Repbase Reports |
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| 2021, Volume 21, Issue 8 |
| August 24, 2021 |
| Copyright © 2001-2021 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4634 |
LTR-4a_Ipa |
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LTR-4a_Ipa, a short LTR element from the yerba mate genome. |
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Submitted: 14-Aug-2021 |
Accepted: 24-Aug-2021 |
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Key Words: LTR Retrotransposon; Transposable Element; Nonautonomous; LTR-4a_Ipa |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: Retroposons from the yerba mate genome (Ilex paraguariensis). |
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Journal: Repbase Reports 21(8), 4634-4634 (2021) |
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Abstract: 1..178 /feature="LTR" 304..481 /feature="LTR" Analyzed genome of yerba mate: GCA_905181385.1. This consensus is generated from 120 entire length sequences with mean 90.4% identity to consensus. This element arranges single (LTR-I-LTR) or in tandem of I-LTR structures, 3, 4, 5 and up to 15 (scaffold CAJIXV010001237) repetitions, flanked by 5 nt TSDs. There exist two major subpopulations of LTR-4_Ipa (a and b) which consensus share 73.1% sequence similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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