Repbase Reports |
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| 2023, Volume 23, Issue 4 |
| April 27, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2665 |
SINE2-1b_Atr |
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SINE2-1b_Atr, a novel SINE retroposon from the Amborella trichopoda genome. |
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Submitted: 08-Apr-2023 |
Accepted: 27-Apr-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1b_Atr |
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Source: Amborella trichopoda |
Organism: Amborella trichopoda |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from the Amborella genome. |
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Journal: Repbase Reports 23(4), 2665-2665 (2023) |
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Abstract: De novo TE library from GCA_000471905.1. Consensus of 50 seqs; mean 92.64% identity to consensus. Additional features: tRNA related region (1-97); A box (14-25); B box (57-67); unknown origin (98-121); LINE-related region (122-160; poly A tail (161-170); at the end of the tRNA-related region there is a duplication of YTRACACC. SINE2-1_Atr members (a, b, c1, c2, c3) and SINE-1_ATr of Repbase share 70.00% similarity. SINE2-1b_Atr is monomeric and related to the complex SINE2-9_Atr. 20 consensus seqs belonging to SINE2-1_Atr to SINE2-11_Atr share the L1 lineage origin (L1-5_Atr and related seqs of Repbase).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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