Repbase Reports |
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| 2024, Volume 24, Issue 11 |
| November 24, 2024 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 8707 |
SINE2-3_Tca |
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SINE2-3_Tca, a novel SINE retroposon from the chocolate nut tree genome. |
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Submitted: 18-Nov-2024 |
Accepted: 24-Nov-2024 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-3_Tca |
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Source: Theobroma cacao |
Organism: Theobroma cacao |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: SINE retroposons from the chocolate nut tree genome. |
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Journal: Repbase Reports 24(11), 8707-8707 (2024) |
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Abstract: Analyzed genome of Theobroma cacao: GCF_000208745.1. Consensus of 25 sequences; mean 77.2% identity to consensus. Additional features: tRNA-related region (1-78); A box (11-21); B box (54-64); tRNA-unrelated region (79-158); poly T tail (159-163). 85.4% similar to SINE2-1_PD of Repbase; Au family.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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