Repbase Reports
2023, Volume 23, Issue 3
March 25, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 1929

Gypsy-173B_CGi-LTR

LTR retrotransposon from the Pacific oyster genome: consensus.

Submitted:
05-Jan-2020 		Accepted:
25-Mar-2023
Key Words:
Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous; DNA transposon; Gypsy-173B_CGi-LTR
Source:
Crassostrea gigas 		Organism:
Crassostrea gigas 		Taxonomy:
Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Bivalvia; Pteriomorphia; Ostreoida; Ostreoidea; Ostreidae; Crassostrea
[] Authors:
Bao,W.
Title:
LTR retrotransposons from the Pacific oyster genome.
Journal:
Repbase Reports 23(3), 1929-1929 (2023)
Abstract:
~94% identical to consensus. TSDs are 4-bp long. This short sequence does not represent a complete TE, even though a hairpin structure (pseudo-hairpin) is observed. Actually, it is is derived from Gypsy-137-CGi, whose LTR is uncanonical.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Zhang,G., Fang,X., Guo,X., Li,L., Luo,R., Xu,F., Yang,P., Zhang,L., Wang,X., Qi,H., Xiong,Z., Que,H. and Xie,Y.
    et al
    The oyster genome reveals stress adaptation and complexity of shell formation.
    Nature 490(7418), 49-54 (2012)

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