Repbase Reports |
|---|
| 2023, Volume 23, Issue 4 |
| April 27, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2675 |
SINE2-8_Atr |
|||
|---|---|---|---|
SINE2-8_Atr, a novel SINE retroposon from the Amborella trichopoda genome. |
|||
|
Submitted: 08-Apr-2023 |
Accepted: 27-Apr-2023 |
||
|
Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-8_Atr |
|||
|
Source: Amborella trichopoda |
Organism: Amborella trichopoda |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella |
|
| [] |
Authors: Grabiele,M. and Aguilera,P.M. |
||
|
Title: SINE retroposons from the Amborella genome. |
|||
|
Journal: Repbase Reports 23(4), 2675-2675 (2023) |
|||
Abstract: De novo TE library from GCA_000471905.1. Consensus of 20 seqs; mean 85.63% identity to consensus. Additional features: tRNA related region (1-70; 112-182); A box (13-24; 125-136); B box (56-66; 168-178); LINE-related region (71-111; 133-230); poly A tail (231-239). SINE2-8_Atr is a homodimer from SINE2-6_Atr and exist copies with visible TSDs; forward region embraces 87% of length of SINE2-6_Atr, up to the poly T stretch of the second tandem repetion, while second region is full length; homotrimeric (354 nt mean) and homopentameric (578 nt mean) copies with visible poly A tail also occur but without detectable TSDs. 20 consensus seqs belonging to SINE2-1_Atr to SINE2-11_Atr share the L1 lineage origin (L1-5_Atr and related seqs of Repbase).
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||