Repbase Reports |
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| 2023, Volume 23, Issue 4 |
| April 27, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2662 |
SINE2-9b_Atr |
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SINE2-9b_Atr, a novel SINE retroposon from the Amborella trichopoda genome. |
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Submitted: 08-Apr-2023 |
Accepted: 27-Apr-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-9b_Atr |
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Source: Amborella trichopoda |
Organism: Amborella trichopoda |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from the Amborella genome. |
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Journal: Repbase Reports 23(4), 2662-2662 (2023) |
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Abstract: De novo TE library from GCA_000471905.1. Consensus of 11 entire or nearly entire length and poly A tail seqs; mean 80.06% identity to consensus. Additional features: tRNA related region (1-71; 114-184; 228-325); A box (14-25; 127-138; 241-252); B box (57-67; 170-180; 284-294); LINE-related region (72-113; 185-227; 351-389); unknown origin (326-350); poly A tail (390-400). SINE2-9b_Atr is identical to SINE2-9a_Atr but with an extra forward region related to SINE2-6_Atr; exists one copy with visible TSDs (scaffold 3; GAAAGGGGAGAGAGA/GAAAAAAGAGAGA). 20 consensus seqs belonging to SINE2-1_Atr to SINE2-11_Atr share the L1 lineage origin (L1-5_Atr and related seqs of Repbase).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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