ID   EFG_GG      repbase; DNA   ; VRT   ; 1245 BP.
XX
AC   X08030;
XX
DT   22-1995 (Rel. 2, Created)
DT   26-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Chicken EGF-like repeat.
XX
KW   EGF-like repeat; GGEFG; EFG_GG.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae;
OC   Gallus.
XX
RN   [1]
RP   1-1245
RA   Chiquet-Ehrismann R.;
RT   "Direct Submission.";
RL   Direct submission to Repbase Update (1988)Chiquet-Ehrismann R.,
RL   Friedrich Miescher Institut, PO Box 2543, CH-4002 Basel, Switzerland..
XX
RN   [2]
RP   1-1245
RA   Pearson A.C., Pearson D., Shibahara S., Hofsteenge J.,
RA   Chiquet-Ehrismann R.;
RT   "Tenascin: cDNA cloning and induction by TGF-B.";
RL   EMBO J 7, 2977-2982 (1988).
XX
DR   GenBank; X08030; Positions     255    1499.
XX
CC   This is a protein.
XX
SQ   Sequence 1245 BP; 223 A; 334 C; 475 G; 223 A; 0 others;
     tgcgtgtgcg agccaggccg gaaaggcccc aactgctccg aaccggcctg cccacgcaac        60
     tgcctcaacc gcggcctctg cgtgcggggc aaatgcatct gcgaggaggg ctttaccggc       120
     gaggactgca gccaggctgc ctgcccgtct gactgcaacg accaaggcaa gtgtgtggat       180
     ggggtgtgcg tctgcttcga gggctacacg ggcccggact gcggcgagga gctctgcccc       240
     cacgggtgtg gcattcacgg gcgctgtgtg ggtggacgct gtgtgtgcca cgagggcttc       300
     actggcgagg actgcaatga gcccctgtgc cccaacaact gtcacaaccg cgggcgctgt       360
     gtggacaacg agtgcgtctg cgatgagggc tacacgggag aggactgcgg cgagctgatt       420
     tgccccaatg actgctttga ccgtgggcgc tgtatcaacg ggacctgctt ctgcgaggag       480
     ggctacactg gagaggactg cggcgagctg acctgcccca acaactgcaa cggcaacggg       540
     cgctgcgaga acgggctgtg tgtgtgccat gagggcttcg tgggggatga ctgcagccag       600
     aagaggtgcc cgaaggactg caataaccgc gggcactgcg tggatgggcg ctgtgtgtgc       660
     catgaggggt acctggggga ggactgtggg gagctgcggt gccccaacga ctgccacaac       720
     cgcgggcgct gcatcaatgg gcagtgtgtg tgtgatgagg gattcattgg ggaggactgt       780
     ggagagctgc ggtgccccaa cgactgccac aaccgcgggc gctgcgtcaa tgggcagtgc       840
     gagtgccacg agggattcat cggggaggac tgcggggagc tgcggtgtcc caacgactgc       900
     aacagccatg ggcgctgtgt caatgggcag tgcgtgtgtg atgaggggta cacaggggag       960
     gactgcgggg agttgcggtg ccccaacgac tgccacaacc gcgggcgctg cgtggaggga      1020
     cgctgtgtgt gtgacaacgg cttcatgggg gaggactgcg gggagctgtc ctgtcccaat      1080
     gactgccacc agcacgggcg ctgcgtcgat gggcgctgcg tgtgccacga gggcttcact      1140
     ggggaagact gccgggaacg gtcctgcccc aatgactgca acaacgtggg ccgctgtgtc      1200
     gagggacggt gtgtctgtga ggaaggttac atggggatcg actgt                      1245
//
ID   CR1POL      repbase; DNA   ; VRT   ; 2232 BP.
XX
AC   L22152;
XX
DT   10-APR-1997 (Rel. 3, Created)
DT   10-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Gallus gallus reverse transcriptase gene, 3' end.
XX
KW   LINE; POL-like gene; CR1; CR1POL.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae;
OC   Gallus.
XX
RN   [1]
RP   1-2232
RA   Burch B.J., Davis L.D., Haas B.N.;
RT   "Chicken repeat 1 elements contain a pol-like open reading frame and
RT   belong to the non-long terminal repeat class of retrotransposons.";
RL   Proc. Natl. Acad. Sci. U.S.A 90, 8199-8203 (1993).
XX
DR   GenBank; L22152; Positions       1    2232.
XX
CC   3' part of LINE element, pol-like region.
CC   Parts of CR1POL are also listed as CR1_GG and CAM1_GG.
CC   1326-1713 CR1POL is similar to 1-379 CAM1_GG (73%);
CC   1714-2230 CR1POL is similar to 1-501 CR1_GG (73%).
XX
SQ   Sequence 2232 BP; 575 A; 484 C; 710 G; 575 A; 0 others;
     tcgagggatg tgggcctggc aaatggtggg gtcaggaccc tgaactttgg aagagagaac        60
     tttaagctgt tcaatggatc gttagccatg atcccctgga atgctgtcat taaagataaa       120
     gatgttgagg agagctggct actcttcaag gatgccctcc tgaaagcaca agaggtctcc       180
     atccctctga ataggaaagt gggcagacga gataggaaac cagcatggct cggcaaggac       240
     ctgctgggca cactgagggt gaagaaaggt gcgtacaagc tctggaaaca agggcgtgtc       300
     acctgggaag agtacaggga tgctgtccgg acttgcagac gtaggatcag gaaagccaag       360
     gcgcaggtag aactgaactt agcgagggat gtgaaaaaca ataagaagac attctacagg       420
     tacattggcc agaaaagaca gaccaaaaca ggtgtacctt ctttagtaaa cttaaaagga       480
     gaactggctt caacggatga agagaaagcg gaggtactga atgagttctt tgcctcagtc       540
     ttcactggag gccaggattc cagtctttct cacgtccctg agccctgcac ccccaagcct       600
     ccaggtgggg accagggggg taaatccccc cccacactaa gggcagagca agtccgagac       660
     cgcctcatga gactggatga gtacaagtct tcagggccgg atggtgtgca tcccagggtt       720
     ctgaaggagc tggctgaggt ggttgctgag ccactctcca tcatatttga gaagtcatgg       780
     ctgtcaggcg aggtcccaga tgactggagg aagggttacg tcactcccat ttacaagaaa       840
     gggagcaagg aggacccagg gaactacagg ccggtgagtc tcacctctgt gcctgggaag       900
     atcatggaac agatcctcct ggatgacatg ctcgatcaca tgaggaatga gcgtgtgatc       960
     cgagacagcc agcacggctt caccagggga aggtcatgct taaccaatct tgtggccttc      1020
     tatgatggag tgacggcgtt ggtggatgag gggaaggcga ccgatgtcat ttacctggac      1080
     ttgaccaagg cctttgacat ggtcccccac cacatcctta tctccaaatt ggagggatgt      1140
     ggatttgatg ggtggaccac tcattggata agaaattggt tgaaaggccg cagacagagg      1200
     gtggtgacca atggctctat gtccaggtgg aggccggtaa tgagcggagt cccccagggg      1260
     tctgtcttgg gaccggtgct ctttaacatc tttatcaatg acattgacga tggaatcgag      1320
     tgcaccctca gcaaatttgc tgacgacacc aaactgagtg gtgcggttga cacggaggaa      1380
     ggaagggatg ccattcagag ggaccttgac agacttgaaa ggtgggcccg ggtgaaccta      1440
     atgaggttca acacggcaaa gtgcagggtt ttgcacttgg gctggaggaa ccccaggcat      1500
     ctatacagac tggaaggagc agtccttgag agcagctctg cagagaagga cctgggggtc      1560
     ctgatggatg acaaacttaa catgagccag cagtgtgctc ttgcagctca gaaagcaaat      1620
     ggtatcctgg gctccatcat gagaggggtg gccagcaggg acagggaggt gattgtccct      1680
     ctctactctg ctcttgtgag gccccatctg gagtactgtg tccaggtatg gaggccccag      1740
     tacaagaaag acagagagct gttggagagg gtccagagga gggccacaaa gatgatcagg      1800
     gggctggagc acctccccta cgaggacagg ctgagggagc tgggcttatt cagcctggag      1860
     aagagaaggc tgcgcggtga cctcattgca gcctttcagt acctgaaggg agcctataaa      1920
     caggaaggga gtaaactctt tgaaagggta gataacagca ggacaagggg gaacggtttt      1980
     aagttgaaag agggaagatt taggttggat gttaggggga agttctttac caggagagtg      2040
     gtgaggtgct ggaacaggct gcccagagag gttgtggatg ctctgtccct ggaggtgttc      2100
     aaggccaggt tggatggggc cctgggcaac ctggtctagt aaatggggat gttggtggcc      2160
     ctgcccagca ggggggttgg agattcgtga tcctcgaggt cccttccaac ccaggccatt      2220
     ctgtgattct gt                                                          2232
//
ID   TOL2_OL     repbase; DNA   ; VRT   ; 4681 BP.
XX
AC   D84375;
XX
DT   21-APR-1997 (Rel. 3, Created)
DT   21-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   DNA transposon Tol2.
XX
KW   DNA transposon; Tol2; TOL2_OL.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-4681
RA   Hori H.;
RT   "Direct Submission.";
RL   Direct submission to DDBJ/EMBL/GenBank (1996). Hiroshi Hori, Nagoya
RL   University, Division of Biological Science; Furo-cho, Chikusa-ku,
RL   Nagoya, Aichi 464-01, Japan (E-mail:hori@bio.nagoya-u.ac.jp,
RL   Tel:052-789-2504, Fax:052-789-2974).
XX
RN   [2]
RP   1-4681
RA   Koga A., Suzuki M., Inagaki H., Bessho Y., Hori H.;
RT   "Transposable element in fish.";
RL   Nature 383(6595), 30-30 (1996).
XX
DR   GenBank; D84375; Positions       1    4681.
XX
CC   repeat_unit 1..19
CC   /note="5' terminal inverted repeat"
CC   repeat_unit 4665..4681
CC   /note="3' terminal inverted repeat"
CC   CDS 320..673
CC   /note="ORF1"
CC   repeat_unit 1433..1734
CC   /note="internal inverted repeat"
CC   repeat_unit 1785..2087
CC   /note="internal inverted repeat"
CC   CDS 2167..3225
CC   /note="ORF2"
CC   CDS 3323..3631
CC   /note="ORF3"
CC   CDS 4013..4369
CC   /note="ORF4".
XX
SQ   Sequence 4681 BP; 1401 A; 880 C; 874 G; 1401 A; 0 others;
     cagaggtgta aagtacttga gtaattttac ttgattactg tacttaagta ttatttttgg        60
     ggatttttac tttacttgag tacaattaaa aatcaatact tttactttta cttaattaca       120
     tttttttaga aaaaaaagta ctttttactc cttacaattt tatttacagt caaaaagtac       180
     ttattttttg gagatcactt cattctattt tcccttgcta ttaccaaacc aattgaattg       240
     cgctgatgcc cagtttaatt taaatgttat ttattctgcc tatgaaaatc gttttcacat       300
     tatatgaaat tggtcagaca tgttcattgg tcctttggaa gtgacgtcat gtcacatcta       360
     ttaccacaat gcacagcacc ttgacctgga aattagggaa attataacag tcaatcagtg       420
     gaagaaaatg gaggaagtat gtgattcatc agcagctgcg agcagcacag tccaaaatca       480
     gccacaggat caagagcacc cgtggccgta tcttcgcgaa ttcttttctt taagtggtgt       540
     aaataaagat tcattcaaga tgaaatgtgt cctctgtctc ccgcttaata aagaaatatc       600
     ggccttcaaa agttcgccat caaacctaag gaagcatatt gaggtaagta cattaagtat       660
     tttgttttac tgatagtttt tttttttttt tttttttttt tttttgggtg tgcatgtttt       720
     gacgttgatg gcgcgccttt tatatgtgta gtaggcctat tttcactaat gcatgcgatt       780
     gacaatataa ggctcacgta ataaaatgct aaaatgcatt tgtaattggt aacgttaggt       840
     ccacgggaaa tttggcgcct attgcagctt tgaataatca ttatcattcc gtgctctcat       900
     tgtgtttgaa ttcatgcaaa acacaagaaa accaagcgag aaattttttt ccaaacatgt       960
     tgtattgtca aaacggtaac actttacaat gaggttgatt agttcatgta ttaactaaca      1020
     ttaaataacc atgagcaata catttgttac tgtatctgtt aatctttgtt aacgttagtt      1080
     aatagaaata cagatgttca ttgtttgttc atgttagttc acagtgcatt aactaatgtt      1140
     aacaagatat aagtattagt aaatgttgaa attaacatgt atacgtgcag ttcattatta      1200
     gttcatgtta actaatgtag ttaactaacg aaccttattg taaaagtgtt accatcaaaa      1260
     ctaatgtaat gaaatcaatt caccctgtca tgtcagcctt acagtcctgt gtttttgtca      1320
     atataatcag aaataaaatt aatgtttgat tgtcactaaa tgctactgta tttctaaaat      1380
     caacaagtat ttaacattat aaagtgtgca attggctgca aatgtcagtt ttattaaagg      1440
     gttagttcac ccaaaaatga aaataatgtc attaatgact cgccctcatg tcgttccaag      1500
     cccgtaagac ctccgttcat cttcagaaca cagtttaaga tattttagat ttagtccgag      1560
     agctttctgt gcctccattg agaatgtatg tacggtatac tgtccatgtc cagaaaggta      1620
     ataaaaacat caaagtagtc catgtgacat cagtgggtta gttagaattt tttgaagcat      1680
     cgaatacatt ttggtccaaa aataacaaaa cctacgactt tattcggcat tgtattctct      1740
     tccgggtctg ttgtcaatcc gcgttcacga cttcgcagtg acgctacaat gctgaataaa      1800
     gtcgtaggtt ttgttatttt tggaccaaaa tgtattttcg atgcttcaaa taattctacc      1860
     taacccactg atgtcacatg gactactttg atgtttttat tacctttctg gacatggaca      1920
     gtataccgta catacatttt cagtggaggg acagaaagct ctcggactaa atctaaaata      1980
     tcttaaactg tgttccgaag atgaacggag gtgttacggg cttggaacga catgagggtg      2040
     agtcattaat gacatctttt catttttggg tgaactaacc ctttaatgct gtaatcagag      2100
     agtgtatgtg taattgttac atttattgca tacaatataa atatttattt gttgttttta      2160
     cagagaatgc acccaaatta cctcaaaaac tactctaaat tgacagcaca gaagagaaag      2220
     atcgggacct ccacccatgc ttccagcagt aagcaactga aagttgactc agttttccca      2280
     gtcaaacatg tgtctccagt cactgtgaac aaagctatat taaggtacat cattcaagga      2340
     cttcatcctt tcagcactgt tgatctgcca tcatttaaag agctgattag tacactgcag      2400
     cctggcattt ctgtcattac aaggcctact ttacgctcca agatagctga agctgctctg      2460
     atcatgaaac agaaagtgac tgctgccatg agtgaagttg aatggattgc aaccacaacg      2520
     gattgttgga ctgcacgtag aaagtcattc attggtgtaa ctgctcactg gatcaaccct      2580
     ggaagtcttg aaagacattc cgctgcactt gcctgcaaaa gattaatggg ctctcatact      2640
     tttgaggtac tggccagtgc catgaatgat atccactcag agtatgaaat acgtgacaag      2700
     gttgtttgca caaccacaga cagtggttcc aactttatga aggctttcag agtttttggt      2760
     gtggaaaaca atgatatcga gactgaggca agaaggtgtg aaagtgatga cactgattct      2820
     gaaggctgtg gtgagggaag tgatggtgtg gaattccaag atgcctcacg agtcctggac      2880
     caagacgatg gcttcgaatt ccagctacca aaacatcaaa agtgtgcctg tcacttactt      2940
     aacctagtct caagcgttga tgcccaaaaa gctctctcaa atgaacacta caagaaactc      3000
     tacagatctg tctttggcaa atgccaagct ttatggaata aaagcagccg atcggctcta      3060
     gcagctgaag ctgttgaatc agaaagccgg cttcagcttt taaggccaaa ccaaacgcgg      3120
     tggaattcaa cttttatggc tgttgacaga attcttcaaa tttgcaaaga agcaggagaa      3180
     ggcgcacttc ggaatatatg cacctctctt gaggttccaa tgtaagtgtt tttcccctct      3240
     atcgatgtaa acaaatgtgg gttgtttttg tttaatactc tttgattatg ctgatttctc      3300
     ctgtaggttt aatccagcag aaatgctgtt cttgacagag tgggccaaca caatgcgtcc      3360
     agttgcaaaa gtactcgaca tcttgcaagc ggaaacgaat acacagctgg ggtggctgct      3420
     gcctagtgtc catcagttaa gcttgaaact tcagcgactc caccattctc tcaggtactg      3480
     tgacccactt gtggatgccc tacaacaagg aatccaaaca cgattcaagc atatgtttga      3540
     agatcctgag atcatagcag ctgccatcct tctccctaaa tttcggacct cttggacaaa      3600
     tgatgaaacc atcataaaac gaggtaaatg aatgcaagca acatacactt gacgaattct      3660
     aatctgggca acctttgagc cataccaaaa ttattctttt atttatttat ttttgcactt      3720
     tttaggaatg ttatatccca tctttggctg tgatctcaat atgaatattg atgtaaagta      3780
     ttcttgcagc aggttgtagt tatccctcag tgtttcttga aaccaaactc atatgtatca      3840
     tatgtggttt ggaaatgcag ttagatttta tgctaaaata agggatttgc atgattttag      3900
     atgtagatga ctgcacgtaa atgtagttaa tgacaaaatc cataaaattt gttcccagtc      3960
     agaagcccct caaccaaact tttctttgtg tctgctcact gtgcttgtag gcatggacta      4020
     catcagagtg catctggagc ctttggacca caagaaggaa ttggccaaca gttcatctga      4080
     tgatgaagat tttttcgctt ctttgaaacc gacaacacat gaagccagca aagagttgga      4140
     tggatatctg gcctgtgttt cagacaccag ggagtctctg ctcacgtttc ctgctatttg      4200
     cagcctctct atcaagacta atacacctct tcccgcatcg gctgcctgtg agaggctttt      4260
     cagcactgca ggattgcttt tcagccccaa aagagctagg cttgacacta acaattttga      4320
     gaatcagctt ctactgaagt taaatctgag gttttacaac tttgagtagc gtgtactggc      4380
     attagattgt ctgtcttata gtttgataat taaatacaaa cagttctaaa gcaggataaa      4440
     accttgtatg catttcattt aatgtttttt gagattaaaa gcttaaacaa gaatctctag      4500
     ttttctttct tgcttttact tttacttcct taatactcaa gtacaatttt aatggagtac      4560
     ttttttactt ttactcaagt aagattctag ccagatactt ttacttttaa ttgagtaaaa      4620
     ttttccctaa gtacttgtac tttcacttga gtaaaatttt tgagtacttt ttacacctct      4680
     g                                                                      4681
//
ID   REM1_XL     repbase; DNA   ; VRT   ; 125 BP.
XX
AC   X00678;
XX
DT   10-APR-1997 (Rel. 3, Created)
DT   10-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Xenopus laevis REM 1 sequence (repetitive Eco RI Monomers).
XX
KW   Repetitive sequence; Inverted repeat; XLECORI; REM1_XL.
XX
OS   Xenopus laevis
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Xenopus; Xenopus.
XX
RN   [1]
RP   1-125
RA   Hummel S., Meyerhof W., Korge E., Knoechel W.;
RT   "Characterization of highly and moderately repetitive 500 bp Eco RI
RT   fragments from Xenopus laevis DNA.";
RL   Nucleic Acids Res 12, 4921-4938 (1984).
XX
DR   GenBank; X00678; Positions       1     125.
XX
SQ   Sequence 125 BP; 38 A; 26 C; 20 G; 38 A; 0 others;
     gaattctgca ctgaaatcca tttctcaaaa gagcaaacag atttttttat attcaatttt        60
     gaaatctgac atggggctag acatattgtc aatttcccag ctgccccaag tcatgtaact       120
     tgtgc                                                                   125
//
ID   PSLINE      repbase; DNA   ; VRT   ; 388 BP.
XX
AC   D82939;
XX
DT   10-APR-1997 (Rel. 3, Created)
DT   10-APR-1997 (Rel. 3, Last updated, Version 1)
XX
DE   Platemys spixii CR1-like LINE, partial sequence.
XX
KW   retrotransposon; CR1-like LINE; PSLINE.
XX
OS   Platemys spixii
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Testudines; Pleurodira; Chelidae; Platemys.
XX
RN   [1]
RP   1-388
RA   Okada N.;
RT   "Direct Submission.";
RL   Direct submission to DDBJ/EMBL/GenBank (1996). Norihiro Okada, Tokyou
RL   Institute of Technology, Faculty of Bioscience and Biotechnology; 4259
RL   Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 227, Japan
RL   (E-mail:nokada@bio.titech.ac.jp, Tel:81-45-923-1136,
RL   Fax:81-45-923-1136).
XX
RN   [2]
RP   1-388
RA   Ohshima K., Hamada M., Terai Y., Okada N.;
RT   "The 3' ends of tRNA-derived short interspersed repetitive elements
RT   are derived from the 3' ends of long interspersed repetitive
RT   elements.";
RL   Mol. Cell. Biol 16(7), 3756-3764 (1996).
XX
DR   GenBank; D82939; Positions       1     388.
XX
CC   3' end of LINE, CR1 like.
CC   291-351 portion of PSLINE is similar to GRTE9 (116-179).
XX
SQ   Sequence 388 BP; 101 A; 68 C; 119 G; 101 A; 0 others;
     ctgcagaaga gaaaaatgag gggggatttg atagcagcct ttaactaccc aaaagggggt        60
     tccagggagg atggagctaa gctgttttca gaggtggcag atgacagaac aaggaacaat       120
     ggtctcaagt tgcagtgggc gaggtctagg ttggacatta ggaaaaagtt tttcactagg       180
     agggtggtga agcattggaa taggttacct agggaggtgg tggcatctct accttagagg       240
     ttattaagct gcggcttgac aaaaccctcg ctgggatgat ttagctaggg ttggtcctgc       300
     tttgagcagg gggttggact agatgacctt ctgaggtccc ttccaattct aatattctat       360
     gattctctga catggcatgc cacatccg                                          388
//
ID   SINE_HE1    repbase; DNA   ; VRT   ; 364 BP.
XX
AC   .
XX
DT   29-OCT-2001 (Rel. 4, Created)
DT   29-OCT-2001 (Rel. 4, Last updated, Version 1)
XX
DE   Heterodontus japonicus HE1 SINE - a consensus.
XX
KW   SINE_HE1.
XX
OS   Heterodontus japonicus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
OC   Elasmobranchii; Galeomorphii; Heterodontoidea; Heterodontiformes;
OC   Heterodontidae; Heterodontus.
XX
RN   [1]
RP   1-364
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of SINEs
RT   and LINEs in elasmobranchs.";
RL   Mol. Biol. Evol 16(9), 1238-1250 (1999).
XX
CC   [1] Consensus
XX
SQ   Sequence 364 BP; 83 A; 70 C; 112 G; 83 A; 6 others;
     gagggcggca cagtggcgca gtggttagca ccgcagcctc acagctccag cgacccgggt        60
     tcaattctgg gtactgcctg tgtggagttt gcaagttctc cctgtgtctg cgtgggtttc       120
     ctccgggtgc tccggtttcc tcccacawgc caaaagactt gcaggttgat aggtaaattg       180
     gccattataa nattgycact agtataggta ggtggtaggg aaatataggg acaggtgggg       240
     aatgtggtag saatatggga ttagtgtagg attagtataa atgggtggtt gatggtcggc       300
     acagactcgg tgggccgaag ggcctgnttc agtgctgtat ctctaaacta aactaaacta       360
     awat                                                                    364
//
ID   TOL-TYR     repbase; DNA   ; VRT   ; 1855 BP.
XX
AC   D42062;
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   DNA transposon Tol-tyr.
XX
KW   DNA transposon Tol-tyr; TOL-TYR.
XX
OS   Oryzias latipes
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha;
OC   Beloniformes; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-1855
RA   Hori H.;
RT   "TOL-TYR.";
RL   Unpublished (1996).
XX
RN   [2]
RP   1-1855
RA   Hori H.;
RT   "Direct Submission.";
RL   Direct submission to DDBJ/EMBL/GenBank (1994). Hiroshi Hori, Nagoya
RL   University, Division of Biological Science; Furo-cho, Chikusa-ku,
RL   Nagoya, Aichi 464-01, Japan (E-mail:hori@bio.nagoya-u.ac.jp,
RL   Tel:052-789-2504, Fax:052-789-2974).
XX
DR   GenBank; D42062; Positions       1    1855.
XX
SQ   Sequence 1855 BP; 534 A; 315 C; 432 G; 534 A; 0 others;
     cagtagcggt tctaggcacg ggccgtccgg gcggtggcct ggggcggaaa actgaagggg        60
     ggcggcaccg gcggctcagc cctttgtaat atattaatat gcaccactat tggtttactt       120
     atgtcacagt ttgtaagttt gtaacagcct gaacctggcc gcgccgccgc cctcgccccg       180
     cagctgcgct ctcctgtctt tgagaagtag acacaaatgt gtgtgaagaa ggagaaggga       240
     gggggcgcgg ggtgagcacg gagcgtcgcc gcgtttgcgc atgcgcaaaa cctggctggc       300
     tcatctttca ggggaggcga cggtcgcggg cttgatgaaa aaaataaaag taaaaactgc       360
     gactgcgccg tcatgtagcg aatcagcgcc cctggctgta gctgcacgcg ctcctgctgg       420
     aaatgtgtga agaggggggg gggggggggg gctgcgggga atcagttcaa ttgtgggacg       480
     cttccaaatt aagtggctag gtggggacaa gggcgggggt ttgaatctac ttcataaaac       540
     ctttttatat tataagtcag tcataaggtg acattctata acctacattt taataaaggt       600
     ataaaaaata tattctgctt tttttgggtt aattttgtgt gaaatgtcca aataaaaaaa       660
     atggcaacac aaaacaatgc tgtcactaag gtgacagttg gttcagtcga cggacttgat       720
     gccttcttcg tgacgtgagg acatttatgc caaacaaacg ccaataaaca tctaaaatat       780
     ggaaaagaaa aggtcaaagc catctggtgc ccaatttaga aagaaaagaa aagaagaaga       840
     ggagaaaaga gataaagaaa agggtaagtc ctcacagctt gatgcatgtt ttttctaaat       900
     tctaatgcta cctgccctac aacaacgttg ccgatgaaaa ctttattttg gtcgatgacc       960
     aacactgaat taggcccaaa tgttgcaaat agcgtcattt tttttttttt ttttagattt      1020
     tattcttaaa aatttgctct gccttaactt gtaacattag ttatgattca tgtgtctgtc      1080
     tgctctgctg taacacaaag gttttgttgg gttttgctgt tgtatactag ctcataatgt      1140
     taaaaaagct gtgatggtta cacagcatgc tggtgctgcc ataagatgct aatggggcaa      1200
     ataatttgag attggtcatt aatttaataa tcatttgtgg cagcctaaac gttttcacaa      1260
     tgtttttttg acatttaact ggggatttag gggttaattt tgagcctgca tatgaagttt      1320
     attttttatt tgttttacaa atgtgggatt atatttttag ccaatagaat ttccataaat      1380
     ctgtaggtag ttttaaaaat gaatatttac catttactgc aactctatgg ggacaaaaca      1440
     taatgtaaca ggtcataact aaaaatgtgc caatcaaagg attgaagacg gaaaacatga      1500
     gttaattttt cttctctgaa gtagagatcg atatagaaca tgacaattta aatttccaat      1560
     tcataaatgt ttttaaaata tttattttat attatttatt taacattgag tttgattcaa      1620
     tattttctta gctaactgta tttttgccat gcttatggtc ttttattttt tgtgttctga      1680
     taacttttat aatgcttttc agaattttga catcttttgt atccacttct taatttcaat      1740
     gacaataaaa catttcagtt gacgaagaca aacaaagttc tgttgtgact atgggggggg      1800
     ggggcgcctg gggatggtct cgcccgggga gtaattcagg gtagaaccgc cactg           1855
//
ID   LFFP2       repbase; DNA   ; VRT   ; 298 BP.
XX
AC   X56096;
XX
DT   22-1995 (Rel. 2, Created)
DT   22-1995 (Rel. 2, Last updated, Version 1)
XX
DE   Lesser black-backed gull (L. fuscus) female specific DNA repeat
DE   P2000-17.
XX
KW   Female-specific repeat sequence; LFFP2.
XX
OS   Larus fuscus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Charadriiformes; Laridae; Larus.
XX
RN   [1]
RP   1-298
RA   Griffiths R., Holland W.P.;
RT   "A novel avian W chromosome DNA repeat sequence in the lesser
RT   black-backed gull (Larus fuscus).";
RL   Chromosoma 99, 243-250 (1990).
XX
DR   GenBank; X56096; Positions       1     298.
XX
CC   This is a protein.
XX
SQ   Sequence 298 BP; 84 A; 90 C; 61 G; 84 A; 0 others;
     gatcaaagca tagataaagt cgaacctgac tcaactccac agactagtct ggttccactg        60
     ccactatctg aaacccccga caatgacacc ttattgagcg gacttaagaa tctgcccctt       120
     gatgatgagc tttgggataa tgcactgtca cgatacactg caagcactga gacattagaa       180
     aacatgaggg atttaaatac acctgccctc ctctccccag cgccagtgtg tgcagtatgc       240
     gctgaaggct cgcccgctgc ggcgctacat ccccaagaac ccctaccagt accagatc         298
//
ID   TC1L_SS     repbase; DNA   ; VRT   ; 1555 BP.
XX
AC   L12206;
XX
DT   20-JUL-1999 (Rel. 3, Created)
DT   20-JUL-1999 (Rel. 3, Last updated, Version 1)
XX
DE   Tc1-like DNA transposon (inactive).
XX
KW   transposase; transposon; Pseudogene; TC1L_SS.
XX
OS   Salmo salar
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Salmo.
XX
RN   [1]
RP   1-1555
RA   Radice R.A., Bugaj B., Fitch H.D., Emmons W.S.;
RT   "Ancient origin of the Tc1 transposon family.";
RL   Unpublished (1993).
XX
DR   GenBank; L12206; Positions    1545    3099.
XX
CC   Similar to SSNHEI, and distantly to TC1_XL, TZF28 and TXZ19.
XX
SQ   Sequence 1555 BP; 523 A; 297 C; 334 G; 523 A; 0 others;
     aactatagtt tttggcaagt cggtttggac atctactttg tgcatgacac aagtaatttt        60
     tttcaacaat tgtttacaga cagattattt cacttacaat tcactgtatc acaattccag       120
     tgggtcagaa gtttacatgt actaagttga atgtgcattt aaacagcttg gacaattcca       180
     gaaaatgatg tcatggcttt agaagcctct gataggctaa ttgacataat ttgagtcaat       240
     tggaggtgta cctgtggatg tatgtcaagg cctaccttca aactcagtgc ctctttgatt       300
     gacatcatgg gaaaatcaaa agaaatcagc caagacctca gaaaaaaaat tgtagacctc       360
     cacaagtttg gttcatcctt gggagcaaat tccaaacacc tgaaagtacc acgttcatct       420
     gtacaaacaa tagtacgcaa gtataaacac catgggacct cgcagccatc ataccgctca       480
     ggaagacgcg ttctgtctcc tagagatgaa cgtagtttgg tgtgaaaagt gcaaatcaat       540
     cccagaacaa cagcaaagga tcttgtgaag attctggagg aaacaggtac aaaagtatct       600
     ttatccacag taaaaaggtc ctatatcgac ataacctgag aggccgctca gcaaggaaga       660
     agctactgct ccaaaaccca cataaaaaag ccagactacg gtttgcaact gcacatgggg       720
     acaaagattg tactttttgg agaaatgtcc tctggtctga tgaaacaaaa atagaactgt       780
     ttggccataa tgaccattgt tatgtttgga ggaaaaaggg ggagacttgc aagccgaaga       840
     acaccatcct aaacatgaag cacgggggtg gcagcatcct gttgtggggg tgctttgctg       900
     caggagggac tggtgcactt cacaaaatag atggcatcat gaggaagaaa aatgatgtgg       960
     atatattgaa gcaacatctc aagacatcag tcaggaagtt aaagcttggt cgcaaatggg      1020
     tcttccaaat ggacaatgac cccaagtata cttccaaaga tgtggcaaaa tggcttaagg      1080
     acaacaaagt caaggtattg gagtggccat cacaaagccc tgacctcaat cctatagaac      1140
     atttgtgggc agaactgaaa aagcgtgtgc gagccaggag gcctacaaac ctgattcagt      1200
     tacaccagct ctgtcaggag gaatgggcca aaattcaccc aacttattgt gggaagcttg      1260
     tggaaggcta cctgaaacgt ttgacccaag ttaaacaatt taaaggcaat tctaccaatt      1320
     actagttgag tgtatgtaaa cttcttaccc accgggaatg tgatgaaaga aataaaagct      1380
     gaaataaata attctctcta ctattattct gacatttcac attcttaaaa taaagtggtg      1440
     atcctaactg acctaaaaca gggaattttt actaggatta aatgtcagga attgtgaaaa      1500
     actgagttta aatgtatttg gctaaggtgt atgtaaactt ccactttcaa atgta           1555
//
ID   CR1_GG      repbase; DNA   ; VRT   ; 555 BP.
XX
AC   M17963;
XX
DT   22-1995 (Rel. 2, Created)
DT   26-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Chicken CR1 repetitive sequence.
XX
KW   CR1 repetitive sequence; GGCR1; CR1_GG.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae;
OC   Gallus.
XX
RN   [1]
RP   1-555
RA   Scott J.M., Tsai J.M., O'Malley W.B.;
RT   "Deoxyribonuclease I sensitivity of the ovomucoid-ovoinhibitor gene
RT   complex in oviduct nuclei and relative location of CR1 repetitive
RT   sequences.";
RL   Biochemistry 26, 6831-6840 (1987).
XX
DR   GenBank; M17963; Positions       1     555.
XX
SQ   Sequence 555 BP; 139 A; 114 C; 179 G; 139 A; 0 others;
     tattgcatcc aggcctgggg cccagcatga gaaagatgtg gaactgttgg agtgggtcca        60
     taggaggcca tgaagacaat cacagggctg gagcacctct cttatgacga aaggctgagg       120
     gagctgggct tgttcagcat caagaaggga aagctgagag gacacctcat tggagtcttc       180
     cagtacttga agggagcttg caagcaggaa ggggaacaaa cttctacatg gtctgaacag       240
     agatagacaa gggggagtgg ctttaagcta aaaagaggga agatttgggt gagatgttgg       300
     gaagaaatac tttactcaga ggttggtgtg acactggcac tgctgcccag agctgtgggt       360
     gccccatccc tgtacatgag ctgaaggcca gattggatgg ggctctgtgc agcctgatct       420
     ggtgggggca gccagcccat ggcaggggtt ggggtagatg ggttgtatgg cccttttcaa       480
     cccaaaccat tcaatgattc tatgattctc agataagcct gcctgcccat atctgagctc       540
     acggtgctcg ctggg                                                        555
//
ID   INV_GG      repbase; DNA   ; VRT   ; 2119 BP.
XX
AC   X02218;
XX
DT   22-1995 (Rel. 2, Created)
DT   26-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Chicken inverted repeat.
XX
KW   Inverted repeat; GGINV; INV_GG.
XX
OS   Gallus gallus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae;
OC   Gallus.
XX
RN   [1]
RP   1-2119
RA   Wang W.S., Robins J.A., D'Andrea R., Wells R.J.;
RT   "Inverted duplication of histone genes in chicken and disposition of
RT   regulatory sequences.";
RL   Nucleic Acids Res 13, 1369-1387 (1985).
XX
DR   GenBank; X02218; Positions     639    2757.
XX
CC   This is a protein.
XX
SQ   Sequence 2119 BP; 345 A; 770 C; 657 G; 345 A; 0 others;
     ggccccgccc tccagggagg aggaggcagt ggcgctcccg cccccgcctg ggccccgccc        60
     ctggtttcaa tcaggtccga ccatacgcca taacacccgc gcgcgccccg ccacatcctc       120
     actggtgtcg gacgactcag gctctcggca tgtctggcag aggcaagggc gggaaggggc       180
     tcggcaaggg cggcgccaag cgccaccgca aggtgctgcg cgacaatatc cagggcatca       240
     ccaagccggc catccgccgc ctggcgcggc gcggcggcgt caagcgcatc tcggggctca       300
     tctacgagga gacgcgcggc gtgctcaagg tcttcctgga gaacgtcatc cgcgacgccg       360
     tcacctacac cgagcacgcc aagaggaaga cggtcacggc catggacgtg gtctacgcgc       420
     tcaagcgcca gggacgcacc ctctacggct tcggcggtta aactcgtctc cgattccggc       480
     cacccgaact cgtttttagc aacccaaagg ctcttttcag agccgcccac ttggttccaa       540
     caaagagctg tgtcacctcg cctgatgtga cggggctttt tcacttaata gttaggctct       600
     tttatctccc ccagccgtat tttcagctct tcgctttccg tgtccggact gcagagctgt       660
     gtagcacagc tctagcgcct cgcggcgtcc ctccgttccc tcgcaagcgg ctcgctgcct       720
     ccgcttcccc gcagcaggct ctcaccgggc agctttcggg ctccgctcgc tccagggcgc       780
     gctcttgact tctattcccg ttgctagcga ccgggtcagg cacgtgcgac acagtgccca       840
     ggcgcgaatc cagcccctcc cttcggcacc gcgtccggaa aggccaggag aagggggccg       900
     gccccattac tcacagaccg ggggaagggc gaaggagaag caggttctgc cctgacagga       960
     accccccgag gtggggggag aaatggggaa gaggcggcta ttccgcttcc gcccgcccgc      1020
     aggccgcgca cgccgggctg cgcggcaaga ggcggacacc acaacggacc ccgcggtgtc      1080
     cgctcctttt ccccccaact gggcgtttcg cccgccctta cgaaaggcgc gcgcggggcg      1140
     cccacgcggg acgcggatgc gcggctgccg ctcgagaggg ggacggggag cggcttcagc      1200
     gcagcgtttc gggttgcagt caggacaggg cagcgacgcc caggggaaaa ctcggggctt      1260
     cccgaacgaa cacagcgcct ctccggcgga gctgcgaggg ccgcacggac ggaaaacccc      1320
     ccagtgccgc cgtgcgccca gcagtacgga acctcccgca acaacacacc acacaagcac      1380
     tcgtcgagtc accgcattcc gagctctttc tcgagactgt gggtggctct gaaaagagcc      1440
     tttgggtttc acttcgctgc tcggcgcgct tcctcggggc cggcctactt agccttggcc      1500
     ttgtggctgt cggtcttctt gggcagcagc acggcctgga tgttgggcag caccccaccc      1560
     tgcgcgatgg tcaccttgcc cagcagcttg ttgagctcct cgtcgttgcg gatggccagc      1620
     tgcaggtggc gggggatgat gcgcgtcttc ttgttgtcgc gggccgcgtt gcccgccagc      1680
     tccaggatct cggccgtcag gtactccagc acggccgcca ggtacaccgg ggcgccggcg      1740
     cccacccgct ccgcgtagtt gcccttgcgc agcagccggt gcacgcggcc cacggggaac      1800
     tgcagcccgg cccgcgacga gcgcgacttg gccttggcgc gcgccttccc gccctgcttc      1860
     ccgcgccccg acatcgccga tcagtcgctc agaagctcaa ctgccaactc aacagaaatc      1920
     aaaacacgca acagctgccc gcgctcgccc gcgcgccttt atatcccttc cccgttgcgc      1980
     gcccgccggc tcctgatagg cggacgtgtc ctcacgggga acgagcgccc aatggcgtag      2040
     cgaatctcgg cccgaccaat agcgacgggc gcccttcccc gccccgcccc tctctctgct      2100
     cacagcaatg gcggggcgg                                                   2119
//
