Repbase Reports
2012, Volume 12, Issue 8
August 31, 2012
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1638

LT1_EPa

Short LTR retrotransposon from the Eutrema parvulum genome: consensus.

Submitted:
02-Sep-2011 		Accepted:
20-AUG-2012
Key Words:
LTR Retrotransposon; Transposable Element; LT1_EPa
Source:
Eutrema parvulum 		Organism:
Eutrema parvulum 		Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
[2] Authors:
Jurka,J.
Title:
LTR retrotransposons from the Eutrema parvulum genome.
Journal:
Repbase Reports 12(8), 1638-1638 (2012)
Abstract:
>89% identical to consensus. 5bp TSD. The element is complete, with short internal portion flanked by LTRs. The internal portion: tggtatcagagcccgatccacacactcttgtaatccggcccaaaaagtggtccgtgctcctggacccgaaattgatggtctggcgagattaatggctagaagagccattatctcgagggggag.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Dassanayake,M., Oh,D.H., Haas,J.S., Hernandez,A., Hong,H., Ali,S., Yun,D.J., Bressan,R.A., Zhu,J.K., Bohnert,H.J. et al.
    The genome of the extremophile crucifer Thellungiella parvula.
    Nat Genet 43(9), 913-918 (2011)

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