ID   DNA5-1_SP   repbase; DNA   ; SPU   ; 177 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus sequence.
XX
KW   DNA5-1_SP; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-177
RA   Kapitonov V.V., Jurka J.;
RT   "DNA5-1_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 221-221 (2004).
XX
CC   [1] Consensus
XX
CC   The genome contains several hundred copies of DNA5-1_SP
CC   elements that are ~98% identical to their consensus sequence.
CC   These elements are characterized by 5-bp target site
CC   duplications and 17-bp terminal inverted repeats.
CC   Classification is unknown.
XX
SQ   Sequence 177 BP; 65 A; 28 C; 29 G; 65 A; 0 others;
     cagggaataa ttttcctcaa attttttgat tagcaatttc agccgatgga taaatatttc        60
     aaatgaaatt ctgtacattt ctatggaaga aaactgctac acaaaagata ttttgtatag       120
     cagtcatgca aaaatgcata gcaaattgcg atgcgatacc aggaaaatta ttccctg          177
//
ID   SP2109AA    repbase; DNA   ; SPU   ; 273 BP.
XX
AC   K01645;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus 2109A repeat element.
XX
KW   2109A repetitive sequence; SP2109AA; Repetitive sequence.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-273
RA   Posakony W.J., Flytzanis N.C., Britten J.R., Davidson H.E.;
RT   "Interspersed sequence organization and developmental representation
RT   of cloned poly(A) RNAs from sea urchin eggs.";
RL   J. Mol. Biol 167, 361-389 (1983).
XX
DR   GenBank; K01645; Positions       1     273.
XX
SQ   Sequence 273 BP; 74 A; 51 C; 54 G; 74 A; 0 others;
     ggatcaggat ttgtaactct cctacatcag ctctatgttg ccaacctctc gatgaagcta        60
     ttgctgcaaa ctctttgagt gtagcattcc aactttgaaa caggggggca tttcacaaaa       120
     cttatcatca gtgacaaatg acagtttttt ttataagcta ccggtactga aatccttgct       180
     tatgactggt tatcagcaga tttgtttctg atttttgtca tttttcattg aaaaaaaggc       240
     tttgtgaaac gggtccttgg tttactaaag gag                                    273
//
ID   Mariner-N1_SP repbase; DNA   ; SPU   ; 569 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous Mariner/Tc1 transposon - a consensus sequence.
XX
KW   Mariner-N1_SP; Mariner/Tc1; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-569
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N1_SP, a family of nonautonomous transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 242-242 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors about 1000 copies of Mariner-N1_SP that are
CC   ~90% identical to the consensus sequence. Putative
CC   classification: Mariner/Tc1 superfamily (27-bp terminal
CC   inverted repeats, 2-bp target site duplications). Additionally
CC   to its normal node of transposition, a copy of Mariner-N1_SP
CC   (pos. 86-522) was recruited by hAT-N1_SP transposon (~100
CC   copies).
XX
SQ   Sequence 569 BP; 160 A; 123 C; 95 G; 160 A; 4 others;
     ccgtaaatct ccgtgtataa ggcgcacttt tttgccgccg aaaaaaattg aaagtcgggg        60
     gtgcgtctta tacacaggta cagaattttt taattttttt tttakttttt ttttwagttt       120
     cgatttatgc ccctccacct ggcgctatgc ctggcaatgt ctcccagctc agtaatcggt       180
     gtgttgactc accactcgga aactacaaca acactcaaat ttgtctgtca tcttggtttg       240
     aaagtaatct ttctaataga tctcaatatg tagtttataa taataattcc tcaaattttt       300
     cttctattac amatggygta ccacaaggtt ctatcctagg acctaggtac tctactgttt       360
     ttaatttaca ttaatgatct tacacattct tctaaaaacg acattgttac tattatttgt       420
     gacaagttca caagcacaaa tcagcgcctt caactgcacc tcgatgttaa atgaaggtcc       480
     ttccccgcgt gggttttcgg caacaaaaca acaacaaaaa aaggggtgcg ccttatacac       540
     aggtgcgcct tatacacaga gatttacgg                                         569
//
ID   Transib1_SP repbase; DNA   ; SPU   ; 4132 BP.
XX
AC   Contig7839;
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   12-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib1_SP is an autonomous DNA transposon.
XX
KW   Transib; DNA transposon; Interspersed Repeat; transposase.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-4132
RA   Kapitonov V.V., Jurka J.;
RT   "Transib1_SP, an autonomous DNA transposon from sea urchin.";
RL   Repbase Update (2005).
XX
DR   Spur20030922/BCM; Contig7839; Positions       1    4132.
XX
CC   Transib1_SP is an autonomous DNA transposon that belongs to the
CC   Transib superfamily. The sequenced portion of the genome harbors
CC   only one copy, which is flanked by the CGGCG target site duplication
CC   and is characterized by 38-bp terminal inverted repeats (2
CC   mismatches).
CC   Transib1_SP encodes the 676-aa Transib1_SPp transposase
CC   (pos. 833-1703, 2151-3310).
XX
FT   CDS           join(833..1703,2151..3307)
FT                 /product="Transib1_SPp"
FT                 /translation="MWVTSQTSHKKLLKSLSKTIGRFLYRMREKWNKCGR
FT                 RQEYFMKENEDWLNQTLTFNTEVETFLAQQNSTDTGTETEPTSDLPGTSQ
FT                 GASNVGRPAKNWDTLSDRSKKRKAHHLLEDREPEELLYAASQGVYKKNSS
FT                 LKYVLKFAMLTPSRPAKIRKLISEKKKEPLKFSSEEALSLLVETGMTKQA
FT                 YQTTRLAAKGKNADIYPPYNEIREAKEKCYPNDISVTEDSGKVPLQSLLD
FT                 HTALRIIQEQKDTITQVIENLEEDEQFNCELVCKWGFDQTAHQATVNTKQ
FT                 KSTAGTLDDSSIFCTTLVPLQLKVKDSILWQNPVPSSSRFCRPIHLQFKK
FT                 ETTELSQEEYRSVQDEIKKLQPMNVSLDIDYELAADLNRNYNIQINYELH
FT                 FTMMVDQKVVNALTETKSSMRCYVCGATPKQFNDIEKLPSASNEEAYSYG
FT                 LSPLHKWIRCFEMCIHIAYRITIKKWRVSTENDKAVVAAQKKKIHDRFKE
FT                 EMGLKVDEPKQGSGNTNDGNTARRAFQEEDTFADICGLDLNLVHRIHMIL
FT                 VAISCKSSLNPVRFGDYCRRTAEIYVQLYPWYKMPVSVHVLLLHGSTILA
FT                 CSVLPIGMMSEEAQEARNKDNKVYRRKFARKTSRVDNMSDVFHRLMVTGD
FT                 VAISLLSLKTPRPRTLPREVQEMLKDFRVIQDNDSPDSDS"
XX
SQ   Sequence 4132 BP; 1404 A; 771 C; 774 G; 1404 A; 0 others;
     cacagtgggc cagaatcgcc taaaagtgtg ccaaaattca aaattggcga atgtgaattt        60
     ttatattttt ttcattcgct ttgggaagaa aacattctaa agaatatttt tctacccata       120
     ttttaatatt tagcgagttt taaaagtgtc attatacccc gaacatggga aaatctatat       180
     gttgctctaa aaatgataaa aaggtaactt tacactaggt gttgagaatg tataaaggga       240
     aaagcaatca acttgatact gcgtgcactt cttgcctatt ggtaacccaa ttagaaaata       300
     caatgaccaa atttttggaa gcttcctttt gggaaaaatg agcatttaat ttcacacaaa       360
     aaggggaaaa atgcaatatc tatataaaag tagcatatta attaggattc cggccgattc       420
     ccgcagtaat gttaatctca aaatgtctgc ctaagctttc catgtatggt atttcttttt       480
     gccagaattt gctacactgc atgtgcaggc gcttttcctc cccacgtcca tctattatta       540
     ttaggcataa tcggtacaat tttgtactgt ttacgcacag tcgattcaac tctcgtccgc       600
     gtaaccatgg caacggttac gtgagtgtag agcgtgtagc gtagtgtata ttgctttcac       660
     acgttgatgc aattcggaat catatatgat atcattctag gagaacttgg attgaaataa       720
     acgatggcgg tattaagaag acagcttttt catgctgtgc attcagctgg cttcatttca       780
     gacatcaaac tggcatccaa aacatccatt gatgcattat gtgcatatca taatgtgggt       840
     aacaagtcaa acatcccaca aaaaacttct caagagtttg tcaaagacta ttggacgctt       900
     tctgtatcgt atgcgagaga aatggaacaa gtgtggtcgt cgccaggaat atttcatgaa       960
     agaaaacgag gactggctta atcagacatt gacattcaat actgaagtag aaacatttct      1020
     tgcacagcaa aacagcacag ataccgggac agaaacagag ccaacttcag acttgccagg      1080
     cacgtcacag ggcgcatcca atgtgggacg tccagctaag aattgggaca ctctctcaga      1140
     tcgttctaaa aaaagaaaag cacaccacct tctagaagac agggaaccag aggaacttct      1200
     atatgcggca tctcaaggcg tgtataagaa aaattcaagt ttgaaatatg tgttgaaatt      1260
     cgcaatgcta acaccatcaa gaccagctaa aataagaaaa ctgatatcag aaaaaaagaa      1320
     agaaccatta aaattctcaa gtgaagaagc tttgtcactt ttagttgaaa caggaatgac      1380
     aaaacaggca taccaaacaa ccagacttgc tgcaaaaggt aaaaatgctg atatttatcc      1440
     accgtataac gagattaggg aagctaagga aaaatgttat cccaatgaca tctcagtcac      1500
     ggaagactct gggaaagtac ccctacaaag cctcttagac cacactgcac ttcggataat      1560
     tcaggagcag aaggacacta tcacgcaagt cattgaaaat ttagaagaag atgaacagtt      1620
     caattgtgaa ttggtgtgca aatggggctt tgaccagacg gctcatcagg ccacagtaaa      1680
     tactaaacag aagtctactg caggtacgtg ttttctcctt tccaccctac agagctaaat      1740
     gcgtttattc ttttttttat cagagagacc aacatcatca ttaaagctga ttcatgaaac      1800
     aaataaaaaa aaaaaaagga catatcttaa gtaaaataaa aacacatggt tttaatgctc      1860
     caacaattaa acaagcttag gtttccatta atatttattt cctgataatt atatatatat      1920
     ttcttatgag caatgatatt ttatgttttg ataaaataaa taatcaaagc ctccaaatgt      1980
     tgggataata tagatacatt tggacgtata tagatacatt tggacgtaca tgatgtatga      2040
     gtataacatt ttaagtttca ttctgatgaa attttaaagt aattttgaat tcatgtttgc      2100
     tgtacacgat tatgcatttc tgacataata attttatttt tctactgcag gtactttgga      2160
     tgacagcagc atattctgca ctactctagt tccgctgcaa ttgaaggtaa aagacagtat      2220
     tttgtggcaa aatccggttc cttcttcgtc aagattttgc cgacccattc atcttcaatt      2280
     caagaaagaa acaactgaac tctctcagga agagtataga tctgttcaag atgaaatcaa      2340
     gaaattgcaa cctatgaacg tatctttgga cattgattat gagctggcag cagatctaaa      2400
     taggaactac aacatacaga ttaactatga attgcacttc accatgatgg tagatcagaa      2460
     agtcgtgaat gctctgacag aaaccaagtc atctatgcga tgctatgtct gtggggctac      2520
     tcccaaacag ttcaatgaca tagagaaact tccctccgcg tcaaatgagg aagcttatag      2580
     ctatggactc tcacctctac ataaatggat cagatgtttt gagatgtgta ttcacattgc      2640
     ttacagaatt acgattaaaa agtggcgtgt ttcaactgaa aatgacaaag ctgtcgtcgc      2700
     tgctcagaag aagaaaatac acgatcgctt caaagaggaa atgggtctta aagtagatga      2760
     accgaaacaa ggatcgggaa atacaaacga tgggaacact gcacgcagag cattccaaga      2820
     ggaggacacc tttgctgaca tttgcgggtt agatttgaac ttagtacata ggattcacat      2880
     gatcttagta gcaatttctt gcaaatcctc tctaaatcca gtacgatttg gagactattg      2940
     tcgcagaaca gcagaaatct atgtacaact ctacccatgg tataaaatgc ctgtgagtgt      3000
     gcatgtactg ctgcttcacg gctctaccat tcttgcttgt tcagttctac cgatcgggat      3060
     gatgagcgaa gaagctcaag aagccagaaa caaggacaac aaggtataca gaaggaaatt      3120
     tgcaagaaag acatcaagag tagacaatat gagtgacgtg ttccaccgtc ttatggttac      3180
     aggcgatgtt gccatcagtc ttttatcact taaaactcca cggccaagaa ccctgccacg      3240
     tgaagtccaa gagatgctga aagactttcg ggtcattcaa gacaatgatt ctccagacag      3300
     tgactcgtaa tgagaagcaa aaggacccat acatagagat atggcaaaaa cgttataaaa      3360
     cgttcaaggg tatttcatat ttttaaatca taatcattta tttgattata ttccaaatcc      3420
     ctttgaacat cttctgaaat caatcgatgt ctcattcttt aaattcatat ggaaagggaa      3480
     acccgataca ataaacagaa aacaagtagt ttgtaaatac gaaaatagtg gactaaaaat      3540
     agttgatgcc ggacaatttt atagagagaa atttaaaaat gctccaattg tgcgtcttag      3600
     gtccagaaac ccctgaaaag tttccctagt cagtgtcata tgaatctgtt tatgtgttac      3660
     aatgcatgtt ggccttttcc aatcagaaaa ctgtatttta atgacgtgag agaaatttga      3720
     aaatgctcca atagtgtttc ttaggtccag aaacccctta taagttccac taatcagtgt      3780
     aatatgaatc tgtctatgcg ttacaatgaa tatttgcctt gtccaatcag aaaacagtat      3840
     tttaatgacg tcagagaaat ttgaaaatgc tccaattgtg tttttttagg tccagaaacc      3900
     ccttataagt tccactaatc agtgtaatat gaatttgtct atgcgttaca atgaatattt      3960
     gccttgtcca atcagaaaac agtattttga tgacgtcaca cggatttgaa aatactccca      4020
     tcgaattcta ttggtctgaa aaccccttac atactttaac caggaacttc attaaccttc      4080
     ttcaatgaga aattaatttt ggcacacttt gaggcggttc tggcccactg tg              4132
//
ID   U1_LV       repbase; DNA   ; SPU   ; 1398 BP.
XX
AC   X01749;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   L.variegatus repeat unit with gene for small nuclear U1 RNA.
XX
KW   LVU1; Repetitive sequence; U1_LV.
XX
OS   Lytechinus variegatus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae; Lytechinus.
XX
RN   [1]
RP   1-1398
RA   Brown T.D., Morris F.G., Chodchoy N., Sprecher C., Marzluff F.W.;
RT   "Structure of the sea urchin U1 RNA repeat.";
RL   Nucleic Acids Res 13, 537-556 (1985).
XX
DR   GenBank; X01749; Positions       1    1398.
XX
SQ   Sequence 1398 BP; 429 A; 275 C; 261 G; 429 A; 0 others;
     aagctttcgg gtctactacc aactagagcc catggaacga gatattaaag agagcaaagt        60
     ataattttgc ccaagtaaga cgacgaccga taaaagaaag gttgacccga taacaggatg       120
     cgagtaagct gacgcttatg tcattataat ctgcaacgtc agtaaagtta ttgtgaagtt       180
     catgaatatt cacatcctta cttcttcaca tcttacgtgc aattttgtac ttgttattac       240
     gtttaaatta tagaattaca tggatacgtc attaatgttg ctccagagag gggcacagag       300
     atttgaggtt tctttctctc aaaacttgcc aaaattgtac aaattcataa aatcatgtga       360
     ctgttttctc tttgtagtgt gagatgtttc actgctttct atcgcagata agatttgatc       420
     aagtacggcg accgatggat ggggagcata cttacctggc gcaggggtcg cattgatcaa       480
     gaaggatgca cccccagggc gaggcttgcc attgcactcc ggcttgctga accttgcgat       540
     tcccccaaac gtggggaact cgggcgtaca atttatggta gcggagatct gcgttcgcgc       600
     tatctcctac aattcaacta atgcaaagaa agaaaataaa agctccccga aaaactctga       660
     tggtgacatg aatggactaa tcccttccaa tttttgggga atttcaacct tatcaggttt       720
     ttcaaaccac tagtttcttt attacttaag gggacatgat tggcattcct ttcaataaaa       780
     gctcgggttt aaatccgtgt gacaaaaata gcatactact ttaacatctg cttcatctca       840
     actgcgaaat gtatgtcgaa ataaactttg ctaagttttg aaagattcta atgagattta       900
     aaaaaaatga ttttccggca gattggctcg ctcattttac tcggtcgcaa gtttccgata       960
     aaaaccccct ccaaatagtt ttctcattga aacaacgtca tccaaaatac gtttcaagtt      1020
     aatccttcca atcaatacat attgtaactg ggtatatttt aaaacctatt ggcccatcgt      1080
     tgtttctttt ccatatgaac attagttagt ggttaaaagt tgcatcatga ttcgtaacta      1140
     aaaaaaaata aatgacccgt ttaaagcgtc agcttggacc aaccaacatt ttcgtcacca      1200
     atctataaaa aggtaaaata tccaggtgca tggtcatttc ccaggggtgg agtccaggtt      1260
     attgactact catttaatgt gtatgaacta gtttcgattt tgtggtgcat tttctcttta      1320
     tcccttgata tggaaataaa caatcatttt aactttatcg agatattaag cctcacattt      1380
     cattctaaaa tgagacga                                                    1398
//
ID   CR1-4_SP    repbase; DNA   ; SPU   ; 1119 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a partial consensus.
XX
KW   CR1 superfamily; CR1-4_SP; non-LTR retrotransposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-1119
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-4_SP, a family of CR1 non-LTR retrotransposons in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 220-220 (2004).
XX
CC   [1] Consensus
XX
CC   CR1-4_SP is a family of CR1 non-LTR retrotransposons. The
CC   consensus sequence represents the 3' terminal portion of the
CC   autonomous CR1-4_SP retrotransposon. It encodes the C-terminal
CC   portion of reverse transcriptase. The 3' terminus is composed
CC   of the (TAT) microsatellite.
XX
SQ   Sequence 1119 BP; 339 A; 228 C; 170 G; 339 A; 16 others;
     tataykcwkc ycwtacagca kattgttcar amacacagya tyaattatca tatgtatgca        60
     gatgacttac agctttattt tatttgcaaa cctgtccaga aaatgtgaag aaaattgaaa       120
     actgtatagc tgatgtaagg aactggatga twgagagycg cytaaaacta aatgatgcaa       180
     aaacagaatt cattttgctt ggcaacagta gacagctcag gtaaaattaa ggtttctcat       240
     gttcaagttd gttctgcccc tgtatctcct gtacatcaag ctaggaatct tggtgtaata       300
     tttgattctg ccatgtcact tgaaacccat gtttcaaatt gtgttaaact ggccaattgt       360
     aatctacgta atatccgtgc aattaggcaa tatctctcac ctcaatccac ccaacagtta       420
     gtacatgctt ttgttacttc gcaccttgat aattgcaatt cattactctt tcgactaccc       480
     gccaaccaaa ttaaccgatt gcaaaaagtt cagaatgctg ctgctcgcct tgtaactaac       540
     accagaagat catcacatat cactcctatc ttgaaatctc tgcactggct ccctgttcaa       600
     cagcgtgtga tctataaaat tctactctta acctatcgtg cactaaatga tctagctcca       660
     gaatatattt catcccttct atcaccccac tctgcaggtc gttctggttt acgttcatca       720
     cataatatta grcttaaaga aatacgtacc aaaagaaatt ggggggatag agcatttgca       780
     tcagcagctc cttctttgtg gaataagtta cctttctcta ttcagacggc caacactctt       840
     tctactttca aaactgggct taaaactcac ctgatgctca atgcatattg ttaaatttca       900
     atgttctttt tatacaatgc atgcaaaaca aataatcaca ctgtgccaca ttgtatgtac       960
     catggcacca tgaagttgtg tgatctaatg caagttaaca tttaatattt ctttaatctt      1020
     aagtatgttg aatattaatt taaattattt gtatgcgcct tgagcatctc tagagatgga      1080
     tatgttgcgc tttataaata ttgttattat tattattat                             1119
//
ID   CR1-1_SP    repbase; DNA   ; SPU   ; 1273 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a partial consensus
DE   sequence.
XX
KW   CR1 superfamily; CR1-1_SP; non-LTR retrotransposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-1273
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-1_SP, a family of CR1 non-LTR retrotransposons from the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 217-217 (2004).
XX
CC   [1] Consensus
XX
CC   CR1-1_SP is a family of CR1 non-LTR retrotransposon. The
CC   consensus sequence represents the 3' terminal portion of the
CC   autonomous CR1-1_SP. It encodes the C-terminal portion of the
CC   reverse transcriptase. The 3' terminus is composed of the
CC   (TTGAA) microsatellite.
XX
SQ   Sequence 1273 BP; 417 A; 171 C; 170 G; 417 A; 5 others;
     tgttatttct attatatata aatgatcttc ccaattgctc aagtgaattg aagtttatat        60
     tgtttgccga cgataccaac attctttact caacagataa ttattcatca attaatgatg       120
     atttgaacaa taaattgacc aacgtgtcat actggtttaa tagtaataga ttgtctttaa       180
     atactgaaaa gtccaattta atatattttt acaatagaaa atcacatatt cattccaaca       240
     tttctaaaca tttaaaaata tcaatgaatg ataaaattat ccaaagagtc cacacagtta       300
     aatttttagg cgttttcatt aatgaaagta tgtcatggac tgaccatatt ttgtatatta       360
     ctaataaagt gtcaaagagt gttggtatcg ttggaaaact ccgcacagtt ttacctcaaa       420
     gcatattgat attgttgtac aatacattta ttttaccata tttgacttat tgtaatactg       480
     tttgggcaaa tacctacaag tcaaaattga actctctttt ttkgttacaa aagaaagtgg       540
     ttagaatttg ctctctaact tcttatcgtg cccatactag accatnntta tttatgaatc       600
     tcaagtttct tgatgtgtat caattaaata aatattgcat cttaatttta ttatttaaac       660
     acaatcaagg ttttttgccc agttcactta acaatatgct ttcactcaat aatgcaattc       720
     atacttataa tacaaggaat akaaataaat accatctatg ggttgttgaa aaatcttatt       780
     tattattttc tttcagacat aaagcaccaa caatatggaa tactttgcca aataacataa       840
     catctataat gaattacaat ggatttaaaa gaagtgtaaa gcagcatcta atcacatgtg       900
     atttgggtag aatacttttc cactttatat ataatgtgtg tgtgtctgtg tttttgtagg       960
     gcttgtatgt tttttgtttt ttttttttct gttgtttacg agttttcttt ggggcaaaat      1020
     aagtttatgt aatttcaaat ctttattatg ttcatcacaa tttgtttaat tattttdggg      1080
     gagatatctc gacaaactca tttatttggg tttttataac ttcccttttt ccattattgt      1140
     ttaatatttt aatgtactta tgtatattct agtgaaagat tttgcatgtt atttacagta      1200
     ccttttgcaa atgtatgtgt tcttgtaatg tgatttttat ggaaatgaat aaacttaatt      1260
     gaattgaatt gaa                                                         1273
//
ID   Tc1-N2_SP   repbase; DNA   ; SPU   ; 862 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous Mariner/Tc1 transposon - a consensus sequence.
XX
KW   Mariner/Tc1; nonautonomous DNA transposon; Tc1-N2_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-862
RA   Kapitonov V.V., Jurka J.;
RT   "Tc1-N2_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 245-245 (2004).
XX
CC   [1] Consensus
XX
CC   Tc1-N2_SP is a family of nonautonomous Mariner/Tc1 transposons.
CC   These elements are flanked by the TA target site
CC   duplications. The consensus sequence is a palindrome. The sea
CC   urchin genome harbors over 1000 of Tc1-N2_SP elements.
XX
SQ   Sequence 862 BP; 262 A; 159 C; 160 G; 262 A; 22 others;
     cactgtcgct cataaaggtg gaatattttt gttttacccc aatttatgga attattttaa        60
     aaataattta aaaataatag atctagataa tagtatacat tctcagattt tattgaataa       120
     taatttgcca atgtgtgttt tgcgtgactg ctaaagcatg tgtatgctac tatgctaatc       180
     aactagcnca tcnacgcggt ttwgtcatcc tgggggctca cagtaacgag gccattgctt       240
     agccantgaa tcatgactgt acgcagcggg gctagggtas gkgcmgyycc cayaaatama       300
     aaataarmaa agaaaatgca ataaattwtc aataattcat tgcattttcc cccggtcccc       360
     aacagaaaaa aatcctctgt acggccatgc tttrwgrcwy aaggcatggc cacatagagg       420
     atttttttat gttggggacc ggggkaaaat gcaatgaatt attgaaaatt tattgcattt       480
     tctttgtttt tttttatttg tgggaactgc cccctaccct agcccccgct gcgtacagtc       540
     atggttcagt ggcaaagcaa tggcctcgta actgtgaggc cccaggatca aaaccgtgtc       600
     gatgtgctat attagtgccc ttttgtgrgg cattaatcct cattactgtc akttatgact       660
     taagggcgta ggtcccctag ttgataagca tagtagcata cacatgcttt agcagtcacg       720
     caaaacaaac actggcaaat tattattcaa taaaatctga gaatgtatac tattatctag       780
     atctattagg aataaatcat tgtcaaaata attccataaa ttggggtaaa aataaaatat       840
     tccaccttta tgagcaacag tg                                                862
//
ID   DNAX-1_SP   repbase; DNA   ; SPU   ; 691 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus sequence.
XX
KW   DNAX-1_SP; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-691
RA   Kapitonov V.V., Jurka J.;
RT   "DNAX-1_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 223-223 (2004).
XX
CC   [1] Consensus
XX
CC   The genome contains 20-50 copies of DNAX-1_SP. These elements
CC   are characterized by 13-bp terminal inverted repeats (one
CC   mismatch). Remarkably, target site duplications are not
CC   detectable.
XX
SQ   Sequence 691 BP; 164 A; 150 C; 158 G; 164 A; 3 others;
     cacgaagaag aattacacac aaaactcgcg catgcgcaat gcgctcttct gttcgctcaa        60
     gcccgactga cgtcattttt cattcataaa agtgctagcg tcacaatgct ygtagttgat       120
     tgggtgttta ctcatttcat ttgcatattt tcccacaatg ttaaacctat gagtgcgatg       180
     atttctgcct gcgacttctc gattacgttg atatcaaact cgttatattt ccatccygac       240
     ttcgattttt gaacaatttt ttcgccatcg gtgtcatcga tatttctagg tactttcagc       300
     aaaaatcgta tggtggttct ttgtttcggt aagtcatatt ttttgatgat ttcgtcngaa       360
     gtttttgtaa aggatatgta tgtgtaggtt gaagtgtgtg taaagctacg tgcaaattgt       420
     atgtgagcga catgagtgtg tagagagcga catcgttgaa accatataca ctgaatgtgt       480
     ctttggtcgc cattttttgc ttggctgttc gagtttagtg cagggccccg ctcccgcaac       540
     acggccgcta caatacacgg tacaatacac cgcgcacagt gtagcgaatc gcccatgcct       600
     cgcagctagc agacaagcga gggtcgcgcg atcagccaat cagcggcgcg tatttccgtt       660
     cactgagttg gataggggat tcttctacgt g                                      691
//
ID   CR1-3_SP    repbase; DNA   ; SPU   ; 849 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a partial consensus.
XX
KW   CR1 superfamily; CR1-3_SP; non-LTR retrotransposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-849
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-3_SP, a family of CR1 non-LTR retrotransposons in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 219-219 (2004).
XX
CC   [1] Consensus
XX
CC   CR1-3_SP is a family of CR1 non-LTR retrotransposons. The
CC   genome harbors ~1000 copies of CR1-3_SP that are ~90%
CC   identical to their consensus sequence. The consensus sequence
CC   represents the 3' terminal portion of the autonomous CR1-3_SP
CC   retrotransposon. It encodes the C-terminal portion of reverse
CC   transcriptase. The 3' terminus is composed of the (ATGT)
CC   microsatellite.
XX
SQ   Sequence 849 BP; 233 A; 158 C; 148 G; 233 A; 0 others;
     tctaggtgtt gttcttgact cttctttgac catgtctcaa caggttactt cactgtgtag        60
     tcattacatt ttcatttgta taacatatat agggtcagaa ggatgttaac tgatgaggca       120
     tgccatcatg ctattcgctc tcttgtttta agccgtcttg ataatgccaa ttctcttgat       180
     taatattaat gtttcggata tcgatagact tcaacgaatc cagaatcgtg cagcccgtat       240
     tgtttcaaat gcaagaaaat atgatcacgt gtctcctttc tttaaacaac tacactggtt       300
     aatacctgtt cacaagagaa taatgtataa agttgcacta tttgtttata aatccatgta       360
     taaccttatc ccatcctata tttctagtct gttttgtccc atccagcaat caagatattc       420
     attacgctca aggtcagatc ctcttcttct gcaaatcccc cgcatcaatt cgaagaaggg       480
     tcaacaaaat ataacttttt ctggtcccac tatttggaat agtctcccat taagcattcg       540
     ttcctgctcc tcagtcggat catttaagag aaatctcaag acttatttgt tttctttgta       600
     attgtttttt gacaggcgtt gtgtggagtt gtgtgggatg tgaacgaggt tgtgtactgt       660
     atgaaccagg cttggttcat gtggtgcaca actttttgaa ttactttaca cagctttaca       720
     caacaaattt tttacagtgt atgcacttgg agagcaaaat aattattctg ttttatttac       780
     taatgtaaag cgctttgagc atgtttatgt aaaggcgcta tataaatatc aatatgtatg       840
     tatgtatgt                                                               849
//
ID   D88I        repbase; DNA   ; SPU   ; 119 BP.
XX
AC   X01062;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.drobachiensis repetitive sequence D88I.
XX
KW   D88I; Repetitive sequence.
XX
OS   Strongylocentrotus droebachiensis
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-119
RA   Johnson A.S., Davidson H.E., Britten J.R.;
RT   "Insertion of a short repetitive sequence (D88I) in a sea urchin gene:
RT   a typical interspersed repeat?.";
RL   J. Mol. Evol 20, 195-201 (1984).
XX
DR   GenBank; X01062; Positions      37     155.
XX
SQ   Sequence 119 BP; 39 A; 30 C; 21 G; 39 A; 0 others;
     tttattatat acctcactta agaaatccag ccatctgatc ggtcaaaatt gcaggccgag        60
     ggcaatggca caattgtaac ctccccgaga gcgtataaaa ccaactatgt ctctcaaag        119
//
ID   Transib-N1_SP repbase; DNA   ; SPU   ; 884 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib-N1_SP is a family of nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Interspersed Repeat; Non-autonomous.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-884
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived from
RT   Transib transposons.";
RL   PLoS Biology (2005).
XX
CC   [1] Consensus
XX
CC   Transib-N1_SP is a family of nonautonomous DNA transposons that
CC   belongs tothe Transib superfamily. The genome harbors ~100 copies of
CC   Transib-N1_SP that are ~94% identical to the consensus sequence. These
CC   elements are characterized by 5-bp target site duplications and 60-bp
CC   terminal inverted repeats (2 mismatches).
XX
SQ   Sequence 884 BP; 270 A; 167 C; 166 G; 270 A; 2 others;
     cacagtgggc cagggaggaa ccaaagtgcg ccaaaactca tttttggtga tttatttttt        60
     tcaatttttt ttcttgccca gttgaaaggt aatacattga ggaatacctc agtaaaatat       120
     ttaattccgg tatgcacaat aagggtataa atttactcct tcaaacagca aaatcctaca       180
     tattcacagt tttagtgcaa aagtgactta ttttataaat ctttcaattt aacatgaagt       240
     ttttaagtta ttgatatgaa attgctctca catattcctg atagttcatt tcgttgcatg       300
     aatgggttaa aattaataga aacacaatct tcatgatata ttatagggta attcactgaa       360
     aaatggacta attatccatg tttttttata aatccagagg aaatgtttag atctccgcag       420
     agttccgctt aaattttaat accaccattt tttctgatgt ctaagcttya agttgatacc       480
     aaatttggct gcccgatctt gcccgttgtt atgttagagc cgatttccct tgccacattg       540
     ccccgaaaaa tgtggggttt ttttkggtcc gcggctgaat catgaaggat tcgcggtcat       600
     aaatcacggc gcgtgggggc gcgtgacact tgttctgaca ccgcggacca aaataaacac       660
     attttttcgg ggcaatgttg caaggaaaac ggctctaaca taataacggg cagaatcggg       720
     cagccaaatc tggtatcaac ttaaagctta gacatcagag aaaatgttgg taataaaatt       780
     taagcggaaa tccctggaaa tccaaacatt tcctctggat ttataaaaaa taaatccccc       840
     aaaatgagtt ttggcgcact ttggttcctc cctggcccac tgtg                        884
//
ID   SU7N33      repbase; DNA   ; SPU   ; 195 BP.
XX
AC   X05414;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus histone H4-H2B spacer 7N33 intermediate repetitive
DE   sequence.
XX
KW   Repetitive sequence; SU7N33.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-195
RA   Yager N.L., Kaumeyer F.J., Lee I., Weinberg S.E.;
RT   "Insertion of an Intermediate Repetitive Sequence into a Sea Urchin
RT   Histone-Gene Spacer.";
RL   J. Mol. Evol 24, 346-356 (1987).
XX
DR   GenBank; X05414; Positions      20     214.
XX
SQ   Sequence 195 BP; 84 A; 29 C; 26 G; 84 A; 0 others;
     tcaagttcaa gttcaagttc gtttatttac actcatcatt aaaaatacaa gaacatatac        60
     aatcaaatac ggaataatca cacataaaat atcatacatt caataacaac aaaataacat       120
     aacataatgg gagtgaaggg atgagctaaa aaggagtatg gtccttatgt tagagttcat       180
     tccttagtat aatat                                                        195
//
ID   Tc1-N1_SP   repbase; DNA   ; SPU   ; 553 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous Mariner/Tc1 transposon - a consensus sequence.
XX
KW   Mariner/Tc1; nonautonomous DNA transposon; Tc1-N1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-553
RA   Kapitonov V.V., Jurka J.;
RT   "Tc1-N1_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 244-244 (2004).
XX
CC   [1] Consensus
XX
CC   Tc1-N1_SP is a family of nonautonomous Mariner/Tc1 transposons.
CC   These elements are flanked by the TA target site duplications
CC   and are characterized by 95-bp terminal inverted repeats.
CC   Tc1-N1_SP elements are ~90% identical to the consensus
CC   sequence. The sea urchin genome harbors over 1000 of Tc1-N1_SP
CC   elements.
XX
SQ   Sequence 553 BP; 181 A; 97 C; 91 G; 181 A; 2 others;
     cagtgcgtcc cagaaaaaac gaaaccgaga attatcgatg ttttatcata acttaatcac        60
     aattataatt aataaatgac acatatttgt aaagcttaga tcctcctctt tcatttgatg       120
     caactcatat gatgcatatt tcacgcatga gtgattaaaa acaatttgaa gagaggaaac       180
     caaaaagtca tttggcgggc ggtatctgaa tttcaaagag aaaatcacat ttctagaaag       240
     ttcaktttct gccctttcat atgacacctc aatcaggaaa aatgagccag gaataacaaa       300
     gttctgtttg tttaaagtaa tgcttgcatt tccataattt gattaaacga attcgttttc       360
     actggctgcc tgccgtagca acaaacagag ttgacaaaag acttaactcc gtttcgttga       420
     cgatcagcca tgcatgaart ctttcgtctt tgttatgctt tacaaatatg tgtcatttat       480
     taattataat tgtgattaag ttatgataaa acatcgataa ttctcggttt cgtttttttt       540
     ctgggacgca ctg                                                          553
//
ID   DNA6-1_SP   repbase; DNA   ; SPU   ; 364 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus sequence.
XX
KW   DNA6-1_SP; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-364
RA   Kapitonov V.V., Jurka J.;
RT   "DNA6-1_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 222-222 (2004).
XX
CC   [1] Consensus
XX
CC   The genome contains several hundred copies of DNA6-1_SP. These
CC   elements are characterized by 6-bp target site duplications
CC   and 11-bp terminal inverted repeats (two mismatches).
CC   Classification is unknown.
XX
SQ   Sequence 364 BP; 166 A; 43 C; 75 G; 166 A; 0 others;
     caggggtgat agtgagcact aaaaaaaaaa taggtttttt tgttttcccc tcaaccacgc        60
     cccccttgag taaaaaaaaa aaagaggatt cgcggggaaa aaatggcatc taacaacatt       120
     cccccctttc gagtaagaaa attgggagaa aaaaataggg caaaataggg aagaatagag       180
     aaaataaggg ggaaatcggg aaaatcagga taaaaaggga agaaaaaaaa attggttaaa       240
     aaaaaaaaaa aaaaaaaaaa atctggattt tttttttttt ttttttaaat cgggaagaaa       300
     aaaaaaatcg ggaaaaataa aaaaaatcgg gaaaccgatt taaatcgggt ttttatcagg       360
     cctg                                                                    364
//
ID   Harbinger-N1_SP repbase; DNA   ; SPU   ; 500 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of nonautonomous Harbinger DNA transposons - a consensus
DE   sequence.
XX
KW   Harbinger superfamily; Harbinger-N1_SP; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-500
RA   Kapitonov V.V., Jurka J.;
RT   "Harbinger-N1_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 237-237 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors a few hundred copies of Harbinger-N1_SP
CC   elements that are over 90% identical to their consensus
CC   sequence. These elements are characterized by 3-bp target site
CC   duplications and 14-bp terminal inverted repeats.
XX
SQ   Sequence 500 BP; 141 A; 100 C; 125 G; 141 A; 2 others;
     gggtgcgttt atcgaccaaa tttttggcta gaatcaggtt tctcaaacgt ctttcaggca        60
     aatttagaag gtgataaacg caaagccttt ttcaaacgtc tttagatatg ggcatatcta       120
     aagacgcaaa aaggtgtgtt ttgaatgtga catacagcca gaatcacgtt tctgagagat       180
     gataaacgca aagctgtttt gaaccycaca tacaaatcgg acctcccagg ttaatttccg       240
     gttcggagaa tagcgcgcca tgtgttgtgt catgttgttg tacaagcatg tgtgtgtagt       300
     tgacctccga gaaactgtct gcttcccggg tcaaacggcg caaagcagct gcgcagagac       360
     aaggccttta ttttgaatcg tgaagagacg ataaacgcga catcccgcaa atcacgwtcg       420
     tatagtgggg ttcgatagtg gggtttgata gtggggtacg atatgtacat atctagtggc       480
     aagacccgat aaacgcaccc                                                   500
//
ID   CSP2137     repbase; DNA   ; SPU   ; 226 BP.
XX
AC   J01197;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2137.
XX
KW   CSP2137; Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-226
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01197; Positions       1     226.
XX
SQ   Sequence 226 BP; 62 A; 45 C; 30 G; 62 A; 0 others;
     aattcgtttg ataaaattat ggagagctcg catgatacgt catagagttg ccaatttgtg        60
     tttgattgat cacaacttca aaaatcctaa cttcattatt tttaatcgga atttgctcaa       120
     actttcactg acttgtttct ctcatttttc tactcctatt taaactaact taatttcagg       180
     gtggactttc cctttaaagc ctcgttacga attatttcat tcaccg                      226
//
ID   CR1-2_SP    repbase; DNA   ; SPU   ; 1128 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a partial consensus
DE   sequence.
XX
KW   CR1 superfamily; CR1-2_SP; non-LTR retrotransposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-1128
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-2_SP, a family of CR1 non-LTR retrotransposons from the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 218-218 (2004).
XX
CC   [1] Consensus
XX
CC   CR1-2_SP is a family of CR1 non-LTR retrotransposons. The
CC   consensus sequence represents the 3' terminal portion of the
CC   autonomous CR1-2_SP retrotransposon. It encodes the C-terminal
CC   portion of reverse transcriptase. The 3' terminus is composed
CC   of the (TCAAT) microsatellite.
XX
SQ   Sequence 1128 BP; 356 A; 161 C; 139 G; 356 A; 2 others;
     gtgtcttttg tatccgataa caatattgaa aatttgattc ttgattttam taatgaatta        60
     ttgaaaataa attcatggtt gatctctaat aaattaattg taaatactav aaaaaactca       120
     ctatatgatc ttttctaata tgtttatcga tcgtgacacg ttggttgttt ccttaaatga       180
     taatgtaatt aatcgttgta gctccctgaa atttttaggt gtaacaattg acagtaaatt       240
     atcttggaag gagcacattg atgttatctg cacgaatatt tctaaaggta taggtatttt       300
     aaataaaatt aaacattttc cttcaaatat tttgattatg atttataatg ccattatatc       360
     tccttatttt aattattgta accttgcctg gggatcctca actgatcatg caatgagaag       420
     attattatgc ttacagaaaa gagctattcg tttagtctta catgccgatt attttgctca       480
     tactaaacct ttatttctaa aattaaaact tttgaatgtc ctagatcttt gtaattatag       540
     ttttgcaata tttatgtact tatgttttaa taatttcata ccaattagtc tttccagcaa       600
     attttgtctt aattctgcat tacattcata taatactcga agttcttcta attttcattt       660
     aaataaaata agactaaata taactaagaa atcaatattt tttaaagggc cacaattgtg       720
     gaataatata cctcaagata taaaatctag tccatcaatt aacgttttta aaaggagata       780
     taaatcattt ttaatccaac aaaataaata aagattgatt atgtacacgg tctggttttt       840
     gttttgtttt tgtccccccc ccccccccct acttttaggt tttttttttt tttttttttt       900
     ccttctcaaa caacaatata atactgtatt atactttatt actgttttgg tggcagcacc       960
     aataaagcct ttggctttcc tagctgtctc cacattcata tatatttttg ttgttgtatt      1020
     gtattgtaaa tgtttctctt taacttgtac gctatgtttt gtattttata tgtttgttat      1080
     gatgttttta tgatgaatga aataaagatc aattcaattc aattcaat                   1128
//
ID   CSP2090     repbase; DNA   ; SPU   ; 167 BP.
XX
AC   J01187;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2090.
XX
KW   CSP2090; Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-167
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01187; Positions       1     167.
XX
SQ   Sequence 167 BP; 44 A; 36 C; 36 G; 44 A; 0 others;
     aattcgggat caaaaccgtg tcgatgtgct atattagtgc ccttttaggg gttcctgact        60
     gacctaaagg tttataatta tcattgaagc atgagctaaa tccaggattt tgtttcagaa       120
     tctgaggcct gtcttcatca gctcgagatt gccaaataac ccgcccg                     167
//
ID   piggyBac4_SP repbase; DNA   ; SPU   ; 733 BP.
XX
AC   .
XX
DT   07-2004 (Rel. 9.11, Created)
DT   07-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Nonautonomous family of piggyBac DNA transposons - a consensus
DE   sequence.
XX
KW   piggyBac; DNA transposon; Interspersed Repeat;
KW   nonautonomous DNA transposon; piggyBac superfamily; piggyBac4_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-733
RA   Kapitonov V.V., Jurka J.;
RT   "piggyBac-N4_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(11), 309-309 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors over 1000 copies of piggyBac-N4_SP elements
CC   . They are characterized by the TTAA target site duplications
CC   and imperfect 200-bp terminal inverted repeats.
XX
SQ   Sequence 733 BP; 259 A; 119 C; 127 G; 259 A; 2 others;
     aggaaaccta aacccaaaga ataagtgtag gtattctgaa aaatgagatg tattcctgcc        60
     ctttgatgta caatattcct tacgaaaatg tacaagatat atataaatga agatattcct       120
     ggcatgatgt gatgcctttc agcatgacat gggcgcagcc attttcttga aaatgtgacg       180
     tacctgttga agttgtacat gtatcatgca ccaagcttta gttggaaaga atttttaaat       240
     caataacgaa acctttactt ttcaatgaaa aaaaataata actgagatga tagaaattat       300
     attaggtgaa aaataaataa caggggmaca attgtaacaa aattcattta taaatactac       360
     actatagcag ttgacaaatc tatttcattt atgagaaacc ttcaccccag aagagcacta       420
     acttatttat gcaatttgcg ttctggcaat tatagtacaa aggataatag caggtgaatg       480
     aaatgcttca tcaccacaca cgtctgggaa agaagcatcc ataaatttga atacatttac       540
     ttgataaacg acttcgcata gtacgtcaca ttatcaagaa aatggcgatg cccatgtcgt       600
     gctgagaaac tgtactttat ttttgcttta tacctctctc atacactttg gtggggaatc       660
     ttgtagattt atgggcaata atataataaa tctctcagaa taagtaaagt tattwcttgg       720
     ggttcggttt cct                                                          733
//
ID   piggyBac3_SP repbase; DNA   ; SPU   ; 188 BP.
XX
AC   .
XX
DT   07-2004 (Rel. 9.11, Created)
DT   07-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Nonautonomous family of piggyBac DNA transposons - a consensus
DE   sequence.
XX
KW   piggyBac; DNA transposon; Interspersed Repeat; CS2111;
KW   nonautonomous DNA transposon; piggyBac superfamily; piggyBac3_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-188
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "Repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
RN   [2]
RP   1-188
RA   Kapitonov V.V., Jurka J.;
RT   "piggyBac-N3_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(11), 308-308 (2004).
XX
CC   [2] Consensus
XX
CC   The genome harbors over 10,000 copies of piggyBac-N3_SP
CC   elements that are ~87% identical to the consensus sequence.
CC   These elements are characterized by the TTAA target site
CC   duplications and imperfect 15-bp terminal inverted repeats (4
CC   mismatches). Preliminary classification, based on the TTAA
CC   target site duplications, - piggyBac superfamily [2]. A
CC   portion of piggyBac-N3_SP (pos. 182 -97) is 86% identical to a
CC   portion of the CSP2111 repeat [1]. The second portion of
CC   CSP2111 (pos. 1-62) is a part of ankyrin-encoding unit. In the
CC   sequenced genome, these two portions are dispersed
CC   independently.
XX
SQ   Sequence 188 BP; 50 A; 42 C; 51 G; 50 A; 0 others;
     agcctatctg cactagtttg gccaggaggg attagacctc cctgcgtggt cactgacagg        60
     tggttatctc atcaaatcag ctctcaatta acataagaaa aaggggatca tgggggacca       120
     acgggtaccg cttaggcatt gtttgctata tagagggcgc aagtagctac aagtagtgca       180
     gtcccgct                                                                188
//
ID   CSP2112     repbase; DNA   ; SPU   ; 257 BP.
XX
AC   J01196;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2112.
XX
KW   CSP2112; Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-257
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01196; Positions       1     257.
XX
SQ   Sequence 257 BP; 70 A; 54 C; 61 G; 70 A; 0 others;
     aattctaaat cctgaaatgt catgcgctct cttatctcac cactggtcaa tagttgaaga        60
     ttagcgcata acttttcggc ggcttggagc atggggtcaa aggagagcgg cttgattcca       120
     gtccttctct atcacgtccc ataaggaccg gtattcataa tacgagaaga gggttggtat       180
     tcataatacg agaagagggt cgctgttcat aatgcaatat cggggtcgtg tcaaattttc       240
     aaatttcgag accaccg                                                      257
//
ID   SPRP2       repbase; DNA   ; SPU   ; 247 BP.
XX
AC   K01794;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus histone H1-H4 spacer repeat.
XX
KW   Repetitive sequence; SPRP2.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-247
RA   Vitelli L., Weinberg S.E.;
RT   "An inverted sea urchin histone gene sequence with breakpoints between
RT   TATA boxes and mRNA cap sites.";
RL   Nucleic Acids Res 11, 2135-2153 (1983).
XX
DR   GenBank; K01794; Positions     247       1.
XX
SQ   Sequence 247 BP; 50 A; 64 C; 71 G; 50 A; 0 others;
     cggacgaccc gggactgtct cctcccacgt acgcaacaat gccttatatt gatggcgttg        60
     ccgagcctca accggattgc agcgagtatt gttacaccat tgcggacttg ggtgacgaga       120
     ttcggcatca ttcggtatgc gggactggag tgcggagact ccccattcga gtgcgccccc       180
     tcgtggcgag tattcgctag cattattaca tgcatttatg tagagaggcc tgtgttgaat       240
     gctcgag                                                                 247
//
ID   CSP2034     repbase; DNA   ; SPU   ; 498 BP.
XX
AC   J01186;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   S.purpuratus repetitive sequence csp2034.
XX
KW   CSP2034; Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-498
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01186; Positions       1     498.
XX
SQ   Sequence 498 BP; 116 A; 101 C; 75 G; 116 A; 0 others;
     aattccattt cccgtttacg tgtaatcgcc atgggaaatg tgttggtata tcggtaacgc        60
     acttgacttc caagctcgag atacctggtt tgagtccggg tgtctccaac aatttttgtc       120
     ttcatttctt ttttcttttt gacctttcac tgtaccatct cctttgatta ttaaaacatt       180
     attcgcaaat aatgtaataa acaaccgtat ttaccttatt attacccttt tttccactta       240
     atccattatt tagtgcgtgt agtccctatg ggggatgact tttttttcaa atctagattc       300
     tacattcctg tcttttgcga gcaatatcgc cgttatttct gcttggattt agttgatttt       360
     tgagtatgtt gtagctgaga ctatatgcta tctaaatcat tcctcatttt ttcaattaga       420
     tatcaggatc acgcttatga tcatgatcat tatcatctca tttctcactg agtattattt       480
     atatgtctgt ctctcccg                                                     498
//
ID   CSP2111     repbase; DNA   ; SPU   ; 155 BP.
XX
AC   J01195;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2111.
XX
KW   CSP2111; Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-155
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01195; Positions       1     155.
XX
SQ   Sequence 155 BP; 40 A; 45 C; 27 G; 40 A; 0 others;
     aattcggatt aacctcggct ccttgactga tcagatattt ggtgacatca agatgaccac        60
     agccccactg cactacttat agcctattgc gccctctata tagcaaacaa tgcctaatag       120
     gtgaccattg gtcacacatg gtcccctttt tcccg                                  155
//
ID   Penelope-1_SP repbase; DNA   ; SPU   ; 1122 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   A family of Penelope Non-LTR retrotransposons - a partial consensus
DE   sequence.
XX
KW   non-LTR retrotransposon; Penelope superfamily; Penelope-1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-1122
RA   Kapitonov V.V., Jurka J.;
RT   "Penelope-1_SP, a family of retrotransposons form the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 243-243 (2004).
XX
CC   [1] Consensus
XX
CC   The consensus sequence represents the 3' terminal portion of
CC   the autonomous Penelope-1_SP retrotransposons. It encodes the
CC   C-terminal portion of a reverse transcriptase. The genome
CC   harbors several hundred copies of Penelope-1_SP. The ~180-bp 3
CC   terminal portion forms often inverted repeats.
XX
SQ   Sequence 1122 BP; 313 A; 299 C; 250 G; 313 A; 5 others;
     ccacacagac cagtacatag cgtttgactc tcaccatccc atatcggtga agagaggtct        60
     agtgaaatgt ctatttgaca gagcttcacg cattgtgaca agtccacaac agccatgcaa       120
     agacggaccc gtgttcgcag tgccctgagt ctcaacggtt acccacgccg ttttatacac       180
     aataccaaga atagatcgtc ggaacccagg gatcagaagg tatacaagac attyacagtc       240
     ttgccgtaca ttgatggggt ctcccaacaa ctcaagcgcc gcctagagag ccatggcatt       300
     cgaacggttt tcagatcaga taccacccta cgtcaacaac ttacacgccc caaggatcca       360
     attcctccac acagacggga cggcattgtg tacaacatcc cttgtaaagg atgtgataga       420
     tcctacatcg gtgaaactgc ccgtccgata aaagaaagaa tcactgagca taagagggac       480
     gtcaggctcc gccgaactga caactcagcc gtagccgaac atgcttggga taaccagcat       540
     cadccagact gggacggggt tcagtgcctt tcccaagaac gacattggta cacacggagg       600
     gtaaaaraag ctatcaatat ccgtctcaat cctaataatt tcaacagaga caacgggatc       660
     gatatccccg aattttggat gcggacgata cgccgccatg acactcgccg tcctgccagc       720
     caacaacggt cgattccatt cagcagacgg cccgagccag cggncccgtt gattggttga       780
     gtaccgtatg cgtcggccaa taggcctggt gcatcagccg aaccagcggc cgaaccagcg       840
     gccttgttga ttggttgagc accgtgtgct tcgaccaata ggccttgtcc gttattgttc       900
     taattattga tcgaattatt gaccgctccg ccggtccacc cgtagagtat aaaagacgct       960
     tgcttacaat atattttatc acctgacgaa gtgttgcagc ggcacacgaa acgtcgtgat      1020
     cttttagatc ccttgttgac catacattgc gagacaaacg aatrtcacta gcgatattat      1080
     tttcgatact atatccgcaa tgagtaatat atttagcatt at                         1122
//
ID   TU1         repbase; DNA   ; SPU   ; 775 BP.
XX
AC   X00146;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus transposable element TU1 fragment.
XX
KW   TU1; transposon; Repetitive element.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-775
RA   Liebermann D., Hoffman-Liebermann B., Weinthal J., Childs G.,
RA   Maxson R., Mauron A., Cohen N.S., Kedes L.;
RT   "An unusual transposon with long terminal inverted repeats in the sea
RT   urchin Strongylocentrotus purpuratus.";
RL   Nature 306, 342-347 (1983).
XX
DR   GenBank; X00146; Positions     609    1383.
XX
SQ   Sequence 775 BP; 188 A; 231 C; 150 G; 188 A; 0 others;
     ggttccatga cacatgctcc gccgacgatt gctccgccga catttactcc gcaaaacgcg        60
     acaattgctc cgcgacattt gctccgcgac atttgctccg acgtcaaatg ctccgccgac       120
     agttgctccg ccgacagttg ctccgccgac aattgctccg ccgacaattg ctccgcctga       180
     agcgacaatt gctccgccga catttgctcc gccgacaatt gctccgccga catttgctcc       240
     gccgaagcgc acctgctccg ccgacatttg ctccgccgac aatgctccgc cgacaacgct       300
     ccgcctgaag cgacaatgct ccgccgactg ctccgcctga agcgacaatg ctccgccgac       360
     attgctccgc cgacaattgc tccgacgaca tgctccgcat gaagcgacac ttgcaccggg       420
     tgacatttgc tccgcgacat ttgctccgcc caaaaagtgt cccattaaat acaaatgcta       480
     ctagtactac gacaaatgct tcgccgacaa tatttttttt tcacgggttg tttttgtttc       540
     tttctttttt tcttcatttt ttgaatgcat ttcatgacat tatgtaaatg aaatgaaatg       600
     aatgaatgtt gataatgtgg gaggaaaagc agtttgccta aaagtcattt cgaatatact       660
     gaaataactt tccatctatc actgtacgtc ccacataata aacactaaac actcattaca       720
     tgtcatggga agtttttttt tttaaagtta gagcagctaa gccacatccc ccgtg            775
//
ID   SURF1       repbase; DNA   ; SPU   ; 333 BP.
XX
AC   X07085;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus retroposon-like DNA sequence SURF 1-1.
XX
KW   SINE2; SINE; Interspersed Repeat; Repetitive element; SURF1;
KW   retroposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-333
RA   Nisson P., Hickey J.R., Boshar F.M., Crain R.W.;
RT   "Identification of a repeated sequence in the genome of the sea urchin
RT   which is transcribed by RNA polymerase III and contains the features
RT   of a retroposon.";
RL   Nucleic Acids Res 16, 1431-1452 (1988).
XX
DR   GenBank; X07085; Positions     535     867.
XX
SQ   Sequence 333 BP; 86 A; 64 C; 70 G; 86 A; 0 others;
     cagatataag tattatatct cgcaattcgc atttcattcg catatatgga tatgggtttc        60
     gtatagtctc cgggctgtgg ttcgcggttc gagtccctcc gcgacactaa tgtcctttgg       120
     cacgacaaca aattaaatgt gttactctcc acccaggtgt attaaattac ctggtaggaa       180
     ttgtattcct tgaatacctt tacatcttag ggtagctggg ctaaagcagg gtaataatac       240
     tactttgtat aggcgccctt gggcatattc tgggatggat acgtgcgcaa tataaatgta       300
     gctagtattg ttattattat tatcattatt acc                                    333
//
ID   CSP2108     repbase; DNA   ; SPU   ; 312 BP.
XX
AC   J01193;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence.
XX
KW   Gypsy; LTR Retrotransposon; Interspersed Repeat; CSP2108;
KW   Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-312
RA   Scheller H.R., Anderson M.D., Posakony W.J., McAllister B.L.,
RA   Britten J.R., Davidson H.E.;
RT   "Repetitive sequences of the sea urchin genome: II. Subfamily
RT   structure and evolutionary conservation.";
RL   J. Mol. Biol 149, 15-39 (1981).
XX
DR   GenBank; J01193; Positions       1     312.
XX
SQ   Sequence 312 BP; 79 A; 76 C; 51 G; 79 A; 0 others;
     ctgacttggt cgacagatct ggaatgagct tcccttggta attgatcata cccaagaacc        60
     gttggacatc tttccgacat ttcggtctct caatgttcaa gatagcagac actttctttg       120
     gatcacgttg aactccttga tcactgatca agtcaccaat aaatgtgagc ttcttgacat       180
     tgaactcgca tttgtctttg ttcaacttga gatacatttt tttcacaatg ctgagaacct       240
     ctctcaacct gttatcatgc tcctgttagg tagttcccta tacaatcaca tcatccatca       300
     ttgtgttaac tc                                                           312
//
ID   DNAX-2_SP   repbase; DNA   ; SPU   ; 523 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus sequence.
XX
KW   DNAX-2_SP; nonautonomous DNA transposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-523
RA   Kapitonov V.V., Jurka J.;
RT   "DNAX-2_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 224-224 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors several thousand copies of DNAX-2_SP
CC   (including elements that are 70% identical to the consensus
CC   sequence). These elements are characterized by a palindromic
CC   structure (excluding 8-bp termini). Target site duplications
CC   change from 0 to 9 bp. Classification is unknown.
XX
SQ   Sequence 523 BP; 100 A; 150 C; 165 G; 100 A; 0 others;
     cgtatccgga cacctacccc ctggacatcc acccccggat aaccacccca gtcaactacc        60
     ccctaggaca actaccccct aggacaacta ccccctagga caaccacccc ctaggacaac       120
     tacccccggg acaactaccc ccggacaact accccctagg acaactaccc cctggacaac       180
     tacccccgga caactacccc ctaggacaac taccccccgg acaactaccc cctaggatag       240
     ttgtccgggg gtagttgtcc tagaggatgg ttgtcgtagg gggtagttgt ctgggggtag       300
     ttgtccgggg gagttgtccg gggggtagtt gtccgggggt agttgtccta gggggtagtt       360
     gtccgggggg tagttgtccg ggggttagtt gtcccagggg gtagttgtcc tagagggtgg       420
     ttgccctagg gggtagttgt cctagggggg tagttgtcct agggggtagt tgactggggt       480
     ggttatccgg ggtggatgtc cagggggtag gtgtcctaga acc                         523
//
ID   SPRP1       repbase; DNA   ; SPU   ; 190 BP.
XX
AC   J01194;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence (clone lambda-2109B-18).
XX
KW   Repetitive sequence; SPRP1.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-190
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01194; Positions       1     190.
XX
SQ   Sequence 190 BP; 44 A; 40 C; 39 G; 44 A; 0 others;
     tcgagtgtat aaactgtgtt gttatcagtg gcgtcgatcg ctcgacgttt cattaaatta        60
     ttagagaaag aagacgattc gttgtactgt tttcgactcc taatccttgt ctgaataaag       120
     tttcccccct cccgcgcgaa acgcggaagc tttggcgttt catttgatta taactcttaa       180
     tccttgtttg                                                              190
//
ID   piggyBac-N2_SP repbase; DNA   ; SPU   ; 505 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous family of piggyBac DNA transposons - a consensus
DE   sequence.
XX
KW   nonautonomous DNA transposon; piggyBac superfamily; piggyBac-N2_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-505
RA   Kapitonov V.V., Jurka J.;
RT   "piggyBac-N2_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 249-249 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors several thousand copies of piggyBac-N2_SP
CC   elements characterized by 19-bp terminal inverted repeats and
CC   the TTAA target site duplications.
XX
SQ   Sequence 505 BP; 159 A; 84 C; 85 G; 159 A; 6 others;
     aggtaataca aagttttggt atggggtcat gaatttggtt caaatgaaca tattggaagc        60
     atatgcgatc ctacaatatt cagtgatcgt tgtcgcggtt gaaatcgagt cttaagtkat       120
     gaaattgtaa ataataaact ctttatgttg tatagctccc tctcaaggtc aagttttaat       180
     taagctttaa aacaatgttt cttgactaaa atcgaccaat ttyagctatt cccgtttgga       240
     aattatatat cgcaactgca tattctgaga ttttcatggt cgcagctacc attgdatggc       300
     cktaggggcg ctatttgaaa tttatcaaaa tttaccggga gcaccggtaa atttttatat       360
     tcaatttttc tcraaagcag aagtgtttta ggggctaaat tttctagtgc ttataataca       420
     tccacagggg catccaaata tatcaaaatt gtaaagaatc actatccabc caattttcaa       480
     aatttcccaa aactttgtat tacct                                             505
//
ID   SPEC1       repbase; DNA   ; SPU   ; 472 BP.
XX
AC   J01207;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus spec1 repetitive sequence.
XX
KW   Repetitive sequence; SPEC1.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-472
RA   Carpenter D.C., Bruskin M.A., Spain M.L., Eldon D.E., Klein H.W.;
RT   "the 3' untranslated regions of two related mrnas contain an element
RT   highly repeated in the sea urchin genome.";
RL   Nucleic Acids Res 10, 7829-7842 (1982).
XX
DR   GenBank; J01207; Positions       1     472.
XX
SQ   Sequence 472 BP; 168 A; 78 C; 79 G; 168 A; 0 others;
     tataaagcac atgtatagat gcaattgtta aaacaatgat tacataacac ttgcaagaat        60
     acattcaaag ataaaattac taagatatta tgacaaaaac cctctcaatc tggacctcta       120
     ggaagatcag agccattcaa taatttaacg gtccttaata gagctattca tccgtattta       180
     ttttaaataa ttatatttgt ttatgttcat gggcatgtaa tatgtttgtt taaacggaaa       240
     atgaaaccaa accaatctag agcccggcac taacgtcctt tggcaaggca ttaattcaca       300
     tttaccactc tccacccagg tgtataaatg ggtacctagc aattgatggg gtaatgataa       360
     atgcagggcc cgcaggacag cagtattgat actgatgttc gctagcctga gtttaaaaaa       420
     atattattat cattattaat agtagtagta gtagaagtac tagtatttta tt               472
//
ID   hAT-N1_SP   repbase; DNA   ; SPU   ; 652 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous hAT DNA transposon - a consensus sequence.
XX
KW   Mariner-N1_SP; nonautonomous DNA transposon; hAT superfamily; hAT-1_SP;
KW   hAT-N1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-652
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N1_SP, a family of nonautonomous DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 247-247 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors several hundred copies of hAT-N1_SP-like
CC   elements. They are characterized by 8-bp target site
CC   duplications and 10-bp terminal inverted repeats. The
CC   hAT-N1_SP and hAT-1_SP elements share common 100-bp and 70-bp
CC   5' and 3' termini. Most likely, transpositions of hAT-N1_SP
CC   elements were catalyzed by the hAT-1_SP encoded transposase.
CC   An internal portion of hAT-N1_SP (pos. 105-525) was
CC   contributed by insertion of a Mariner_N1_SP element.
XX
SQ   Sequence 652 BP; 176 A; 127 C; 96 G; 176 A; 1 others;
     tagtgctgta gtcaaacgtt taaccgtccg gtatccgacc gcccatggcg gattccgttt        60
     tcaattggac ggtttcgttt tcccgttttt tttttttttt tttttttatt tttttttttt       120
     tttttttttt tttaagtttc gatttatgcc cctccacctg gcactatgcc tggcaatgtc       180
     tcccagctca gtaatcggtg tgttgactca ccactcggaa actagaacaa cactccaatt       240
     tgtctgtcat cttggtttga aagtaatctt tgtaatagat ctcaatatgt agtttataat       300
     aataattcat ccaattttta cacatggtgt accacaaggt tctatcctag gtcctctact       360
     gtttttaatt tacattaatg atcttacaca ttcttctaaa aacgacattg ttactattat       420
     ttgtgacaag ttcacaagca caaatcggcg ccttcaaatg cacctcgcag ttaaatgaaa       480
     gtccttcccg ctttttcaca cggacaaaaa acaaaaaaaa aaaaaaaaaa aatgattttt       540
     twtttttatt ttttttattt ttttattttt taaaaaatcg tttaaccgaa aaccgtccgg       600
     ttttgactgg cggttaaacg gaattggaga tatccgtgat gttacagcac ta               652
//
ID   CSP2096     repbase; DNA   ; SPU   ; 203 BP.
XX
AC   J01188;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus repetitive sequence csp2096.
XX
KW   CR1; Non-LTR Retrotransposon; Interspersed Repeat; CSP2096;
KW   Repetitive sequence.
XX
OS   unidentified sea urchin
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
OC   Echinoidea.
XX
RN   [1]
RP   1-203
RA   Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R.,
RA   Davidson H.E.;
RT   "repetitive sequences of the sea urchin genome: iii. nucleotide
RT   sequences of cloned repeat elements.";
RL   J. Mol. Biol 149, 41-67 (1981).
XX
DR   GenBank; J01188; Positions       1     203.
XX
SQ   Sequence 203 BP; 50 A; 43 C; 50 G; 50 A; 0 others;
     aattcgggta cgagttggat tgtaggagtg tagtgagtct ttaatgtatt gtggcgagat        60
     tccatggaga gcccgataaa caagtaacat aattttgaag tggacccttt tctggacagg       120
     tagccagtga agagagcgta atataggcgt aatagaagac attcttggcc ccccccttct       180
     ctctctctct ctctctctct ccg                                               203
//
ID   piggyBac-N1_SP repbase; DNA   ; SPU   ; 538 BP.
XX
AC   .
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   Nonautonomous family of piggyBac DNA transposons - a consensus
DE   sequence.
XX
KW   nonautonomous DNA transposon; piggyBac superfamily; piggyBac-N1_SP.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-538
RA   Kapitonov V.V., Jurka J.;
RT   "piggyBac-N1_SP, a family of nonautonomous DNA transposons in the sea
RT   urchin genome.";
RL   Repbase Reports 4(9), 248-248 (2004).
XX
CC   [1] Consensus
XX
CC   The genome harbors several thousand copies of piggyBac-N1_SP
CC   elements characterized by 190-bp terminal inverted repeats and
CC   the TTAA target site duplications.
XX
SQ   Sequence 538 BP; 173 A; 79 C; 99 G; 173 A; 0 others;
     aggggaagtc caccctgata ttaagttggt tttaataaaa gcaaaaaatg agagaaacaa        60
     attagtgaaa gtttgagcaa aatccgatta aaaataggaa agttatgaat ttttgaagtt       120
     gtcatcagtg aaacacaaat tggcaacact gtgacgtatc ttgcgagctc ctctccaatt       180
     tgctctgtac agaaattcat aaactttcat tttcttagtt attgatgacg gaatagattt       240
     gtttcataca ggggttgtat aaaaacatat ttgcaataat tatatttagg gtgaatgtat       300
     gattgaaaat tttcttaagg gaaaatatag atttttgaag ttttttagta cagggcaaat       360
     gggaggggag ctcgcaagat acgtcacaga gttgccaatt tgtgtttgat tgattgcacc       420
     ttcaaaaatt cataactttc ttatttttaa tcggtttttg ctcaaacttt cactgacctg       480
     tttctctcat ttttctgctt ctattaaaac caacttaata tcagggtgga cttcccct         538
//
ID   hAT-1_SP    repbase; DNA   ; SPU   ; 6306 BP.
XX
AC   Contig26222;
XX
DT   22-OCT-2004 (Rel. 9.09, Created)
DT   22-OCT-2004 (Rel. 9.09, Last updated, Version 1)
XX
DE   hAT-1_SP, a family of autonomous hAT DNA transposon in the sea urchin
DE   genome.
XX
KW   Autonomous DNA transposon; hAT superfamily; hAT-1_SP; hAT-N1_SP;
KW   transposase.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-6306
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-1_SP, a family of autonomous hAT DNA transposon in the sea urchin
RT   genome.";
RL   Repbase Reports 4(9), 246-246 (2004).
XX
DR   BBBCM; Contig26222; Positions     227    6532.
XX
CC   hAT-1_SP is a fossilized copy of an autonomous hAT DNA
CC   transposon. It is flanked by 10-bp terminal inverted repeats
CC   and share common 100-bp and 70-bp 5' and 3' termini,
CC   respectively, with nonautonomous hAT-N1_SP. The 595 hAT-1_SP
CC   transposase is encoded by 3 exons (CDS pos. 2100-3185,
CC   3545-3702, 3967-4507).
XX
SQ   Sequence 6306 BP; 1980 A; 1156 C; 1244 G; 1980 A; 0 others;
     tagtgctgta accaaacgtt taaccgtccg gtatccgacc gcccatggcg gattccggtt        60
     tgaatttgac ggtttcgttt acccgatttt tttttttttt tttttttttt tttttttttt       120
     tttttttaaa tttgtgtttt tattggaaaa tcaaaagaaa tcacaatatt tacaaataat       180
     ttacacattt agaaacaaaa tcacaaaaca aaaacggaga cttaactgtc gggcatgcat       240
     tggaacattg actaggtttc actttgttta tgaatctaat aaatcaagtt ttgccgacat       300
     tatagtcatc ataagtcagc cccgacttgt gatgttgaat tgtaaagcaa cacaatcaac       360
     tgagaagttg acccgtaaaa ctattaagtg cccagcctaa aaataaaaca gttcaatcaa       420
     aagcctctaa attgtaaaaa taactctggc ttcacgtgac cgcgcaacgc atcgaaagtc       480
     ccaaccatta aacgaggtca atgagacaat gaccccagct catgccccag tttttcttgc       540
     gcaatattac aacaaatttg gcgaggccgg gtgaaataca tagtctgtac tttcagtcac       600
     tgataatgcg taaccgtccc aaactccata gactccaaat cacattttaa tttttaaagt       660
     tacttacaaa ttatgtacaa ctttgcaaga taactacgaa aagcgtgatt atggtattta       720
     ttgaagaatc atattcaaga atgaatcaat aaacccaggc aaaatgttga gtttcaataa       780
     agttttgaag tttatgtttg tgtttgtcta tgatttatac ttaacttgag ttacgttcat       840
     attttgtaaa cagctacgtt actggtgtgt taatctgtca tgtggaatta tctagtgact       900
     agaaataacc cggatcagta attttattga aattgggatc taggggaagc ctttcttatt       960
     ttcatcattg atcaatttct aagtcctaat tactaaataa agggtgcatg gacggataat      1020
     acaccgccga actgttttta attcattaac ttgtcgacag acaagtcgca gacgacagta      1080
     tctcttcata gtttatttga gtgccgttgt tcttgtgttt tcactggcgg ccttttttta      1140
     gaagttcgtc ggaaaataaa cttagagaag aatacgtttc cgattagaat ctataaatca      1200
     gccgagtgtc gatttttgtt taaaaaactg ccgatgatta ttttggcggt tgtttttttc      1260
     ggacgtcatt tcgtaatttt cgttcaagag tatatatcaa ttttaatgta ttaaacaaaa      1320
     tgattaatga tgtaactgtt aactgaagtt aggagtttga gataacccag ggtatttcgc      1380
     cagctgattt tggaaggggg taatcctttt ttgtttaata atattgtaag tcaagtttac      1440
     tcctgaaaca attctttcat ttaattccga ttgtcaataa agaatctaac attcagccga      1500
     gtgtcgattt ttgtttaaaa aaactgccga ttgttttggc ggttgtttgt tttggacgtc      1560
     atttcgtcca agcgtacata ttaatttatt aaacataatg attaatgatg tagcttttaa      1620
     ctgaaattag gagtttgaga taacccagga aatttcgcca gctgattttg gaagagggta      1680
     atcctttttt gtttaataat attgttagtc aagtttactc ctgaaacaat tctttcattt      1740
     aattccgatt gtcaataaag aatctaacat tcagccgagt gtcgagtttt gttttaaaaa      1800
     atgccgatga ttgttttggc attttttttt tggacgtcat atcgtccaag cgtatatatt      1860
     aatttattaa acatattgat taatgatgta gcttttaact ggaattagga gtttgagata      1920
     acccagaaaa tttcgccggc tgattttcga agggggtaat ccttttttgt aaaataaata      1980
     ttgtttataa gtcaagttta ctcctgaaac tacctatcac tatcatcctt tcgtttgcgt      2040
     tcgtccacga cggttataat tatatctttc tcgccttcga attcgaatat tacgtcaaga      2100
     tgccaagcaa agtttggcgc gtgtttacga aagtttcgtc gactaccgtg aaatgcacta      2160
     tttgcgatcg tgtgctgggc tataagggag ggtcgaccgg agctatgtta aatcacatga      2220
     agactcatcc caactccatt gaagatgaca gacagccgag actttcatca ttcaaccgac      2280
     aatgtaaccc ggatagagca cagcgaattt ctaatctcat cgccgatatg atcgcaaagg      2340
     atggactgcc catcaacttt gttgagggcg aggggtttcg agcactcatg cacgacgtcg      2400
     aaccagactt cacaatccct agccgacaaa ctgtgatgag aattcttgaa ctaaagtttc      2460
     tagagcagaa gactaaaatt aagcactgga tgagcggatg tgaacacatc gcaataacga      2520
     ccgactgctg gacaagcttg ggccaggaag gatttatgac cgtgaccgca cacggcatcg      2580
     ataaggaatg gatcaagaga agtttcgttc tcaacaccag ccctgtggcg agcctcgacg      2640
     acaacgatga ggacaacgat cccccactcc cacagcggca tacttcccaa gcgctaaagt      2700
     cgcaactcag agaagttgct caaacctggg agataaacaa taaagtgtgt ggggttgtgc      2760
     acgacaacgc agccaacgtc agggtgattg gcgaggccgt gggagcaccg gacgttcctt      2820
     gcacagctca taccctccaa ctctgtgtga atgctggctt gaactcgaac ggccagttac      2880
     aaagagtcat tggagccgtg agtcgcttgg tagggcactt caaacactct gtggtggcat      2940
     cacaagctct aactgccaag caagaccagc ataacttgcc aaaacatcgc ctaatccaat      3000
     ctgtcaaaac gagatggaat tcggtgtacg atatgtttgc tcgagttacg gaacagcgct      3060
     gggccatcac aagcgttctg agcgatgaac gtttgacgct tcatcgtgat gcgacaaccc      3120
     tgcaactcaa ggacgagcac tggtctatcg tcgacaacat ggggaaaaca ctggaacctt      3180
     ttttggtaag tacaattgaa attattttca ttaaatatat tttaattatc ttacaatttt      3240
     ctattcaatt tcacaaataa gaaataatta gaatgcatca atcatatgca atgaaatttc      3300
     aattaaccat tctactgtaa ataaccattt ttcattaacg attttatcgt attttttaat      3360
     atgttaatta atataatata cataaatata tttgctcgta agtatgaatt tatgaacaat      3420
     ttgcaaagat gcaaacttga aaaaagaaaa actgacatta ttgcattgga tttgtaagtt      3480
     gtaagtttgt aactagtggc taggtctagc tgtaaccatt gcattgtctt ttttcactta      3540
     ataggtagca acaaaggtac tttccagcga agaacatcca acggcatcaa cagtccttcc      3600
     aatgatcacg ggactacttg acaacttcct catcgtggag gaaaccgata gcggaatagt      3660
     ccgacagttc aaggaaacaa catcagagca attgaagaga aggtaccgat tatattaaac      3720
     aaaacgcaaa tgcttcattt aattaaagaa agagaaaaaa gagacactat ctcattggaa      3780
     aaattaacaa cttattcgat ttttaatatc aattgtaaaa aaaaaaaaaa aaaaaacttg      3840
     tataaaatgt tgctatcgca aataaaatga cagcactaga cttttaaaaa aagcaacaac      3900
     aacatatata atgctgatgc tcaaatatta catttctaat tcataaattt ttcgtttcat      3960
     ccttaggttc catatcaaat ccgctcgaga gcgagacgag gatgtcgaga tagaagatgt      4020
     atcggctttg catcttgctt cagcattgga tccccgctac tcaaacctca cttatctacc      4080
     acgcgccatg agaaacgtcg taaagaacaa gctgaatgag cttatcccag aaagagatga      4140
     cgaagaacag aacgctgatg tcgagcaacc atcaacgtcg cttgatttcc ttattacggg      4200
     aaggaggttt acagctccgc aacaacagcg tgacagtgtg gaagaaattc atacattttt      4260
     tgatctgccc gtggtcccct ctactgctga cgcagttgcg tggtggaaag cgaacgaagc      4320
     gtcatttcct ctcctcggca atgtcgcaaa gaggtttcta acaataccgg caacatctgt      4380
     cccatccgag agggtgttct ccactgcggg caatatagtc accaagaaac ggagctgcct      4440
     tttggccgag aatgtgaata tgctgatatt tctcaaacat aacgcaaagt ctatccctct      4500
     gatctgagaa aggacttaaa ttgatgatgt tatttcataa actacatgct ctttattact      4560
     cttgtagtat acttctcaac gataaagatg acatcacttt gttattgtta atttgttaca      4620
     gacttattcc tcacttaccc ttttatcccc gttcgtacga tatgattcta gtttctgtta      4680
     taaataatta aaatatgtta ttttatgact tatctttcaa agtctgaata tacgctattc      4740
     atctaaaatg tttgaaattt gttgagtttt ttcatggtga tgtcattttt aggcaatgag      4800
     atatcaccga atgaacaagt taaatttttg aagtacaaac taaaatcgat tattatcaaa      4860
     ataaactatt agaatcaagg tcacaagttt tcacaacgct agtttattaa gccgacacaa      4920
     acttaactgc tgagcgcaga tctctaaatg ttctttcgta ataattatta tgctcggtat      4980
     ttgttatatt tcattttctt gccacatttg caaaaagggg gtagacaact aggcatgtta      5040
     taatttataa tccttgccta acacgtagta ttgggataat tgtatcaaaa cataatgcgc      5100
     ctgtaaatag cctgtactgt tgtgtgtcga actgtcgatt tgttttattt ctttgtcaaa      5160
     gataaatagc ccaaactctg aagtttggca ttttaatctt tgaaatgtgc gtgcttgact      5220
     agtcttgtct ccctgtcagt atatttcttg ttaccgtaat tcaatgaata ggagacgatt      5280
     gccatattta aaattgttaa ctttagagag ttagacacaa ggcttatgaa aatgatgatc      5340
     catgtactga cctccgaagt ccgaatttca aagtcaaaaa aagttatagc atcagcgagg      5400
     ggtcggggta tggtaaatgt gttttcttcg aatcacatgt caacatctcg ctgttttata      5460
     tttggaagga aaacatagga acttaggaag cacgtgaatg cccaactcat ttacatatgc      5520
     cttgtgtcag ctgctgaagt tgaattaaca agcagtgata tgattggcta gtcgatgtat      5580
     ggataatgtc cgcgcacaca atgcatggag ttttgcgagg gagatcgaga gagagagaga      5640
     gagatagtgc agtgatgatt agagcatgat tggtcatgaa taatgataag ttggtgctga      5700
     ttgtgagcga tgattggtcg cttacatgag acacgatgca gacagcgcgg gcatggtgcg      5760
     agagagagag agagagatgt gtgcatgagg gtaccgggtc ggtgacgggt cataaaaata      5820
     aacatgattc agtaatattc tttgaaaccg cgcgcggtgt ctagatattt acaaactgaa      5880
     caagaaataa caaccaagtg ataagcagta gtattcagct tagatttcag ctggatattt      5940
     aaaaaatgaa caagaaatga caaccaagtg ataagcagta gtatctggct tagatttcag      6000
     ctggatattt acaaactgaa caagaaatga caaccaagtg ataagtagta gaattcagct      6060
     gtcaggggcg gtttaatatt tacaaacaga gcagcaataa catcgcaccg caccgatgag      6120
     tgattgagtg caatgaatga cctagaaact tgatacctgg cgtgtgctgg gtgcgtgata      6180
     tactactatt cttttttaat cagcggcgac cctggcaaaa gtgaataatt ttcgtttaac      6240
     cgaaaaccgt ccggttttga ctggcggtta aacggaattg gagatatccg tgatgttaca      6300
     gcacta                                                                 6306
//
ID   CR1-5_SP    repbase; DNA   ; SPU   ; 4174 BP.
XX
AC   .
XX
DT   07-2004 (Rel. 9.11, Created)
DT   07-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   A family of CR1 non-LTR retrotransposons - a partial consensus
DE   sequence.
XX
KW   CR1 superfamily; CR1-5_SP; non-LTR retrotransposon.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-4174
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-5_SP, a family of CR1 non-LTR retrotransposons in the sea urchin
RT   genome.";
RL   Repbase Reports 4(11), 289-289 (2004).
XX
CC   [1] Consensus
XX
CC   CR1-5_SP is a family of CR1 non-LTR retrotransposons. The
CC   consensus sequence was reconstructed from 10 copies 99%
CC   identical to it. The 5' terminus of CR1-5_SP is not known. The
CC   consensus encodes the 1047-aa CR1-5_SPp protein (pos. 1-3141)
CC   that includes the CR1-like reverse transcriptase domain. The
CC   3' terminus of CR1-5_SP is composed of the (TCTA)
CC   microsatellite.
XX
SQ   Sequence 4174 BP; 1181 A; 907 C; 854 G; 1181 A; 0 others;
     cccagccagc gtgtgaacat tgaactttgt tgtgaaatta ctgtttctgc ggataaactt        60
     gccccaaata tgttggataa ttttgggatt attgtggtgc tttctgtcat cgcatcacta       120
     cctcacttca tagccgagag taggccggcg ctcttggctg gggtgacgat ggagtttcag       180
     ctggtacaga attcaattga cactgaacgc tattcagacc agtaccgcta cacaaaagat       240
     gaacttttgt cgttacgtaa cacttcccat tcacggctcc ctgacaacgt atttgcaaga       300
     ataaaagaac tgggtatcga taaacgccgt ggttgtcgcg ccggttctca caagtggaga       360
     aagattgctg tcgtcgaagg aaggaggaga agaacgccca aaccacctgg agttcgggca       420
     ccccaactca tcccaattaa aactattaca actgtgagta ctgatcgcca atcacaaggg       480
     aacttaccta ctatttacat gtgcaatcct cgttcactaa acaataaact tgatgaattt       540
     tccgttgttg ttcatgaatt gtgttgtgac gtctgtgtgg tgactgaaac gtggtttaga       600
     gcagatcaac ctgaaagtga ctttgcagtg gatgattatt tagtttttgc caaatctaga       660
     gattccagaa ggggtggtgg tgtcgcgatt tatgccaaac cagagtcgat gcccaaaaca       720
     gtgaactttc ttcccccaca tccgcaccac gaagtaattt ggttacaact tcgacctaaa       780
     cgtttaccga gagacatttc ttgtctctat gttgctgctg tgtattcccc tcctgacaat       840
     gattgcgtaa atgatttgat acagtacctc gtaaacgcta ttgatgacat caaaaccaga       900
     catggagatg ctggggttgt tatcctcggg gattttaata gagctgatac ttccgagttg       960
     accagtacat gtaacctgag acaagttgtt aggaaagcaa cacgcggtac tgcaatcttg      1020
     gatctcattt taactgacat ccatcagtgg tattctgaac ctgagatcct ctcacctctt      1080
     ggcctagggg gtgatcacaa tgcagttctc tggaaaccaa aactcaacaa aaccaacagt      1140
     aaaaacaagg cagtcaggaa atttgttcgt cctatgaaag actctgcgat tcgtgagttt      1200
     ggtcaatgga tatctcaaca tacttgggat gatgtcatgg caagctctag tgcccaagag      1260
     aagtgtgaca aattgtatgc ttcactacaa aacgcaatgg acgaatacct gcccatgaaa      1320
     tcggtgaaga tgcatccacg tgacaagccg tgggtgacgc cgtatttgaa atcactgatt      1380
     ggtcaacgtc aaaaggcttt cagcaatgac cggactgagg aatggaaacg cttaagaaat      1440
     aaagttcaga acaagaaaac tgagctgaag aaaaatttct acaaggaccg tgttttgaaa      1500
     ctaaaacgtg agaatccttc tagctggtat aaacacttga aaatcatgac ttcatcaaaa      1560
     actgcaagca acatcatcat acctgagtcg ccagaactag acgacttagc catcgctgac      1620
     tgtgtgaatg accatttcgc aaatgttagt caggatattc cggaacttga tcttcagagc      1680
     ttgccagcct acttgccaac tccgaaacct cagcttacag ttcaacccca cgaagtttac      1740
     aaggaactga atcgaataaa gccgggaaag tccagtggac ctgacggcat ccctgcgcgc      1800
     attgtcaagg agtttgctgt ggagctcgca tcacctctct gcgaagttct aaactcatca      1860
     tatcactctg ggtctgttcc atcacaatgg aaaggggcaa ttattgctcc tattcctaag      1920
     gaaaaggccg catcatccat cgacaaacaa agacccatct cattaaccga tcacttcgct      1980
     aagatagctg aggtcttcat ttatcgcaaa cttctggctg atgtacgcca tcaactggat      2040
     ccaaagcagt tcggtgcaag agctggtcgg tctaccacac attgtctggt agaaatctac      2100
     aacttcctat gcaaaagagc cgaactaccc agtaacgtaa cctctatagt gtcaacagac      2160
     tttagccgtg catttgacag ggttgatcat acaatcctga tccgcaaact catcacctta      2220
     gaagtgcatc catgggtcat tgtgtggata tgcagtttcc ttactgatag acagaatcaa      2280
     gttcgatatc atggagaact atcttctacg agatcaatga cagcgggagt cccccaggga      2340
     acgcgcctcg gaccccttct gttccttgtc ctcatcgacg atgccttgcg cgagtcagaa      2400
     gtcgagcgct ggaaatatgt tgatgacatg tcgctcgctt ctgctgagcc ttctaatcaa      2460
     cacggtcagt tcatgcagaa cgttttggtc aatttggagg agtggtgcaa tcaaaacaat      2520
     gttcgactta atcccaagaa gtgcaatatc atgagggtca cattcagcaa aacaccactt      2580
     cctgaccgcg acttcagcct gtgtaacgac gtgctacaag aggtctcagc tgtcaaactg      2640
     cttggagtaa ttcttcaacg ggaccttaag tggaacgatc acgtatctgt caccatttct      2700
     cgcgcctcat cgcgtctcta catgttaaga cgctggaaag agttccatct ccctgcggct      2760
     gaccttgtga cagtttacgt tggttttgtc agaccacttc tggaatatgc gtgtcctgtg      2820
     tggcactcca gtttgacttg tgcccaatca gcagcattag agcgcatcca gaagcgagcc      2880
     ctacgattga tttttcctgg tacctcctac aatacgtcac ttgatttggc tagaatcgtg      2940
     gatctagaga cacgtagaaa gactttgtgc attaactttg caacgaaagc atctaggtct      3000
     gaagttggta gtgactggtt caccgaaaac aatccaacaa gaaatctgag aaaaaataaa      3060
     cgttatcgtg agcctaggtg tcgtacaaat cgataccaaa acagccctat tccattcatg      3120
     acaaaattat tgaactttaa ttgaactttg tataaactct aatagaaggg gcaaacagac      3180
     tttagtatga ctgattttaa atgatatttg catgttttta attactcact ttgaaattaa      3240
     aataatgttt tttaaaacat atagtttggg attattacta ttgcctattt ccaatgcatg      3300
     aaaccttcgg gcgtagacgc ggaggagtgg tctattgtta gtgaggagga tgtctgttgt      3360
     tgttttcttt gttcatcccc tcacttcaat agataaccta ccgtgcctgc gcctgccaac      3420
     atggttatgt tttaggatct tgtttattac atcccagcct ttttaaatag atttaattca      3480
     ccttagctaa actggatcat gttttttttt actctttact aattaactgg ataaatcact      3540
     cgagcattat aatacatgta ccatatttaa agcatgacct atagtattta ttcattcaca      3600
     aaaaatgtga tttcatagaa aattgaacga ttaatgctaa acatagattt atatttttgt      3660
     aattttccac acgcaacact actattttca gagttgaaat gttctaaacc agttaattgc      3720
     catgtacagt attacgcatg tatttcttgt taagtatgta atgttttaat catgtaaaag      3780
     ttatcatttt cttatactcc ctcccccttt ctttctctcc tccgccatac ctgtcctttt      3840
     gtattcatta tttcactgtg aattgtgctg tatattgtat gcatgggtgt tgatccgttg      3900
     cgtcgtgcta ttcatcaggg gggtatatga tcttactgtt tcgtgcccca ctggtgactg      3960
     gggtggcgca gcggttcgac gccggtgcca agagttgcat tattatctat agtagtttat      4020
     tattagtaag tgcaatttta ccttgtaata attaattctg taatccattg cgcaatttag      4080
     tttttagcta cgaagcatgg aattaatgaa catttattgt ttacatgttt gatttgattt      4140
     gaataaacca tttatctatc tatctatcta tcta                                  4174
//
ID   SP2109AB    repbase; DNA   ; SPU   ; 203 BP.
XX
AC   K01648;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   S.purpuratus 2109A repeat element.
XX
KW   2109A repetitive sequence; SP2109AB; Repetitive sequence.
XX
OS   Strongylocentrotus purpuratus
OC   Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea;
OC   Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
OC   Strongylocentrotus.
XX
RN   [1]
RP   1-203
RA   Posakony W.J., Flytzanis N.C., Britten J.R., Davidson H.E.;
RT   "Interspersed sequence organization and developmental representation
RT   of cloned poly(A) RNAs from sea urchin eggs.";
RL   J. Mol. Biol 167, 361-389 (1983).
XX
DR   GenBank; K01648; Positions       1     203.
XX
SQ   Sequence 203 BP; 69 A; 28 C; 38 G; 69 A; 0 others;
     agcaaaagta gagtaatgtc caagctgagg ccgtgaattt ttctgcaaag catttaacac        60
     tgatttaagg cccctctggt ccttatgtat tgattaacta catgtatatt tattcatttg       120
     agtagaaaaa aaactgtaaa ataacatgca taagtgatgg acgtctgaat atttaaacat       180
     tttgtaaata gtgctagttt gtg                                               203
//
