Repbase Reports |
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| 2021, Volume 21, Issue 11 |
| November 25, 2021 |
| Copyright © 2001-2021 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 6560 |
SINE2-7a_Car |
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SINE2-7a_Car, a novel SINE retroposon from the Coffea arabica genome. |
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Submitted: 26-Oct-2021 |
Accepted: 25-Nov-2021 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-7a_Car |
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Source: Coffea arabica |
Organism: Coffea arabica |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: Retrotransposons from the Coffea arabica genome. |
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Journal: Repbase Reports 21(11), 6560-6560 (2021) |
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Abstract: Analyzed genome of coffea: GCA_003713225.1 v1.0. Consensus of 250 total genomic full length seqs; mean 89.9% identity to consensus. Additional features: tRNA related region (1-82); A box (14-24); B box (58-68); tRNA-unrelated region (83-187); poly A tail (188-203); two major subpopulations of SINE2-7_Car occur (a and b), which consensus share 79.8% similarity.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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