Repbase Reports |
|---|
| 2009, Volume 9, Issue 3 |
| March 31, 2009 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 709 |
Harbinger-3N3B_VV |
|||
|---|---|---|---|
Harbinger-3N3B_VV, non-autonomous DNA transposon - a consensus sequence. |
|||
|
Submitted: 05-Feb-2009 |
Accepted: 31-Mar-2009 |
||
|
Key Words: Harbinger; DNA transposon; Transposable Element; Nonautonomous; PIF; TIR; MITE; mPifvine-3.4; Harbinger-3N3B_VV |
|||
|
Source: Vitis vinifera |
Organism: Vitis vinifera |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis |
|
| [1] |
Authors: Benjak,A., Boue,S., Forneck,A. and Casacuberta,J.M. |
||
|
Title: Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.). submitted. |
|||
|
Journal: Repbase Reports 9(3), 709-709 (2009) |
|||
Abstract: Harbinger-3N3B_VV (mPifvine-3.4 in [1]) is a non-autonomous DNA transposon of the MITE type. Unlike the Harbinger-3N1_VV, this element is not a deletion derivate of the autonomous Harbinger-3_VV but it has the same TIRs as Harbinger-3_VV. The first 100 bases are shared with Harbinger-3N3_VV. Individual copies are >80% identical to the consensus sequence. There is a number of copies that are less conserved. TIRs are 18 bp-long (with 1 conserved mismatch) and flanked by 3 bp-long TSDs. There are approximately 20 conserved copies in the genome.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||