Repbase Reports |
|---|
| 2022, Volume 22, Issue 11 |
| November 26, 2022 |
| Copyright © 2001-2022 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 7292 |
SINE2-10a_Cba |
|||
|---|---|---|---|
SINE2-10a_Cba, a novel SINE retroposon from the Capsicum baccatum genome. |
|||
|
Submitted: 08-Nov-2022 |
Accepted: 26-Nov-2022 |
||
|
Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; Au; SINE2-10a_Cba |
|||
|
Source: Capsicum baccatum |
Organism: Capsicum baccatum |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
|
| [] |
Authors: Grabiele,M. and Aguilera,P.M. |
||
|
Title: SINE retroposons from the Capsicum baccatum genome. |
|||
|
Journal: Repbase Reports 22(11), 7292-7292 (2022) |
|||
Abstract: De novo TE library from GCA_002271885.2. Consensus of 260 seqs; mean 93.16% identity to consensus. Additional features: tRNA related region (1-81); A box (13-24); B box (57-67); tRNA-unrelated region (82-180); poly T tail (181-186). There exist nine major subpopulations of SINE2-10_Cba (a to i) which consensus diverge in length mainly by indels (186 to 153 nt) and base composition also, and share 72.30% sequence similarity.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||