Repbase Reports
2011, Volume 11, Issue 9
September 30, 2011
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 2567

Sagan-1_LB

DNA transposon from Laccaria bicolor - a consensus.

Submitted:
10-May-2011 		Accepted:
30-Sep-2011
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Sagan-1_LB
Source:
Laccaria bicolor 		Organism:
Laccaria bicolor 		Taxonomy:
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Tricholomataceae; Laccaria
[2] Authors:
Kojima,K.K. and Jurka,J.
Title:
Sagan, a new group of DNA transposons belonging to the Mariner/Tc1/IS630 superfamily.
Journal:
Repbase Reports 11(9), 2567-2567 (2011)
Abstract:
This consensus is generated from 4 sequences with >99% identity. Sagan is a new group of DNA transposons belonging to the Mariner/Tc1/IS630 superfamily. But there is an insertion between D and E in the encoded DDE-transposase. Sagan-1_LB shares several features with other Mariner/Tc1/IS630, such as TA TSDs and short (27-bp) TIRs. The exon-intron structure is predicted with Softberry FGENESH.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Martin,F., Aerts,A., Ahr??n,D., Brun,A., Danchin,E.G., Duchaussoy,F., Gibon,J., Kohler,A., Lindquist,E. et al.
    The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis.
    Nature 452(7183), 88-92 (2008)

© 2001-2024 - Genetic Information Research Institute