Repbase Reports |
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| 2023, Volume 23, Issue 6 |
| June 16, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4332 |
SINE2-5a_BDi |
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SINE2-5a_BDi, a novel SINE retroposon from the Brachypodium distachyon genome. |
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Submitted: 05-Jun-2023 |
Accepted: 16-Jun-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-5a_BDi |
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Source: Brachypodium distachyon |
Organism: Brachypodium distachyon |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from plant genomes. |
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Journal: Repbase Reports 23(6), 4332-4332 (2023) |
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Abstract: Analyzed genome: Brachypodium distachyon v3.1 (Phytozome). Consensus of 50 seqs; mean 86.26% identity to consensus. Additional features: tRNA-related region (1-81); A Box (14-24); B Box (57-67); tRNA-unrelated region (82-279); poly T tail (280-285). SINE2-5_BDi variants a and b share 74.10% similarity.
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Derived: |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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