Repbase Reports |
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| 2023, Volume 23, Issue 6 |
| June 16, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4216 |
SINE2-1_Cqu |
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SINE2-1_Cqu, a novel SINE retroposon from the Chenopodium quinoa genome. |
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Submitted: 05-Jun-2023 |
Accepted: 16-Jun-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1_Cqu |
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Source: Chenopodium quinoa |
Organism: Chenopodium quinoa |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from plant genomes. |
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Journal: Repbase Reports 23(6), 4216-4216 (2023) |
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Abstract: Analyzed genome: Chenopodium quinoa v1.0 (Phytozome). Consensus of 11 seqs; mean 95.47% identity to consensus. Additional features: tRNA-related region (1-80); A Box (13-23); B Box (56-66); tRNA-unrelated region (81-184); poly T tail (185-191). 3 entire or nearly entire length copies; 10 copies with 12, 15, 17, 20, 25 or 33 nt TSDs. Au family member.
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Derived: |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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