Repbase Reports |
|---|
| 2024, Volume 24, Issue 11 |
| November 24, 2024 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 8708 |
SINE3-1_Tca |
|||
|---|---|---|---|
SINE3-1_Tca, a novel SINE retroposon derived from the 5S rRNA in the chocolate nut tree genome. |
|||
|
Submitted: 18-Nov-2024 |
Accepted: 24-Nov-2024 |
||
|
Key Words: SINE3/5S; SINE; Non-LTR Retrotransposon; Transposable Element; SINE3-1_Tca |
|||
|
Source: Theobroma cacao |
Organism: Theobroma cacao |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma |
|
| [] |
Authors: Aguilera,P.M. and Grabiele,M. |
||
|
Title: SINE retroposons from the chocolate nut tree genome. |
|||
|
Journal: Repbase Reports 24(11), 8708-8708 (2024) |
|||
Abstract: Analyzed genome of Theobroma cacao: GCF_000208745.1. A single genomic copy at chromosome NC_030859.1, 98.6% similar to SINE3-1_Ipa of Repbase. 18 nt TSDs, 88.9% similar: AAATGAGCAGAGAGTATG/AAATGAGCAAAGAGTATT. Additional features: 5S rRNA gene related region (1-120); A box (50-61); Intermediate Element (IE) (70-71); C box (80-89); RNA binding domains (10-21; 60-76; 99-108); non-transcribed spacer transcription termination site (TTS) related region (121-123); poly A tail (124-138). This sequence constitutes the second report of a SINE3 at Viridiplantae.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||