Repbase Reports |
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| 2023, Volume 23, Issue 1 |
| January 25, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 590 |
Mariner-N2a1_Cch |
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Mariner-N2a1_Cch, a novel transposon from the Capsicum chinense genome. |
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Submitted: 28-Dec-2022 |
Accepted: 25-Jan-2023 |
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Key Words: Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; Mariner-N2a1_Cch |
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Source: Capsicum chinense |
Organism: Capsicum chinense |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: Short transposons from the Capsicum chinense genome. |
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Journal: Repbase Reports 23(1), 590-590 (2023) |
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Abstract: Analyzed genome: GCA_002271895.2. Consensus of 22 seqs; mean 90.26% identity to consensus. Additional features: 32 nt TIRs 85.90% identity; TA TSDs; 96.40% similar to Mariner-N2a_Cba. There exist four major subpopulations of Mariner-N2_Cch (a1, a2, b and c) which consensus share 67.90% sequence similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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