Repbase Reports
2013, Volume 13, Issue 9
September 30, 2013
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 2217

R2_CPB

Non-LTR retrotransposon: consensus.

Submitted:
11-Sep-2012 		Accepted:
30-Sep-2013
Key Words:
R2; Non-LTR Retrotransposon; Transposable Element; R2_CPB; R2-A
Source:
Chrysemys picta bellii 		Organism:
Chrysemys picta bellii 		Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines; Cryptodira; Testudinoidea; Emydidae; Chrysemys; Chrysemys picta
[2] Authors:
Kojima,K.K. and Jurka,J.
Title:
Non-LTR retrotransposons from the western painted turtle.
Journal:
Repbase Reports 13(9), 2217-2217 (2013)
Abstract:
Each copy is 80-90% identical to consensus. One copy (AHGY01453319) encodes a full-length protein and may be active. Its protein sequence is : MMEALASAQLGPGRRANSTHLDTDVVPWGRCTFRTFEPLARYRVKVSTVATQTDSHQLTDNEAYPTL KSSKTTVTEGEMYPIPGTSQTHTAAGAISCETVAQTEAEEILPALPLEILNSAFGETVGPDTSPEPCVPT TPVSEKERDAGGSETLADGTDGTICVPSSAPTVVVTEGECENRVQGKVLVTLPHDNPACPFCGDHVGKPK ALSVHMKHHHGGKDVEFQCSLCTRADPNVHSILCHIPKCKGLTPQEPAGDWACEVCARRFGTKSGLSQHK RRAHPVVRNAERIQASQPKQNSQRGKHKSCWSAEEELLLTDFDTMYSGEKYINKLIAEAIKTKTAKQVSD KRRLLNLYRKKSSGTADPGPGAQKHNLEVRSETPISTTGLKNSYMRTITNRLRASNRGPLRQDLEKFEAE VLSAWVAGDPNIRSLVETTSIDVLSSFLAPEHEHKHKQKGNTKGRKSKSGKGQSWRQKRATKRGTYIRFQ HLFENDRCKLASIILDGTERLQCEIPLEKVFQTYKDKWESRTPFQGLGQFKSHALADNSAFDILISAKEV LKNISEMNKNSAPGPDKVSLKDLVRVDPEGDTLAGLFNTWLVTGIIPDGIKECRSLLIPKTMDPEALQDL GNWRPLTIGSIVLRLFSRILTNRLAKACPINARQRGFIAAPGCSENLKVLHTITKQAKKEKKPLGVVFID IAKAFDSVSHDHIMWVLQERGLDQHIINIIGDSYRNVHTRMEVGKELTSPIAIDVGVKQGDPMSPLLFNL ALDPLISTLETAGKGFSFGAQKVTALAFADDLVMLSDSWEGMHTNIQILESFCHLSGLKVQAKKCHGFLL SPTHDSFTVNNCEAWKIGADGLNMIAPGESEKYLGLKVDPWIGFSKPALSDKLSTWLERINRAPLKPSQK LEMLNTFTIPRVIYLADHTDCKKTLLSSLDDNIRRAVKEWLHLPADTCNSFLYTRSRDGGLGVTRLASLI PSIQARRLHRIAHSEDMTIRFIALANDIESEYQSLWLAAGGTQDTMPAITDPVTIDHRLPQHALELLNEW ERPAPRVIYPIPCNWRDAEFSQWKDLPCQGSGVSHFGNDPTSNSWIKHLTGFSQRQFLTALKLRANVYPT REYLGRGKNEYMVKCRHCDAPYESLSHILGQCPAVQGARIRRHNKICEILTREARKLEWTVYQEPHLRTS TNELRKPDLVFVKDGTALVVDVTVRFEYKEQTFSDAAAEKVRHYQSLTSEISRLTGASKVRYFGFPLGAR GKWPKINDRVLSALGLSESAQGRAARLLSRRALLYSIDVLNTFSGIGKGLPNSADTKSVGTQREQLGIS.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Shaffer,H.B., Minx,P., Warren,D.E., Shedlock,A.M., Thomson,R.C., Valenzuela,N., Abramyan,J., Amemiya,C.T. et al.
    The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.
    Genome Biol 14(3), R28-R28 (2013)

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