Repbase Reports |
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| 2009, Volume 9, Issue 3 |
| March 31, 2009 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 713 |
VIHAT3-N1_VV |
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VIHAT3-N1_VV, non-autonomous DNA transposon - a consensus sequence. |
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Submitted: 05-Feb-2009 |
Accepted: 31-Mar-2009 |
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Key Words: hAT; DNA transposon; Transposable Element; Nonautonomous; TIR; MITE; mHatvine-3.1; VIHAT3-N1_VV |
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Source: Vitis vinifera |
Organism: Vitis vinifera |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis |
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| [1] |
Authors: Benjak,A., Boue,S., Forneck,A. and Casacuberta,J.M. |
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Title: Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.). submitted. |
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Journal: Repbase Reports 9(3), 713-713 (2009) |
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Abstract: VIHAT3-N1_VV (mHatvine-3.1 in [1]) is a non-autonomous DNA transposon which is a deletion derivate of the autonomous VIHAT3. Individual copies are >90% identical to the consensus sequence. TIRs are 16 bp-long (with 2 conserved mismatches) and flanked by 8 bp-long TSDs. There are approximately 30 highly conserved copies present in the genome which could place this family in the group of MITEs.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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