Repbase Reports |
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| 2023, Volume 23, Issue 4 |
| April 27, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2294 |
Helitron-3_Ipa |
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Helitron-3_Ipa, a novel transposon from the Ilex paraguariensis genome. |
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Submitted: 08-Apr-2023 |
Accepted: 27-Apr-2023 |
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Key Words: Helitron; DNA transposon; Transposable Element; Helitron-3_Ipa |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: Helitron transposons from the yerba mate genome. |
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Journal: Repbase Reports 23(4), 2294-2294 (2023) |
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Abstract: De novo search via RepeatModeler from GCA_905181385.1; CDS predicted via Fgenesh and protein annotated via InterProScan. Consensus of 100 seqs >3000 nt; mean 86.11% identity to consensus. Additional features: from 1174 to 1603 is repeated the 5 prime region with 87.20% similarity; a stretch of 429 nt of the 5 prime region of Helitron-3_Ipa and Helitron-N8_Ipa share 73.90% similarity; flanked by A and T nucleotides embedded in min. 10 nt AT-rich regions.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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