Repbase Reports |
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| 2010, Volume 10, Issue 4 |
| April 30, 2010 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 548 |
Copia-2-I_FCy |
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Internal portion of a Copia-2_FCy LTR retrotransposon - consensus. |
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Submitted: 22-Jan-2010 |
Accepted: 22-JAN-2010 |
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Key Words: Copia; LTR Retrotransposon; Transposable Element; Copia-2_FCy; Copia-2-LTR_FCy; Copia-2-I_FCy |
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Source: Fragilariopsis cylindrus |
Organism: Fragilariopsis cylindrus |
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Fragilariopsis |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Copia-2_FCy family of LTR retrotransposons from diatom. |
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Journal: Repbase Reports 10(4), 548-548 (2010) |
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Abstract: The genome contains several proviral copies of Copia-2_FCy that are >98% identical to the consensus sequence. Copia-2_FCy is characterized by 6-bp TSDs. A 5'-terminus of its internal portion is not complementary to known tRNAs, and it does not form a self-priming palindrome. This family belongs to an ancient group of copia LTR retrotransposons, which includes also Copia6_TP, Copia7_TP and Copia8_TP. The consensus sequence was derived from sequence data produced by the US Department of Energy Joint Genome Institute http://www.jgi.doe.gov/ in collaboration with the user community.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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