Repbase Reports |
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| 2021, Volume 21, Issue 7 |
| July 26, 2021 |
| Copyright © 2001-2021 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 3981 |
SINE2-1b_Can |
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SINE2-1b_Can, a novel SINE retroposon from the chili pepper genome (Capsicum annuum). |
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Submitted: 14-Jul-2021 |
Accepted: 26-Jul-2021 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1b_Can |
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Source: Capsicum annuum |
Organism: Capsicum annuum |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: Short transposable elements from the chili pepper genome (Capsicum annuum). |
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Journal: Repbase Reports 21(7), 3981-3981 (2021) |
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Abstract: 1..81 /feature="tRNA-related region" 13..23 /feature="A box" 57..67 /feature="B box" 82..182 /feature="tRNA-unrelated region" 183..194 /feature="tail" Analyzed genome of chili pepper: GCF_000710875.1 v1.0. This consensus is generated from 250 entire length sequences with mean 90.7% identity to consensus. There exist two major subpopulations of SINE2-1_Can (a and b) which consensus share 70.1% sequence similarity. SINE2-1b_Can is 84.5% similar to Lj_SINE-3.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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