Repbase Reports |
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| 2023, Volume 23, Issue 6 |
| June 16, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4177 |
SINE2-5_Pha |
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SINE2-5_Pha, a novel SINE retroposon from the Panicum hallii genome. |
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Submitted: 05-Jun-2023 |
Accepted: 16-Jun-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-5_Pha |
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Source: Panicum hallii |
Organism: Panicum hallii |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from plant genomes. |
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Journal: Repbase Reports 23(6), 4177-4177 (2023) |
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Abstract: Analyzed genome: Panicum hallii v3.1 (Phytozome). Consensus of 50 seqs; mean 86.43% identity to consensus. Additional features: tRNA-related region (1-81); A box (14-24); B box (57-67); tRNA-unrelated region (82-280); poly A tail (281-288). Similar tRNA-unrelated region to SINE2-6_Pha. 97.92% similar to SINE2-2_PaM.
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Derived: |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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