Repbase Reports |
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| 2009, Volume 9, Issue 3 |
| March 31, 2009 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 708 |
Harbinger-3N2_VV |
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Harbinger-3N2_VV, non-autonomous DNA transposon - a consensus sequence. |
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Submitted: 05-Feb-2009 |
Accepted: 31-Mar-2009 |
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Key Words: Harbinger; DNA transposon; Transposable Element; Nonautonomous; PIF; TIR; MITE; mPifvine-3.2; Harbinger-3N2_VV |
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Source: Vitis vinifera |
Organism: Vitis vinifera |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis |
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Authors: Benjak,A., Boue,S., Forneck,A. and Casacuberta,J.M. |
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Title: Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.). submitted. |
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Journal: Repbase Reports 9(3), 708-708 (2009) |
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Abstract: Harbinger-3N2_VV (mPifvine-3.2 in [1]) is a non-autonomous DNA transposon of the MITE type. Unlike the Harbinger-3N1_VV, this element is not a deletion derivate of the autonomous Harbinger-3_VV but it has the same TIRs as Harbinger-3_VV. It is almost a prefect palindrome. Individual copies are >80% identical to the consensus sequence. TIRs are 18 bp-long and flanked by 3 bp-long TSDs. There are approximately 1300 highly conserved copies present in the genome.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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