Repbase Reports |
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| 2014, Volume 14, Issue 8 |
| August 31, 2014 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2333 |
hATa-1_EHux |
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autonomous DNA transposon - a consensus sequence. |
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Submitted: 29-Oct-2013 |
Accepted: 31-Aug-2014 |
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Key Words: hAT; DNA transposon; Transposable Element; autonomous; hATa-1_EHux |
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Source: Emiliania huxleyi |
Organism: Emiliania huxleyi |
Taxonomy: Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; Emiliania |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Unusual hATa DNA transposons in Emiliania huxleyi. |
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Journal: Repbase Reports 14(8), 2333-2333 (2014) |
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Abstract: The hATa-1_EHux autonomous transposon codes for a 1189-aa protein that contains the hAT catalytic core. Based on BLASTP, this protein matches only three proteins: XP_002786939, XP_002775683 and XP_002776903 from the Perkinsus marinus ATCC 50983 (also protozoan). By PSI-BLAST, these four proteins converge with other hAT transposases. in hATa-1_EHux, the catalytic core is defined as D410-D481-R590-F591-E1085, with unusually long distance between the second D and E: 603-aa. This transposon and its non-autonomous relatives contain unusual 5'CCA and TGG-3' termini. Target site duplications are 8-bp long.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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