Repbase Reports
2023, Volume 23, Issue 4
April 27, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2232

Mariner-57_OT

DNA transposon, consensus.

Submitted:
28-Oct-2014 		Accepted:
27-Apr-2023
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Mariner-57_OT
Source:
Oxytricha trifallax 		Organism:
Oxytricha trifallax 		Taxonomy:
Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea; Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha
[] Authors:
Bao,W.
Title:
DNA transposons from the Oxytricha trifallax micronuclear genome.
Journal:
Repbase Reports 23(4), 2232-2232 (2023)
Abstract:
>92% identical to the consensus. Both 5'-, 3'-end are determined. >Mariner-57_OT_1p 55-1293 MLKKEGILFENTVFIQVNIQLCFFGRQLPSSSRPYTKCKLNLQKFLFNLH RKSHFLLYKVLNLNSHFLLWQKWKKSSCSHKFEFVALVSFSTNYRQSTVS LYLQMSALQPFSIFLQHLEFFKVLFSQLILNYFSQQFKNNNQELPAIFQT CEDYSTFLFHESPKFQNHTQRSLVLKSSVGFLVGQIGFKVGISYLLQELE RVFGYRRLLFKFKKLIRFNQDQLIILKIQIKNFAGNLKHFTNIQCYQKNC VNNRRKTQRIKTYQILEIQNRCSLKLNTNRTLIHQHLMRAILVEKPLPAQ AKRGGERQFTKVLNTLNLLIKRNQYFQIPTTILNSSWSLKSLRYQGILRI YHDLFLSLFQINLKKTTQSLIKPGLQRDLVTLKVAIQKLMQSWGRTESKY YSNQKQLTRRAC >Mariner-57_OT_2p (reverse gyrase) 1440-4085 MSLKTTCSSNFYDGMFSLIHELNLNVKMDLQIKTRLFVQSLLYYRNEIIS VSEDILQNAMTLLAQRPNSEQTLGLANYIFINEIENFSKLQDELVLLDSK NIGIIPLMAGTFCSFKIDPQVVRLLPNTLQCLNKPFIQVLKQDRGLRLIR EIPINVVGDFVQICSLSQSSNYNELDQMIKHISDIFIKKWDYLDQSDFSL LIAQLSVELKERNINWIGRLSSIIQVIDQVVTIQLEKGVKNRPDLIADLI NGNATTIKQILKNPKKVDEFSCQQFYRMIGKFKKLNKQIKEVDTFCYAIQ ESHVSQNEGIQAIEKLLGFSFLTLQRLCLKFVLRSQQRYVFLNFGIGNGK TLLCASLAVLLALQLNKSCIIIGKSDYLVLRDEKRFQNMIIGSELNVNYN QFEPKLGVYYMTQKYFEGQCTQKEFKEQLKECCIVVDEYDWIIFDGPPHQ MEESILCLKEAAFLVGLTGSILSQKEETCLDVAFKEKEIKFPSLNSLKGD RKIHLQDMIFTHSQQEYCKYLYETCMKQTLQTPVIVVASSSYSMIDAYFG KFKEIQFFSMKSVKGSKTDAYLEGKFNMKNTNKRFGVYLLSEVQGRGTDL QSSREIEQSGGIYLIIADIFARRSTSQIIGRVGRLENKGQWRQLIWQGGS LDTIEQAISIKQDFLENEMHIRFSKLQTMLAKRIEDEKVKETCHVFCGQH VPNSKDSIEKDCTTQSEGHENAKRVKDFLIDLNIQEGIKDDPDSSEQSGR DEVFEEELQLMKQDGLNEFRAAIEASNIEGEDFESKLDTLSQSAREQAIK IVQGQQAIQSFNKRSSKINQKMLKQDMLSSKQQVNKELEAKPQQQKNQKK QQASPHDNRKAVMSNNNLLQKRTTRSQVVQQ >Mariner-57_OT_3p (DDE-Tpase) 5967-6857 MFKKFKPRTRHLIEQYLSEGVQPITCKAISEKIWNDLDQQVSISSVRLFL KKGLGISFKKQYYLSPRVNNLQSKLQRQAAAYFYLKNLXEGKVIINIDES ILRYSSNKGRKWSEKSKPSFNFSSQRFSEISIIAGLVNNNSAFFTVNRGK XCSQIVFYFMIKIIRFLEQSNQDWRQDHIFMLDNASYHRSKYLTQKIEKY KIPVMFLGPYHFQLAPVERLFAGIKKLEFQGIIENNLRKLKDRRNSYGIV QNKRNILLTSIAQGILRLKIDWANSCYFKAVVTALNDISMKDI >Mariner-57_OT_4p 6859-7680 MYSVKQNKLNYGVSRNKKYSLFYLILQVQSHNTLLNVLLNSFYVKNIDIK TSQIRLPKHFKLQSHNIKHKFQAIRIFSILRIKITSLQQIFNFIFSKILK ILLNIILSISRLSLIKYKCILSNLQKFKSLREIKQIEKFIILVSJIYLTF KIYSFLINIFTQEQFLYSIFLQFLIFQIQSFYFQGLLKFIQIIAQKQILK LFKYFFNKMQHLSNYWKQYTGLFKLGFPKIIKLQNQKFQVISIYIIQDEQ DFQLLINYQIVKDLKQFNILTLQ >Mariner-57_OT_5p (methyl-transferase) 9531-10337 MKDKIQPQKYEQQYQASFFVIQDFSWGTKRFNNKQAQYQGNISNIEMWNA LIYDAILINNSSKFLVIVIDPPWKRTSCKFNYQTQSNKFIFDSIPFEKLQ SDGYVFLWVTNNQMQDAIKIMNEKGYEKCDILVWIKLNEDKTLYNNIGFY LRHVAEFCIIFRKKGLLRNQERDQYCTFKAIYQQKKPESPAKNQIVFINQ WKRWCLITNTQIYLQENATKEINGFQLETSLYRCLRNLIIEATFFGIQFN KEIINLWIKISFYTSKILP.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Chen,X., Bracht,J.R., Goldman,A.D., Dolzhenko,E., Clay,D.M., Swart,E.C., Perlman,D.H., Doak,T.G., Stuart,A. et al.
    The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development.
    Cell 158(5), 1187-1198 (2014)

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