Repbase Reports |
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| 2023, Volume 23, Issue 4 |
| April 27, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2287 |
Helitron-N7_Ipa |
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Helitron-N7_Ipa, a novel transposon from the Ilex paraguariensis genome. |
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Submitted: 08-Apr-2023 |
Accepted: 27-Apr-2023 |
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Key Words: Helitron; DNA transposon; Transposable Element; Nonautonomous; Helitron-N7_Ipa |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: Helitron transposons from the yerba mate genome. |
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Journal: Repbase Reports 23(4), 2287-2287 (2023) |
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Abstract: De novo search via RepeatModeler from GCA_905181385.1. Consensus of 50 seqs; mean 90.09% identity to consensus. Additional features: carries a complete copy of SINE2-16_Ipa with visible 13 nt TSDs between 999 and 1230; 76.60% similar in a strecth of 159 nt at 5 prime and 71.00% similar in a strecth of 121 nt at 3 prime to Helitron-N4_Ipa; flanked by A and T nucleotides, respectively, embedded in min. 10 nt AT-rich regions.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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