Repbase Reports |
|---|
| 2021, Volume 21, Issue 8 |
| August 24, 2021 |
| Copyright © 2001-2021 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4628 |
LTR-2c_Ipa-LTR |
|||
|---|---|---|---|
LTR-2c_Ipa-LTR, LTR element from the yerba mate genome. |
|||
|
Submitted: 14-Aug-2021 |
Accepted: 24-Aug-2021 |
||
|
Key Words: LTR Retrotransposon; Transposable Element; LTR portion; LTR-2c_Ipa-LTR |
|||
|
Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
|
| [] |
Authors: Aguilera,P.M. and Grabiele,M. |
||
|
Title: Retroposons from the yerba mate genome (Ilex paraguariensis). |
|||
|
Journal: Repbase Reports 21(8), 4628-4628 (2021) |
|||
Abstract: 1..5 /feature="inverted repeat region" 8..12 /feature="inverted repeat region" 2164..2168 /feature="inverted repeat region" 2171..2175 /feature="inverted repeat region" Analyzed genome of yerba mate: GCA_905181385.1. This consensus is generated from 50 entire length sequences with mean 86.7% identity to consensus. This element has 5 nt TSDs (measured in Solo-LTRs). There exist three major subpopulations of LTR-2_Ipa-LTR (a, b and c) which consensus share 84% sequence similarity.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||