Repbase Reports
2023, Volume 23, Issue 4
April 27, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2211

Mariner-8_OT

DNA transposon, consensus.

Submitted:
24-Sep-2014 		Accepted:
27-Apr-2023
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Mariner-8_OT
Source:
Oxytricha trifallax 		Organism:
Oxytricha trifallax 		Taxonomy:
Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea; Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha
[] Authors:
Bao,W.
Title:
DNA transposons from the Oxytricha trifallax micronuclear genome.
Journal:
Repbase Reports 23(4), 2211-2211 (2023)
Abstract:
> 98% identical to the consensus. No TIR except for the first 4 nt. /252-2966 /product="Mariner-8_OT_1p" /note="unknown" /translation="MASTQPYMXDHYEPPLTSPSVQLPPSVLPPGMDXELGEEPLMSWWELAPK IACLLQSISLREHPXQSFVEILKTLFNAHTVNHHWVHIXKEIERHAGKQS LELALRTPNEKEGDPIGXLDPALGDXKQXEQLKGVPKVRGGGPIQYTRQN XIKQTTINKHMFSSLQXEXTQTNHSPSVLPFDGCADPSEGVSSWGGDLPN IKRDVKKHDIISKSKKQLIDDELLRAKYQRKIKILNRQKQQRLDDKLLAL YTGPSPLQQEFSDTVNGILRLLVQAEKQEQDAIRQQLSLVMQLINESRSC QEHQHPGDGFHPHECRRRYLSTRPFQKKSFYRHSGACIFTNGNQSFQDKA LQRLYRLVNKLHRNQDDGASQTMRQSFNDTLSTNTYSKRTLRIVHRSRLM GLRRVQQSLLRKDWLSASVPQSTALYRAIESVRCEQAEEQAQTYIPQTHN NPFTXHQEXPKDVHMAKNSNNMNTHYQDDTTLNAFSIVKQQIESLPQQEP HAIKAGTLMHQSHIVSNVITTNSLRKQLNCLMKNLKNSNKWEGEHNQWRH DLKGIITRLVADWRSILKSKKHDANQQLLLTDAHSLDCQTISIEEVLDPL SKNTISKKEKMITMPQNALSTFQAKRNSVAFLVAQLNDLQMTISSCIHVV ERIAHCALVEQFEPKLAQLLCLEMITRNASCSLAKEKQNSDQSMKLRSVK VQDKGWVVNARQYAYQQVLEQLENSYGYVLRGSKVIPSTIRAAAEWIEEI PXAIKEMLQLEAKSQDPKYIMLFGHCNVAQILSTRAFLLEDVDCRHVEYD KSLQVTFSKHRRGRVLKTIXHTEEKCNNDERVEVDNPSPTHQSNDLPESI QSTTQGRDEEGSRSRTAIEMCKDQEXELDQLTIEIENXNPIQQELALPPE QHQX" /5450-5992 /product="Mariner-8_OT_2p" /note="DDE-Tpase" /translation="MRAKLQRQLAAGAFIEALCEGKEIINVDEAIIQCTDSRHYSWAPPHAHTM QSTSKRMSRVTVTAAATSTGCMLFQVSYGYTTSRTFVHFLTKLLRHLNEC DPGWRQKSILLIDNAPYHRAAYTTTMLSGFNAPYLFLGPYQFAMAPVEKV FRHIKSVDLNPCQLPVSTKQGSLIQSVGSR" /6141-8708 /product="Mariner-8_OT_3p" /note="CHROMO(CHRromatin Organization Modifier)" /translation="MIEWDFQNAFHQNFTLEYLLNQNEFLGRTLTPRAPEDDESSGATCLPRRP PLPPTLMEKVLFQNRYLMLQWQVQLMIPKLNQNQSPXSLTALLFDYYYIK FEFKRKNMAPRKQPKKQKKQRKHVLTLKKYKKKXSYQLAAIHDAKLENGR LMVLVSWQGFPDADRDWISRKDCIGTEAIDMVEAYLKEHKPQLLDNVLWN KLYKSRSKDPEQVHVQDDTMEIIDLTQCYTGCQATPVKTPSIPALSPEQV RSLXDTLYTLASQAGMQKATILQAISSEEESDDPLAELYDYETTIRDLEN WKKHAKITGQDKKEDIDYAAMKAETREQFTNSKLDEVLTTFKQMKLYDDD VNQLSMHDVFKDPLWHPGYRDQSLNVCLVHAVNMMVGGPLFDVASKFTQL YLSRTHMAKLREPEMLWEHGYSLKNLKHVIFDPNTNCWMSPHXLYLLSGE GLRVIQSCKKGGLYAFLETVKSHTRFFFQMMVEVLHDIDGEEDVKQELHA GVIAKVDDVWQILDSAEKWPJRIEQDNRLANRWLRGVKYLGLSILEKDNP PKSKRQAFKREWEMILAGDTIYSKERKQKALKSKKQMTKKHDRKHLQRAG SKQYRNSSSXPNETKSRASLEEQILGKRSDCHRESEVRAVKNMMGERLRD GKEKKKKGAXMTVFTAEETKIQQDLIKIREKLEQIIFYRLHFASYDELPR FKELMKKSGAPVEHEEEAHLAWHWQVVTSQRADLLHFKKDIELSWKKNDS KGYKKATPQSRTLELQEMLRDVIEASEDEVISFIKKTYQRCPLMPRSLLT LLIQESSSAEIGRLAGWHSKVIEPKAREVXXQNYSDEHEKAVEAITKEIE KLVEQ".
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Chen,X., Bracht,J.R., Goldman,A.D., Dolzhenko,E., Clay,D.M., Swart,E.C., Perlman,D.H., Doak,T.G., Stuart,A. et al.
    The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development.
    Cell 158(5), 1187-1198 (2014)

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