Repbase Reports |
|---|
| 2021, Volume 21, Issue 11 |
| November 25, 2021 |
| Copyright © 2001-2021 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 6568 |
LTR-3a_Car-LTR |
|||
|---|---|---|---|
LTR-3a_Car-LTR, LTR element from the Coffea arabica genome. |
|||
|
Submitted: 26-Oct-2021 |
Accepted: 25-Nov-2021 |
||
|
Key Words: LTR Retrotransposon; Transposable Element; Nonautonomous; LTR-3a_Car-LTR |
|||
|
Source: Coffea arabica |
Organism: Coffea arabica |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea |
|
| [] |
Authors: Grabiele,M. and Aguilera,P.M. |
||
|
Title: Retrotransposons from the Coffea arabica genome. |
|||
|
Journal: Repbase Reports 21(11), 6568-6568 (2021) |
|||
Abstract: Analyzed genome of coffea: GCA_003713225.1 v1.0. Consensus of 47 full length seqs; mean 94.2% identity to consensus. Additional features: 5 nt TSDs; elements with 1 or 2 LTRs occur, but in the latter the internal region is only conserved along 1000 nt contiguous to LTRs; two major subpopulations of LTR-3_Car occur (a and b), which consensus share 82.2% similarity.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||