Repbase Reports |
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| 2023, Volume 23, Issue 6 |
| June 16, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4270 |
SINE2-2a_Lsa |
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SINE2-2a_Lsa, a novel SINE retroposon from the Lactuca sativa genome. |
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Submitted: 05-Jun-2023 |
Accepted: 16-Jun-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2a_Lsa |
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Source: Lactuca sativa |
Organism: Lactuca sativa |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from plant genomes. |
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Journal: Repbase Reports 23(6), 4270-4270 (2023) |
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Abstract: Analyzed genome: Lactuca sativa v8 (Phytozome). Consensus of 33 seqs; mean 81.37% identity to consensus. Additional features: tRNA-related region (1-91); A box (14-24); B box (67-77); tRNA-unrelated region (92-136); poly A tail (137-145). SINE2-2_Lsa variants a to c share 63.60% similarity.
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Derived: |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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