Repbase Reports |
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| 2023, Volume 23, Issue 3 |
| March 25, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 1955 |
SINE2-16_Ipa |
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SINE2-16_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome. |
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Submitted: 01-Mar-2023 |
Accepted: 25-Mar-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-16_Ipa |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: Novel SINE retroposons from the yerba mate genome. |
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Journal: Repbase Reports 23(3), 1955-1955 (2023) |
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Abstract: De novo TE library from GCA_905181385.1. Consensus of 300 seqs; mean 79.92% identity to consensus. Additional features: tRNA related region (1-93); A box (16-26); B box (69-79); tRNA-unrelated region (94-198); poly A tail (199-207); there exist 170 complete copies of SINE2-16_Ipa with visible 13 nt TSDs within Helitron-N7_Ipa; no sequence similarity to other SINEs in Repbase.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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