Repbase Reports
2023, Volume 23, Issue 4
April 27, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2235

Mariner-60_OT

DNA transposon, consensus.

Submitted:
06-Nov-2014 		Accepted:
27-Apr-2023
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Mariner-60_OT
Source:
Oxytricha trifallax 		Organism:
Oxytricha trifallax 		Taxonomy:
Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea; Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha
[] Authors:
Bao,W.
Title:
DNA transposons from the Oxytricha trifallax micronuclear genome.
Journal:
Repbase Reports 23(4), 2235-2235 (2023)
Abstract:
>98% identical to the consensus. Both 5'-, 3'-end are determined. /555-1412 /product="Mariner-60_OT_1p" /note="unknown" /translation="MTSKKANIEAQENTNEDQTIANLTTRLGFSNSTQKDNEMILEDEALRPQS QKRTNDIQEKYQSIGQFSHGTCSDRLDEGVTAPLNQQSSQQDQDQILLEI NEISKEQIKQFNKQLFNNNYTHNNLTAISKYKKLAKQQQKDKELLQKYVK PTRDQVHLEKYYKLTIKLLKEAELKEKQAQRDQMHYVTYGLYAISKSRES RIPLEDLKSHVCCKKYIRSRLFQKNRFFKHTRNCVLKPECRSFISQVQSR MIEVIQRIYKSPEESLSKYLSSLFQDTLQTKKFSK" /1512-2801 /product="Mariner-60_OT_2p" /note="unknown" /translation="MTFNKILGEIKLKIQYEPIIDEQRCNLQISAICDSQGMIQVVEPLPNELK SQVFISTRSQLNENEKHSIEGSKSNSIAPYTFTRDNSLYDREIVAIIQES NSLRTKILAIMDTLKSNSKWSDHHEQWRNELTTMLLKLLDDWRELVKSKK HDLLQQLLKLEGLMGQDQPIDLSPLMDPLFLEFIPKKECLVKPPRFSKAK KRQKRMSPNQFMPQWAALHEQLKLNLSIVERVVKYTIVQAKEFKLVPILC LERIIKNTHYSILKMKKKSITSQVSMSSSVKWQPWAVIRKLSSQQEVMQQ MEHHFSYILKGATVQASTLRQALTWLETLPPLLEQISVWEIKGADPHFKM IMGESNASQLLNSRAFLLEDETSRDVVFDTSIALQYTTFKPGKKEITTDI ILQNTSPLKMRSLSECDDSRILEESVQPE" /4436-6043 /product="Mariner-60_OT_3p" /note="DDE-Tpase" /translation="MKNFDQHQEYFEXFDQSGRANQQHHSYQSDYYSELDQFHQPSQSVIDKTH KQILNDEPSYCMTQLISQSLRNSNQVVIRTHSCNSLKATRDQFYQDFKRA NNTSNGIFVDPKQIVVQTMKHEPGLTSMVGQSAIRSLAVTTLQFLDQVNN QQDQFQDSTIQKEQVQHTGFHTIAQESQFNDQLCHGIDSYIQQRISPFHK LQQNRKSPEFVSTQLKARNEKIERLLQEGYQLKSIASIXGVKKSIVQGVI KRNKQSLGKLAIQNNTLQQKSFSNRAKNIIREMVRESGKIIATTAIQKQI KNEIGVSLSKYHIVKFLKGDLGLSYHKVYQITPNHNTTVSKLSRQLAASE FIRALCRGKVLTNVDESIVQSTDNRHYTWAPPGTSTVQTSSRRMIKVSIT AAACSNGQMLFTVNNGTTNSSTFINFLILLVRHLSILDPWWYTNYLIIVD NAPYHKSQLAIEAIRLMGLPILFLGPYQFDLAPVEQVFRCIKQRDLNEAR CPVSTKYFLIIFHLFLGSNSQSIYSNWLFKYQIWT" /6689-8707 /product="Mariner-60_OT_4p" /note="unknown" /translation="MFLIYKKPELLDIKVYQQRCTARTKRVHNGQIVVNDSAKLAVPQDNQKIK ADNAKPSKSITQALVGQHKQAIRTEGKVEECINEAVVDQEDVTTFQSKHI DPELDDYECTFIDYSNEHYNKLVNKNDRFLDIDYGSMVQQTREQFLQGAY KQILQEFKTTRLYNEEVQQMPTDDIFKNPYWHPGRQDQSTLTCFITASNM VAGGALFDSPEKFHALYESRAHISKSRKLEMPWEVGYCYKNLPYLFFEPK SHQWYSPIPTRVISGIILRNMKANIHQGWWGLLETDNPDSKFIIQVMVLN TVNQNGKQAPIKQCHAAVVVKDQNRWLLLDSAEEGTIEITPEGDALAEWY QGVYYIAMLAIRADNPPKDKRAAFEREWYRIMKGEQVIKQGGNRKLIMSS RRSVRKDRRTNPHNQGNKQQRTNKPSIPISIPRKSRAEQLIGKRADRGKD LDARTALFDSTLKGRQQRSQASVKSKQERLQTIQQQQVKIMDDTMKVFEK MLQYISAISKFELLPFPDNVSKQVQAPVEEREIVNAAYSWVVLKGSRTKL AHFKTQIIEDQEELKQKEQIVGSQVQRMDWVEEKLNKIIQQLDQQLFSFA IKLFDENPFVPYTFASHLKRIICNKNSTKLQKCYDEEVKIKLAKEIKTND PRETPDDSKASYQTIKKLISKL".
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Chen,X., Bracht,J.R., Goldman,A.D., Dolzhenko,E., Clay,D.M., Swart,E.C., Perlman,D.H., Doak,T.G., Stuart,A. et al.
    The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development.
    Cell 158(5), 1187-1198 (2014)

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