Repbase Reports |
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| 2024, Volume 24, Issue 7 |
| July 24, 2024 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4544 |
Mariner-20u_ChOp |
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DNA transposon from the Chionoecetes opilio genome: consensus. |
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Submitted: 05-Oct-2023 |
Accepted: 24-Jul-2024 |
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Key Words: Mariner/Tc1; DNA transposon; Transposable Element; Mariner-20_ChOp; intron; Mariner-20u_ChOp |
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Source: Chionoecetes opilio |
Organism: Chionoecetes opilio |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Brachyura; Eubrachyura; Majoidea; Majidae; Chionoecetes |
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Authors: Bao,W. |
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Title: DNA transposons from the Chionoecetes opilio genome. |
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Journal: Repbase Reports 24(7), 4544-4544 (2024) |
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Abstract: ~97% identical to consensus. 2-bp (TA) TSDs, and the target sequence shows a preference: (tGTACa); TSD is derived from the central TA. The protein junction matches with other single-exon Mariner Tpases. Nevertheless, another less-likely interpretation of this family is that the TSD is 4-bp GTAC-specific target and TSDs, but this is inconsistent with the TA-TSD of almost all other Mariner families. Besides, it suggests that the Mariner Tpase is haphazardly captured in this non-Mariner family. For this uncertainty, this family is named as Mariner-20u_ChOp.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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