Repbase Reports |
|---|
| 2010, Volume 10, Issue 9 |
| September 30, 2010 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1217 |
Harbinger2-1_NV |
|||
|---|---|---|---|
A family of autonomous Harbinger transposons - a consensus. |
|||
|
Submitted: 13-Aug-2010 |
Accepted: 30-Sep-2010 |
||
|
Key Words: Harbinger; DNA transposon; Transposable Element; Interspersed repeat; Harbinger2; Harbinger2-1_NV |
|||
|
Source: Nematostella vectensis |
Organism: Nematostella vectensis |
Taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: Harbinger2, a novel clade of Harbinger transposons in protozoan, fungi, choanoflagellate, and metazoans. |
|||
|
Journal: Repbase Reports 10(9), 1217-1217 (2010) |
|||
Abstract: Harbinger2-1_NV belongs to a novel clade, Harbinger2, of Harbinger DNA transposons. This clade includes transposons present in protozoan (brown alga), fungi, choanoflagellate, and metazoans. Harbinger2-1_NV is a consensus sequence of a family of autonomous Harbinger transposons that were active in the Nematostella vectensis genome in a last few million years. This transposon is probably still active. Some copies are >99% identical to each other. The Harbinger2-1_NV transposon is characterized by 28-bp imperfect (3 mismatches) terminal inverted repeats, 3-bp target site duplications (TNA), and it encodes two proteins: (i) the 358-aa Harbinger2-1_NV1p transposase and (ii) the 244-aa Harbinger2-1_NV2p Myb-like DNA-binding protein.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||