Repbase Reports |
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| 2022, Volume 22, Issue 11 |
| November 26, 2022 |
| Copyright © 2001-2022 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 7296 |
SINE2-8a_Cba |
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SINE2-8a_Cba, a novel SINE retroposon from the Capsicum baccatum genome. |
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Submitted: 08-Nov-2022 |
Accepted: 26-Nov-2022 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-8a_Cba |
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Source: Capsicum baccatum |
Organism: Capsicum baccatum |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from the Capsicum baccatum genome. |
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Journal: Repbase Reports 22(11), 7296-7296 (2022) |
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Abstract: De novo TE library from GCA_002271885.2. Consensus of 125 seqs; mean 91.22% identity to consensus. Additional features: tRNA related region (1-82); A box (14-24); B box (58-68); tRNA-unrelated region (83-178); poly A tail (179-188); 98.95% similar to SINE2-1a_Can of Repbase. There exist two major subpopulations of SINE2-8_Cba (a and b) which consensus share 74.50% sequence similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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