Repbase Reports |
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| 2023, Volume 23, Issue 1 |
| January 25, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 623 |
SINE2-1c_Can |
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SINE2-1c_Can, a novel SINE retroposon from the Capsicum annuum var. annuum genome. |
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Submitted: 27-Dec-2022 |
Accepted: 25-Jan-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1c_Can |
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Source: Capsicum annuum |
Organism: Capsicum annuum |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: SolS-XI, a novel SINE retroposon family from Solanaceae. |
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Journal: Repbase Reports 23(1), 623-623 (2023) |
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Abstract: Analyzed genome: GCF_002878395.1. Consensus of 50 seqs; mean 94.83% identity to consensus. Additional features: tRNA related region (1-81); A box (13-23); B box (57-67); tRNA-unrelated region (82-181); poly A tail (182-194); consensus sequences of SolS-XI subfamily 3 in Capsicum (SINE2-1c_Can, SINE2-2c_Cgl, SINE2-8b1_Cch, SINE2-8b2_Cch, SINE2-8b_Cba) share 98.30% similarity; this family is absent from other Solanaceae genomes (Datura stramonium, Jaltomata sinuosa, Lycium barbarum, Nicotiana tabacum, Petunia axillaris, Solanum lycopersicum, Solanum tuberosum).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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