Repbase Reports
2023, Volume 23, Issue 4
April 27, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2198

Mariner-10_OT

DNA transposon, consensus.

Submitted:
24-Sep-2014 		Accepted:
27-Apr-2023
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Mariner-10_OT
Source:
Oxytricha trifallax 		Organism:
Oxytricha trifallax 		Taxonomy:
Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea; Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha
[] Authors:
Bao,W.
Title:
DNA transposons from the Oxytricha trifallax micronuclear genome.
Journal:
Repbase Reports 23(4), 2198-2198 (2023)
Abstract:
>98% identical to the consensus. TIRs are 126-bp long. Tpase is similar to that of Mariner-1_OT. A 2.7-kb central region, from position 7000 to 9700, is different from that of Mariner-10B_OT, however, in other region they are highly identical. /1085-4006 /product="Mariner-10_OT_1p" /note="unknown" /translation="MLLQQADFAGYNKTFDFKQYVRKYINNKKPKKIKHSHKSKSVVSQPLDVT AAIEELKESEQATNLSFASDQNQNKEPLPQLFINYGSIIGHEILIKHFES FKNSQYYQRSCILQEIVTRNTQSLFSFLSNFENVSDQKLSENLFSLLVDL IQSNNNLDEDSKPRIFLAALGYYMGERVQIEDELIQESILLLIRSPNTRQ ALGLANFVFFNSVAAFTKQLAPVQKLDSTLPYIIQLMGQTWQLFAVDSQV QKLIPTSFFILNVPFMTLLKQDCGLHLIRDIPVEYTEYFVRICALSCSPT VEALKDYISITRATFLQKQEVIDSNTMVYFMKGLAQRLQSRDEQWVGKVE QFKKLQQQIIEAQIEKNVSVSNSIIENCLNGDCSEIQRILHLPKNMEAFS DKTIVDLLQLFENANISHMLARAFNSQPRNERLSVSNDLEKLQQNLGFKL YSSQILCINYICENLHANHLIHFGIGNGKTLICVALAILIALKTKLSVII VGKNEHLVQRDYQKFQKVISAMELDSNHNFFAKSTGIYFFTQPQLKKQMK AAKFMSVWHDSIVLIDEYDWILFDGSADNIINQLNFYKQSRSIIGFSGSH LSQGEENCLSLALHSTPVVFPTLDKLQGDKKTQLADLLISSNQGDYLQRI KEIIKDQVAVSPVLIVASTNYSAIEIGLKKSDFDFISFNHSQATAIESVL EGRYLMRNASKNYGVYLLNEPQGRGTDIQTNDEIDQNGGSYLIIADVFSQ RSEEQIIGRIGRLNTKGRWQRVLYKQASKDSAEQLLIVEKKEIELILARK HNQVQSILQNRLEAMENFJEQNQVPQEQISAELSNEQEQDNIVREIVQHI VSLTEKAYSEASNPAAVVKQDNLEEEKEPQQIEEQGEQSKLGFYQPSLIE LIEQKMSQNPVLQDKPFEQVQQLVHRSLKRQHHEITKAQSRERSKSKSSS ASSKRRLLKGQQKLELIKEQNKT" /5274-6770 /product="Mariner-10_OT_2p" /note="DDE-Tpase" /translation="MESYSKKRQSRLSEFFRLEDKDYDGNSSSEEQSSSSGSEDSKDYAEYLTT NMLYQRNITLADVSIEEVSEKDMIQLFNEIRDEISEFEIDGFIIDPKEKY RESTKKGAKESLLNDSQIXTLGQLVLKLYTEYKKSDLEPQSMMDSAQDFD FKALEAKVIENHKVKDQIPIFGQHTQLDAIVPRRLQKQLRKEKQLQEKEL KLAEESLRLRVSEKLTYLQIMDRLGISYYKLRRYLRSPVKKAQFWNLKQI NRGKYKKLHSRARTHIVNMLMYNTQPVQLSDIQQSLQKNIQLRCSKQMIR RFLKNELMMTYKQIKQISTLHNSNSSKLQRQYAAQQFVEHLSKGRRIINI DESTLNQTDQRHRGWTAPYVKNRVTNSQRLKQMNLIIGVASTGELYYTVN HGRTNQHSFMYFLCKLVNVLDSVDTSWRENTLILLDNAPYHRSQSIMDKY LDLALPIMFLGPYHYRIAPVELMYSWIKNRDLNPLNTRAQSKQELLQQ" /8727-10232 /product="Mariner-10_OT_3p" /note="unknown" /translation="MYNFPKLKVYKIQKYDKNYFHNKNQLIIYLFIIVVIFTWNKSTILMDEQI QYSNYLWQKKSINSRKNQIISGAKNNINVKRETVNLLYAKQKLLLWRGAP GRELNKQKSLGLQDQSQSDKMRKMVSQRVKNEKWEIENVFFQLKSQSISL GLKYKVGKNKMVPLEQIKIQEMIINKYEFNIQIKTMILVKEQNDFFIENQ TQNKSFLITGAYLQALYLPFLFYLFLLFYFNSIQFNLISQQFSKKILSFY LLKIPILQNIQPQSYYLYINPLYLLKSKILNNMINNSPIYYTYFINYQLS TLIKMFYLQLSYLQNLNKYAKQSKIYRVEYQAKVPQAPSQFIQSELRHPI QSASDLLVIQDKCASEMFVTIPKLNWLLSVTNISVYKQRLNKCEKYEKSA FTKNGEHESIELELLFKVHTKRSEVSGVGARCVGNKESAIGIVNCSPFDF HYQFNYQSSNYQLIKFKLNSNVEVKPHPLTNSVNGKTLHLIGQQGTNPIY S".
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Chen,X., Bracht,J.R., Goldman,A.D., Dolzhenko,E., Clay,D.M., Swart,E.C., Perlman,D.H., Doak,T.G., Stuart,A. et al.
    The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development.
    Cell 158(5), 1187-1198 (2014)

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