggacgc tcgggtacgt gcctgtgcat ggggccgaac       120
     cgagctgggt cttgtacgcg tcaggagcac acggcgcctt atctgccgtt gtgcttctgt       180
     actgtatttc ggatcgtccc tctgccggga cggtgacctc agtgtgtcgc acttaaacgt       240
     tccctacatt tctggacttt ctttgcaatc ctatacctgg ttctaactat acttgaccat       300
     gtatggaccg aataagcgtt taatatatac tcagacggag ttgcagcgtt ttgttgcgcg       360
     atcctgctca atggaacccc ttagcttgat cacgctcgct ctctgatcgt aagggaatgc       420
     ccttcgaagc ttctctggcg ctttgaacca cgctttggtt cgggggccgc attcgggagc       480
     aaatcggagc agagcggagc tttcaagcgg agcaaaggcg cgcgaagcgt tgcggacaag       540
     gcgttcggca agtcactgaa agcaaaaggg catgcacagc tgtgcgggcg ggctacttgc       600
     ttgccatgcg cggtcctgct tgccgtgcct tcgtgtctac ccgtcgcttt acagttcaca       660
     gctttgtgca atacctttcc acatcttcca ttgtgccacc cccacctccc caagaccctc       720
     aggacttttg gcgcggtact tctcctgtct gcctatccag gccgcagggc ccgcgtgccc       780
     ttggggaagg ggcgtgtgtg ccgttgggat ccggcctgtg cgccgcaagc aacgggcttt       840
     gcgcccttgc cttatggaca atggacggca tacgtgccct tatgatacgg cctgtgtgcc       900
     gcaagcaatg ggctccgcgc ccttgcttta tggacaatgg acggcatacg tgcccttatg       960
     atacggcctg tgcgccgcaa gcaacgggct ccgcgccctt gctttatgga caatggacgg      1020
     catacgtgcc cttatgatac ggcctgtgtg ccgcaagcaa cgggctccgc gcccttgctt      1080
     tatggacaat ggacggcata cgtgccccta tgatacggcc tgtgcgccgc tagcaacggg      1140
     ctccgcgccc ttgctttatg gacaatggac ggcatacgtg cccttatgat acggcctgtg      1200
     cgccgcaagc aatgggctcc gtgcccttgc tttatggaca atggacggca tacgtgcccc      1260
     tatgatacgg cctgtgcgcc gcaagcaacg ggctccgcgc cctggcttca tggacaattt      1320
     acggcgtacg tgccctcatg atacagcctg tgcgccgcag gcaacgggct ccgcgccctt      1380
     gctccatgga cacttcacgg cgtacgtgcc ctcatgatac ggcctgtgtg ccgcaggcaa      1440
     cgggctccgc gcccttgctt catggacaat gcgccgcgta cgtgttctta tgatacggcc      1500
     tgtgcgccgc aagcaacggg ctccgcaccc ttgttttatg gacaattcac ggcatacgtg      1560
     cccgtatgat gtgacctgtg tgccgcaagc aacggcttcg cacccttgct tttgggtaat      1620
     agatggcata cgtgccctta tgatacgacc tgtgtgccgc aagcaacggg ctccacactc      1680
     ttgcgttgtg gattatagac ggcattgaaa tgcttacgtg ccttcgttgt acatgccttt      1740
     gcgttgtgga caatgtgtgg tctgagcgcc acgttcggat acggcgtgtg tgccgccagc      1800
     aacaggcttt gcgcctcgca tcatgtgtct tgcgatatgg cctgtgtgcc gcatgcaatt      1860
     atgctgcctg ccctgtcgtt atggacgctt cgacttgttg cgtgccctgc tgcgtgccct      1920
     gtcgcaatac gccttgagtg taccgtgcac ggcaagcctg cgcctcgcta ttgcttcgtg      1980
     ttgacaacgg agcgggctta cgtgatcatg cgtcaccctg tacgtcttga ggtccgcacg      2040
     cacatcatac tatcacgcgg caccaccctt gtagtttggc tgacgcaccc caagccaacc      2100
     tatatgcatt cgatgtgtgc actaggccca agtgccgaat ttgtttttcc ggatatttcg      2160
     ccctcagtga gcgatgtgga gttttgtgca gttcggccag catgctatgc ccagccaata      2220
     acaataccgc atgacgcata actataccgc atgacgcata aacatgcctt cgtgccctgc      2280
     accaggcatc ggacgctgtg tcacgcagtg agcccgaccc tgcgcaacca acattttgtt      2340
     gcgagatacg gtcggagctg ggattacagc ctgcctggtg ggtttggatg gcgcccgtgt      2400
     gttgggctgg gctgttgctg ctcgcggtgg ggcccaccac caagtcacgg cacccatccg      2460
     ccctcccctc ttgttggccc acccgcctgt acacatgcca gtcacccgct cgccatcctg      2520
     tgaaagcggg tagccgactt ggcaagcgct tttcctgaca cttggcgcag gtttgagtgg      2580
     gataccagaa tggtctgaat gtagttgttg gataaccagt acactgcggt gtgtagctgg      2640
     ttagcgggag tgccgtgcat gaaacacgct actcgacccg ccatgcccgc gcgatggtac      2700
     caccaaccgt tcaacccaga tccatgccgg ggtagcatcg accccacagt cagactgata      2760
     gctcctatcc aggtgtcagg cgccatgtat gtatctgtgg acgcgtcaag ctggcttgtg      2820
     ccgtagcgtt ggccgcctgt atggcacggc atctgtgtca cgttatggcc tcatgcttac      2880
     cgtagtcacg cggcttgcgt gctgtgcggc acgctccctg ccaatccttc aggacatgta      2940
     tgcatacatg ttacttcgtc agagccatag caggggcagc gtgttctgtc aatgcctcat      3000
     gaacccagag acccaagcca acgtacgcat tagttccgca acgcacgtca atgccaactg      3060
     tatgtgtcgc ctgcccactc gcgagtggac gcctagggaa ccaaccttgg ttcctttcag      3120
     ccccggcctt acttcacccg gcggggcaat tacttatcac cgaagtgcta ggagcagtgt      3180
     gctatatgtc attactatta agagcgtatg gcgacacagg ctcacatgtg ggtagccagg      3240
     cttggcaggc atcccaactc agcccggcct cctcacagca gtaccacgac gtgcccgtac      3300
     gtggtcgagt gcggagtttg gctgccggcg tggctgtatc atctctcaca ttggatgacc      3360
     catccgccac tgctgttcac tactggcacg tccctcgagt cgctcaccca ccggctccgc      3420
     ccagcgttcg ctccctttgg ctgggccggg gcccgtggcg catccaaccc gccatcgcgg      3480
     ccccgagtgc tccttatttc ctcccatcac tacgccttct atcactatag atacattgcg      3540
     cgttccacgc gtgccgggta tccttcaccc ctccgcgccg ctcgaccagg ccagccttgc      3600
     tggggttgct gaggtgttac ccttcatgtt gccctccctg ctattacggt acaccccaca      3660
     gctgccgtgg cgtccggtat cggcacgtac gggacattgt gtgcatgcat ccccgcggcg      3720
     tttggaggca aacattcacg tgcgcgcctg tcctgcgtcc gccggggtga tgctatctat      3780
     gggtgtacct actgcttgat tggtagtgac tcttatgcaa gacactgcaa atctcaagca      3840
     tggcacctag ctagcaagaa agaaattagt gttcgtggcc atgctgcacg gctgggcatg      3900
     gctgcccgca tcctacacca cgacggcgcg ggtgaacgaa gggcaggttg ccgcgcgtga      3960
     ctcgcgtacg taaaaccgct ctagtgttgc aactcgcgcc ttctcctgcg tggcgcatgt      4020
     tggctagcct gtcccagctt cgagtcacga cgttgttatt attcccaagg ttgttccgag      4080
     cagcctacaa cgtcaacacg tgttatggca tggccctggg ggccggtaga gagtaccgag      4140
     gtctccagtg gttcgtgcca acacgtgcca acacgcactg ttacctttcc tgggcacacg      4200
     gacggccaca gctgcccaca agccacacac ctgaacaagg atgcatgtgt ttccctgtaa      4260
     cgccccggcg tcgtctgcat ggctggcgca cgcgggataa cgcatgtgtg tttctgtcgt      4320
     ggccattggt gcacctgata cgtttgtgag tctggtatca tggcccttgc aaagccagtc      4380
     gtgttcctat tgctgcttgt cttctggtag tgaccattgg ccgcccatga ccgacggagt      4440
     gtggcgctgt caggccccgc gttggcgtcg ccctgcgcct gcagcaggtg ccggcggcgc      4500
     ctccggcggc gctcatcccc gcgtgatggt gctgctcgtg cagccaatat ccccaagcac      4560
     gaagctcgtt ctattgaccg ctgttgagtg tgcaactagg accgtacgtt cgtgcgcaag      4620
     ctaggcgatg ggcggagcgc tccgcggtgt tcgagacaca tgatttcggt agcgcaaggg      4680
     cacgaacgcc accgccatca ccgccgaccg caccttggtt tgcatgaccg gccgttgggc      4740
     caagcgcttt gcgagaagag ctgcatacgc gaagccaatc aagcccagcc actagggctg      4800
     ccgtcgcccg caccatgacc tcccggcgtt gaggactact accaaactct ggcagcactt      4860
     tcggccacta gtgcaacctc aacacgggcg ggctggggcg ggcacggcgg acttggtggg      4920
     gttatcggga gctgcgaggc cggaggtagg aggccgctga gggccacgaa tgagttgcta      4980
     ggccgcttga ggcatgagtg gaggctattg tcggtttgag agattgggat tgtcgtttgg      5040
     ggccgtggcg gtttgtaacg ctacacggca gtaaggagtc aataagcgct gacttatcgc      5100
     agcgcagtgg agataagtct agttattgcg acgtaactgc cgtgttgcgt tagagtcacg      5160
     cacggcgcag gacgctcggg tacgtgcctg tgcatggggc cgaaccgagc tgggtcttgt      5220
     acgcgtcagg agcacacggc gccttatctg ccgttgtgct tctgtactgt atttcggatc      5280
     gtccctctgc cgggacggtg acaacccacc cgccccccct ggtgccgccg cggattaatg      5340
     tggtggcacc cgtgggcgct gcggcgtgcg tggttgtctg gactctgctg ctatcaggca      5400
     cttcatacat gcgacacacc cagtactggc agcactttcg gccactagtg caacctcaac      5460
     acgggcgggc tggggcgggc acggcggact tggtggggtt atcgggagct gcgaggccgg      5520
     aggtaggagg ccgctgaggg ccacgaatga gttgctaggc cgcttgaggc atgagtggag      5580
     gctattgtcg gtttgagaga ttgggattgt cgtttggggc cgtggcggtt tgtaacgcta      5640
     cacggcagta aggagtcaat aa                                               5662
//
ID   L1-4_CR     repbase; DNA   ; CHL   ; 1609 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   L1-4_CR is a 3' terminal portion of a putative L1-like non-LTR
DE   retrotransposon - a consensus.
XX
KW   L1-4_CR; non-LTR retrotransposon; putative L1 superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1609
RA   Kapitonov V.V., Jurka J.;
RT   "L1-4_CR, a family of L1-like non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 42-42 (2004).
XX
CC   [1] Consensus
XX
CC   The L1-4_CR elements are flanked by 5-12-bp target site duplications.
CC   There are several hundred copies of L1-4_CR present in the genome.
CC   They are massively truncated at 5'. Many elements are just 20-50 bp
CC   long 3' terminal portions. The consensus is not complete at its
CC   5' end. Some copies are identical.
XX
SQ   Sequence 1609 BP; 204 A; 631 C; 438 G; 204 A; 0 others;
     gcctgcatcc tactgcctta gacgacaaca cacactcgtt tcgtccgcgc tcgccgttcc        60
     gccttccatg tagtgctctg ggtgtcagtc agcctgatcc ttttacctac ttgtgtctat       120
     ccgggcatca gcatggctaa cagcaaacgg cgccgcgtgg gggtcaccga ggcatccggc       180
     atcgcggagc aggtcatcgc gctccatcgc cgcccgcgca cgcttcgccc ccggcggaca       240
     tgccgccctc tgcgacaacc cgcggggtca tctacgccgc ccccgcggcc gcatcggcta       300
     cgttattggt gattacttgg tttactcctg ggttctgtct acttggtttt tggttcatgt       360
     gccgccgccc ccgcggccgc cttggcgacg acgtgccgcc gcccccgcgg ccgcatcggc       420
     tacattccgc cgcccccgcg gccgccctgg cgctgcgccg ccgcccccgc ggccgccctg       480
     gttctgcgcc gccgcccccg cggcagccct ggctacgtgc cgccgccccc acggccgccc       540
     tggctacgtg ccgccgcccc cgcggccgcc ttggtcacgt gccgccgccc ccatggcggc       600
     gtgtcgccat cgcgtcatcc caaaaggagt attcgttgcg ggcgtgcgcg gcggcggcct       660
     cccaacccat acacagccct ctggagatga cgccaccggc gataccggcc gatccagggg       720
     cttcagtgtg tcgagttccg tgtgccttgc ctgcagtgcc cctagcccgc gcatgcacac       780
     cccactaacg cacctgcccc cacccggccg gcagccgccg ccccgtgcgg ctgccggttt       840
     cctgacgggt gtggggaacc gcaatgcggt ccgcatccgt cacctgcttg ctgtctgcac       900
     cccttgcctc cttgtctgcg tatgcttgcg tcccttgccg cccctgcgga ggattcgttt       960
     gcgtttgctg cttgtggctt cctggtgtcg cacggcatgc accgcacgcg cccatgccga      1020
     ccgcagtgcg accgggatga gccatgcagc gatcgcgctg tcgttacttc ctcggccgcc      1080
     cggcgccctt gctcatttat ttaaccgcat ccatcacgtc cccgtactta gtgttcttcg      1140
     tttagtcacc ccgcgcagcg cacagccata acagccacag cccgcagccc ggcttgcgca      1200
     ccatgtcctc gcggttgctt tggggttgac gttgcttgcc tcgcgcctag cgccatagct      1260
     tctacgctgc agtgcatcac gcctcctgtc cctccctccc tccctccctt acatgtcgtg      1320
     ctgggcaccg gtggcgctgg tgttctccag gttggtttcg ggcgcatcct ttctggtagt      1380
     cccaacgcca gcccggccgg cgtcgtccag cccagccatc ccaatacagc agccaccttc      1440
     cgtcagccag ccatgggcgc gaccgtccac agcgtttacc gtcggttacg aggtaacatg      1500
     tgaattcgca acttgcgcta ctgactgcct actctcgtgc cgcctgcaag cccactccgc      1560
     cttccgctct ggtctacgta cgcattagtt ccgcaacact cgtcaataa                  1609
//
ID   DNA-4-7_CR  repbase; DNA   ; CHL   ; 709 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   DNA-4-7_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   7-bp TSD; DNA transposon; DNA-4-7_CR; unclassified superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-709
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-4-7_CR, a family of nonautonomous DNA transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 34-34 (2004).
XX
CC   [1] Consensus
XX
CC   100 copies of DNA-4-7_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   DNA-4-7_CR is characterized by 13-bp TIRs and 7-bp TSDs.
XX
SQ   Sequence 709 BP; 148 A; 226 C; 176 G; 148 A; 2 others;
     cagggggggg gtacgaacaa tagttccaga ccccaccccg caaaacctcc cgaccccccc        60
     tgaccgacga ccgaccgtgc cgtaccgtgc cgtacacccc ctaaaycccc tctgttttct       120
     tccaggatgg tgycaaacga ctgctttcag cgagctctat tagcatgtaa acacggaaag       180
     ttcgtcgggc gcgtcttgac cacagccatg ttgtcgacat gttgtgaaca tcttgcggcc       240
     gttcagttgc acccgtgtaa agcacgctta cgagacttac ctacgcatgg gacatacaca       300
     tgcgttttcc tccggcgcgc aagcaccggt ccgcgacttg tggcacgttc tggtcaggcg       360
     agacatgtcg caccccaaca tcccaaccca acatgtgttg acgggcggta gcccttcgtc       420
     ttctggtagg ctcctgacgt ttcccagccg ttaaaagcat ccattacatg ctttgggcaa       480
     cggtctgggc ttgcccggct gtcttatgag gcccagacga aagtttccgg cacaccgtga       540
     cgaaaccttg gggaccccgg ggaccgacga ccgaccctga actttggggg cccatatctc       600
     cgcaattact accctgatca aaattctgaa agcggattct gaacgctctc gtcaagctct       660
     ttcaatttga agggtggggt atgtctgcgg cattcttacc ccccccctg                   709
//
ID   TE2-6_CR    repbase; DNA   ; CHL   ; 784 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-6_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   AAC target site duplications; TE2-6_CR; Transposable element.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-784
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-6_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 141-141 (2004).
XX
CC   [1] Consensus
XX
CC   TE2-6_CR is a family of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-6_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a 18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the AGCC
CC   3' termini.
XX
SQ   Sequence 784 BP; 159 A; 211 C; 251 G; 159 A; 2 others;
     ccctaccgct acgcagtacc ccggcttgcc cctcccccct caggcgcccc gcccgcggtg        60
     taagaggggg ggggggggca gttaccagcc caagccaatg gaggggaatg gaggggtggt       120
     gcaagggggt atgtacagcg attttctagg aagaccaacg cattggcaca tccatgatct       180
     cgcattcagt agttatgtag tyatggtmtt agcgctgatc tgatcagcac ggggcgccta       240
     tcgcgggggg gggggggcgg gacacggcgg gcggaagggg ggcgagagtg gcgtgaggat       300
     cggggcacag ccgtgggagt atgcgactgg ctgctccgct gcgggctacg agcatagtac       360
     cagccattat cgcgcatgaa gaatgaaaag cgcttatcag atcagtgggg cgctgtattt       420
     cgcgcgagga tttaagtgtc ggagggccgg atcctccgat gcctccgatt ccgtcgtcta       480
     tcgccgggcg cctgctcgtt aaattttaca aataacgtaa catacaccac gcttggactc       540
     tagcactgca tcggtacttg tgcgttacac caattcctcg ccatttcact cgtttttgca       600
     aagttatgcg tcgccacaag tacagtgaac agcttcttaa atttagcacg cattttggct       660
     ggagcaacgg ggcgtgccaa gtgcacttta ccggttactg gaataaccgg gagggccccc       720
     cgcggcgagc tcgatgcgac cgcaatggct attgcccctc ccccttcggg ggaaggggca       780
     agcc                                                                    784
//
ID   Mariner-N4_CR repbase; DNA   ; CHL   ; 568 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N4_CR is a family of nonautonomous Mariner DNA transposons - a
DE   consensus sequence.
XX
KW   mariner superfamily; Mariner-N4_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-568
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N4_CR, a family of nonautonomous Mariner transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 132-132 (2004).
XX
CC   [1] Consensus
XX
CC   Mariner-N4_CR is a family of nonautonomous transposons. The
CC   consensus sequence is less than 5% divergent from
CC   Mariner-N4_CR copies. Features of Mariner-N4_CRs include 23-bp
CC   terminal inverted repeats and TA target-site duplications.
XX
SQ   Sequence 568 BP; 124 A; 178 C; 135 G; 124 A; 0 others;
     ccgtactgcc aaaaaggttt cgttttatta aagttcggga gggctgctaa atattgctgg        60
     aataaattcg atacttttta atttcgtggg cggttaggga aaagtaacaa ctctgatcca       120
     aattttcggg gacgccaccg cctccgtcac cgccaccgcc agccatcgtg cgcctgggta       180
     gcatcccgcc acgcacttgc ctacagcaaa gcaagtgccc tctcattgca aaccaagccc       240
     actagcaccg ccgtgccacc actaaagatg ccttcgccag caactgccag cgcagcgcgc       300
     cgctgccaat cacgcgcgca gcacgcgcgc aagctcctca tcaatgggtg tgtcagcgtc       360
     gtccgactca gcgccctcgt gctccaccgt gcctcctcgc agtctccccg cactcccccc       420
     gcgcggcagc gcgcgctaca cgggaaattg ttgctagtgg tatttaattt cgggggaatt       480
     ttcatttaaa taagctgaaa ttgtttcggc gctcaatttc gtggactgtt cacgaacttt       540
     ggatcaccaa acctttttgg cagtacgg                                          568
//
ID   RandI-2     repbase; DNA   ; CHL   ; 6334 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-2 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   RNaseH; RandI superfamily; RandI-2; non-LTR retrotransposon;
KW   reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6334
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-2, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 197-197 (2004).
XX
CC   [1] Consensus
XX
CC   RandI-2 is a family of RandI non-LTR retrotransposons. The
CC   5'-terminal portion of the consensus sequence is incomplete.
CC   The reconstructed consensus sequence encodes a 2064-aa
CC   RandI-2p protein (nucleotide pos. 2-6193) composed of the
CC   reverse transcriptase (aa pos. 90-350) and RNaseH (aa pos.
CC   1570-1730) domains. The genome contains ~100 copies of RandI-2
CC   that are ~1.5% divergent from the consensus sequence.
XX
SQ   Sequence 6334 BP; 1656 A; 2257 C; 1380 G; 1656 A; 3 others;
     caagaacagt gcccctgaca cctttaccct acacagcgca accacaccac caacgcacgc        60
     gctgctcccc agcattgctg acagcaccaa cttcgactcg tgcattgacc acctaagccg       120
     caacaagtcc ccaggaccag atggcatacc caatgagttg cttcgcgcct taccgcaaac       180
     cttgcgtacc actctgcata acctccttac cctgatgtgg gtgagggcac acacaccagc       240
     ctcgtggacg gccagtgaaa cagtcctgct tcccaaacca ggagacccgc tcctcctaaa       300
     aaattaccgg cccattgcac ttgccaatac tacatataaa ctctggacaa gccttataac       360
     cgtagccata tctgacatct cacacgacct agacttattc agcgagacac aagaagggtt       420
     tctgcggtac cgcaacacgg aacgacagac tctaaaccta gtgcacgcac tagaagatgc       480
     aggcctgacc aaacaagaca tatatgtgat gtatgccgac ttctcaagcg ccttcaacac       540
     aatctcacac gacaggcttt tggaaattat gtgggaccta ggcatgccac acgacctgat       600
     tcgtgtggtc caaaacctct actccaatgc gcgcacctac atacgctctg aacatggcct       660
     gactgccccc atctacattg aacgtggcac cgtacaagga gacacactct cacccgtcct       720
     attcctggtg ttcatagaac cactcatccg ctggctgcat gtcggggggc gcggctactc       780
     ctacggctgc ctaccacccc acctgaatgc ccgctacaac tgctcctccg cagcatacgc       840
     cgatgacctg gcagtgctta caaacacctt aagcgacctc cgaatccaat gcgacaaaat       900
     acaccggtac tctgagtggg caggcctcca ggttaaccac gcaaagtgca gagtcactgg       960
     tatcctgcac cgcagagcca tgcaagacaa gggtctgaac gggcccacat gcaaccgtac      1020
     actaagatca atgctggaaa acaaaatcca cattggcacc acaagtatac cctaccttcc      1080
     agcgacggaa ccgttcaagt acctcggtgt gcaagtcaca atgaccctaa actgggggcc      1140
     ccaatttgcg tacctatgca aaaatatcac ggacaaaagc ctaagcctcc aaacatgtca      1200
     agcctcacca gagcaatgcc tgcgcatcat caaatcgtgc attcaatccg ttgctgcata      1260
     tagtttcgcc gtcatgccct acacggaaaa cgacatacgc acacttgaca atatgatcgc      1320
     acgactggcc agaacatgct atcgcctcag ccgcgggttc cccacgcgag ccgtcctaac      1380
     gccagcagaa atgtctggcc taggagtcgg ctccctgctc ccaatctatg tgcagaaagc      1440
     aacacgggcc ctaacattgg ccctgaatga cccaggccgc ctgggaatgg tcacacatgc      1500
     cctgcttgaa ctacagacca gaatagccgg cactacagac atgcacaaac tccgccatga      1560
     aagccactac tatacgacac tgaaacaact cagcatcatg cgcgcctata acctcaccct      1620
     atgggaccac ggggccccat acaaagggcc acccaacaca ctgctaaccg caatcagccg      1680
     cagcccacac cctatctcac accacttggt ccttaccttg acacaagccg gccttgattt      1740
     gcgaaacctt gtaggtaaag agcgtacacc cgaggggcgc gcatgcctca ttccttctga      1800
     catcctcttc caacacctgc cacgcaacca atgccagcat aagcaccgag tggccctaaa      1860
     ccgccttagc ctatgcctga gcgcggaatg cgatggtgcc cgtgaggcac ctttcaacca      1920
     ggctgaaagc tacaaatgtc acttacccct tccgcagcga tacagagccc tccccaacac      1980
     gccagccttt gccgccctcc taccccgcaa tgccaccccg ggcgagctaa caacccaatc      2040
     tacgatggac gcccacctcc aacacatgac tgcactacac cccaataccg aggctcaaac      2100
     accccaacac ccaaatggcc taggcccccg ccaacgccaa accacgttag cccacatgct      2160
     gagaacaaca ggtgccccac ccacagcacc aacccagtcg ccaacggcaa ctctaaccca      2220
     aactccgaca ggcacactgc ctaccccgcc actagcgcaa cccatgccac cgccgctaac      2280
     acagcccacg cccccactaa caacaccagc gggcccggac gcccccaaca cccagacacc      2340
     acccacagta gcgtccctca caacggccca ccagcagcca aaaagtaaga aacaacgacc      2400
     caacgccatc aagcgcctac agcaaaagat tgatgctgac ccccggcacg acccactgcc      2460
     acctaccgat atgcgcagcc acacagagaa atctggcttt atactaaaca acgaccccga      2520
     tgaaaatgac tccggtcccc cgaactttgt catgtgggca ccacactact ttgccaatgt      2580
     acaaaaagac atgcaaggaa ccaaccgcat gcctcgactt ggaattcccc gccaccacag      2640
     caggttcccg caaaaccgca ctcgccccaa cccgacccgt acaatcccag cccacctcgc      2700
     agacccctac ttcctgggta gccaggtgga cgacaccaat ccgctaaatc ccgtcacagc      2760
     ttacatatcc gcaaacccgc caacaacacc tcccacctgt gcttacgact cccgaccgag      2820
     atgggcagac actggggatt tcatgattgc acctgagcct ccaaactggc cgaacatcac      2880
     tggtgccaca ccgggggaca gccacgaccc ccgccaggct gaccacgacc cacaaggaca      2940
     aatgcgtgca gaatatatgc aggagcgtga acgcctccgt gcacacttgg atgaccaccc      3000
     accccaacca aggcccttca agcgttggat gggaatccga ctccagctcc tgacaggcaa      3060
     actaccytgg ccgacgcagg cataccacgt tgcccaagca gcgaagcaac tagtgtactc      3120
     cctgtaccac gacattgagg aaatctcgca cattcaagct gggcccatca ctaaagccgt      3180
     cactgcccca gagaagggtg ccagtctcca caccgagcgc tactatgagg tagcttggaa      3240
     ggacacaacc attgttaaag gagcggctga ggcctacacc cgcatgaagt atactgggac      3300
     tgctgccgca cacatgggat acgggcaagc gtgccacaaa tatttcctgc gcatgaaatg      3360
     ggaccccacc agcgaacccg tagacaaatg ccccaccctc caagggtgga cccctgccat      3420
     ctccgaacac ctgcggaaac ttgcagaacc ccctacaccc acgccacaac ccaagcccaa      3480
     agacgcccgt cttacacctg cccaacagca agggcgatgg acgcaagccg acgtggccgc      3540
     gtcccacgtc cgacgcacca ccaaacagaa cacgcgcatt gacaccaacc cgtgcaatcc      3600
     ctacctcgac gtccacccca ccggaaggta tacaatccaa atcccagaca catacactga      3660
     tgaacgcacc ctcgcccacg tctacaaccc taccggacgc cacatagcat ccgttacgct      3720
     aggtaccttg ctgactctta aagctcggta tgaacacgcc ctatctaccc accatgacgc      3780
     aaccagcccg caccgatctc aagggggctt cccggaagac ttggctaaac tgctactccg      3840
     cacacgggta gacagcaaag gcaagacatg caagtcggcc cccgcacgtg agcgctctct      3900
     ccccgagtcc ctgaagctgg cgctgtayaa ctgccttgcc tcgacacact cagaccctga      3960
     ccgcccagtg gggctggtgg aacgstttgc ctctccactc aactgctcgg gccgggccac      4020
     taaatattac agccaacacg cagctgactc cctcttcggg gcctcacatg atgcgtacac      4080
     ggccccgttt gatggccttt ccctcgccca ccctgaccct gacccagacg cctgcacaaa      4140
     ggcactggcg tgggcaacag catcgatcga acacctagaa caccaggcca cccccgccat      4200
     taccttcatg attatcccac aaggcaaagg cgccgccagc cggtgccttg cgagtccaca      4260
     tgtcaccatc ctggccctga ttccgcctgg cgtatccgcc tctagcatgt tagatggcct      4320
     cggggcggcc gacgaggctg ccagcagcaa gcagggcctg cagctactcc tcattgcgaa      4380
     caccacaggg gtacaagcac tcaactccaa caacaacctg acacgtctcc aaacctccct      4440
     ggccgaactt ggagcggtgc cgccaccgac ctcgcaaccc ccagggcgcc gacaaccact      4500
     ggagtggccc gcgcgcgtaa ccctcccccg tgaccgcaca gccccaccgg gccgaccata      4560
     cagccaccgt gcaaaagccc gtgcaaagca gctaactaga ccccaagccc cagcagcacg      4620
     gggcctggac acatgcccta cgcccatgcc cacgctctct gccctctaca ccacacgagc      4680
     tgccttcccc actcggagca gctacctgta cgatgccgcc accattgttt ggaccgacgg      4740
     atcttgcatc aaagttgcgg ccggtgaaga tggcaacgaa atgaacaaac tcggtgcttg      4800
     cgcgtggtcc caacagaccg aacacatcta cgtcgaacca ggcggcctca acagcaccaa      4860
     cacaatccag agagccgaac tatcagccat tctcgttgcg ttagaataca tccgcccccg      4920
     actctgtctg ctgggcatga cccaagtaac catagccagt gattccctag tgtctctcta      4980
     cttgatccgc cgagccctta ctgcaccaca acgactccta ctatccaagc ataaaaacct      5040
     gctggaaaac atactccacg agctacaaat gtatgccgac gccggggtcc cagtccagct      5100
     gctgaaagtc cgctctcaca cagggctcca cggcaacgag gaagctgaca aaggtgccgc      5160
     caaagtcgcc gccaacgaca tggaggccat ggggcaggcc atacgcttag caccagacga      5220
     accgtggtcc aacatctggt ggcccaaacg caactctgac aatttctacc taagtgacct      5280
     aaaccgtgga gtcctgaact cattgccccc cgaagcacaa caaggcttta ccaataatac      5340
     accagtgctg gagcaatggg cggaagcatc tgccaacatg tgccccaccc tcagcaaccg      5400
     caccctcgcc agctccacca ggcacccctg gctggtcaag caaatactct acgcccgcta      5460
     cggctacctc ttcaacgcac agcttaaacg gcgctaccgc ctgggaggga acggcaactg      5520
     ccccctctgc cacacccctg actccggagg gcacatcctc ggaggctgca cacaccctaa      5580
     aatgaaaggc gcgtacatca atcggcacaa ctgggcagtc cagcgtgtcg ccaaatgcat      5640
     ctccaaaggg acctacggga acgggttcat ggtcatggac gcgggccccc tagccgacct      5700
     gccacactat gcgtctgcac aacgcccccc cgcctggctg gctgcggaga ggacatcatc      5760
     accccttatt acaaggctca gacctgacat tctgttcatc ccaaacctgc ccgcccatga      5820
     aacacataga gaagggtacc gcccgcccct gaacaaagca cggctgccca tctatatcct      5880
     tgaaatcggt tacagctctg acgttcgcca tttggacaag cgggaagaaa aatctcaaca      5940
     acaccaagaa ctcaagcgac tgctggaagc ggccggatgg acggtccact actccaccaa      6000
     tgaatgcctt gcgctcggag tgactggggc catcccttgc aacctcacta agctgctcac      6060
     ctctcaactt ggggtgaccc acacagccgc acgagtatgc ggagagaggc tccacacaca      6120
     cgctgtgaac agtgcgggcg gcattatcaa aatgcgccga gtaaccgagc aggaactcaa      6180
     accgagaggt gggtgagcca cggctccccc acacctcctc ggagtgcgtg gtgaggtggc      6240
     agcgcgaggg ggatgggcct cctcgcccta gccaccttac cccgataatc cacgccaggc      6300
     cccatgggcc ggcgtttgaa ttattattat tatt                                  6334
//
ID   hAT-N3_CR   repbase; DNA   ; CHL   ; 468 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   hAT-N3_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N3_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-468
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N3_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(4), 121-121 (2004).
XX
CC   [1] Consensus
XX
CC   About 30 copies of hAT-N3_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   hAT-N3_CR is characterized by 14-bp TIRs and 8-bp TSDs.
CC   Some copies are less than 1% diverged from each other. Therefore,
CC   it is likely that this family and its autonomous counterpart are
CC   still active.
XX
SQ   Sequence 468 BP; 99 A; 116 C; 139 G; 99 A; 0 others;
     cagggttgcc tagttcgtag tacgcgtact atgtactacg tactgtacta cgtactgtac        60
     gctgccctcg tcggctagta cgttggaaaa tacgttgtgc tggggaaacc agcggggtgg       120
     gccgtggcag cgccgtggct gggcgagggg cgcgaggggt gctggaaagg atgtccgtcg       180
     aagtttgcga accatggctg ctctccgcac tgcagctgtg ttctcttaca acaatatgag       240
     cataataagt tgaaggaaat tccgctagaa gactatgacc gcgcaaatcc aaattcacac       300
     cgattcgggc atggtgcggg cacgcgtgcc gtgtttgcgt cggcttcccc cccggatttc       360
     ctggcccagc gtattatgca ccgtatttta ccgtactgta ctaggaatcc tagtacgctg       420
     tattaatacg cgtattatgg agagagggtc gcgtactagg caaccctg                    468
//
ID   MSAT-2_CR   repbase; DNA   ; CHL   ; 184 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   MSAT-2_CR is a minisatellite unit - a consensus.
XX
KW   Non-autonomous; MSAT; MSAT-2_CR; satellite; simple repeat;
KW   Interspersed repeat; minisatellite; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-184
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-2_CR, a family of minisatellites from the green algae genome.";
RL   Repbase Reports 5(3), 57-57 (2005).
XX
CC   [1] Consensus
XX
CC   The MSAT-2_CR is family of minisatellite DNA.
XX
SQ   Sequence 184 BP; 37 A; 67 C; 41 G; 37 A; 0 others;
     tggggtccac accgcccagc catcaccaca caccccacct gccacaccca cccttgtgca        60
     ctgttgtttc acattttcat atgtgcatgt tgcctgacct atttgcaatg cagacacgag       120
     cagggagcca tgttgccagc cctcacagtg ccttcagtgc ccctgcacgc ctggacaagg       180
     cggg                                                                    184
//
ID   NonLTR-3_CR repbase; DNA   ; CHL   ; 1070 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   NonLTR-3_CR is a 3' terminal portion of a non-LTR retrotransposon - a
DE   consensus.
XX
KW   Interspersed repeat; non-LTR retrotransposon; NonLTR-3_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1070
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-3_CR, a family of non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 5(3), 64-64 (2005).
XX
CC   [1] Consensus
XX
CC   The NonLTR-3_CR elements are flanked by 5-10-bp target site
CC   duplications.  NonLTR-3_CR elements are ~98% identical to the
CC   consensus sequence.
CC   The consensus is not complete at its 5' end.
CC   The 3' terminus is composed of ATGCTC repeated two-three times.
CC   The NonLTR-3_CR and NonLTR-2_CR consensus sequences are 65%
CC   identical to each other.
XX
SQ   Sequence 1070 BP; 212 A; 311 C; 366 G; 212 A; 0 others;
     ccgccatggg cgcgggctgc taactctcga cagtggaacc tcagcccgat cgtcgcccca        60
     gcccgagctg ccgccgagca cggcgagcag tgggcctggg tgccggttgg aaagctttgg       120
     gagcttcagt agtgtcagcg accagcagga ctcctgcccg gctgccagca ctagtgcgat       180
     gagcatcggc actccggact ctggcgcggc cttcccattt cggcgcgcta cggaactgct       240
     gcagcgtctc acgcgcctgt cttacacgac ccgcctgttc gatctcgcca caacaccagc       300
     gctcgcgacc atccaggagt acctagcggc cttggaggag gcacttgggc agctagagca       360
     gcaaacatca gcagccacgc agcacggcga cagcattcag cagctgcagc tacaagcgct       420
     gacgctccac gcctctgtct cagaggccca gggcgctgcg cttgcagctg aacggcggca       480
     gaaggagctg caaggcacgg tcgcagcgct gcaagtccag atggaggagc aacgttgcgc       540
     gctagaggac acccagcgcg ccctggcccg agcagggtgc tccggggggg tcgacgaggg       600
     taaagtcctg ctgaagtcgg ttagccctga gctgctcgag aaactcaagg cggctggaaa       660
     tctggaggcg gtggccagtg cgagtggcgc aaacgtctcc ggacgatacg tgcgcgcgtg       720
     gcggtcaaag ggtagggagg tgtggaatgt cgtggtggag gtgacacagc aggagcggag       780
     cgcgctcatt cgggtggcgc agcaggtccg tgcggctggt gccgttgtcg caccgtatct       840
     gacccgggta gggtgtgaga tgcgcaagga gcaactgaag gcttttgagg agcttcgtga       900
     gaaggggctc cgaccccgat ggaaaggtgg agcgggcatt acgtgctcag gcgcgtaaac       960
     agcgtataga cgctttagaa gacactttgc tttttgctat caagcgcctc cggactcaga      1020
     agagttagtg gggccacatg gactccgacg ccatgtaaat gctcatgctc                 1070
//
ID   L1-3_CR     repbase; DNA   ; CHL   ; 1991 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   L1-3_CR is a 3' terminal portion of a putative L1-like non-LTR
DE   retrotransposon - a consensus.
XX
KW   L1-3_CR; non-LTR retrotransposon; putative L1 superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1991
RA   Day A., Rochaix D.J.;
RT   "Characterization of transcribed dispersed repetitive DNAs in the
RT   nuclear genome of the green alga Chlamydomonas reinhardtii.";
RL   Curr. Genet 16(3), 165-176 (1989).
XX
RN   [2]
RP   1-1991
RA   Kapitonov V.V., Jurka J.;
RT   "L1-3_CR, a family of L1-like non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 41-41 (2004).
XX
CC   [2] Consensus
XX
CC   The L1-3_CR elements are flanked by ~15-bp target site duplications.
CC   There are several hundred copies of L1-3_CR present in the genome.
CC   They are massively truncated at 5'. Therefore, the consensus is
CC   not complete at its 5' end. Some copies are identical.
XX
SQ   Sequence 1991 BP; 220 A; 763 C; 570 G; 220 A; 32 others;
     actcgctgcc gcccgccgct acyatgtrct ccaacraccc cttccacggc cagctgyagc        60
     ccccgcacac cmtgcagatt cygccggagc agccwctgcg cgcgcccccc gcagctgcgc       120
     gcgccacggc cgacgccgcc cacccgcctt ccttacgccc cgttcgccgg cgcctccctt       180
     caacccgccg gcgctgctcg acctgcgccc nctctgccac tnccgtrctt gccagacatg       240
     gtgctgtccc ttccacgccc ccacggccca gccacctccc cagcctcagc ctcctcctcc       300
     ccagcctcag ccttagtccc ggccggcctc ctcctcctca gccctcagcc ccaggccggc       360
     gccgccgccc aaccagccgc cgtctgacag cccccggccg ccgacgcacg cctgcttgcc       420
     gccaacacca tcgtgttcgg atgcgtgccc cggtaccccg cccccgccgc ctctgccgct       480
     gccgccacag ccgccgccag ctgcgcctcc ccctccgcca tctctcctcc ctgccgccgc       540
     cccctctgcc gcctcctccc ctcccatggc ctccgactgg tcaccccgcc tagcactctg       600
     ctggcataac cgagtccgcc ccctcctccg tctccgccgg nccgctcgcc mgcaacagcc       660
     cgcggrcaag tcggccgcag cctccagcta cagcccgcgt gacagcmccg gcgcacrtgg       720
     agctctgggc ctkggtagcg gcggtaccga gcggtgcggc ggcwwtagta agtgcatggg       780
     ggtggggcgc cggacgcggs cagggcacgc cgctcggcgg tgtgccsgtc gccgcgccgg       840
     tgttcctaac gccgcggctg ccaggcgagg tctggtaacg ktggtarcgc gsktktgtst       900
     gggggcttgg cgccgggtmg cgggtcgtcg atcgygccgg ccctgggctg ctggcgcggt       960
     cgcttcggta cctggccttt cggccggcgg gctgcgcang tgtgtgtgcg tgggcgtgtr      1020
     tgtgtgtgtg tgcgngtgtg tgtgggtgtg ggtgtgggcg tgtgtgtgtg tgngtgtgcg      1080
     tgtgcgtgcg tgtttagtgc gtgcgcgtgc gtgcgcgtcc gtgcgtgtgc gcgtgcctgt      1140
     gtgggcgctt ctgggcctgc tgtgtggctg ctgtgtcatt tttaacgcgc gtgcctctgt      1200
     gcctccgggg agctcttggt gagcccggac tcccgtaacc gtgcgcacca cacaccgacc      1260
     aggcagctgc tacagaccgt gacagtttca ctcgccagct gtgcccgccg tccccgcctc      1320
     tcctgacagc taaccgcctc ctgtgcctca catttcatat ctgcctacag tgttcacact      1380
     ccagcgccag ctcgagggcc agctccagcg tgcgacgcca gcaaactttt tcgcgaaccc      1440
     gcattcggtc cttagggcgc gcggtgcagc cttatcccga acttcagccg cgacattccc      1500
     aatccaaccc gcgcttcctc acactccggt tgtgtttgtc tcgcactcgc attcgattcg      1560
     cccgccactc atccgtacat tcgggctccc ttttctgcct tgccgcgccc tgttttcgcc      1620
     cctgcttgtc atactgtcgc ccggccattg ctttgctgca tactgttgca ttttctctat      1680
     gttgcatttg gtgctcatcc gtggacgctg gtcatcttcc tgcaggtgcg gtgcggctct      1740
     gcatcgcgag cgagtgtggc gttgcggtgt gtctgtgtgg tgctatcgcc tggccgggcg      1800
     cccggagcgt gaggaatgcg catcagcaaa cttccagcca gccagcaact tgtcggtaca      1860
     gtaactccgg cgttcgacca gccatgcact cctgctctgc cgctgcaaac tgtttgctgt      1920
     ctgcttgggg tacgggcgtc agctgcaccc tatgggacct cgccaacctg cctgaaccct      1980
     gtcccatcac a                                                           1991
//
ID   TE2-7b_CR   repbase; DNA   ; CHL   ; 772 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-7b_CR is a subfamily of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   AAC target site duplications; TE2-7_CR; TE2-7a_CR; TE2-7b_CR;
KW   Transposable element.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-772
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-7_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 143-143 (2004).
XX
CC   [1] Consensus
XX
CC   TE2-7b_CR is a subfamily of nonautonomous transposable
CC   elements. The consensus sequence is less than 5% divergent
CC   from TE2-7b_CR copies. Classification of this family is not
CC   known. It is possible that it belongs to a novel superfamily.
CC   Features of this superfamily include preferential insertions
CC   into AAAC targets that are accompanied by the AAC target-site
CC   duplications, a 18-21-bp palindrome separated by 3-5 base pairs
CC   from the 3' end; and the AGCC 3' termini.
XX
SQ   Sequence 772 BP; 158 A; 226 C; 218 G; 158 A; 0 others;
     ccctaccgct acgcagtacc ccggcttgcc ccctccccct gtcgcattgc gcaccattgc        60
     aggccacgca tgacgggaac ttaacccccg atcccagcat ttcatcggct atggtcacgt       120
     tcccaacgtc cagttccgcg cagtcgcagt tgtgcgaacg ggatgggagg gagatgcggg       180
     gctggtatca ggggagggat ttgcgcgggg aggcgccggt gaacacagtt gcatttgcgg       240
     aaggcgagag agcgcgggcg gggcgggggc gagtcggggg cagggggccc gagagttcgc       300
     acacgatttc gacaaatcgt caccacgata gtatgcaccg ttgatatcac aaaactcagc       360
     gctgcttatg cattgcgatg aagcacattg cctttctgct atcgccgatc ggagagatcg       420
     catgcgcttt gctgtttgcg ctcgcacata tccaagtcta tatgtttgcc ttgaagaata       480
     tcgtctaccg caattcccgg aaatgcaaag ccaatcgcgc tatcgagcgc cgggatcctc       540
     caacgcctct gatctcttcg cctctagtct tacgccttcc ttgtgttttt gcaaagttat       600
     gcgttgctac ggacacattg aaaggcgtat tatttgcaca agaactctgg ttacgttcgg       660
     gtttcccgac gtaactgcac ataaaactgg aataaccgtg agggcccccc tccggcgatc       720
     gatgcgaccg caatggcttc cgcccctccc ccttcggggg aaggggcaag cc               772
//
ID   RandI-1     repbase; DNA   ; CHL   ; 10812 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-1 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   AP endonuclease; RNaseH; RandI superfamily; RandI-1;
KW   non-LTR retrotransposon; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-10812
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-1, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 196-196 (2004).
XX
CC   [1] Consensus
XX
CC   RandI-1 is a family of RandI non-LTR retrotransposons.
CC   Approximately 100 copies of RandI-1 are present in the genome.
CC   They are ~1% divergent from the consensus sequence and are
CC   likely mobile. The RanI-1 elements are usually flanked by
CC   10-15-bp target site duplications. The 5'-terminal portion of
CC   the consensus sequence may be still incomplete. It encodes a
CC   3571-aa RandI-1 protein (nucleotide pos. 2-10714) composed of
CC   the AP endonuclease (aa pos. 990-1250), reverse transcriptase
CC   (aa pos. 1600-1900), and RNaseH (aa pos. 3040-3200) domains.
XX
SQ   Sequence 10812 BP; 2610 A; 3799 C; 2691 G; 2610 A; 0 others;
     tagaatgcat acaaatacac ctcttaccaa cctcgcaagc tcgtcgctag gaaatatgtg        60
     gaaaatggtt gctcggcgaa aggtggagcg aaagtccgca ggtatctgcg ttctgatatg       120
     ctttgcactc tgcatgctga caaccaacgc gaccacggct gggaacgcgt ctggctctgc       180
     cgcggccgac cgctggtttg accggggacc gccccggcat tccagcgctt tcgcgctatt       240
     gggcaaccat gaccgtacca tgccaatcca aaagtggtct gcaagaggtc tcacgacctg       300
     caccgagagc tcggcgaaag ggggatgttc gcatgtttgc aacagccggg caactggcgc       360
     acagctgcca gccctaagcc acactgatgg ccccattgcg acacatggaa ttaaccacgc       420
     acacggtagc gtgtggaggg agaacttcag ctttgcgcac tcgatgttca cagtacactc       480
     gaaccccgcg aacgcgacgc tcttgtcgga tcgctgctct cagaaaggca tatttgatac       540
     cagtatactg cacacgacgt gctacacagc tagcaagcgt gctggcgccg aacctttcgg       600
     catgtcgcca aagagacctt cgcaaagccc aactgctgca aaacacccgt cttttgagga       660
     gcttataagc tccaagcaca taccagttgc ctcagagccg ctcgccaacg acgtcccaga       720
     aaggggccga gccgaacctc cagtatttac agctaattcc cagctctatg aaaatgcgag       780
     tttgctcaca gaaccaccac cgacaagctc cgaacgaagg caataccgaa gccctagcgg       840
     actcctgtcg cgcgcaaagg ttaagcccaa gcctggatgc accaacatac gcaatgtgat       900
     gataacggct ttgcagccgg taggggaggg gctcctttct acaaatctga aaatagcaca       960
     ggcatgcaga agtggcgtga caaagttatg cacagcggag ggagcatacc gttcatatgc      1020
     gactaagaca atcgggctgc ttggagagag cctgttgacg agtgtgcttg cgctgggcga      1080
     cctgggcagt cggcatggag gaaccatgct gcgctccggt gcttcggcac tgcactccat      1140
     ggcagaaaca gcctacgggc cgcaaccgac ccttaactgt agcgccccct gggaaaattc      1200
     accactcctt cgcctgcacc ttacactcgt cgtccacttc cactgggctg gagcagggca      1260
     tgtgcgggca gccatgcaca gccatacaat tgccatcaga gtaggcgcac accttgctac      1320
     ccggtctaga ctcgccatct accaaacagc cgcccagact ggcaaagccc tacacaccat      1380
     acttgacaaa gccattgtca gcctcacaat catcaccgcg acaggggcca tgtatatgct      1440
     ctggacccac ctcctgcatg ccgaaacccg cactgcctca gtcaactcag aaatctgtgc      1500
     aaacggtgca atcctcagcc tgctactatg gggtcccaca ctcaccactc tcgctctctc      1560
     ccctctgtgt gtaatagcgc ttgccctcgg gataaccgcc atccccgcag ccctcggtct      1620
     cctgttcgca ctgacagtga catccatcct tgccgtcctc tgtctcccag ctctcctcaa      1680
     acatgtggtc caagtgacac ggcagatagc ctctgcaacc tgggcccggc ggaagctact      1740
     actctgggga acggccatgg ccatcatcct gcgaaacctg tacctcacac tgccggaccc      1800
     ttgcagtgtg caaccggcac agccggcact ctgggggcca gcattggtca ccggcctact      1860
     tactgctagc caggcaacca ctctcctcac gcttacatat gcagtaaacc ggacacacac      1920
     aatgccctac gtcaagccaa cactgcgagg tgcgctgccc acagacccga cagccccgcc      1980
     ggcgcccgcc gaccctcgca cgcatgcggc agtgaacatc cgaccaccag ccgcactgca      2040
     ctggccgcca aaccccaaca ccacataccg tgaaacacag cggcaacact tctgcagtgt      2100
     ccacgccctc aacaactctt tggggctcgc atggctcgac cccctggatg tcctctctta      2160
     cgctaaacga gtgcacgctc acctcacagc cacgcaagac ccgaatgccc tgttctggaa      2220
     agaatgctac tgccccaaca gtggcgcctt cagcgaattt ctcctgaacc actacctgta      2280
     ccacaatgcc accatcagca acatattcgc ctaccccaac aggaagctga ttatgcgccg      2340
     aacccacttt ccgcgactca acggcgacat cagcaaagaa aaggtcctag agagccttcc      2400
     ggtagccgcc cgaactcgcg gctttaccgt ccaccagtac actgtgcgac acacaattgc      2460
     tgtgcgttac gaagcaggac aatggagagt aatagactcg gtgaacagcc ctatccacaa      2520
     cacggtctta cacgacaaca cttggaacac acttgatggg gaggtctggt gccttgacgc      2580
     ggtgcgtgca tctgacacgg caacacttca ggacgcactt gggcaactcc gtgagatcgt      2640
     cccgccacca cgcccgccac cccacatgga ggccaccaga cccgtgcaga cagggcccgc      2700
     cgccacagga aggccggcac cagagccagc tcaacatgcc caagacaact caccgctgcg      2760
     ggcagcacac agggcgccac agcatgcagc accccacact accgcacccg cgcagccaca      2820
     caatgcaaat gccggcatag caccccgact caacacgaca ggcacccgac aaactatcct      2880
     taactggcta gtacggccca ctgcacgcaa ccacgcccac atggaaccca accaggcaca      2940
     cacaaacacg cgacccccca gcagcaacac caccctacac atcgtgaccc acaatgtacg      3000
     gggactgctc tcagaaattc tgtccaccgg ccaacccggc aacctcagct tcaccctctg      3060
     caacctagcc cagtggaaag ccgacatagt tgtcctaacc gagacaaaac tgacagggaa      3120
     gactgactct atcaagcgag ccttccgaaa tgaaggatac cgcctctact gtagcactac      3180
     tccccgcgtg gccacagcgc gcggtagcgc tggcgtagcg gtggccatct ccgcccggta      3240
     cagtgacctc ggctgtgtca cacaccacac gcccccacca acactccatg gctatgtgtc      3300
     acacgttcaa attaagaccc ccgggagcac gcctctcact gtactgggca tctacgcacc      3360
     agaggacatg caaacccgca aggcaatcta cacatactgt cagcaggtgg taggccgggc      3420
     ggacgcgtgc ggacaccacc tagtcaccgc gggagacttt aatgccgtcg cccgagcaca      3480
     tgagcgggac agccccatcg acacggcgga ccgggcccac cagcggttcc ttgccgatag      3540
     tggcctgcgc cctatccgcg gagacaccac taccactgcc gaatggtcat atgaacaaac      3600
     acgcccgggc atggccccat accacagtcg catcgatgac atcctcctat gccctgccac      3660
     gcgcgctgca tgcacagaag cgcgtgaata caccagtaca gttgcaggca actttgacca      3720
     caaaccagtc cacgcagagt tactagccgc ggacctacag ctatggccgg caccacaggc      3780
     cggcgcccgg aacccagccc cccagcagca gacccaacaa cgatgggccg aggtcgccct      3840
     gcccgtcaca caaaagcaac tggccgccgc agctatccgc cttgaggaag ccttggtgga      3900
     agcaacagcc gacctgcatt ccgcaacaag gcaggcaacg caatcaattg aacatgcact      3960
     cacgaggcac agcatggacc ccacaggcta ccccgccagc gtcatgcacc gagacctggc      4020
     gcaggacacg agcatccaga aggccgatat caaccaactt gcagaacaac ttgcctccgc      4080
     actggacacc gggctaacat gcctccttga agagtgcacc cggaaagccc ccttcactgg      4140
     caaacaccac gcatcacgct ccaccgcacg ggtgctaaag cccctatggg acaaggaagt      4200
     ggccctgaag acacaactga caaacctcac gcaagggccc caggccctac ctgaggtaga      4260
     cgccgccaat gcagcggcaa agctgcggaa cgaaataaag gcctgccagg ccgagcaccg      4320
     ccagctagtg gcggaccgcg ccaaagccca gcgagaggcc gctgccacag cgctgcaaca      4380
     taccctggcc acgcgccctg cacaggggca caagagaatc tttcagaagg aagacatgga      4440
     acggggtctc ccagcggtcc ggaacccaga aactggggag gtgacgactg actccaccag      4500
     catcctcgcc atactcgaaa cccacttccg aaagctgtcc gccccaccac gcggcacccg      4560
     cactggggac ttccgactac ccagcaacgc cacacgcggc tacccatttg agaaagccga      4620
     cgcaacagat caattcacac tggaccgcaa ccggcaccct gacacacact ccatgctccc      4680
     cagcatggca gacacggcaa attttgagca gtgcatttct cacctctcca gaaacaaggc      4740
     gacaggccct gacggcatac caaacgaact gctccgtatc ctgccatcgg gcatgaagcg      4800
     caacctccac tgtatcctgc aaatcatgta cgtcaagtca caaatacctg aaacctgggc      4860
     cgcatcggag accgtgctac tccccaaacc tggagacgcc ctggacataa aaaacaaacg      4920
     gcccattgcg ctcgcaaata cctgctacaa gctgtacacg tccatgctta ccttgggcat      4980
     tggcgaactg gctggccccc tccagctatt cagtgaagcg caggaaggct tccgtgccta      5040
     ctgcaacacc gaaaggcagg tcctaaattt agtacatgcc cttgaggatg ccgcactgtt      5100
     tggaaaagat gtctatgcgg tatacgtgga ctatagctcc gcgtttaaca caatcgacca      5160
     ggaccgatta ctacaaatta tgtttgacct tgggctgcca acggacctga tccgcgcagt      5220
     ccgcaaccta tatgcacatg cgaccacccg catccgcacc gaacacggaa gcacatccgc      5280
     cattcctata gagcgaggca ccgtgcaagg ggatacactc tcacctgtgc tctttattct      5340
     gttcatggaa cctcttgtcc gctggctcca tgcgggcgga cggggctacc actacggctg      5400
     cctgaccccc agcgaaaacc tgcaatacca ttgcagtgcc gccgcgtacg cagacgacct      5460
     ggcggcgctc accaactcgc tcgacgacct gcaggttcaa tgtgacaaaa tcgcatctta      5520
     cgccgagtgg gcgagcctgc gtgtcaatca caccaagtgt gccaccaccg ccatctggca      5580
     cgacaaatct cgctcggacc ccaaccttga cgggcccaca ggaaaagcta cccttgccgc      5640
     catgcgccgc aacatgacca acacaattaa gattggcacg acccctgtcc cgtacttccc      5700
     cccgacccag ccgtacaagt acctgggagt gcagctcacg ttctcgctgg actggtcggc      5760
     acatgtcgca agagtcaccg agattgtgaa ggacaagggc acagccattg ccacatccct      5820
     ggcgacaccg gcacaacgcc tgcgcatgat acaacagtgc gtgcacacca cagttgcata      5880
     tggattcgca gcaatgccct tcacaaaaca ggacataaca acgctcgaca ctaccctggc      5940
     tggttttgca aagcgctgct acggactccc ccgcagcttc cccacccgga cctccctcct      6000
     gcccgccaac gaatacggct tgggcctggg ctccctcctg ccgcaatacg cgcgcgtggc      6060
     ccagcgagcc ctggtccttg ccctaaatga ctcgggccgt cttgggatag taacccgagc      6120
     ccttctgccg cgccaggcaa gcatagctgg ccccacacag gcccaccttc tcccagccca      6180
     taggtcacac caccttacga cgctgaaaca gatgaccctg gcaaaagagt acggtgtcac      6240
     actgtaccaa aatgggtctg cctttactgc gcctacctgg tccattgccg ctgcccttga      6300
     ggcagaagct gaggcccggg gcgtcgaacc tctccccatt gaatacgtcc tccctcttgc      6360
     ggacctgagg ctcgaactga gccacctggt ggaccgcaac acaggcaaac acctgattac      6420
     tagctcggac ctcgagaagc acatgggagc gagccgggtc cggcacaagc acaaggtagc      6480
     cctgaacagg cttagccttg ctctcagtat ggctgcacgt gcaggggaaa acgctccagc      6540
     ccacggcagc cctgcccccc tgaccaccgc acagcgtgca ctgcctgacg tggccgcaat      6600
     cgtggcctta gccatgaggg cggaccccct ccctctcgga atggccaacc ccctcgaccg      6660
     gtacctgcag cccctcccgg aggcgccccc cgcccaagca aacaccacgc aagcccccgc      6720
     cgacctagcc cccccctccc cagcaggggc ggcccaggcc catcccggcg cacaaggtgc      6780
     tgctgcaccg gaagtccccg ctgatggggc aacgcaaccc tccctacggc caccggccag      6840
     agcccgcaag ccggctacaa cacgccggcc accacagaac caaacacgcg cacggcgcgt      6900
     tacaaaacat gcagcgcaac gcgcacgcat tgcagaaact acacgcacta cccctgagga      6960
     cctactcacc ggggaccgcg ccgccatcaa ccatgccctg cggctcacca acggcgatga      7020
     gagcctgccg gtgggcacgc gggggtacga aacggcatgc tcggtattcc aagcgctcgc      7080
     caaagacatg acaggacaca tgcggatctg ccacccacac ccacaagacc caccctccct      7140
     tgcacatgct gtcgaaccac gccaacagcg ccgtgggcta ccacccgccc tcacatcccg      7200
     cctcacggcg aatgccgcca accccgaacc caacgccata agcgagtatc tgaacaacac      7260
     aggattgcct atggaagtca accaggctgc cgctcacaac gaccccatgg acgctgatag      7320
     cccgacgccg cccctgaccg ccccggcagc gcaagctgcg ggaggccacg gggcccgtcc      7380
     cagctggcga ctggcccgcg ccaggatcac acacgatcta gtcccacggc ccgccgacaa      7440
     ccgcactaac ggtgacactc aactcaccta cgacctggac aatgacggac aggaactggc      7500
     acaggtcctg cacagcgaaa acaaacaaac tgtcacggac aaagaactga cacggaagcg      7560
     caaagccaga gaggacacct ctgggacacg tgaaaaatac tggaaggtgc agtggaagcc      7620
     gtccatttgc ccggccggca ttgtctctgc ttttgttcgc atgggctacg caactatcca      7680
     gaatgccagg tgctacaagc accctcttgc gacgcgccca ggcccacaac ctgcgcagac      7740
     cgaggctgag cctccggctg aaacccaagc ccacgcaatc tcacctgaag agcctgccca      7800
     agctgcagag ccggcagcac cgcagcccac tggggccccc ctattctcgt cctggacgac      7860
     caaactcctg cgacatgtca cgtgggcgcc gagcacggac cgtgaacggg acctaaaaca      7920
     cagtccacaa tgggaggagt tactggagga gtgcaaaacc cggctagcaa acggtaccaa      7980
     ccaaggcccg cggccccgaa cagtgcgccc cgcacctgat cggaacctta ccgccagaca      8040
     gcgccaaggc cgccacgacg ccgagcccct ggataccgca tcccgcgcgc gtgacatccg      8100
     cacgaccacc accatcacca caagcccgtg caacccctac aaggacatcg tggcccccgg      8160
     agcatacaca attaccacca ctggtggcac ccgccgtgac ccagctgagg cgcacgtcca      8220
     tgaacccagt ggccgctggc tgggcaccat cacctacccc cgcctcctta ccctgtggga      8280
     gcgcttcagg cacaccggca accagcggcc caacgccttt gaggaagcgg tcgctgccct      8340
     catcatgcgc taccgctatg acccggcgca gcaggaccgc aaggccatgc caatgcacca      8400
     ggtgtcgctg ccggcaggca cagtagcagc catcgtccaa tgcctgcggg tcacacaagc      8460
     agtacacatt cgggaaatgt ttgcgtcccc actaaactcc tccactgcag cccacgaata      8520
     ctggacacga gaccctgctg atggggcctt tggcgcactg cacgatgcct accagaccgc      8580
     atggaccggc ttgcaatatg cccacccccc ctctaccccc cacgatgcac ggaaggcgct      8640
     catgtgggcc ctcgcatgcg ccgaggctat gcgtgactca caggaaccaa cccttactgt      8700
     attggcgctc cccaaagcgg ccactttccc ccacacgcag tggcttcaac acccactttg      8760
     ccacgagctg gccaactggt ccgcgggcac cgcgggcctt gacacaggac ttggcaccaa      8820
     cacccaggct gaacgccaga aggggctccg actggtcatt gttgggaacc ccgccggact      8880
     ccagtgcttt gccccccgcc tgaaacggct cgtggacaca ctgaaacggg gggcgaacgc      8940
     acccacgcac atcagcgacc cgcgcacgtg gacacacacg gccacggccc caacctgccc      9000
     ggccctccca aactcacttc taaagcaagc caaataccag cacgctaacc caaagacgat      9060
     acacgccatg gctgacgaag cacgacgctt tcctaacgcg cgattccaga cccaccatgc      9120
     tctggcccac gacgtgaatg gcactgtctg gacagatggt tcggtaagca aaatcaaaac      9180
     tgacaatggc aaagaagtcc aggttgccgg cgcctgcgcc tggttcagcg attctcgcgt      9240
     tgtctacgtg aatccaaatg gcgctgggtg cacaaacact attacgagag ctgaactggc      9300
     agcaattcgt gctgccctcg cagaatttgg tggcgaaggt aaagaatttg caactaagaa      9360
     gctcactatt gcatcagatt ctgttgcaag cttgtaccta atcaaacgag caattaacga      9420
     gcctcggcga ctgcatctga gtaaacatcg ggacctcctg gattcagtcg tggcattgct      9480
     ccatgcacgc cacgcccggg gcgcacccac cgctctgatt aaagtgatct cgcacaccgg      9540
     gctacacggc aacgaggaag ccgataaagg ggcggctgcc gtcgccaccc aggaaaaacc      9600
     cgccgatgta tccgaaccgg ccgacaacga cccgcacgcc cggcactggt ggccgacctt      9660
     cacggtcacc agggacgacg atagcacagc cacgcactac gtgtcggacc taaaccgggg      9720
     cctcaccagg gcaatggccc ccagctgccg tggtggatac gccaacaaaa ccctgtacac      9780
     tgagaaatgg gccgaggcag cacccagcct tgacccacgc gccagtaacg cgtacatgac      9840
     gaactcggac gccagccacg gcctacgccg gttcatacag aatgctcgtc agggaggcct      9900
     catctgcccg gcccggctgg ctttgtttaa actacgagac agcgacaaat gtggtctctg      9960
     tgcccacacc cagcgcagcc gcggatctga cccagagcgt ggcaccgcag gtcaccttgc     10020
     cggccactgc gcgcaccccc aactcgttgg cgctaggata gccaaacaca acactgcagt     10080
     gcggacgatt gccgaatgcc tacaccatgg tcacaacggt ggtggctaca tgataatgga     10140
     tgccacctcc cgagctgaac tgcctgagta ctgtgcgggc atgcggccgc cgtcctggct     10200
     ctgcccgcaa gtgcccgctg cagacctcaa caggatgcgg cctgacattc tgtttatccc     10260
     gaaccttccc cggtccgaag cagaacgctt catgacatcc ccaccagcca acaaaggggc     10320
     ctacccagtg tacatccttg aagttggata cacctctgac ctgcaccaca gcgagaagct     10380
     cattcaaaaa caagcacagc acgccaccct tgccactgcc atgcgagctg cagggtggac     10440
     tgtgcactac gatactaaac acgttattac actgggccac ggtggcactg tcccccgtac     10500
     ccttgaaact ctcctcaaag acctaggagc caaaccgcag gcagccaagg cctgctgcac     10560
     acgtctccac atgcatagcg tcaccacact ccggggcacc gcaaacctgt actaccggct     10620
     agagcgagag atgggcattg ccaacacccg atgccgcccg ggaggccgca cccaggggac     10680
     cgccaatggc ggcccccgcg caggggagcc ggggtaggga aatcaagttt tccgatggtg     10740
     gggtgagctt gtctcactcc tccttaagac acgcgggcac ctgtgccctg cgtagatatt     10800
     attattatta tt                                                         10812
//
ID   TE2-5_CR    repbase; DNA   ; CHL   ; 751 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-5_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   AAC target site duplications; TE2-5_CR; Transposable element.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-751
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-5_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 140-140 (2004).
XX
CC   [1] Consensus
XX
CC   TE2-5_CR is a family of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-5_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a 18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the AGCC
CC   3' termini.
XX
SQ   Sequence 751 BP; 146 A; 200 C; 241 G; 146 A; 0 others;
     acctaccgct acgcagtact ccggcttgcc cctcccccct cagggcgctc catgccgtgc        60
     gccccggaat gcggtgtggg gatggggtgg ggtgggatgg actggcggat ggtggaagta       120
     tcatataggt ctgctggggg ctgcgagcag ccatactacc ggtcatgata ttgccttcgg       180
     tagctcaggg cgccgcgggc tgggggtggg taagtgagcg gggatggggg ctcggactca       240
     gcgggggcac ggactcaggg cgtggaagcc agcgagaagc gggcgagagt aacgccgatg       300
     tgccgggtga tgtgcgagca gaatacagaa cgcggcattc gtcattacgg ggaaactaaa       360
     acagatagcg ccaacctttt gcgcctcgcg ctttcgcgcg caatttccgg gatcctccaa       420
     cgcgtcgatt cctccgtctt gcgtccttcc gtgccgggag ccttgattat cgatacaatt       480
     tgtgatatat tgtatgttgc gctggagctc taatgcaaac gctgcgcttg tgcgtttacc       540
     ccgctctggc atagggcttg cgttttcata atgttacgct ttgcaataca tacatagaaa       600
     ggcgcattat ttgcacgaca aatttcgctg cgctcgggtt tcaaggttat aactcaagtc       660
     aaaactggaa taaccgggag ggccccccgc ggcgagctcg atgcgaccgc aatggctatt       720
     gcccctcccc cttcggggga aggggcaagc c                                      751
//
ID   hAT-N6_CR   repbase; DNA   ; CHL   ; 488 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   hAT-N6_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N6_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-488
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N6_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(4), 124-124 (2004).
XX
CC   [1] Consensus
XX
CC   About 100 copies of hAT-N6_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   hAT-N6_CR is characterized by 15-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 488 BP; 102 A; 112 C; 167 G; 102 A; 0 others;
     cagcgctcgt atcttccttc gttcggaacg aaatttgccc aaaaaggcct ctggcggacg        60
     aaattttttt gatcttgact tggaatttcg gccaaaacgc acgggatctt ggggggtctt       120
     tcggcaaaca gacgaagaca tttttgggat ttcggccact tttggccaag gacagggggt       180
     tccagcggct actccacggc cgaaacctgc gtggcatatg gtaagaaggc tcaaagggct       240
     gtatctatgg gtgttgacgg cgggagacag gggttcccct ggcgggagag tgaggttggg       300
     tcggcgggaa gcaggggagg agtgggcgtg tcgtgtcggt gtcgacatcg tgcgggtcgg       360
     gggcggagcc cccggaaaaa ttttgggggt gaacgaagcg gcggcagcct gtttcgtcaa       420
     ctaaacgaag ccattttaag gaattcggcc actgacgccg cccctgcctt cgtaagatac       480
     gagcgctg                                                                488
//
ID   NonLTR-1_CR repbase; DNA   ; CHL   ; 761 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   NonLTR-1_CR is a non-LTR retrotransposon - a consensus sequence.
XX
KW   5-15 bp TSDs; non-LTR retrotransposon; NonLTR-1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-761
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-1_CR, a family of non-LTR retrotransposons from Chlamydomonas
RT   reinhardtii.";
RL   Repbase Reports 4(5), 135-135 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors several hundred copies of NonLTR-1_CR1. They
CC   are over 85% identical to the consensus sequence. NonLTR-1_CR
CC   elements are characterized by a high rate of the premature
CC   termination of their reverse transcription. Above 14% of all
CC   NonLTR-1_CR elements are shorter than 35 bp. Only a few
CC   elements are as long as the consensus sequence. Most likely,
CC   the consensus sequence represents the 3' noncoding terminus of
CC   an autonomous NonLTR-1_CR elements. Because of the frequent 5'
CC   truncations, a coding portion is unknown. NonLTR-1_CR elements
CC   are characterized by 5-15 bp target site duplications.
XX
SQ   Sequence 761 BP; 93 A; 279 C; 202 G; 93 A; 10 others;
     gtgtgcgcgt gcgtgtgcgt gcgtttgcgt gctcgtgggt ccgtgcgtgt gcgtgtgtgt        60
     tggtcccatc ggcgcacggc ctgtgctgat gacggggttc cgccacggcg mtgcccggtt       120
     ctgaacatgg ccaacccgcc ttcgcatcgc ccccatcgca ttcacgcatc catgccccag       180
     tgggcgcgca ctcatgggtg tgcgcgtccw sgccgrcagg gtwgcgaggg agccgttcgg       240
     cggcccgcgc cctgtccgca cncacccacc catcccgccg cttcgtctcc ccgcccatgc       300
     cgcggccgcc ccatctcacg ccgagcccat gcactcttgc cacttaacac tgccgccctc       360
     cctcctttct ccctctttct tcctttgtca agccgcgcgc gggatcccat agccttgtac       420
     tgccctgctt cgctacttcc gcgacttcta ctcatactcg ccgccttgcc atcccccaca       480
     tgtccgtcgc gcccggctgc tggacgcttc tacctggcgc tnctncgttc gcrtccaggt       540
     gagtatgtta gtatagattt gcaactagtt gggcgacggg gtccgcgcgc ggctcgcact       600
     gctgacatga cttcggagct gctctggact gctccttcca cctgcygcta cactgcccaa       660
     gcccgcccga ctacctatgg tgatgtacca cagctcgcat atgcggctgc agtttctcct       720
     tgcagcgcga ctgtttcctt acgggattgg ttcaaagtta a                           761
//
ID   MSAT-3A_CR  repbase; DNA   ; CHL   ; 92 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   MSAT-3A_CR is a minisatellite unit - a consensus.
XX
KW   Non-autonomous; MSAT; MSAT-3A_CR; MSAT-3_CR; satellite;
KW   Interspersed repeat; minisatellite; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-92
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-3_CR, a family of minisatellites from the green algae genome.";
RL   Repbase Reports 5(3), 58-58 (2005).
XX
CC   [1] Consensus
XX
CC   The MSAT-3A_CR is a subfamily of MSAT-3_CR minisatellite.
XX
SQ   Sequence 92 BP; 17 A; 32 C; 31 G; 17 A; 0 others;
     ggctggatac ggtgtatggc tcacatgcac gcgcacctcc gctcacgccc accgccgcat        60
     gaaggaaagc cgggggaacg cctggtgcgc cg                                      92
//
ID   hAT-N5_CR   repbase; DNA   ; CHL   ; 783 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   hAT-N5_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N5_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-783
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N5_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(4), 123-123 (2004).
XX
CC   [1] Consensus
XX
CC   About 30 copies of hAT-N5_CR are present in the C. reinhardtii
CC   genome. They are ~97% identical to the consensus sequence.
CC   hAT-N5_CR is characterized by 16-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 783 BP; 190 A; 193 C; 214 G; 190 A; 1 others;
     cacgcgggta ccactctggt cttttgctgt gtccaaactt tgacagcctg gtagacccaa        60
     caggtatcat ctgaccaggc cgccagcata cctacggctt cgtctcgttg tgtagtatac       120
     ggttactatg gtgcggagct gagcagatga aacctgaaag gccgtacggc tgcagccgtg       180
     catggggtgt gcagtgggac acgcaaatat tttcgtcgtg aaaactaaaa gcgtgatagc       240
     gtgatggata gcgtacgcac agtgtatgca ggatacgcaa tcgccactgt aaaaagaata       300
     ggcatcaaaa agttatgtgc acaattgtcc gggggggtgc atgctcctag ccaaacccgc       360
     acgctcggag ggctctggga gtcgcccgag gcaaatccta ccgcagtatt tagacgccgc       420
     ctttttgtag gtacataact tacatcatta gtggacatta gcgctcggca gaggacaaaa       480
     catgttggtc agggctcaag tcgcgaaatt gaccagagcc catatctcgc ataggcggta       540
     ttttgggcct gtatctagtg ccgtcgacta aggttcacct atakatgtca tccggacagc       600
     gtagggcgaa ttccagtaag tcctggcgag cgcgacattt agcatttcga cttcggctcc       660
     cgctcgagtt tatgcccgga aatcattcag ggaccttatt atatgtcaca tgataacatt       720
     tcggcagtct agggcattgg acacacgcag tccctaggga cttgccggag tggtacccgc       780
     gtg                                                                     783
//
ID   LTR3_CR     repbase; DNA   ; CHL   ; 357 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   LTR3_CR is a long terminal repeat of unknown LTR retrotransposon.
XX
KW   LTR Retrotransposon; Interspersed Repeat; 5-bp TSD; LTR3_CR; solo LTR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-357
RA   Kapitonov V.V., Jurka J.;
RT   "LTR3_CR, a long terminal repeat from the green algae genome.";
RL   Repbase Reports 4(5), 128-128 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors about 20 copies of LTR3_CR; they are 99%
CC   identical to the consensus sequence. LTR3_CR is a solo LTR.
CC   The LTR retrotransposon it was derived from is not known yet.
XX
SQ   Sequence 357 BP; 81 A; 100 C; 104 G; 81 A; 0 others;
     tgtaacggga gactcgctcc cttgtcaacc taggcgacaa tcctcttgtt acattggtgc        60
     gaaatgccag gagtcaccct gactgttgag gtcccaggat cgatcctgga tgggtgcatg       120
     ggtccgaact agtgcacaag agggttacac cctccttgcc ctgaggtgga tggcccgtga       180
     gagcgaggca acaacgcaac tgggccaaag gcagtaaacc caccccgcgc ctgcagtgag       240
     cctaaaaaca tctacggatg cgctggtggt ctcacgagga cgttcgcttc caggggggga       300
     ggactgtaac gggagactcg ctcccttgtc aacctaggcg acaatcctct tgttaca          357
//
ID   TE2-7a_CR   repbase; DNA   ; CHL   ; 743 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-7a_CR is a subfamily of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   AAC target site duplications; TE2-7_CR; TE2-7a_CR;
KW   Transposable element.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-743
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-7_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 142-142 (2004).
XX
CC   [1] Consensus
XX
CC   TE2-7a_CR is a subfamily of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-7a_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a 18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the AGCC
CC   3' termini.
XX
SQ   Sequence 743 BP; 146 A; 215 C; 233 G; 146 A; 1 others;
     acctaccgct acgcagtacc ccggcttgcc ccctccccct gtcccattgc gcaccattgc        60
     aggccaagta tgacgggaat tagcccctga gccgagctat cggctatggg ctcattccca       120
     acgtccagtt cagcgcagtc gcagttgtgc gaacggggtg ggaggggggt gcggggggag       180
     ggatgcccgg tgcccggact gtgcgagcca aggcgagaga gcgcgggcgg ggcgggggcg       240
     ggggcgggcg ggtggggggg tgggggcccc gagatgttgc acatgatttc gcgaaatcgt       300
     caccacgata gtatgcaccg ttgataccac aaaatcagcg ctgctgatgc atcgagatga       360
     agcaaacggc gtcgctgctt ttgccgatcg gcgagggcgc atgcgcttcg cactcacaat       420
     gtcttgtaaa atgtttattg ccttgaggta tcatcgtcta ccacaagtcc gcggctgaca       480
     agaattgcaa cccgatggcg ctatcgagcg ccgggatcct ccaatccctt cgcctctagt       540
     ctgacgtctt cctcgcgttt ccgcaaagtt atgcatcgct tgggacaaat tgaawggcgt       600
     attatttgca caagaactct ggctacgttc gggtttcccg acgtaactgc acataaaact       660
     ggaataaccg agggggcccc gcctgggact cgatgcgacc gcaatggctt ccgcccctcc       720
     cccttcgggg gaaggggcaa gcc                                               743
//
ID   hAT-N2_CR   repbase; DNA   ; CHL   ; 238 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   hAT-N2_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; Gulliver; hAT superfamily; hAT-N2_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-238
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N2_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 49-49 (2004).
XX
CC   [1] Consensus
XX
CC   About 100 copies of hAT-N2_CR are present in the C. reinhardtii
CC   genome. They are ~97% identical to the consensus sequence.
CC   hAT-N2_CR is characterized by 21 imperfect TIRs and 8-bp TSDs.
CC   hAT-N2_CR shares common termini with Gulliver.
XX
SQ   Sequence 238 BP; 49 A; 68 C; 63 G; 49 A; 0 others;
     cagggctcct atcttaatgt ctccagacat taattggcca ttttggccgt ttcctagaca        60
     ttcctcccgg gggctaatgt ctggggcgag actttgttgg cccgggtttg gggcgggttt       120
     tgtccgaatt cctatggaga agcccccaaa ccgccatgtg cccagacaaa agacggcggc       180
     cacccggccg tttttgtctg gagctagaca ttaccccgaa aacaagatac gacccctg         238
//
ID   L1-5_CR     repbase; DNA   ; CHL   ; 852 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   L1-5_CR is a 3' terminal portion of a putative L1-like non-LTR
DE   retrotransposon - a consensus.
XX
KW   L1; L1-5_CR; non-LTR retrotransposon; putative L1 superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-852
RA   Kapitonov V.V., Jurka J.;
RT   "L1-5_CR, a family of L1-like non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 5(3), 50-50 (2005).
XX
CC   [1] Consensus
XX
CC   The L1-5_CR elements are flanked by 5-10-bp target site duplications.
CC   There are several hundred copies of L1-5_CR present in the genome.
CC   They are massively truncated at 5'. Many elements are just 20-50 bp
CC   long 3' terminal portions. The consensus is not complete at its
CC   5' end.
XX
SQ   Sequence 852 BP; 115 A; 300 C; 214 G; 115 A; 0 others;
     tctgggggtg tagttcatac gcatgtggca cttatgcatg catgcttgcc attgcatccc        60
     ccacccggcc ggcgctgcta ccctgtgcag ccgccggttt tgttcgacgg gtgtggggaa       120
     ccgcattgcg gtccgccccg tcgattgtcc tgttttgtcc tgtttaaggg gtttattatg       180
     gtgccttgct gcgtgttgcc tgcgtaccag actgcagcca tgcccacgta gctcactgca       240
     ttcatgccca catggcccat gccgcgtgca gtaccgccgg gatgagccgt gcagccatcg       300
     cgctgtcatc actattacgc ggcctccccg tttccagtac ttgcattgcc acacgtattc       360
     attcctcccc atttacatac ttgctttccg ctccgtccac tccgcctcca tagttccgtt       420
     ccagcccgcg ccagccccaa ccgcagcgac agccagccgc ccagcccgcg gttacttgct       480
     gtgctgtttt gcttcctgtc tggcccgctg cttccttccc ggtttcttac gcttccactc       540
     actccctccc tcacatgtgc tgctggacga cggtggcgct ggtgttttcc aggttggttt       600
     cggatgccgc gcgccccgca gctccgctcc gcgccagccc gccagccgtc cgacagccta       660
     gccatcgcaa cctggttata tcagtgatgg gtcggcggcg ctcctctatt gcccgtggcg       720
     tttaccgtct ggatgaggta acatgtctgc tgtgaccgcc tcctgctaac cggccttcta       780
     tgcgtgctag cgactacaac ttctcttcgt gtcgcgcaca ttcgcgttcg catttcgaca       840
     gcactccgct aa                                                           852
//
ID   NonLTR-4_CR repbase; DNA   ; CHL   ; 588 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   NonLTR-4_CR is a 3' terminal portion of a non-LTR retrotransposon - a
DE   consensus.
XX
KW   Interspersed repeat; non-LTR retrotransposon; NonLTR-4_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-588
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-4_CR, a family of non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 5(3), 65-65 (2005).
XX
CC   [1] Consensus
XX
CC   The NonLTR-4_CR elements are flanked by 5-15 bp target site
CC   duplications. 5'-CT is always a 5' terminus of any target site
CC   duplication. The consensus is not complete at its 5' end. Because
CC   of frequent 5' truncations, a coding portion is unknown.
CC   NonLTR-4_CR elements are >95% identical to the consensus sequence.
XX
SQ   Sequence 588 BP; 149 A; 133 C; 182 G; 149 A; 0 others;
     gagtccacat ccaagatacg gcggctcttg aggacgactt acttgacttg attgtcctac        60
     gggaacactt atggctgaca actaagccgc atcatacaat tgaacaagct gtctgggatg       120
     tagtctgcat ggcagcaacc tcggcgatgg aatatggtag gagattgcta tatgcagcca       180
     ggaacgagca aggagtgatc gatgggaacg cagtaatggc gcgcatcaaa tcgcaagtta       240
     tagcagactt ctggtctagg ttacaatcgt atgtgtgtct tggtgccaaa ccgagggggt       300
     gggaccgagt ctcgccaggc cacccttgga ttgagcgaag agcagatgga agtatgaagc       360
     tgaacagacc acgaagtgtc ataatggaag aggaggtgga gtgatggcac ctagtaacat       420
     gttcggtatg gcgggaggag cgtcctatgg gagcaagcct actagagcta gagtaggccg       480
     acggcgctgc aggcggcacg cccctggggt ccagagcagg gtgttcgttc tccacgtcac       540
     tggctcgtga actgcgtcag caggtccctc ttgtaaccaa tgcaatct                    588
//
ID   MSAT-1D_CR  repbase; DNA   ; CHL   ; 120 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   MSAT-1D_CR is a minisatellite unit - a consensus.
XX
KW   Non-autonomous; MSAT; MSAT-1D_CR; MSAT-1_CR; satellite; simple repeat;
KW   Interspersed repeat; minisatellite; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-120
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-1_CR, a family of minisatellites from the green algae genome.";
RL   Repbase Reports 5(3), 55-55 (2005).
XX
CC   [1] Consensus
XX
CC   The MSAT-1D_CR is a subfamily of MSAT-1_CR minisatellite.
XX
SQ   Sequence 120 BP; 18 A; 27 C; 68 G; 18 A; 0 others;
     ggggggcgca ggcgaaggcg gctccggcga gggaggcgcg gggctaggag gctccgggct        60
     gggaggctcc ggcgagggag gagcaggcga aggtggctcc ggcgagggag gggcaggcga       120
//
ID   hAT-N8_CR   repbase; DNA   ; CHL   ; 646 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   hAT-N8_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N8_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-646
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N8_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(5), 145-145 (2004).
XX
CC   [1] Consensus
XX
CC   ~20 copies of hAT-N8_CR are present in the C. reinhardtii; they
CC   are ~99% identical to the consensus sequence. The hAT-N8_CR
CC   family is characterized by 14-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 646 BP; 142 A; 182 C; 170 G; 142 A; 0 others;
     cacgcgggta ccaccaggcg gctggatggg gtctacggga gccccttctt ccgcgggcct        60
     tttcactatg agcaataact cgtacaagga tgctgacccg acctaccccc cacaattcga       120
     tagcgctcta tccgcctggc tagttagatg tcttgtacga gctattgccc gtggtgaaaa       180
     ctgggctgcc gtccgggggg tgcgttttcc cagccaaacc cgcacgttgg acgttgcccc       240
     ggggcaaatc ctaccgcacg gattagacac cgcctttctg taggtacata accaacatca       300
     tcatcagcca gaagtggtcg gcaaaggtcc aaattatgct tatcggggct caagtcgcga       360
     aattgaccga agcccatatc tcgcatatgc gctgtttggg gcctgaatct attgccgtcg       420
     acattaattc tcgtatagat gtaatcaaaa tagcttcagg ctaagttggc ggggtcctgg       480
     cgagcgcgac atatagcatt tcaacttgag ctctcgctca aaattatgcc cgagcaccat       540
     ccagggacct tattatgtgt aatgggatgt caattcatgg tcggggcgac agtctgggca       600
     tagaccttgc gatcccgccc ttgacccccg gagtggtacc cgcgtg                      646
//
ID   Mariner-N2_CR repbase; DNA   ; CHL   ; 519 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N2_CR is a family of nonautonomous Mariner DNA transposons - a
DE   consensus sequence.
XX
KW   mariner superfamily; Mariner-N2_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-519
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N2_CR, a family of nonautonomous Mariner transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 130-130 (2004).
XX
CC   [1] Consensus
XX
CC   Mariner-N2_CR is a family of nonautonomous transposons. The
CC   consensus sequence is less than 5% divergent from
CC   Mariner-N2_CR copies. Features of Mariner-N2_CRs include 27-bp
CC   terminal inverted repeats and TA target-site duplications.
XX
SQ   Sequence 519 BP; 116 A; 134 C; 146 G; 116 A; 4 others;
     ccgtagtgat acaaaggttt cgggttttga atgttcggga cagggtacaa atatatgttg        60
     aaagttattc gggaaattaa atattcggga cggccgccgg cgaaaaatgc aagtctgatc       120
     cagaatttcg ggactcccgc cggcagtccg gccaggccgc cttcatgccc cggacacgca       180
     tgcgaccgtg tgtcgtgcac aatggccccg tggctcaggc tttcgtgcac gccaagtgta       240
     atgctacray rrcagtcctt tagtatgtca cttgattgca ctccgtgcat cggtgcatgg       300
     cgcattcgaa gtaaggccgg cgtgctggcc ggcgtgtggt ggtaagaccc ccttgacccc       360
     ctccaggcgc gcgcagcgcg cgctccggaa aatagtatat ccgaaaggtg atatttattt       420
     tcgggaccga gaaggcgaaa taattaatta aataggttcg ggagcggatt cgggaccgcc       480
     tcccgaactt tgctccccga aacctttgta tcactacgg                              519
//
ID   NonLTR-2_CR repbase; DNA   ; CHL   ; 1207 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   NonLTR-2_CR is a 3' terminal portion of a non-LTR retrotransposon - a
DE   consensus.
XX
KW   Interspersed repeat; non-LTR retrotransposon; NonLTR-2_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1207
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-2_CR, a family of non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 5(3), 63-63 (2005).
XX
CC   [1] Consensus
XX
CC   The NonLTR-2_CR elements are flanked by 5-10-bp target site
CC   duplications.
CC   The consensus is not complete at its 5' end. NonLTR-2_CR elements are
CC   ~95% identical to the consensus sequence.
XX
SQ   Sequence 1207 BP; 267 A; 365 C; 385 G; 267 A; 0 others;
     tgcagccgca aacacaacac aacacaaccg ccacaaaatg ggcaaacacg gtcaccgtgt        60
     aaacaaaact acgacccaac tcgctgatca acctagggca gcgtggcgag cgtcccagga       120
     atcgcctcaa tcgtctctat cgcactcagg acactcgccg gagatggcga gcagcggacc       180
     cgagcgtcgg ctggacactc acagcagttc cagcagcagt ggagacaggc aggcctccgg       240
     acagcacgct acttgcagcc cgatgagcat cggcaccgtc gactcgagcg agcagcccac       300
     atccaagcgc gctgccgact ggttacggag catcaaactt cggcttcagt tctcgaccag       360
     cctgatcgtg gacgcactgg caaacactga cacactccca gcatcctcaa tttgttctca       420
     ggagttcgag cgtgcgctgg agcagttcga gctacaggtc gcagaacttg tatttagcgc       480
     cccaaggcag gcaccggtgc cacacgcctc ggccaacgag gcacagaccg ccgcacccgc       540
     ggcggagcgg cggcccaacg acctcgcagt gctgcgggta caggtggagg agcaacgggc       600
     tgcgctggaa gccgtcaaac gctccctcgc ccgcgtgggg gatgcggccg ctgtggacga       660
     gagcaagatc ctgctgaagt ctgtcagcgg cgagctgcta gagcgcatcc gggcgtccgg       720
     gaacctagag gcggttgcta gcacgagtgg gacgtcggtg agcgggcgct atgtccgtgc       780
     gtggcaatcg gcagggcggg aggtgtggaa cgtcgtggtg atggtgacgc cccaggaacg       840
     cagcgcattg atcagggccg cacgcctggt ccgcagcaca ggtgtggtgg tggcgcctta       900
     cctgacgtcc gtagggtgtg cactgcgcaa ggagcaactc ggagctttcg aagggtttcg       960
     agcagcaggg ctgaagcccc gatggaaggg aggggcgggc attcggtgcc gaggcaccta      1020
     atcacctagg ctgacgggct agcagttgac gtagttggca ttgagtagta cagtcgaaca      1080
     cgcctaactt cgttgcgcaa agtaagtttc ccggcgttat aagggcccac cggcccgggc      1140
     cactggtact tacggggaca ggatagcacg catgctcgtg cacaccacct tgtaaccaac      1200
     aacaaca                                                                1207
//
ID   Copia1-I_CR repbase; DNA   ; CHL   ; 6068 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Internal portion of the Copia1_CR retrotransposon.
XX
KW   5-bp TSDs; Copia1-I_CR; Copia1-LTR_CR; LTR retrotransposon;
KW   COPIA superfamily; endonuclease; protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6068
RA   Kapitonov V.V., Jurka J.;
RT   "Copia1_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 102-102 (2004).
XX
CC   [1] Consensus
XX
CC   Copia1-I_CR is an internal portion of the Copia1-CR LTR
CC   retrotransposon, whose LTR is deposited in Repbase as
CC   Copia1-LTR_CR. Copia1-I encodes a 1627 Copia1_CRp polyprotein
CC   (pos. 435-5315) composed of the C2HC zinc finger, protease,
CC   endonuclease, reverse transcriptase, RNase H. The PBS is complementary
CC   to an internal portion of tRNA Met.
XX
SQ   Sequence 6068 BP; 1100 A; 1660 C; 2241 G; 1100 A; 0 others;
     ggttatgagc cccgtgtacg gcatttccgg cacggttatc ttcagaggtt gaggtcgtca        60
     gttcaatgcc tggacgctac gttaggggcg gggtagcctc ggagtagttt ggcaatgtgt       120
     aagtgctgcg gataggcaag agtgccttgc agcaggacac taataaagtg acgatgagac       180
     gctgaggacc cggatcgaat ggtgtatcgg tcgcgggggg gtgttgtata tcgacctcta       240
     ccccattctc gctatatcag gggatggaat gactcgcaag taataggctc tgttgagccg       300
     gcgcttttgg ggtcattcca gaatacaaca ggttatgagc cccgcgctct tgcggtggaa       360
     tagcgatatc tctcttttga ttacttttcg ggcttcagcc taaatctaga gtagtgtagc       420
     cgccttcaac aaccatggcc ggcaaactca ttaagccgtc gcaagtctcc gagctgcgtg       480
     ctggggacaa ggatgccttc tgggactggg tgtcgaacct taagatagtg cttaagaaca       540
     atagaatgct agacgtggtc atgcccggaa ttggagtgga cggcaacggc aacttcgacg       600
     cggaggacct gaagctcgat gcagatgctc gggacttcat tgagagcaag gtggactcaa       660
     cgcttcgcct ggccctgacc aatgcgggca cggccaaggc agcttacgac accatctacg       720
     ccaagttcaa cccggccacc gtggcgcgca aggccgagct gtctcggcag cttaacatgc       780
     tgcggatgca gcggggcgag tccgttgcgg tgtactgcgc tcgtgcccgc aagctggctc       840
     acgagctgct ggagctggag attatcatga aggagctgac ggagggcgag gacattctgg       900
     cggcgtcgga gtcctctgag accaatctgg tcatgtgggt gctgacgggc ctgccggaaa       960
     gctgggagaa cttcaaggac cggatgatgg actcagctag ctccactggc gacctgggcg      1020
     tcaccatgga ccaactgcag agcaagatgg agaaccggga gcagcgctac caggacggtt      1080
     caggagtggg cgtgtcggcg agcgctgttg cggctatcca ggtgccgccg gcacctatct      1140
     acccggcagc gcagagccag gaggaccagg ttgcggtgat tgcagctgca ctgaaccgcc      1200
     tgggcttcca acctcgcggg gccggccacg gcggcaacaa cggcggtgga gaccgccccc      1260
     gcaaggacat gttgcgggta aagtgttacc gctgcaagca gtttgggcac tatgccgata      1320
     agtgtccgca gggacagcag cagcagggtc agctggggct gggcggtggt gccggcggca      1380
     gcggatcggg acaggtgcct ccactggtcg cggcgctggc gcagctgcag gggctgtacg      1440
     cctacatggg tggtgcgcct cagaaggcgg cgccaatgat gcagcaaccg gcgcagacac      1500
     cgcaggtggc agcgatggcg gcggctgcac cagctgtggc cgctccagcg gcggcagcgg      1560
     cggcggcggc gacgggggtt gccccgcagc agggcggcgc tgagagggtg cgaacgtacc      1620
     gcatgttcat gatgatggcg cagtcgcagg cgcagactct gccgcacggc ccatctgact      1680
     ggctgttgga ctcgggctgc tccagccccg tcagctatga ccccagcgac ctgttcgacc      1740
     tgaggccgct gctggagccc accttcgtgc aggtcgctga cggccggccg tgcgctgcca      1800
     ctcacatcgg caacatgatc ctgcggacca gcctgggcaa cgcggaggcg gacgccatga      1860
     tgaaggacgt gctgctggtg ccggagcttg gcgtcaaggc gctatcaatc agcgccatgg      1920
     cgagggcggg cgtggagacc accatgggca acgctggagc cgtctgcaag tcgcgcgacg      1980
     gtgaggtggt gatgcgcggg cggctgtgcc cgcggtcggg cgtgtatgtg atcagcgggc      2040
     gcgcgctgca gccgtcggcg gagcagtggg cgcagttcca gcagtgacgg ggtgacccgt      2100
     cgcctccgcc gcatcaggag gatcaggcag tgggcggagc ggcgggttgc tgggctgtgg      2160
     tggacaggtc gggagagctg tggcgtgagc tgcaagcggc gcggtctcgg gcggacatgc      2220
     tggcggtgga ccgtatccac cgctgctttg gccacttggg acatacgcgc atgctgcagc      2280
     taccggatgt ggtgtcaggc ctgccggtga cgcgcagtca gatacagctg tgggcggcca      2340
     cgcgtgggcg gtgcgacgcg tgtgggcttg gcaagtcagc gcggcggcgg ttgagccgcc      2400
     aggaccagcc gcggggtgcg acagcgcccc tgcagctggt gcacacggat gtgtgcgggc      2460
     cgctgccggc ggcagcatgt ggcagcaagt acatagtcac tgtcgtggat gagtacagca      2520
     agtactcggt gctgcgcttc acgcgcgacc gcgaaacagt gccttatgtg ctgcagtcag      2580
     tgctggtgct catggagacg cagtgcgcgc cgctgcgggt caaggagatc aggtcagacc      2640
     ggggagggga gtacgtcggc agcgtgctgg cggacttctg cgcagcgaag ggcatcctgc      2700
     agaacttctc agcgccgtac acgccgcagc tgaacggagt agcggagcgg ctgaaccagt      2760
     cgctgcaacg ggcggggcga gccatgctgg tggatagcaa gctggacgtc aagtactggc      2820
     gactcgcagc tgaggccgct aacgcggtgc ggctgcggtc gccggtgcgt gggctggcag      2880
     cgacaccgca tcagctgttc acgggtgtca agcccgacgc ctcgcacatg catgtcttcg      2940
     gcagcaaggt gtacgtgcac acgccggagc cccaacgcga ccacaagttc tcgccaacag      3000
     gccgcgccgg tcgcttcatc gggtgggagc cggatggcaa ctaccgtgtg ttagtggaca      3060
     gcaagctggt ggtgtcgcgg gatgtggttt tcgatgagga cagggctgca aacgcggggg      3120
     agccggcaac ggcgacagcg gcggcgtcag cgccgccact ggacctgcgg gtagacagct      3180
     cagacagtga caacgacagc ccgccggcgg aggcggcggg tgtgtcaggc ggtccgccgg      3240
     ccgggcagtc gaatgagcag gggcggcgca acacgtcgca gcagggcgca cgggagcagc      3300
     gggaagcagc tccgtcggcg caggagctgc atgtggagcg acagccgggc tctggagagg      3360
     cggcggcgga ggcatcaacc agtgcggtgg cgtcggagcc gcacgcgcgg cggcggcggc      3420
     ggcgcaagcc gctgaagccg ccggcgcaag gtggagctgc agcaggagag gcaacggcag      3480
     ccgggggagc gccgaacctg gcggcggcga cgccgccgga caaggcggag cgcggcggtg      3540
     gtgttccagc caccgcgctg ccccctcagc cgaggcgctc agaccgcagc cgcgccgcac      3600
     cagtgcgcct aggcttctca gccattgtgg tggtgagggg agcgttggtg caggtgcttg      3660
     cggcagcagt caaggggccg gtagggcagg atctgccggg cggcgacgag cccaccttcg      3720
     agcaggcgaa gcagcgcccg gactggcccc tgtggcaggc agcaatccaa gaggagctgg      3780
     actcgctcag gtcgctggag gtgtttcagc cggcgcaccc gccagctggc gccaaggcgc      3840
     tggccgtgcg ctgggtgctc aaggtcaagc gtgacgccaa cggcaaggcg gcgcggtgga      3900
     aggcgcgcct ggtggtgaag ggctatcagc agcgaccagg ccgggacttc ggggagacat      3960
     tcgcgcctac cgggcgcctc gcgtcactcc gtttccttct ggcaatcgtg gctgctcgca      4020
     acctggagct gcatcagatc gacgtcaaga ccgccttcct acacggtcgc gtggaggagg      4080
     agatctacgc ggacctgccg ccgggctgcg acctaggtga ctcggaactc aagctgctgc      4140
     tgcgcaagtc gctgtacgga ctacggcagg cgccgcgggc ctggtacggg aagctcaagg      4200
     agactctgga gcgcatgggc ttcgtggagt cggatgccga tccgggtctg ttcgtgctgt      4260
     gggctgagca gggcatcttg ttcgtgctgg tgcacgtgga cgacatgctg atggcggcgg      4320
     agctactgcc gctgatggac agcaccaaga aggcgctgaa cggtcacttc gccatcaccg      4380
     accttggcga ggcgagcttc tacctgggca tgaggatcga ccgcgaccgc gccaaccgca      4440
     ccatcaagct gtcacaggag cgctacacgc tggacctgct ggaggcgcac ggcatgtcgg      4500
     agtccaagcc ggtggacacg cctatgactg tgggcacgcc gctgatgcga gcggacaagg      4560
     ggggcggcga gctgcttggc ctgggtgagg cgcagcgcta ccggggcatc gtgggcagcc      4620
     tgctctacct agccaactgc acgcggccgg aaatctctct ggccgtgggg acgctggcgc      4680
     gcttcatggc tgagccgact gaggagcacc tgaaggcggc gaagcgggtg ctgcgctacc      4740
     tcaagggcac gccggggacg gggctagtgt acggcggaca cgggctggtg ctggcgggct      4800
     atgcggagcc gccatcggat gcggagctgt cagcggagtc ggcggtggag ctgaagctgg      4860
     cggggtacgc tgacgcggac tacgctggct gccccaacac tcgccgctcg accactggct      4920
     acgtcttcac gctcaacggc gccgccatca gctggcagtc caagctgcag cctactgtgg      4980
     cgtgctcaac tgtggaggcg gagtacatgg ccgccggttc agcgacacgt gaggcgctgt      5040
     ggctacggaa gctgggcggt gacttcggtg tgttgggctc agggcccacg gtactgctgg      5100
     gcgacaacca gggcgccatc tcgctgacgc gcaacccgtt gcactcagcg cagaccaagc      5160
     acatcgacgt gatgtaccac ttcgtgcgcg agcgtgtggc gatgggcgac ctggcggtgg      5220
     agtacgtgcc gacgagtgag atggtggcgg atgtgctgac gaagccgctg gatgcggtga      5280
     agttcaagaa gttccgtggg gagcttgggc tcaagtgaag cgtgttaggt tagggttgat      5340
     ttctgtagag ttggaggtta ggtgatatgt tgctggtact gcaattggac acggacggtt      5400
     gttacggacg ttagtcgtga tatgggaata gggacgtaat tggtggatgg aacgggctaa      5460
     tgactaatga caattgcggc ggaaaccatg cggattgact tgacccaaca ttcatttgac      5520
     ggacttgcag tgtgatcgca gcgcggacgc gcgcacagtg tgatatgctt ctgacggatt      5580
     ggtgttgaga gcgttacgtg tgggcacatg cgtgaatgcc attattctta ggcgtgctta      5640
     gtgcatgctt cacgtggccg agggttgtcg gctggcagca gtatgtttcg agctggttgt      5700
     ggctgacttg ctgttgtgca tatgaaatcc acgtggtacg gtgcggtgtg ctatgcccaa      5760
     acagagacat gcagggcgaa ctgcatggcg tgagactact gggctgtcat gagtagtcgc      5820
     ccaaacagag gcgcacgggg ttaagcgtgt gacgaatgga agatatgccg ggtgcctgat      5880
     cagctggagg tatgtcgagg ctgtagcggg tggtttaact cgttgcggta acggtagtga      5940
     cgtggtgtag cgttgctgct tgagctggtg cgctggctgt gcgctggatg gctcaatggt      6000
     gatttgcgat aatatttcag gttacactta gtaatgtggc tgcgtggaat gggcagcccg      6060
     cgggggag                                                               6068
//
ID   TE2-4_CR    repbase; DNA   ; CHL   ; 1022 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-4_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   AAC target site duplications; TE2-4_CR; Transposable element.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1022
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-4_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 139-139 (2004).
XX
CC   [1] Consensus
XX
CC   TE2-4_CR is a family of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-4_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a 18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the AGCC
CC   3' termini.
XX
SQ   Sequence 1022 BP; 154 A; 273 C; 337 G; 154 A; 12 others;
     ctccccgctc cgcagcgcga tggctcgccc tttgtgcgga tttctcgctt gaggggaagt        60
     gcgcaggcga ggcttcagcg ctagrrgcgt gtagccgagg ctggctgtga gcgcaaggtg       120
     ttrgatagcg atccctggat tgacagacgt gcaccagagc attcaagcgg ggaaagttac       180
     agcgtgctga gctggtaggc gtgacgaggc aggagacagc acaagtgtgc gctgcgcgcg       240
     cagggggggg gcggaaatcc aagttagtgc gtgtgttttg ggtgggtaca aatctaggat       300
     ctaggatgct gacacgccct agcgctggtg ctgcgcttcc tgctgttgcc tgtgcgtgca       360
     ctgcacttgc mracttgcta tgcgacgtca gctatggtgg gggctggagg cgagattcag       420
     gcgcattcac acgcccaggc ggcggcccac gggcaacatc gctctgctgg gtcgcctcgg       480
     ccttgcaatt tcgcgctcgc gctgcgcttc ctgcccttgc ctgtgcgtgc actgcacttg       540
     tcatctatgc cacgttggct atggtagggr ccgggggcga ggttcaggcg cgttgcagca       600
     gcacggttgc ggctccacac gccccgkcgg cggcggcggc ggcccacggg caacaccgct       660
     ccgctgggtc gacattcttc gacttcggct tggctttggc tttggctttg gctttggctc       720
     tggctttggc tttggcttgc ggctttggct taggctaggc ttgtggcttc ntgcctttgg       780
     cttcgctggg ctttggcttg gtgatgggtc cacatcaagg ccttggactt ggcctgggag       840
     gtgcgcgttt tctaccagtt tttctgtgtt gcatgttttc aaaggtttct tsgcttggca       900
     aatacaccaa agctgccgct ayttgcatac angctttcac gaaaacgcaa aaacagmgaa       960
     caaccctaat gtatggttct ggtcgaggac taaggctgtc gccccccttt ggggggcgag      1020
     cc                                                                     1022
//
ID   SINEX-3_CR  repbase; DNA   ; CHL   ; 507 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   SINEX-3_CR is a putative nonautonomous non-LTR retrotransposon - a
DE   consensus.
XX
KW   L1-1_CR; SINE; SINEX-3_CR; non-LTR retrotransposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-507
RA   Kapitonov V.V., Jurka J.;
RT   "SINEX-3_CR, a putative SINE-like non-LTR retrotransposon from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 47-47 (2004).
XX
CC   [1] Consensus
XX
CC   About 30 copies of SINEX-3_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   The 125-bp 3' terminus of SINE-3_CR is 79% identical to the
CC   L1-1_CR 3' terminus. Target site duplications are not present.
XX
SQ   Sequence 507 BP; 110 A; 116 C; 148 G; 110 A; 0 others;
     gggggggtcg tctaaatggt taagacactc aagccgattt cgttaaggct tcgagagatc        60
     ctgggttcga atcccggtca ccccaccagg aagggccctg gtttaccaaa acccatccac       120
     accttggtgg tgtgtagacc ccccctgtgg tgcagggagt ctctggggta caaggctgga       180
     gctctgggcc tgcaactgga gagctttcaa gttcaagatc caagattcaa gtggagctct       240
     gggcctgtca actggagagc tctagatgat ctgtgtggtc atggcagtgg ctgtagttgt       300
     cacctagctg ttgagaactc cagtaggtgt gtggtgtcac ctggctgttg aggtttccag       360
     taggtgtgtg gtggaacaaa aacttctctt ctcttctctg atctctggcc ctatcgaggt       420
     tctgtgatat gatccaggct gccttggcag tagggtggta gtgcgtctac caccgcaacc       480
     ttgtaaggat gactttaaaa aaaaaaa                                           507
//
ID   hAT-N4_CR   repbase; DNA   ; CHL   ; 645 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   hAT-N4_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N4_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-645
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N4_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(4), 122-122 (2004).
XX
CC   [1] Consensus
XX
CC   About 50 copies of hAT-N4_CR are present in the C. reinhardtii
CC   genome. They are ~95% identical to the consensus sequence.
CC   hAT-N4_CR is characterized by 16-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 645 BP; 142 A; 174 C; 191 G; 142 A; 0 others;
     caagcgggtc ccactccagg aaaaagcgtg tccccaggga ggcgcccacg ggatggcacc        60
     aaaacccctt ggtagattgt ccttcaagga agccgccacg tctacggact catctcgtcg       120
     tcatctcggc gcctatggct tgctgatgct tgaaggacaa tctaccaggg gggtttcacc       180
     gcgtgccgtc cggggggtgc gtttccccag ccaaacccgc acgccgagga ggccaggaga       240
     cgtcgccccg agaaaaatgc agagcgggat acagactccg ccacttaatg tatatgttac       300
     atgcaatctg ttggagcaat agcgcttgac agcaggctaa aacgtgctcg tcgaggctca       360
     agtcgcgaaa ttgaccgaag ccaacatcct acataggcgt tgttttcggg ctttatcgat       420
     tgccgtcaac acagatatat gcataggtgt agttaggcta ctgtctggcc tggtatggcg       480
     tgtcctggcg aacgcgacat ttagatgttc gaggtcggcc ccggctcgat tcaatgcccc       540
     cgggttactc taatgacctt atgtgtggta taagatgcta taggaaaggt attgggctgg       600
     ggacacgacc ggcccgtagg gccgtgcgcg agtgggaccc gcttg                       645
//
ID   DNA-3-7_CR  repbase; DNA   ; CHL   ; 857 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   DNA-3-7_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   7-bp TSD; DNA transposon; DNA-3-7_CR; unclassified superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-857
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-3-7_CR, a family of nonautonomous DNA transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 33-33 (2004).
XX
CC   [1] Consensus
XX
CC   100 copies of DNA-3-7_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   DNA-3-7_CR is characterized by 13-bp TIRs and 7-bp TSDs.
XX
SQ   Sequence 857 BP; 188 A; 264 C; 215 G; 188 A; 0 others;
     cagggggggg gtacgaacta aacctccaga ccccatgtcc caaaacctcc cgaccccccc        60
     tccggaccga ccgaccgacc cccaccaccg tgcaacccct caaaaccccc tcaaaaccct       120
     ttggttttta gccaggtcgg tgtcaatcga ctgctctcgg cgagctctac aattgtatac       180
     ctccggttca gctggaggca caacttgact ggcagccatg ccacacatgt ccatgtgtcc       240
     atggccgacc accgaccctt ctgtcagact accggggcgt gcgcttaagc ttacaattgc       300
     gctgtacata tgatgtttgg gattgtgtgc cggaagagat tggtcgactt tctcccggga       360
     tcatgtgaag aatcccggga ttcatgtcac gctcgatggc cggcggcagc cttgtcgcca       420
     tgacccacac gaagccttgg ccgttacacg ttagcatcag atcgcatagt ctccatgaca       480
     ccagtgagag acgctcgagt ggggctctac gctactacga tgccgatgtg gacggacatg       540
     cggccgcttt ccagaggcca aacgttctgc aaatgcttta gtatgtgcat gctaatgtgt       600
     gctagtactt gtgctaatgg gcggagcgtt tagaggggcg tttagggcgc agagacgaaa       660
     tctggcagtc ccacccacat ccgcgtgacg aaaccttggg gacccccaac cccgacgacc       720
     gaccctgaac tttgagggcc cataactttg caattactac cctgattgaa actctgaaag       780
     tggatttgga gtcctctcgt caagctcttt cgttttagaa catggggcct ttcccagtcg       840
     aaactacccc ccccctg                                                      857
//
ID   TE2-3_CR    repbase; DNA   ; CHL   ; 542 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-3_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   AAC target site duplications; TE2-3_CR; Transposable element.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-542
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-3_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 138-138 (2004).
XX
CC   [1] Consensus
XX
CC   TE2-3_CR is a family of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-3_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a 18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the AGCC
CC   3' termini.
XX
SQ   Sequence 542 BP; 115 A; 125 C; 178 G; 115 A; 0 others;
     ctcccagctt cgcagcgcga tggctcgccc tttgtggggc tgcgaagtca ggcactgtat        60
     agtttgggat tgaaacgcgc ggcatgcagg tgcaaggagt tatacagcgt gttgaactgg       120
     caggagagga tgtgcagcac caggtgacag gagacaggaa cgacaggagt cagggggaga       180
     caggaggcga caggaggcag ggggaggcag gagagacagg aggggacacg gcacgggcag       240
     ggcaaggatt aacacaggtt gaggattccg ctttgtggct ttctgctttc agcttgactt       300
     tatggctctt atggctcttt gagcggctct ctgagcggcg gcggcctcgt ggcctggacg       360
     gtgcacttta catactagtt tttctgtgtc gcatgccttc aagggttttt gcacttggca       420
     aatactctgt tacagcctct attcttgtcc atgttctacc aaaaagcgca aaactggaca       480
     gaaccctaat gtaaggttct tgccgaggac tatggctgtc gccccccttt ggggggcgag       540
     cc                                                                      542
//
ID   hAT-N10_CR  repbase; DNA   ; CHL   ; 574 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   hAT-N10_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N10_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-574
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N7_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(5), 144-144 (2004).
XX
CC   [1] Consensus
XX
CC   A few copies of hAT-N10_CR are present in the C. reinhardtii;
CC   they are ~95% identical to the consensus sequence. hAT-N10_CR
CC   is characterized by 11-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 574 BP; 89 A; 191 C; 160 G; 89 A; 1 others;
     cagtgtttcg gcaagttttt agggccttta ctttcctagt gcacgggtgg gcattggggt        60
     gcggtgactt taatttccaa tgcccaccag ggggcgcagc ccccccacct cgtacggggg       120
     gtccgggggg cggaagcccc ccggaaaatt ttttcactat gggtatcaaa atacgcgtat       180
     tttcgtatgt catrccccta gtcctcgagc agcgtttgtg ctagccgaca aggcatcacg       240
     catgcgtgcg cacgccacac atcttctctt catactgcca caccgcaact gatgagtctt       300
     tccccatcct gccgtgtgcc catccgggcg tgcccgtcgc cccggccccg ccggtccggc       360
     ccggccccgg cgcgcccctc tcccttcctg gcgcgtgcac cgggccgggg atttcgcagg       420
     atgggtgggc acttgagggg tcagggaatt attttttata gtgcccaccg ggcactgggg       480
     ctccaggcat ttaattttcc ggtgcccgcc ctccgggccc gacttatttt tccagtgccc       540
     acgtgggcac taatgcccac ctcccgaaac actg                                   574
//
ID   Mariner-N5_CR repbase; DNA   ; CHL   ; 742 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N5_CR is a family of nonautonomous Mariner DNA transposons - a
DE   consensus sequence.
XX
KW   mariner superfamily; Mariner-N5_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-742
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N5_CR, a family of nonautonomous Mariner transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 133-133 (2004).
XX
CC   [1] Consensus
XX
CC   Mariner-N5_CR is a family of nonautonomous transposons. The
CC   consensus sequence is ledd than 5% divergent from
CC   Mariner-N5_CR copies. Features of Mariner-N5_CRs include 28-bp
CC   terminal inverted repeats and TA target-site duplications.
XX
SQ   Sequence 742 BP; 160 A; 218 C; 176 G; 160 A; 22 others;
     ccgtagtgct acaaaggttt cggcgttcga aatttcggcg aggcgttgcc gaartgctgg        60
     aaytattang atatttttta atttcggggg gccgccggrt tatttaacam waatgttttt       120
     aagttcggcg gcccgcccac agccgcggac ggggcccacg gaaggggcct agcaagcact       180
     gcatcaaggg gctacccgct accacacgcg tgtcctactg cgccacgcgc gtgtcctact       240
     gttccagcag tacggtaccg gtgctgtgca ractggcaac ccctgctcag ctgtcaccgc       300
     acacacaccg cacaccgcgc ttcccacacc gcacaccgcg ctatgaaacc cccagcaacy       360
     cacccagcaa gcactaattc atctccagcr cgctcgtttg rgtcgtggtc cttcggcagc       420
     acaggcatga aggccctgat ggcagtttgt ttgctcattt ttrswykmtt ggtcgattgy       480
     gctacttaca actagtatat agaaaatatc ggttctctgc agcagagcga ctagataagc       540
     ttaagataag gtcgtgcgtg gcgtgccaaa cccctccacc ccctcccttg cgcgcgcgcg       600
     cgcgcgcgcc acgcgggcga aattgttccg atgatattaa ttttcggcga tattttnata       660
     aaaaaaaatt gtaatwrttt crgcgctcaa cttcggcagc cacccccgaa ctttgaacgc       720
     cgaaaccttt ktagcactac gg                                                742
//
ID   MSAT-1E_CR  repbase; DNA   ; CHL   ; 120 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   MSAT-1E_CR is a minisatellite unit - a consensus.
XX
KW   Non-autonomous; MSAT; MSAT-1E_CR; MSAT-1_CR; satellite; simple repeat;
KW   Interspersed repeat; minisatellite; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-120
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-1_CR, a family of minisatellites from the green algae genome.";
RL   Repbase Reports 5(3), 56-56 (2005).
XX
CC   [1] Consensus
XX
CC   The MSAT-1E_CR is a subfamily of MSAT-1_CR minisatellite.
XX
SQ   Sequence 120 BP; 16 A; 33 C; 63 G; 16 A; 0 others;
     ctgggcggct gaggcgaagg cggcacaggc ggtgcaggac tgggcggcgc ggggctaggc        60
     ggctccgggc tgggaggcac cggcggcgca ggcgaaggcg gagcgtccac aggcgcgggg       120
//
ID   SINEX-4_CR  repbase; DNA   ; CHL   ; 518 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   SINEX-4_CR is a putative nonautonomous non-LTR retrotransposon - a
DE   consensus.
XX
KW   SINE; SINEX-4_CR; nonautonomous non-LTR retrotransposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-518
RA   Kapitonov V.V., Jurka J.;
RT   "SINEX-4_CR, a putative SINE-like non-LTR retrotransposon from the
RT   green algae genome.";
RL   Repbase Reports 4(4), 120-120 (2004).
XX
CC   About 30 copies of SINEX-4_CR are present in the C. reinhardtii
CC   genome. They are ~99% identical to the consensus sequence.
CC   Usually SINEX-4_CR are flanked by 11-15-bp target site
CC   duplications. Th 58-bp 3' terminus of SINEX-4_CR is 91%
CC   identical to that of SINEX-1_CR. The putative Pol III internal
CC   promoter (pos. 50-73) was derived from tRNA. This region is
CC   similar to the Pol III promoter of RATHE2 (pos. 55-78), a SINE
CC   element identified in the A. thaliana genome (GenBank, AY033702).
XX
SQ   Sequence 518 BP; 115 A; 136 C; 151 G; 115 A; 0 others;
     atcgaccacg gcagaggttg cttagcgata agttggtgtg taacgtcggt tcagacccga        60
     gttcgatcct ccccaaattc ggtacagggg aaacctccgt gcgtattcaa atcacgcaca       120
     ggcgctccgc agggaccgca cggctcttca gtcgtgtcct tgtcatccgt ggctaacgtc       180
     agataagaga gcggtcgtga agtgccggca aaggggccgg actctggagc gatccagagt       240
     ttcagttgag atgttgcccg acagtcggca ttacctgatc ccccgatctc aggtaccgaa       300
     agccgtgagg gtagatcatc cgagctgaac atggatagga caccaggggc ttaatccacc       360
     ccgctcccac cggtgggcag gaccggcaaa tgataaggtg gtcgtggtga cttcccgcct       420
     tctctcgaac tgggttgaga gatgatcagc gaaggcgttg ccccgttaat acatgctagg       480
     ccctatgggc cagcgttggg attattatta ttattatt                               518
//
ID   hAT-N1_CR   repbase; DNA   ; CHL   ; 893 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   hAT-N1_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-893
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N1_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 48-48 (2004).
XX
CC   [1] Consensus
XX
CC   About 20 copies of hAT-N1_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   hAT-N1_CR is characterized by 14 TIRs and 8-bp TSDs.
XX
SQ   Sequence 893 BP; 189 A; 277 C; 228 G; 189 A; 0 others;
     cagtgtttcc aaaagcttat acaaggtatt agcgttatag taccccacgg gtacctgcct        60
     gctcaagaca ttttacttcc agtacccggg ggccgaaggc cccgtctccc cttcgtaggg       120
     ggggttcggg cgggcggaag ccccccccaa aatttttttt cacgaccata ccaaaataca       180
     ctgttttgag tgaattgcat gcgtttaagt cttgccacgt cgtcctgtct tgcttccaaa       240
     tcttgagtat cagccagccc gaaactgttt ccgccccgct acatgcagct tcctgcgtca       300
     gtctgcacac ccacagccac agcaaccaca actactaagt gcattaatcg ccccgccaca       360
     gcttagtccg cccagcggaa ctcggcactg tcacgccagt gcttcagggc tgccgcgtac       420
     gggaagtccg acacagagaa ccaccgctgc gccatcatgc gcacagccag gcacaggtgc       480
     cgctgctcca gccagttgcg ctgcttgttc ttgatgtagc tcatggtgct gaacacacgc       540
     tccgcctcca ctgatccggg tacaatggta gccgccagct tggccaggcg cacgaactca       600
     ctgcagctgt cggcaatgta ctgcgcgcga gtcagcgatt gccagaacgc cacgaagctg       660
     ccctgcggca gcgtcacggt gccagatgca gcagcctcta agacagagct cgcgtggtcg       720
     attgcctccg tgctgaacag ggcccgggta gtatagggtc cggcggatta aatttttggt       780
     acccgtgtgg gtactcgagg ccccaataat tagtttccag tacccgcgtc aatttcggcg       840
     aattattttc tcagtacccg aatgggtact agtacccggt tttggaaaca ctg              893
//
ID   Gypsy-1-I_CR repbase; DNA   ; CHL   ; 6701 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Gypsy-1-I_CR is an internal portion of Gypsy-1_CR LTR retrotransposon
DE   - a consensus.
XX
KW   5-bp TSDs; Gypsy superfamily; Gypsy-1-I_CR; Gypsy-1-LTR_CR;
KW   LTR retrotransposon; chromo domain; endonuclease; gag; protease;
KW   reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6701
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-1_CR, a family of gypsy LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 35-35 (2004).
XX
CC   [1] Consensus
XX
CC   Gypsy-1_CR can be still active retroelement. It is flanked
CC   by identical LTRs. The internal portion encodes the 778-aa
CC   Gypsy-1_CR1p (pos. 37-2370) and 1331-aa Gypsy-1_CR2p (pos.
CC   2664-6656) proteins. Gypsy-1_CR1p includes the gag-like domain.
CC   Gypsy-1_CR2p is composed of the protease, reverse transcriptase,
CC   endonuclease, and chromo domains.
XX
SQ   Sequence 6701 BP; 1508 A; 2017 C; 1934 G; 1508 A; 0 others;
     agtggtatcg agggtccagg gggccttcgc gaccaaatgg gacaaaagtc cggcggctcc        60
     gcgccgccgg cgaccaagca gaaatctgct ggtgctacgc gcaccacaca tggcaagccc       120
     acgggagcta ccacagccgc tgggaagcgg gcgtcagacc aaacttctga ccatgtgaaa       180
     tctcgacgtg ctattgcaca gggagccgag atgggagctg ctaaggacac ctccgacgtc       240
     atggatgacg ccaacgtggt aagtggcggt tcgccagcgg gctcagggaa gcgccgcatt       300
     cctggtcagc atgggagcaa ccagggcagt ccaggacagg gccatcgcga ttccaatggg       360
     gataccgtga tgggagaggt agttgggcct ggtgcgggag gcaccagagc tggggcagcg       420
     ggaacgcagc cgccagccag cacattgcct ccgtctgcct tgaacgctac ggaccggcgc       480
     aagcgcctca tggctgctta cctagctgct tacgctaggg tcaatggcca tgtccagcat       540
     tacacacgcg cggcgcaacc aattgtgacc gccgatgatg ttgtgcgcgc tcatgagctc       600
     gccactgtca tgggtacgtc cctgacactg actaaccaaa ccatgctgga ttacattctg       660
     gatgtcgcgc agaacgaggc attgcctccg gttccgacga ccgctggagc gccggctgac       720
     gcgccggccg gcccaatgcc ggctggtggc ggcaaccgcg ccgtcctgcc gacggccgtc       780
     acgccgatgg acccagtcat ggcggagatt aagcagtcgc tgacgcggct ggacacggcg       840
     ctcacggacc tgaagctgca ggcgcagcac gaccgcaagg agctggagga cctgatcgcg       900
     ctcaacgcac cccctccggc gccagcaacg gacaccgacc tgactaacac agcgtctgct       960
     gatagcagca gcaccagcga gtcggagccc agcgaggcgg tcgatgacga gccctcggag      1020
     gtggagcctc cggcggcgga gcccccggtg caggctgccg ctccggcggc ggacgccccg      1080
     ccgccgattc ggctgctggc gttcggcgcc aagccggcgg ccgccaagac ggcgcccacc      1140
     tccacggacc agcaccgccg gcggcgccag aagtacgtga gcctgggcgt ctccaggttc      1200
     aggcagtcgc cgcagtacgt gccgctgcgc gacgacctgt accgccacca gaaccgggcg      1260
     tcgatcaagg ccttcaccaa ggccttcgtc aagagcgtgg acgcctacct gaccgccaag      1320
     cgcctggaca agatgcaggc gctggatgag ctccgcgcct acgaggcgat ggacatcgag      1380
     atgccgctcc agtacctgcg cggcgagaac gcggagaagc tgacggagaa cgaccgccgg      1440
     cgcttctaca cgcagcgcat cacggcgccg cccacgtacg cggcggcggc ggcggcggca      1500
     ccgtccacca tcgacgaggt catcgcgcag cgcgaccagg taggcacggg tgggacgggc      1560
     aagaagccta aggtgccaga gccgcagaag ttctcggggg tgactgacaa gcacatcacc      1620
     tgcactacca cctggtttga cacgttcgtt gagtactgtg acgagcagaa gctcgaaccc      1680
     tcacggcatc tccttttctt ttgcactggg acggcgcaag agtggatggt ggggtacaga      1740
     cacgacatgc agctagctaa gatggccatt accacatcac ggttgcgcac agcgttcctc      1800
     caacagtttg gggatgtgcg gcgtcacacg ccggcggagg cccgccgacg tttgatgatg      1860
     ctagagcaca agcagcagcc gggggaacgc attgccacct acacgcaacg cttccgcctc      1920
     attgcacgtg atgcacggga catggctgag ctagatcgca ttgagcacta catgaacggg      1980
     ttagcggctc agtttcaggc tgtatgccgc acggactccg agggcaagga ctggacgtcg      2040
     cttgacagcc ttgttagcta cgcgctgggg caggagtcac ggaaaaccca atctaaaggt      2100
     gccacactcg cgattgctaa cacgtcacgc ccgcccttcc gatcccgtcc ccgcaaacag      2160
     ggctgcagca ccggcggcgg tggcggaggc ggaggcggcg gctacggcgg caagcggccc      2220
     ggcggcggcg cccgcgacag cggcaagccc aagaagattc gcgccgaccg gaacacctgc      2280
     cgccactgct tcgagcactt cgccaacggc ttcccggcgc agcacctgca ggactgcgcg      2340
     gtgctgaagc gcaagaaggc catggcggcc tagggggctg gcagtgagcg agagggcgcg      2400
     ggtcgtgtgg atagcggctc gcctggtctt ggtagtcctt tagccatggc ggtgacgccg      2460
     gagactgtgg tcatccctac cgttacgacg aatggggtag ctgcaatagc tgcgggtacg      2520
     acgcaggcta cgtttccacc accgccactg ccaggaggct ccgatagcgc attcagtgct      2580
     gacgagttcc gcctggtgga gaaatggctt ggcacgaaat tcacgtttga tgcagcgtgt      2640
     aatgaaaagg gtaccaacgc tagatgcgct cattttgcct ctccgtcacg ttcattcctc      2700
     gaatcggatg tggcgggaga aaccctctgg tgtcacgcgc cgtacgagca gttgacagca      2760
     ttcgcggatc attaccgcac gtgcaagaac gtaaaccgac agacactagt gctgtattcg      2820
     tggccccgca atggcctgag ctagagcagt actttaccaa gagcgggttt cgtctgttga      2880
     agtcataccc tactgggaca cagctgttca cgatcgcggg aagcaacctc acgacgcttg      2940
     cagcgccgtg gccagttcag ctgtggtatg acccgccaga gccggatgct aagctatcag      3000
     ccatagcacc gaaggtcagc tacactatga cgttccgtgg gcgcgcaggt cacaccgacg      3060
     tgaccacgct ggtcgacagc ggcgcttgca ccgttggcac agccgacggg tacatcagcc      3120
     agaaggcagc cacccaaatg ggactgcggg caaccagctc tcctacccct gccgttacac      3180
     tagctgacgg cacgcgcaag gcgctaggtg gtgtggtgca aacccgcctg caaatgggag      3240
     cttaccacgg gactgttcac ttactagtgt tgcctgacac cgtcaccgga gcacaaatca      3300
     tcctgggcac tgattggctt aaccgccacg gcgcacttat ggattgggag agtcacaccc      3360
     tcacgctacg tcgtggacac aagcgggtgg cattacggcc ggcatacacc gaatccccag      3420
     acatgttagc gggctcagtt tacgctgacc caatgcaagt catggactac gtgcgtgccc      3480
     tattgcacga tgcctcaacc ccccgcaacc ttatctcgaa gaacgagttc gcgcggtgcg      3540
     ttaccacata cggggaacac gcctttcttg cggtggtccg atggccggac ccgaccgacg      3600
     aagcgtggac ccccacatgc gcactggccg cagccactct ccccactcta ggtgacacgg      3660
     gactaattcc cgcacacgat ctgcaaaacc tcttaacaga acacgcggat gtgtttgaag      3720
     agctgaaagg gatacgcaag gataccaccg gcatttcaca tacaatcccc ctggtggaag      3780
     gcgctcaccc gccctcaaag cgtatgtacc gcctgtctca gggtgagact accgaggtta      3840
     acaaacaggt ggccgatctg ttagcgaaag gctttatcga gcctagcaac tctccattcg      3900
     gagccccagt cctgttcgtg cagaaaaagg atggcacact acgtatgtgc cttgatttcc      3960
     gggcactgaa caagctaaca gtgaagcgca attaccctat gcccaacatt caagacctct      4020
     tcgaccaact cgaaggtgca aaggtcttca gctcgctcga tttgcaaagt ggctattacc      4080
     aaattcctat cacaaaagag gatcaggaaa agacggcttt cataacgccg aaggggcagt      4140
     atcaattcaa ggtgttgtgc ttcggcctca ccaatgctcc tgcttctttt caagccacaa      4200
     tgagtaaaat cttcaagaag caattgggga aaaccgtgct agtatacctg gacgatatcc      4260
     tggtttttag caaaactcca gaagaacatc ttgcacactt gcgagaagta ctcggtgttt      4320
     tgcgtgagca tgaattcaag gcgaaattgc cgaagtgcga cttcaataag tcggaattga      4380
     agttcttggg gcacatcgta ggccgacacg gcgtgcgagt tgatgaggac aaggttaaag      4440
     tggtgaagga ctgggccaca cctacgaatc taaaacaatt acgttcgttc ctcggactgg      4500
     caaattactt ccgccggttc atccaggggt actcctccct ggtcgccccc ctcatggcct      4560
     taacgggaac gaaagtaccg tttgtctgga caccggagtg ccaggcagca ttcgaaggcg      4620
     tgaaggtagc acttacaagc gcacccgtac tagccctgcc tcgctttgac ctaccctttg      4680
     aggtatggtc cgacgcgtca atttacggca cgggagctgt tctcttgcaa gatggcaagc      4740
     ccgtagcgta taccagcgcc aagttcagct ctgctgagca caattacacc acgactgatc      4800
     aggagtgcct aggagtaatc cacgcactta ctgagtggcg ctgctacctg gacggagctt      4860
     cccacgtgac ccttgtcaca gatcaccaac ctctcaccta tttgcaagac caaaagagca      4920
     gtaacttact gtccagacgt caagcacgct ggatggagtt cttgtcccga ttctccttta      4980
     catgggagta ccgccctggc agaattaatg tggctgaccc aatatctcgt atctgggagc      5040
     ccatgtgcgc agcgctcaca cgctcagaga tttcttcgga cctccttgac cggatccgta      5100
     aaggctattc aggtgacagc ctattctctg attcgagggc atcagcaagc ctgcagctta      5160
     aaacctcagc gggtctctgg tacagagaca cccaggtggt gatccctgcc gctgatggat      5220
     tgcgggagct gatattgaca gagttccata acagccccac agccgggcac cgtggtgcac      5280
     gccgcttaaa ggaagcaatt tcgaggcgct actggtggcc acgtctggac gcagactgca      5340
     ctgagtacgt tgcctcgtgc ccggactgtc aacgcaacaa gccttccaac caaaagccgg      5400
     ctggaaagct gcagcccctc cccattccgg aagcgaactg ggacagcgta tcacttgatc      5460
     tgataacgaa attaccgaca acccttgctg ggcacgacgc tatagtggtg tttgtggacc      5520
     ggctgagcaa aatgactcac tttgctccca cacacagcga cgtcgatgct gaggaattag      5580
     ctgaaatttt cctccagtac gtgttcagac atcacggttt gccaatcaac ctggtgtccg      5640
     accgtggctc tgtgttcacg ggtcggttct ggaaagagct gttctcacgg ctacaaacta      5700
     agctgcattt ctctacagct tatcatccgc aaacggatgg ccagactgaa cgaatgaatc      5760
     gccttctgga agaaaccctg cgccattata tcggcccact ccaagatgat tgggacaaac      5820
     acctgcctct tatcgagttt gctatcaaca actcgcaaag cggtagcact ggggcgacac      5880
     ccttcgaact caactacggt cgacgacctc gggtgcccgg tgacctggcc ttgccttcta      5940
     gcaacgtgcc agcagcgcaa aacttctcag atgccatgcg gcagcgcatg gcgcacgcta      6000
     aaaaatgcct gcgagcggcg caggacaggc agcgtgtggc cactgactcc tgccgtcgcg      6060
     acagcaagtt cgacgttggg gatgacgtac tgctatcaac caaaaacatc aaactccgca      6120
     ttcctggcgc agcgaagctg atgcctaggt acatcggtcc gttcaaaatt cagcgacgga      6180
     tcggtgcggt ggcctatgaa ttggctttgc cacctggcta caagatacac aacgttttcc      6240
     acgtatcctt gctgaaagca tggaagcccg gccaggcgta caatccgcca ccggccattc      6300
     ttgaggataa cggtgatacc tattggtcag tagagtctct tctattgcac cgtgatcgca      6360
     agtgcgggcg caagacccta cgggagttct tggttaagtg ggagggctac gggcctgagc      6420
     ataactcttg ggagcctgag gctaacctgc gggagtccgc tccgttggaa gaagccatcg      6480
     aagaatacct tgcacgcacg gctactaagc aagccgcgcg cgagaaacgc attaacactg      6540
     tcgcacagcg cagggctgac cgcaaggctg ccgctactca gcggtacgcc acgcgtaagg      6600
     ccacgcctcc ggcggcccct accaaagctc cacgtcagac acgtggcagg gcaacttgag      6660
     ttactaccgc tcccgggacg ttcgctccaa ggggggggga a                          6701
//
ID   TE2-1_CR    repbase; DNA   ; CHL   ; 471 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-1_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   AAC target site duplications; TE2-1_CR; Transposable element.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-471
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-1_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 136-136 (2004).
XX
CC   [1] Consensus
XX
CC   TE2-1_CR is a family of nonautonomous transposable elements. The
CC   consensus sequence is less than 5% divergent from
CC   TE2-1_CR copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a 18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the AGCC
CC   3' termini.
XX
SQ   Sequence 471 BP; 91 A; 111 C; 156 G; 91 A; 0 others;
     ctcccagctc cgcagcgcga tggctcgccc tttgtgggga ctcacagtca agtgtggaat        60
     agcggggtgg cagtgtgtag ctgggacggg ctgtgagcgc attgtgtcgt gagcgaggtt       120
     gggagaggag actggagcag gggagggttg gatcgtgttg gagcgccagg gcaagcaact       180
     ttgtaagtgc ggcctcaaag cgttgagccc agcaggtgct atccctcgag gatatttggc       240
     attggctttg cctagacctc agcttggctt tcgtcggctt tggcctcatg gcccggggcg       300
     gtgcacttta gtgcccgttt tcatgtgttc attgttttca agagtttctg cattcgataa       360
     atagcccgtc gaaggctgta ctggtagccg aaacaagcaa aaaagacaac aaccctaatg       420
     taaggttctt gccgaggact aaggctgtcg cccccctttg gggggcgagc c                471
//
ID   MSAT-1A_CR  repbase; DNA   ; CHL   ; 72 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   MSAT-1A_CR is a minisatellite unit - a consensus.
XX
KW   Non-autonomous; MSAT; MSAT-1A_CR; MSAT-1_CR; satellite; simple repeat;
KW   Interspersed repeat; minisatellite; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-72
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-1_CR, a family of minisatellites from the green algae genome.";
RL   Repbase Reports 5(3), 52-52 (2005).
XX
CC   [1] Consensus
XX
CC   The MSAT-1A_CR is a subfamily of MSAT-1_CR minisatellite.
XX
SQ   Sequence 72 BP; 8 A; 21 C; 37 G; 8 A; 0 others;
     ctgggcggcg ctggcgacgg cggctccgga gacggaggcg ggctagacgg cgcagggcta        60
     ggcggctccg gg                                                            72
//
ID   MSAT-1B_CR  repbase; DNA   ; CHL   ; 72 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   MSAT-1B_CR is a minisatellite unit - a consensus.
XX
KW   Non-autonomous; MSAT; MSAT-1B_CR; MSAT-1_CR; satellite; simple repeat;
KW   Interspersed repeat; minisatellite; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-72
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-1_CR, a family of minisatellites from the green algae genome.";
RL   Repbase Reports 5(3), 53-53 (2005).
XX
CC   [1] Consensus
XX
CC   The MSAT-1B_CR is a subfamily of MSAT-1_CR minisatellite.
XX
SQ   Sequence 72 BP; 11 A; 16 C; 42 G; 11 A; 0 others;
     ctgggaggcg cgggagacgg aggcacaggc gagggaggag ggctgggagg cgccgggcta        60
     ggcggcgccg gg                                                            72
//
ID   hAT-N11a_CR repbase; DNA   ; CHL   ; 249 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   hAT-N11a_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N11_CR; hAT-N11a_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-249
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N11_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(7), 203-203 (2004).
XX
CC   [1] Consensus
XX
CC   hAT-N11a_CR is a subfamily of hAT-N11_CR nonautonomous
CC   transposons. The hAT-N11a_CR and hAT-N11_CR consensus
CC   sequences are 84% identical. hAT-N11a_CR elements are flanked
CC   by 8-bp target site duplications and contain 15-bp terminal
CC   inverted repeats. This family is composed of ~100 copies ~98%
CC   identical to the consensus sequence. Some copies are identical
CC   to each other. Therefore, this subfamily may be still actively
CC   transposable in C. reinhardtii.
XX
SQ   Sequence 249 BP; 55 A; 52 C; 81 G; 55 A; 0 others;
     cagtgctcgt atcttccatc tacactgtag aaatctgccc aaaatccgcc gaaggcggag        60
     aaaaattttt gggtttgggt gccacgcatc tacgcagtgt agacggtttt ggccggtttt       120
     ggcgcaaaaa tgggggaagc gtagacgttt tggggggctt gggggcttaa gtgtagatgc       180
     cgcggtcagg gtcatctacg catgtgtaga tgccgggtgc ctgagggcat ctacaagata       240
     cgagcactg                                                               249
//
ID   MSAT-4B_CR  repbase; DNA   ; CHL   ; 1184 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   MSAT-4B_CR is a minisatellite unit - a consensus.
XX
KW   Non-autonomous; MSAT; MSAT-4B_CR; MSAT-4_CR; satellite;
KW   Interspersed repeat; minisatellite; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1184
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-4_CR, a family of minisatellites from the green algae genome.";
RL   Repbase Reports 5(3), 61-61 (2005).
XX
CC   [1] Consensus
XX
CC   The MSAT-4B_CR is a subfamily of MSAT-4_CR minisatellite.
XX
SQ   Sequence 1184 BP; 224 A; 383 C; 373 G; 224 A; 1 others;
     agcatactgg ctgggcaggg cgcacatcgc tggttcgcgt gtgggcatgt cggcatggtt        60
     ggcgggtccg catcttggaa tgagtcggcc tacccccact tcaaggtatc ttgtttgcgg       120
     tcttttacat gaacgtatat gctgataggg atatggagga accgacgcca ggaaagtggc       180
     gacttttagc ctgaccttgc gtggctcgcg cgagggtcgg tcgcgctgga aaggcgaaaa       240
     caattcattg caccagcccc gaggccactt gccccacacg caacatagat acatattata       300
     tatgtaatat gaaatactcg cacaggcaag cagccgcatg gcgcaggtgt gccacgccgt       360
     gccgtcgccg gcgaccctcg ccgcgccacc tcggggccac cggggcccgc ccggcccctc       420
     cgccgcgtgc acagtcggcc cttgggctcc cagctagctt gcactatgag accagcagcc       480
     gccactgcag tcgcgctcgg cagggcatag cacgcaggag cccaggccgc ggcgccatgg       540
     tggggccctg agcgctgccc agccaggcga gcagacgctc ttgtgccata gaccggcgcc       600
     cacaggggcc gtaaggctat gtgacaaggc tgtgatatac atcagggaca gaggacagca       660
     aaaggggcga cataaagccc gtatgatgta cacacgtccc tctgtgcacc ttcctctcat       720
     gcaccctgca tcacctgccg ccgccgccgc tcggtaaacc agtcacgggc ccggcgtgcg       780
     accgggcgca ggccggctgc cggcgtcata atacgggaaa catatgtgac atgtcagctg       840
     ctatgcacca gagggtccag ggcatgtggt tgtgggcgcg caggagtgca tgcctttgtg       900
     ggtgtgcgtg tgggcgtgcc cgctgcgggg cagcrtgtgt agcacaagtg ccccggaggc       960
     tgtgcggcgc gcctgccccg ccccgctatg tcaagctaca ctaggtggca tgcaaacacg      1020
     gcactcagcc cgacattact agcggtgccc tgaccacacg gtggccgggc gcccggcagc      1080
     ccctcccggc gcagtgccca tagacgggcc cagcgcctgt gtggcggccc cacaaatgcc      1140
     ccaacctgct tggactaggc ttgtgaccat agacgcatgc ccac                       1184
//
ID   Gypsy-2-LTR_CR repbase; DNA   ; CHL   ; 1254 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Gypsy-2-LTR_CR is a long terminal repeat of the Gypsy-2_CR LTR
DE   retrotransposon - a consensus.
XX
KW   4-bp TSDs; Gypsy; Gypsy superfamily; Gypsy-2-I_CR; Gypsy-2-LTR_CR; gag;
KW   nonautonomous LTR retrotransposon; protease.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1254
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-2_CR, a family of gypsy LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 38-38 (2004).
XX
CC   [1] Consensus
XX
SQ   Sequence 1254 BP; 253 A; 341 C; 328 G; 253 A; 0 others;
     tgtagcaggt aagcgcggac ttcgtgtaaa cgcgtctgcc atgtttccta gctatgctca        60
     taaattgtac gaggttcgtg tttggagctt tcaaggttat tcaccaagca gcgactactg       120
     atcaagattt gctggacaag agcgtgtgcg tgtgtagggt gagtgcttgt gcggcgcggc       180
     aatcggcact tcccagtgtt tccgatgcgc atgcaagccg gcgtttctag aagcccagta       240
     cgtgctggtg ttattcttat tctttaagcg tgtttattta ggtaagcaaa cagacccacg       300
     cctgcgcggc gttggaggtg gacttcacgt tgaagaaggt ctgtttacga atgtgcactg       360
     cgcgcaggtg tgaagtacgg cagttgggcc ccggtggtcc ccatattgag ggttggaccc       420
     accatcgaag aaggtggttg gcagttgccc aaaagtactt aagggctgac cgcgccgagc       480
     tgtgacaagc tattgccaca agagcctagc caagtacaag agtaagcccc ccaaccgact       540
     gccaagtcac acatgctcaa gtgagccgtc tgtctgtgtt ccaatctttg aataggtagt       600
     gccggccgta ggccaggcac ggcgcacggt cgcgcccttt aggtttctgt gtttgattgc       660
     tctgcgggac ccaaccccag tgccttcttt gtaagcgtca agtaatacta ccggtacacg       720
     gtctttgcct gtcccgcctt cctctctaac tcccactcag cgtctcagac ctgagacgct       780
     gagcaagtca gccttagcta ttggaatagt cagcaacaag tcagcgagtg ttctgcttgc       840
     gtgtatatcc gtttcccttc ccggcacaca ggttctccct gccaggggta tcaagtcaag       900
     tcccgaccaa gactcctttc cctaccgcct cctcaccacc tactctcacc ctcaatccct       960
     cgtctagtct tcttcttctc ttcgagtgtc catcgcctac ttctgtatac tatcgtgtct      1020
     gtctcgctcg tgtgtgagcg caagccacgt gttaggtgtg tcgcgtgtca gtcaggtctt      1080
     cccatacctg tgaacgctag tgtaccggta tactgaacca agggaaggtc aaatcgtagt      1140
     gggtctgtct tcatacagct gctgcgtggc tctagagact cggtgacgcc tgcgccagta      1200
     cgtgaaaaaa tctgggttcc tgtatatagg gctcgcgcgt cttttgatgc taca            1254
//
ID   hAT-N9_CR   repbase; DNA   ; CHL   ; 694 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   hAT-N9_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N9_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-694
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N9_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(5), 146-146 (2004).
XX
CC   [1] Consensus
XX
CC   More than 30 copies of hAT-N9_CR are present in the C.
CC   reinhardtii; they are ~99% identical to the consensus
CC   sequence. The hAT-N9_CR family is characterized by 17-bp TIRs
CC   and 8-bp TSDs.
XX
SQ   Sequence 694 BP; 179 A; 149 C; 209 G; 179 A; 0 others;
     cagggttgca cagtactcag tacgtgttag tacgtactag tacgtactga gtactagtac        60
     gcctctcctg ggtctcagta cggcgcaaaa tacgccaggg gggcgggggg cgggggtgtg       120
     ggggtcgccg gcgggtgccg gtggccggtg gtcgtgccgt gtcaatgcgt cggtggcaca       180
     gtgcagtggc gagaggcaac atagacgcaa cataggcaac gtcttaagca taatatgatt       240
     ctgtgtgtgt agttgctcac aaccaaaagc ctgatatcag tgacacgatg gccgatgcga       300
     tgcgcgaacc gagcctgccc tattggatac gcgcaatgga gctctggatg gataaacttg       360
     atggccaaac agtaggcaaa acaggctgcg cagttgtcac tccgctcatt tctcgacatt       420
     taataacaag tatgcgtttc caacagcata gcgagctgta acggcctcga gtatggtcat       480
     gtatagtagg atacagggaa ggatactaag gaggaacacg gagagcgaaa tttgcaatgg       540
     gaccgggcat aggctgcatg ggacgtacta tagcacgtac taacccttgc tcgccggcgt       600
     attataagtg aattatggtg tattgtacta gaaagctgtg tactgcgtat taatacgcgt       660
     attataagaa aatggctagt acagtgcaac cctg                                   694
//
ID   TE2-2_CR    repbase; DNA   ; CHL   ; 764 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-2_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   AAC target site duplications; TE2-2_CR; Transposable element.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-764
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-2_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 137-137 (2004).
XX
CC   [1] Consensus
XX
CC   TE2-1_CR is a family of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-1_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a 18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the AGCC
CC   3' termini.
XX
SQ   Sequence 764 BP; 125 A; 209 C; 234 G; 125 A; 0 others;
     ctccccgctc cgcagcgcga tggctcgccc tttgtgggga ttttccgctt gcagtcgtgg        60
     tgtaacaggg gaagtgcgca ggtgaagctt cagcgctaga gacatttttc ggcccacggg       120
     caacatcgct ccgctgggtc gctgcggcgt tgcgcgctcg cgctgcgctt cctgcccttg       180
     catgtgcgtg cactgcactt gctatgcgac gttggctatg gtgggggctg ggggcgaggt       240
     tcaggcgcat cgcagcagca cggttgcgga gtgttgcaac gagcacgtcc gcgtcgtcca       300
     gtcgttgtgt gcatgcccat gaacaccagc agcagccaca ctaccgcgtc gaagaagcaa       360
     tctcctacaa tgtagggcac tggccaccgc atcaatacat tggcggccag gacagcgtcc       420
     agttctgggc aaggcgacat tttttggctt tggcttcggc tttggctttg gctttggctt       480
     ggcttggctt ggcgtgtggc tttttggctt tggcttggct tggctttgat ttcgacgctt       540
     gcctgcaaat gctgatggct ccacatcaag ggcagcggcc tcggtcggag gtgcgctttt       600
     tctaccagtt tttctgtgct gcgtatttcc acacgtttct tgccttggca aatagaccta       660
     agctgccgct atttgcatac agtcgaaatg aaaaacagag aacaacccta atgtatggtt       720
     ctggtcgagg actaaggctg tcgcccccct ttggggggcg agcc                        764
//
ID   hAT-N7_CR   repbase; DNA   ; CHL   ; 1125 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   hAT-N7_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N7_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1125
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N7_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(4), 125-125 (2004).
XX
CC   [1] Consensus
XX
CC   About 20 copies of hAT-N7_CR are present in the C. reinhardtii
CC   genome. They are ~93% identical to the consensus sequence.
CC   hAT-N7_CR is characterized by 15-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 1125 BP; 234 A; 289 C; 361 G; 234 A; 1 others;
     cagtgctcgt atcttccttc ttttcgacag aaatttgccc aaaaatgcct ccggcggaag        60
     aaatttttga ttcttgtggc caaaaatctg tggaaacgct tcaggtttgg aggggtcttt       120
     ctgagattcg cagaagacat tttagggcgt ttctgtcact tgtccgggcc caaggcaagg       180
     gtgactgagg ttccccagga aactctatct acggccgtgt cctgctggca ccgtgggggc       240
     acaccaagat agggcagcct tctactaggg gagtcattac gtgggtgggt gagcgtgatg       300
     agcgtgggag agggcgctgg ggtttggcgt ggggatgggc cacgttttgc catggagcca       360
     tagagccggt gctttttcag caacgtagtg ttaacgtggc aacagcaacc tcaccccgca       420
     cgctgtaaca ggggcacatc ccgtgcggcg gaatattttg ctgtgccgga gccgaaacgt       480
     gggctggggg caacagcaac ctcaccccgc acgctgtaac agcggcacat gccgtgcggc       540
     ggaatatttt gctgtgccgg agccggaacg tgggctgggg gcaacagcaa cctcaccccg       600
     cacgctgtaa cagtggcaca tcccgtgcgg cggaatattt tgctgtgccg gagccggaac       660
     gtgggctggg ggcaacagca acctcacccc gcacgctgta acatgggaca tcccgtgcgg       720
     cggaatattt tgctgtgccg gagccggaac gtgggctggg ggcaacagca acctcacccc       780
     gcatgctgta acagaggcac atsccgtgcg gcggaatatt ttgctgtgcc ggagccggaa       840
     cgtgggctgg gggcaacagc aaccttaccc cgcacgctgt agtttgtgtg gtgtggagtt       900
     tctgttttga gatggatgca cggcacgaat gggagattga gagattgctg acacggcctg       960
     ccacacccct ggcttgacac gaaccgtgca taggtcgggg gcggagcccc cggaaaattt      1020
     ttgggatgaa agatgcggcg gcagcgggtt tctgaaaatt aaagatgccc tatttcggaa      1080
     atctgtcact ggcgccgcac ctgccttctt aagatacgag cactg                      1125
//
ID   Copia2-LTR_CR repbase; DNA   ; CHL   ; 305 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Long terminal repeat of the Copia2_CR retrotransposon.
XX
KW   5-bp TSDs; Copia2-I_CR; Copia2-LTR_CR; LTR retrotransposon;
KW   COPIA superfamily; endonuclease; protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-305
RA   Kapitonov V.V., Jurka J.;
RT   "Copia2_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 105-105 (2004).
XX
CC   [1] Consensus
XX
CC   Copia2-LTR_CR is a long terminal repeat of the Copia2-CR LTR
CC   retrotransposon, whose internal portion is deposited in
CC   Repbase as Copia2-I_CR.
XX
SQ   Sequence 305 BP; 73 A; 74 C; 101 G; 73 A; 0 others;
     tgttggtatt ctagggtcag ggggagcctg actgagctct gtgcgggtgc aggggaagtg        60
     cagccactag gaggggttgc gggcatgaac cgctggagca gtgactcaga ggggcagcgc       120
     accgggaccg tgtcggaggc gcaatgcagt gtgccccggg cgctaggcca agttgcgcaa       180
     gtcagttgca gtagcagata caacaaattc ttctgacata tgagacactg aacagaacag       240
     tcaaacacgc gactgtgtaa agtgtcactt gcgaacccta gcttggccga cctgtctcag       300
     caaca                                                                   305
//
ID   Gypsy-1-LTR_CR repbase; DNA   ; CHL   ; 484 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Gypsy-1-LTR_CR is a long terminal repeat of the Gypsy-1_CR LTR
DE   retrotransposon - a consensus.
XX
KW   5-bp TSDs; Gypsy superfamily; Gypsy-1-I_CR; Gypsy-1-LTR_CR;
KW   LTR retrotransposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-484
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-1_CR, a family of gypsy LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 36-36 (2004).
XX
CC   [1] Consensus
XX
SQ   Sequence 484 BP; 92 A; 134 C; 141 G; 92 A; 0 others;
     tgtaacacgg gcctggcgga cttagccagg gttcgtgccc cgagcttgcg acacgcaaga        60
     ctagctttgg agagcaccta tgtgtgcgta tcaatagctt agaacattat caatggctgt       120
     gatttacagg gcacagtatt aaggagggcg cgtatgcgcg tccccatctc tgtacggggc       180
     taggcgaacc cggctatatt tagcactcgt cagggccgct tggaggttac tcttagtatc       240
     ggaaggatcg tctccttccc ggtgccttta tgctacggga gcgcagcttc ctagtatcct       300
     ctctctgctc tctcctcaac ggactttccg tccgcgtccc tgtgtcgcgg cctacgaagg       360
     tcctggaggt aagcttgctc tgaatgcttc taagtagtta gagccggcgt tacaataagc       420
     tggacactcc aggaagatgt gcgttaggct ggcccacgcc cgcgggccag gtggcccgca       480
     ggcg                                                                    484
//
ID   Copia3-LTR_CR repbase; DNA   ; CHL   ; 327 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Long terminal repeat of the Copia3_CR retrotransposon.
XX
KW   5-bp TSDs; Copia3-I_CR; Copia3-LTR_CR; LTR retrotransposon;
KW   COPIA superfamily; endonuclease; protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-327
RA   Kapitonov V.V., Jurka J.;
RT   "Copia3_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 107-107 (2004).
XX
CC   [1] Consensus
XX
CC   Copia3-LTR_CR is a long terminal repeat of the Copia3-CR LTR
CC   retrotransposon, whose internal portion is deposited in
CC   Repbase as Copia3-I_CR.
XX
SQ   Sequence 327 BP; 66 A; 94 C; 97 G; 66 A; 0 others;
     tgttggtaat ttgggttatt gggcagcact gccggtgagg tggtagctgc ggtccgaact        60
     tggggccctg ggaagttagc gaggcgcctg ccctgatcag gcagaagtgc ctccttgtct       120
     gcccgcctgt agcgcctccc cgactgccag tacggcattg tgtcggttcg cggaccgtcg       180
     ggaagactta agacccgacc aagcgtgttg ctgataacta cacacgcgca ttatataccc       240
     agactaccga aggtgccagg cagcgtagct gcatcgtgtg taacgcaccc gctagcaatt       300
     caggcttgcc gaaccaactt cgcaaca                                           327
//
ID   MSAT-1C_CR  repbase; DNA   ; CHL   ; 90 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   MSAT-1C_CR is a minisatellite unit - a consensus.
XX
KW   Non-autonomous; MSAT; MSAT-1C_CR; MSAT-1_CR; satellite; simple repeat;
KW   Interspersed repeat; minisatellite; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-90
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-1_CR, a family of minisatellites from the green algae genome.";
RL   Repbase Reports 5(3), 54-54 (2005).
XX
CC   [1] Consensus
XX
CC   The MSAT-1C_CR is a subfamily of MSAT-1_CR minisatellite.
XX
SQ   Sequence 90 BP; 13 A; 20 C; 48 G; 13 A; 0 others;
     ctaggcggca tcggcgacgg cggctccgga gatggaggct cagggctggg aggggccggg        60
     ctggggggca gtggcgaagg cggatgcgga                                         90
//
ID   hAT-N11_CR  repbase; DNA   ; CHL   ; 268 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   hAT-N11_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   8-bp TSD; DNA transposon; hAT superfamily; hAT-N11_CR; hAT-N11a_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-268
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N11_CR, a family of nonautonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 4(7), 202-202 (2004).
XX
CC   [1] Consensus
XX
CC   hAT-N1_CR is a nonautonomous DNA transposon. Its copies are
CC   flanked by 8-bp target site duplications and contain 15-bp
CC   imperfect terminal inverted repeat (2 mismatches). This family
CC   is composed of ~20 copies ~95% identical to the consensus.
XX
SQ   Sequence 268 BP; 52 A; 56 C; 93 G; 52 A; 0 others;
     cagtgctcgt atcttccatc tacgctgtag aaatttgccc caaatccgcc gaaggcggag        60
     aaattttttg gggtttgggg ccgcgcatct acggagtgta gacgttttgg gcggatttgg       120
     cggtatctta gacagggagc gtagatgttt tgggggtttg gggggcgtgc ccctagggaa       180
     aattttctgg gcgtagatgg cgcgggaggg gtcatctacg ctgtgtagac gccgggggcc       240
     taaagccatc tacaagatac cggcactg                                          268
//
ID   DIRS-1_CR   repbase; DNA   ; CHL   ; 6454 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   DIRS-1_CR is a putative DIRS retrotransposon - a consensus.
XX
KW   DIRS; DIRS-1_CR; Interspersed repeat; LTR retrotransposon;
KW   putative DIRS superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6454
RA   Kapitonov V.V., Jurka J.;
RT   "DIRS-1_CR, a family of DIRS retrotransposons from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 49-49 (2005).
XX
CC   [1] Consensus
XX
CC   It is an incomplete DIRS retrotransposon. It encodes
CC   the DIRS-like integrase and remnants of reverse transcriptase.
CC   DIRS-1_CR harbors a copy of L1-2_CR, which is masked by "N".
XX
SQ   Sequence 6454 BP; 950 A; 1639 C; 1742 G; 950 A; 1047 others;
     agtgctgaag ctcaaatgct cgtcaccgta tcagctaact ttgagtggcc ttcaccgttc        60
     ctcgcgccaa cagccccagc atgcttcagt tcagcatacc ctctcgcgaa gagggcggga       120
     cgggtgggag ctcggttgcg gtcagttcga gccgatacgg agcgagcaat gctatggtaa       180
     gagtttaagc aagtagtcaa aataggcgaa gcaagtattg acggcgaaca actgggcgaa       240
     caacttaaca cctttcgcct cgatatgcgc tcaccactgt aacaggcaaa tccgaatggc       300
     agtttattat tatcggtatt gcgagctcgg gcgagcgagc tatcgaaacc tgtgagttct       360
     ctcggcacga accgtgtcac cgtgcctccg tcgcgcaccc aatcactacc ttcgtgtgtc       420
     gcgcaggtca caccgttaag cggggctcgt tatccgcctc tcgggtactt aaacctcgcc       480
     tcgagcagcg accttctgac tccccacaac tttctcagtg tcggtttccc gccggtgggt       540
     ggctcgaagt cggatgcata agggtgcata actggctacc ggcctttccc aacagttcaa       600
     gctttcgaac aagccctttt atccgggcaa cgacggccag cctacccaac gcgcctccac       660
     tggcggaata cggcgtgagt ggttaggggt cgagctgttc ttgcggtcgg ttactgaccc       720
     gtttccatgt gcttgcaggg gtacctggct cagctgcggc tggggcaggt cgcttccctg       780
     gtggttgatc ccggtgcaac acctgatgcc accgagcggc atgccgttta ccaggcgggg       840
     ctggaggccg cgcacgagct gcgtcagtca gctttggcct ctgcgactgt cgccaggcaa       900
     aacaaagccg cggcggagtt gtggggctgg ctccaacgct accggccggg cgtctcaccc       960
     gctacctgtt ccgacgagga cctagcggca tacgtcatga aggggtggct tcccaaccac      1020
     cattctcgcg cttcggcgga cgtgccggcc ggtcccagcg ctctgaaatc tcacctatcg      1080
     tcactgagcg gcttcttcaa ccgcatcgac cgcggaggcc cctacaactc gtctactagc      1140
     cgtggcaacc cttgcgagtc ttctatcatc gaggacctgc gcactgctta ccagcgggag      1200
     caggtgcagg cgggttatgc ggaggtctct gcggtgccca tgacggaggc caagtaccgc      1260
     gctctggcct tctacctgtg ggctcagtac agcgcggcag ccaccgcaat cgagcggcta      1320
     gtagcgcttc gagaccactt atgcgtgttg ctgctgtggc agacggctgt gcgggggcac      1380
     gacttgggca agctgggcac cggcgacttc gtaaaccccg acaacacggc gctgcccttc      1440
     cagggtttcc cgctgctgcc gccatggcag tggggctcgt acctcggccc catcctgtgc      1500
     ttctgcgagc gcggaaccaa gactcacaag ctggcgcgcg cacctccgat cttcctgatg      1560
     cccgatgtgg cggagcctcg tctcagcata ccgcgcgtac tggcgctgta catggcgctt      1620
     tgctctgctg ccgatgcgcc tcctggtagc gcagtggcgg acctgctgtt ccggcctctc      1680
     gccccggatg gaaagaggtt taaggagact cccctgagca gttctgccat gggtgctcgg      1740
     ctccgcatgc acctggttgc agctggtctg tacggcggcg aaaccgtgca cagctttcgg      1800
     cgcggttcat tgcagaatgc gcaggcggtg gggttgccac cgtcttcact gttagacttg      1860
     gggcagctgc gcactcccgc cgtgctagag cgttacttgg actctagccg tcacttaggc      1920
     cgcgacgtgc gggctcgggt agaatgaatg tacagatggc aggagtggtt gcgaagtcta      1980
     gggtgtgcaa gccatcgact gaaccgtgga tgtatgggag tgcaaaggga cagggtttag      2040
     gcaggtggat gtatgggaga ggtggtggac acacacgccg attgcgtgtg acggtaccaa      2100
     cgaccgcgtg ctttggagtg cccgggtgct gggcatggga agnnnnnnnn nnnnnnnnnn      2160
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2220
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2280
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2340
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2400
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2460
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2520
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2580
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2640
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2700
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2760
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2820
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2880
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2940
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3000
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3060
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3180
     nnnnnnnnnt ctttgaagtg ggatgaagag gtgacggtac ggtagcgcgt ctgtgattgg      3240
     tttgcttgag gctagatatg ccagactaca cgaggcacgc ctcgcaacta ttcggtggcg      3300
     gcacgttgga ctgaaagggc gggtgggggg aggcttttga gagcaattag gttatgcagg      3360
     tgcctgctat gttcaaactc aagcgcagtg taaagcgtag tgtgatgaca ataagcttaa      3420
     gcttcagcta ttgacagggg atgccttctg ggcatttccc accgtactgc ccattgccga      3480
     gcattccagt caccttgagt gctgaagctc aaatgctcgt caccgtatca gctaactttg      3540
     agtggccttc accgttcctc gcgccaccag ccccagcatg cttcagttca gcatacccaa      3600
     cgacaccgcg ccggcggctc tcagcgtaca ttcagcgggc catgtaccac tcctgaaacg      3660
     ctgcaatgcc ttcgctcctc acgtacaccg cctccaccgc atagtgcgga gcttccggcc      3720
     gcgggttggc cggcacttgt ctgcccggca cttgcctgcc tgacacagcg cctgaaccgc      3780
     tccggcagcc gactgagttt gctcacccac acgactggcc acaccggcac gatggtaaca      3840
     cagctcaccc gcttatcctc cactttcagc actactcttc ccatctcatc aaatggcgca      3900
     ttgacgacaa cacgccgacc tgcgcccact gagctcagtc ttacgcgaac gcattcgccc      3960
     ctgaagtgtt ggggctccag aagcgggaac agaagcgacc cggcagcgtc cccactcatc      4020
     ctcctatcta gtcacgccgg ctgcagcccg cccaaccaca cgcgcgtgga ggggcgtgca      4080
     tgccactgcg ggctcaatgg ccgtgatgcg gcccgccacg cgcgcagtgc aggtaggaga      4140
     tggtgctggc ggcttgccga gtccaaggcg tgggggcgct aaatgcccac cagtcaggac      4200
     gcaacctcgc gcggccagcg gcccgccgcc caccagcacg ggcctctccg gtggcggtca      4260
     tgatggtctg gctgttgcgc atggaggccg cgtcgagctg ttcgcggggt ggcccagagt      4320
     agtctgaagg cgctgcaaac gtcgggcagg cagggtagca gcagcggcct ccgaggggtg      4380
     acgagtgttt cgtcggggta ccgatttgac ctacgcgcgg tggcagtgtc ttgttgcgcg      4440
     agcgccgtgg tggatgccgc actcgtcagc tgttgcggca gcgagcctcg cgcgtgaagc      4500
     tgtcgtagca ggctgctcaa gaagtcagcg ttgtccagca gtaaggccag gctcgaggtc      4560
     aagctctgaa gtagggtcag ggaaggcgcg atgcctatgg cgcgcgggcg accggcaccg      4620
     gcgtcagcgc gtcgcggcag cggggcaggc caggcctagg cggcgagtgc aggtagaact      4680
     gtggctgctg ctgcggctgc tgctgcggct gctgctggct gctgctgcgg ctgctgctgc      4740
     tgggattggg ctgctgcggc ggccagtatg ggcctgcggc cggggcggac ctttgcggga      4800
     agccgagcgg cgccgccagg aggccctcct agaccagggc gcggccgcaa taaggcaggc      4860
     gccgcagcct tcagctcagg ctgcgctatg gctggggcgg aggtactgcc gcaggccggt      4920
     ctgcgccgcc agtggcgctg cggcgagggg tgcgcggccg gagcgggcgg ctccacgact      4980
     gaagcggatg gcgctgcggc cgaaccggct tgggcggcaa gcccagggct gctgggtggg      5040
     cagcgggccc gcttggtctg ctgcaagctc gatgaggcca ccttggcccg ggatcatcgc      5100
     cggcggtgct gctgcggcgt tgatgtcggg gccagcctcc gttgctaagg cagctgcgag      5160
     cggcggctgc tggtgaggcg cggcccctga gtcctgccca acccctactg cctcggcctg      5220
     caagggaaaa gggggaggtg gcagaacgtg ccgtcagttg tatgcgtggg ctggaagagg      5280
     gcgcggcctg gctgcggcat tgccgaagac atttgcccgc tgtacacgag cgaacggtgc      5340
     tgctcaatcg gaacgcgggg tgctgccccc caagtcgcgt gtgcgggtgc tgcccgagac      5400
     tcggcctctg tcttgggttc tgccctcgta cgtacgacga tgcggaagcg ccgaagaacg      5460
     cgtgcgggtg ctgcccgaga accggtcaga tgggttctgc ccaaggggcc tgcctgctag      5520
     gcgcgaacta gggtactgcc ctgccgtaat gcgggtactg ccctgtcgta atgcgggtac      5580
     taccctgtcg aaagcgtgcg ggtgctgccc gagttgctag acgctgggtt ctgcccagat      5640
     cagcgcgggt tctgcccggc ttaccgcaag cgcttcatct tctccagtcg cggcgccagc      5700
     gcaggaggcg tcggccgcgt cggctgagtg gaacccggcg cgtacgttgc ggcctctgcg      5760
     gggggtcaag gggcgtcaaa aggcgcctag gctctagcgg ctgccggagg tcaatctgga      5820
     catgtaagaa atgggcttca gcgcgccggc tggggccctc tgaggctgtt tgctacacgt      5880
     tcgcgcgcaa gcaccatcgc agctgcgccc ggctcctcgg ctcccttgcg cctgtgcgcg      5940
     ccgaccaatc gacgctgaca aatgactgct cgtgtgtttc aggatctccc tttcccgcca      6000
     gaggctatag ttttctggcg atgccgatta cccctgcacc caaggacacc gcttcagcgg      6060
     ctctcctcgc tgacgctctc ttacggcaaa acctagggcg cctcctaaac cgctcctagc      6120
     gctaaacctg acgtgttcgc gacagagcgc ttttgagagc aattaggtta tgcaggtgcc      6180
     tgctatgttc aaactcaagc gcagtgtaaa gcgtagtgta atgacaatag gcctagggcg      6240
     cctcctaaac cgctcctagc gctaaacctg acgtgttcgc gacagagcgc ttttgagagc      6300
     aattaggtta tgcaggtgcc tgctatgttc aaactcaagc gcagtgtaaa gcgtagtgta      6360
     atgacaataa gcttaagctt cagctattga caggggatgc cttctgggca tttcccaccg      6420
     tactgcccat tgccgagcat tccagtctcc ttga                                  6454
//
ID   MSAT-4A_CR  repbase; DNA   ; CHL   ; 1171 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
XX
DE   MSAT-4A_CR is a minisatellite unit - a consensus.
XX
KW   Non-autonomous; MSAT; MSAT-4A_CR; MSAT-4_CR; satellite;
KW   Interspersed repeat; minisatellite; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1171
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-4_CR, a family of minisatellites from the green algae genome.";
RL   Repbase Reports 5(3), 60-60 (2005).
XX
CC   [1] Consensus
XX
CC   The MSAT-4A_CR is a subfamily of MSAT-4_CR minisatellite.
XX
SQ   Sequence 1171 BP; 191 A; 392 C; 385 G; 191 A; 11 others;
     gagctcsctg gccgggcacg gggcgcatac gtggcgcgtg ggtgggcatg ccgacatgtt        60
     tgccgggtcc gcatttcgtt aggattcggg ctacccccac ttcaaggtag cttgtttgcg       120
     gtcatttggg cccacctata tgmtaatagg caaatgaagg aaccgacgcc aggaaagtgg       180
     cgacttttgg ccagaccctc agcggctcgc gaccgggccg gccgcgcgag aattgcaaaa       240
     acaactcctg aagcatgacc raatgcagct cgcccagtgc ttcgtatggc ttactcgtat       300
     atctgtatat ttgatttctc gccgcgttca ccagcaccac cacaaacgtg tgccaggtcg       360
     ggccgtacca cggtgccctg gccgtgccct gcgygcactt cctgggcccg ccacgcccct       420
     ctgctgcatc ccactcctgc ccccagccct ccaggcgcct ctgggtacat gcatagcagt       480
     cgtcagcatc acacctcggc aaagcagctc gcacacggac gccccctagg cggcgcccag       540
     cccaggggtg cgtgcaaggc tacacactgc gcccgragct ggcaggggct gccgcggctg       600
     ayttcgcakg ccgccatggc gtggatgccc gacatagcgc ctgtgcattg cggtgcaggc       660
     ggctctgggc agcctagagc cgccgacacg caccaatgcg ctcggctcac cgcccaccgc       720
     cgcccacggc gcmcacgcag cgcatcctca gtcgcggccc gggcgtggga gtggctgaag       780
     gggtgctgcc ccgcttcaga tcacacctag agacgggcag gtcacgtggg gatgcgcgag       840
     ggggcggggc ggacaaggcg tgtgcggagg catgcaggct tcgtgtgggg ggccttgagg       900
     gcgtgtggct gcggcggtgg ggaatgggcc gcttccgtgc cttggagcct gggcgctgta       960
     cctgcccggc tcgcagtggt aagccccggt agmtggcatg ctataacggc tctcgggccg      1020
     ccaggaatca acacggccgg gccacacggt ggccgggcgt ccggccaccc cacacgccga      1080
     agagcccacg gacgggccca gcgcccgcgc ggcsgccgca caaatgccca ggcctgcttg      1140
     ttccatacgt gtgtccatkc aggcgtgcta g                                     1171
//
ID   Mariner-N3_CR repbase; DNA   ; CHL   ; 654 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N3_CR is a family of nonautonomous Mariner DNA transposons - a
DE   consensus sequence.
XX
KW   mariner superfamily; Mariner-N3_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-654
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N3_CR, a family of nonautonomous Mariner transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 131-131 (2004).
XX
CC   [1] Consensus
XX
CC   Mariner-N3_CR is a family of nonautonomous transposons. The
CC   consensus sequence is less than 5% divergent from
CC   Mariner-N3_CR copies. Features of Mariner-N3_CRs include 25-bp
CC   terminal inverted repeats and TA target-site duplications.
XX
SQ   Sequence 654 BP; 149 A; 226 C; 145 G; 149 A; 3 others;
     ccgtagtgtt acaaaggttt cgggattaat actttcgggg agggagccta aaacatttat        60
     gaaaatattc gggaaaataa atattcggga cgcccgccac ggagattttc gagcttgatt       120
     cgataattcg gggcaccgct cggaatgggc ttgcggcacg gcctgtggcc cttgtgacag       180
     ggcgcctctc gtgtaccatt caccagaacc gcgtactcct catgccattg tgcatacaca       240
     gcaccagcca cgagccacca gtcaccacca gcttaccccg cctactcccc aagcccgcac       300
     ccacgcttgc acccctcacc cgcaccccca ccggcacccc acgcccacac cggcacaccc       360
     ccacctgcac cccacgccct caccccacgc ccgcaaccct gtgtcyaagt tgtagagaaa       420
     atttctaagc gaaaatcgct gcatttacgc tggtcccatc gccttgcgtg ccgctgtgac       480
     ccgtccgcac cccccacccc ggcgcgcgga gcgcgcccgc gaaaaaccaa atttcgtgct       540
     gttgatactt attttcggga agccagggcc attaatawtt atytaatagg ttcgggaaac       600
     agattcgggg cctctccacg aacttagttt cccgaaacct ttgtaacact acgg             654
//
