Repbase Reports |
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| 2010, Volume 10, Issue 8 |
| August 31, 2010 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1185 |
IMPB_02 |
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Consensus of repeated region of rat chromosome 4 similar to mouse chromosome 6 repeated region, enclosed in the intergenic region between genes Hrh1 and Atg7. |
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Submitted: 11-Aug-2010 |
Accepted: 31-Aug-2010 |
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Key Words: Simple Repeat; pattern of tandem duplications; intergenic region; histamine receptor H1; autophagy related 7 gene; conserved synteny region; mouse periodicity pattern IMPB_01; high similarity with part of IMPB_01; IMPB_02 |
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Source: Rattus norvegicus |
Organism: Rattus norvegicus |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus |
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Authors: Tetuev,R.K., Dedus,F.F. and Nazipova,N.N. |
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Title: Consensus of repeated region of rat chromosome 4 similar to mouse chromosome 6 repeated region, enclosed in the intergenic region between genes Hrh1 and Atg7. |
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Journal: Repbase Reports 10(8), 1185-1185 (2010) |
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Abstract: The region of rat chromosome 4 (Rattus norvegicus strain BN / SsNHsdMCW, reference assembly RGSC_v3.4) located at 150441813-150766559 contains approximately 155 tandem copies of a pattern with average length 2171 bps. The RGSC_v3.4 assembly of the region includes a number of N-gaps and there are only 25 continuous segments suitable for building the consensus: 150441813..150457014 (x7), 150571950..150576291 (x2), 150580893..150587402 (x3), 150588044..150594550 (x3), 150627376..150631711 (x2), 150640535..150642704 (x1), 150735114..150741625 (x3), 150752372..150756712 (x2), 150762213..150766559 (x2). Nevertheless the other incomplete segments show a high partial homology with the consensus and correlate with period of general periodicity. This rat periodicity pattern is highly similar (> 70%) to the periodicity pattern on the 6-th mouse chromosome (IMPB_01) and lies in the same conserved synteny region. Both are located in the intergenic region between genes Hrh1 (histamine receptor H1) and Atg7 (autophagy related 7 gene). It is assumed that the periodicity is a characteristics of rodent genomes.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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