Repbase Reports
2009, Volume 9, Issue 7
July 31, 2009
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1718

RTEX-1_BF

Amphioxus RTEX-1_BF autonomous non-LTR retrotransposon - consensus.

Submitted:
30-Jun-2009 		Accepted:
31-Jul-2009
Key Words:
RTEX; Non-LTR Retrotransposon; Transposable Element; CR1-9_BF; RTEX-1_BF
Source:
Branchiostoma floridae 		Organism:
Branchiostoma floridae 		Taxonomy:
Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma
[2] Authors:
Kapitonov,V. and Jurka,J.
Title:
Young families of RTEX non-LTR retrotransposons from the amphioxus genome.
Journal:
Repbase Reports 9(7), 1718-1718 (2009)
Abstract:
The 5' terminal portion is missing. The reconstructed RTEX-1_BF consensus sequence contains a C-terminal part of ORF1 and the complete ORF2. The RTEX-1_BF ORF1 protein contains the esterase domain. The 3' terminus is composed of the (CATTGT)n microsatellite.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Putnam,N.H., Butts,T., Ferrier,D.E., Furlong,R.F., Hellsten,U., Kawashima,T., Robinson-Rechavi,M., Shoguchi,E., Terry,A., Yu,J.K., Benito-Gutierez,E.L., Dubchak,I., Garcia-Fernadez,J., Gibson-Brown,J.J., Grigoriev,I.V., Horton,A.C., De Jong,P.J., Jurka,J., Kapitonov,V.V., Kohara,Y., Kuroki,Y., Lindquist,E., Lucas,S., Osoegawa,K., Pennacchio,L.A., Salamov,A.A., Satou,Y., Sauka-Spengler,T., Schmutz,J., Shin-I,T., Toyoda,A., Bronner-Fraser,M., Fujiyama,A., Holland,L.Z., Holland,P.W., Satoh,N. and Rokhsar,D.S.
    The amphioxus genome and the evolution of the chordate karyotype.
    Nature 453(7198), 1064-1071 (2008)

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