Repbase Reports |
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| 2014, Volume 14, Issue 8 |
| August 31, 2014 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2324 |
piggyBacA-1_DPur |
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Autonomous piggyBac transposon - consensus. |
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Submitted: 06-Feb-2012 |
Accepted: 31-Aug-2014 |
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Key Words: piggyBac; DNA transposon; Transposable Element; piggyBacA group; WTTAW TSDs; piggyBacA-1_DPur |
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Source: Dictyostelium purpureum |
Organism: Dictyostelium purpureum |
Taxonomy: Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: piggyBacA - a novel group of piggyBac transposons. |
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Journal: Repbase Reports 14(8), 2324-2324 (2014) |
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Abstract: This transposon belongs to a novel piggyBacA group of piggyBac transposons that also includes the piggyBacA-1_NGr, piggyBacA-1_DD, and piggyBacA-1_PPal transposons. The piggyBacA TPase is so distant from TPases encoded by other piggyBac transposons that their significant similarity to each other was detected only after 3 PSI-BLAST iterations, with specific parameter values different from the default: e.g. gap cost penalties were equal to (10, 1), instead of (11, 1). The genome contains a few copies of the transposon. Both termini are intact in 3 copies only. These copies are flanked by WTTAW 5-bp TSDs (TTTAT, TTTAA, ATTAA; including one copy inserted into DNA-3-1_DPur).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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