Repbase Reports |
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| 2010, Volume 10, Issue 9 |
| September 30, 2010 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1223 |
Harbinger2-2_NV |
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A family of autonomous Harbinger transposons - a consensus. |
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Submitted: 13-Aug-2010 |
Accepted: 30-Sep-2010 |
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Key Words: Harbinger; DNA transposon; Transposable Element; Interspersed repeat; Harbinger2; Harbinger2-2_NV |
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Source: Nematostella vectensis |
Organism: Nematostella vectensis |
Taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Harbinger2, a novel clade of Harbinger transposons in protozoan, fungi, choanoflagellate, and metazoans. |
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Journal: Repbase Reports 10(9), 1223-1223 (2010) |
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Abstract: Harbinger2-2_NV belongs to a novel clade, Harbinger2, of Harbinger DNA transposons. This clade includes transposons present in protozoan (brown alga), fungi, choanoflagellate, and metazoans. Harbinger2-2_NV is a consensus sequence of a family of autonomous Harbinger transposons that were active in the Nematostella vectensis genome in a last few million years. The consensus sequences was derived from several copies of Harbinger2-2_NV that are ~97% identical to the consensus. The Harbinger2-2_NV transposon is characterized by 34-bp imperfect (5 mismatches) terminal inverted repeats, 3-bp target site duplications (TNA), and it encodes two proteins: (i) the 358-aa Harbinger2-2_NV1p transposase and (ii) the 129-aa Harbinger2-2_NV2p Myb-like DNA-binding protein.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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