Repbase Reports |
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| 2023, Volume 23, Issue 6 |
| June 16, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4272 |
SINE2-2a_Sit |
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SINE2-2a_Sit, a novel SINE retroposon from the Setaria italica genome. |
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Submitted: 05-Jun-2023 |
Accepted: 16-Jun-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2a_Sit |
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Source: Setaria italica |
Organism: Setaria italica |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from plant genomes. |
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Journal: Repbase Reports 23(6), 4272-4272 (2023) |
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Abstract: Analyzed genome: Setaria italica v2.2 (Phytozome). Consensus of 50 seqs; mean 86.87% identity to consensus. Additional features: tRNA-related region (1-83); A box (14-25); B box (59-69); tRNA-unrelated region (84-292); poly T tail (293-299). 98.31% similar to SINE2-4_PaM. SINE2-2_Sit variants a and b share 75.70% similarity.
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Derived: |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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