Repbase Reports |
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| 2022, Volume 22, Issue 11 |
| November 26, 2022 |
| Copyright © 2001-2022 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 7281 |
hAT-N4a_Cba |
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hAT-N4a_Cba, a novel transposon from the Capsicum baccatum genome. |
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Submitted: 08-Nov-2022 |
Accepted: 26-Nov-2022 |
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Key Words: hAT; DNA transposon; Transposable Element; Nonautonomous; hAT-N4a_Cba |
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Source: Capsicum baccatum |
Organism: Capsicum baccatum |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: Short transposons from the Capsicum baccatum genome. |
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Journal: Repbase Reports 22(11), 7281-7281 (2022) |
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Abstract: De novo TE library from GCA_002271885.2. Consensus of 25 seqs; mean 97.92% identity to consensus. Additional features: 28 nt TIRs 92.90% identity; 8 nt TSDs; 96.69% similar to hAT-N25_STu of Repbase. There exist two major subpopulations of hAT-N4_Cba (a and b) which consensus share 86.00% sequence similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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