Repbase Reports |
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| 2025, Volume 25, Issue 1 |
| January 24, 2025 |
| Copyright © 2001-2025 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 847 |
Neptune-N135a_XL |
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retrotransposon from African clawed frog genome, consensus. |
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Submitted: 26-Aug-2024 |
Accepted: 24-Jan-2025 |
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Key Words: Neptune; Penelope; Non-LTR Retrotransposon; Transposable Element; nonautonomous; Neptune-N135a_XL |
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Source: Xenopus laevis |
Organism: Xenopus laevis |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus |
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Authors: Bao,W. |
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Title: Penelope-like retrotransposons from the African clawed frog genome. |
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Journal: Repbase Reports 25(1), 847-847 (2025) |
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Abstract: ~88% identical to the consensus. 3'-end determined. 5'-end is a internal truncation. Neptune-N135a_XL and Neptune-N135b_XL consist the two terminal reagion of a Neptune-like element. Compared to Neptune-N135b_XL, the 3'-end ~140-bp of Neptune-N135a_XL is the extruded region. One example locus is flanked by 15-bp TSDs: (TTTAGAATCAGATTT) TGTGCCA TTTACCAGGTTAGCGCTCCTTTATATCAGAACACCACACAATAATAAAAGTCAGttcccaggtt tattta aatattcacaagatattttcAAGGTGAACAGTTAACGATGTTAATCAGACATTACTATGAATCC ACTATA CAAACCAATTCTGGAAAGAATAAAAACAGTTGCACAATTGCAGATTTTATAATGTGGGTTTCCT GCACCT AGTgccataaaacactttttatagcTATATAGGGTCACTTACTCAGAGTTCCCCTTCCAAatcc tttact ttgcagtttaaaatagCACTATGAAACCATTTCTTGAGAAAGCACAAATGCAAAACTTGTAAAA GCTTGC TCTACCCGAGTCTTGCTGGAAGATTAGGCGTGGTGACACCGGACGCGAAGTTTACGTGCAGTGA TATCAA ACTGTGCACAGCAGGGAATGAAGAAGCAGAGGTccctcattttaaattttaatttataacTTGT GAAAAG TCAAATATCTGATGTTGAAATGATGTTGTACTGTCTGCAGGGGTTTATGTTTGAATCTTGGAAG ACTAAA CGTGATTTTTTCTCTAAAGAGCTGTGGTGtctctgtcttgctgctccttttcCTACGACTGACT ACCAGt tgctaattcccccaaaaattaCGTGTACAAGCATCCAGCTTGTCACAACagatataaaaagtgt tttatg ccAGTTCTATGTACTGGAAATCCACATTGTAAAAGCTGCGATTGggcaattgtttttattcttt cctgAT AATTCCATAATCTGAATTAAAGGAGTGCTAACCTAGTAAATGGCACATTGTATTGTTTGAGTTT TTGTTT GAGTTTTTATGTAGTATATATACTAATGAACTCGTTAGTATCACTGGGAAGAGTCGCATGTTTA TCTAGA ACACTAATTAACTAATTGCACTAATTAATTTTACATATATGTTCAGAGTGGATTGGGTAAAACT TGA (TTTAGAATCAGATTT).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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